Query 009993
Match_columns 520
No_of_seqs 896 out of 4792
Neff 10.8
Searched_HMMs 46136
Date Thu Mar 28 19:46:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009993.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009993hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0281 Beta-TrCP (transducin 100.0 5.8E-56 1.3E-60 384.2 19.2 388 35-456 44-482 (499)
2 KOG0271 Notchless-like WD40 re 100.0 1.1E-49 2.3E-54 349.4 22.9 328 80-449 94-479 (480)
3 KOG0271 Notchless-like WD40 re 100.0 1.6E-48 3.5E-53 342.1 26.3 312 134-492 107-470 (480)
4 KOG0274 Cdc4 and related F-box 100.0 6.7E-45 1.5E-49 356.4 33.1 398 21-459 63-490 (537)
5 KOG0272 U4/U6 small nuclear ri 100.0 2.3E-43 4.9E-48 313.7 22.8 272 139-449 172-458 (459)
6 KOG0286 G-protein beta subunit 100.0 1.6E-41 3.4E-46 288.4 31.2 282 135-449 48-343 (343)
7 KOG0315 G-protein beta subunit 100.0 1.2E-39 2.5E-44 270.8 26.2 277 155-461 11-298 (311)
8 KOG0281 Beta-TrCP (transducin 100.0 9.3E-41 2E-45 289.8 15.5 273 106-395 199-480 (499)
9 KOG0279 G protein beta subunit 100.0 7.4E-38 1.6E-42 264.5 31.6 285 135-451 8-313 (315)
10 KOG0285 Pleiotropic regulator 100.0 2.1E-38 4.5E-43 276.3 26.3 291 133-453 142-441 (460)
11 KOG0295 WD40 repeat-containing 100.0 3.9E-38 8.4E-43 275.4 24.5 280 133-450 99-405 (406)
12 KOG0272 U4/U6 small nuclear ri 100.0 1.8E-39 3.8E-44 289.0 15.8 245 126-390 197-458 (459)
13 KOG0273 Beta-transducin family 100.0 3.9E-36 8.4E-41 271.2 26.2 310 133-494 170-514 (524)
14 KOG0265 U5 snRNP-specific prot 100.0 3.6E-35 7.9E-40 250.7 26.5 282 133-449 38-336 (338)
15 KOG0291 WD40-repeat-containing 100.0 1.4E-34 2.9E-39 275.1 32.8 371 106-494 98-541 (893)
16 KOG0284 Polyadenylation factor 100.0 1.3E-36 2.9E-41 269.5 17.6 272 141-451 95-380 (464)
17 KOG0645 WD40 repeat protein [G 100.0 3.6E-34 7.8E-39 241.2 31.0 283 135-451 7-311 (312)
18 KOG0316 Conserved WD40 repeat- 100.0 5.9E-35 1.3E-39 240.9 25.4 275 135-451 10-299 (307)
19 KOG0319 WD40-repeat-containing 100.0 8.8E-35 1.9E-39 276.1 27.8 316 133-495 95-611 (775)
20 KOG0286 G-protein beta subunit 100.0 7.4E-35 1.6E-39 247.8 23.2 277 93-390 46-343 (343)
21 KOG0273 Beta-transducin family 100.0 2.6E-34 5.6E-39 259.4 27.9 269 143-451 236-523 (524)
22 KOG0293 WD40 repeat-containing 100.0 1.1E-34 2.4E-39 257.5 24.8 280 133-452 215-514 (519)
23 KOG0313 Microtubule binding pr 100.0 3.2E-34 7E-39 252.2 25.8 277 140-451 103-418 (423)
24 KOG0319 WD40-repeat-containing 100.0 5.5E-34 1.2E-38 270.7 28.5 286 133-454 314-622 (775)
25 KOG0318 WD40 repeat stress pro 100.0 2.4E-33 5.1E-38 256.5 31.6 296 133-451 181-602 (603)
26 KOG0315 G-protein beta subunit 100.0 6E-34 1.3E-38 236.9 25.0 249 125-394 19-290 (311)
27 KOG0276 Vesicle coat complex C 100.0 9.3E-34 2E-38 264.0 27.0 241 134-394 5-259 (794)
28 KOG0263 Transcription initiati 100.0 6.1E-34 1.3E-38 273.2 25.6 275 140-434 376-696 (707)
29 cd00200 WD40 WD40 domain, foun 100.0 2.2E-32 4.8E-37 256.4 36.0 276 135-449 2-289 (289)
30 KOG0291 WD40-repeat-containing 100.0 1.2E-32 2.5E-37 262.1 33.9 333 138-514 261-615 (893)
31 KOG0279 G protein beta subunit 100.0 6.2E-33 1.4E-37 234.7 28.5 281 176-491 7-301 (315)
32 KOG0282 mRNA splicing factor [ 100.0 6.8E-35 1.5E-39 264.2 17.5 284 130-449 202-503 (503)
33 KOG0296 Angio-associated migra 100.0 1.6E-33 3.5E-38 246.7 25.5 313 133-494 55-389 (399)
34 KOG0296 Angio-associated migra 100.0 3.5E-33 7.5E-38 244.6 26.1 305 106-451 66-398 (399)
35 KOG0295 WD40 repeat-containing 100.0 5.6E-34 1.2E-38 249.4 20.4 249 123-391 127-405 (406)
36 KOG0266 WD40 repeat-containing 100.0 1.2E-32 2.7E-37 271.6 32.5 284 129-451 146-454 (456)
37 PLN00181 protein SPA1-RELATED; 100.0 1.1E-31 2.4E-36 284.7 38.7 291 137-450 478-792 (793)
38 KOG0318 WD40 repeat stress pro 100.0 3.6E-31 7.8E-36 242.3 33.9 351 129-507 132-521 (603)
39 KOG0285 Pleiotropic regulator 100.0 1.7E-32 3.8E-37 239.4 22.2 276 176-493 143-429 (460)
40 KOG0263 Transcription initiati 100.0 1.8E-32 3.8E-37 263.2 23.5 246 185-456 381-654 (707)
41 KOG0265 U5 snRNP-specific prot 100.0 5.7E-32 1.2E-36 231.2 22.1 271 96-390 41-336 (338)
42 KOG0274 Cdc4 and related F-box 100.0 6.3E-32 1.4E-36 265.2 25.7 250 126-397 228-487 (537)
43 KOG0292 Vesicle coat complex C 100.0 8.1E-32 1.7E-36 260.3 25.1 243 136-395 3-283 (1202)
44 KOG0284 Polyadenylation factor 100.0 3.4E-33 7.4E-38 247.9 13.9 265 108-393 100-381 (464)
45 KOG0282 mRNA splicing factor [ 100.0 6.2E-33 1.3E-37 251.5 15.3 270 98-390 210-503 (503)
46 KOG0306 WD40-repeat-containing 100.0 7.2E-31 1.6E-35 249.8 28.4 358 105-493 108-654 (888)
47 KOG0306 WD40-repeat-containing 100.0 4.6E-31 1E-35 251.1 26.4 278 136-453 367-666 (888)
48 KOG0276 Vesicle coat complex C 100.0 1.7E-31 3.6E-36 249.1 21.2 262 107-388 16-295 (794)
49 KOG0313 Microtubule binding pr 100.0 5.7E-31 1.2E-35 231.9 22.0 264 125-393 124-419 (423)
50 KOG0266 WD40 repeat-containing 100.0 1.4E-30 2.9E-35 257.1 27.2 267 106-392 161-454 (456)
51 KOG0277 Peroxisomal targeting 100.0 1.4E-30 3E-35 217.5 22.4 269 146-450 12-308 (311)
52 KOG0268 Sof1-like rRNA process 100.0 2E-31 4.3E-36 233.3 15.2 280 133-455 57-349 (433)
53 KOG0283 WD40 repeat-containing 100.0 3.1E-30 6.6E-35 250.0 23.8 290 135-452 259-577 (712)
54 KOG0293 WD40 repeat-containing 100.0 4.6E-31 9.9E-36 234.6 16.3 252 121-393 241-514 (519)
55 KOG0645 WD40 repeat protein [G 100.0 2.3E-29 5E-34 212.2 25.6 254 122-392 33-311 (312)
56 KOG0278 Serine/threonine kinas 100.0 2.9E-31 6.2E-36 221.0 13.8 240 135-394 52-299 (334)
57 KOG0643 Translation initiation 100.0 9.5E-29 2.1E-33 208.1 26.3 289 137-453 5-319 (327)
58 KOG0288 WD40 repeat protein Ti 100.0 3.7E-30 8.1E-35 229.0 15.2 277 133-449 166-459 (459)
59 KOG0300 WD40 repeat-containing 100.0 7E-29 1.5E-33 213.7 22.2 298 133-453 139-478 (481)
60 PLN00181 protein SPA1-RELATED; 100.0 8.2E-28 1.8E-32 255.2 35.3 304 163-493 457-783 (793)
61 KOG0292 Vesicle coat complex C 100.0 5.9E-28 1.3E-32 233.8 29.2 280 124-455 29-352 (1202)
62 KOG0278 Serine/threonine kinas 100.0 1.5E-29 3.3E-34 210.7 15.8 279 136-456 8-302 (334)
63 KOG0647 mRNA export protein (c 100.0 5.6E-28 1.2E-32 207.0 24.6 241 140-394 25-283 (347)
64 KOG1446 Histone H3 (Lys4) meth 100.0 1.2E-26 2.6E-31 200.7 32.4 279 136-452 8-304 (311)
65 KOG0316 Conserved WD40 repeat- 100.0 1E-28 2.3E-33 204.1 18.7 264 108-392 21-299 (307)
66 KOG1407 WD40 repeat protein [F 100.0 1.4E-27 3.1E-32 200.4 25.3 277 136-452 14-312 (313)
67 KOG0772 Uncharacterized conser 100.0 4.3E-28 9.4E-33 221.6 23.3 292 135-451 160-487 (641)
68 KOG0640 mRNA cleavage stimulat 100.0 2.3E-28 5.1E-33 209.8 19.9 282 135-451 105-426 (430)
69 cd00200 WD40 WD40 domain, foun 100.0 2.8E-27 6E-32 221.7 28.4 263 107-390 12-289 (289)
70 KOG1036 Mitotic spindle checkp 100.0 4.8E-27 1E-31 202.1 26.9 265 141-441 12-294 (323)
71 KOG0641 WD40 repeat protein [G 100.0 3.9E-26 8.4E-31 187.7 31.1 283 140-451 30-349 (350)
72 KOG0275 Conserved WD40 repeat- 100.0 6.6E-29 1.4E-33 214.4 15.6 278 133-449 203-507 (508)
73 KOG0310 Conserved WD40 repeat- 100.0 7.9E-28 1.7E-32 218.9 22.4 240 133-393 59-310 (487)
74 KOG0277 Peroxisomal targeting 100.0 3.4E-28 7.4E-33 203.3 18.4 232 141-391 59-308 (311)
75 KOG0301 Phospholipase A2-activ 100.0 1E-27 2.2E-32 226.7 22.9 269 134-451 6-288 (745)
76 KOG0973 Histone transcription 100.0 8.1E-27 1.8E-31 232.0 28.9 291 141-455 12-359 (942)
77 KOG0288 WD40 repeat protein Ti 100.0 8.2E-28 1.8E-32 214.2 19.4 247 124-390 195-459 (459)
78 KOG0299 U3 snoRNP-associated p 100.0 2.5E-27 5.5E-32 214.0 21.0 286 135-492 135-444 (479)
79 KOG0275 Conserved WD40 repeat- 100.0 2.4E-28 5.1E-33 211.0 13.8 261 109-390 218-507 (508)
80 KOG0310 Conserved WD40 repeat- 100.0 8.4E-27 1.8E-31 212.3 24.5 285 126-451 9-309 (487)
81 KOG0308 Conserved WD40 repeat- 100.0 6.7E-28 1.5E-32 226.3 17.4 230 147-394 29-287 (735)
82 KOG0294 WD40 repeat-containing 100.0 2.7E-26 5.8E-31 197.9 24.7 256 157-454 4-284 (362)
83 KOG0289 mRNA splicing factor [ 100.0 4.6E-26 9.9E-31 204.3 26.7 271 143-450 220-505 (506)
84 PTZ00421 coronin; Provisional 100.0 1.7E-25 3.7E-30 219.8 31.3 237 137-392 70-331 (493)
85 KOG0294 WD40 repeat-containing 100.0 3.6E-26 7.8E-31 197.0 22.7 236 135-394 36-283 (362)
86 KOG0641 WD40 repeat protein [G 100.0 2.5E-25 5.4E-30 183.0 26.5 240 137-392 84-349 (350)
87 KOG0305 Anaphase promoting com 100.0 2.7E-26 5.9E-31 217.1 23.7 248 127-394 198-463 (484)
88 KOG0308 Conserved WD40 repeat- 100.0 6.7E-27 1.4E-31 219.6 19.2 340 111-460 31-402 (735)
89 KOG0305 Anaphase promoting com 99.9 1.3E-25 2.7E-30 212.6 26.9 264 148-453 183-463 (484)
90 PTZ00421 coronin; Provisional 99.9 2.1E-24 4.6E-29 212.1 33.9 242 141-394 19-292 (493)
91 KOG1539 WD repeat protein [Gen 99.9 1.9E-25 4.1E-30 215.6 25.4 352 123-511 179-648 (910)
92 KOG0643 Translation initiation 99.9 1.4E-24 2.9E-29 183.1 25.6 277 180-493 6-307 (327)
93 KOG1407 WD40 repeat protein [F 99.9 1.6E-25 3.6E-30 188.1 19.8 267 178-493 14-292 (313)
94 PTZ00420 coronin; Provisional 99.9 5.3E-24 1.2E-28 210.1 33.5 224 160-394 50-295 (568)
95 KOG1332 Vesicle coat complex C 99.9 1.5E-25 3.2E-30 186.5 17.8 248 137-451 6-286 (299)
96 KOG0264 Nucleosome remodeling 99.9 9.3E-25 2E-29 197.6 22.8 256 183-452 123-405 (422)
97 KOG0268 Sof1-like rRNA process 99.9 1.2E-25 2.5E-30 197.3 16.5 277 178-511 60-345 (433)
98 KOG0301 Phospholipase A2-activ 99.9 5.7E-25 1.2E-29 208.2 21.9 245 122-393 31-289 (745)
99 KOG0289 mRNA splicing factor [ 99.9 1.9E-24 4E-29 194.0 23.5 245 132-391 251-505 (506)
100 PTZ00420 coronin; Provisional 99.9 1.2E-23 2.7E-28 207.5 31.0 215 200-453 50-295 (568)
101 KOG2096 WD40 repeat protein [G 99.9 1.8E-23 3.9E-28 180.7 27.5 298 135-453 79-404 (420)
102 KOG0299 U3 snoRNP-associated p 99.9 1.9E-24 4.2E-29 195.5 22.3 238 139-392 199-456 (479)
103 KOG0269 WD40 repeat-containing 99.9 3.7E-25 7.9E-30 212.0 18.0 285 137-458 37-347 (839)
104 KOG0264 Nucleosome remodeling 99.9 2.8E-24 6E-29 194.5 20.9 248 139-393 121-405 (422)
105 KOG0646 WD40 repeat protein [G 99.9 3.7E-24 8.1E-29 194.0 20.7 241 142-393 81-351 (476)
106 KOG0639 Transducin-like enhanc 99.9 5E-24 1.1E-28 194.5 19.4 272 140-450 417-703 (705)
107 KOG2445 Nuclear pore complex c 99.9 6.3E-23 1.4E-27 176.6 24.8 247 139-392 10-318 (361)
108 KOG1408 WD40 repeat protein [F 99.9 3.9E-24 8.5E-29 202.9 19.1 236 140-393 457-714 (1080)
109 KOG0640 mRNA cleavage stimulat 99.9 2.6E-24 5.6E-29 185.1 16.2 245 133-392 163-426 (430)
110 KOG2055 WD40 repeat protein [G 99.9 3.6E-23 7.7E-28 187.3 24.3 285 142-451 213-512 (514)
111 KOG0300 WD40 repeat-containing 99.9 1.3E-23 2.9E-28 181.2 20.5 282 157-486 127-457 (481)
112 KOG0650 WD40 repeat nucleolar 99.9 3.4E-23 7.5E-28 193.0 22.9 298 133-448 391-732 (733)
113 KOG1036 Mitotic spindle checkp 99.9 9.7E-23 2.1E-27 175.7 23.8 267 189-495 20-296 (323)
114 KOG0647 mRNA export protein (c 99.9 1.5E-22 3.2E-27 173.9 24.2 270 184-492 29-312 (347)
115 KOG1408 WD40 repeat protein [F 99.9 5.9E-23 1.3E-27 195.0 23.6 318 137-496 364-755 (1080)
116 KOG0321 WD40 repeat-containing 99.9 4.3E-23 9.3E-28 193.8 21.8 271 154-457 64-397 (720)
117 KOG1274 WD40 repeat protein [G 99.9 3.1E-22 6.7E-27 195.8 28.2 236 139-393 10-263 (933)
118 KOG1446 Histone H3 (Lys4) meth 99.9 5.6E-22 1.2E-26 171.9 26.3 272 178-492 8-294 (311)
119 KOG4283 Transcription-coupled 99.9 9.7E-23 2.1E-27 174.3 21.2 215 182-397 41-281 (397)
120 KOG2106 Uncharacterized conser 99.9 6.8E-22 1.5E-26 180.9 27.2 361 111-492 207-615 (626)
121 KOG0973 Histone transcription 99.9 2.6E-22 5.6E-27 200.2 25.2 241 134-394 61-357 (942)
122 KOG1539 WD repeat protein [Gen 99.9 1.4E-21 3.1E-26 189.0 29.2 244 133-393 105-366 (910)
123 KOG1063 RNA polymerase II elon 99.9 1.2E-21 2.5E-26 185.9 26.8 321 99-453 188-650 (764)
124 KOG0270 WD40 repeat-containing 99.9 2E-22 4.4E-27 181.7 20.6 243 193-459 191-457 (463)
125 KOG0646 WD40 repeat protein [G 99.9 3.2E-22 6.9E-27 181.6 21.1 228 155-397 51-312 (476)
126 KOG2048 WD40 repeat protein [G 99.9 3E-21 6.5E-26 182.9 26.7 326 135-493 61-402 (691)
127 KOG4283 Transcription-coupled 99.9 3E-21 6.4E-26 165.3 23.8 279 138-450 39-364 (397)
128 KOG2445 Nuclear pore complex c 99.9 4.9E-21 1.1E-25 165.0 25.3 257 182-452 11-319 (361)
129 KOG0321 WD40 repeat-containing 99.9 6.1E-22 1.3E-26 186.2 20.4 256 135-396 93-395 (720)
130 KOG2096 WD40 repeat protein [G 99.9 6.9E-21 1.5E-25 164.8 24.0 289 178-493 80-393 (420)
131 KOG0283 WD40 repeat-containing 99.9 1.1E-21 2.4E-26 190.9 20.3 200 133-348 360-578 (712)
132 KOG1332 Vesicle coat complex C 99.9 4.9E-22 1.1E-26 165.7 15.3 252 182-517 9-290 (299)
133 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 6.6E-20 1.4E-24 173.5 32.3 264 154-457 1-285 (300)
134 KOG0267 Microtubule severing p 99.9 3.3E-23 7.3E-28 197.2 8.7 216 154-395 4-229 (825)
135 KOG0269 WD40 repeat-containing 99.9 2.7E-22 5.9E-27 192.5 14.5 230 147-394 92-342 (839)
136 KOG0639 Transducin-like enhanc 99.9 4.4E-22 9.5E-27 181.9 15.1 251 119-391 433-703 (705)
137 KOG0772 Uncharacterized conser 99.9 2E-21 4.3E-26 178.3 19.1 260 119-391 182-486 (641)
138 KOG2048 WD40 repeat protein [G 99.9 9.9E-20 2.1E-24 172.7 30.7 278 140-452 23-320 (691)
139 KOG1063 RNA polymerase II elon 99.9 5.1E-20 1.1E-24 174.9 27.3 304 134-453 46-439 (764)
140 KOG2106 Uncharacterized conser 99.9 1.1E-19 2.5E-24 166.5 28.3 316 129-495 183-513 (626)
141 KOG0302 Ribosome Assembly prot 99.9 9.2E-21 2E-25 167.6 19.4 250 193-449 164-436 (440)
142 KOG0270 WD40 repeat-containing 99.9 1.2E-20 2.6E-25 170.4 20.2 223 154-394 192-451 (463)
143 KOG0267 Microtubule severing p 99.9 2.2E-22 4.8E-27 191.6 9.5 227 136-382 22-258 (825)
144 KOG1274 WD40 repeat protein [G 99.9 8.2E-20 1.8E-24 179.0 26.7 263 186-490 17-287 (933)
145 KOG1034 Transcriptional repres 99.9 6.6E-20 1.4E-24 159.5 22.2 294 129-451 25-383 (385)
146 KOG4378 Nuclear protein COP1 [ 99.9 1.7E-20 3.7E-25 171.4 18.9 281 120-438 6-309 (673)
147 KOG1007 WD repeat protein TSSC 99.9 8.5E-20 1.9E-24 156.0 21.4 280 163-452 39-362 (370)
148 KOG1273 WD40 repeat protein [G 99.9 7.6E-20 1.6E-24 158.2 21.1 290 133-459 16-330 (405)
149 KOG4328 WD40 protein [Function 99.9 7E-20 1.5E-24 166.0 21.6 288 135-451 179-495 (498)
150 KOG2919 Guanine nucleotide-bin 99.9 1.3E-19 2.8E-24 157.3 21.8 268 146-452 53-368 (406)
151 KOG0642 Cell-cycle nuclear pro 99.9 7.1E-21 1.5E-25 176.9 13.6 255 129-394 282-563 (577)
152 KOG0302 Ribosome Assembly prot 99.8 2E-19 4.3E-24 159.2 20.1 241 137-389 146-435 (440)
153 KOG4378 Nuclear protein COP1 [ 99.8 1.1E-19 2.5E-24 166.1 18.4 282 161-485 9-305 (673)
154 KOG1445 Tumor-specific antigen 99.8 2.2E-19 4.8E-24 168.8 20.6 149 319-494 630-785 (1012)
155 KOG1188 WD40 repeat protein [G 99.8 9.4E-20 2E-24 159.4 16.5 245 195-455 41-350 (376)
156 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 5.5E-18 1.2E-22 160.4 29.2 240 134-395 23-282 (300)
157 KOG0307 Vesicle coat complex C 99.8 1.9E-20 4.2E-25 187.8 12.3 276 147-454 11-330 (1049)
158 KOG1517 Guanine nucleotide bin 99.8 1E-18 2.3E-23 173.3 23.8 300 129-453 1053-1383(1387)
159 KOG2055 WD40 repeat protein [G 99.8 6.3E-19 1.4E-23 160.0 18.4 267 107-392 216-512 (514)
160 KOG0649 WD40 repeat protein [G 99.8 5.3E-18 1.1E-22 141.7 22.1 241 143-394 11-276 (325)
161 KOG2919 Guanine nucleotide-bin 99.8 3.5E-18 7.7E-23 148.5 21.0 268 189-492 56-359 (406)
162 KOG2110 Uncharacterized conser 99.8 3.6E-16 7.9E-21 138.7 32.3 232 141-395 4-251 (391)
163 KOG0644 Uncharacterized conser 99.8 1.7E-19 3.6E-24 174.7 11.1 277 133-456 181-473 (1113)
164 KOG0322 G-protein beta subunit 99.8 1.3E-18 2.9E-23 146.9 15.2 277 136-450 8-322 (323)
165 KOG1334 WD40 repeat protein [G 99.8 7.8E-19 1.7E-23 160.5 14.6 291 133-452 133-467 (559)
166 KOG0649 WD40 repeat protein [G 99.8 2.6E-17 5.7E-22 137.6 21.8 238 189-452 17-275 (325)
167 KOG4328 WD40 protein [Function 99.8 6.4E-18 1.4E-22 153.4 19.2 284 176-493 178-484 (498)
168 KOG1273 WD40 repeat protein [G 99.8 1.6E-17 3.4E-22 144.0 20.5 272 185-491 26-311 (405)
169 KOG1034 Transcriptional repres 99.8 4.2E-18 9.2E-23 148.3 16.4 249 131-392 76-383 (385)
170 KOG1009 Chromatin assembly com 99.8 5E-17 1.1E-21 145.6 23.2 289 142-455 13-376 (434)
171 KOG0307 Vesicle coat complex C 99.8 2E-18 4.4E-23 173.5 14.2 234 144-395 66-330 (1049)
172 KOG1240 Protein kinase contain 99.8 8.4E-17 1.8E-21 162.5 24.2 263 129-397 1032-1339(1431)
173 COG2319 FOG: WD40 repeat [Gene 99.8 3.6E-15 7.8E-20 148.2 35.8 283 136-454 59-362 (466)
174 KOG4227 WD40 repeat protein [G 99.8 1.1E-16 2.5E-21 142.5 21.6 296 135-450 49-386 (609)
175 KOG1538 Uncharacterized conser 99.8 1E-16 2.3E-21 151.9 21.4 275 132-451 4-293 (1081)
176 KOG0303 Actin-binding protein 99.8 5.6E-17 1.2E-21 144.7 18.2 209 135-394 74-296 (472)
177 KOG1963 WD40 repeat protein [G 99.8 9.5E-16 2.1E-20 150.5 28.3 336 133-490 48-526 (792)
178 KOG1007 WD repeat protein TSSC 99.8 1.4E-16 3E-21 136.6 19.2 249 135-393 56-362 (370)
179 KOG1587 Cytoplasmic dynein int 99.7 9.5E-16 2.1E-20 150.2 26.9 261 163-453 221-518 (555)
180 COG2319 FOG: WD40 repeat [Gene 99.7 1E-14 2.2E-19 145.0 35.1 316 125-490 86-429 (466)
181 KOG0290 Conserved WD40 repeat- 99.7 3.2E-16 6.9E-21 134.5 18.7 231 139-383 93-357 (364)
182 KOG0650 WD40 repeat nucleolar 99.7 6.5E-16 1.4E-20 145.0 22.3 277 178-494 394-726 (733)
183 KOG0303 Actin-binding protein 99.7 3.3E-16 7.2E-21 139.8 16.6 198 232-454 76-297 (472)
184 KOG1587 Cytoplasmic dynein int 99.7 2E-15 4.4E-20 147.9 23.0 248 141-394 241-518 (555)
185 KOG1188 WD40 repeat protein [G 99.7 4E-16 8.6E-21 136.9 15.9 248 133-392 61-346 (376)
186 KOG1524 WD40 repeat-containing 99.7 7.6E-16 1.6E-20 142.7 18.5 257 140-447 12-282 (737)
187 KOG1517 Guanine nucleotide bin 99.7 2.8E-15 6.1E-20 149.4 23.7 274 186-492 1068-1370(1387)
188 KOG1240 Protein kinase contain 99.7 2.6E-15 5.7E-20 151.9 23.1 275 169-456 1034-1339(1431)
189 KOG0290 Conserved WD40 repeat- 99.7 9E-16 2E-20 131.8 16.7 231 234-492 93-355 (364)
190 KOG2111 Uncharacterized conser 99.7 1.7E-13 3.7E-18 119.5 29.4 229 144-395 7-259 (346)
191 KOG1409 Uncharacterized conser 99.7 5.9E-15 1.3E-19 129.8 20.3 247 133-394 15-272 (404)
192 KOG0642 Cell-cycle nuclear pro 99.7 4.8E-16 1.1E-20 145.0 12.8 224 122-364 312-573 (577)
193 KOG2110 Uncharacterized conser 99.7 4.4E-14 9.6E-19 125.6 24.5 228 190-454 13-251 (391)
194 KOG1538 Uncharacterized conser 99.7 2.4E-15 5.2E-20 142.8 16.9 257 108-392 16-293 (1081)
195 KOG1523 Actin-related protein 99.7 2.4E-14 5.1E-19 124.9 21.2 227 141-383 9-269 (361)
196 KOG1009 Chromatin assembly com 99.7 6.2E-15 1.3E-19 132.4 17.1 218 118-348 28-374 (434)
197 KOG1963 WD40 repeat protein [G 99.7 1.1E-13 2.5E-18 136.1 27.3 291 139-453 202-540 (792)
198 KOG0322 G-protein beta subunit 99.7 2.7E-15 5.8E-20 127.2 13.7 245 228-495 5-315 (323)
199 PRK11028 6-phosphogluconolacto 99.6 5.6E-13 1.2E-17 127.6 30.6 267 157-451 5-304 (330)
200 KOG2394 WD40 protein DMR-N9 [G 99.6 2.6E-14 5.7E-19 132.8 19.8 214 144-374 125-384 (636)
201 KOG1310 WD40 repeat protein [G 99.6 5.9E-15 1.3E-19 137.3 14.1 214 134-350 42-307 (758)
202 KOG0771 Prolactin regulatory e 99.6 1.1E-14 2.4E-19 131.6 15.0 191 146-348 148-356 (398)
203 KOG0644 Uncharacterized conser 99.6 3.7E-16 8E-21 151.8 5.5 260 176-490 182-455 (1113)
204 KOG4227 WD40 repeat protein [G 99.6 7E-14 1.5E-18 124.9 17.8 301 179-512 51-388 (609)
205 KOG1445 Tumor-specific antigen 99.6 2.9E-14 6.3E-19 134.8 14.5 235 190-453 587-846 (1012)
206 KOG1272 WD40-repeat-containing 99.6 7.6E-15 1.6E-19 133.9 9.0 223 144-391 131-361 (545)
207 PRK01742 tolB translocation pr 99.6 4E-13 8.7E-18 132.7 21.5 217 135-375 196-426 (429)
208 KOG0974 WD-repeat protein WDR6 99.6 2.1E-13 4.6E-18 136.5 19.2 267 142-452 7-289 (967)
209 KOG1272 WD40-repeat-containing 99.6 1.1E-14 2.4E-19 132.9 9.2 224 184-449 131-360 (545)
210 KOG3881 Uncharacterized conser 99.6 7.6E-13 1.6E-17 118.7 19.9 238 140-394 53-322 (412)
211 KOG1310 WD40 repeat protein [G 99.5 7.4E-14 1.6E-18 130.0 13.5 228 229-459 42-311 (758)
212 KOG0771 Prolactin regulatory e 99.5 1E-13 2.2E-18 125.5 13.8 188 186-393 148-355 (398)
213 PRK11028 6-phosphogluconolacto 99.5 1.6E-11 3.4E-16 117.6 28.2 239 142-393 34-305 (330)
214 KOG3881 Uncharacterized conser 99.5 4.2E-12 9.1E-17 114.0 20.8 206 233-461 101-330 (412)
215 KOG1334 WD40 repeat protein [G 99.5 8.8E-13 1.9E-17 121.4 16.5 298 177-510 135-465 (559)
216 KOG2321 WD40 repeat protein [G 99.5 2.6E-12 5.6E-17 120.6 19.7 258 188-491 57-331 (703)
217 KOG2321 WD40 repeat protein [G 99.5 1.4E-11 3E-16 115.8 22.7 276 135-453 45-345 (703)
218 KOG2111 Uncharacterized conser 99.5 6.5E-11 1.4E-15 103.7 23.7 234 188-454 11-259 (346)
219 TIGR03300 assembly_YfgL outer 99.5 7.3E-11 1.6E-15 115.2 27.4 264 153-457 64-344 (377)
220 KOG1524 WD40 repeat-containing 99.4 1.3E-12 2.8E-17 121.6 13.5 183 133-343 95-283 (737)
221 KOG1523 Actin-related protein 99.4 3.7E-11 8.1E-16 105.2 21.3 198 187-394 15-238 (361)
222 PF02239 Cytochrom_D1: Cytochr 99.4 5.2E-10 1.1E-14 107.0 28.9 294 155-496 6-338 (369)
223 KOG2139 WD40 repeat protein [G 99.4 3.1E-10 6.8E-15 101.1 24.2 245 143-393 99-384 (445)
224 PRK03629 tolB translocation pr 99.4 1.5E-10 3.3E-15 114.2 24.3 215 135-374 191-427 (429)
225 PRK01742 tolB translocation pr 99.4 5.8E-11 1.2E-15 117.4 21.0 202 163-392 183-401 (429)
226 TIGR03300 assembly_YfgL outer 99.4 9.4E-10 2E-14 107.4 27.8 258 153-448 104-376 (377)
227 PF02239 Cytochrom_D1: Cytochr 99.3 9E-10 2E-14 105.4 26.1 286 135-457 29-353 (369)
228 KOG1354 Serine/threonine prote 99.3 3.5E-10 7.5E-15 100.1 20.6 291 141-455 24-363 (433)
229 KOG0974 WD-repeat protein WDR6 99.3 3.6E-10 7.7E-15 113.9 22.4 192 143-348 88-290 (967)
230 PRK04922 tolB translocation pr 99.3 5.6E-10 1.2E-14 110.6 22.8 215 135-374 196-432 (433)
231 KOG4547 WD40 repeat-containing 99.3 6.1E-10 1.3E-14 105.7 20.9 205 152-393 3-221 (541)
232 PRK02889 tolB translocation pr 99.3 1.3E-09 2.7E-14 107.8 23.3 216 136-374 189-424 (427)
233 KOG2139 WD40 repeat protein [G 99.3 1.2E-09 2.6E-14 97.5 20.3 231 188-442 104-366 (445)
234 KOG4190 Uncharacterized conser 99.3 2.5E-11 5.4E-16 113.6 9.8 249 177-458 728-995 (1034)
235 KOG1064 RAVE (regulator of V-A 99.2 7.1E-11 1.5E-15 124.6 13.6 208 160-396 2186-2402(2439)
236 KOG0280 Uncharacterized conser 99.2 1.3E-09 2.9E-14 94.6 18.8 237 142-393 69-334 (339)
237 KOG4497 Uncharacterized conser 99.2 1.9E-09 4.2E-14 94.9 20.0 298 148-492 14-421 (447)
238 KOG2394 WD40 protein DMR-N9 [G 99.2 2E-10 4.4E-15 107.3 14.7 159 142-326 219-384 (636)
239 PF12937 F-box-like: F-box-lik 99.2 1E-11 2.2E-16 80.1 3.9 45 64-108 1-45 (47)
240 KOG2315 Predicted translation 99.2 1.3E-08 2.8E-13 96.2 25.5 314 143-511 35-390 (566)
241 PRK05137 tolB translocation pr 99.2 4.3E-09 9.2E-14 104.5 24.0 196 135-348 194-414 (435)
242 KOG0309 Conserved WD40 repeat- 99.2 1.7E-10 3.6E-15 111.8 12.3 286 142-453 24-341 (1081)
243 KOG4190 Uncharacterized conser 99.2 9.2E-11 2E-15 109.9 10.1 239 135-391 728-987 (1034)
244 KOG4714 Nucleoporin [Nuclear s 99.2 6.8E-10 1.5E-14 94.7 13.8 248 192-449 45-316 (319)
245 COG5354 Uncharacterized protei 99.2 4.3E-08 9.3E-13 91.7 26.2 274 140-455 69-399 (561)
246 PRK11138 outer membrane biogen 99.2 1.8E-08 3.9E-13 98.8 25.3 265 153-457 68-359 (394)
247 PRK03629 tolB translocation pr 99.2 3.8E-08 8.2E-13 97.3 27.4 205 164-393 179-407 (429)
248 PRK05137 tolB translocation pr 99.1 2.7E-08 5.9E-13 98.8 26.0 207 205-453 183-414 (435)
249 KOG0280 Uncharacterized conser 99.1 2.1E-08 4.5E-13 87.3 21.1 261 163-453 45-335 (339)
250 KOG1064 RAVE (regulator of V-A 99.1 3.5E-10 7.6E-15 119.5 11.7 219 138-385 2204-2439(2439)
251 KOG1409 Uncharacterized conser 99.1 3.5E-09 7.6E-14 93.9 15.5 240 177-453 17-272 (404)
252 TIGR02800 propeller_TolB tol-p 99.1 2.3E-08 4.9E-13 99.3 23.2 195 135-346 182-397 (417)
253 PRK11138 outer membrane biogen 99.1 7.8E-08 1.7E-12 94.3 26.5 261 153-450 119-393 (394)
254 KOG4497 Uncharacterized conser 99.1 9.7E-08 2.1E-12 84.4 23.1 264 142-444 48-425 (447)
255 PRK00178 tolB translocation pr 99.1 6.2E-08 1.3E-12 96.4 25.2 215 135-374 191-427 (430)
256 PRK04922 tolB translocation pr 99.1 4E-08 8.8E-13 97.5 23.5 205 164-393 184-412 (433)
257 PF08662 eIF2A: Eukaryotic tra 99.1 6.1E-09 1.3E-13 90.4 15.3 117 307-451 50-179 (194)
258 PF08662 eIF2A: Eukaryotic tra 99.1 3.4E-08 7.4E-13 85.8 19.7 108 236-348 58-181 (194)
259 TIGR02658 TTQ_MADH_Hv methylam 99.1 8.7E-07 1.9E-11 83.1 30.2 272 164-459 27-338 (352)
260 KOG2315 Predicted translation 99.1 8E-08 1.7E-12 91.0 22.8 265 144-453 75-392 (566)
261 KOG2314 Translation initiation 99.0 2.5E-07 5.5E-12 87.5 25.9 315 146-504 214-568 (698)
262 PF13360 PQQ_2: PQQ-like domai 99.0 3.9E-07 8.6E-12 82.8 27.3 211 163-395 2-233 (238)
263 PF10282 Lactonase: Lactonase, 99.0 4E-06 8.7E-11 80.5 34.8 273 157-451 2-322 (345)
264 PRK04792 tolB translocation pr 99.0 1.7E-07 3.6E-12 93.1 23.9 213 137-374 212-446 (448)
265 TIGR02658 TTQ_MADH_Hv methylam 99.0 3.1E-06 6.7E-11 79.5 30.3 224 150-396 53-334 (352)
266 KOG1354 Serine/threonine prote 99.0 9.8E-09 2.1E-13 91.1 12.7 275 189-493 32-349 (433)
267 KOG4547 WD40 repeat-containing 99.0 6.4E-08 1.4E-12 92.3 18.2 181 248-455 6-224 (541)
268 TIGR02800 propeller_TolB tol-p 98.9 3.3E-07 7.1E-12 91.1 24.4 153 232-393 184-355 (417)
269 PF13360 PQQ_2: PQQ-like domai 98.9 4.4E-07 9.6E-12 82.5 23.0 216 203-455 2-234 (238)
270 KOG1912 WD40 repeat protein [G 98.9 1.8E-06 4E-11 85.0 27.7 117 330-466 439-566 (1062)
271 KOG4532 WD40-like repeat conta 98.9 5.2E-07 1.1E-11 77.7 20.7 219 163-395 51-285 (344)
272 KOG4714 Nucleoporin [Nuclear s 98.9 2.3E-08 5.1E-13 85.5 12.2 232 145-390 39-316 (319)
273 PRK02889 tolB translocation pr 98.9 5.4E-07 1.2E-11 89.1 23.5 156 232-394 190-362 (427)
274 KOG1275 PAB-dependent poly(A) 98.9 2.2E-08 4.8E-13 99.8 12.6 181 246-449 146-340 (1118)
275 PF10282 Lactonase: Lactonase, 98.9 1.1E-05 2.5E-10 77.4 31.1 241 143-392 37-322 (345)
276 KOG2041 WD40 repeat protein [G 98.9 3.9E-07 8.3E-12 88.8 20.3 213 142-374 14-318 (1189)
277 PLN02919 haloacid dehalogenase 98.9 5.8E-06 1.3E-10 90.1 31.5 247 147-395 572-891 (1057)
278 KOG3914 WD repeat protein WDR4 98.8 7.1E-08 1.5E-12 87.7 12.9 146 247-400 74-231 (390)
279 KOG1275 PAB-dependent poly(A) 98.8 1.5E-07 3.3E-12 94.1 14.6 179 153-345 146-341 (1118)
280 PF00400 WD40: WD domain, G-be 98.8 1.1E-08 2.3E-13 63.2 4.2 37 134-170 3-39 (39)
281 PLN02919 haloacid dehalogenase 98.8 1.1E-05 2.4E-10 87.9 29.8 262 189-455 574-892 (1057)
282 KOG2314 Translation initiation 98.7 2.3E-06 5.1E-11 81.1 20.8 239 143-393 250-574 (698)
283 KOG1912 WD40 repeat protein [G 98.7 7.4E-07 1.6E-11 87.7 17.9 288 145-454 18-367 (1062)
284 COG2706 3-carboxymuconate cycl 98.7 5.1E-05 1.1E-09 68.8 28.0 264 163-452 15-322 (346)
285 KOG4532 WD40-like repeat conta 98.7 2.9E-06 6.2E-11 73.3 19.1 192 246-456 83-287 (344)
286 cd00216 PQQ_DH Dehydrogenases 98.7 1.1E-05 2.4E-10 81.2 26.7 280 154-459 61-432 (488)
287 COG2706 3-carboxymuconate cycl 98.7 0.00012 2.6E-09 66.5 29.6 244 138-393 35-322 (346)
288 PF04762 IKI3: IKI3 family; I 98.7 9.7E-05 2.1E-09 79.2 34.0 305 140-453 73-458 (928)
289 PRK01029 tolB translocation pr 98.7 8E-06 1.7E-10 80.6 24.2 218 137-374 179-424 (428)
290 COG4946 Uncharacterized protei 98.7 5.6E-06 1.2E-10 77.2 21.2 197 187-394 271-479 (668)
291 KOG3914 WD repeat protein WDR4 98.7 3.9E-07 8.5E-12 83.0 13.5 152 146-312 66-232 (390)
292 PRK00178 tolB translocation pr 98.7 1.3E-05 2.8E-10 79.8 25.2 154 232-394 193-365 (430)
293 KOG2066 Vacuolar assembly/sort 98.6 7.1E-07 1.5E-11 88.4 14.9 189 237-452 39-234 (846)
294 KOG2695 WD40 repeat protein [G 98.6 1.5E-07 3.3E-12 83.8 9.2 140 193-349 224-379 (425)
295 COG4946 Uncharacterized protei 98.6 0.00017 3.7E-09 67.6 28.9 165 153-334 331-506 (668)
296 KOG0309 Conserved WD40 repeat- 98.6 3.3E-07 7.2E-12 89.5 12.0 235 146-394 71-341 (1081)
297 COG5170 CDC55 Serine/threonine 98.6 2.5E-06 5.5E-11 75.1 15.5 245 141-392 25-367 (460)
298 PRK04792 tolB translocation pr 98.6 2.5E-05 5.4E-10 77.7 24.6 153 233-394 213-384 (448)
299 smart00256 FBOX A Receptor for 98.6 5E-08 1.1E-12 61.0 3.5 40 67-106 1-40 (41)
300 KOG2695 WD40 repeat protein [G 98.6 1.9E-07 4.2E-12 83.2 8.3 140 251-396 228-380 (425)
301 KOG2041 WD40 repeat protein [G 98.6 1.3E-06 2.9E-11 85.2 14.1 202 189-393 21-248 (1189)
302 PF08450 SGL: SMP-30/Gluconola 98.5 0.00064 1.4E-08 62.0 30.9 206 147-373 4-233 (246)
303 PF00400 WD40: WD domain, G-be 98.5 3.4E-07 7.4E-12 56.4 6.3 38 306-344 2-39 (39)
304 KOG2066 Vacuolar assembly/sort 98.5 4.9E-06 1.1E-10 82.6 17.3 182 142-348 39-235 (846)
305 PF00646 F-box: F-box domain; 98.5 4.4E-08 9.5E-13 63.6 1.8 44 64-107 3-46 (48)
306 COG5170 CDC55 Serine/threonine 98.5 1.2E-06 2.6E-11 77.1 10.9 278 186-492 28-356 (460)
307 PRK04043 tolB translocation pr 98.5 7.6E-05 1.6E-09 73.2 24.8 188 144-348 189-402 (419)
308 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00022 4.9E-09 61.8 24.2 273 153-453 62-353 (354)
309 KOG0882 Cyclophilin-related pe 98.5 1.3E-06 2.8E-11 80.7 10.8 264 183-457 8-311 (558)
310 KOG1645 RING-finger-containing 98.5 1.5E-05 3.2E-10 73.0 16.7 237 135-392 186-461 (463)
311 KOG3621 WD40 repeat-containing 98.4 5.6E-05 1.2E-09 74.3 21.4 158 141-305 32-199 (726)
312 PRK01029 tolB translocation pr 98.4 9.6E-05 2.1E-09 73.0 22.9 198 236-454 183-406 (428)
313 KOG0882 Cyclophilin-related pe 98.4 7.5E-06 1.6E-10 75.8 13.4 219 235-462 7-242 (558)
314 PF15492 Nbas_N: Neuroblastoma 98.4 0.00021 4.7E-09 63.0 21.4 185 146-348 47-261 (282)
315 KOG1832 HIV-1 Vpr-binding prot 98.4 3.3E-07 7.2E-12 91.3 4.3 188 135-349 1094-1294(1516)
316 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.00063 1.4E-08 59.1 22.4 218 150-394 101-353 (354)
317 KOG2114 Vacuolar assembly/sort 98.3 0.00013 2.9E-09 73.3 20.3 194 144-348 27-245 (933)
318 KOG2114 Vacuolar assembly/sort 98.3 0.0003 6.5E-09 70.9 22.4 188 186-393 27-244 (933)
319 PF03178 CPSF_A: CPSF A subuni 98.2 0.0023 5E-08 60.9 26.6 216 165-389 3-262 (321)
320 COG5354 Uncharacterized protei 98.2 0.00081 1.7E-08 63.8 21.9 127 257-394 255-397 (561)
321 PF08450 SGL: SMP-30/Gluconola 98.2 0.0052 1.1E-07 56.0 29.7 183 190-392 7-213 (246)
322 PF04762 IKI3: IKI3 family; I 98.1 0.0029 6.2E-08 68.2 28.3 230 144-394 23-335 (928)
323 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.0061 1.3E-07 61.8 28.6 186 154-350 69-337 (527)
324 cd00216 PQQ_DH Dehydrogenases 98.1 0.0033 7.2E-08 63.4 26.8 230 155-397 111-429 (488)
325 PF00780 CNH: CNH domain; Int 98.1 0.0083 1.8E-07 55.7 27.1 229 152-394 5-257 (275)
326 PF07433 DUF1513: Protein of u 98.1 0.0088 1.9E-07 54.6 26.7 221 146-388 8-281 (305)
327 KOG1645 RING-finger-containing 98.1 0.00033 7.2E-09 64.4 16.5 153 166-333 175-347 (463)
328 KOG1920 IkappaB kinase complex 98.1 0.0016 3.5E-08 68.4 23.2 205 142-348 68-324 (1265)
329 PF11768 DUF3312: Protein of u 98.0 0.0029 6.2E-08 61.7 23.3 88 298-393 239-330 (545)
330 PRK04043 tolB translocation pr 98.0 0.0068 1.5E-07 59.6 25.2 143 188-348 193-359 (419)
331 PF07433 DUF1513: Protein of u 98.0 0.0034 7.4E-08 57.2 21.0 198 129-340 43-279 (305)
332 PF15492 Nbas_N: Neuroblastoma 97.9 0.014 3E-07 51.8 26.2 229 148-403 3-270 (282)
333 PF04053 Coatomer_WDAD: Coatom 97.9 0.0054 1.2E-07 60.2 22.4 226 186-456 36-267 (443)
334 PF08596 Lgl_C: Lethal giant l 97.9 0.0038 8.2E-08 60.4 21.1 199 144-348 3-292 (395)
335 PF04841 Vps16_N: Vps16, N-ter 97.8 0.038 8.3E-07 54.2 28.8 208 148-374 34-269 (410)
336 PF11768 DUF3312: Protein of u 97.8 0.0002 4.4E-09 69.5 11.2 75 140-214 257-331 (545)
337 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0028 6E-08 48.1 14.8 96 240-341 2-109 (111)
338 PRK02888 nitrous-oxide reducta 97.7 0.029 6.2E-07 56.4 24.9 179 150-347 200-405 (635)
339 PF00780 CNH: CNH domain; Int 97.7 0.033 7.3E-07 51.7 24.5 219 191-456 4-260 (275)
340 KOG1008 Uncharacterized conser 97.7 2.1E-05 4.5E-10 76.4 2.8 242 142-393 56-336 (783)
341 KOG1832 HIV-1 Vpr-binding prot 97.7 3.9E-05 8.4E-10 77.1 4.1 191 176-397 1093-1296(1516)
342 PRK02888 nitrous-oxide reducta 97.7 0.0067 1.4E-07 60.8 19.4 266 156-453 68-406 (635)
343 PF08553 VID27: VID27 cytoplas 97.7 0.0037 8E-08 64.9 18.2 135 160-302 500-646 (794)
344 PHA02713 hypothetical protein; 97.6 0.006 1.3E-07 62.5 18.9 212 165-394 273-535 (557)
345 KOG1920 IkappaB kinase complex 97.6 0.02 4.4E-07 60.6 22.3 191 185-394 69-324 (1265)
346 PF08596 Lgl_C: Lethal giant l 97.6 0.028 6E-07 54.5 22.1 150 318-491 137-324 (395)
347 KOG3621 WD40 repeat-containing 97.6 0.0011 2.4E-08 65.6 12.4 160 279-454 38-200 (726)
348 KOG2997 F-box protein FBX9 [Ge 97.6 4.6E-05 9.9E-10 67.9 2.7 50 64-113 107-161 (366)
349 PF04053 Coatomer_WDAD: Coatom 97.6 0.04 8.6E-07 54.3 23.1 217 141-393 31-263 (443)
350 KOG2120 SCF ubiquitin ligase, 97.5 5.5E-05 1.2E-09 67.1 3.0 44 64-107 98-141 (419)
351 PF03178 CPSF_A: CPSF A subuni 97.5 0.017 3.6E-07 55.1 20.1 173 257-452 2-203 (321)
352 KOG1008 Uncharacterized conser 97.5 3.5E-05 7.6E-10 74.8 1.6 189 237-451 56-275 (783)
353 KOG4441 Proteins containing BT 97.5 0.0073 1.6E-07 61.8 18.3 189 242-453 327-548 (571)
354 KOG4441 Proteins containing BT 97.5 0.0083 1.8E-07 61.3 18.6 225 153-393 284-547 (571)
355 smart00320 WD40 WD40 repeats. 97.5 0.00015 3.3E-09 43.6 3.6 36 135-170 5-40 (40)
356 PHA02713 hypothetical protein; 97.5 0.016 3.4E-07 59.4 19.9 186 245-454 302-536 (557)
357 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.0094 2E-07 45.3 13.2 65 319-392 2-71 (111)
358 KOG3617 WD40 and TPR repeat-co 97.3 0.0038 8.2E-08 63.1 12.7 105 147-266 20-132 (1416)
359 PF06433 Me-amine-dh_H: Methyl 97.3 0.15 3.3E-06 47.4 24.0 190 148-348 100-322 (342)
360 PF05096 Glu_cyclase_2: Glutam 97.2 0.14 3E-06 46.0 23.0 178 144-335 46-249 (264)
361 COG5276 Uncharacterized conser 97.2 0.15 3.2E-06 45.8 29.6 274 145-451 89-369 (370)
362 KOG1897 Damage-specific DNA bi 97.2 0.42 9E-06 50.1 27.9 303 142-491 530-886 (1096)
363 smart00320 WD40 WD40 repeats. 97.2 0.0014 3.1E-08 39.1 5.5 37 307-344 4-40 (40)
364 PF08553 VID27: VID27 cytoplas 97.2 0.011 2.3E-07 61.6 14.6 137 194-345 493-646 (794)
365 PF06433 Me-amine-dh_H: Methyl 97.1 0.22 4.8E-06 46.3 24.7 175 164-349 17-216 (342)
366 KOG3617 WD40 and TPR repeat-co 97.1 0.021 4.6E-07 58.1 15.5 68 145-212 62-131 (1416)
367 PF06977 SdiA-regulated: SdiA- 97.1 0.22 4.8E-06 44.8 22.5 200 136-343 15-247 (248)
368 KOG2079 Vacuolar assembly/sort 96.7 0.0052 1.1E-07 64.0 8.2 107 277-391 90-202 (1206)
369 COG3386 Gluconolactonase [Carb 96.7 0.53 1.1E-05 44.0 22.0 178 196-392 39-243 (307)
370 KOG4640 Anaphase-promoting com 96.7 0.012 2.5E-07 57.9 9.6 73 142-215 20-95 (665)
371 PF04841 Vps16_N: Vps16, N-ter 96.6 0.81 1.7E-05 45.1 23.9 144 238-392 81-246 (410)
372 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.6 0.38 8.2E-06 49.0 20.6 105 246-350 68-193 (527)
373 PF14583 Pectate_lyase22: Olig 96.6 0.71 1.5E-05 43.9 21.2 163 170-348 16-224 (386)
374 KOG4640 Anaphase-promoting com 96.6 0.01 2.3E-07 58.2 8.5 84 284-375 30-116 (665)
375 PF05096 Glu_cyclase_2: Glutam 96.6 0.54 1.2E-05 42.3 23.4 177 192-381 54-250 (264)
376 KOG4341 F-box protein containi 96.6 0.0012 2.6E-08 61.7 2.0 45 63-107 71-115 (483)
377 KOG2079 Vacuolar assembly/sort 96.6 0.035 7.5E-07 58.2 12.4 68 142-211 130-202 (1206)
378 PF06977 SdiA-regulated: SdiA- 96.5 0.25 5.5E-06 44.4 16.5 202 279-491 24-239 (248)
379 PF12894 Apc4_WD40: Anaphase-p 96.5 0.01 2.2E-07 37.5 5.5 34 142-176 11-44 (47)
380 KOG3926 F-box proteins [Amino 96.5 0.0015 3.2E-08 56.9 2.1 81 61-141 199-280 (332)
381 COG3391 Uncharacterized conser 96.5 0.96 2.1E-05 44.1 24.5 188 146-348 77-285 (381)
382 TIGR03074 PQQ_membr_DH membran 96.5 1.6 3.4E-05 46.4 24.3 197 154-351 194-482 (764)
383 COG3490 Uncharacterized protei 96.4 0.19 4.2E-06 44.9 14.6 197 136-345 113-347 (366)
384 KOG2444 WD40 repeat protein [G 96.4 0.0078 1.7E-07 51.7 5.5 138 249-393 32-178 (238)
385 KOG2395 Protein involved in va 96.2 0.089 1.9E-06 51.0 12.4 139 157-303 349-500 (644)
386 PHA03098 kelch-like protein; P 96.2 0.47 1E-05 48.8 18.7 183 153-348 294-513 (534)
387 PRK13616 lipoprotein LpqB; Pro 96.1 1.1 2.4E-05 46.2 20.3 69 316-388 496-564 (591)
388 TIGR03074 PQQ_membr_DH membran 96.0 2.6 5.7E-05 44.9 23.5 68 246-313 259-354 (764)
389 PHA03098 kelch-like protein; P 96.0 0.26 5.6E-06 50.7 16.0 186 190-393 291-512 (534)
390 PF05694 SBP56: 56kDa selenium 96.0 0.94 2E-05 43.6 17.8 232 247-491 87-391 (461)
391 KOG1897 Damage-specific DNA bi 96.0 1.7 3.7E-05 45.9 20.8 143 247-393 787-943 (1096)
392 KOG2444 WD40 repeat protein [G 96.0 0.014 3E-07 50.2 5.2 102 246-348 69-179 (238)
393 PF12894 Apc4_WD40: Anaphase-p 95.9 0.026 5.6E-07 35.7 5.1 32 315-346 10-41 (47)
394 PHA02790 Kelch-like protein; P 95.8 0.64 1.4E-05 47.0 17.2 181 153-348 271-472 (480)
395 COG3823 Glutamine cyclotransfe 95.7 0.6 1.3E-05 39.8 13.6 168 153-334 55-247 (262)
396 PF02897 Peptidase_S9_N: Proly 95.6 2.7 5.9E-05 41.6 30.0 232 143-394 124-406 (414)
397 PHA02790 Kelch-like protein; P 95.6 0.55 1.2E-05 47.4 15.9 143 243-393 315-471 (480)
398 PF00930 DPPIV_N: Dipeptidyl p 95.5 2.6 5.7E-05 40.6 23.8 184 151-348 1-220 (353)
399 COG0823 TolB Periplasmic compo 95.2 0.87 1.9E-05 44.8 15.4 179 142-335 192-388 (425)
400 PF14583 Pectate_lyase22: Olig 95.1 3.4 7.3E-05 39.5 25.8 187 149-348 42-274 (386)
401 COG5276 Uncharacterized conser 94.9 2.8 6.1E-05 38.0 25.6 190 189-394 91-287 (370)
402 KOG2395 Protein involved in va 94.9 0.37 8E-06 46.9 11.2 135 196-346 348-500 (644)
403 PF12234 Rav1p_C: RAVE protein 94.6 2.1 4.5E-05 44.0 16.4 108 284-392 39-156 (631)
404 PRK13616 lipoprotein LpqB; Pro 94.4 4.5 9.8E-05 41.8 18.7 74 316-392 447-525 (591)
405 COG3490 Uncharacterized protei 94.3 3.9 8.5E-05 36.9 19.6 221 147-391 72-347 (366)
406 PF14761 HPS3_N: Hermansky-Pud 94.2 3.4 7.4E-05 35.9 16.1 154 286-451 29-214 (215)
407 PF14781 BBS2_N: Ciliary BBSom 94.2 2.3 5E-05 33.7 12.5 102 244-348 5-127 (136)
408 PF14727 PHTB1_N: PTHB1 N-term 94.0 6.6 0.00014 38.5 20.2 138 248-393 38-205 (418)
409 KOG2280 Vacuolar assembly/sort 93.8 9.2 0.0002 39.5 19.7 33 316-348 216-248 (829)
410 PF07569 Hira: TUP1-like enhan 93.2 0.7 1.5E-05 40.9 9.2 35 238-272 13-47 (219)
411 COG0823 TolB Periplasmic compo 93.2 1.9 4.2E-05 42.5 13.0 90 257-348 218-316 (425)
412 PF14727 PHTB1_N: PTHB1 N-term 93.0 9.8 0.00021 37.3 27.9 144 154-302 37-203 (418)
413 PF14655 RAB3GAP2_N: Rab3 GTPa 92.9 9.9 0.00021 37.2 23.2 72 317-394 308-400 (415)
414 PRK14131 N-acetylneuraminic ac 92.6 11 0.00024 36.8 20.2 15 428-442 339-353 (376)
415 PF10168 Nup88: Nuclear pore c 92.4 17 0.00037 38.5 22.7 35 315-349 145-182 (717)
416 PF00930 DPPIV_N: Dipeptidyl p 92.3 11 0.00024 36.3 24.4 212 142-382 42-301 (353)
417 PF10313 DUF2415: Uncharacteri 92.2 0.63 1.4E-05 28.6 5.1 31 143-173 1-34 (43)
418 PF05694 SBP56: 56kDa selenium 92.1 12 0.00027 36.3 22.4 95 255-349 220-345 (461)
419 PF08728 CRT10: CRT10; InterP 92.0 14 0.0003 38.7 17.4 109 327-450 113-245 (717)
420 PF10313 DUF2415: Uncharacteri 92.0 0.66 1.4E-05 28.5 5.0 32 317-348 1-35 (43)
421 PF08728 CRT10: CRT10; InterP 91.8 11 0.00024 39.4 16.4 108 239-346 102-246 (717)
422 PF10395 Utp8: Utp8 family; I 91.6 19 0.0004 37.3 17.6 161 142-312 129-314 (670)
423 COG3204 Uncharacterized protei 91.6 11 0.00023 34.5 15.8 156 235-393 83-264 (316)
424 PF07569 Hira: TUP1-like enhan 91.5 1.7 3.7E-05 38.5 9.4 75 273-348 9-97 (219)
425 PF10168 Nup88: Nuclear pore c 91.4 20 0.00044 38.0 18.4 32 236-267 145-181 (717)
426 KOG1900 Nuclear pore complex, 90.9 8.2 0.00018 42.5 15.0 138 252-393 94-273 (1311)
427 PF12234 Rav1p_C: RAVE protein 90.9 4.9 0.00011 41.4 13.0 100 192-303 39-156 (631)
428 COG3823 Glutamine cyclotransfe 90.9 9.7 0.00021 32.8 13.7 177 192-380 54-247 (262)
429 COG5167 VID27 Protein involved 90.0 4.3 9.4E-05 39.7 11.0 141 153-303 478-632 (776)
430 COG1520 FOG: WD40-like repeat 89.1 23 0.0005 34.4 23.6 180 154-348 68-270 (370)
431 PF06881 Elongin_A: RNA polyme 89.0 0.57 1.2E-05 36.2 3.8 49 64-114 4-52 (109)
432 TIGR03548 mutarot_permut cycli 89.0 21 0.00046 33.8 19.8 104 243-348 69-196 (323)
433 KOG4499 Ca2+-binding protein R 88.9 15 0.00033 32.3 12.4 95 238-333 158-271 (310)
434 TIGR03547 muta_rot_YjhT mutatr 88.7 23 0.0005 34.0 20.5 51 243-293 60-126 (346)
435 KOG4460 Nuclear pore complex, 88.7 14 0.0003 36.6 13.2 28 317-344 104-131 (741)
436 TIGR03548 mutarot_permut cycli 88.5 23 0.00049 33.7 20.9 62 245-306 122-197 (323)
437 KOG1898 Splicing factor 3b, su 88.3 42 0.00091 36.5 18.0 111 235-347 933-1049(1205)
438 PF14781 BBS2_N: Ciliary BBSom 88.1 12 0.00026 29.8 12.3 109 147-271 3-131 (136)
439 PF13013 F-box-like_2: F-box-l 88.0 0.62 1.3E-05 35.7 3.2 35 58-92 16-50 (109)
440 COG3204 Uncharacterized protei 87.8 22 0.00047 32.6 19.5 165 138-305 81-265 (316)
441 COG3386 Gluconolactonase [Carb 87.6 25 0.00054 33.0 23.7 88 280-374 168-264 (307)
442 COG4590 ABC-type uncharacteriz 87.4 10 0.00022 36.7 11.3 166 133-307 211-390 (733)
443 PRK10115 protease 2; Provision 87.4 44 0.00095 35.6 28.9 192 143-346 127-344 (686)
444 PF14655 RAB3GAP2_N: Rab3 GTPa 87.0 4.4 9.6E-05 39.6 9.2 80 135-214 300-400 (415)
445 KOG1900 Nuclear pore complex, 86.6 5.2 0.00011 44.0 10.1 188 133-348 70-274 (1311)
446 PF08801 Nucleoporin_N: Nup133 86.4 31 0.00067 34.2 15.3 32 317-348 190-221 (422)
447 KOG4499 Ca2+-binding protein R 86.1 23 0.00051 31.2 13.2 86 196-287 172-264 (310)
448 KOG1898 Splicing factor 3b, su 85.9 18 0.00039 39.1 13.2 130 257-393 912-1049(1205)
449 KOG1983 Tomosyn and related SN 85.6 14 0.0003 40.9 13.1 30 143-172 36-65 (993)
450 PF14870 PSII_BNR: Photosynthe 85.4 32 0.0007 32.2 30.5 139 246-388 113-257 (302)
451 KOG2063 Vacuolar assembly/sort 85.0 61 0.0013 35.1 20.4 113 276-396 157-272 (877)
452 KOG2377 Uncharacterized conser 84.8 22 0.00048 34.6 12.2 146 285-453 34-187 (657)
453 TIGR03547 muta_rot_YjhT mutatr 84.6 39 0.00084 32.4 21.0 37 257-293 168-208 (346)
454 PF15390 DUF4613: Domain of un 84.2 51 0.0011 33.5 17.1 146 237-393 19-187 (671)
455 PF10433 MMS1_N: Mono-function 84.1 53 0.0011 33.5 21.6 232 192-454 220-479 (504)
456 COG5167 VID27 Protein involved 83.6 27 0.00058 34.6 12.3 133 251-392 484-632 (776)
457 KOG1916 Nuclear protein, conta 83.5 2.4 5.3E-05 44.3 5.8 118 144-270 185-328 (1283)
458 PF08801 Nucleoporin_N: Nup133 83.5 24 0.00052 35.0 13.0 27 426-452 192-220 (422)
459 TIGR02276 beta_rpt_yvtn 40-res 83.3 6.1 0.00013 23.8 5.7 30 284-313 1-32 (42)
460 KOG1916 Nuclear protein, conta 82.9 2.8 6E-05 44.0 5.9 58 327-391 194-264 (1283)
461 PF14269 Arylsulfotran_2: Aryl 82.9 42 0.0009 31.5 13.5 67 145-211 146-219 (299)
462 COG3391 Uncharacterized conser 82.6 50 0.0011 32.2 27.2 230 145-394 33-285 (381)
463 KOG3630 Nuclear pore complex, 82.4 25 0.00053 38.5 12.5 79 291-374 174-253 (1405)
464 PF14870 PSII_BNR: Photosynthe 82.0 45 0.00098 31.2 23.6 143 240-390 64-213 (302)
465 PLN02153 epithiospecifier prot 81.7 50 0.0011 31.6 20.8 103 245-348 31-169 (341)
466 PLN03215 ascorbic acid mannose 81.4 1.3 2.8E-05 42.3 2.9 37 64-100 4-41 (373)
467 PLN02193 nitrile-specifier pro 81.2 65 0.0014 32.6 19.3 146 153-307 175-355 (470)
468 KOG2714 SETA binding protein S 81.2 55 0.0012 31.7 14.0 33 420-452 427-460 (465)
469 KOG4408 Putative Mg2+ and Co2+ 80.8 0.49 1.1E-05 43.3 -0.1 49 64-112 8-56 (386)
470 KOG3616 Selective LIM binding 80.6 47 0.001 34.6 13.2 67 142-211 14-82 (1636)
471 PRK14131 N-acetylneuraminic ac 80.3 60 0.0013 31.6 19.2 62 153-214 38-116 (376)
472 PLN02153 epithiospecifier prot 79.8 58 0.0013 31.2 20.6 62 153-214 32-111 (341)
473 PF07995 GSDH: Glucose / Sorbo 79.8 21 0.00045 34.1 10.6 55 318-374 3-58 (331)
474 TIGR03606 non_repeat_PQQ dehyd 79.7 41 0.00089 33.5 12.6 60 316-376 29-90 (454)
475 KOG1983 Tomosyn and related SN 79.3 44 0.00095 37.2 13.9 74 360-455 194-268 (993)
476 KOG2063 Vacuolar assembly/sort 79.2 86 0.0019 34.0 15.4 79 189-269 21-100 (877)
477 PF14779 BBS1: Ciliary BBSome 78.3 52 0.0011 29.8 16.1 139 241-388 18-254 (257)
478 smart00564 PQQ beta-propeller 77.2 9.1 0.0002 21.6 4.7 25 248-272 7-31 (33)
479 PRK13684 Ycf48-like protein; P 76.4 73 0.0016 30.4 25.8 242 128-390 75-329 (334)
480 COG4590 ABC-type uncharacteriz 74.9 18 0.0004 35.0 8.3 153 282-454 228-389 (733)
481 KOG1896 mRNA cleavage and poly 74.9 71 0.0015 35.4 13.3 139 248-393 1047-1214(1366)
482 PF02897 Peptidase_S9_N: Proly 74.7 92 0.002 30.7 25.0 194 147-349 174-407 (414)
483 KOG3630 Nuclear pore complex, 73.9 47 0.001 36.5 11.6 139 192-333 110-260 (1405)
484 PF12341 DUF3639: Protein of u 73.8 11 0.00023 20.6 3.8 25 366-390 3-27 (27)
485 PF11715 Nup160: Nucleoporin N 73.6 8.2 0.00018 39.9 6.5 40 143-182 215-258 (547)
486 TIGR03118 PEPCTERM_chp_1 conse 73.1 80 0.0017 29.3 20.2 213 145-372 25-305 (336)
487 smart00564 PQQ beta-propeller 73.0 11 0.00024 21.2 4.3 26 155-180 7-32 (33)
488 PF11715 Nup160: Nucleoporin N 72.3 20 0.00043 37.1 8.9 33 318-350 216-252 (547)
489 KOG2247 WD40 repeat-containing 72.2 0.43 9.4E-06 46.1 -2.9 132 246-386 45-182 (615)
490 PF01011 PQQ: PQQ enzyme repea 72.1 12 0.00027 22.1 4.5 25 250-274 3-27 (38)
491 PLN02193 nitrile-specifier pro 71.9 1.2E+02 0.0025 30.7 22.7 145 244-394 226-412 (470)
492 TIGR02276 beta_rpt_yvtn 40-res 71.7 19 0.00041 21.5 5.7 23 326-348 1-24 (42)
493 PF02333 Phytase: Phytase; In 70.8 1.1E+02 0.0023 29.8 24.0 191 152-348 66-292 (381)
494 PF07250 Glyoxal_oxid_N: Glyox 69.4 87 0.0019 28.2 13.8 150 297-457 48-203 (243)
495 PF12768 Rax2: Cortical protei 69.0 78 0.0017 29.3 10.9 97 295-399 16-130 (281)
496 PF13570 PQQ_3: PQQ-like domai 66.9 14 0.00031 22.1 4.0 22 191-212 18-39 (40)
497 COG1520 FOG: WD40-like repeat 66.5 1.3E+02 0.0028 29.2 28.4 188 194-394 68-270 (370)
498 PLN00033 photosystem II stabil 66.0 1.4E+02 0.003 29.3 30.4 144 284-448 248-396 (398)
499 COG3292 Predicted periplasmic 65.7 1.6E+02 0.0035 30.0 17.6 145 142-301 164-316 (671)
500 TIGR02604 Piru_Ver_Nterm putat 65.5 1.4E+02 0.003 29.0 13.8 75 316-392 13-99 (367)
No 1
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=5.8e-56 Score=384.17 Aligned_cols=388 Identities=20% Similarity=0.274 Sum_probs=326.4
Q ss_pred cceehhhhccccCCccC--CcccccCcccccccCCC----HHHHHHHccCCChhhhHHHhhhhhhHHHhhcCcchhhhhh
Q 009993 35 NFEIEATKSTLESKQLP--CNDVLSNLHRSTITDLP----PALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFY 108 (520)
Q Consensus 35 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~LP----~el~~~i~~~L~~~~l~~~s~v~~~~~~~~~~~~lW~~~~ 108 (520)
-..+..++++.|..|.. -+.++|++++||++.|| +++...||+|||..+|+.|..||+.|++++++..+||+++
T Consensus 44 vdfv~~ll~~m~hyq~g~v~n~~rpmLqrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLi 123 (499)
T KOG0281|consen 44 VDFVEHLISRMCHYQHGHINNYLKPMLQRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLI 123 (499)
T ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 34556777887877777 79999999999999999 9999999999999999999999999999999999999886
Q ss_pred hhh------c-CC-----CCCC----CCCCC----CCCCcccHHHh-----------------hhhh---ccccccEEEE
Q 009993 109 CER------W-GL-----PIAS----APLGA----GFSDDKSWKEL-----------------IDVL---YGHTEAVLTV 148 (520)
Q Consensus 109 ~~~------~-~~-----~~~~----~~~~~----~~~~~~~W~~~-----------------~~~l---~~h~~~V~~l 148 (520)
-+. | ++ |... .+... .......|..+ ++.+ ....+.|+|+
T Consensus 124 e~~vr~dslWrgl~e~rqw~~~lf~~r~~~~~~~~n~f~~~l~pki~~di~~idsNWr~Gr~~~~rinc~Se~skgVYCl 203 (499)
T KOG0281|consen 124 ERMVRTDSLWRGLSERRQWDQYLFKNRPNDGGFPPNSFYRLLYPKIIQDIETIESNWRCGRHLLQRINCRSENSKGVYCL 203 (499)
T ss_pred HHhcchHHHHhhhhhccCcchhhccCCCCcCCcCCCcchhhhhHHHHHHHhhhhcchhccceeeeeecCCcccCCceEEE
Confidence 442 1 10 1100 01111 11111233322 1111 2346789999
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCcccc
Q 009993 149 FVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQN 228 (520)
Q Consensus 149 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 228 (520)
++ |...+++|..|.+|+|||..+..++..+.+|++.|.|+..+.+.+++|+.|.+|++||+++++
T Consensus 204 QY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge------------- 268 (499)
T KOG0281|consen 204 QY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGE------------- 268 (499)
T ss_pred Ee--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCc-------------
Confidence 99 567899999999999999999999999999999999999999999999999999999999874
Q ss_pred ceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEE---Ee-eeccCEEEEeeCCCEEEEEc-CCeEEEEECC
Q 009993 229 TQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLK---VL-RHSDWVYGLAPHDTTVASTS-GSDVYIWDTN 303 (520)
Q Consensus 229 ~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~---~~-~~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~ 303 (520)
+...+.+|...|..+.|+.++++++|.|.++.+||+.+...+. .+ .|...|+.+..+.+++++++ |.+|++|++.
T Consensus 269 ~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~s 348 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTS 348 (499)
T ss_pred hhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEecc
Confidence 5667889999999999999999999999999999998765332 22 28999999999999999999 9999999999
Q ss_pred CCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCC
Q 009993 304 SGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGD 383 (520)
Q Consensus 304 ~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d 383 (520)
+++.++++. +|...|-|+.+ .++++++|+.|.+|++||+..+ .++..+.||..-|.|+.|+...+++|+.|
T Consensus 349 t~efvRtl~-gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G------~cLRvLeGHEeLvRciRFd~krIVSGaYD 419 (499)
T KOG0281|consen 349 TCEFVRTLN-GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG------ACLRVLEGHEELVRCIRFDNKRIVSGAYD 419 (499)
T ss_pred ceeeehhhh-cccccceehhc--cCeEEEecCCCceEEEEecccc------HHHHHHhchHHhhhheeecCceeeecccc
Confidence 999999997 79999999887 6899999999999999999999 89999999999999999999999999999
Q ss_pred CcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhH
Q 009993 384 GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEI 456 (520)
Q Consensus 384 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~ 456 (520)
|+|+|||+.....+..+.. ..+...+..|++.|+.+.|+...+++++.|.+|-|||+.++..-
T Consensus 420 GkikvWdl~aaldpra~~~----------~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 420 GKIKVWDLQAALDPRAPAS----------TLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ceEEEEecccccCCccccc----------chHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCCcc
Confidence 9999999998654432211 23455677899999999999999999999999999999887543
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-49 Score=349.41 Aligned_cols=328 Identities=23% Similarity=0.356 Sum_probs=280.7
Q ss_pred ChhhhHHHhhhhhhHHHhhcCcchhhhhhhhhcCCCCCCCCCCCCCCCcccHH----HhhhhhccccccEEEEEEccCCC
Q 009993 80 DPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAK 155 (520)
Q Consensus 80 ~~~~l~~~s~v~~~~~~~~~~~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~ 155 (520)
.|+...++..|-|.-..+. .|. ..+.|.+|++....+..++|+...++|+ ....+.+||...|.|++|+|||+
T Consensus 94 qpqavfrvrpvtrCssS~~-GH~--e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk 170 (480)
T KOG0271|consen 94 QPQAVFRVRPVTRCSSSIA-GHG--EAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGK 170 (480)
T ss_pred ccchhhcccccceeccccC-CCC--CcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcc
Confidence 4566666666666555554 333 3578999994334456678888889999 55778999999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCcEE-EEeCCCCceEEEEe-------cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccc
Q 009993 156 LLFTSGYDSIVRMWHLEDGFSI-ASSKPLGCTIRAVA-------ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQ 227 (520)
Q Consensus 156 ~l~sgs~dg~v~vwd~~~~~~~-~~~~~~~~~v~~~~-------~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~ 227 (520)
.||+|+.||+|++||..+|+++ ..+.+|...|++++ |..++|++++.||.|+|||+..+
T Consensus 171 ~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~------------- 237 (480)
T KOG0271|consen 171 KIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG------------- 237 (480)
T ss_pred hhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc-------------
Confidence 9999999999999999998765 56899999999887 56779999999999999998665
Q ss_pred cceEEeccCCCCeEEEEEc-CCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEeeC-------------C------
Q 009993 228 NTQFRLWEHEGPITSLALD-LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPH-------------D------ 286 (520)
Q Consensus 228 ~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~-------------~------ 286 (520)
.++..+.+|+.+|+|+.|. .+++++||.|++|++|+...|.+.+.+. |..+|+.++.+ +
T Consensus 238 ~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~ 317 (480)
T KOG0271|consen 238 TCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF 317 (480)
T ss_pred eEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence 3778899999999999995 5899999999999999999999999987 99999887622 2
Q ss_pred -------------------CEEEEEc-CCeEEEEECCCCe-eeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEc
Q 009993 287 -------------------TTVASTS-GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI 345 (520)
Q Consensus 287 -------------------~~l~~~~-d~~i~iwd~~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~ 345 (520)
..+++|+ |.++.+|+....+ ++..+. +|..-|+.+.|+||++++|+++.|..|++||.
T Consensus 318 se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmt-gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g 396 (480)
T KOG0271|consen 318 SEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMT-GHQALVNHVSFSPDGRYIASASFDKSVKLWDG 396 (480)
T ss_pred HHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhh-chhhheeeEEECCCccEEEEeecccceeeeeC
Confidence 3499999 7999999987654 555554 79999999999999999999999999999999
Q ss_pred ccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcc
Q 009993 346 INDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE 423 (520)
Q Consensus 346 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (520)
+++ +.+.++.+|-++|+.++|+. ++|++|+.|.++++||+++ .....-+.||.
T Consensus 397 ~tG------k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t-------------------kKl~~DLpGh~ 451 (480)
T KOG0271|consen 397 RTG------KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT-------------------KKLKQDLPGHA 451 (480)
T ss_pred CCc------chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeee-------------------eeecccCCCCC
Confidence 999 88999999999999999965 5999999999999999998 34445578899
Q ss_pred eeeEEEEecCC--EEEEecCCCeEEEEe
Q 009993 424 CNLLSVDIGAD--RIVCGGEEGIVRIWN 449 (520)
Q Consensus 424 ~~v~~~~~~~~--~l~sg~~Dg~v~iwd 449 (520)
..|++++++++ ++++|+.|..+++|.
T Consensus 452 DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 452 DEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999887655 999999999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-48 Score=342.06 Aligned_cols=312 Identities=25% Similarity=0.343 Sum_probs=275.8
Q ss_pred hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009993 134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA 211 (520)
Q Consensus 134 ~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~ 211 (520)
+...+.||.++|.|++|+|+|..|+||+.|.++|+||+.+..+..+.++|...|.|++ |||+.|++|+.||+|++||.
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 3556889999999999999999999999999999999999999999999999998887 99999999999999999999
Q ss_pred ccCcceeeeccCCccccceEEeccCCCCeEEEEEc-------CCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe
Q 009993 212 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD-------LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA 283 (520)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-------~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~ 283 (520)
+++. .....+.+|...|++++|. ..+|++++.||+|+|||+..+.++..+. |..+|+|+.
T Consensus 187 ktg~------------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvr 254 (480)
T KOG0271|consen 187 KTGQ------------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVR 254 (480)
T ss_pred CCCC------------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEE
Confidence 8884 3456788999999999993 3679999999999999999999999887 999999999
Q ss_pred eC-CCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEec-----------CCC----------------------
Q 009993 284 PH-DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARS-----------HTG---------------------- 328 (520)
Q Consensus 284 ~~-~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s-----------~~~---------------------- 328 (520)
.. ..++++++ |++|++|+...|.+...+. +|...|+.++.+ |.+
T Consensus 255 wGG~gliySgS~DrtIkvw~a~dG~~~r~lk-GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~ 333 (480)
T KOG0271|consen 255 WGGEGLIYSGSQDRTIKVWRALDGKLCRELK-GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLK 333 (480)
T ss_pred EcCCceEEecCCCceEEEEEccchhHHHhhc-ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhc
Confidence 65 67889999 9999999999999999987 799999999876 223
Q ss_pred ---CEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCC
Q 009993 329 ---DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSG 403 (520)
Q Consensus 329 ---~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 403 (520)
..+++|++|.++.+|+..... +++..+.+|..-|+.+.|+| .++++++-|.+|++||.+++
T Consensus 334 ~~~erlVSgsDd~tlflW~p~~~k-----kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG--------- 399 (480)
T KOG0271|consen 334 DSGERLVSGSDDFTLFLWNPFKSK-----KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG--------- 399 (480)
T ss_pred cCcceeEEecCCceEEEecccccc-----cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc---------
Confidence 359999999999999987663 57888999999999999988 69999999999999999984
Q ss_pred CceeeeeecCCCcccccCcceeeEEEEecCC--EEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeee
Q 009993 404 KRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEM 481 (520)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (520)
.....+.||-..|+.++++.+ +|++|+.|.++++|++++.+....+ ..+..++..+.|
T Consensus 400 ----------k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL----------pGh~DEVf~vDw 459 (480)
T KOG0271|consen 400 ----------KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL----------PGHADEVFAVDW 459 (480)
T ss_pred ----------chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccC----------CCCCceEEEEEe
Confidence 455668999999999999877 9999999999999999987654332 223456899999
Q ss_pred ccCCCcccccc
Q 009993 482 SSKGGRTDQCS 492 (520)
Q Consensus 482 s~~g~~~~~~s 492 (520)
+|||.+.++..
T Consensus 460 spDG~rV~sgg 470 (480)
T KOG0271|consen 460 SPDGQRVASGG 470 (480)
T ss_pred cCCCceeecCC
Confidence 99999988754
No 4
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=6.7e-45 Score=356.45 Aligned_cols=398 Identities=24% Similarity=0.355 Sum_probs=338.7
Q ss_pred cccchhhhhhhccccceehhhhccccCCccC--CcccccCcccccccCCCHHHHHHHccCCChhhhHHHhhhhhhHHHhh
Q 009993 21 DSLQSQIESELNNLNFEIEATKSTLESKQLP--CNDVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLA 98 (520)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~LP~el~~~i~~~L~~~~l~~~s~v~~~~~~~~ 98 (520)
.....++......+++.+..++..|+..++. .+.+.+..++||+..||.|+..+||.|||+++|+.+++||+.|+.++
T Consensus 63 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~ 142 (537)
T KOG0274|consen 63 NLIAQFSSLSEKEKKLLLDRLLDSSGPSQLSELGNLLEPLGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLL 142 (537)
T ss_pred heeehhcccchhhhceeeeeeccccCchhhhhhhhhcccccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhh
Confidence 3334455555666777888888888888887 56669999999999999999999999999999999999999999999
Q ss_pred cCcchhhhhhhhhcCC--CCCCC-CCCCCCCCcccHHHh------------------hhhhcc-ccccEEEEEEccCCCE
Q 009993 99 SDHHAWKEFYCERWGL--PIASA-PLGAGFSDDKSWKEL------------------IDVLYG-HTEAVLTVFVLASAKL 156 (520)
Q Consensus 99 ~~~~lW~~~~~~~~~~--~~~~~-~~~~~~~~~~~W~~~------------------~~~l~~-h~~~V~~l~~~~~~~~ 156 (520)
.++..|.+.+....+. |...- .........+.|+.. ...+.+ |...|.+..|. +.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~--~~~ 220 (537)
T KOG0274|consen 143 DDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWKSFYRRRFRLSKNWRKLFRRGYKVLLGTDDHVVLCLQLH--DGF 220 (537)
T ss_pred hccchhhhhhhhhcccCCcccCcccccccccccchhhhhhhhhhhccccccccccccceeecccCcchhhhheee--cCe
Confidence 9999888755443321 11111 001111223455522 233444 67788999887 668
Q ss_pred EEEEeCCCeEEEEECCCCcEEEE-eCCCCceEEEEecC--CCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEe
Q 009993 157 LFTSGYDSIVRMWHLEDGFSIAS-SKPLGCTIRAVAAD--KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL 233 (520)
Q Consensus 157 l~sgs~dg~v~vwd~~~~~~~~~-~~~~~~~v~~~~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 233 (520)
+++++.|++|++||..++..+.. +.+|...|.++... +.++++|+.|.++++||..++. +...+
T Consensus 221 ~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~-------------C~~~l 287 (537)
T KOG0274|consen 221 FKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE-------------CTHSL 287 (537)
T ss_pred EEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-------------EEEEe
Confidence 99999999999999999999988 99999999999855 8999999999999999988874 78889
Q ss_pred ccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEe
Q 009993 234 WEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVV 311 (520)
Q Consensus 234 ~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~ 311 (520)
.+|.+.|.++...+..+++|+.|.+|++|++.++.++..+. |.++|.++..++.++++|+ |++|++||+.+++++..+
T Consensus 288 ~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl 367 (537)
T KOG0274|consen 288 QGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSL 367 (537)
T ss_pred cCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeee
Confidence 99999999999999999999999999999999999999999 9999999999999999999 999999999999999999
Q ss_pred ecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeC
Q 009993 312 NGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDV 391 (520)
Q Consensus 312 ~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~ 391 (520)
. +|...|+++.+.+. ..+++|+.|++|++||+++.. .++.++.+|.+.|..+.+..++|++++.|++|++||.
T Consensus 368 ~-gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~-----~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~ 440 (537)
T KOG0274|consen 368 S-GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR-----KCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDA 440 (537)
T ss_pred c-CCcceEEEEEecCc-ceEEeeeeccceEeecCCchh-----hhhhhhcCCcccccccccccceeEeccccccEEEeec
Confidence 8 69999999988655 899999999999999999884 5889999999999999999999999999999999999
Q ss_pred CcccccCCCCCCCceeeeeecCCCcccccC-cceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHH
Q 009993 392 RKLLRSGRPTSGKRVSRVIEVEPPQRMLHG-FECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERR 459 (520)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~ 459 (520)
.++ .+.+.+.+ |...+.++......+++++.||++++||++++...+..
T Consensus 441 ~~~-------------------~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 441 EEG-------------------ECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ccC-------------------ceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchhhhh
Confidence 883 44455555 66788888887679999999999999999999888765
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.3e-43 Score=313.73 Aligned_cols=272 Identities=22% Similarity=0.342 Sum_probs=249.8
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cC--CCEEEEEeCCCcEEEEEcccC
Q 009993 139 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--AD--KKLLVAGGTDGFIHCWRAVEV 214 (520)
Q Consensus 139 ~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~--~~~l~sg~~dg~i~vwd~~~~ 214 (520)
-|-+.+|..+.|+++++.|+|||.+|.++||+..+...+.++.+|...+.++. |. +..+++|+.||++++|++.+.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 46788999999999999999999999999999999999999999999988776 54 668999999999999998664
Q ss_pred cceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEE
Q 009993 215 LPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTV 289 (520)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l 289 (520)
.++..+.+|...|..++| +|++|+|++.|.+-++||++++..+.... |...|.+++ ++|.++
T Consensus 252 -------------~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~ 318 (459)
T KOG0272|consen 252 -------------TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLA 318 (459)
T ss_pred -------------cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCcee
Confidence 366788899999999999 88999999999999999999998776665 999999988 999999
Q ss_pred EEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEE
Q 009993 290 ASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN 368 (520)
Q Consensus 290 ~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~ 368 (520)
++|+ |..-+|||+++|.++..+. +|..+|.+++|+|+|-.||||+.|++++|||++.. ..+.++.+|..-|+
T Consensus 319 ~tGGlD~~~RvWDlRtgr~im~L~-gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r------~~ly~ipAH~nlVS 391 (459)
T KOG0272|consen 319 ATGGLDSLGRVWDLRTGRCIMFLA-GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR------SELYTIPAHSNLVS 391 (459)
T ss_pred eccCccchhheeecccCcEEEEec-ccccceeeEeECCCceEEeecCCCCcEEEeeeccc------ccceecccccchhh
Confidence 9999 9999999999999999987 69999999999999999999999999999999998 67999999999999
Q ss_pred EEEecC---CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EEEEecCCC
Q 009993 369 SLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEG 443 (520)
Q Consensus 369 ~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg 443 (520)
.|.|+| .+|+|++.|++++||..++ ..+.+.+.||...|.+++..++ .++|++.|.
T Consensus 392 ~Vk~~p~~g~fL~TasyD~t~kiWs~~~-------------------~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DR 452 (459)
T KOG0272|consen 392 QVKYSPQEGYFLVTASYDNTVKIWSTRT-------------------WSPLKSLAGHEGKVISLDISPDSQAIATSSFDR 452 (459)
T ss_pred heEecccCCeEEEEcccCcceeeecCCC-------------------cccchhhcCCccceEEEEeccCCceEEEeccCc
Confidence 999986 6999999999999999988 4566778999999998887655 899999999
Q ss_pred eEEEEe
Q 009993 444 IVRIWN 449 (520)
Q Consensus 444 ~v~iwd 449 (520)
++++|.
T Consensus 453 T~KLW~ 458 (459)
T KOG0272|consen 453 TIKLWR 458 (459)
T ss_pred eeeecc
Confidence 999995
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.6e-41 Score=288.36 Aligned_cols=282 Identities=20% Similarity=0.282 Sum_probs=245.9
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcc
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAV 212 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~ 212 (520)
.++|+||.+.|+++.|++|.++++++|.||.+.|||.-+...+..++-....|... +|.+++++.|+.|+...||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 48899999999999999999999999999999999999988888777777777654 5999999999999999999987
Q ss_pred cCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--e-CCC
Q 009993 213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--P-HDT 287 (520)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~-~~~ 287 (520)
+... .........+.+|++.+.|..| +.+.|+++|.|.+..+||+++++.+..+. |.+.|.+++ | +++
T Consensus 128 ~~d~-------~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 128 TRDA-------EGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred cccc-------cccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 5421 1123455678999999999999 88999999999999999999999999997 999999988 6 899
Q ss_pred EEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec--CCc
Q 009993 288 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI--PHT 364 (520)
Q Consensus 288 ~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~--~h~ 364 (520)
.+++|+ |+..++||++.+.+++.|. +|...|+++.|.|+|.-+++|++|++.++||++.. ..+..+. .-.
T Consensus 201 tFvSg~cD~~aklWD~R~~~c~qtF~-ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD------~~~a~ys~~~~~ 273 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQCVQTFE-GHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD------QELAVYSHDSII 273 (343)
T ss_pred eEEecccccceeeeeccCcceeEeec-ccccccceEEEccCCCeeeecCCCceeEEEeecCC------cEEeeeccCccc
Confidence 999999 9999999999999999998 79999999999999999999999999999999998 3344443 335
Q ss_pred CCEEEEEe--cCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEe--cCCEEEEec
Q 009993 365 GPVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--GADRIVCGG 440 (520)
Q Consensus 365 ~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~ 440 (520)
.+|++++| ++++|++|..|.++.+||.-.. .....+.||...|.++.. +|..++||+
T Consensus 274 ~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~-------------------e~vg~L~GHeNRvScl~~s~DG~av~TgS 334 (343)
T KOG0286|consen 274 CGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-------------------ERVGVLAGHENRVSCLGVSPDGMAVATGS 334 (343)
T ss_pred CCceeEEEcccccEEEeeecCCceeEeecccc-------------------ceEEEeeccCCeeEEEEECCCCcEEEecc
Confidence 68999999 4689999999999999998763 334556788888777665 555999999
Q ss_pred CCCeEEEEe
Q 009993 441 EEGIVRIWN 449 (520)
Q Consensus 441 ~Dg~v~iwd 449 (520)
+|.++|||.
T Consensus 335 WDs~lriW~ 343 (343)
T KOG0286|consen 335 WDSTLRIWA 343 (343)
T ss_pred hhHheeecC
Confidence 999999994
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-39 Score=270.79 Aligned_cols=277 Identities=20% Similarity=0.354 Sum_probs=243.1
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEE
Q 009993 155 KLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR 232 (520)
Q Consensus 155 ~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 232 (520)
-+|+|+|+|.+||+|...+|.+..+++-....|..+. |+++.|++|+. ..|++||+.++. ..++.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~n-----------p~Pv~t 78 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNN-----------PNPVAT 78 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCC-----------CCceeE
Confidence 4899999999999999999999999987777776665 89999988876 579999998874 337888
Q ss_pred eccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCee
Q 009993 233 LWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCL 307 (520)
Q Consensus 233 ~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~ 307 (520)
+.+|+..|+++.| +|+.+++||+||+++|||++...+.+.+.+..+|+++. |+...|++|. +|.|++||+....+
T Consensus 79 ~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c 158 (311)
T KOG0315|consen 79 FEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSC 158 (311)
T ss_pred EeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcc
Confidence 9999999999999 89999999999999999999999999999999999988 7777888888 89999999999877
Q ss_pred eEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCc
Q 009993 308 LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGK 385 (520)
Q Consensus 308 ~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~ 385 (520)
...+.......|.++...|||..++.+...|..++|++-+......+.++..+..|.+.+..+.++| .+|+++|.|.+
T Consensus 159 ~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt 238 (311)
T KOG0315|consen 159 THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT 238 (311)
T ss_pred ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce
Confidence 7776655677899999999999999999999999999988877778889999999999999999987 69999999999
Q ss_pred EEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EEEEecCCCeEEEEeCCchHhHHHHhh
Q 009993 386 LSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRAR 461 (520)
Q Consensus 386 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~~ 461 (520)
++||+..+. -.....+.+|...++...|+.+ +|+||+.|+.+++|+++.++++++...
T Consensus 239 v~iwn~~~~------------------~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 239 VKIWNTDDF------------------FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQG 298 (311)
T ss_pred EEEEecCCc------------------eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCC
Confidence 999999874 1223456788888888777655 999999999999999999987765433
No 8
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=9.3e-41 Score=289.84 Aligned_cols=273 Identities=22% Similarity=0.348 Sum_probs=240.4
Q ss_pred hhhhhhcCCCCCCCCCCCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC
Q 009993 106 EFYCERWGLPIASAPLGAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK 181 (520)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~ 181 (520)
.+||.++. +....++..+...++|+ .+.++|.||++.|.|+.| +.+.+++||.|.+|+|||+++|+++.++-
T Consensus 199 gVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tli 274 (499)
T KOG0281|consen 199 GVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLI 274 (499)
T ss_pred ceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHh
Confidence 34665553 33333444456679998 779999999999999999 57799999999999999999999999999
Q ss_pred CCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEE
Q 009993 182 PLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRV 261 (520)
Q Consensus 182 ~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~i 261 (520)
.|...|..+..++.++++++.|.++.+||+.... .......+.||...|+.+.|+.++++++|.|.+|++
T Consensus 275 hHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps----------~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikv 344 (499)
T KOG0281|consen 275 HHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPT----------DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKV 344 (499)
T ss_pred hhcceeEEEEEeCCEEEEecCCceeEEEeccCch----------HHHHHHHHhhhhhheeeeccccceEEEecCCceEEE
Confidence 9999999999999999999999999999986542 233455678999999999999999999999999999
Q ss_pred EECCCCcEEEEee-eccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCe
Q 009993 262 WDRALLKCLKVLR-HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA 339 (520)
Q Consensus 262 wd~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~ 339 (520)
|++.++++++++. |...|.|+...++++++|+ |.+|++||+..|.+++.+. ||..-|.++.| +.+.+++|+.||+
T Consensus 345 W~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLe-GHEeLvRciRF--d~krIVSGaYDGk 421 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRF--DNKRIVSGAYDGK 421 (499)
T ss_pred EeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHh-chHHhhhheee--cCceeeeccccce
Confidence 9999999999997 9999999999999999999 9999999999999999997 79999999999 5788999999999
Q ss_pred EEEEEcccCccc---cceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCccc
Q 009993 340 IHMYEIINDCTE---ANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLL 395 (520)
Q Consensus 340 i~iwd~~~~~~~---~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~ 395 (520)
|++||+..+..+ ....++.++..|++.|..+.|+...+++++.|.+|-|||+.++.
T Consensus 422 ikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 422 IKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred EEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCC
Confidence 999999876443 22246777889999999999999999999999999999998753
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.4e-38 Score=264.46 Aligned_cols=285 Identities=21% Similarity=0.367 Sum_probs=234.2
Q ss_pred hhhhccccccEEEEEEccC-CCEEEEEeCCCeEEEEECC-----CCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcE
Q 009993 135 IDVLYGHTEAVLTVFVLAS-AKLLFTSGYDSIVRMWHLE-----DGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFI 206 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~-~~~l~sgs~dg~v~vwd~~-----~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i 206 (520)
..+|+||++.|+.++..+. .+.+++++.|.++.+|++. .|..++.+.+|...|..+. +++++.++++.|+++
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l 87 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL 87 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence 4578999999999999886 5789999999999999885 4677889999998887654 999999999999999
Q ss_pred EEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee---eccCEEE
Q 009993 207 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYG 281 (520)
Q Consensus 207 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~ 281 (520)
++||+.+++ ....+.+|...|.+++| |...+++|+.|.+|++||+... +..++. +.++|.|
T Consensus 88 rlWDl~~g~-------------~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVsc 153 (315)
T KOG0279|consen 88 RLWDLATGE-------------STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSC 153 (315)
T ss_pred EEEEecCCc-------------EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEE
Confidence 999998863 66788999999999999 6789999999999999998654 444443 3789999
Q ss_pred Ee--eC--CCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceee
Q 009993 282 LA--PH--DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL 356 (520)
Q Consensus 282 ~~--~~--~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~ 356 (520)
+. |+ ..++++++ |++|++||+++.+....+. +|.+.++.++++|||.+.++|+.||.+.+||++.+ +.
T Consensus 154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~------k~ 226 (315)
T KOG0279|consen 154 VRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG------KN 226 (315)
T ss_pred EEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc-cccccEEEEEECCCCCEEecCCCCceEEEEEccCC------ce
Confidence 88 55 66888888 9999999999999888887 79999999999999999999999999999999999 56
Q ss_pred eeeecCCcCCEEEEEecCC-EEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEe--cC
Q 009993 357 VATWIPHTGPVNSLAFEFP-WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--GA 433 (520)
Q Consensus 357 ~~~~~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~ 433 (520)
+..+ +|...|.+++|+|+ +.+++..+..|+|||+.+............ .+ ........++++++ +|
T Consensus 227 lysl-~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~-------g~---s~~~~~~~clslaws~dG 295 (315)
T KOG0279|consen 227 LYSL-EAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGI-------GP---SSKAGDPICLSLAWSADG 295 (315)
T ss_pred eEec-cCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcccccc-------cc---ccccCCcEEEEEEEcCCC
Confidence 6555 67889999999994 666666777899999998644432221110 11 11222334444554 57
Q ss_pred CEEEEecCCCeEEEEeCC
Q 009993 434 DRIVCGGEEGIVRIWNFS 451 (520)
Q Consensus 434 ~~l~sg~~Dg~v~iwd~~ 451 (520)
..|++|-.|+.|++|.+.
T Consensus 296 ~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 296 QTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cEEEeeecCCcEEEEEee
Confidence 799999999999999875
No 10
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.1e-38 Score=276.29 Aligned_cols=291 Identities=21% Similarity=0.315 Sum_probs=247.7
Q ss_pred HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009993 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR 210 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd 210 (520)
++.+++.||.+.|.|+++.|..++++||+.|++++|||+.+|+...++.+|-..|..+. +...++++++.|+.|+.||
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 56889999999999999999999999999999999999999999999999988887665 7778999999999999999
Q ss_pred cccCcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eC
Q 009993 211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PH 285 (520)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~ 285 (520)
++.. +.+..+.||-..|.|++..+ +.|++|+.|.++++||+++...+..+. |..+|.++. +-
T Consensus 222 Le~n-------------kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~ 288 (460)
T KOG0285|consen 222 LEYN-------------KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT 288 (460)
T ss_pred chhh-------------hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecC
Confidence 9764 46777889999999999964 789999999999999999999999998 999999987 55
Q ss_pred CCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCc
Q 009993 286 DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT 364 (520)
Q Consensus 286 ~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 364 (520)
+..+++|+ |++|++||++.|+....+. .|...+.+++.+|....+++++.|. |+-|++..+ ..+..+.+|.
T Consensus 289 dpqvit~S~D~tvrlWDl~agkt~~tlt-~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g------~f~~nlsgh~ 360 (460)
T KOG0285|consen 289 DPQVITGSHDSTVRLWDLRAGKTMITLT-HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEG------EFLQNLSGHN 360 (460)
T ss_pred CCceEEecCCceEEEeeeccCceeEeee-cccceeeEEecCCchhhhhccCCcc-ceeccCCcc------chhhcccccc
Confidence 77888888 9999999999999998887 5999999999999999999998886 999999999 6777899999
Q ss_pred CCEEEEEec-CCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCC
Q 009993 365 GPVNSLAFE-FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEG 443 (520)
Q Consensus 365 ~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg 443 (520)
+-|++++.+ ..++++|+++|.+.+||.+++..... ...+..+-...........|++-.+.+|+||..|.
T Consensus 361 ~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~---------~~t~vqpGSl~sEagI~as~fDktg~rlit~eadK 431 (460)
T KOG0285|consen 361 AIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQR---------GQTIVQPGSLESEAGIFASCFDKTGSRLITGEADK 431 (460)
T ss_pred ceeeeeeeccCceEEEcCCceEEEEEecCcCccccc---------ccccccCCccccccceeEEeecccCceEEeccCCc
Confidence 999999995 47999999999999999998633221 11112222222222333344444556999999999
Q ss_pred eEEEEeCCch
Q 009993 444 IVRIWNFSQA 453 (520)
Q Consensus 444 ~v~iwd~~~~ 453 (520)
+|++|.-.+.
T Consensus 432 tIk~~keDe~ 441 (460)
T KOG0285|consen 432 TIKMYKEDEH 441 (460)
T ss_pred ceEEEecccc
Confidence 9999986644
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-38 Score=275.39 Aligned_cols=280 Identities=23% Similarity=0.347 Sum_probs=251.9
Q ss_pred HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009993 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR 210 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd 210 (520)
.+.+.+.||..+|+.+-|+|+-.++++++.|++|++||..+|+....+++|...+..++ ..|+++++++.|=.+++||
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD 178 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence 55788899999999999999999999999999999999999999999999999988877 6789999999999999999
Q ss_pred cccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eC
Q 009993 211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PH 285 (520)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~ 285 (520)
..+. ..+...+.+|...|.+++| .++++++++.|.+|+.|++.++.+++++. |..+|..+. .|
T Consensus 179 ~~~~------------~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~D 246 (406)
T KOG0295|consen 179 FDTF------------FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQD 246 (406)
T ss_pred HHHH------------HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCC
Confidence 8664 3456677899999999999 78999999999999999999999999998 888999888 67
Q ss_pred CCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCC---------------CCEEEEEeCCCeEEEEEcccCc
Q 009993 286 DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT---------------GDFLFTGGEDGAIHMYEIINDC 349 (520)
Q Consensus 286 ~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~---------------~~~l~tg~~dg~i~iwd~~~~~ 349 (520)
|.++++++ |.++++|-..++++...+. .|..+|.+++|.|. +.++++++.|++|++||+.++
T Consensus 247 Gti~As~s~dqtl~vW~~~t~~~k~~lR-~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg- 324 (406)
T KOG0295|consen 247 GTIIASCSNDQTLRVWVVATKQCKAELR-EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG- 324 (406)
T ss_pred eeEEEecCCCceEEEEEeccchhhhhhh-ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-
Confidence 88999999 9999999999998888887 69999999999773 258999999999999999999
Q ss_pred cccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeE
Q 009993 350 TEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLL 427 (520)
Q Consensus 350 ~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 427 (520)
.++.++.+|...|..++|+| +||+++.+|+++++||+++. .+...+..|..-|.
T Consensus 325 -----~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-------------------~cmk~~~ah~hfvt 380 (406)
T KOG0295|consen 325 -----MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL-------------------QCMKTLEAHEHFVT 380 (406)
T ss_pred -----eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc-------------------eeeeccCCCcceeE
Confidence 89999999999999999985 89999999999999999984 44455567777788
Q ss_pred EEEecCC--EEEEecCCCeEEEEeC
Q 009993 428 SVDIGAD--RIVCGGEEGIVRIWNF 450 (520)
Q Consensus 428 ~~~~~~~--~l~sg~~Dg~v~iwd~ 450 (520)
+++++.+ +++||+-|.++++|.-
T Consensus 381 ~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 381 SLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEecCCCCceEEeccccceeeeeec
Confidence 8887765 9999999999999974
No 12
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.8e-39 Score=288.99 Aligned_cols=245 Identities=22% Similarity=0.287 Sum_probs=226.3
Q ss_pred CCcccHH----HhhhhhccccccEEEEEEccC--CCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEE
Q 009993 126 SDDKSWK----ELIDVLYGHTEAVLTVFVLAS--AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLL 197 (520)
Q Consensus 126 ~~~~~W~----~~~~~l~~h~~~V~~l~~~~~--~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l 197 (520)
...++|+ ..+++|+||++.|.++.|+|. +..+|||+.||++++|++++..++..+.+|...|..+. |+|++|
T Consensus 197 G~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L 276 (459)
T KOG0272|consen 197 GLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFL 276 (459)
T ss_pred CceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCcee
Confidence 3448888 668899999999999999996 66899999999999999999999999999988876654 999999
Q ss_pred EEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-
Q 009993 198 VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR- 274 (520)
Q Consensus 198 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~- 274 (520)
+|++.|.+-++||+.++. ......||...|.+++| ||..++||+.|..-+|||+++++++..+.
T Consensus 277 ~TasfD~tWRlWD~~tk~-------------ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g 343 (459)
T KOG0272|consen 277 GTASFDSTWRLWDLETKS-------------ELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG 343 (459)
T ss_pred eecccccchhhcccccch-------------hhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecc
Confidence 999999999999998864 44556799999999999 89999999999999999999999999997
Q ss_pred eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecC-CCCEEEEEeCCCeEEEEEcccCcc
Q 009993 275 HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH-TGDFLFTGGEDGAIHMYEIINDCT 350 (520)
Q Consensus 275 ~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~tg~~dg~i~iwd~~~~~~ 350 (520)
|..+|.+++ |+|..+++|+ |++++|||++....+..+. +|..-|+.+.|+| .|.+|+|++.|++++||..++.
T Consensus 344 H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip-AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-- 420 (459)
T KOG0272|consen 344 HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP-AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW-- 420 (459)
T ss_pred cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc-cccchhhheEecccCCeEEEEcccCcceeeecCCCc--
Confidence 999999988 9999999999 9999999999999998887 7999999999999 7889999999999999999999
Q ss_pred ccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEe
Q 009993 351 EANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLID 390 (520)
Q Consensus 351 ~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd 390 (520)
.+++++.||.+.|.++++++ +++++++.|.++++|.
T Consensus 421 ----~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 421 ----SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ----ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 78999999999999999965 6899999999999995
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.9e-36 Score=271.19 Aligned_cols=310 Identities=21% Similarity=0.290 Sum_probs=257.3
Q ss_pred HhhhhhccccccEEEEEEccCCC-EEEEEeCCCeEEEEECCCC--cEEE--Ee----------CCCCceEEEEe--cCCC
Q 009993 133 ELIDVLYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDG--FSIA--SS----------KPLGCTIRAVA--ADKK 195 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~~~~~-~l~sgs~dg~v~vwd~~~~--~~~~--~~----------~~~~~~v~~~~--~~~~ 195 (520)
...+.+. |+.+|.+.+|+|-.. ++++|+.|-+.++|++... .... .+ ...+..|++++ .+|.
T Consensus 170 ~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~ 248 (524)
T KOG0273|consen 170 SKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT 248 (524)
T ss_pred cceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC
Confidence 3345566 999999999999765 8999999999999999741 1100 01 11223455555 6799
Q ss_pred EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEe
Q 009993 196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL 273 (520)
Q Consensus 196 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 273 (520)
.||+|+.||.+++|+.... ....+..|.++|.++.| .|++|++++.|+++.+||..++...+.+
T Consensus 249 ~LatG~~~G~~riw~~~G~--------------l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 249 LLATGSEDGEARIWNKDGN--------------LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred eEEEeecCcEEEEEecCch--------------hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee
Confidence 9999999999999997543 55677889999999999 6789999999999999999999999988
Q ss_pred e-eccCEEEEe-eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcc
Q 009993 274 R-HSDWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCT 350 (520)
Q Consensus 274 ~-~~~~v~~~~-~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~ 350 (520)
. |..+-..+. .+...+++++ |+.|+++.+....++.++. +|.++|.++.|+|.|.+|++++.|++++||+....
T Consensus 315 ~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~-GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-- 391 (524)
T KOG0273|consen 315 EFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFI-GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-- 391 (524)
T ss_pred eeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeee-cccCceEEEEECCCCceEEEecCCCeeEeeecCCC--
Confidence 8 666656666 5666777777 9999999999999999998 59999999999999999999999999999999888
Q ss_pred ccceeeeeeecCCcCCEEEEEecC-----------CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccc
Q 009993 351 EANVLLVATWIPHTGPVNSLAFEF-----------PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML 419 (520)
Q Consensus 351 ~~~~~~~~~~~~h~~~v~~l~~~~-----------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (520)
.....+.+|...|+.+.|+| ..+++++.|++|++||+..+ .+...+
T Consensus 392 ----~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-------------------v~i~~f 448 (524)
T KOG0273|consen 392 ----NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-------------------VPIHTL 448 (524)
T ss_pred ----cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-------------------ceeEee
Confidence 67888999999999999965 38999999999999999984 455567
Q ss_pred cCcceeeEEEEec--CCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccccc
Q 009993 420 HGFECNLLSVDIG--ADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVA 494 (520)
Q Consensus 420 ~~~~~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~ 494 (520)
..|..+|++++++ +.++|+|+.||.|.+|+..+++.++..... -.+..+.|+.+|.++..|..+
T Consensus 449 ~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-----------~~Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 449 MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-----------GGIFELCWNAAGDKLGACASD 514 (524)
T ss_pred ccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC-----------CeEEEEEEcCCCCEEEEEecC
Confidence 7899999999887 459999999999999999998776543222 225789999999988877543
No 14
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.6e-35 Score=250.65 Aligned_cols=282 Identities=17% Similarity=0.229 Sum_probs=242.7
Q ss_pred HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECC-CCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEE
Q 009993 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLE-DGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCW 209 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~-~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vw 209 (520)
..+..+.||++.|+.+.|+|+|.+|+||+.|..|.+|++. .-+....+++|...|..+. .+++.+++++.|.+|+.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 4466788999999999999999999999999999999964 4456677889999999887 899999999999999999
Q ss_pred EcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--e
Q 009993 210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--P 284 (520)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~ 284 (520)
|+++|. ......+|..-|+++.. ....+.+|+.||++++||+++...++++.....++++. .
T Consensus 118 D~~tG~-------------~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d 184 (338)
T KOG0265|consen 118 DAETGK-------------RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKD 184 (338)
T ss_pred ecccce-------------eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecc
Confidence 999874 67788899999999987 45678999999999999999999999998788888877 5
Q ss_pred CCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCC
Q 009993 285 HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH 363 (520)
Q Consensus 285 ~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h 363 (520)
.+..+.+|. |+.|++||++.+.....+. ||..+|+.+..+|+|.++.+-+.|.++++||++...+.. .++..+.+|
T Consensus 185 ~s~qv~sggIdn~ikvWd~r~~d~~~~ls-Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~--R~v~if~g~ 261 (338)
T KOG0265|consen 185 TSDQVISGGIDNDIKVWDLRKNDGLYTLS-GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQ--RCVKIFQGH 261 (338)
T ss_pred cccceeeccccCceeeeccccCcceEEee-cccCceeeEEeccCCCccccccccceEEEEEecccCCCC--ceEEEeecc
Confidence 677888888 9999999999999999887 799999999999999999999999999999998764332 346666665
Q ss_pred cC----CEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--E
Q 009993 364 TG----PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--R 435 (520)
Q Consensus 364 ~~----~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~ 435 (520)
.- ....++|+| ..+.+|+.|..+++||... ....-.+.||...|.+++|.+. .
T Consensus 262 ~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~-------------------r~~lyklpGh~gsvn~~~Fhp~e~i 322 (338)
T KOG0265|consen 262 IHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS-------------------RRILYKLPGHYGSVNEVDFHPTEPI 322 (338)
T ss_pred hhhhhhhcceeeccCCCCccccccccceEEEeeccc-------------------ccEEEEcCCcceeEEEeeecCCCcE
Confidence 32 335567776 6899999999999999876 3444557899999999998876 9
Q ss_pred EEEecCCCeEEEEe
Q 009993 436 IVCGGEEGIVRIWN 449 (520)
Q Consensus 436 l~sg~~Dg~v~iwd 449 (520)
|.+++.|.+|++=+
T Consensus 323 ils~~sdk~i~lge 336 (338)
T KOG0265|consen 323 ILSCSSDKTIYLGE 336 (338)
T ss_pred EEEeccCceeEeec
Confidence 99999999998743
No 15
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=275.14 Aligned_cols=371 Identities=17% Similarity=0.225 Sum_probs=283.6
Q ss_pred hhhhhhcCCCCCCCCCCCCCCCcccHH------------HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 009993 106 EFYCERWGLPIASAPLGAGFSDDKSWK------------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED 173 (520)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~W~------------~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~ 173 (520)
.+-|..|+ |++............+|. .+.+++.||-+.|+++.|+.|.++|++||.|-++++|+++.
T Consensus 98 ~v~~i~fS-Png~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~ 176 (893)
T KOG0291|consen 98 GVGAIKFS-PNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDG 176 (893)
T ss_pred ccceEEEC-CCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecc
Confidence 34566777 666666555556666676 23667889999999999999999999999999999999987
Q ss_pred CcE--EEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeec-------------c-CCccc-------c
Q 009993 174 GFS--IASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDI-------------S-GSEKQ-------N 228 (520)
Q Consensus 174 ~~~--~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-------------~-~~~~~-------~ 228 (520)
.+. ...+.+|..+|.+.- .+...+++.+.||.+.+|......+..... . +.+.. .
T Consensus 177 ~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~ 256 (893)
T KOG0291|consen 177 NKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKT 256 (893)
T ss_pred ccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEE
Confidence 665 556789999888754 778889999999999999876321111100 0 00000 0
Q ss_pred ceEEeccCCCCeEEEEEcC--CEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEcC--CeEEEEE
Q 009993 229 TQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTSG--SDVYIWD 301 (520)
Q Consensus 229 ~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~d--~~i~iwd 301 (520)
...-+......|++.+|+. +.|++|-..|...+|++....+++.+. ...+|..+. ..|.+++.|+. |.+.||+
T Consensus 257 ~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVwe 336 (893)
T KOG0291|consen 257 KKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWE 336 (893)
T ss_pred EeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEE
Confidence 0111222337788999944 678999999999999999999999998 557888887 45999999994 7999999
Q ss_pred CCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEec--CCEEEE
Q 009993 302 TNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE--FPWLVS 379 (520)
Q Consensus 302 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s 379 (520)
..+..-+.+.. +|...+++++++|||++++||++||+|+|||...+ .|..++..|++.|+.+.|. ++.+++
T Consensus 337 WqsEsYVlKQQ-gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg------fC~vTFteHts~Vt~v~f~~~g~~lls 409 (893)
T KOG0291|consen 337 WQSESYVLKQQ-GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG------FCFVTFTEHTSGVTAVQFTARGNVLLS 409 (893)
T ss_pred eeccceeeecc-ccccceeeEEECCCCcEEEeccCCCcEEEEeccCc------eEEEEeccCCCceEEEEEEecCCEEEE
Confidence 99988777776 79999999999999999999999999999999999 8999999999999999994 689999
Q ss_pred EeCCCcEEEEeCCcccccCCCCCCCceee--e-----------------------eecCCCcccccCcceeeEE--EEec
Q 009993 380 AAGDGKLSLIDVRKLLRSGRPTSGKRVSR--V-----------------------IEVEPPQRMLHGFECNLLS--VDIG 432 (520)
Q Consensus 380 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~--~-----------------------~~~~~~~~~~~~~~~~v~~--~~~~ 432 (520)
.+-||+|+.||+.............+.+- + ........++.||.++|.+ ++++
T Consensus 410 sSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~ 489 (893)
T KOG0291|consen 410 SSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD 489 (893)
T ss_pred eecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc
Confidence 99999999999986544333222221110 0 1223445578899999997 5555
Q ss_pred CCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccccc
Q 009993 433 ADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVA 494 (520)
Q Consensus 433 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~ 494 (520)
++.|++|++|.+||+||+-......+ .-......+.++|+|||+.++++.++
T Consensus 490 ~~~LaS~SWDkTVRiW~if~s~~~vE----------tl~i~sdvl~vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 490 GSLLASGSWDKTVRIWDIFSSSGTVE----------TLEIRSDVLAVSFRPDGKELAVATLD 541 (893)
T ss_pred cCeEEeccccceEEEEEeeccCceee----------eEeeccceeEEEEcCCCCeEEEEEec
Confidence 66999999999999999864321111 11223457899999999999998875
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.3e-36 Score=269.48 Aligned_cols=272 Identities=21% Similarity=0.311 Sum_probs=236.6
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccee
Q 009993 141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHL 218 (520)
Q Consensus 141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~ 218 (520)
-+.+|..+.|.|+|+.|++|+..|.+.+|+..+-.....++.|..+|.++. .++..+++|+.+|.|++|+..-.
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn---- 170 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN---- 170 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh----
Confidence 345899999999999999999999999999855444444578999998876 89999999999999999986432
Q ss_pred eeccCCccccceEEeccC-CCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEE
Q 009993 219 FDISGSEKQNTQFRLWEH-EGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVAST 292 (520)
Q Consensus 219 ~~~~~~~~~~~~~~~~~h-~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~ 292 (520)
.+..+..| ...|++++| +...++++|.||+|+|||....+....+. |.-.|.+++ |...+++++
T Consensus 171 ----------nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasg 240 (464)
T KOG0284|consen 171 ----------NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASG 240 (464)
T ss_pred ----------hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEc
Confidence 23334444 499999999 56789999999999999999888877777 888899998 788899999
Q ss_pred c-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEE
Q 009993 293 S-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLA 371 (520)
Q Consensus 293 ~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~ 371 (520)
+ |..|++||.+++.++.++. +|...|..+.|+|++++|++++.|..+++||+++. +.+.++.+|...|+++.
T Consensus 241 skDnlVKlWDprSg~cl~tlh-~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m------kEl~~~r~Hkkdv~~~~ 313 (464)
T KOG0284|consen 241 SKDNLVKLWDPRSGSCLATLH-GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM------KELFTYRGHKKDVTSLT 313 (464)
T ss_pred cCCceeEeecCCCcchhhhhh-hccceEEEEEEcCCCCeeEEccCCceEEEEehhHh------HHHHHhhcchhhheeec
Confidence 9 8999999999999999997 69999999999999999999999999999999977 77889999999999999
Q ss_pred ecC---CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC--CEEEEecCCCeEE
Q 009993 372 FEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGIVR 446 (520)
Q Consensus 372 ~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~v~ 446 (520)
|+| .+|.+|+.||.|..|.+... .+...+-.+|...|+++++++ ..|++|+.|.+++
T Consensus 314 WhP~~~~lftsgg~Dgsvvh~~v~~~------------------~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~r 375 (464)
T KOG0284|consen 314 WHPLNESLFTSGGSDGSVVHWVVGLE------------------EPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVR 375 (464)
T ss_pred cccccccceeeccCCCceEEEecccc------------------ccccCCCcccccceeeeeccccceeEeecCCCccee
Confidence 987 79999999999999999732 344455577888899888876 4999999999999
Q ss_pred EEeCC
Q 009993 447 IWNFS 451 (520)
Q Consensus 447 iwd~~ 451 (520)
+|.-.
T Consensus 376 fw~r~ 380 (464)
T KOG0284|consen 376 FWTRN 380 (464)
T ss_pred eeccC
Confidence 99754
No 17
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.6e-34 Score=241.16 Aligned_cols=283 Identities=21% Similarity=0.332 Sum_probs=232.2
Q ss_pred hhhhccccccEEEEEEccC-CCEEEEEeCCCeEEEEECCCC---cEEEEe-CCCCceEEEEe--cCCCEEEEEeCCCcEE
Q 009993 135 IDVLYGHTEAVLTVFVLAS-AKLLFTSGYDSIVRMWHLEDG---FSIASS-KPLGCTIRAVA--ADKKLLVAGGTDGFIH 207 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~-~~~l~sgs~dg~v~vwd~~~~---~~~~~~-~~~~~~v~~~~--~~~~~l~sg~~dg~i~ 207 (520)
++.++||++.|..++|+|- |..|||+|.|+.|++|+...+ .+...+ .+|...|++++ |.|++|++|+.|.++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 5678999999999999998 889999999999999999853 333333 36888887766 8999999999999999
Q ss_pred EEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCC---cEEEEee-eccCEEE
Q 009993 208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALL---KCLKVLR-HSDWVYG 281 (520)
Q Consensus 208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~---~~~~~~~-~~~~v~~ 281 (520)
||.-..+. ..+...+.||...|.|++| +|++|++++.|+.|-||.+..+ ++...++ |..-|..
T Consensus 87 Iw~k~~~e-----------fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~ 155 (312)
T KOG0645|consen 87 IWKKEDGE-----------FECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKH 155 (312)
T ss_pred EeecCCCc-----------eeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccE
Confidence 99865443 4578889999999999999 8899999999999999998744 5666666 8888887
Q ss_pred Ee--eCCCEEEEEc-CCeEEEEECC---CCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcccccee
Q 009993 282 LA--PHDTTVASTS-GSDVYIWDTN---SGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVL 355 (520)
Q Consensus 282 ~~--~~~~~l~~~~-d~~i~iwd~~---~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~ 355 (520)
+. |...+|++++ |++|++|+-. .-.+..++. +|...|.+++|++.|..|++++.|++++||..... .
T Consensus 156 V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~-g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~------~ 228 (312)
T KOG0645|consen 156 VIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD-GHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD------L 228 (312)
T ss_pred EEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEec-CccceEEEEEecCCCceEEEecCCcceEeeeeccC------c
Confidence 77 6669999999 9999999876 236778886 69999999999999999999999999999987644 1
Q ss_pred eeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC-
Q 009993 356 LVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD- 434 (520)
Q Consensus 356 ~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 434 (520)
-.-|...++.+.|....|++++.|+.|+++.-....... ........-..|...|.++.+++.
T Consensus 229 ----~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p------------~~~l~~~~~~aHe~dVNsV~w~p~~ 292 (312)
T KOG0645|consen 229 ----SGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEP------------SWNLLAKKEGAHEVDVNSVQWNPKV 292 (312)
T ss_pred ----chhcccceEeeeecccceEeccCCCEEEEEEecCCCCCc------------hHHHHHhhhcccccccceEEEcCCC
Confidence 124778999999998899999999999999876421100 001112234567888888888873
Q ss_pred --EEEEecCCCeEEEEeCC
Q 009993 435 --RIVCGGEEGIVRIWNFS 451 (520)
Q Consensus 435 --~l~sg~~Dg~v~iwd~~ 451 (520)
+|++||+||.|++|.+.
T Consensus 293 ~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 293 SNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCceeecCCCceEEEEEec
Confidence 99999999999999875
No 18
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.9e-35 Score=240.86 Aligned_cols=275 Identities=18% Similarity=0.246 Sum_probs=232.8
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV 212 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~ 212 (520)
.++|..|.++|.++.|+-+|+|.+|++.|.+|++|+...|.+++++.+|+..|.... .|+..+++|+.|..|.+||+.
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 567889999999999999999999999999999999999999999999999998876 889999999999999999999
Q ss_pred cCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCC--cEEEEee-eccCEEEEeeCCC
Q 009993 213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALL--KCLKVLR-HSDWVYGLAPHDT 287 (520)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~-~~~~v~~~~~~~~ 287 (520)
+|. ....+.+|.+.|+.+.| +...+++|+.|.++++||.++. ++++.+. ..+.|.++...+.
T Consensus 90 TGk-------------v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h 156 (307)
T KOG0316|consen 90 TGK-------------VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH 156 (307)
T ss_pred cCe-------------eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc
Confidence 984 67789999999999999 4578999999999999998754 6777776 7889999999999
Q ss_pred EEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCC
Q 009993 288 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP 366 (520)
Q Consensus 288 ~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 366 (520)
.+++|+ ||+++.||++.|+....+ ...+|++++|+++++..++++.|+++++.|-.++ +.+..+.+|...
T Consensus 157 eIvaGS~DGtvRtydiR~G~l~sDy---~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG------klL~sYkGhkn~ 227 (307)
T KOG0316|consen 157 EIVAGSVDGTVRTYDIRKGTLSSDY---FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG------KLLKSYKGHKNM 227 (307)
T ss_pred EEEeeccCCcEEEEEeecceeehhh---cCCcceeEEecCCCCEEEEeeccceeeecccchh------HHHHHhcccccc
Confidence 999999 999999999999887665 4568999999999999999999999999999999 788999999876
Q ss_pred EEEEEe----cCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcce-eeEEEEecCC--EEEEe
Q 009993 367 VNSLAF----EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC-NLLSVDIGAD--RIVCG 439 (520)
Q Consensus 367 v~~l~~----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~--~l~sg 439 (520)
-+.+.. +..++++|+.||.|++||+...... ..+..+.. .+.++++.+. .++++
T Consensus 228 eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~-------------------sk~~~~~~v~v~dl~~hp~~~~f~~A 288 (307)
T KOG0316|consen 228 EYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQI-------------------SKLSVVSTVIVTDLSCHPTMDDFITA 288 (307)
T ss_pred eeeeeeeecccceeEEeccCCceEEEEEeccceee-------------------eeeccCCceeEEeeecccCccceeEe
Confidence 554443 3469999999999999999874222 22233332 3667777665 55555
Q ss_pred cCCCeEEEEeCC
Q 009993 440 GEEGIVRIWNFS 451 (520)
Q Consensus 440 ~~Dg~v~iwd~~ 451 (520)
.. +.+.+|.-+
T Consensus 289 ~~-~~~~~~~~~ 299 (307)
T KOG0316|consen 289 TG-HGDLFWYQE 299 (307)
T ss_pred cC-Cceeceeeh
Confidence 54 446666543
No 19
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.8e-35 Score=276.08 Aligned_cols=316 Identities=21% Similarity=0.326 Sum_probs=231.0
Q ss_pred Hhhhhhcc-ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--c--CCCEEEEEeCCCcEE
Q 009993 133 ELIDVLYG-HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--A--DKKLLVAGGTDGFIH 207 (520)
Q Consensus 133 ~~~~~l~~-h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~--~~~~l~sg~~dg~i~ 207 (520)
++++.+++ |+++|..++|+|.+.++++|+.|+.|+|||+..+.+...+++|++.|.++. | +...|++|..|++++
T Consensus 95 k~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~ 174 (775)
T KOG0319|consen 95 KLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVR 174 (775)
T ss_pred hHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEE
Confidence 66777777 999999999999999999999999999999999999999999999998876 3 334689999999999
Q ss_pred EEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEEC---------------------
Q 009993 208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDR--------------------- 264 (520)
Q Consensus 208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~--------------------- 264 (520)
+||+.+... +...+..|.+.|+++++ ++..+++++.|..+.+||+
T Consensus 175 vwnl~~~~t------------cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l 242 (775)
T KOG0319|consen 175 VWNLNDKRT------------CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRL 242 (775)
T ss_pred EEEcccCch------------HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEe
Confidence 999986543 22233334444444444 3333333333333333332
Q ss_pred -------------------------CC-----------------------------------------------------
Q 009993 265 -------------------------AL----------------------------------------------------- 266 (520)
Q Consensus 265 -------------------------~~----------------------------------------------------- 266 (520)
++
T Consensus 243 ~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ 322 (775)
T KOG0319|consen 243 REELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGY 322 (775)
T ss_pred chhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCC
Confidence 11
Q ss_pred ---------------------------------CcEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEEC--------
Q 009993 267 ---------------------------------LKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDT-------- 302 (520)
Q Consensus 267 ---------------------------------~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~-------- 302 (520)
..+.-...|...|.+++ .+|-++++|+ |.++++|.+
T Consensus 323 ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~ 402 (775)
T KOG0319|consen 323 NDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSL 402 (775)
T ss_pred chhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhh
Confidence 00100000223333333 2333455555 555555544
Q ss_pred ---------------------------------------CCCee---eEEe-----ecccccceEEEEecCCCCEEEEEe
Q 009993 303 ---------------------------------------NSGCL---LTVV-----NGAHVGNTKSLARSHTGDFLFTGG 335 (520)
Q Consensus 303 ---------------------------------------~~~~~---~~~~-----~~~~~~~i~~l~~s~~~~~l~tg~ 335 (520)
...+. ...+ ...|...|++++++|+.++++|||
T Consensus 403 ~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S 482 (775)
T KOG0319|consen 403 CVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGS 482 (775)
T ss_pred hhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecc
Confidence 33100 0001 125888999999999999999999
Q ss_pred CCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecC
Q 009993 336 EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVE 413 (520)
Q Consensus 336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 413 (520)
.|.+.+||++... ....++.+|...|.++.|++ +.++|+|.|++|+||.+.+ .
T Consensus 483 qDktaKiW~le~~------~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-------------------f 537 (775)
T KOG0319|consen 483 QDKTAKIWDLEQL------RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-------------------F 537 (775)
T ss_pred cccceeeecccCc------eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc-------------------c
Confidence 9999999999977 78999999999999999987 5999999999999999998 5
Q ss_pred CCcccccCcceeeEEEEec--CCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCccccc
Q 009993 414 PPQRMLHGFECNLLSVDIG--ADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQC 491 (520)
Q Consensus 414 ~~~~~~~~~~~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 491 (520)
.+...+.||++.|+-..|- +..|++++.||-|++|++.++..+..+-. ++.++-+++.+|++..+.++
T Consensus 538 SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~----------H~DrvWaL~~~~~~~~~~tg 607 (775)
T KOG0319|consen 538 SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDA----------HNDRVWALSVSPLLDMFVTG 607 (775)
T ss_pred eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhh----------ccceeEEEeecCccceeEec
Confidence 6677889999999988884 55999999999999999999988776433 34556788888988877776
Q ss_pred cccc
Q 009993 492 SVAA 495 (520)
Q Consensus 492 s~~~ 495 (520)
+.++
T Consensus 608 g~Dg 611 (775)
T KOG0319|consen 608 GGDG 611 (775)
T ss_pred CCCe
Confidence 6443
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.4e-35 Score=247.81 Aligned_cols=277 Identities=17% Similarity=0.245 Sum_probs=240.3
Q ss_pred hHHHhhcCcchhhhhhhhhcCCCCCCCCCCCCCCCcccHHHh----hhhhccccccEEEEEEccCCCEEEEEeCCCeEEE
Q 009993 93 ILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKEL----IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRM 168 (520)
Q Consensus 93 ~~~~~~~~~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~----~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~v 168 (520)
.-+++++.|. .++++..|........+++.+....+|+.. .+.+.-....|..++|+|.|+++|+|+-|+...|
T Consensus 46 ~~rr~LkGH~--~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 46 RTRRTLKGHL--NKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred eeEEEecccc--cceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 3346777776 678999998444444455556666789843 5566677899999999999999999999999999
Q ss_pred EECCCC------cEEEEeCCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeE
Q 009993 169 WHLEDG------FSIASSKPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPIT 241 (520)
Q Consensus 169 wd~~~~------~~~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 241 (520)
|++.+. ...+.+.+|...+.++. .+...|+|++.|.+..+||++++. ....+.+|.+.|.
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~-------------~~~~f~GH~gDV~ 190 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQ-------------QTQVFHGHTGDVM 190 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccce-------------EEEEecCCcccEE
Confidence 999855 34566889999998887 678899999999999999999874 6678889999999
Q ss_pred EEEE---cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeec-
Q 009993 242 SLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG- 313 (520)
Q Consensus 242 ~l~~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~- 313 (520)
++.+ +++.+++|+-|++.++||++.+.+.++|. |...|+++. |+|.-+++|+ |++.++||++..+.+..+..
T Consensus 191 slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~ 270 (343)
T KOG0286|consen 191 SLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD 270 (343)
T ss_pred EEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC
Confidence 9999 66899999999999999999999999998 999999998 9999999999 89999999999998888862
Q ss_pred ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEe
Q 009993 314 AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLID 390 (520)
Q Consensus 314 ~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd 390 (520)
....+|++++|+..|++|++|..|.++.+||.-.+ ..+..+.+|...|+|+..+| --+++|+.|..++||.
T Consensus 271 ~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~------e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 271 SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG------ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cccCCceeEEEcccccEEEeeecCCceeEeecccc------ceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 23458999999999999999999999999999888 67888999999999999976 5899999999999994
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.6e-34 Score=259.44 Aligned_cols=269 Identities=20% Similarity=0.268 Sum_probs=233.6
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeee
Q 009993 143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFD 220 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 220 (520)
..|++++|+.+|.+||+|+.||.+++|+. +|..+.++..|..+|.++. ..|++|++++.||++.+||..++.
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~----- 309 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT----- 309 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce-----
Confidence 68999999999999999999999999995 5788889999999999988 678899999999999999997764
Q ss_pred ccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CC
Q 009993 221 ISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GS 295 (520)
Q Consensus 221 ~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~ 295 (520)
....+.-|..+-.++.| +...+++++.|+.|+++.+....++.++. |.+.|.++. |.+.+|++++ |+
T Consensus 310 --------~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~ 381 (524)
T KOG0273|consen 310 --------VKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDG 381 (524)
T ss_pred --------EEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCC
Confidence 34455568887788899 77889999999999999999888888887 999999999 5699999999 89
Q ss_pred eEEEEECCCCeeeEEeecccccceEEEEecCCC---------CEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCC
Q 009993 296 DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG---------DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP 366 (520)
Q Consensus 296 ~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~---------~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 366 (520)
+++||..........+. +|...|+.+.|+|.| ..+++++.|++|++||+..+ .++.++..|..+
T Consensus 382 TlkiWs~~~~~~~~~l~-~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g------v~i~~f~kH~~p 454 (524)
T KOG0273|consen 382 TLKIWSMGQSNSVHDLQ-AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG------VPIHTLMKHQEP 454 (524)
T ss_pred eeEeeecCCCcchhhhh-hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC------ceeEeeccCCCc
Confidence 99999999888888887 699999999999964 47999999999999999999 889999999999
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcc-eeeEEEEecCCEEEEecCCC
Q 009993 367 VNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE-CNLLSVDIGADRIVCGGEEG 443 (520)
Q Consensus 367 v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~l~sg~~Dg 443 (520)
|++++|+| .++++|+.||.|.+|+.++.. ..+...+.. ..-+++...+++|..+-.||
T Consensus 455 VysvafS~~g~ylAsGs~dg~V~iws~~~~~-------------------l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~ 515 (524)
T KOG0273|consen 455 VYSVAFSPNGRYLASGSLDGCVHIWSTKTGK-------------------LVKSYQGTGGIFELCWNAAGDKLGACASDG 515 (524)
T ss_pred eEEEEecCCCcEEEecCCCCeeEeccccchh-------------------eeEeecCCCeEEEEEEcCCCCEEEEEecCC
Confidence 99999985 799999999999999998842 222222222 23345555677999999999
Q ss_pred eEEEEeCC
Q 009993 444 IVRIWNFS 451 (520)
Q Consensus 444 ~v~iwd~~ 451 (520)
.+++-|++
T Consensus 516 ~vcvldlr 523 (524)
T KOG0273|consen 516 SVCVLDLR 523 (524)
T ss_pred CceEEEec
Confidence 99999875
No 22
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-34 Score=257.52 Aligned_cols=280 Identities=18% Similarity=0.226 Sum_probs=232.2
Q ss_pred HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcE---EEEeCCCCceEEEE--ecCCCEEEEEeCCCcEE
Q 009993 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS---IASSKPLGCTIRAV--AADKKLLVAGGTDGFIH 207 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~---~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~ 207 (520)
+..++|..|++.|+-+.|+++|++||||+.|.+..+|++..... ..++.+|..+|..+ +||.++|++++.|..+.
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 55788999999999999999999999999999999999865543 67888998888765 59999999999999999
Q ss_pred EEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee--eccCEEEEe
Q 009993 208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA 283 (520)
Q Consensus 208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~ 283 (520)
+||+.+|.... .--.+|...+.+.+| |+..+++|+.|+++..||+.... +...+ ....|.+++
T Consensus 295 lwDv~tgd~~~------------~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dla 361 (519)
T KOG0293|consen 295 LWDVDTGDLRH------------LYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLA 361 (519)
T ss_pred eccCCcchhhh------------hcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEE
Confidence 99999884211 111234578899999 88899999999999999986433 33332 334566666
Q ss_pred --eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeee
Q 009993 284 --PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW 360 (520)
Q Consensus 284 --~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~ 360 (520)
+||+++++.. |..|++++.++......+. ...+|++++.|.+++++++.-.+..+++||+... ..+..+
T Consensus 362 it~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis--e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~------~lv~kY 433 (519)
T KOG0293|consen 362 ITYDGKYVLLVTVDKKIRLYNREARVDRGLIS--EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN------KLVRKY 433 (519)
T ss_pred EcCCCcEEEEEecccceeeechhhhhhhcccc--ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh------hHHHHh
Confidence 8999888877 9999999998876665543 5678999999999999999999999999999977 778888
Q ss_pred cCCcCC--EEEEEec---CCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC-
Q 009993 361 IPHTGP--VNSLAFE---FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD- 434 (520)
Q Consensus 361 ~~h~~~--v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 434 (520)
.||... +..-+|. ..++++||.|+.|+||+..+ ..+...+.||...|.++++++.
T Consensus 434 ~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s-------------------gkll~~LsGHs~~vNcVswNP~~ 494 (519)
T KOG0293|consen 434 FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS-------------------GKLLAVLSGHSKTVNCVSWNPAD 494 (519)
T ss_pred hcccccceEEEeccCCCCcceEEecCCCceEEEEEccC-------------------CceeEeecCCcceeeEEecCCCC
Confidence 898764 3333453 37999999999999999988 5667788999999999999886
Q ss_pred --EEEEecCCCeEEEEeCCc
Q 009993 435 --RIVCGGEEGIVRIWNFSQ 452 (520)
Q Consensus 435 --~l~sg~~Dg~v~iwd~~~ 452 (520)
.+|+||+||+||||....
T Consensus 495 p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 495 PEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred HHHhhccCCCCeEEEecCCc
Confidence 999999999999998764
No 23
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=3.2e-34 Score=252.20 Aligned_cols=277 Identities=26% Similarity=0.366 Sum_probs=234.6
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe-----cCCCEEEEEeCCCcEEEEEcccC
Q 009993 140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-----ADKKLLVAGGTDGFIHCWRAVEV 214 (520)
Q Consensus 140 ~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~-----~~~~~l~sg~~dg~i~vwd~~~~ 214 (520)
-|.+.|.++... +++++||++||++++||. .|+.+..+.+|..++.++. +....+++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 588999998886 789999999999999996 5889999999999998665 33447999999999999998776
Q ss_pred cceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCC-------------------------C
Q 009993 215 LPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRAL-------------------------L 267 (520)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~-------------------------~ 267 (520)
.. .........||...|.++.. ++..+++||.|.++++|+..+ +
T Consensus 180 ~~---------~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r 250 (423)
T KOG0313|consen 180 EN---------KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR 250 (423)
T ss_pred hh---------hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence 42 12233344599999999998 789999999999999999321 1
Q ss_pred cEEEEee-eccCEEEEe-eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEE
Q 009993 268 KCLKVLR-HSDWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE 344 (520)
Q Consensus 268 ~~~~~~~-~~~~v~~~~-~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd 344 (520)
.++.++. |..+|.++. ++...+++++ |.+|+.||+.++.....+. ....++++.++|..++|++|+.|..|++||
T Consensus 251 ~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~--~~ksl~~i~~~~~~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 251 TPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLT--TNKSLNCISYSPLSKLLASGSSDRHIRLWD 328 (423)
T ss_pred CceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeee--cCcceeEeecccccceeeecCCCCceeecC
Confidence 2233343 888999988 6778888888 9999999999999998886 567899999999999999999999999999
Q ss_pred cccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccC
Q 009993 345 IINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG 421 (520)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (520)
.+++.. -....++.+|.+.|.++.|+| ..|++|+.|+++++||+++. ..+...+.+
T Consensus 329 PR~~~g---s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~------------------k~plydI~~ 387 (423)
T KOG0313|consen 329 PRTGDG---SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST------------------KAPLYDIAG 387 (423)
T ss_pred CCCCCC---ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC------------------CCcceeecc
Confidence 998832 246778999999999999987 69999999999999999985 345666889
Q ss_pred cceeeEEEEecCC-EEEEecCCCeEEEEeCC
Q 009993 422 FECNLLSVDIGAD-RIVCGGEEGIVRIWNFS 451 (520)
Q Consensus 422 ~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~ 451 (520)
|...|+++.|... .|++||.|.+|+|+.-.
T Consensus 388 h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 388 HNDKVLSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CCceEEEEeccCCceEEeccCcceEEEeccc
Confidence 9999999999877 99999999999998754
No 24
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.5e-34 Score=270.70 Aligned_cols=286 Identities=21% Similarity=0.282 Sum_probs=249.4
Q ss_pred HhhhhhccccccEEEEEEc-cCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEE
Q 009993 133 ELIDVLYGHTEAVLTVFVL-ASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCW 209 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~-~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vw 209 (520)
++.+.+-|..+.|..|+|- |+.++|+.++..+.+|++++.+..+. .+.+|...|.++. .+|.+|+||+.|.++++|
T Consensus 314 ~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilW 392 (775)
T KOG0319|consen 314 TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILW 392 (775)
T ss_pred EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEE
Confidence 4467788999999999986 67799999999999999999887776 7899999999998 677799999999999999
Q ss_pred EcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCcE---EEEe-------eec
Q 009993 210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKC---LKVL-------RHS 276 (520)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~~---~~~~-------~~~ 276 (520)
.++.+. ....+.....+|++.|.++++ ....++++|.|+++++|++...+. ...+ .|.
T Consensus 393 r~~~~~---------~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHd 463 (775)
T KOG0319|consen 393 RLNNNC---------SKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHD 463 (775)
T ss_pred EecCCc---------chhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhc
Confidence 984442 223455667799999999999 347899999999999999876221 1111 188
Q ss_pred cCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccc
Q 009993 277 DWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN 353 (520)
Q Consensus 277 ~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~ 353 (520)
..|++++ |++.++++|+ |.+.+||+++.......+. +|...|.++.|+|..+.++|+|.|++|+||.+.+.
T Consensus 464 KdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs-GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f----- 537 (775)
T KOG0319|consen 464 KDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS-GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF----- 537 (775)
T ss_pred ccccceEecCCCceEEecccccceeeecccCceEEEEee-CCccceEEEEeccccceeEeccCCceEEEEEeccc-----
Confidence 8999988 9999999999 9999999999999999887 79999999999999999999999999999999999
Q ss_pred eeeeeeecCCcCCEEEEEe--cCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEe
Q 009993 354 VLLVATWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI 431 (520)
Q Consensus 354 ~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 431 (520)
.++.++.||+..|..+.| ++..|++++.||-|++|++.+ ..+...+.+|...|++++-
T Consensus 538 -SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt-------------------~eC~~tlD~H~DrvWaL~~ 597 (775)
T KOG0319|consen 538 -SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT-------------------NECEMTLDAHNDRVWALSV 597 (775)
T ss_pred -eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccc-------------------hhhhhhhhhccceeEEEee
Confidence 899999999999999999 568999999999999999998 6777889999999999987
Q ss_pred cCC--EEEEecCCCeEEEEeCCchH
Q 009993 432 GAD--RIVCGGEEGIVRIWNFSQAF 454 (520)
Q Consensus 432 ~~~--~l~sg~~Dg~v~iwd~~~~~ 454 (520)
++. .++||+.||.|.+|.=.+..
T Consensus 598 ~~~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 598 SPLLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred cCccceeEecCCCeEEEEeecCcHH
Confidence 665 89999999999999654443
No 25
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.4e-33 Score=256.50 Aligned_cols=296 Identities=18% Similarity=0.264 Sum_probs=237.2
Q ss_pred HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC---CCCceEEEEe--cCCCEEEEEeCCCcEE
Q 009993 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK---PLGCTIRAVA--ADKKLLVAGGTDGFIH 207 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~---~~~~~v~~~~--~~~~~l~sg~~dg~i~ 207 (520)
++..+++.|..-|.|+.|+|||++++|++.||+|.+||-.+|+.+..+. +|...|.+++ ||+..+++++.|.+++
T Consensus 181 KFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~K 260 (603)
T KOG0318|consen 181 KFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIK 260 (603)
T ss_pred eeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEE
Confidence 3467788999999999999999999999999999999999999999987 8999999887 9999999999999999
Q ss_pred EEEcccCccee------------------------------eeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec
Q 009993 208 CWRAVEVLPHL------------------------------FDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW 255 (520)
Q Consensus 208 vwd~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~ 255 (520)
|||+.+..... .+.-..........+.||...|+++.. ++.+|++|+.
T Consensus 261 IWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgsy 340 (603)
T KOG0318|consen 261 IWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSY 340 (603)
T ss_pred EEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeecc
Confidence 99997764210 011111223366778899999999999 7799999999
Q ss_pred CCeEEEEECCCCcEEEEee--ec---------------------------------------------------------
Q 009993 256 DMTVRVWDRALLKCLKVLR--HS--------------------------------------------------------- 276 (520)
Q Consensus 256 dg~v~iwd~~~~~~~~~~~--~~--------------------------------------------------------- 276 (520)
||.|.-||..++..-+... |.
T Consensus 341 DG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~a 420 (603)
T KOG0318|consen 341 DGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTA 420 (603)
T ss_pred CceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEE
Confidence 9999999975432111000 00
Q ss_pred -------------------------cCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEE-eecccccceEEEEecCCCC
Q 009993 277 -------------------------DWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTV-VNGAHVGNTKSLARSHTGD 329 (520)
Q Consensus 277 -------------------------~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~-~~~~~~~~i~~l~~s~~~~ 329 (520)
....++.|++..+++|+ |+.|++|.+..+..... ....|.++|++++|+||+.
T Consensus 421 vv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~ 500 (603)
T KOG0318|consen 421 VVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGA 500 (603)
T ss_pred EEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCc
Confidence 01112236778888888 89999999987653322 2236999999999999999
Q ss_pred EEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCcee
Q 009993 330 FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVS 407 (520)
Q Consensus 330 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 407 (520)
+|++|...+.+.+||+.+.. .....+.-|++.|.+++|+| .++++|+-|-.|.||++..+.
T Consensus 501 yla~~Da~rkvv~yd~~s~~-----~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~------------ 563 (603)
T KOG0318|consen 501 YLAAGDASRKVVLYDVASRE-----VKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPA------------ 563 (603)
T ss_pred EEEEeccCCcEEEEEcccCc-----eecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChh------------
Confidence 99999999999999999884 23445556999999999988 599999999999999998762
Q ss_pred eeeecCCCcccccCcceeeEEEEecCC-EEEEecCCCeEEEEeCC
Q 009993 408 RVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFS 451 (520)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~ 451 (520)
........|...|..+.|-.+ .+++.|.|..|++|++.
T Consensus 564 ------~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 564 ------KHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ------hheEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence 224455678888999988554 99999999999999975
No 26
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6e-34 Score=236.86 Aligned_cols=249 Identities=21% Similarity=0.300 Sum_probs=212.5
Q ss_pred CCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc--EEEEeCCCCceEEEEe--cCCCE
Q 009993 125 FSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVA--ADKKL 196 (520)
Q Consensus 125 ~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~--~~~~~ 196 (520)
+...+.|. .+.++++...+.|..+.+.|+++.||+|+. ..||+||+.++. ++.++.+|...|.++. .+|+.
T Consensus 19 DhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrW 97 (311)
T KOG0315|consen 19 DHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRW 97 (311)
T ss_pred cceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeE
Confidence 45569998 567888888899999999999999999875 569999998775 6889999987777655 89999
Q ss_pred EEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee
Q 009993 197 LVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR 274 (520)
Q Consensus 197 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 274 (520)
+++|++||+++|||++.. ...+...|..+|+++.. +...|++|..+|.|++||+....+...+-
T Consensus 98 MyTgseDgt~kIWdlR~~--------------~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li 163 (311)
T KOG0315|consen 98 MYTGSEDGTVKIWDLRSL--------------SCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI 163 (311)
T ss_pred EEecCCCceEEEEeccCc--------------ccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC
Confidence 999999999999998763 33345578899999999 44679999999999999999887777665
Q ss_pred --eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCe------eeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEE
Q 009993 275 --HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGC------LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY 343 (520)
Q Consensus 275 --~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~------~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iw 343 (520)
....|.++. ++|.+++++. .|..++|++-+.+ ++.++. .|.+.+..+.+||++++|++++.|.+++||
T Consensus 164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~-ah~~~il~C~lSPd~k~lat~ssdktv~iw 242 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ-AHNGHILRCLLSPDVKYLATCSSDKTVKIW 242 (311)
T ss_pred CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhee-cccceEEEEEECCCCcEEEeecCCceEEEE
Confidence 445677766 9999999999 7999999987653 444554 699999999999999999999999999999
Q ss_pred EcccCccccceeeeeeecCCcCCEEEEEec--CCEEEEEeCCCcEEEEeCCcc
Q 009993 344 EIINDCTEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~ 394 (520)
+.++.- +....+.+|...+..++|+ +.||++|+.|+.+++||+..+
T Consensus 243 n~~~~~-----kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 243 NTDDFF-----KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG 290 (311)
T ss_pred ecCCce-----eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC
Confidence 998872 5667788999999999995 589999999999999999984
No 27
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.3e-34 Score=264.01 Aligned_cols=241 Identities=22% Similarity=0.321 Sum_probs=220.4
Q ss_pred hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009993 134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA 211 (520)
Q Consensus 134 ~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~ 211 (520)
+.+++..|++.|.++.|+|...+++++-.+|.|.|||.++...++++.....+|++.. ...+.+++|+.|..|+|++.
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 3566778999999999999999999999999999999999999999988888887655 78889999999999999999
Q ss_pred ccCcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCCeEEEEECCCC-cEEEEee-eccCEEEEe---e
Q 009993 212 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALL-KCLKVLR-HSDWVYGLA---P 284 (520)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~~~-~~~~~~~-~~~~v~~~~---~ 284 (520)
.+++ .+..+..|.+.|++++.++ .+++|+|.|-+|++||.+.. .+.+++. |...|++++ .
T Consensus 85 nt~e-------------kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPk 151 (794)
T KOG0276|consen 85 NTGE-------------KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPK 151 (794)
T ss_pred ccce-------------eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCC
Confidence 8863 7788999999999999966 68999999999999999865 6777777 999999998 4
Q ss_pred CCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCC--CEEEEEeCCCeEEEEEcccCccccceeeeeeec
Q 009993 285 HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG--DFLFTGGEDGAIHMYEIINDCTEANVLLVATWI 361 (520)
Q Consensus 285 ~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~--~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 361 (520)
|.+.+++++ |++|++|.+.+..+..++. +|...|++++|-+.| .+|++|++|.+|+|||..+. .+++++.
T Consensus 152 D~ntFaS~sLDrTVKVWslgs~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk------~CV~TLe 224 (794)
T KOG0276|consen 152 DPNTFASASLDRTVKVWSLGSPHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK------SCVQTLE 224 (794)
T ss_pred CccceeeeeccccEEEEEcCCCCCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecchH------HHHHHhh
Confidence 678999999 9999999999999999998 799999999998755 59999999999999999999 8999999
Q ss_pred CCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993 362 PHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 362 ~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~ 394 (520)
||...|..+.|+| ..+++|+.||+++||+..+.
T Consensus 225 GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 225 GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY 259 (794)
T ss_pred cccccceEEEecCCCcEEEEecCCccEEEecCcce
Confidence 9999999999998 69999999999999998875
No 28
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.1e-34 Score=273.15 Aligned_cols=275 Identities=21% Similarity=0.273 Sum_probs=227.9
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC-------------------------------cEEEEeCCCCceEE
Q 009993 140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-------------------------------FSIASSKPLGCTIR 188 (520)
Q Consensus 140 ~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~-------------------------------~~~~~~~~~~~~v~ 188 (520)
--...++|..|++|+.+||.|-.|..|++|.+... ....++.+|.++|.
T Consensus 376 nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVy 455 (707)
T KOG0263|consen 376 NTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVY 455 (707)
T ss_pred EcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCcee
Confidence 34568999999999999999999999999988631 12334678999998
Q ss_pred EEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEEC
Q 009993 189 AVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDR 264 (520)
Q Consensus 189 ~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~ 264 (520)
..+ |+.++|++++.|+++++|.+.+. .....+.||..+|.++.| .|-+++|+|.|++.++|..
T Consensus 456 g~sFsPd~rfLlScSED~svRLWsl~t~-------------s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 456 GCSFSPDRRFLLSCSEDSSVRLWSLDTW-------------SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred eeeecccccceeeccCCcceeeeecccc-------------eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 765 99999999999999999999774 477788899999999999 5578999999999999999
Q ss_pred CCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeE
Q 009993 265 ALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI 340 (520)
Q Consensus 265 ~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i 340 (520)
.....++.+. |-+.|.|+. |+..++++|+ |.+|++||..+|..++.|. ||.++|.+++|+|+|++|++|++||.|
T Consensus 523 d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-GH~~~V~al~~Sp~Gr~LaSg~ed~~I 601 (707)
T KOG0263|consen 523 DHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-GHKGPVTALAFSPCGRYLASGDEDGLI 601 (707)
T ss_pred ccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-CCCCceEEEEEcCCCceEeecccCCcE
Confidence 9988888887 888888877 9999999999 9999999999999999996 799999999999999999999999999
Q ss_pred EEEEcccCccccceeeeeeecCCcCCEEEEEec--CCEEEEEeCCCcEEEEeCCcccccCCCCCC-----CceeeeeecC
Q 009993 341 HMYEIINDCTEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVRKLLRSGRPTSG-----KRVSRVIEVE 413 (520)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~~~~~ 413 (520)
.+||+.++ ..+..+.+|++.|+++.|+ +..||+|+.|.+|++||+...........- ........-.
T Consensus 602 ~iWDl~~~------~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (707)
T KOG0263|consen 602 KIWDLANG------SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASS 675 (707)
T ss_pred EEEEcCCC------cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCc
Confidence 99999999 7899999999999999995 589999999999999999865433110000 0000000112
Q ss_pred CCcccccCcceeeEEEEecCC
Q 009993 414 PPQRMLHGFECNLLSVDIGAD 434 (520)
Q Consensus 414 ~~~~~~~~~~~~v~~~~~~~~ 434 (520)
.....+.....+|..+.|+..
T Consensus 676 ~llgs~~tK~tpv~~l~Ftrr 696 (707)
T KOG0263|consen 676 LLLGSFYTKNTPVVGLHFTRR 696 (707)
T ss_pred ceeeeeeecCceEEEEEEecc
Confidence 233445555667888888765
No 29
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.2e-32 Score=256.41 Aligned_cols=276 Identities=32% Similarity=0.499 Sum_probs=234.0
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV 212 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~ 212 (520)
++++++|.++|++++|+|++++|++++.||.|++|++.+++....+..|...+..+. ++++.+++++.||.|++||+.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 467889999999999999999999999999999999999888888888887775554 788899999999999999987
Q ss_pred cCcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCC
Q 009993 213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDT 287 (520)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~ 287 (520)
++ .....+..|...|.++.|.+ .++++++.|+.|++||+++++....+. |...+.++. +++.
T Consensus 82 ~~-------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 148 (289)
T cd00200 82 TG-------------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT 148 (289)
T ss_pred cc-------------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC
Confidence 64 24455668888999999943 677777779999999999888888877 788888887 6678
Q ss_pred EEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCC
Q 009993 288 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP 366 (520)
Q Consensus 288 ~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 366 (520)
++++++ ++.|++||+++++.+..+. .|...+.++.|+|+++.+++++.||.|++||++.+ ..+..+..|...
T Consensus 149 ~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~------~~~~~~~~~~~~ 221 (289)
T cd00200 149 FVASSSQDGTIKLWDLRTGKCVATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG------KCLGTLRGHENG 221 (289)
T ss_pred EEEEEcCCCcEEEEEccccccceeEe-cCccccceEEECCCcCEEEEecCCCcEEEEECCCC------ceecchhhcCCc
Confidence 999998 9999999999988888887 58889999999999999999999999999999887 567777788899
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC--CEEEEecCC
Q 009993 367 VNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEE 442 (520)
Q Consensus 367 v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~D 442 (520)
+.++.|++ .++++++.||.|++||+.+.. ....+.+|...+.++.+++ .+|++++.|
T Consensus 222 i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~-------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 282 (289)
T cd00200 222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGE-------------------CVQTLSGHTNSVTSLAWSPDGKRLASGSAD 282 (289)
T ss_pred eEEEEEcCCCcEEEEEcCCCcEEEEEcCCce-------------------eEEEccccCCcEEEEEECCCCCEEEEecCC
Confidence 99999987 577777779999999998631 2222335666676666665 699999999
Q ss_pred CeEEEEe
Q 009993 443 GIVRIWN 449 (520)
Q Consensus 443 g~v~iwd 449 (520)
|.|++|+
T Consensus 283 ~~i~iw~ 289 (289)
T cd00200 283 GTIRIWD 289 (289)
T ss_pred CeEEecC
Confidence 9999996
No 30
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-32 Score=262.06 Aligned_cols=333 Identities=17% Similarity=0.220 Sum_probs=268.2
Q ss_pred hccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCC-CcEEEEEcccC
Q 009993 138 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTD-GFIHCWRAVEV 214 (520)
Q Consensus 138 l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~d-g~i~vwd~~~~ 214 (520)
|......|+|.+|++..+.|++|-..|...++++..-..++.+.-...+|..++ ..|..|+.|+.. |.+-||++.+.
T Consensus 261 ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE 340 (893)
T KOG0291|consen 261 LNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE 340 (893)
T ss_pred ecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc
Confidence 344458999999999999999999999999999999999988876666666666 559999998875 89999998764
Q ss_pred cceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEE
Q 009993 215 LPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTV 289 (520)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l 289 (520)
.-+....+|...++++++ ||.++++|+.||.|++||..++-|..++. |...|+.+. ..++.+
T Consensus 341 -------------sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~l 407 (893)
T KOG0291|consen 341 -------------SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVL 407 (893)
T ss_pred -------------ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEE
Confidence 356677899999999999 77899999999999999999999999998 999999887 789999
Q ss_pred EEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCC-eEEEEEcccCccccceeeeeeecCCcCCE
Q 009993 290 ASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG-AIHMYEIINDCTEANVLLVATWIPHTGPV 367 (520)
Q Consensus 290 ~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg-~i~iwd~~~~~~~~~~~~~~~~~~h~~~v 367 (520)
++.+ ||+|+.||+...+..+++..+...+..|++..|.|..+++|+.|. .|.+|++.++ +.+-.+.||.+||
T Consensus 408 lssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG------qllDiLsGHEgPV 481 (893)
T KOG0291|consen 408 LSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG------QLLDILSGHEGPV 481 (893)
T ss_pred EEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC------eeeehhcCCCCcc
Confidence 9999 999999999999999999877777889999999999999999886 4999999999 7899999999999
Q ss_pred EEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeE
Q 009993 368 NSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIV 445 (520)
Q Consensus 368 ~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v 445 (520)
.+++|+| +.|++||.|.+|++||+-..... ....-..|.....++.|+|+.|+++..||.|
T Consensus 482 s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~-----------------vEtl~i~sdvl~vsfrPdG~elaVaTldgqI 544 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT-----------------VETLEIRSDVLAVSFRPDGKELAVATLDGQI 544 (893)
T ss_pred eeeEEccccCeEEeccccceEEEEEeeccCce-----------------eeeEeeccceeEEEEcCCCCeEEEEEecceE
Confidence 9999976 79999999999999999753100 0111122334445566678899999999999
Q ss_pred EEEeCCchHhHHHHhhh---hcccc-------cchhhhhccceeeeccCCCcccccccccccCCCCCCcceeeecccCC
Q 009993 446 RIWNFSQAFEIERRARA---LRGIR-------LENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGM 514 (520)
Q Consensus 446 ~iwd~~~~~~~~~~~~~---~~~~~-------~~~~~~~~~~~~~~s~~g~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 514 (520)
.+||...+.++.....- ..+-. ......+.-+.+++|+||..|.++. ..+..+||+-..++
T Consensus 545 tf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG--------~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 545 TFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGG--------ESNSICIYDVPEGV 615 (893)
T ss_pred EEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecC--------CcccEEEEECchhh
Confidence 99999988776322111 01100 0111123457889999999887765 33446888875443
No 31
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-33 Score=234.71 Aligned_cols=281 Identities=20% Similarity=0.219 Sum_probs=231.5
Q ss_pred EEEEeCCCCceEEEEe---cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEE
Q 009993 176 SIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRI 250 (520)
Q Consensus 176 ~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l 250 (520)
...++++|...|..+. .+...+++++.|.++.+|++.... .........+.||...|..+.. ++++.
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd--------~~~G~~~r~~~GHsH~v~dv~~s~dg~~a 78 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDD--------IKYGVPVRRLTGHSHFVSDVVLSSDGNFA 78 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCc--------cccCceeeeeeccceEecceEEccCCceE
Confidence 4557889999999887 456799999999999999986642 1223467889999999999988 89999
Q ss_pred EEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecC
Q 009993 251 YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH 326 (520)
Q Consensus 251 ~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~ 326 (520)
++++.|+++++||+.+++..+.+. |...|.+++ ++++.+++|+ |.+|.+||+............+...|.|+.|+|
T Consensus 79 lS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP 158 (315)
T KOG0279|consen 79 LSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSP 158 (315)
T ss_pred EeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcC
Confidence 999999999999999998888887 999999988 8999999999 999999999877766665544588999999999
Q ss_pred C--CCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCC
Q 009993 327 T--GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTS 402 (520)
Q Consensus 327 ~--~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 402 (520)
+ ..+|++++.|++|++||+++. +....+.+|++.++.+.++| ...++|+.||.+.+||++......
T Consensus 159 ~~~~p~Ivs~s~DktvKvWnl~~~------~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly---- 228 (315)
T KOG0279|consen 159 NESNPIIVSASWDKTVKVWNLRNC------QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY---- 228 (315)
T ss_pred CCCCcEEEEccCCceEEEEccCCc------chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeE----
Confidence 8 679999999999999999999 77888999999999999976 699999999999999999753221
Q ss_pred CCceeeeeecCCCcccccCcceeeEEEEecCC-EEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeee
Q 009993 403 GKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEM 481 (520)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (520)
..+|...|.++.|.++ +.+++..+..|+|||+++...+.++.....+. ......-.-..++|
T Consensus 229 ----------------sl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaw 291 (315)
T KOG0279|consen 229 ----------------SLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAW 291 (315)
T ss_pred ----------------eccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEE
Confidence 2345667888888887 55555666779999999999998876665554 11222233467899
Q ss_pred ccCCCccccc
Q 009993 482 SSKGGRTDQC 491 (520)
Q Consensus 482 s~~g~~~~~~ 491 (520)
++||..+.+.
T Consensus 292 s~dG~tLf~g 301 (315)
T KOG0279|consen 292 SADGQTLFAG 301 (315)
T ss_pred cCCCcEEEee
Confidence 9999887653
No 32
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=6.8e-35 Score=264.24 Aligned_cols=284 Identities=19% Similarity=0.295 Sum_probs=240.8
Q ss_pred cHHHhhhhhccccccEEEEEEcc-CCCEEEEEeCCCeEEEEECCC-CcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCc
Q 009993 130 SWKELIDVLYGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLED-GFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGF 205 (520)
Q Consensus 130 ~W~~~~~~l~~h~~~V~~l~~~~-~~~~l~sgs~dg~v~vwd~~~-~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~ 205 (520)
+-+.+++++.||+..|+++.|.| .+.+|++++.|+.|+||++-. +.+++++.+|..+|.++. .+|..+++++.|+.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence 35688999999999999999999 899999999999999999976 899999999999998765 78999999999999
Q ss_pred EEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cC-CEEEEEecCCeEEEEECCCCcEEEEee-eccCEEE
Q 009993 206 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DL-TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYG 281 (520)
Q Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~ 281 (520)
|++||+++|. +...+ .-...++|+.| ++ +.+++|+.|+.|+.||+++++.++.+. |-+.|..
T Consensus 282 lKlwDtETG~-------------~~~~f-~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~ 347 (503)
T KOG0282|consen 282 LKLWDTETGQ-------------VLSRF-HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILD 347 (503)
T ss_pred eeeeccccce-------------EEEEE-ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheee
Confidence 9999999984 22222 33456788888 33 889999999999999999999888886 8888988
Q ss_pred Ee--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeee
Q 009993 282 LA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA 358 (520)
Q Consensus 282 ~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~ 358 (520)
+. ++++.+++++ |++++||+.+.+-.+..+...+.....++..+|++++++.-+.|+.|.+|.+...- ......
T Consensus 348 i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~---r~nkkK 424 (503)
T KOG0282|consen 348 ITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF---RLNKKK 424 (503)
T ss_pred eEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc---ccCHhh
Confidence 88 8899999999 89999999999887776655556667889999999999999999999999976542 223455
Q ss_pred eecCCcC--CEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC
Q 009993 359 TWIPHTG--PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD 434 (520)
Q Consensus 359 ~~~~h~~--~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 434 (520)
.+.+|.. .-..+.|+| .+|++|+.||.+.+||.++ ......+..|...|..+.|.+.
T Consensus 425 ~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt-------------------~kl~~~lkah~~~ci~v~wHP~ 485 (503)
T KOG0282|consen 425 RFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT-------------------TKLVSKLKAHDQPCIGVDWHPV 485 (503)
T ss_pred hhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh-------------------hhhhhccccCCcceEEEEecCC
Confidence 6778864 445667766 7999999999999999998 4445567788888888888765
Q ss_pred ---EEEEecCCCeEEEEe
Q 009993 435 ---RIVCGGEEGIVRIWN 449 (520)
Q Consensus 435 ---~l~sg~~Dg~v~iwd 449 (520)
.+||+|.||.|++|+
T Consensus 486 e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 486 EPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CcceeEecccCceeEecC
Confidence 999999999999996
No 33
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.6e-33 Score=246.68 Aligned_cols=313 Identities=17% Similarity=0.190 Sum_probs=260.1
Q ss_pred HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009993 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR 210 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd 210 (520)
.-..+|.+|++.|.+++.+|+.++++||+.|..-.+|++.+|.....+.+|..+|+++. .+|.+||||..+|.|.||+
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 44778999999999999999999999999999999999999999999999999998866 8999999999999999999
Q ss_pred cccCcceeeeccCCccccceEEeccCCCCeEEEEEc--CCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEE--EeeC
Q 009993 211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYG--LAPH 285 (520)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~--~~~~ 285 (520)
..++. ....+...-..+.=+.|+ +..|+.|+.||.+.+|.+.+....+.+. |..++++ +.|+
T Consensus 135 ~stg~-------------~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pd 201 (399)
T KOG0296|consen 135 VSTGG-------------EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPD 201 (399)
T ss_pred cccCc-------------eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCC
Confidence 98874 233333344555566664 4789999999999999999977777776 8888776 4499
Q ss_pred CCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec---
Q 009993 286 DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI--- 361 (520)
Q Consensus 286 ~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~--- 361 (520)
|+.++++. ||+|++||+.+++++..+.........++.++..+..++.|+.++.+++-+..++ +.+....
T Consensus 202 GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg------KVv~~~n~~~ 275 (399)
T KOG0296|consen 202 GKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG------KVVNCNNGTV 275 (399)
T ss_pred CceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccc------eEEEecCCCC
Confidence 99999999 9999999999999999887656667889999999999999999999999888777 3444333
Q ss_pred -----CCcCCEEEEEecC-----CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEe
Q 009993 362 -----PHTGPVNSLAFEF-----PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI 431 (520)
Q Consensus 362 -----~h~~~v~~l~~~~-----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 431 (520)
.+...+.++.+.| .+.++|+-||+|.|||+.... .+....|...|..+.|
T Consensus 276 ~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~--------------------~R~~c~he~~V~~l~w 335 (399)
T KOG0296|consen 276 PELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST--------------------LRHICEHEDGVTKLKW 335 (399)
T ss_pred ccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch--------------------hheeccCCCceEEEEE
Confidence 3555566666644 688999999999999998632 2334557778999999
Q ss_pred cC-CEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccccc
Q 009993 432 GA-DRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVA 494 (520)
Q Consensus 432 ~~-~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~ 494 (520)
.+ .+|++++.||.|+.||.++|..+.. +..++..++.++.+|+++++.+.|.+
T Consensus 336 ~~t~~l~t~c~~g~v~~wDaRtG~l~~~----------y~GH~~~Il~f~ls~~~~~vvT~s~D 389 (399)
T KOG0296|consen 336 LNTDYLLTACANGKVRQWDARTGQLKFT----------YTGHQMGILDFALSPQKRLVVTVSDD 389 (399)
T ss_pred cCcchheeeccCceEEeeeccccceEEE----------EecCchheeEEEEcCCCcEEEEecCC
Confidence 88 5999999999999999999976544 34455667999999999999998854
No 34
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.5e-33 Score=244.63 Aligned_cols=305 Identities=19% Similarity=0.239 Sum_probs=246.3
Q ss_pred hhhhhhcCCCCCCCCCCCCCCC--cccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 009993 106 EFYCERWGLPIASAPLGAGFSD--DKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIAS 179 (520)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~--~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~ 179 (520)
.+|+.... |. .....+|..| ..+|+ +..-.+.||++.|+|+.|+.+|.+||||+.+|.|+||+..++.....
T Consensus 66 svFavsl~-P~-~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~ 143 (399)
T KOG0296|consen 66 SVFAVSLH-PN-NNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWK 143 (399)
T ss_pred ceEEEEeC-CC-CceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEE
Confidence 34666665 43 3333344433 47898 56778899999999999999999999999999999999999988888
Q ss_pred eC--CCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec
Q 009993 180 SK--PLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW 255 (520)
Q Consensus 180 ~~--~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~ 255 (520)
+. .....-.++.|.+..|++|+.||.+-+|.+... .....+.||+.++++=.| +|++++++..
T Consensus 144 ~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-------------~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 144 LDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-------------ALCKVMSGHNSPCTCGEFIPDGKRILTGYD 210 (399)
T ss_pred eecccCceEEEEecccccEEEeecCCCcEEEEECCCc-------------ceeeEecCCCCCcccccccCCCceEEEEec
Confidence 74 333344566799999999999999999998653 356678899999999998 8999999999
Q ss_pred CCeEEEEECCCCcEEEEee--e--ccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeec-------ccccceEEEE
Q 009993 256 DMTVRVWDRALLKCLKVLR--H--SDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNG-------AHVGNTKSLA 323 (520)
Q Consensus 256 dg~v~iwd~~~~~~~~~~~--~--~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~-------~~~~~i~~l~ 323 (520)
||+|++||..+++++..+. . ..+..++...+..++.|+ ++.+++.+..+|+.+..... .+...+.++.
T Consensus 211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhh
Confidence 9999999999999998887 2 233344447788888888 89999999888887766652 3444555555
Q ss_pred ecC---CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-CEEEEEeCCCcEEEEeCCcccccCC
Q 009993 324 RSH---TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGR 399 (520)
Q Consensus 324 ~s~---~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~ 399 (520)
+.| .-.+.|+|+.||+|.|||+... .++..-.|..+|+.+.|.+ .+|++++.||.|+.||.++
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~-------~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRt------ 357 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAAS-------TLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDART------ 357 (399)
T ss_pred hcccccccchhhcccccceEEEEecccc-------hhheeccCCCceEEEEEcCcchheeeccCceEEeeeccc------
Confidence 544 5568899999999999999887 2344457889999999987 8999999999999999999
Q ss_pred CCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EEEEecCCCeEEEEeCC
Q 009993 400 PTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFS 451 (520)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~ 451 (520)
..+...+.||...|+++...++ +++|+|.|++.+||++.
T Consensus 358 -------------G~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 358 -------------GQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred -------------cceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 4555668899999988886654 99999999999999875
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.6e-34 Score=249.38 Aligned_cols=249 Identities=25% Similarity=0.316 Sum_probs=224.6
Q ss_pred CCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCC-CcEEEEeCCCCceEEEEe--cCCC
Q 009993 123 AGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED-GFSIASSKPLGCTIRAVA--ADKK 195 (520)
Q Consensus 123 ~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~-~~~~~~~~~~~~~v~~~~--~~~~ 195 (520)
+.+...+.|+ ++.+.|+||++.|..++|+..|+++++++.|-.+++||.++ .++++...+|...|.++. |.|.
T Consensus 127 s~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd 206 (406)
T KOG0295|consen 127 SEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGD 206 (406)
T ss_pred cCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCC
Confidence 3466678898 78999999999999999999999999999999999999987 567777888877777665 9999
Q ss_pred EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEe
Q 009993 196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL 273 (520)
Q Consensus 196 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 273 (520)
++++++.|.+|+.|++.++. ++.++.+|...|..+.. ||..+++++.|.+|++|-+.++++...+
T Consensus 207 ~ilS~srD~tik~We~~tg~-------------cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~l 273 (406)
T KOG0295|consen 207 HILSCSRDNTIKAWECDTGY-------------CVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAEL 273 (406)
T ss_pred eeeecccccceeEEecccce-------------eEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhh
Confidence 99999999999999998874 77889999999999999 7889999999999999999999888888
Q ss_pred e-eccCEEEEe--e---------------CCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEE
Q 009993 274 R-HSDWVYGLA--P---------------HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTG 334 (520)
Q Consensus 274 ~-~~~~v~~~~--~---------------~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg 334 (520)
+ |..+|.+++ | .+.++.+++ |++|++||+.++.++.++. +|...|..++|+|.|++|+++
T Consensus 274 R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~-ghdnwVr~~af~p~Gkyi~Sc 352 (406)
T KOG0295|consen 274 REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV-GHDNWVRGVAFSPGGKYILSC 352 (406)
T ss_pred hccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe-cccceeeeeEEcCCCeEEEEE
Confidence 7 777777765 1 135888999 9999999999999999998 799999999999999999999
Q ss_pred eCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeC
Q 009993 335 GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDV 391 (520)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~ 391 (520)
.+|+++++||+++. .+..++..|..-|++++|+. .++++|+-|.++++|.-
T Consensus 353 aDDktlrvwdl~~~------~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 353 ADDKTLRVWDLKNL------QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ecCCcEEEEEeccc------eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999999999999 89999999999999999964 69999999999999974
No 36
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.2e-32 Score=271.59 Aligned_cols=284 Identities=24% Similarity=0.397 Sum_probs=238.2
Q ss_pred ccHHHhhhhhccc-cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc--EEEEeCCCCceEEEEe--cCCCEEEEEeCC
Q 009993 129 KSWKELIDVLYGH-TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVA--ADKKLLVAGGTD 203 (520)
Q Consensus 129 ~~W~~~~~~l~~h-~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~--~~~~~l~sg~~d 203 (520)
+.|.. ...+.+| ...|+++.|+++|+.+++++.|+.+++|+..++. ....+.+|...|..+. +++.++++|+.|
T Consensus 146 ~~~~~-~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D 224 (456)
T KOG0266|consen 146 RVFSL-EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDD 224 (456)
T ss_pred cccee-eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCC
Confidence 45555 6666665 8999999999999999999999999999998777 6777788888887665 999999999999
Q ss_pred CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEE
Q 009993 204 GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVY 280 (520)
Q Consensus 204 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~ 280 (520)
++|++||+... ......+.+|...|++++| +++.+++|+.|++|++||+++++++..+. |.+.|.
T Consensus 225 ~tiriwd~~~~------------~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 225 KTLRIWDLKDD------------GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred ceEEEeeccCC------------CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 99999998433 2467788899999999999 66899999999999999999999999998 899999
Q ss_pred EEe--eCCCEEEEEc-CCeEEEEECCCCe--eeEEeeccccc--ceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccc
Q 009993 281 GLA--PHDTTVASTS-GSDVYIWDTNSGC--LLTVVNGAHVG--NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN 353 (520)
Q Consensus 281 ~~~--~~~~~l~~~~-d~~i~iwd~~~~~--~~~~~~~~~~~--~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~ 353 (520)
+++ ++++++++++ |+.|++||+.++. +...+.. +.. ++++++|+|++.++++++.|+.+++||+...
T Consensus 293 ~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~----- 366 (456)
T KOG0266|consen 293 GLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSG-AENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG----- 366 (456)
T ss_pred EEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccC-CCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC-----
Confidence 887 8999999999 9999999999999 4566653 433 5999999999999999999999999999998
Q ss_pred eeeeeeecCCcCCEEEEEe-----cCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCc-ceeeE
Q 009993 354 VLLVATWIPHTGPVNSLAF-----EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGF-ECNLL 427 (520)
Q Consensus 354 ~~~~~~~~~h~~~v~~l~~-----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~ 427 (520)
..+..+.+|...++++.- .+.++++|+.|+.|.+||+.++ .....+.+| ...+.
T Consensus 367 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-------------------~~~~~l~~h~~~~~~ 426 (456)
T KOG0266|consen 367 -KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG-------------------GILQRLEGHSKAAVS 426 (456)
T ss_pred -cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc-------------------chhhhhcCCCCCcee
Confidence 778888888876544421 2479999999999999999973 333445566 55555
Q ss_pred EEEec--CCEEEEec--CCCeEEEEeCC
Q 009993 428 SVDIG--ADRIVCGG--EEGIVRIWNFS 451 (520)
Q Consensus 428 ~~~~~--~~~l~sg~--~Dg~v~iwd~~ 451 (520)
.+.++ ..++++++ .|+.+++|...
T Consensus 427 ~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 427 DLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ccccCCCcCeeeecCcCCCceEEEecCC
Confidence 55544 45888888 79999999765
No 37
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.1e-31 Score=284.66 Aligned_cols=291 Identities=13% Similarity=0.188 Sum_probs=223.3
Q ss_pred hhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC----c----EEEEeCCCCceEEEEe---cCCCEEEEEeCCCc
Q 009993 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG----F----SIASSKPLGCTIRAVA---ADKKLLVAGGTDGF 205 (520)
Q Consensus 137 ~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~----~----~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~ 205 (520)
.+.+|.+.|++++|+|+|++|++|+.|++|+||++.+. . ....+.. ...+.++. +.+.+|++++.||+
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeCCCe
Confidence 35569999999999999999999999999999997542 1 1222222 23444444 35789999999999
Q ss_pred EEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEE
Q 009993 206 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGL 282 (520)
Q Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~ 282 (520)
|++||+.++. ....+.+|.+.|++++| ++.+|++|+.||+|++||++++..+..+.+...+.++
T Consensus 557 v~lWd~~~~~-------------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v 623 (793)
T PLN00181 557 VQVWDVARSQ-------------LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCV 623 (793)
T ss_pred EEEEECCCCe-------------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEE
Confidence 9999987652 45567799999999999 3578999999999999999999998888866778887
Q ss_pred e---eCCCEEEEEc-CCeEEEEECCCCe-eeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeee
Q 009993 283 A---PHDTTVASTS-GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV 357 (520)
Q Consensus 283 ~---~~~~~l~~~~-d~~i~iwd~~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~ 357 (520)
. +++.++++|+ |+.|++||++++. .+..+. +|...|.++.|. ++.+|++++.|++|++||++.........++
T Consensus 624 ~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~-~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l 701 (793)
T PLN00181 624 QFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI-GHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPL 701 (793)
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec-CCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcce
Confidence 6 4688999999 9999999998875 345554 799999999997 6889999999999999999864322223567
Q ss_pred eeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCC-cccccCcceeeEEEEec--
Q 009993 358 ATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPP-QRMLHGFECNLLSVDIG-- 432 (520)
Q Consensus 358 ~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~-- 432 (520)
..+.+|...++++.|++ .+|++|+.|+.|++|+............. ..... ......+...|.++.|+
T Consensus 702 ~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~-------~~~~~~~~~~~~~~~~V~~v~ws~~ 774 (793)
T PLN00181 702 HSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFK-------TIDPVSGLEVDDASQFISSVCWRGQ 774 (793)
T ss_pred EEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecc-------cCCcccccccCCCCcEEEEEEEcCC
Confidence 78899999999999975 79999999999999998654211100000 00000 01123344556666655
Q ss_pred CCEEEEecCCCeEEEEeC
Q 009993 433 ADRIVCGGEEGIVRIWNF 450 (520)
Q Consensus 433 ~~~l~sg~~Dg~v~iwd~ 450 (520)
+..|++|+.||.|+||++
T Consensus 775 ~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 775 SSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCeEEEecCCCcEEEEec
Confidence 459999999999999986
No 38
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.6e-31 Score=242.27 Aligned_cols=351 Identities=19% Similarity=0.207 Sum_probs=268.6
Q ss_pred ccHH--HhhhhhccccccEEEEEEccCCC-EEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCC
Q 009993 129 KSWK--ELIDVLYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTD 203 (520)
Q Consensus 129 ~~W~--~~~~~l~~h~~~V~~l~~~~~~~-~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~d 203 (520)
..|+ .-+-.+.||...|.+++|-|... +++||+.|++|.+|+-..-+...++..|...|.++. |||.++++++.|
T Consensus 132 F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsD 211 (603)
T KOG0318|consen 132 FLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSD 211 (603)
T ss_pred EEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCC
Confidence 3355 34677899999999999998754 699999999999999877778888889998888765 999999999999
Q ss_pred CcEEEEEcccCcceeeeccCCccccceEEe---ccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeeccC
Q 009993 204 GFIHCWRAVEVLPHLFDISGSEKQNTQFRL---WEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDW 278 (520)
Q Consensus 204 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~ 278 (520)
|+|.+||=.+++ .+..+ .+|.+.|.+++| |+..+++++.|.+++|||+.+.++++++.....
T Consensus 212 gki~iyDGktge-------------~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~ 278 (603)
T KOG0318|consen 212 GKIYIYDGKTGE-------------KVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST 278 (603)
T ss_pred ccEEEEcCCCcc-------------EEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCc
Confidence 999999988874 22333 389999999999 779999999999999999999999999974333
Q ss_pred -----EEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcccc
Q 009993 279 -----VYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA 352 (520)
Q Consensus 279 -----v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~ 352 (520)
|-++-. +..|++.+ +|.|.++++..+..+..+. +|...|+++..+|++++|++|+.||.|.-|+...+..
T Consensus 279 v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~-GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~-- 354 (603)
T KOG0318|consen 279 VEDQQVGCLWQ-KDHLITVSLSGTINYLNPSDPSVLKVIS-GHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS-- 354 (603)
T ss_pred hhceEEEEEEe-CCeEEEEEcCcEEEEecccCCChhheec-ccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc--
Confidence 444446 55555555 9999999999999777776 7999999999999999999999999999999988831
Q ss_pred ceeeeeeecCCcCCEEEEEecC-CEEEEEeCCCcEEEEeCCcccccCCC--CCC---Cce-------eeee---------
Q 009993 353 NVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRP--TSG---KRV-------SRVI--------- 410 (520)
Q Consensus 353 ~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~---~~~-------~~~~--------- 410 (520)
....-.+|...|.+++.+. ..+++.+.|.++++.++......... ..+ ..+ ..+.
T Consensus 355 ---~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l 431 (603)
T KOG0318|consen 355 ---DRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLL 431 (603)
T ss_pred ---cccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEE
Confidence 1122267999999999976 89999999999999988543211110 000 000 0000
Q ss_pred -ecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCccc
Q 009993 411 -EVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTD 489 (520)
Q Consensus 411 -~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~ 489 (520)
........--+....+.+++++++.++.|+.||.|+||.+..+...++ .....++..++.+++||||..+|
T Consensus 432 ~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee--------~~~~~h~a~iT~vaySpd~~yla 503 (603)
T KOG0318|consen 432 QDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE--------AKLLEHRAAITDVAYSPDGAYLA 503 (603)
T ss_pred ecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccce--------eeeecccCCceEEEECCCCcEEE
Confidence 011111122345567788889999999999999999999987654332 12234455689999999999999
Q ss_pred ccccccccCCCCCCccee
Q 009993 490 QCSVAAKKNPMNGNRRSV 507 (520)
Q Consensus 490 ~~s~~~~~~~~~~~~~~~ 507 (520)
++-...+...-+..+|.+
T Consensus 504 ~~Da~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 504 AGDASRKVVLYDVASREV 521 (603)
T ss_pred EeccCCcEEEEEcccCce
Confidence 987665554444444443
No 39
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.7e-32 Score=239.41 Aligned_cols=276 Identities=18% Similarity=0.304 Sum_probs=234.6
Q ss_pred EEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEE
Q 009993 176 SIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIY 251 (520)
Q Consensus 176 ~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~ 251 (520)
..+.+.+|.+.|.|+. |.+..+++|+.|++|+|||+.++. ...++.||...|..+++.. .|++
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-------------LkltltGhi~~vr~vavS~rHpYlF 209 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-------------LKLTLTGHIETVRGVAVSKRHPYLF 209 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-------------EEEeecchhheeeeeeecccCceEE
Confidence 3455678999999887 888999999999999999999874 5667889999999999944 7999
Q ss_pred EEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCC
Q 009993 252 SGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT 327 (520)
Q Consensus 252 s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~ 327 (520)
+++.|+.|+.||++..+.++.+. |-..|.|++ |.-..+++|+ |.++++||+++...+..+. +|..+|.++.+.|-
T Consensus 210 s~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V~~~~~ 288 (460)
T KOG0285|consen 210 SAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASVMCQPT 288 (460)
T ss_pred EecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-CCCCcceeEEeecC
Confidence 99999999999999999888876 889999999 6788899998 9999999999999999997 79999999999998
Q ss_pred CCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCc
Q 009993 328 GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKR 405 (520)
Q Consensus 328 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 405 (520)
...+++|+.|++|++||++.+ +...++..|...|.+++.+| ..+++++.| .|+-|++..+
T Consensus 289 dpqvit~S~D~tvrlWDl~ag------kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g----------- 350 (460)
T KOG0285|consen 289 DPQVITGSHDSTVRLWDLRAG------KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEG----------- 350 (460)
T ss_pred CCceEEecCCceEEEeeeccC------ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCcc-----------
Confidence 889999999999999999999 78889999999999999998 467777777 5999999874
Q ss_pred eeeeeecCCCcccccCcceeeEEEEecCC-EEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccC
Q 009993 406 VSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSK 484 (520)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 484 (520)
.....+.+|...+.+++.+.+ ++++|++.|.+.+||.+++............-.++ .+..++..+|...
T Consensus 351 --------~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~--sEagI~as~fDkt 420 (460)
T KOG0285|consen 351 --------EFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLE--SEAGIFASCFDKT 420 (460)
T ss_pred --------chhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccc--cccceeEEeeccc
Confidence 223337889999999998766 99999999999999999987665543222111111 2345788899999
Q ss_pred CCccccccc
Q 009993 485 GGRTDQCSV 493 (520)
Q Consensus 485 g~~~~~~s~ 493 (520)
|.+|+++-.
T Consensus 421 g~rlit~ea 429 (460)
T KOG0285|consen 421 GSRLITGEA 429 (460)
T ss_pred CceEEeccC
Confidence 999998864
No 40
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.8e-32 Score=263.17 Aligned_cols=246 Identities=22% Similarity=0.462 Sum_probs=210.8
Q ss_pred ceEEEEecCCCEEEEEeCCCcEEEEEcccCcc----------ee--------eeccCCccccceEEeccCCCCeEEEEE-
Q 009993 185 CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLP----------HL--------FDISGSEKQNTQFRLWEHEGPITSLAL- 245 (520)
Q Consensus 185 ~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~----------~~--------~~~~~~~~~~~~~~~~~h~~~v~~l~~- 245 (520)
..+..+++++..||.|..|..|++|.+..... .+ .+............+.||.++|....|
T Consensus 381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFs 460 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFS 460 (707)
T ss_pred ceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeec
Confidence 34556678999999999999999999874210 00 111122233445568999999999999
Q ss_pred -cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceE
Q 009993 246 -DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTK 320 (520)
Q Consensus 246 -~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~ 320 (520)
+.++|+++|.|++||+|.+.+..++-.++ |..+|..+. |.|.++++++ |++.++|......+++.+. +|.+.|.
T Consensus 461 Pd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifa-ghlsDV~ 539 (707)
T KOG0263|consen 461 PDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFA-GHLSDVD 539 (707)
T ss_pred ccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhc-ccccccc
Confidence 66899999999999999999999998887 888898877 9999999999 9999999999999998887 7999999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccC
Q 009993 321 SLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSG 398 (520)
Q Consensus 321 ~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~ 398 (520)
|+.|+|+..++++||.|.++++||+.++ ..++.+.||.++|++++|+| .+|++|+.||.|.+||+.+
T Consensus 540 cv~FHPNs~Y~aTGSsD~tVRlWDv~~G------~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~----- 608 (707)
T KOG0263|consen 540 CVSFHPNSNYVATGSSDRTVRLWDVSTG------NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN----- 608 (707)
T ss_pred eEEECCcccccccCCCCceEEEEEcCCC------cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCC-----
Confidence 9999999999999999999999999999 78999999999999999987 7999999999999999998
Q ss_pred CCCCCCceeeeeecCCCcccccCcceeeEEEEec--CCEEEEecCCCeEEEEeCCchHhH
Q 009993 399 RPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVCGGEEGIVRIWNFSQAFEI 456 (520)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~~~~~~ 456 (520)
......+.+|+..+.+++|+ +..||+||.|.+|++||+......
T Consensus 609 --------------~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 609 --------------GSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred --------------CcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 45556678888888888775 559999999999999999865544
No 41
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.7e-32 Score=231.18 Aligned_cols=271 Identities=23% Similarity=0.378 Sum_probs=227.2
Q ss_pred HhhcCcchhhhhhhhhcCCCCCCCCCCCC-CCCcccHH-----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEE
Q 009993 96 RLASDHHAWKEFYCERWGLPIASAPLGAG-FSDDKSWK-----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMW 169 (520)
Q Consensus 96 ~~~~~~~lW~~~~~~~~~~~~~~~~~~~~-~~~~~~W~-----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vw 169 (520)
++...|. -++|+.+|. |+.+++..+| +...-+|+ +-..+++||+++|..+.|.+|++.|++++.|.+|+.|
T Consensus 41 m~l~gh~--geI~~~~F~-P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 41 MLLPGHK--GEIYTIKFH-PDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred hhcCCCc--ceEEEEEEC-CCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 4444555 467899998 6666655544 44457898 4477889999999999999999999999999999999
Q ss_pred ECCCCcEEEEeCCCCceEEEEec---CCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-
Q 009993 170 HLEDGFSIASSKPLGCTIRAVAA---DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL- 245 (520)
Q Consensus 170 d~~~~~~~~~~~~~~~~v~~~~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~- 245 (520)
|+++|+.++.+++|..-+.++.| ...++.+|+.||++++||+++.. ........-.++++.|
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~--------------~~~t~~~kyqltAv~f~ 183 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE--------------AIKTFENKYQLTAVGFK 183 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc--------------hhhccccceeEEEEEec
Confidence 99999999999999999888874 34578899999999999997542 1222334567899999
Q ss_pred -cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCC----eeeEEeecccc
Q 009993 246 -DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSG----CLLTVVNGAHV 316 (520)
Q Consensus 246 -~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~----~~~~~~~~~~~ 316 (520)
.+..+++|+-|+.|++||++......++. |.++|+.+. ++|.++.+-+ |.++++||++.. +++..+. +|.
T Consensus 184 d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~-g~~ 262 (338)
T KOG0265|consen 184 DTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQ-GHI 262 (338)
T ss_pred ccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEee-cch
Confidence 66889999999999999999999999998 999999988 8999999999 999999999753 3455554 332
Q ss_pred ----cceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEe
Q 009993 317 ----GNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLID 390 (520)
Q Consensus 317 ----~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd 390 (520)
.....++|+|++..+.+|+.|..+++||.... ..+..+.||.+.|++++|+| ..|.+++.|.+|++=+
T Consensus 263 hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r------~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 263 HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR------RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred hhhhhhcceeeccCCCCccccccccceEEEeecccc------cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 24567789999999999999999999999887 78999999999999999998 6999999999998743
No 42
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=6.3e-32 Score=265.24 Aligned_cols=250 Identities=28% Similarity=0.425 Sum_probs=225.6
Q ss_pred CCcccHH----Hhhhh-hccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEE
Q 009993 126 SDDKSWK----ELIDV-LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAG 200 (520)
Q Consensus 126 ~~~~~W~----~~~~~-l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg 200 (520)
...+.|+ ..+.+ |.||.+.|.++++..-+.+|++|+.|.+++|||..+|.+...+.+|...+.++...+.++++|
T Consensus 228 ~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sg 307 (537)
T KOG0274|consen 228 STLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSG 307 (537)
T ss_pred ceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeec
Confidence 3346787 33445 999999999999987789999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee-eccCE
Q 009993 201 GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWV 279 (520)
Q Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v 279 (520)
+.|.+|++|++.++ .....+.+|.++|.++..+++++++|+.|++|++||..++++++++. |..+|
T Consensus 308 s~D~tVkVW~v~n~-------------~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V 374 (537)
T KOG0274|consen 308 SRDNTVKVWDVTNG-------------ACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRV 374 (537)
T ss_pred cCCceEEEEeccCc-------------ceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceE
Confidence 99999999999865 35666777999999999999999999999999999999999999998 99999
Q ss_pred EEEeeCC-CEEEEEc-CCeEEEEECCCC-eeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceee
Q 009993 280 YGLAPHD-TTVASTS-GSDVYIWDTNSG-CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL 356 (520)
Q Consensus 280 ~~~~~~~-~~l~~~~-d~~i~iwd~~~~-~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~ 356 (520)
.++..++ ..+++|+ |++|++||+++. +++..+. +|..-+..+.+ .+++|++++.|++|++||..++ .+
T Consensus 375 ~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~-~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~------~~ 445 (537)
T KOG0274|consen 375 YSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQ-GHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEG------EC 445 (537)
T ss_pred EEEEecCcceEEeeeeccceEeecCCchhhhhhhhc-CCccccccccc--ccceeEeccccccEEEeecccC------ce
Confidence 9999888 9999999 999999999999 8888887 68888866665 6789999999999999999999 78
Q ss_pred eeeecC-CcCCEEEEEecCCEEEEEeCCCcEEEEeCCccccc
Q 009993 357 VATWIP-HTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRS 397 (520)
Q Consensus 357 ~~~~~~-h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~ 397 (520)
+.++.+ |.+.|.++++....+++++.||++++||++++...
T Consensus 446 ~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 446 LRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred eeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchh
Confidence 888888 78899999998789999999999999999986433
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.1e-32 Score=260.29 Aligned_cols=243 Identities=22% Similarity=0.322 Sum_probs=216.2
Q ss_pred hhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEccc
Q 009993 136 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVE 213 (520)
Q Consensus 136 ~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~ 213 (520)
..++..+..|..++|+|...+++++-..|.|++||..-+.++..|..|.++|..+. |.+.++++|+.|-.|+||+..+
T Consensus 3 tkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred chhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence 34667788999999999999999999999999999999999999999999998766 8999999999999999999866
Q ss_pred CcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCE
Q 009993 214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTT 288 (520)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~ 288 (520)
. .+.+++.||-+.|+.+.|+. .+++|+|.|.+|+||+..+++++..+. |...|+|.. |...+
T Consensus 83 r-------------rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDl 149 (1202)
T KOG0292|consen 83 R-------------RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDL 149 (1202)
T ss_pred c-------------eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccce
Confidence 4 57889999999999999954 679999999999999999999999998 999999988 77889
Q ss_pred EEEEc-CCeEEEEECCCCe----------------------------eeEEeecccccceEEEEecCCCCEEEEEeCCCe
Q 009993 289 VASTS-GSDVYIWDTNSGC----------------------------LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA 339 (520)
Q Consensus 289 l~~~~-d~~i~iwd~~~~~----------------------------~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~ 339 (520)
+++++ |.+|++||+..-+ .++.+..||...|+-++|+|.-.++++|++|..
T Consensus 150 IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq 229 (1202)
T KOG0292|consen 150 IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ 229 (1202)
T ss_pred EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce
Confidence 99999 9999999985311 123333589999999999999999999999999
Q ss_pred EEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCccc
Q 009993 340 IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLL 395 (520)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~ 395 (520)
|++|.+..... -.+-+..+|.+.|.++-|+| +.+++.|.|++|+|||+....
T Consensus 230 VKlWrmnetKa----WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 230 VKLWRMNETKA----WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred eeEEEeccccc----eeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc
Confidence 99999876632 45777889999999999999 799999999999999998743
No 44
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.4e-33 Score=247.88 Aligned_cols=265 Identities=20% Similarity=0.284 Sum_probs=223.0
Q ss_pred hhhhcCCCC-CCCCCCCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCC
Q 009993 108 YCERWGLPI-ASAPLGAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP 182 (520)
Q Consensus 108 ~~~~~~~~~-~~~~~~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~ 182 (520)
+..+|. |. .++..++......+|+ ..-..++.|..+|.++.|+++|.+++||+.+|.|++|+..- ..++.++.
T Consensus 100 ~~v~Wt-PeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~a 177 (464)
T KOG0284|consen 100 NVVRWT-PEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQA 177 (464)
T ss_pred eeEEEc-CCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhH
Confidence 445676 45 4556666677778999 44566789999999999999999999999999999999753 44444554
Q ss_pred C-CceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCC
Q 009993 183 L-GCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDM 257 (520)
Q Consensus 183 ~-~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg 257 (520)
| ...|++++ |+...+++++.||+|+|||.... .....+.+|.-.|.+++|++ ..+++||.|.
T Consensus 178 hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~-------------kee~vL~GHgwdVksvdWHP~kgLiasgskDn 244 (464)
T KOG0284|consen 178 HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP-------------KEERVLRGHGWDVKSVDWHPTKGLIASGSKDN 244 (464)
T ss_pred hhhhhhheeccCCCCceeEEecCCCeEEEEeccCC-------------chhheeccCCCCcceeccCCccceeEEccCCc
Confidence 4 46776655 88999999999999999998654 24556789999999999955 7899999999
Q ss_pred eEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecC-CCCEEE
Q 009993 258 TVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH-TGDFLF 332 (520)
Q Consensus 258 ~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~ 332 (520)
.|++||.++++|+.++. |...|..+. +++++|++++ |..++++|+++.+.+..+. +|...++++.|+| ...+|.
T Consensus 245 lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r-~Hkkdv~~~~WhP~~~~lft 323 (464)
T KOG0284|consen 245 LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR-GHKKDVTSLTWHPLNESLFT 323 (464)
T ss_pred eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh-cchhhheeecccccccccee
Confidence 99999999999999987 999999988 8899999999 9999999999888888887 7999999999999 567888
Q ss_pred EEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993 333 TGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 333 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 393 (520)
+|+.||.|..|.+.... .....-.+|...|++++|+| ..|++|+.|.++++|.-..
T Consensus 324 sgg~Dgsvvh~~v~~~~-----p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 324 SGGSDGSVVHWVVGLEE-----PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred eccCCCceEEEeccccc-----cccCCCcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence 99999999999998552 12222347999999999998 6899999999999998654
No 45
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=6.2e-33 Score=251.54 Aligned_cols=270 Identities=21% Similarity=0.304 Sum_probs=225.0
Q ss_pred hcCcchhhhhhhhhcCCCCCCCCCCCCCC--CcccHH-----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEE
Q 009993 98 ASDHHAWKEFYCERWGLPIASAPLGAGFS--DDKSWK-----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWH 170 (520)
Q Consensus 98 ~~~~~lW~~~~~~~~~~~~~~~~~~~~~~--~~~~W~-----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd 170 (520)
..+|. +.+.+.+|- |....++.++.. ..++|+ .+++++.||..+|..++|+++|..++|+|.|+.|++||
T Consensus 210 ~~gH~--kgvsai~~f-p~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD 286 (503)
T KOG0282|consen 210 LSGHT--KGVSAIQWF-PKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD 286 (503)
T ss_pred ccCCc--cccchhhhc-cceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeec
Confidence 34555 556777775 544444444444 458887 78999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeC-CCCceEEEEecCC-CEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--c
Q 009993 171 LEDGFSIASSK-PLGCTIRAVAADK-KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D 246 (520)
Q Consensus 171 ~~~~~~~~~~~-~~~~~v~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~ 246 (520)
+++|+++..+. ++...+..+.|++ +.+++|+.|+.|+.||+++++ .+..+..|-+.|..+.| +
T Consensus 287 tETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-------------vvqeYd~hLg~i~~i~F~~~ 353 (503)
T KOG0282|consen 287 TETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-------------VVQEYDRHLGAILDITFVDE 353 (503)
T ss_pred cccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-------------HHHHHHhhhhheeeeEEccC
Confidence 99999998886 4455566667887 899999999999999998873 55667789999999999 8
Q ss_pred CCEEEEEecCCeEEEEECCCCcEEEEee----eccCEEEEeeCCCEEEEEc-CCeEEEEECCCCe---eeEEeecccc--
Q 009993 247 LTRIYSGSWDMTVRVWDRALLKCLKVLR----HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGC---LLTVVNGAHV-- 316 (520)
Q Consensus 247 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~---~~~~~~~~~~-- 316 (520)
+.++++.+.|++++||+.+.+..++.+. |.-+...+.|++.++++-+ |+.|.+|.+...- ....+. +|.
T Consensus 354 g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~fe-Gh~va 432 (503)
T KOG0282|consen 354 GRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFE-GHSVA 432 (503)
T ss_pred CceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhc-ceecc
Confidence 8999999999999999999887776654 6666666779999999988 9999999875432 222333 563
Q ss_pred cceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEe
Q 009993 317 GNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLID 390 (520)
Q Consensus 317 ~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd 390 (520)
+.-..+.|||||.+|++|+.||.+.+||.++. +.+..+..|.+++..+.|+| ..+++++.||.|++||
T Consensus 433 Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~------kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 433 GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT------KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CceeeEEEcCCCCeEEeecCCccEEEeechhh------hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 45567889999999999999999999999998 78999999999999999987 6999999999999996
No 46
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.2e-31 Score=249.82 Aligned_cols=358 Identities=18% Similarity=0.310 Sum_probs=282.7
Q ss_pred hhhhhhhcCCCCCCCCCCCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 009993 105 KEFYCERWGLPIASAPLGAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS 180 (520)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~ 180 (520)
+++.+.+|.....++.+++.+.+.-.|+ .-.-.|+||++.|+..-|..+.+++++.|.|+.|++||+++..+..+.
T Consensus 108 ~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Th 187 (888)
T KOG0306|consen 108 AAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETH 187 (888)
T ss_pred cceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEE
Confidence 4555666664445555666677778899 336678999999999999988899999999999999999999999999
Q ss_pred CCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCc------------------------c--------------------
Q 009993 181 KPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVL------------------------P-------------------- 216 (520)
Q Consensus 181 ~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~------------------------~-------------------- 216 (520)
..|...+.++..+++.+++++.|+.+++|++.... .
T Consensus 188 vd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~ 267 (888)
T KOG0306|consen 188 VDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKV 267 (888)
T ss_pred ecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhh
Confidence 99999999999888999999999999999881100 0
Q ss_pred -------------------------------------------------------------------------------e
Q 009993 217 -------------------------------------------------------------------------------H 217 (520)
Q Consensus 217 -------------------------------------------------------------------------------~ 217 (520)
+
T Consensus 268 ~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~ 347 (888)
T KOG0306|consen 268 IELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVE 347 (888)
T ss_pred hhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceE
Confidence 0
Q ss_pred eeeccCCc------cccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEE--EeeCCCE
Q 009993 218 LFDISGSE------KQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYG--LAPHDTT 288 (520)
Q Consensus 218 ~~~~~~~~------~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~--~~~~~~~ 288 (520)
.+.+..+. .......+.+|...|.++++ +.+.++..+..+.+++|+..+.++++++... .+.+ +.|.+++
T Consensus 348 ~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~ 426 (888)
T KOG0306|consen 348 WYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRY 426 (888)
T ss_pred EEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc-cEEEEEecCCCce
Confidence 00000000 00112456689999999999 3344444444679999999999999999866 3433 3399999
Q ss_pred EEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcc-----------------
Q 009993 289 VASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCT----------------- 350 (520)
Q Consensus 289 l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~----------------- 350 (520)
++.|. .|.+.+||+.+...+.++. +|.+.|++++.+||+..+++|+.|.+|++||..-...
T Consensus 427 Iv~G~k~Gel~vfdlaS~~l~Eti~-AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL 505 (888)
T KOG0306|consen 427 IVLGTKNGELQVFDLASASLVETIR-AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL 505 (888)
T ss_pred EEEeccCCceEEEEeehhhhhhhhh-ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE
Confidence 99999 8999999999999888887 7999999999999999999999999999999742111
Q ss_pred -------------------------------ccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCccccc
Q 009993 351 -------------------------------EANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRS 397 (520)
Q Consensus 351 -------------------------------~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~ 397 (520)
....+....+.||.-||.|+..+| ..++|||.|.+|+||-+.=
T Consensus 506 el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdF---- 581 (888)
T KOG0306|consen 506 ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDF---- 581 (888)
T ss_pred eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEecccc----
Confidence 001233445678999999999866 7999999999999998865
Q ss_pred CCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhc
Q 009993 398 GRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRR 475 (520)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (520)
..+.+.+.+|..+|+++.|-++ .+.|+|.||.|+-||-..=..+.. ...+..+
T Consensus 582 ---------------GDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~----------L~~H~~e 636 (888)
T KOG0306|consen 582 ---------------GDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQK----------LDGHHSE 636 (888)
T ss_pred ---------------chhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhhee----------eccchhe
Confidence 5677788999999999998887 899999999999999876554443 3344555
Q ss_pred cceeeeccCCCccccccc
Q 009993 476 KLQTEMSSKGGRTDQCSV 493 (520)
Q Consensus 476 ~~~~~~s~~g~~~~~~s~ 493 (520)
+...+++|+|+...++|-
T Consensus 637 v~cLav~~~G~~vvs~sh 654 (888)
T KOG0306|consen 637 VWCLAVSPNGSFVVSSSH 654 (888)
T ss_pred eeeeEEcCCCCeEEeccC
Confidence 789999999999999883
No 47
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.6e-31 Score=251.11 Aligned_cols=278 Identities=18% Similarity=0.260 Sum_probs=237.3
Q ss_pred hhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCc
Q 009993 136 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVL 215 (520)
Q Consensus 136 ~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 215 (520)
-++.||...|.+++++.+...++||+ .+.+++|+..+.++++++...-.-..++.|.++++++|...|.+.++|+.+..
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~ 445 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASAS 445 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence 35679999999999998888777776 56799999999999999987644445566999999999999999999987652
Q ss_pred ceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCC-----CcE--------EEEeeeccCEE
Q 009993 216 PHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRAL-----LKC--------LKVLRHSDWVY 280 (520)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~-----~~~--------~~~~~~~~~v~ 280 (520)
.......|.+.|.+++. |+..+++||.|.+|++||+.- +.. .+++..++.|.
T Consensus 446 -------------l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL 512 (888)
T KOG0306|consen 446 -------------LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVL 512 (888)
T ss_pred -------------hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEE
Confidence 34455689999999999 888999999999999999741 111 13334677888
Q ss_pred EEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeee
Q 009993 281 GLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV 357 (520)
Q Consensus 281 ~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~ 357 (520)
|++ |++++++++- |++|+||-+.+.+....+. ||.-||.||..+||++.++||+.|..|+||-+.-+ .+.
T Consensus 513 ~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLY-GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG------DCH 585 (888)
T KOG0306|consen 513 CVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY-GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG------DCH 585 (888)
T ss_pred EEEEcCCCcEEEEEeccCeEEEEEecceeeeeeec-ccccceeEEeccCCcCeEEeccCCCceEEeccccc------hhh
Confidence 877 9999999999 9999999999998887776 79999999999999999999999999999999999 789
Q ss_pred eeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEE--ecC
Q 009993 358 ATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVD--IGA 433 (520)
Q Consensus 358 ~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~ 433 (520)
..+.+|.+.|.++.|-| ..++++|.|+.|+-||-.+. ...+.+.+|...|+|++ ++|
T Consensus 586 KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kF-------------------e~iq~L~~H~~ev~cLav~~~G 646 (888)
T KOG0306|consen 586 KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF-------------------EEIQKLDGHHSEVWCLAVSPNG 646 (888)
T ss_pred hhhhcccCceeEEEEcccceeEEEecCcceEEeechhhh-------------------hhheeeccchheeeeeEEcCCC
Confidence 99999999999999987 58999999999999998873 44555778887776665 566
Q ss_pred CEEEEecCCCeEEEEeCCch
Q 009993 434 DRIVCGGEEGIVRIWNFSQA 453 (520)
Q Consensus 434 ~~l~sg~~Dg~v~iwd~~~~ 453 (520)
.+++++|.|.+||+|.-...
T Consensus 647 ~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 647 SFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred CeEEeccCCceeEeeeccCc
Confidence 69999999999999997763
No 48
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-31 Score=249.08 Aligned_cols=262 Identities=17% Similarity=0.197 Sum_probs=226.8
Q ss_pred hhhhhcCCCCCCCCCC-CCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC
Q 009993 107 FYCERWGLPIASAPLG-AGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK 181 (520)
Q Consensus 107 ~~~~~~~~~~~~~~~~-~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~ 181 (520)
+-|..++ |..+-.+. --..+..+|+ .+++.+.-..-+|.+..|-+-.+++++|+.|..|+||+..+++.+..|.
T Consensus 16 VKsVd~H-PtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~Fe 94 (794)
T KOG0276|consen 16 VKSVDFH-PTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFE 94 (794)
T ss_pred eeeeecC-CCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEee
Confidence 3455565 33332222 2245668898 5677778888999999999999999999999999999999999999999
Q ss_pred CCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecC
Q 009993 182 PLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWD 256 (520)
Q Consensus 182 ~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~d 256 (520)
.|...|+++. |...+++++|.|-+|++||.+.. ..+...+.||+..|.+++| |.+.+++++-|
T Consensus 95 AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~------------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLD 162 (794)
T KOG0276|consen 95 AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE------------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLD 162 (794)
T ss_pred ccccceeeeeecCCCCeEEecCCccEEEEeeccCc------------eeeeeEEcCcceEEEEEEecCCCccceeeeecc
Confidence 9999999887 88999999999999999999765 5688899999999999999 66899999999
Q ss_pred CeEEEEECCCCcEEEEee-eccCEEEEe----eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCE
Q 009993 257 MTVRVWDRALLKCLKVLR-HSDWVYGLA----PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDF 330 (520)
Q Consensus 257 g~v~iwd~~~~~~~~~~~-~~~~v~~~~----~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 330 (520)
++|++|.+.+..+..++. |...|+|+. .+..++++|+ |.+++|||..+..+++++. ||...|..+.|+|.-.+
T Consensus 163 rTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe-GHt~Nvs~v~fhp~lpi 241 (794)
T KOG0276|consen 163 RTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE-GHTNNVSFVFFHPELPI 241 (794)
T ss_pred ccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh-cccccceEEEecCCCcE
Confidence 999999999999999987 999999999 4556999999 8999999999999999998 79999999999999999
Q ss_pred EEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEE
Q 009993 331 LFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSL 388 (520)
Q Consensus 331 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~v 388 (520)
+++|++||+++||+..+- +...++.-.-..|+|++..+ +.++.|.++|.|.+
T Consensus 242 iisgsEDGTvriWhs~Ty------~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 242 IISGSEDGTVRIWNSKTY------KLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEEecCCccEEEecCcce------ehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999999999999998887 55666666678899999743 67888888887755
No 49
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=5.7e-31 Score=231.85 Aligned_cols=264 Identities=20% Similarity=0.320 Sum_probs=218.8
Q ss_pred CCCcccHH---HhhhhhccccccEEEEEEccCC---CEEEEEeCCCeEEEEECCCCcEE----EEeCCCCceEEEEe--c
Q 009993 125 FSDDKSWK---ELIDVLYGHTEAVLTVFVLASA---KLLFTSGYDSIVRMWHLEDGFSI----ASSKPLGCTIRAVA--A 192 (520)
Q Consensus 125 ~~~~~~W~---~~~~~l~~h~~~V~~l~~~~~~---~~l~sgs~dg~v~vwd~~~~~~~----~~~~~~~~~v~~~~--~ 192 (520)
+...++|+ +.+.++.||+++|.+++|.... ..++++|.|.++++|..+.++.. ....+|...|-+++ +
T Consensus 124 Dg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~ 203 (423)
T KOG0313|consen 124 DGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS 203 (423)
T ss_pred CCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecC
Confidence 45569998 7788999999999988886433 36999999999999999877543 33459999998887 8
Q ss_pred CCCEEEEEeCCCcEEEEEcccCcceeee------------ccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeE
Q 009993 193 DKKLLVAGGTDGFIHCWRAVEVLPHLFD------------ISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTV 259 (520)
Q Consensus 193 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~------------~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v 259 (520)
++..+++|+.|.+|++|+..+.....+. ........+...+.||..+|.++.| +...+++++.|.+|
T Consensus 204 sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTI 283 (423)
T KOG0313|consen 204 SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTI 283 (423)
T ss_pred CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceE
Confidence 9999999999999999994332211111 0112234567889999999999999 77889999999999
Q ss_pred EEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCe--eeEEeecccccceEEEEecCCC-CEEEE
Q 009993 260 RVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGC--LLTVVNGAHVGNTKSLARSHTG-DFLFT 333 (520)
Q Consensus 260 ~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~--~~~~~~~~~~~~i~~l~~s~~~-~~l~t 333 (520)
+.||+.++.++..+..+..+++++ +..++|++|+ |..+++||++++. .+..-..+|.+.|.++.|+|.. ..|++
T Consensus 284 k~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S 363 (423)
T KOG0313|consen 284 KVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVS 363 (423)
T ss_pred EEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEE
Confidence 999999999999999999999998 7888999999 9999999999863 3333334799999999999965 46889
Q ss_pred EeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-CEEEEEeCCCcEEEEeCCc
Q 009993 334 GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 334 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~ 393 (520)
|+.|+++++||++... .++..+.+|...|.++.|+. ..+++|+.|.+|+|+.-..
T Consensus 364 ~S~D~t~klWDvRS~k-----~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 364 GSYDNTVKLWDVRSTK-----APLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred EecCCeEEEEEeccCC-----CcceeeccCCceEEEEeccCCceEEeccCcceEEEecccc
Confidence 9999999999999983 38999999999999999965 6999999999999987543
No 50
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=1.4e-30 Score=257.09 Aligned_cols=267 Identities=26% Similarity=0.410 Sum_probs=226.2
Q ss_pred hhhhhhcCCCCCCCCCCCCCCCcccHHH------hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEEC-CCCcEEE
Q 009993 106 EFYCERWGLPIASAPLGAGFSDDKSWKE------LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHL-EDGFSIA 178 (520)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~------~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~-~~~~~~~ 178 (520)
.+.|..|......+...+.+...++|+. +.+.+.+|...|.+++|+|+++++++|+.|++|+|||+ ..+..++
T Consensus 161 sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~ 240 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLK 240 (456)
T ss_pred ceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEE
Confidence 3456666633333333445666788886 88889999999999999999999999999999999999 5668999
Q ss_pred EeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEe
Q 009993 179 SSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS 254 (520)
Q Consensus 179 ~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s 254 (520)
++.+|...|.+++ ++++.+++|+.|++|++||++++ .....+.+|.+.|++++| ++++|++++
T Consensus 241 ~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~-------------~~~~~l~~hs~~is~~~f~~d~~~l~s~s 307 (456)
T KOG0266|consen 241 TLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG-------------ECVRKLKGHSDGISGLAFSPDGNLLVSAS 307 (456)
T ss_pred EecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC-------------eEEEeeeccCCceEEEEECCCCCEEEEcC
Confidence 9999999998876 88999999999999999999875 367789999999999999 889999999
Q ss_pred cCCeEEEEECCCCc--EEEEee-ecc--CEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeeccccc---ceEEEE
Q 009993 255 WDMTVRVWDRALLK--CLKVLR-HSD--WVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVG---NTKSLA 323 (520)
Q Consensus 255 ~dg~v~iwd~~~~~--~~~~~~-~~~--~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~---~i~~l~ 323 (520)
.|+.|++||+.++. +...+. +.. +++++. +++.+++++. |+.+++||+..+..+..+. +|.. .+.+..
T Consensus 308 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~-~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 308 YDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT-GHSNLVRCIFSPT 386 (456)
T ss_pred CCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec-ccCCcceeEeccc
Confidence 99999999999999 456655 322 466666 8999999999 8899999999999998887 4655 344555
Q ss_pred ecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCC-cCCEEEEEecC--CEEEEEe--CCCcEEEEeCC
Q 009993 324 RSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH-TGPVNSLAFEF--PWLVSAA--GDGKLSLIDVR 392 (520)
Q Consensus 324 ~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~--~~l~s~s--~dg~i~vwd~~ 392 (520)
.++.+.++++|+.|+.|++||+.++ ..+..+.+| ...+..+.+++ +++++++ .|+.+++|...
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~------~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSG------GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCcc------chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 6789999999999999999999988 678889999 88999999976 6888888 68999999764
No 51
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.4e-30 Score=217.52 Aligned_cols=269 Identities=18% Similarity=0.255 Sum_probs=214.8
Q ss_pred EEEEEcc--CCCEEEEE------eCCCeEEEEECCCCcEEEEeC--CCCceEEEE--e-cCCCEEEEEeCCCcEEEEEcc
Q 009993 146 LTVFVLA--SAKLLFTS------GYDSIVRMWHLEDGFSIASSK--PLGCTIRAV--A-ADKKLLVAGGTDGFIHCWRAV 212 (520)
Q Consensus 146 ~~l~~~~--~~~~l~sg------s~dg~v~vwd~~~~~~~~~~~--~~~~~v~~~--~-~~~~~l~sg~~dg~i~vwd~~ 212 (520)
+++.|+| ++++.+++ ...|.+.|-++..+.-+..+. .-......+ + ...+.+++++.||++++||..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 6788998 34433322 236889999986554444332 223334444 3 456789999999999999953
Q ss_pred cCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe---eC
Q 009993 213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA---PH 285 (520)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~---~~ 285 (520)
.. ..++..++.|...|.++.| ....++++|.|++|++|+...++.+.++. |...|.... ..
T Consensus 92 ~~------------s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~ 159 (311)
T KOG0277|consen 92 MP------------SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHI 159 (311)
T ss_pred CC------------CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCC
Confidence 22 4577888999999999999 45678888999999999999999999987 888888877 45
Q ss_pred CCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecC-CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCC
Q 009993 286 DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH-TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH 363 (520)
Q Consensus 286 ~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h 363 (520)
++++++++ |+.+++||++.......++ .|...+.++.|+. +...|+||+.|+.|++||+++-. .++..+.+|
T Consensus 160 ~nlfas~Sgd~~l~lwdvr~~gk~~~i~-ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-----~pl~eL~gh 233 (311)
T KOG0277|consen 160 PNLFASASGDGTLRLWDVRSPGKFMSIE-AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR-----TPLFELNGH 233 (311)
T ss_pred CCeEEEccCCceEEEEEecCCCceeEEE-eccceeEeecccccCCcEEEecCCCceEEEEehhhcc-----ccceeecCC
Confidence 78888888 9999999998754444465 6999999999987 66789999999999999999885 578889999
Q ss_pred cCCEEEEEecC---CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEec---CCEEE
Q 009993 364 TGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG---ADRIV 437 (520)
Q Consensus 364 ~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~ 437 (520)
.-.|+.+.|+| ..|++++.|-+++|||.... ...+.....|+.-+..++++ +.++|
T Consensus 234 ~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~------------------ds~~e~~~~HtEFv~g~Dws~~~~~~vA 295 (311)
T KOG0277|consen 234 GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ------------------DSAIETVDHHTEFVCGLDWSLFDPGQVA 295 (311)
T ss_pred ceEEEEEecCcchhhHhhhccccceEEecccccc------------------hhhhhhhhccceEEeccccccccCceee
Confidence 99999999998 69999999999999999864 44555566788888888875 45999
Q ss_pred EecCCCeEEEEeC
Q 009993 438 CGGEEGIVRIWNF 450 (520)
Q Consensus 438 sg~~Dg~v~iwd~ 450 (520)
+.+.|+.++||+-
T Consensus 296 s~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 296 STGWDELLYVWNP 308 (311)
T ss_pred ecccccceeeecc
Confidence 9999999999984
No 52
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2e-31 Score=233.29 Aligned_cols=280 Identities=15% Similarity=0.238 Sum_probs=225.9
Q ss_pred HhhhhhccccccEEEEEEccCC-CEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEc
Q 009993 133 ELIDVLYGHTEAVLTVFVLASA-KLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRA 211 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~~~~-~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 211 (520)
.++..|.||.++|.|++=+|.. ..+++|+.||.|++||+....++.++..|.+.|..+..+...+++++.|.+|+.|.+
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKI 136 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeec
Confidence 4477789999999999999976 789999999999999999999999999999999999977799999999999999987
Q ss_pred ccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eC-
Q 009993 212 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PH- 285 (520)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~- 285 (520)
... ...++. ..+.+..+.- .++.++|++. .|-|||.....++..+. ..+.|.++. |.
T Consensus 137 ~~~--------------p~~til-g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvE 199 (433)
T KOG0268|consen 137 DGP--------------PLHTIL-GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVE 199 (433)
T ss_pred cCC--------------cceeee-ccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCc
Confidence 542 222222 2344555554 4566888876 49999999888888888 667788887 33
Q ss_pred CCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCc
Q 009993 286 DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT 364 (520)
Q Consensus 286 ~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 364 (520)
...|+++. |+.|.+||++++.++..+. -....+.++|+|.+-.+++|++|..++.||++.-. .++....+|.
T Consensus 200 TsILas~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~-----~p~~v~~dhv 272 (433)
T KOG0268|consen 200 TSILASCASDRSIVLYDLRQASPLKKVI--LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS-----RPLNVHKDHV 272 (433)
T ss_pred chheeeeccCCceEEEecccCCccceee--eeccccceecCccccceeeccccccceehhhhhhc-----ccchhhcccc
Confidence 34566664 9999999999999988875 45667899999988889999999999999999886 6788899999
Q ss_pred CCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccC-cceeeEEEEec--CCEEEEe
Q 009993 365 GPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG-FECNLLSVDIG--ADRIVCG 439 (520)
Q Consensus 365 ~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~sg 439 (520)
+.|.+++|+| +-+++||.|.+|+||..+.+... .+.+. .-..|+++.++ ..++++|
T Consensus 273 sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SR-------------------diYhtkRMq~V~~Vk~S~Dskyi~SG 333 (433)
T KOG0268|consen 273 SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSR-------------------DIYHTKRMQHVFCVKYSMDSKYIISG 333 (433)
T ss_pred eeEEEeccCCCcchhccccccceEEEeecCCCcch-------------------hhhhHhhhheeeEEEEeccccEEEec
Confidence 9999999987 79999999999999999864211 11111 11345666654 5599999
Q ss_pred cCCCeEEEEeCCchHh
Q 009993 440 GEEGIVRIWNFSQAFE 455 (520)
Q Consensus 440 ~~Dg~v~iwd~~~~~~ 455 (520)
|+|+.||+|.....+.
T Consensus 334 Sdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 334 SDDGNVRLWKAKASEK 349 (433)
T ss_pred CCCcceeeeecchhhh
Confidence 9999999999765444
No 53
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.1e-30 Score=249.95 Aligned_cols=290 Identities=17% Similarity=0.207 Sum_probs=204.5
Q ss_pred hhhhc-cccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEE-EEecCC--------------C--E
Q 009993 135 IDVLY-GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR-AVAADK--------------K--L 196 (520)
Q Consensus 135 ~~~l~-~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~-~~~~~~--------------~--~ 196 (520)
.+.+. +|.+.|+++.|++||+|||+||.|+.|+||.+...+....-.+....+. .+..++ . .
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 44566 9999999999999999999999999999999865332111111000000 000000 0 1
Q ss_pred EEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEeee
Q 009993 197 LVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLRH 275 (520)
Q Consensus 197 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 275 (520)
.-.+.....+ +.+.. ...-...+...+.||.+.|.+|.| ..++|+++|.|+||++|++...+|++.|.|
T Consensus 339 ~~~~~~s~~~-~~p~~---------~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~H 408 (712)
T KOG0283|consen 339 SRKGSQSPCV-LLPLK---------AFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSH 408 (712)
T ss_pred cccccCCccc-cCCCc---------cccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEec
Confidence 1111111111 11100 011124567788899999999999 778999999999999999999999999999
Q ss_pred ccCEEEEe---eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccc
Q 009993 276 SDWVYGLA---PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE 351 (520)
Q Consensus 276 ~~~v~~~~---~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~ 351 (520)
.+.|+|++ -|++++++|+ |+.|+||++...+.+.-.. -..-|++++|.|+|+..++|+.+|.+++|+.......
T Consensus 409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D--l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND--LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLV 486 (712)
T ss_pred CCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh--hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEE
Confidence 99999999 5789999999 9999999998887766553 4478999999999999999999999999999887332
Q ss_pred cceeeee---eecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCccee
Q 009993 352 ANVLLVA---TWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECN 425 (520)
Q Consensus 352 ~~~~~~~---~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (520)
....... .-..|. .|+++.|.| +.+++.+.|..|+|+|.++.....+.. ..-.+....
T Consensus 487 ~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfK---------------G~~n~~SQ~ 550 (712)
T KOG0283|consen 487 SDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFK---------------GFRNTSSQI 550 (712)
T ss_pred EeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhc---------------ccccCCcce
Confidence 1111000 001133 799999954 678888999999999996532111100 001112223
Q ss_pred eEEEEecCCEEEEecCCCeEEEEeCCc
Q 009993 426 LLSVDIGADRIVCGGEEGIVRIWNFSQ 452 (520)
Q Consensus 426 v~~~~~~~~~l~sg~~Dg~v~iwd~~~ 452 (520)
-.++..+|++|++|++|..|+||+...
T Consensus 551 ~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 551 SASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred eeeEccCCCEEEEeecCceEEEEeCCC
Confidence 345666888999999999999999843
No 54
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.6e-31 Score=234.63 Aligned_cols=252 Identities=18% Similarity=0.282 Sum_probs=207.7
Q ss_pred CCCCCCCcccHH-------HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC-CCCceE--EEE
Q 009993 121 LGAGFSDDKSWK-------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK-PLGCTI--RAV 190 (520)
Q Consensus 121 ~~~~~~~~~~W~-------~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~-~~~~~v--~~~ 190 (520)
.++.+...-+|+ ++.+++.||..+|..+.|+||.++|++++.|..+.+||+.+|.....+. +++..+ .++
T Consensus 241 saSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W 320 (519)
T KOG0293|consen 241 SASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAW 320 (519)
T ss_pred eccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEE
Confidence 344455567787 6688999999999999999999999999999999999999998887764 333444 455
Q ss_pred ecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEecc-CCCCeEEEEE--cCCEEEEEecCCeEEEEECCCC
Q 009993 191 AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE-HEGPITSLAL--DLTRIYSGSWDMTVRVWDRALL 267 (520)
Q Consensus 191 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~ 267 (520)
.|||..+++|+.|+++..||+...... ...+ ....|.+++. ||+++++.+.|..|++++.++.
T Consensus 321 ~pDg~~~V~Gs~dr~i~~wdlDgn~~~--------------~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~ 386 (519)
T KOG0293|consen 321 CPDGFRFVTGSPDRTIIMWDLDGNILG--------------NWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR 386 (519)
T ss_pred ccCCceeEecCCCCcEEEecCCcchhh--------------cccccccceeEEEEEcCCCcEEEEEecccceeeechhhh
Confidence 599999999999999999998765311 1111 1245788887 9999999999999999999988
Q ss_pred cEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccc--eEEEEecC-CCCEEEEEeCCCeEE
Q 009993 268 KCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGN--TKSLARSH-TGDFLFTGGEDGAIH 341 (520)
Q Consensus 268 ~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~--i~~l~~s~-~~~~l~tg~~dg~i~ 341 (520)
.....+....+|++++ .+++++.+.- +..+++||++....+..+. ||... +-.-||.- +..++++|++|+.|+
T Consensus 387 ~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~-Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvy 465 (519)
T KOG0293|consen 387 VDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF-GHKQGHFIIRSCFGGGNDKFIASGSEDSKVY 465 (519)
T ss_pred hhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh-cccccceEEEeccCCCCcceEEecCCCceEE
Confidence 8877777778888776 7778777777 8999999999888888876 56443 33445543 558999999999999
Q ss_pred EEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCc
Q 009993 342 MYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~ 393 (520)
||+..++ +++.++.||...|+|++|+| .++|+||+||+|+||....
T Consensus 466 IWhr~sg------kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 466 IWHRISG------KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EEEccCC------ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999999 89999999999999999987 6999999999999998865
No 55
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.3e-29 Score=212.23 Aligned_cols=254 Identities=23% Similarity=0.345 Sum_probs=208.9
Q ss_pred CCCCCCcccHHHh-------hhhh-ccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC--cEEEEeCCCCceEEEEe
Q 009993 122 GAGFSDDKSWKEL-------IDVL-YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG--FSIASSKPLGCTIRAVA 191 (520)
Q Consensus 122 ~~~~~~~~~W~~~-------~~~l-~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~--~~~~~~~~~~~~v~~~~ 191 (520)
.+++...++|..- ..+| .+|+..|..++|+|.|++|++||.|.++.||.-..+ +++.++.+|...|.+++
T Consensus 33 cg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Va 112 (312)
T KOG0645|consen 33 CGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVA 112 (312)
T ss_pred ecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEE
Confidence 3445556888733 3333 589999999999999999999999999999987644 67889999999888776
Q ss_pred --cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCCeEEEEECC--
Q 009993 192 --ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRA-- 265 (520)
Q Consensus 192 --~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~-- 265 (520)
.+|++||+++.|+.|-+|.+..+ ....+...+.+|...|..+.|+| ..|+++|.|.+|++|+-.
T Consensus 113 ws~sG~~LATCSRDKSVWiWe~ded----------dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d 182 (312)
T KOG0645|consen 113 WSASGNYLATCSRDKSVWIWEIDED----------DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD 182 (312)
T ss_pred EcCCCCEEEEeeCCCeEEEEEecCC----------CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCC
Confidence 89999999999999999998754 33557788999999999999977 889999999999999876
Q ss_pred -CCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeE
Q 009993 266 -LLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI 340 (520)
Q Consensus 266 -~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i 340 (520)
..++.+++. |...|.++. +.|..+++++ |++++||-..+ .+...|..+++.+.|. ...|++++.|+.|
T Consensus 183 ddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i 255 (312)
T KOG0645|consen 183 DDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAI 255 (312)
T ss_pred CCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----CcchhcccceEeeeec--ccceEeccCCCEE
Confidence 446788887 778898887 7788999999 89999998652 3344588899999997 5689999999999
Q ss_pred EEEEcccCccccceeeee-eecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCC
Q 009993 341 HMYEIINDCTEANVLLVA-TWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVR 392 (520)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~ 392 (520)
++|.............+. .-..|...|+++.|+| ++|++|+.||.|++|.+.
T Consensus 256 ~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 256 RLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 999877543222222222 3457889999999987 699999999999999874
No 56
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=2.9e-31 Score=221.02 Aligned_cols=240 Identities=22% Similarity=0.299 Sum_probs=214.1
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC-CCCceEEEEecCCCEEEEEeCCCcEEEEEccc
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK-PLGCTIRAVAADKKLLVAGGTDGFIHCWRAVE 213 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~ 213 (520)
+.+|.||+++|+...++.+....++++.|-+-+|||.-+|..+.++. .|-....+++.|.++|++|+.+..++|+|++.
T Consensus 52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~ 131 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNR 131 (334)
T ss_pred EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccC
Confidence 77899999999999999998899999999999999999999988885 35555566779999999999999999999876
Q ss_pred CcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEE
Q 009993 214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTV 289 (520)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l 289 (520)
. ..+...+.+|.+.|..+.| ..+.+++.+.|++||+||.+++..++++..+.+|+++. ++|+++
T Consensus 132 p------------~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~il 199 (334)
T KOG0278|consen 132 P------------KAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRIL 199 (334)
T ss_pred C------------CCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEE
Confidence 5 3455677899999999999 66789999999999999999999999999999999877 889999
Q ss_pred EEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeee-cCCcCCEE
Q 009993 290 ASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW-IPHTGPVN 368 (520)
Q Consensus 290 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~ 368 (520)
.++..+.|.+||..+...++.+. -...|.+..++|+...+++|++|..++.||..++ ..+..+ .+|.++|.
T Consensus 200 Tia~gssV~Fwdaksf~~lKs~k--~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg------eEi~~~nkgh~gpVh 271 (334)
T KOG0278|consen 200 TIAYGSSVKFWDAKSFGLLKSYK--MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG------EEIGSYNKGHFGPVH 271 (334)
T ss_pred EEecCceeEEeccccccceeecc--CccccccccccCCCceEEecCcceEEEEEeccCC------ceeeecccCCCCceE
Confidence 99889999999999999988875 5678999999999999999999999999999999 445554 89999999
Q ss_pred EEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993 369 SLAFEF--PWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 369 ~l~~~~--~~l~s~s~dg~i~vwd~~~~ 394 (520)
|+.|+| ...++||.||+|++|.....
T Consensus 272 cVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 272 CVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred EEEECCCCceeeccCCCceEEEEEecCC
Confidence 999987 58899999999999998764
No 57
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=9.5e-29 Score=208.06 Aligned_cols=289 Identities=19% Similarity=0.285 Sum_probs=221.4
Q ss_pred hhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccC
Q 009993 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEV 214 (520)
Q Consensus 137 ~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~ 214 (520)
.|+||..+++.+.++.+|.+|++++.|.+..||-..+|+.+.++.+|...|.++. .+.+.+++|+.|.++++||+++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 4789999999999999999999999999999999999999999999999999987 67889999999999999999998
Q ss_pred cceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec-----CCeEEEEECC-------CCcEEEEee-eccCE
Q 009993 215 LPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-----DMTVRVWDRA-------LLKCLKVLR-HSDWV 279 (520)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-----dg~v~iwd~~-------~~~~~~~~~-~~~~v 279 (520)
. .........+|..+.| ++++++.... .+.|.++|++ ..++...+. +...+
T Consensus 85 k--------------~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ski 150 (327)
T KOG0643|consen 85 K--------------QLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKI 150 (327)
T ss_pred c--------------EEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccce
Confidence 4 2223345678888888 6677665543 3689999998 344455554 55566
Q ss_pred EEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceee
Q 009993 280 YGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL 356 (520)
Q Consensus 280 ~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~ 356 (520)
+..- +-+..+++|. +|.|.+||+++|.....-...|...|+.+.++|+..++++++.|.+-++||+.+- ..
T Consensus 151 t~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl------~v 224 (327)
T KOG0643|consen 151 TSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL------EV 224 (327)
T ss_pred eeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce------ee
Confidence 6544 8899999999 9999999999997666555579999999999999999999999999999999988 56
Q ss_pred eeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeee--ecCCCcccccCcceeeEEEEec
Q 009993 357 VATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVI--EVEPPQRMLHGFECNLLSVDIG 432 (520)
Q Consensus 357 ~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~ 432 (520)
++++. ...||++.+++| ++++.|+.....-|=-..+. .++...++. ..++......+|-.++.+++++
T Consensus 225 ~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r-------~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh 296 (327)
T KOG0643|consen 225 LKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTR-------AGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH 296 (327)
T ss_pred EEEee-ecccccceecccccceEEecCCceeeeeeeeccc-------ccchhhhHHHHHHHHHhccccccccCcceeEEC
Confidence 66654 356999999988 56666654332222211110 111111111 1122233457788777766655
Q ss_pred --CCEEEEecCCCeEEEEeCCch
Q 009993 433 --ADRIVCGGEEGIVRIWNFSQA 453 (520)
Q Consensus 433 --~~~l~sg~~Dg~v~iwd~~~~ 453 (520)
|...++||+||.||+.-++..
T Consensus 297 PdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 297 PDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred CCCcccccCCCCceEEEEEeccc
Confidence 559999999999999877653
No 58
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=3.7e-30 Score=229.04 Aligned_cols=277 Identities=20% Similarity=0.291 Sum_probs=230.3
Q ss_pred HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc--EEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEE
Q 009993 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHC 208 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~v 208 (520)
.....+..|.+.|..+.|-++...|++|+.|..|++|++..++ .+.++.+..+.+.++. +++..+++++.|+.+++
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL 245 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence 5577889999999999999998899999999999999997665 6677778878888776 78899999999999999
Q ss_pred EEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEeeCC
Q 009993 209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHD 286 (520)
Q Consensus 209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~ 286 (520)
|++... ....++.+|++.|+++.| ....+++|+.|.+|+.||+....|.+++-....+..+...+
T Consensus 246 Wnvd~~-------------r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~ 312 (459)
T KOG0288|consen 246 WNVDSL-------------RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSI 312 (459)
T ss_pred eeccch-------------hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecc
Confidence 998765 356678899999999999 34449999999999999999999999888777788888778
Q ss_pred CEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecC---
Q 009993 287 TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP--- 362 (520)
Q Consensus 287 ~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~--- 362 (520)
..+++|. |++|++||.++..+....+ -.+.|+++..++++..|.+++.|.++.++|+++.. ...++..
T Consensus 313 ~~~~SgH~DkkvRfwD~Rs~~~~~sv~--~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e------I~~~~sA~g~ 384 (459)
T KOG0288|consen 313 SDVISGHFDKKVRFWDIRSADKTRSVP--LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE------IRQTFSAEGF 384 (459)
T ss_pred eeeeecccccceEEEeccCCceeeEee--cCcceeeEeeccCCeEEeeecCCCceeeeeccccc------EEEEeecccc
Confidence 8888888 9999999999999998886 44599999999999999999999999999999983 3333332
Q ss_pred -CcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcce--eeEEEEec--CCE
Q 009993 363 -HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC--NLLSVDIG--ADR 435 (520)
Q Consensus 363 -h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~--~~~ 435 (520)
.....+.+.|+| .|+++||.||.|+||++.++... ..+...+. .++++.|+ |..
T Consensus 385 k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE-------------------~~l~~s~s~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 385 KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLE-------------------KVLSLSTSNAAITSLSWNPSGSG 445 (459)
T ss_pred ccccccceeEECCCCceeeeccCCCcEEEEEccCceEE-------------------EEeccCCCCcceEEEEEcCCCch
Confidence 122478888987 69999999999999999985322 22222221 36666655 559
Q ss_pred EEEecCCCeEEEEe
Q 009993 436 IVCGGEEGIVRIWN 449 (520)
Q Consensus 436 l~sg~~Dg~v~iwd 449 (520)
+++++.++.+.+|.
T Consensus 446 Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 446 LLSADKQKAVTLWT 459 (459)
T ss_pred hhcccCCcceEecC
Confidence 99999999999993
No 59
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7e-29 Score=213.66 Aligned_cols=298 Identities=19% Similarity=0.323 Sum_probs=240.0
Q ss_pred HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009993 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR 210 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd 210 (520)
.+++.|.||++.|+.++.......+.+++.|.+.+||.+++|.++.++.+|.+.|.++. +.+.++++++.|++-.||.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 56888999999999999988788999999999999999999999999999999988876 8888999999999999996
Q ss_pred cc----cCc----------c-------eeee------ccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEE
Q 009993 211 AV----EVL----------P-------HLFD------ISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRV 261 (520)
Q Consensus 211 ~~----~~~----------~-------~~~~------~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~i 261 (520)
.. ... . ..-+ ..+.....+...+.+|.+.|.+..| .+..+++++.|.+..+
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl 298 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL 298 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence 21 100 0 0000 1111234456788899999999999 7789999999999999
Q ss_pred EECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCee-eEEeecccccceEEEEecCCCCEEEEEeC
Q 009993 262 WDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCL-LTVVNGAHVGNTKSLARSHTGDFLFTGGE 336 (520)
Q Consensus 262 wd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~-~~~~~~~~~~~i~~l~~s~~~~~l~tg~~ 336 (520)
||+++++.+..+. |....+.++ |..+++++++ |.+.++||.+..-. +..| .+|...|+++.|..+ ..+++|++
T Consensus 299 wDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VF-QGHtdtVTS~vF~~d-d~vVSgSD 376 (481)
T KOG0300|consen 299 WDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVF-QGHTDTVTSVVFNTD-DRVVSGSD 376 (481)
T ss_pred eeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeee-cccccceeEEEEecC-CceeecCC
Confidence 9999999999987 888887776 8888899999 99999999986543 4445 489999999999865 56899999
Q ss_pred CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCC
Q 009993 337 DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEP 414 (520)
Q Consensus 337 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 414 (520)
|.+|++||+++.. .++.++. -..+++.++.+- ..|+.--.+..|++||++......-
T Consensus 377 DrTvKvWdLrNMR-----splATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRl--------------- 435 (481)
T KOG0300|consen 377 DRTVKVWDLRNMR-----SPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARL--------------- 435 (481)
T ss_pred CceEEEeeecccc-----Ccceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccC---------------
Confidence 9999999999885 4455554 345788888853 5677777788999999986433221
Q ss_pred CcccccCcceeeEEEEecCC----EEEEecCCCeEEEEeCCch
Q 009993 415 PQRMLHGFECNLLSVDIGAD----RIVCGGEEGIVRIWNFSQA 453 (520)
Q Consensus 415 ~~~~~~~~~~~v~~~~~~~~----~l~sg~~Dg~v~iwd~~~~ 453 (520)
+...-.+|...|.|.+|..+ -|+++|.|..+.=|++...
T Consensus 436 PrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 436 PRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred CcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 22234688889999998766 6899999999999998754
No 60
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=8.2e-28 Score=255.22 Aligned_cols=304 Identities=17% Similarity=0.247 Sum_probs=222.4
Q ss_pred CCeEEEEECCCCcEEEEe-----CCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEecc
Q 009993 163 DSIVRMWHLEDGFSIASS-----KPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE 235 (520)
Q Consensus 163 dg~v~vwd~~~~~~~~~~-----~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (520)
+|.+++|+..+......+ ..|...|.++. ++++++++|+.|+.|++|+..+.... ..........+ .
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~-----~~~~~~~~~~~-~ 530 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD-----GRDIHYPVVEL-A 530 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc-----ccccccceEEe-c
Confidence 677888888765544333 34777777665 89999999999999999997542100 00001112223 3
Q ss_pred CCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--e-CCCEEEEEc-CCeEEEEECCCCee
Q 009993 236 HEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--P-HDTTVASTS-GSDVYIWDTNSGCL 307 (520)
Q Consensus 236 h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~-~~~~l~~~~-d~~i~iwd~~~~~~ 307 (520)
+...|.+++| ++.+|++++.||+|++||+.+++.+..+. |...|+++. + ++.+|++|+ |+.|++||++++..
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~ 610 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS 610 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE
Confidence 4567899999 35789999999999999999998888886 899999988 3 578899999 99999999999988
Q ss_pred eEEeecccccceEEEEec-CCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEec-CCEEEEEeCCCc
Q 009993 308 LTVVNGAHVGNTKSLARS-HTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE-FPWLVSAAGDGK 385 (520)
Q Consensus 308 ~~~~~~~~~~~i~~l~~s-~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~ 385 (520)
+..+. +...+.++.|+ +++.+|++|+.||.|++||+++.. .++..+.+|...|+++.|. +.+|++++.|++
T Consensus 611 ~~~~~--~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~-----~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ 683 (793)
T PLN00181 611 IGTIK--TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK-----LPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNT 683 (793)
T ss_pred EEEEe--cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC-----ccceEecCCCCCEEEEEEeCCCEEEEEECCCE
Confidence 88876 34679999995 578999999999999999998762 2466778999999999994 589999999999
Q ss_pred EEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeE--EEEecCCEEEEecCCCeEEEEeCCchHhHHHHh---
Q 009993 386 LSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLL--SVDIGADRIVCGGEEGIVRIWNFSQAFEIERRA--- 460 (520)
Q Consensus 386 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--- 460 (520)
|++||++....... ..+...+.+|...+. ++++++.+|++|+.||.|++|+......+....
T Consensus 684 ikiWd~~~~~~~~~-------------~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~ 750 (793)
T PLN00181 684 LKLWDLSMSISGIN-------------ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKT 750 (793)
T ss_pred EEEEeCCCCccccC-------------CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEeccc
Confidence 99999975321000 123344566766544 455566799999999999999986553221100
Q ss_pred -hhhcccccchhhhhccceeeeccCCCccccccc
Q 009993 461 -RALRGIRLENRMRRRKLQTEMSSKGGRTDQCSV 493 (520)
Q Consensus 461 -~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~ 493 (520)
....+.. .......+..++|+|+|..+++++.
T Consensus 751 ~~~~~~~~-~~~~~~~V~~v~ws~~~~~lva~~~ 783 (793)
T PLN00181 751 IDPVSGLE-VDDASQFISSVCWRGQSSTLVAANS 783 (793)
T ss_pred CCcccccc-cCCCCcEEEEEEEcCCCCeEEEecC
Confidence 0000100 1122345789999999999888773
No 61
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.9e-28 Score=233.79 Aligned_cols=280 Identities=20% Similarity=0.251 Sum_probs=229.0
Q ss_pred CCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEE
Q 009993 124 GFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLL 197 (520)
Q Consensus 124 ~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l 197 (520)
.+..++.|+ .++..|.+|.++|..++|+|++.++++|+.|-.|+||+..+.+++.++.+|-..|..+. +.-..|
T Consensus 29 HsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWI 108 (1202)
T KOG0292|consen 29 HSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWI 108 (1202)
T ss_pred cCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceE
Confidence 355678999 78999999999999999999999999999999999999999999999999999888765 677799
Q ss_pred EEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCCeEEEEECCCCc-------
Q 009993 198 VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLK------- 268 (520)
Q Consensus 198 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~~~~------- 268 (520)
+++|.|.+|+||++.+. .++..+.||...|.|..|.+ +.++|+|-|.+|++||+...+
T Consensus 109 lSASDDQTIrIWNwqsr-------------~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg 175 (1202)
T KOG0292|consen 109 LSASDDQTIRIWNWQSR-------------KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPG 175 (1202)
T ss_pred EEccCCCeEEEEeccCC-------------ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCC
Confidence 99999999999999775 47888999999999999955 789999999999999974211
Q ss_pred --------------------E-E-EEee-eccCEEEEeeCC--CEEEEEc-CCeEEEEECCCCee--eEEeecccccceE
Q 009993 269 --------------------C-L-KVLR-HSDWVYGLAPHD--TTVASTS-GSDVYIWDTNSGCL--LTVVNGAHVGNTK 320 (520)
Q Consensus 269 --------------------~-~-~~~~-~~~~v~~~~~~~--~~l~~~~-d~~i~iwd~~~~~~--~~~~~~~~~~~i~ 320 (520)
. + +.+. |...|+-.+.++ .++++|+ |..|++|.+..-+. +.+. .+|.+.|.
T Consensus 176 ~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtc-rgH~nnVs 254 (1202)
T KOG0292|consen 176 SLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTC-RGHYNNVS 254 (1202)
T ss_pred CchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhh-hcccCCcc
Confidence 0 1 1122 666777666444 7899999 79999999875443 2223 37999999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCC-EEEEEeCCCcEEEEeCCcccccCC
Q 009993 321 SLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP-WLVSAAGDGKLSLIDVRKLLRSGR 399 (520)
Q Consensus 321 ~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~ 399 (520)
++-|+|..+++++.++|++|+|||+... ..+.++....+..+.++.+|. -|++++.|+-+.||.+...
T Consensus 255 svlfhp~q~lIlSnsEDksirVwDm~kR------t~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRE----- 323 (1202)
T KOG0292|consen 255 SVLFHPHQDLILSNSEDKSIRVWDMTKR------TSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERE----- 323 (1202)
T ss_pred eEEecCccceeEecCCCccEEEEecccc------cceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEccc-----
Confidence 9999999999999999999999999988 788999888889999999984 5667777888889988752
Q ss_pred CCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHh
Q 009993 400 PTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFE 455 (520)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~ 455 (520)
.++.+++ ++.|.-.- |..|+-+|+.+.+.
T Consensus 324 ------------------------rpa~~v~--~n~LfYvk-d~~i~~~d~~t~~d 352 (1202)
T KOG0292|consen 324 ------------------------RPAYAVN--GNGLFYVK-DRFIRSYDLRTQKD 352 (1202)
T ss_pred ------------------------CceEEEc--CCEEEEEc-cceEEeeecccccc
Confidence 1233333 45333333 88999999987443
No 62
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.5e-29 Score=210.75 Aligned_cols=279 Identities=18% Similarity=0.241 Sum_probs=226.3
Q ss_pred hhhccccccEEEEEEc---cCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009993 136 DVLYGHTEAVLTVFVL---ASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR 210 (520)
Q Consensus 136 ~~l~~h~~~V~~l~~~---~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd 210 (520)
.+..||+.+|-.++|+ |+|-+|++++.|+.=.+-+-++|.-+.+|.+|...|.... .+....++++.|-+-++||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 3457999999999998 4899999999999999989999999999999999998776 4455778899999999999
Q ss_pred cccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcE-EEEee-eccCEEEEe--e
Q 009993 211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKC-LKVLR-HSDWVYGLA--P 284 (520)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~-~~~~v~~~~--~ 284 (520)
..+|. .+. ...|..-|.+++| |.++|++|+.++.+++||++..+. ...+. |++.|..+- .
T Consensus 88 a~tgd-------------elh-sf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~ 153 (334)
T KOG0278|consen 88 AVTGD-------------ELH-SFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH 153 (334)
T ss_pred hhhhh-------------hhh-hhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec
Confidence 98874 222 2368899999999 778999999999999999987643 33343 888888766 4
Q ss_pred CCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCC
Q 009993 285 HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH 363 (520)
Q Consensus 285 ~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h 363 (520)
.++.++++. |++|++||.+++..+..+. ...+|+++.++++|++|.++ ..+.|.+||..+. ..+..+. -
T Consensus 154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~--~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf------~~lKs~k-~ 223 (334)
T KOG0278|consen 154 EDKCILSSADDKTVRLWDHRTGTEVQSLE--FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSF------GLLKSYK-M 223 (334)
T ss_pred cCceEEeeccCCceEEEEeccCcEEEEEe--cCCCCcceeeccCCCEEEEe-cCceeEEeccccc------cceeecc-C
Confidence 555566655 8999999999999999986 67789999999999977665 5678999999887 4444432 2
Q ss_pred cCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EEEEe
Q 009993 364 TGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCG 439 (520)
Q Consensus 364 ~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg 439 (520)
...|.+.+.+| ..+++|+.|+.++.||..++.... ....+|..+|.|+.|+++ ..++|
T Consensus 224 P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~------------------~~nkgh~gpVhcVrFSPdGE~yAsG 285 (334)
T KOG0278|consen 224 PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIG------------------SYNKGHFGPVHCVRFSPDGELYASG 285 (334)
T ss_pred ccccccccccCCCceEEecCcceEEEEEeccCCceee------------------ecccCCCCceEEEEECCCCceeecc
Confidence 34677777777 589999999999999999863221 124788888888887665 99999
Q ss_pred cCCCeEEEEeCCchHhH
Q 009993 440 GEEGIVRIWNFSQAFEI 456 (520)
Q Consensus 440 ~~Dg~v~iwd~~~~~~~ 456 (520)
++||+|++|....++..
T Consensus 286 SEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 286 SEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CCCceEEEEEecCCCch
Confidence 99999999998766543
No 63
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=5.6e-28 Score=206.98 Aligned_cols=241 Identities=18% Similarity=0.273 Sum_probs=191.3
Q ss_pred cccccEEEEEEcc-CCCEEEEEeCCCeEEEEECCC-CcEE-EEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccC
Q 009993 140 GHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLED-GFSI-ASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEV 214 (520)
Q Consensus 140 ~h~~~V~~l~~~~-~~~~l~sgs~dg~v~vwd~~~-~~~~-~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~ 214 (520)
.-.+.|.+++||| ...++++||.|++||+|+++. |..+ +....|..+++++. .+|..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 4568899999999 566777999999999999986 3333 34456888888765 88999999999999999999887
Q ss_pred cceeeeccCCccccceEEeccCCCCeEEEEE-c-C--CEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEeeCCCEEE
Q 009993 215 LPHLFDISGSEKQNTQFRLWEHEGPITSLAL-D-L--TRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVA 290 (520)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~-~--~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~ 290 (520)
....+..|.++|.++.| . . ..|++||.|++|++||++....+.++..+..++++.....+++
T Consensus 105 --------------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~v 170 (347)
T KOG0647|consen 105 --------------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAV 170 (347)
T ss_pred --------------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeE
Confidence 45567789999999999 2 2 3689999999999999999999999999999999996666666
Q ss_pred EEc-CCeEEEEECCCCeee-EEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcc--ccceeeeeeecC---C
Q 009993 291 STS-GSDVYIWDTNSGCLL-TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCT--EANVLLVATWIP---H 363 (520)
Q Consensus 291 ~~~-d~~i~iwd~~~~~~~-~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~--~~~~~~~~~~~~---h 363 (520)
++. +..|.+|+++++... +.....-.-.+.|++..++.+..+.|+-+|.+.|..+..+.. ...+++.+.-.. .
T Consensus 171 Vata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~ 250 (347)
T KOG0647|consen 171 VATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDD 250 (347)
T ss_pred EEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCc
Confidence 665 999999999876443 233333455788999989888889999999999999987632 222233222111 1
Q ss_pred cCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993 364 TGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 364 ~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~ 394 (520)
--.|++|+|+| ..|++++.||++.+||-...
T Consensus 251 VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 251 VYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred eEEecceEeecccceEEEecCCceEEEecchhh
Confidence 23588899998 69999999999999998764
No 64
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-26 Score=200.70 Aligned_cols=279 Identities=16% Similarity=0.210 Sum_probs=224.8
Q ss_pred hhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCC--CceEEEEecCCCEEEEEeC--CCcEEEEEc
Q 009993 136 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPL--GCTIRAVAADKKLLVAGGT--DGFIHCWRA 211 (520)
Q Consensus 136 ~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~l~sg~~--dg~i~vwd~ 211 (520)
+.+..-.+.|.++.|+++|.+|++++.|.++++||..+++.++++..+ +..+.++....+.++.++. |.+|+..++
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence 345556789999999999999999999999999999999999988655 6677777766666666666 889999998
Q ss_pred ccCcceeeeccCCccccceEEeccCCCCeEEEEEc--CCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEeeCCCE
Q 009993 212 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTT 288 (520)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~ 288 (520)
.+. +.+..+.||...|++|+.. ++.+++++.|++|++||++..++...+. ...++.++.|.|-+
T Consensus 88 ~dN-------------kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLi 154 (311)
T KOG1446|consen 88 HDN-------------KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLI 154 (311)
T ss_pred ecC-------------ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcE
Confidence 775 4778899999999999993 4889999999999999999999888887 67788889999999
Q ss_pred EEEEcC-CeEEEEECCCC--eeeEEee--cccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCC
Q 009993 289 VASTSG-SDVYIWDTNSG--CLLTVVN--GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH 363 (520)
Q Consensus 289 l~~~~d-~~i~iwd~~~~--~~~~~~~--~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h 363 (520)
+|++.+ +.|++||++.- .+-..+. .+.....+.+.|+|+|++++.+...+.+++.|.-++ ....++..+
T Consensus 155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G------~~~~tfs~~ 228 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG------TVKSTFSGY 228 (311)
T ss_pred EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC------cEeeeEeec
Confidence 999994 59999999864 2333332 234567899999999999999999999999999988 556666655
Q ss_pred cCCE---EEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccC-cceeeEEEEecCCEEE
Q 009993 364 TGPV---NSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG-FECNLLSVDIGADRIV 437 (520)
Q Consensus 364 ~~~v---~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~ 437 (520)
...- ....|.| +++++|+.||+|.+|+++++... ..+.+ +...+.++.|++.+..
T Consensus 229 ~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v-------------------~~~~~~~~~~~~~~~fnP~~~m 289 (311)
T KOG1446|consen 229 PNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKV-------------------AVLRGPNGGPVSCVRFNPRYAM 289 (311)
T ss_pred cCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEe-------------------eEecCCCCCCccccccCCceee
Confidence 4322 4555655 79999999999999999885322 22333 5677788889999666
Q ss_pred EecCCCeEEEEeCCc
Q 009993 438 CGGEEGIVRIWNFSQ 452 (520)
Q Consensus 438 sg~~Dg~v~iwd~~~ 452 (520)
-++.+..+-+|=...
T Consensus 290 f~sa~s~l~fw~p~~ 304 (311)
T KOG1446|consen 290 FVSASSNLVFWLPDE 304 (311)
T ss_pred eeecCceEEEEeccc
Confidence 666677899997654
No 65
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1e-28 Score=204.06 Aligned_cols=264 Identities=17% Similarity=0.223 Sum_probs=216.1
Q ss_pred hhhhcCCCCCCCC-CCCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCC
Q 009993 108 YCERWGLPIASAP-LGAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP 182 (520)
Q Consensus 108 ~~~~~~~~~~~~~-~~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~ 182 (520)
...+|+. +..+- ....+...++|+ .+++++.||...|..++.+.|...+++|+.|..|.+||+++|+.++.+.+
T Consensus 21 ~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rg 99 (307)
T KOG0316|consen 21 RAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRG 99 (307)
T ss_pred EEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeeccc
Confidence 3445553 22333 333466679999 66999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEE
Q 009993 183 LGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVR 260 (520)
Q Consensus 183 ~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~ 260 (520)
|...|.++. .+...+++|+.|.++++||.++.. ..++..+......|.++...+..+++|+.||+++
T Consensus 100 H~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s-----------~ePiQildea~D~V~Si~v~~heIvaGS~DGtvR 168 (307)
T KOG0316|consen 100 HLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS-----------FEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVR 168 (307)
T ss_pred ccceeeEEEecCcceEEEeccccceeEEEEcccCC-----------CCccchhhhhcCceeEEEecccEEEeeccCCcEE
Confidence 999998877 566799999999999999987643 4567777788899999999999999999999999
Q ss_pred EEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceE--EEEecCCCCEEEEEe
Q 009993 261 VWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTK--SLARSHTGDFLFTGG 335 (520)
Q Consensus 261 iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~--~l~~s~~~~~l~tg~ 335 (520)
.||++.|...... ...+|++++ ++++..++++ |+++++.|-.+|+.+..+. +|...-+ ..+++.....+++|+
T Consensus 169 tydiR~G~l~sDy-~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk-Ghkn~eykldc~l~qsdthV~sgS 246 (307)
T KOG0316|consen 169 TYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK-GHKNMEYKLDCCLNQSDTHVFSGS 246 (307)
T ss_pred EEEeecceeehhh-cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc-ccccceeeeeeeecccceeEEecc
Confidence 9999988765433 455666665 8999888888 9999999999999999887 6876544 445777778999999
Q ss_pred CCCeEEEEEcccCccccceeeeeeecCCcCC-EEEEEecCC--EEEEEeCCCcEEEEeCC
Q 009993 336 EDGAIHMYEIINDCTEANVLLVATWIPHTGP-VNSLAFEFP--WLVSAAGDGKLSLIDVR 392 (520)
Q Consensus 336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~~--~l~s~s~dg~i~vwd~~ 392 (520)
+||.|++||+... ..+..+..+... |++++++|. .|+++.. +.+..|--+
T Consensus 247 EDG~Vy~wdLvd~------~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~~~ 299 (307)
T KOG0316|consen 247 EDGKVYFWDLVDE------TQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWYQE 299 (307)
T ss_pred CCceEEEEEeccc------eeeeeeccCCceeEEeeecccCccceeEecC-Cceeceeeh
Confidence 9999999999998 677778777777 899999983 4555543 346666543
No 66
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.4e-27 Score=200.42 Aligned_cols=277 Identities=18% Similarity=0.172 Sum_probs=222.5
Q ss_pred hhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEE--eCCCCceEEEEe---cCCCEEEEEeCCCcEEEEE
Q 009993 136 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIAS--SKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWR 210 (520)
Q Consensus 136 ~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~--~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd 210 (520)
+.+++|.+.|.+++|+.+|..|++|+.|+++++|+++....... ..+|...|-.+. +....+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 66889999999999999999999999999999999987755443 467877665544 6778999999999999999
Q ss_pred cccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCCC
Q 009993 211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDT 287 (520)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~ 287 (520)
++.+. +........+.+.-... ++++++.++.|..|.+.|.++.+.....+....+.-+. .++.
T Consensus 94 ~r~~k-------------~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd 160 (313)
T KOG1407|consen 94 IRSGK-------------CTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSND 160 (313)
T ss_pred eccCc-------------EEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCC
Confidence 98874 33334333444443333 88999999999999999999998888877666666665 5566
Q ss_pred EEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCC
Q 009993 288 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP 366 (520)
Q Consensus 288 ~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 366 (520)
+++... .|.|.|......+++..+. +|.....|+.|+|+|+++|+|+.|..+.+||+..- .+++.+..+.-+
T Consensus 161 ~Fflt~GlG~v~ILsypsLkpv~si~-AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL------iC~R~isRldwp 233 (313)
T KOG1407|consen 161 LFFLTNGLGCVEILSYPSLKPVQSIK-AHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL------ICERCISRLDWP 233 (313)
T ss_pred EEEEecCCceEEEEeccccccccccc-cCCcceEEEEECCCCceEeeccccceeeccChhHh------hhheeeccccCc
Confidence 666655 6999999999999999997 79999999999999999999999999999999888 889999999999
Q ss_pred EEEEEe--cCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EEEEecCC
Q 009993 367 VNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEE 442 (520)
Q Consensus 367 v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~D 442 (520)
|+.++| ++++|++||.|..|-|=++.++.+... -.+..+...++|+++ +||-+++|
T Consensus 234 VRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~e--------------------I~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 234 VRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWE--------------------IPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eEEEEeccCcceeeccCccceEEeEecccCCeEEE--------------------eeccCCceeEEecCCCceeeEEecC
Confidence 999999 468999999999999999988633211 113445566777776 66655543
Q ss_pred ---------CeEEEEeCCc
Q 009993 443 ---------GIVRIWNFSQ 452 (520)
Q Consensus 443 ---------g~v~iwd~~~ 452 (520)
|.|++|-+++
T Consensus 294 k~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 294 KDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred CCCccccccceeEEecCCC
Confidence 5677776543
No 67
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=4.3e-28 Score=221.58 Aligned_cols=292 Identities=15% Similarity=0.170 Sum_probs=217.9
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC-------cEEEEeCCCCceEEEEecCCCEEEEEeCCCcEE
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-------FSIASSKPLGCTIRAVAADKKLLVAGGTDGFIH 207 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~ 207 (520)
-..|++|+..|.++++.|.|..|+|||.|-+|++||+... +.+.....|......+++.+..|++.+.....+
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 3467899999999999999999999999999999999744 223334567778888889999999999889999
Q ss_pred EEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC---CEEEEEecCCeEEEEECCCC-cEEEEeee------cc
Q 009993 208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL---TRIYSGSWDMTVRVWDRALL-KCLKVLRH------SD 277 (520)
Q Consensus 208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~v~iwd~~~~-~~~~~~~~------~~ 277 (520)
++|-... .......+.....-.....||...++|.+|++ ..+++++.||++++||+... +.+.++.+ .-
T Consensus 240 l~DRdG~-~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 240 LLDRDGF-EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred EEccCCc-eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 9985432 22222223333334456679999999999944 67999999999999999754 34444442 12
Q ss_pred CEE--EEeeCCCEEEEEc-CCeEEEEECCCC--eeeEEeeccccc--ceEEEEecCCCCEEEEEeCCCeEEEEEcccCcc
Q 009993 278 WVY--GLAPHDTTVASTS-GSDVYIWDTNSG--CLLTVVNGAHVG--NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCT 350 (520)
Q Consensus 278 ~v~--~~~~~~~~l~~~~-d~~i~iwd~~~~--~~~~~~~~~~~~--~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~ 350 (520)
+++ .+.++++++++|. ||.|.+||.... .+...+..+|.. .|+++.||++|++|++-+.|+++++||++...
T Consensus 319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k- 397 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK- 397 (641)
T ss_pred CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc-
Confidence 233 3448999999999 999999998554 334445557877 99999999999999999999999999999885
Q ss_pred ccceeeeeeecC--CcCCEEEEEecC--CEEEEEeC------CCcEEEEeCCcccccCCCCCCCceeeeeecCCCccccc
Q 009993 351 EANVLLVATWIP--HTGPVNSLAFEF--PWLVSAAG------DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH 420 (520)
Q Consensus 351 ~~~~~~~~~~~~--h~~~v~~l~~~~--~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (520)
+++....+ ..-+-+.++|+| .+|++|+. .|.+.+||..+.....+ +.
T Consensus 398 ----kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~k-------------------i~ 454 (641)
T KOG0772|consen 398 ----KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYK-------------------ID 454 (641)
T ss_pred ----cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEE-------------------ec
Confidence 34444333 233567888988 57788765 57899999887532211 12
Q ss_pred CcceeeEEEEecCC--EEEEecCCCeEEEEeCC
Q 009993 421 GFECNLLSVDIGAD--RIVCGGEEGIVRIWNFS 451 (520)
Q Consensus 421 ~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~ 451 (520)
-.+..|..+.|+++ .|..|+.||.+++|==.
T Consensus 455 i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 455 ISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred CCCceEEEEeecchhhheeeecCCCceEEEECc
Confidence 22567778888887 88889999999987433
No 68
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=2.3e-28 Score=209.83 Aligned_cols=282 Identities=15% Similarity=0.262 Sum_probs=225.5
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC------------------cEEEEeCCCCceEEEEe--cCC
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG------------------FSIASSKPLGCTIRAVA--ADK 194 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~------------------~~~~~~~~~~~~v~~~~--~~~ 194 (520)
...+..|++++.+.+|+|||.+++|||.|..|+|.|++.. -.++++..|...|.++. |..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 3457889999999999999999999999999999998721 24667778888877665 899
Q ss_pred CEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEE
Q 009993 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKV 272 (520)
Q Consensus 195 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~ 272 (520)
..|++|+.|++|+++|..... .+..+.......+|.++.| .|.+|+.|..-.++++||+.+.++...
T Consensus 185 ~ILiS~srD~tvKlFDfsK~s-----------aKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs 253 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTS-----------AKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS 253 (430)
T ss_pred heEEeccCCCeEEEEecccHH-----------HHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee
Confidence 999999999999999985431 1223334455678999999 778999999999999999999988765
Q ss_pred ee----eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeeccccc-ceEEEEecCCCCEEEEEeCCCeEEEEE
Q 009993 273 LR----HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVG-NTKSLARSHTGDFLFTGGEDGAIHMYE 344 (520)
Q Consensus 273 ~~----~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~-~i~~l~~s~~~~~l~tg~~dg~i~iwd 344 (520)
-. |.+.|+++. +.+++.++++ ||.|++||--+++++.++..+|.+ .|.+..|..+|+++++.+.|..+++|.
T Consensus 254 anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWE 333 (430)
T KOG0640|consen 254 ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWE 333 (430)
T ss_pred cCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeee
Confidence 53 889999998 7899999999 999999999999999999888865 688899999999999999999999999
Q ss_pred cccCccccceeeeeeecCCc--C---CEEEEEecC--CEEEEEe-CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCc
Q 009993 345 IINDCTEANVLLVATWIPHT--G---PVNSLAFEF--PWLVSAA-GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQ 416 (520)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~h~--~---~v~~l~~~~--~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (520)
+.++ .++..+.|.. + --+...|+. ++++.-. ..+.+.-||.++..+. .
T Consensus 334 i~t~------R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~------------------~ 389 (430)
T KOG0640|consen 334 ISTG------RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRV------------------A 389 (430)
T ss_pred ecCC------ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhh------------------h
Confidence 9999 6666665531 1 123334543 5555544 4578999999985322 2
Q ss_pred ccccCcceeeEEEEecCC--EEEEecCCCeEEEEeCC
Q 009993 417 RMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFS 451 (520)
Q Consensus 417 ~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~ 451 (520)
....+|...+..+..++. .++|++.|-.+|+|--+
T Consensus 390 l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 390 LLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred hcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 223567777777766654 99999999999999643
No 69
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=2.8e-27 Score=221.71 Aligned_cols=263 Identities=29% Similarity=0.439 Sum_probs=217.7
Q ss_pred hhhhhcCCCCCCCCC-CCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC
Q 009993 107 FYCERWGLPIASAPL-GAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK 181 (520)
Q Consensus 107 ~~~~~~~~~~~~~~~-~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~ 181 (520)
+.+..|. |...... .+......+|+ +....+.+|...+.++.|+|+++++++++.||.|++|++.+++.+..+.
T Consensus 12 i~~~~~~-~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~ 90 (289)
T cd00200 12 VTCVAFS-PDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT 90 (289)
T ss_pred EEEEEEc-CCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEe
Confidence 4555665 3433332 23345557787 3456788999999999999999999999999999999999988888888
Q ss_pred CCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc--CCEEEEEecCC
Q 009993 182 PLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSWDM 257 (520)
Q Consensus 182 ~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg 257 (520)
.|...+.++. +++.++++++.||.|.+||+.++. ....+..|...|.++.++ +.++++++.|+
T Consensus 91 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 157 (289)
T cd00200 91 GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-------------CLTTLRGHTDWVNSVAFSPDGTFVASSSQDG 157 (289)
T ss_pred ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-------------EEEEeccCCCcEEEEEEcCcCCEEEEEcCCC
Confidence 8887777766 667888888889999999987542 344556789999999994 46777777799
Q ss_pred eEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEE
Q 009993 258 TVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFT 333 (520)
Q Consensus 258 ~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~t 333 (520)
.|++||+++++.+..+. +...+.++. ++++.+++++ ++.|++||+++++.+..+. .|...+.+++|+|++.++++
T Consensus 158 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~ 236 (289)
T cd00200 158 TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR-GHENGVNSVAFSPDGYLLAS 236 (289)
T ss_pred cEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh-hcCCceEEEEEcCCCcEEEE
Confidence 99999999888888776 666888877 6776888887 9999999999988888775 58889999999999889998
Q ss_pred EeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEe
Q 009993 334 GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLID 390 (520)
Q Consensus 334 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd 390 (520)
++.||.|++||+.++ .....+..|...|.++.|++ .+|++++.||.|++|+
T Consensus 237 ~~~~~~i~i~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 237 GSEDGTIRVWDLRTG------ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EcCCCcEEEEEcCCc------eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 888999999999887 56777778999999999987 7999999999999996
No 70
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=4.8e-27 Score=202.13 Aligned_cols=265 Identities=18% Similarity=0.246 Sum_probs=207.2
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCcceee
Q 009993 141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLF 219 (520)
Q Consensus 141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 219 (520)
-.+.|..|.|+|.+..|+.+++||++++||+........+ .|..++++++ .+...+++|+.||.|+.+|+.++
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~----- 85 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTG----- 85 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCCceEEEeccCceEEEEEecCC-----
Confidence 3678999999999999999999999999999877444333 4778888887 66789999999999999999887
Q ss_pred eccCCccccceEEeccCCCCeEEEEEc--CCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEeeCCCEEEEEc-CCe
Q 009993 220 DISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTS-GSD 296 (520)
Q Consensus 220 ~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~ 296 (520)
....+..|..+|+|+.+. .+.+++||.|++|++||.+.......+.....|.+++..++.|++|. +..
T Consensus 86 ---------~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~ 156 (323)
T KOG1036|consen 86 ---------NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRK 156 (323)
T ss_pred ---------cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCce
Confidence 345667899999999994 68899999999999999998777777777889999998888877766 999
Q ss_pred EEEEECCCCeeeEEe-ecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCc---------CC
Q 009993 297 VYIWDTNSGCLLTVV-NGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT---------GP 366 (520)
Q Consensus 297 i~iwd~~~~~~~~~~-~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~---------~~ 366 (520)
|.+||+++....... ...-.-.+.++++-|++.-+++++-||.|.+=.++..+... .....++.|. -+
T Consensus 157 v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~--skkyaFkCHr~~~~~~~~~yP 234 (323)
T KOG1036|consen 157 VLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ--SKKYAFKCHRLSEKDTEIIYP 234 (323)
T ss_pred EEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh--hhceeEEeeecccCCceEEEE
Confidence 999999987654322 23456689999999988889999999999886665552111 1222333442 37
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeE--EEEecCCEEEEecC
Q 009993 367 VNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLL--SVDIGADRIVCGGE 441 (520)
Q Consensus 367 v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~ 441 (520)
|++|+|+| ..|+||+.||.|.+||+.+..+. ..++....+|. +++.+|..||+|+.
T Consensus 235 VNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl-------------------~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 235 VNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL-------------------KQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eceeEeccccceEEecCCCceEEEccCcchhhh-------------------hhccCCCCceEEEEeccCCCeEEEEec
Confidence 99999998 68999999999999999874322 23344434444 44455668888875
No 71
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.9e-26 Score=187.74 Aligned_cols=283 Identities=17% Similarity=0.256 Sum_probs=225.8
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEECC------CCc---------EEEEeCCCCceEEE--EecCCCEEEEEeC
Q 009993 140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLE------DGF---------SIASSKPLGCTIRA--VAADKKLLVAGGT 202 (520)
Q Consensus 140 ~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~------~~~---------~~~~~~~~~~~v~~--~~~~~~~l~sg~~ 202 (520)
.-+..|.+++|+|.|.+.+.|+..++.+|-... .+. ..+..+.|...|.| ++|+|.+|++|+.
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence 346789999999999999999999999987542 221 11223456666665 5599999999999
Q ss_pred CCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-c-----CCEEEEEe-cCCeEEEEECCCCcEEEEee-
Q 009993 203 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-D-----LTRIYSGS-WDMTVRVWDRALLKCLKVLR- 274 (520)
Q Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~-----~~~l~s~s-~dg~v~iwd~~~~~~~~~~~- 274 (520)
|.+|++........ ........+.-|.+.|..++| + +..|++++ .|..|++-|..+++..+.+.
T Consensus 110 dk~ik~l~fn~dt~--------~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg 181 (350)
T KOG0641|consen 110 DKTIKVLPFNADTC--------NATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG 181 (350)
T ss_pred CceEEEEecccccc--------cccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC
Confidence 99999976544321 112244556679999999999 2 24566654 57788888999999888887
Q ss_pred eccCEEEEe-eCCCEEEEEc-CCeEEEEECCCCeeeEEeecc-c-----ccceEEEEecCCCCEEEEEeCCCeEEEEEcc
Q 009993 275 HSDWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGA-H-----VGNTKSLARSHTGDFLFTGGEDGAIHMYEII 346 (520)
Q Consensus 275 ~~~~v~~~~-~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~-~-----~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~ 346 (520)
|.+.|.++- .++-++++|+ |.+|++||++-..++..+... | .+.|.+++..|.|++|++|-.|....+||++
T Consensus 182 htghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir 261 (350)
T KOG0641|consen 182 HTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR 261 (350)
T ss_pred CcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee
Confidence 999999987 8999999999 999999999999888877531 2 3578999999999999999999999999999
Q ss_pred cCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcce
Q 009993 347 NDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC 424 (520)
Q Consensus 347 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (520)
.+ ..++.+.+|...|+|+.|+| .++++++.|..|++-|+...... +.+..+...|..
T Consensus 262 g~------r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~---------------el~~~vv~ehkd 320 (350)
T KOG0641|consen 262 GG------RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH---------------ELPIMVVAEHKD 320 (350)
T ss_pred CC------ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhh---------------cCceEEEEeccC
Confidence 99 88999999999999999998 59999999999999999753211 233444566777
Q ss_pred eeEEEEecCC--EEEEecCCCeEEEEeCC
Q 009993 425 NLLSVDIGAD--RIVCGGEEGIVRIWNFS 451 (520)
Q Consensus 425 ~v~~~~~~~~--~l~sg~~Dg~v~iwd~~ 451 (520)
.+..+.|.+. -+++.+.|.++.+|-+.
T Consensus 321 k~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 321 KAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEEecCccceeeeccCcceEEEeccC
Confidence 7777777776 78899999999999764
No 72
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=6.6e-29 Score=214.42 Aligned_cols=278 Identities=19% Similarity=0.330 Sum_probs=223.7
Q ss_pred Hhhhhh-ccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEe--------CCCCceEEEEe--cCCCEEEEEe
Q 009993 133 ELIDVL-YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS--------KPLGCTIRAVA--ADKKLLVAGG 201 (520)
Q Consensus 133 ~~~~~l-~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~--------~~~~~~v~~~~--~~~~~l~sg~ 201 (520)
.+.+.+ .|.+..+-|..|+|||++|++||.||.|-|||..+|+..+.+ .-+..+|.|++ .|...+++|+
T Consensus 203 ~l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs 282 (508)
T KOG0275|consen 203 QLARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS 282 (508)
T ss_pred HhhhheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccC
Confidence 444444 467788999999999999999999999999999999765433 33566777665 7888999999
Q ss_pred CCCcEEEEEcccCcceeeeccCCccccceEEec-cCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-ecc
Q 009993 202 TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSD 277 (520)
Q Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~ 277 (520)
.||.|++|.+.+|. +...+. .|+..|+|+.| |+..+++++.|.++++.-+.+|++++.++ |..
T Consensus 283 qDGkIKvWri~tG~-------------ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS 349 (508)
T KOG0275|consen 283 QDGKIKVWRIETGQ-------------CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS 349 (508)
T ss_pred cCCcEEEEEEecch-------------HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccc
Confidence 99999999999984 444444 79999999999 88899999999999999999999999998 899
Q ss_pred CEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeec-ccccceEEEEecC-CCCEEEEEeCCCeEEEEEcccCcccc
Q 009993 278 WVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG-AHVGNTKSLARSH-TGDFLFTGGEDGAIHMYEIINDCTEA 352 (520)
Q Consensus 278 ~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~-~~~~~i~~l~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~~ 352 (520)
.|+... ++|..+++++ ||+|++|+.++.+++.++.. +...+|+++..-| +...++++...++|+|.++...
T Consensus 350 yvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ---- 425 (508)
T KOG0275|consen 350 YVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ---- 425 (508)
T ss_pred cccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce----
Confidence 898765 8999999999 99999999999999988874 3455788888777 4568889999999999998665
Q ss_pred ceeeeeeecC---CcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeE
Q 009993 353 NVLLVATWIP---HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLL 427 (520)
Q Consensus 353 ~~~~~~~~~~---h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 427 (520)
.+.++.. ..+...+...+| .++.+.+.|+.++.+.+.++ ...+.+.-|...+.
T Consensus 426 ---vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG-------------------~LE~tl~VhEkdvI 483 (508)
T KOG0275|consen 426 ---VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG-------------------KLERTLPVHEKDVI 483 (508)
T ss_pred ---EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC-------------------ceeeeeeccccccc
Confidence 4444432 233444445555 79999999999999998874 33344455665666
Q ss_pred EEEecC--CEEEEecCCCeEEEEe
Q 009993 428 SVDIGA--DRIVCGGEEGIVRIWN 449 (520)
Q Consensus 428 ~~~~~~--~~l~sg~~Dg~v~iwd 449 (520)
.+..++ +.+++-++||.+++|.
T Consensus 484 Gl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 484 GLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccccCcccchhhhhcccchhhhcC
Confidence 665444 5999999999999995
No 73
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.9e-28 Score=218.90 Aligned_cols=240 Identities=21% Similarity=0.337 Sum_probs=205.7
Q ss_pred HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe---cCCCEEEEEeCCCcEEEE
Q 009993 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCW 209 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vw 209 (520)
...+++.-..+.|+++.|-.||++|++|...|.|+|||+.+...++.+.+|+.++.... .++..+++|+.|+.+++|
T Consensus 59 ~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~ 138 (487)
T KOG0310|consen 59 SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYW 138 (487)
T ss_pred hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEE
Confidence 45667778889999999999999999999999999999777667788889988876654 567788999999999999
Q ss_pred EcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCC-cEEEEeeeccCEEEEe--
Q 009993 210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALL-KCLKVLRHSDWVYGLA-- 283 (520)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~v~~~~-- 283 (520)
|+.+.. ....+.+|++.|.|.++ ++..++|||.||+|++||+++. ..+..+.|..+|..+.
T Consensus 139 d~s~a~-------------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~l 205 (487)
T KOG0310|consen 139 DLSTAY-------------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLAL 205 (487)
T ss_pred EcCCcE-------------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEc
Confidence 997762 35578899999999999 4568999999999999999987 7888888999999987
Q ss_pred eCCCEEEEEcCCeEEEEECCCCee-eEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecC
Q 009993 284 PHDTTVASTSGSDVYIWDTNSGCL-LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP 362 (520)
Q Consensus 284 ~~~~~l~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 362 (520)
|.|..++++++..|++||+.+|.. +.... .|...|+|+.+..++..|++|+-|+.+++||+.+- +.+..+ .
T Consensus 206 psgs~iasAgGn~vkVWDl~~G~qll~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~------Kvv~s~-~ 277 (487)
T KOG0310|consen 206 PSGSLIASAGGNSVKVWDLTTGGQLLTSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY------KVVHSW-K 277 (487)
T ss_pred CCCCEEEEcCCCeEEEEEecCCceehhhhh-cccceEEEEEeecCCceEeecccccceEEEEccce------EEEEee-e
Confidence 888999999999999999996644 44443 49999999999999999999999999999997776 555555 3
Q ss_pred CcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993 363 HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 363 h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 393 (520)
-.++|.+++.+| +.++.|..||.+.+=+...
T Consensus 278 ~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 278 YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred cccceeeEEecCCCceEEEecccceeeeehhhc
Confidence 567999999977 7999999999888775443
No 74
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.4e-28 Score=203.29 Aligned_cols=232 Identities=17% Similarity=0.156 Sum_probs=196.6
Q ss_pred ccccEEEEEEccC-CCEEEEEeCCCeEEEEECCC-CcEEEEeCCCCceEEEEe---cCCCEEEEEeCCCcEEEEEcccCc
Q 009993 141 HTEAVLTVFVLAS-AKLLFTSGYDSIVRMWHLED-GFSIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWRAVEVL 215 (520)
Q Consensus 141 h~~~V~~l~~~~~-~~~l~sgs~dg~v~vwd~~~-~~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~~ 215 (520)
-.+.+..++|+++ .+.+++++.||++++||+.. ..++..++.|...|.++. .++..+++++.|++|++|+...+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~- 137 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP- 137 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC-
Confidence 3578899999985 56888999999999999643 367888999999999997 45678889999999999997543
Q ss_pred ceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe---eCCCE
Q 009993 216 PHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA---PHDTT 288 (520)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~---~~~~~ 288 (520)
..+.++.+|...|....| .++.++++|.|+++++||++.......+. |...+.++. .+.+.
T Consensus 138 ------------~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~v 205 (311)
T KOG0277|consen 138 ------------NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNV 205 (311)
T ss_pred ------------cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcE
Confidence 467779999999999999 66899999999999999998654333355 888898887 67889
Q ss_pred EEEEc-CCeEEEEECCCCe-eeEEeecccccceEEEEecCCC-CEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcC
Q 009993 289 VASTS-GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG 365 (520)
Q Consensus 289 l~~~~-d~~i~iwd~~~~~-~~~~~~~~~~~~i~~l~~s~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 365 (520)
+++|+ |+.|++||+++-+ ++..+ .+|.-.|..++|||.. ..|++++.|-+++|||...+. ..+.+...|+.
T Consensus 206 l~Tg~vd~~vr~wDir~~r~pl~eL-~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d-----s~~e~~~~HtE 279 (311)
T KOG0277|consen 206 LATGGVDNLVRGWDIRNLRTPLFEL-NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD-----SAIETVDHHTE 279 (311)
T ss_pred EEecCCCceEEEEehhhccccceee-cCCceEEEEEecCcchhhHhhhccccceEEecccccch-----hhhhhhhccce
Confidence 99999 9999999999864 56666 4899999999999954 688999999999999998654 45667778999
Q ss_pred CEEEEEec---CCEEEEEeCCCcEEEEeC
Q 009993 366 PVNSLAFE---FPWLVSAAGDGKLSLIDV 391 (520)
Q Consensus 366 ~v~~l~~~---~~~l~s~s~dg~i~vwd~ 391 (520)
-|..+.|+ |.++++.+.|+.++||+.
T Consensus 280 Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 280 FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EEeccccccccCceeeecccccceeeecc
Confidence 99999995 589999999999999984
No 75
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=1e-27 Score=226.68 Aligned_cols=269 Identities=24% Similarity=0.395 Sum_probs=213.5
Q ss_pred hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEE--EeCCCCceEEE-Ee---cCCCEEEEEeCCCcEE
Q 009993 134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA--SSKPLGCTIRA-VA---ADKKLLVAGGTDGFIH 207 (520)
Q Consensus 134 ~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~--~~~~~~~~v~~-~~---~~~~~l~sg~~dg~i~ 207 (520)
+.+.+.||...|..+++.+ +..++++|.||++++|+-..++.+. .+.+|...+.. ++ .++..+++|+.|++|.
T Consensus 6 ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred eEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence 4577899999999998864 4579999999999999976555443 35555554433 32 4556799999999999
Q ss_pred EEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--
Q 009993 208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA-- 283 (520)
Q Consensus 208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~-- 283 (520)
+|...+. .+...+.+|...|.+++. ....+++||.|.++++|-. +++...+. |+..|.++.
T Consensus 85 v~~~~~~-------------~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l 149 (745)
T KOG0301|consen 85 VFKLSQA-------------EPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASL 149 (745)
T ss_pred EEecCCC-------------CchhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeec
Confidence 9998664 467789999999999997 4445999999999999986 44555565 999999988
Q ss_pred eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecC
Q 009993 284 PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP 362 (520)
Q Consensus 284 ~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 362 (520)
+.+ .+++|+ |.+|++|.- ++.++++. +|...|+.+++-+++ .+++++.||.|++|++ ++ ..+.++.+
T Consensus 150 ~e~-~~vTgsaDKtIklWk~--~~~l~tf~-gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~g------e~l~~~~g 217 (745)
T KOG0301|consen 150 PEN-TYVTGSADKTIKLWKG--GTLLKTFS-GHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DG------EVLLEMHG 217 (745)
T ss_pred CCC-cEEeccCcceeeeccC--Cchhhhhc-cchhheeeeEEecCC-CeEeecCCceEEEEec-cC------ceeeeeec
Confidence 455 777777 999999986 67788887 699999999998765 4779999999999999 44 57889999
Q ss_pred CcCCEEEEEe--cCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEec-CCEEEEe
Q 009993 363 HTGPVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG-ADRIVCG 439 (520)
Q Consensus 363 h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~sg 439 (520)
|+.-|++++. +.+.+++++.|++++||+.... ...+.-.+..++++..- ..-|++|
T Consensus 218 htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~---------------------~q~I~lPttsiWsa~~L~NgDIvvg 276 (745)
T KOG0301|consen 218 HTNFVYSISMALSDGLIVSTGEDRTLRIWKKDEC---------------------VQVITLPTTSIWSAKVLLNGDIVVG 276 (745)
T ss_pred cceEEEEEEecCCCCeEEEecCCceEEEeecCce---------------------EEEEecCccceEEEEEeeCCCEEEe
Confidence 9999999995 4579999999999999998632 22223333456665543 3468999
Q ss_pred cCCCeEEEEeCC
Q 009993 440 GEEGIVRIWNFS 451 (520)
Q Consensus 440 ~~Dg~v~iwd~~ 451 (520)
++||.||||..+
T Consensus 277 ~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 277 GSDGRVRVFTVD 288 (745)
T ss_pred ccCceEEEEEec
Confidence 999999999987
No 76
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=8.1e-27 Score=232.02 Aligned_cols=291 Identities=19% Similarity=0.259 Sum_probs=229.7
Q ss_pred ccccEEEEEEccCCCEEEEEe--CCCeEEEEECCC------------CcEEEEeCCCCceEEEE--ecCCCEEEEEeCCC
Q 009993 141 HTEAVLTVFVLASAKLLFTSG--YDSIVRMWHLED------------GFSIASSKPLGCTIRAV--AADKKLLVAGGTDG 204 (520)
Q Consensus 141 h~~~V~~l~~~~~~~~l~sgs--~dg~v~vwd~~~------------~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg 204 (520)
+...|.+++.+|+|..++||+ .|+.++||+.+. .+.+.+...|...|.|+ ++||.+||+|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 456799999999999999999 899999998742 23445667788888776 59999999999999
Q ss_pred cEEEEEccc-Ccceeee----ccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-ec
Q 009993 205 FIHCWRAVE-VLPHLFD----ISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HS 276 (520)
Q Consensus 205 ~i~vwd~~~-~~~~~~~----~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~ 276 (520)
.|.+|+... +....+. ....+..+....+.+|.+.|.+++| ++.++++++.|++|.+||..+.+.+.++. |.
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~ 171 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ 171 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccc
Confidence 999999874 1111111 1122456678889999999999999 67899999999999999999999999998 99
Q ss_pred cCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecc-----cccceEEEEecCCCCEEEEEeC----CCeEEEEE
Q 009993 277 DWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGA-----HVGNTKSLARSHTGDFLFTGGE----DGAIHMYE 344 (520)
Q Consensus 277 ~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~-----~~~~i~~l~~s~~~~~l~tg~~----dg~i~iwd 344 (520)
..|..+. |-|+++++-+ |++|++|++.+....+.+... -...+..+.|+|||++|++... -.++.|.+
T Consensus 172 s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie 251 (942)
T KOG0973|consen 172 SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE 251 (942)
T ss_pred ccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEe
Confidence 9998887 8899999988 899999998876666665421 2335788999999999998533 34588888
Q ss_pred cccCccccceeeeeeecCCcCCEEEEEecC-------C------------EEEEEeCCCcEEEEeCCcccccCCCCCCCc
Q 009993 345 IINDCTEANVLLVATWIPHTGPVNSLAFEF-------P------------WLVSAAGDGKLSLIDVRKLLRSGRPTSGKR 405 (520)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-------~------------~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 405 (520)
-.+. +.-..+.||.+++.++.|+| . .+|+|+.|++|.||.....
T Consensus 252 R~tW------k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~----------- 314 (942)
T KOG0973|consen 252 RGTW------KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP----------- 314 (942)
T ss_pred cCCc------eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC-----------
Confidence 7666 66778899999999999975 2 6789999999999998653
Q ss_pred eeeeeecCCCcccccCcceeeEEEEec--CCEEEEecCCCeEEEEeCCchHh
Q 009993 406 VSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVCGGEEGIVRIWNFSQAFE 455 (520)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~~~~~ 455 (520)
.+.....+-...+|..++|+ |-.|..+|.||+|.+..+++...
T Consensus 315 -------RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 315 -------RPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred -------CchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 22222222233445555554 66999999999999999987554
No 77
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=8.2e-28 Score=214.19 Aligned_cols=247 Identities=17% Similarity=0.240 Sum_probs=208.0
Q ss_pred CCCCcccHH------HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCC
Q 009993 124 GFSDDKSWK------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKK 195 (520)
Q Consensus 124 ~~~~~~~W~------~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~ 195 (520)
.+...+.|+ +++.+|.|-.++|+.++|.++++++++++.|+.+++|++...+...++.+|...|+++. ....
T Consensus 195 ~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~ 274 (459)
T KOG0288|consen 195 SDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHS 274 (459)
T ss_pred hhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhcccc
Confidence 345568998 57889999999999999999999999999999999999999999999999999999987 3344
Q ss_pred EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEeee
Q 009993 196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRH 275 (520)
Q Consensus 196 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 275 (520)
.+++|+.|.+|+.||+....+ ..++ -....+.+|...+..+++|-.|++|++||.++..+......
T Consensus 275 ~vVsgs~DRtiK~WDl~k~~C-------------~kt~-l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~ 340 (459)
T KOG0288|consen 275 RVVSGSADRTIKLWDLQKAYC-------------SKTV-LPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPL 340 (459)
T ss_pred ceeeccccchhhhhhhhhhhe-------------eccc-cccccccceEecceeeeecccccceEEEeccCCceeeEeec
Confidence 499999999999999976421 1111 23445666666778899999999999999999999999997
Q ss_pred ccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeec---ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCc
Q 009993 276 SDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG---AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC 349 (520)
Q Consensus 276 ~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~---~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~ 349 (520)
.+.|+++. +++..+.+++ |.++.+.|+++.+....+.. ......+.+.|||++.|+++|+.||.|+||++.++
T Consensus 341 gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg- 419 (459)
T KOG0288|consen 341 GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG- 419 (459)
T ss_pred CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc-
Confidence 88999988 8888888888 99999999999887776652 11334889999999999999999999999999999
Q ss_pred cccceeeeeeecCCcC--CEEEEEecC--CEEEEEeCCCcEEEEe
Q 009993 350 TEANVLLVATWIPHTG--PVNSLAFEF--PWLVSAAGDGKLSLID 390 (520)
Q Consensus 350 ~~~~~~~~~~~~~h~~--~v~~l~~~~--~~l~s~s~dg~i~vwd 390 (520)
++...+..... .|++++|+| ..|++++.++.+.+|.
T Consensus 420 -----KlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 420 -----KLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred -----eEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 56655555444 599999976 7999999999999993
No 78
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.5e-27 Score=214.03 Aligned_cols=286 Identities=21% Similarity=0.307 Sum_probs=215.5
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEE----E-------------e-CCCCceEEEE--ecCC
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA----S-------------S-KPLGCTIRAV--AADK 194 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~----~-------------~-~~~~~~v~~~--~~~~ 194 (520)
++.+..|.-+|+||+++|++++.++++.|++|.=|++.+|+... + - +.|...+.++ ++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 56678899999999999999999999999999999998886331 1 0 2555556554 5999
Q ss_pred CEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEE
Q 009993 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKV 272 (520)
Q Consensus 195 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~ 272 (520)
++|++|+.|..|.||+..+.. .+..+.+|.+.|.+++| ..+.+++++.|++|++|+++....+.
T Consensus 215 kylatgg~d~~v~Iw~~~t~e-------------hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ve- 280 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLE-------------HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVE- 280 (479)
T ss_pred cEEEecCCCceEEEecCcccc-------------hhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHH-
Confidence 999999999999999998763 56668999999999999 55789999999999999987654332
Q ss_pred eeeccCEEEEeeCCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcccc
Q 009993 273 LRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA 352 (520)
Q Consensus 273 ~~~~~~v~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~ 352 (520)
++. +|...|..+.....++.+.+|+.|+++++|++...
T Consensus 281 -------------------------------------tly-GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee---- 318 (479)
T KOG0299|consen 281 -------------------------------------TLY-GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE---- 318 (479)
T ss_pred -------------------------------------HHh-CCccceeeechhcccceEEeccccceeEEEecccc----
Confidence 233 69999999988888888888999999999999544
Q ss_pred ceeeeeeecCCcCCEEEEEe-cCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCccccc-CcceeeEEEE
Q 009993 353 NVLLVATWIPHTGPVNSLAF-EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH-GFECNLLSVD 430 (520)
Q Consensus 353 ~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~ 430 (520)
....+.+|.+.+-|++| +..++++|+.||.|.+|++.+....+.......+. +...... ..-...+++.
T Consensus 319 ---sqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~------~~~~~~~~~~Witsla~i 389 (479)
T KOG0299|consen 319 ---SQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI------PELDPVNGNFWITSLAVI 389 (479)
T ss_pred ---ceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeecccccc------CCccccccccceeeeEec
Confidence 34456789999999999 67899999999999999998764443322111110 0000000 1123344455
Q ss_pred ecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccc
Q 009993 431 IGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCS 492 (520)
Q Consensus 431 ~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s 492 (520)
+..+++++|+.+|.|++|.++++...-.+...+. ..--+..++|+++|+++.++.
T Consensus 390 ~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-------~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 390 PGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-------LVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred ccCceEEecCCCCceEEEEecCCccccceeeecc-------cccEEEEEEEccCCCEEEEec
Confidence 6667999999999999999998854222222111 223367899999999887763
No 79
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2.4e-28 Score=211.01 Aligned_cols=261 Identities=20% Similarity=0.293 Sum_probs=218.2
Q ss_pred hhhcCCCCCCCC-CCCCCCCcccHH----Hh--------hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 009993 109 CERWGLPIASAP-LGAGFSDDKSWK----EL--------IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF 175 (520)
Q Consensus 109 ~~~~~~~~~~~~-~~~~~~~~~~W~----~~--------~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~ 175 (520)
|.+|+ |++.++ ..+-+.....|+ ++ ...|.-|.++|.|+.|+.|...|++|+.||.|+||.+.+|.
T Consensus 218 cA~FS-PDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ 296 (508)
T KOG0275|consen 218 CARFS-PDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ 296 (508)
T ss_pred heeeC-CCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecch
Confidence 45565 444433 233345557788 22 33455688999999999999999999999999999999999
Q ss_pred EEEEeC-CCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEE
Q 009993 176 SIASSK-PLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRI 250 (520)
Q Consensus 176 ~~~~~~-~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l 250 (520)
+++.|. .|...|+|++ .|+..+++++.|.++++--+.+|. ....+.||.+.|+...| +|..+
T Consensus 297 ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK-------------~LKEfrGHsSyvn~a~ft~dG~~i 363 (508)
T KOG0275|consen 297 CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK-------------CLKEFRGHSSYVNEATFTDDGHHI 363 (508)
T ss_pred HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch-------------hHHHhcCccccccceEEcCCCCeE
Confidence 999986 7888887766 789999999999999999887763 66678899999999999 88999
Q ss_pred EEEecCCeEEEEECCCCcEEEEee---eccCEEEEe---eCCCEEEEEc-CCeEEEEECCCCeeeEEeeccc--ccceEE
Q 009993 251 YSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLA---PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAH--VGNTKS 321 (520)
Q Consensus 251 ~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~---~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~--~~~i~~ 321 (520)
++++.||+|++|+..+.+|+.+++ ...+|+++- .+...++++. .++|+|.++. |+.++.+..+. .+...+
T Consensus 364 isaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~ 442 (508)
T KOG0275|consen 364 ISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFIN 442 (508)
T ss_pred EEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEE
Confidence 999999999999999999999987 455677766 4567778887 8999999875 67777776443 456778
Q ss_pred EEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEe
Q 009993 322 LARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLID 390 (520)
Q Consensus 322 l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd 390 (520)
.+.+|.|.++.+.++|+.++.|.+.++ ....++..|...|..++-+| +.|++-+.||.+++|.
T Consensus 443 ~~lSpkGewiYcigED~vlYCF~~~sG------~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 443 AILSPKGEWIYCIGEDGVLYCFSVLSG------KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEecCCCcEEEEEccCcEEEEEEeecC------ceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 889999999999999999999999999 77888889999999999987 7899999999999995
No 80
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=8.4e-27 Score=212.27 Aligned_cols=285 Identities=19% Similarity=0.284 Sum_probs=219.9
Q ss_pred CCcccHHHh-hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEE--ecCCCEEEEEeC
Q 009993 126 SDDKSWKEL-IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AADKKLLVAGGT 202 (520)
Q Consensus 126 ~~~~~W~~~-~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~ 202 (520)
...+.|++. ...+....+.|.+++|+|...+=++....-.+.+|+..+....+++......+.+. ..||.++++|..
T Consensus 9 ~e~~~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~ 88 (487)
T KOG0310|consen 9 PEIRYWRQETFPPVHKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDE 88 (487)
T ss_pred ccchhhhhhcccccccccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCC
Confidence 445678754 23334455789999999965432322334669999998887777665555555554 488999999999
Q ss_pred CCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCcEEEEee-eccC
Q 009993 203 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDW 278 (520)
Q Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~ 278 (520)
.|.|+++|..+ ......+.+|+.+|..+.| ++..+++|+.|+.+++||+.+......+. |.+.
T Consensus 89 sG~V~vfD~k~-------------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDY 155 (487)
T KOG0310|consen 89 SGHVKVFDMKS-------------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDY 155 (487)
T ss_pred cCcEEEecccc-------------HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcce
Confidence 99999999644 2355678899999999998 66789999999999999999988654554 9999
Q ss_pred EEEEe---eCCCEEEEEc-CCeEEEEECCCC-eeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccc
Q 009993 279 VYGLA---PHDTTVASTS-GSDVYIWDTNSG-CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN 353 (520)
Q Consensus 279 v~~~~---~~~~~l~~~~-d~~i~iwd~~~~-~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~ 353 (520)
|.|.+ .++.++++|+ ||.|++||++.. ..+..+ .|..+|..+.+-|.|..+++++. ..|++||+-++.
T Consensus 156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el--nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~---- 228 (487)
T KOG0310|consen 156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL--NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGG---- 228 (487)
T ss_pred eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe--cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCc----
Confidence 99988 4566889999 999999999987 566666 49999999999999999998864 469999999764
Q ss_pred eeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEE-
Q 009993 354 VLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVD- 430 (520)
Q Consensus 354 ~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~- 430 (520)
+.+..+..|...|+|+.+.. ..|++|+-|+.|++||+.+...... -....+|++++
T Consensus 229 -qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s--------------------~~~~~pvLsiav 287 (487)
T KOG0310|consen 229 -QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHS--------------------WKYPGPVLSIAV 287 (487)
T ss_pred -eehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEe--------------------eecccceeeEEe
Confidence 45666666999999999954 8999999999999999776432221 12334555555
Q ss_pred -ecCCEEEEecCCCeEEEEeCC
Q 009993 431 -IGADRIVCGGEEGIVRIWNFS 451 (520)
Q Consensus 431 -~~~~~l~sg~~Dg~v~iwd~~ 451 (520)
++++.++.|..||.+.+=+..
T Consensus 288 s~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 288 SPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred cCCCceEEEecccceeeeehhh
Confidence 455699999999988776443
No 81
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.7e-28 Score=226.28 Aligned_cols=230 Identities=23% Similarity=0.363 Sum_probs=196.4
Q ss_pred EEEEc-cCCCEEEEEeCCCeEEEEECCCCc------EEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcce
Q 009993 147 TVFVL-ASAKLLFTSGYDSIVRMWHLEDGF------SIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPH 217 (520)
Q Consensus 147 ~l~~~-~~~~~l~sgs~dg~v~vwd~~~~~------~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~ 217 (520)
.+..+ |.+++|+|||.||.|++|++.... .+.+++.|...|..+. -+++.|+++|.|-+|++|+...+.
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-- 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-- 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc--
Confidence 44444 467789999999999999986432 3667788888877655 778899999999999999986542
Q ss_pred eeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCC--cEEEEee----------eccCEEEE
Q 009993 218 LFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALL--KCLKVLR----------HSDWVYGL 282 (520)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~----------~~~~v~~~ 282 (520)
-.+..++..|...|.|+++ +...+++|+-|+.|.+||+.++ +.+..+. +...|+++
T Consensus 107 ---------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL 177 (735)
T KOG0308|consen 107 ---------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL 177 (735)
T ss_pred ---------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeee
Confidence 2356677889999999999 6678999999999999999987 2333221 56788998
Q ss_pred e--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeee
Q 009993 283 A--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT 359 (520)
Q Consensus 283 ~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~ 359 (520)
+ +.+..+++|+ .+.+++||.++++.+..+. ||...|.++..++||..+++++.||+|++||+... .++.+
T Consensus 178 A~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ------rCl~T 250 (735)
T KOG0308|consen 178 AMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ------RCLAT 250 (735)
T ss_pred ecCCcceEEEecCcccceEEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeecccc------ceeee
Confidence 8 5566888888 8999999999999999998 89999999999999999999999999999999998 89999
Q ss_pred ecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993 360 WIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 360 ~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~ 394 (520)
+..|...|+++..+| .++++|+.||.|..=|+++.
T Consensus 251 ~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 251 YIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 999999999999988 69999999999999999985
No 82
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.7e-26 Score=197.86 Aligned_cols=256 Identities=19% Similarity=0.308 Sum_probs=205.8
Q ss_pred EEEEeCCCeEEEEECCCC------------cEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCC
Q 009993 157 LFTSGYDSIVRMWHLEDG------------FSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGS 224 (520)
Q Consensus 157 l~sgs~dg~v~vwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~ 224 (520)
+++|++...|.=+++.-. .++..+..|..++.+++-++.++++|+.|-+|+|||+...
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~---------- 73 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKR---------- 73 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccch----------
Confidence 667777776666665321 2244567899999999999999999999999999998764
Q ss_pred ccccceEEeccCCCCeEEEEEcC----CEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCe
Q 009993 225 EKQNTQFRLWEHEGPITSLALDL----TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSD 296 (520)
Q Consensus 225 ~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~ 296 (520)
.....+..|.+.|+++.|.+ +.|++|+.||.|.+|+....+++..++ |.+.|+.++ |.+++.++.+ |+.
T Consensus 74 ---~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~ 150 (362)
T KOG0294|consen 74 ---KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQV 150 (362)
T ss_pred ---hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCce
Confidence 35556778999999999944 379999999999999999999999998 888899988 8888877766 999
Q ss_pred EEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe-cCC
Q 009993 297 VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF-EFP 375 (520)
Q Consensus 297 i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~ 375 (520)
++.||+-+|+.-......+. .+.+.|+|.|.+++.++.++ |-+|.+.+. .....+. ....+.++.| +..
T Consensus 151 lr~WNLV~Gr~a~v~~L~~~--at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A------~v~~~i~-~~~r~l~~~~l~~~ 220 (362)
T KOG0294|consen 151 LRTWNLVRGRVAFVLNLKNK--ATLVSWSPQGDHFVVSGRNK-IDIYQLDNA------SVFREIE-NPKRILCATFLDGS 220 (362)
T ss_pred eeeehhhcCccceeeccCCc--ceeeEEcCCCCEEEEEeccE-EEEEecccH------hHhhhhh-ccccceeeeecCCc
Confidence 99999999987666653333 34499999999998887765 889998876 2332222 2245778888 568
Q ss_pred EEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEec----CCEEEEecCCCeEEEEeCC
Q 009993 376 WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG----ADRIVCGGEEGIVRIWNFS 451 (520)
Q Consensus 376 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~sg~~Dg~v~iwd~~ 451 (520)
.|++|+.|+.|.+||-.+ ..+...+.+|...|-++.+- +.+|+|+|.||.|+|||++
T Consensus 221 ~L~vG~d~~~i~~~D~ds-------------------~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 221 ELLVGGDNEWISLKDTDS-------------------DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred eEEEecCCceEEEeccCC-------------------CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 999999999999999987 34555678899888888743 2499999999999999998
Q ss_pred chH
Q 009993 452 QAF 454 (520)
Q Consensus 452 ~~~ 454 (520)
...
T Consensus 282 ~~~ 284 (362)
T KOG0294|consen 282 MET 284 (362)
T ss_pred ccc
Confidence 763
No 83
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=4.6e-26 Score=204.28 Aligned_cols=271 Identities=20% Similarity=0.247 Sum_probs=224.6
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeee
Q 009993 143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFD 220 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 220 (520)
..|+++...|....++||+.|.++.++|..+++.+..++||...|..+. ++...+++++.|..|+||.....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~------ 293 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS------ 293 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc------
Confidence 5788998888878999999999999999999999999999999998876 78889999999999999997543
Q ss_pred ccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeecc---CEEEEe--eCCCEEEEEc
Q 009993 221 ISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSD---WVYGLA--PHDTTVASTS 293 (520)
Q Consensus 221 ~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~---~v~~~~--~~~~~l~~~~ 293 (520)
........|..+|+.+.. .+.||++++.||+..+.|++++.++....+.. .+++.. |||.++.+|.
T Consensus 294 -------s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt 366 (506)
T KOG0289|consen 294 -------SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT 366 (506)
T ss_pred -------cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC
Confidence 244556689999999998 78999999999999999999999998887642 255554 9999999999
Q ss_pred -CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecC-CcCCEEEEE
Q 009993 294 -GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP-HTGPVNSLA 371 (520)
Q Consensus 294 -d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~ 371 (520)
|+.|+|||+.++..+..|. +|.++|..++|+.+|-+|+++++|+.|++||++.. +...++.- ....|.++.
T Consensus 367 ~d~~vkiwdlks~~~~a~Fp-ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl------~n~kt~~l~~~~~v~s~~ 439 (506)
T KOG0289|consen 367 PDGVVKIWDLKSQTNVAKFP-GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL------KNFKTIQLDEKKEVNSLS 439 (506)
T ss_pred CCceEEEEEcCCccccccCC-CCCCceeEEEeccCceEEEEEecCCeEEEEEehhh------cccceeeccccccceeEE
Confidence 9999999999999999997 69999999999999999999999999999999987 33444332 223789999
Q ss_pred ec--CCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EEEEecCCCeEEE
Q 009993 372 FE--FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRI 447 (520)
Q Consensus 372 ~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~i 447 (520)
|+ +.+|+.++.|=.|++++-.+.. -.....+..|.+....+.|... +++++|.|..+++
T Consensus 440 fD~SGt~L~~~g~~l~Vy~~~k~~k~-----------------W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 440 FDQSGTYLGIAGSDLQVYICKKKTKS-----------------WTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRL 502 (506)
T ss_pred EcCCCCeEEeecceeEEEEEeccccc-----------------ceeeehhhhcccccceeeecccceEEeeccchhheEE
Confidence 96 4799999888666666644311 2223345566666777777655 9999999999998
Q ss_pred EeC
Q 009993 448 WNF 450 (520)
Q Consensus 448 wd~ 450 (520)
+.+
T Consensus 503 ~a~ 505 (506)
T KOG0289|consen 503 YAL 505 (506)
T ss_pred eec
Confidence 865
No 84
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.7e-25 Score=219.81 Aligned_cols=237 Identities=17% Similarity=0.238 Sum_probs=179.3
Q ss_pred hhccccccEEEEEEcc-CCCEEEEEeCCCeEEEEECCCC-------cEEEEeCCCCceEEEEe--cCC-CEEEEEeCCCc
Q 009993 137 VLYGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLEDG-------FSIASSKPLGCTIRAVA--ADK-KLLVAGGTDGF 205 (520)
Q Consensus 137 ~l~~h~~~V~~l~~~~-~~~~l~sgs~dg~v~vwd~~~~-------~~~~~~~~~~~~v~~~~--~~~-~~l~sg~~dg~ 205 (520)
.+.||.+.|++++|+| ++++|++|+.|++|++||+.++ ..+..+.+|...|.++. |++ ++|++|+.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999 8899999999999999999765 35677889988887766 654 69999999999
Q ss_pred EEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEE--
Q 009993 206 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVY-- 280 (520)
Q Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~-- 280 (520)
|++||+.++. ....+.+|...|.+++| ++.+|++++.|++|++||+++++.+..+. |...+.
T Consensus 150 VrIWDl~tg~-------------~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~ 216 (493)
T PTZ00421 150 VNVWDVERGK-------------AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQR 216 (493)
T ss_pred EEEEECCCCe-------------EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceE
Confidence 9999997753 44567789999999999 77899999999999999999999888776 554322
Q ss_pred EE-eeCCCEEEEEc-----CCeEEEEECCCCe-eeEEeecccccceEEEEecCCCCEEEEEe-CCCeEEEEEcccCcccc
Q 009993 281 GL-APHDTTVASTS-----GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTGDFLFTGG-EDGAIHMYEIINDCTEA 352 (520)
Q Consensus 281 ~~-~~~~~~l~~~~-----d~~i~iwd~~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~tg~-~dg~i~iwd~~~~~~~~ 352 (520)
++ .+++..+++++ |+.|++||+++.. ++......+...+....|++++++|++|+ .|+.|++||+.++
T Consensus 217 ~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~---- 292 (493)
T PTZ00421 217 CLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE---- 292 (493)
T ss_pred EEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC----
Confidence 22 25556665532 5899999998764 33333222344566677999999999887 5999999999987
Q ss_pred ceeeeeee-cCCcCCEEEEEecCCEEEEEeCCCcEEEEeCC
Q 009993 353 NVLLVATW-IPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVR 392 (520)
Q Consensus 353 ~~~~~~~~-~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~ 392 (520)
..+... ..+..++..++|.|.+-+-...--..++|.+.
T Consensus 293 --~~~~~~~~~s~~~~~g~~~~pk~~~dv~~~Ei~r~~~l~ 331 (493)
T PTZ00421 293 --RLTFCSSYSSVEPHKGLCMMPKWSLDTRKCEIARFYALT 331 (493)
T ss_pred --ceEEEeeccCCCCCcceEecccccccccceeeeEEEEec
Confidence 333333 23556788888887544333333334555543
No 85
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.6e-26 Score=197.05 Aligned_cols=236 Identities=18% Similarity=0.277 Sum_probs=202.8
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecC----CCEEEEEeCCCcEEEEE
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAAD----KKLLVAGGTDGFIHCWR 210 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----~~~l~sg~~dg~i~vwd 210 (520)
.-.+..|.+.|++++. ++.++|+||.|.+|+|||+.+...+..+-.|.+.|+++... ...|++|+.||.|.+|+
T Consensus 36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred cccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 4457899999999999 49999999999999999999999999999999999998732 23799999999999999
Q ss_pred cccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee--eccCEEEEeeCC
Q 009993 211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLAPHD 286 (520)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~ 286 (520)
... ......+.+|.+.|+.++. .++..++.+.|+.++.||+-+|+.-...+ +......+.+.|
T Consensus 114 ~~~-------------W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~G 180 (362)
T KOG0294|consen 114 VGS-------------WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQG 180 (362)
T ss_pred cCC-------------eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCC
Confidence 744 4577889999999999999 56788899999999999999988766665 556666666999
Q ss_pred CEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCC
Q 009993 287 TTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP 366 (520)
Q Consensus 287 ~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 366 (520)
.+++.+....|-+|.+.+......+. ....+.++.|. ++..|++|++|+.|.+||.... .+...+.+|...
T Consensus 181 d~F~v~~~~~i~i~q~d~A~v~~~i~--~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~------~~~~~~~AH~~R 251 (362)
T KOG0294|consen 181 DHFVVSGRNKIDIYQLDNASVFREIE--NPKRILCATFL-DGSELLVGGDNEWISLKDTDSD------TPLTEFLAHENR 251 (362)
T ss_pred CEEEEEeccEEEEEecccHhHhhhhh--ccccceeeeec-CCceEEEecCCceEEEeccCCC------ccceeeecchhh
Confidence 99999999999999998877766664 33556677775 6778999999999999999887 788889999999
Q ss_pred EEEEEe--cC--CEEEEEeCCCcEEEEeCCcc
Q 009993 367 VNSLAF--EF--PWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 367 v~~l~~--~~--~~l~s~s~dg~i~vwd~~~~ 394 (520)
|-++.+ +| .+|+++|.||.|+|||++..
T Consensus 252 VK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 252 VKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 999996 22 59999999999999999874
No 86
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.5e-25 Score=183.00 Aligned_cols=240 Identities=20% Similarity=0.244 Sum_probs=195.4
Q ss_pred hhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcE-----EEEeCCCCceEEEEe------cCCCEEEEEeC-CC
Q 009993 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS-----IASSKPLGCTIRAVA------ADKKLLVAGGT-DG 204 (520)
Q Consensus 137 ~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~-----~~~~~~~~~~v~~~~------~~~~~l~sg~~-dg 204 (520)
.-+.|.+.|+|.+|+|+|+++++|+.|++|++.......+ -..+.-|...|..++ ..+..|++++. |.
T Consensus 84 r~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc 163 (350)
T KOG0641|consen 84 RNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC 163 (350)
T ss_pred eccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence 3467999999999999999999999999999987654322 224556888888776 23446666543 56
Q ss_pred cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEE-EcCCEEEEEecCCeEEEEECCCCcEEEEee---e-----
Q 009993 205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLA-LDLTRIYSGSWDMTVRVWDRALLKCLKVLR---H----- 275 (520)
Q Consensus 205 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~----- 275 (520)
.|++-|..+|. ....+.+|++.|.++- |++-.+++|+.|.+|++||++-..++.++. |
T Consensus 164 ~iy~tdc~~g~-------------~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gle 230 (350)
T KOG0641|consen 164 KIYITDCGRGQ-------------GFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLE 230 (350)
T ss_pred eEEEeecCCCC-------------cceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcc
Confidence 66666665553 5667889999999875 499999999999999999999999998885 2
Q ss_pred ccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcccc
Q 009993 276 SDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA 352 (520)
Q Consensus 276 ~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~ 352 (520)
...|.+++ |.|+++++|. |....+||++.++.++.+. +|...|.++.|+|...++++++.|..|++-|+...-.
T Consensus 231 ssavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~-phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla-- 307 (350)
T KOG0641|consen 231 SSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH-PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLA-- 307 (350)
T ss_pred cceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC-CCccceeEEEeCCCceEEEEecccceEEEeecccchh--
Confidence 24566655 9999999999 9999999999999999998 6999999999999999999999999999999876521
Q ss_pred ceeeeeeecCCcCCEEEEEecCC--EEEEEeCCCcEEEEeCC
Q 009993 353 NVLLVATWIPHTGPVNSLAFEFP--WLVSAAGDGKLSLIDVR 392 (520)
Q Consensus 353 ~~~~~~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~ 392 (520)
.-.++.....|...+..+.|+|. .+++.+.|.++.+|-+.
T Consensus 308 ~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 308 HELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred hcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 11345566789999999999984 67899999999999764
No 87
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.7e-26 Score=217.11 Aligned_cols=248 Identities=21% Similarity=0.222 Sum_probs=215.2
Q ss_pred CcccHHHh----hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCC-CCceEEEEecCCCEEEEEe
Q 009993 127 DDKSWKEL----IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP-LGCTIRAVAADKKLLVAGG 201 (520)
Q Consensus 127 ~~~~W~~~----~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sg~ 201 (520)
...+|+.. ......+.+.|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ |...|-+++.++..+.+|+
T Consensus 198 ~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGs 277 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGS 277 (484)
T ss_pred eEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEec
Confidence 44677732 222334489999999999999999999999999999999999999998 9999999999999999999
Q ss_pred CCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccC
Q 009993 202 TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDW 278 (520)
Q Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~ 278 (520)
.|+.|..+|++.... ....+.+|...|..+.| ++.++++|+.|+.+.|||....+.+..+. |...
T Consensus 278 r~~~I~~~dvR~~~~------------~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aA 345 (484)
T KOG0305|consen 278 RDGKILNHDVRISQH------------VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAA 345 (484)
T ss_pred CCCcEEEEEEecchh------------hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEecccee
Confidence 999999999977531 12247889999999999 88999999999999999997777777665 9999
Q ss_pred EEEEe---eCCCEEEEEc---CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEE--EeCCCeEEEEEcccCcc
Q 009993 279 VYGLA---PHDTTVASTS---GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFT--GGEDGAIHMYEIINDCT 350 (520)
Q Consensus 279 v~~~~---~~~~~l~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~t--g~~dg~i~iwd~~~~~~ 350 (520)
|.+++ ....+||+|+ |+.|++||..++..+..+. ..+.|..|.|++..+-|++ |..++.|.||+..+.
T Consensus 346 VKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd--tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-- 421 (484)
T KOG0305|consen 346 VKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD--TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-- 421 (484)
T ss_pred eeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc--cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc--
Confidence 99988 4567888876 7999999999999999886 6789999999999877776 555778999999997
Q ss_pred ccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993 351 EANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 351 ~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~ 394 (520)
..+..+.+|...|..++++| ..+++|+.|.++++|++-..
T Consensus 422 ----~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 422 ----KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ----ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 78999999999999999987 69999999999999999763
No 88
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.7e-27 Score=219.63 Aligned_cols=340 Identities=19% Similarity=0.268 Sum_probs=250.3
Q ss_pred hcCCCCCCC-CCCCCCCCcccHH----------HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC--cEE
Q 009993 111 RWGLPIASA-PLGAGFSDDKSWK----------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG--FSI 177 (520)
Q Consensus 111 ~~~~~~~~~-~~~~~~~~~~~W~----------~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~--~~~ 177 (520)
+...|..++ ..+..+...+.|+ ..+..++.|++.|..+.+..+++.|+++|.|-+|++|+...+ -++
T Consensus 31 q~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~ 110 (735)
T KOG0308|consen 31 QLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCM 110 (735)
T ss_pred cccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhH
Confidence 334455552 2333355568887 257889999999999999999999999999999999999877 577
Q ss_pred EEeCCCCceEEEEe---cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEec-cCCCCeEEEEEcC--CEEE
Q 009993 178 ASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLALDL--TRIY 251 (520)
Q Consensus 178 ~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~--~~l~ 251 (520)
.++..|...|.|++ .+...+|+|+.|+.|.+||+.++.... ...........+. |+..+|.+++.++ ..++
T Consensus 111 stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l---~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~iv 187 (735)
T KOG0308|consen 111 STIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATL---VASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIV 187 (735)
T ss_pred hhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhh---hhhccccccccCCCCCccceeeeecCCcceEEE
Confidence 88899999999987 578899999999999999999874311 1111122333344 8999999999955 4899
Q ss_pred EEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCC
Q 009993 252 SGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT 327 (520)
Q Consensus 252 s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~ 327 (520)
+|+..+.+++||.++.+.+..++ |.+.|.++- .+|..+++++ ||+|++||+...+++.++. .|...|+++..+|+
T Consensus 188 sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~-vH~e~VWaL~~~~s 266 (735)
T KOG0308|consen 188 SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI-VHKEGVWALQSSPS 266 (735)
T ss_pred ecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE-eccCceEEEeeCCC
Confidence 99999999999999998888777 999999877 8899999998 9999999999999999987 69999999999999
Q ss_pred CCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEec--CCEEEEEeCCCcEEEEeCCcccccCCC-----
Q 009993 328 GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVRKLLRSGRP----- 400 (520)
Q Consensus 328 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~----- 400 (520)
-..+++|+.||.|..=|+++.. ....+-....+|..+..+ .+-+-+++.|+.|+-|...........
T Consensus 267 f~~vYsG~rd~~i~~Tdl~n~~------~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~ 340 (735)
T KOG0308|consen 267 FTHVYSGGRDGNIYRTDLRNPA------KSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDF 340 (735)
T ss_pred cceEEecCCCCcEEecccCCch------hheEeecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCc
Confidence 9999999999999999999862 122222334566666664 344578889999999987643211100
Q ss_pred -CCCCceeeeeecCCCcccccC-cceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHh
Q 009993 401 -TSGKRVSRVIEVEPPQRMLHG-FECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRA 460 (520)
Q Consensus 401 -~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~ 460 (520)
..............+..+.+| +...-.++--+.+.++|-...|.+.+||+-....++...
T Consensus 341 ~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g 402 (735)
T KOG0308|consen 341 FSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG 402 (735)
T ss_pred ccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence 000000000000111122222 222222333344599999999999999998887776654
No 89
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-25 Score=212.64 Aligned_cols=264 Identities=23% Similarity=0.309 Sum_probs=214.2
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCc
Q 009993 148 VFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSE 225 (520)
Q Consensus 148 l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~ 225 (520)
++|+ ..+.|+.|. ...|++|+..++........+...|+++. ++|.+|++|..+|.|.|||..+.
T Consensus 183 ldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~----------- 249 (484)
T KOG0305|consen 183 LDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ----------- 249 (484)
T ss_pred hhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc-----------
Confidence 4565 345666664 56799999999986555554466676665 88999999999999999998664
Q ss_pred cccceEEecc-CCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEE-ee-eccCEEEEe--eCCCEEEEEc-CCeEEE
Q 009993 226 KQNTQFRLWE-HEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKV-LR-HSDWVYGLA--PHDTTVASTS-GSDVYI 299 (520)
Q Consensus 226 ~~~~~~~~~~-h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i 299 (520)
.....+.+ |...|-+++|++..+.+|+.|+.|..+|++..+.... +. |...|..+. +++.++++|+ |+.+.|
T Consensus 250 --k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~I 327 (484)
T KOG0305|consen 250 --KKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFI 327 (484)
T ss_pred --cccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEe
Confidence 34555666 9999999999999999999999999999998776555 44 889999888 8999999999 999999
Q ss_pred EECCCCeeeEEeecccccceEEEEecC-CCCEEEEE--eCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCE
Q 009993 300 WDTNSGCLLTVVNGAHVGNTKSLARSH-TGDFLFTG--GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPW 376 (520)
Q Consensus 300 wd~~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~tg--~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 376 (520)
||.....++..+. .|...|.+++|+| ...+||+| +.|++|++||..++ ..+... ...+.|..|.|++.+
T Consensus 328 wd~~~~~p~~~~~-~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g------~~i~~v-dtgsQVcsL~Wsk~~ 399 (484)
T KOG0305|consen 328 WDGLSPEPKFTFT-EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG------ARIDSV-DTGSQVCSLIWSKKY 399 (484)
T ss_pred ccCCCccccEEEe-ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC------cEeccc-ccCCceeeEEEcCCC
Confidence 9998888888887 6999999999999 56688875 45999999999988 445444 345689999998743
Q ss_pred --EEEE--eCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC--CEEEEecCCCeEEEEeC
Q 009993 377 --LVSA--AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGIVRIWNF 450 (520)
Q Consensus 377 --l~s~--s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~v~iwd~ 450 (520)
|+++ ..++.|.||+..+ ......+.+|...|+.++.++ ..+++|+.|.++++|++
T Consensus 400 kEi~sthG~s~n~i~lw~~ps-------------------~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 400 KELLSTHGYSENQITLWKYPS-------------------MKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred CEEEEecCCCCCcEEEEeccc-------------------cceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 5543 3578999999987 344556788998888777655 49999999999999999
Q ss_pred Cch
Q 009993 451 SQA 453 (520)
Q Consensus 451 ~~~ 453 (520)
-+.
T Consensus 461 f~~ 463 (484)
T KOG0305|consen 461 FDE 463 (484)
T ss_pred cCC
Confidence 875
No 90
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=2.1e-24 Score=212.11 Aligned_cols=242 Identities=19% Similarity=0.236 Sum_probs=183.8
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEE-------------EEeCCCCceEEEEe--c-CCCEEEEEeCCC
Q 009993 141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI-------------ASSKPLGCTIRAVA--A-DKKLLVAGGTDG 204 (520)
Q Consensus 141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~-------------~~~~~~~~~v~~~~--~-~~~~l~sg~~dg 204 (520)
|-..|.....++++..+++++.+.....|+...+..+ ..+.+|...|.++. | ++++|++|+.||
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 3445566666777777788888887788876544322 13567888888776 6 778999999999
Q ss_pred cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc---CCEEEEEecCCeEEEEECCCCcEEEEee-eccCEE
Q 009993 205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD---LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVY 280 (520)
Q Consensus 205 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~ 280 (520)
+|++||+.++... .........+.+|...|.+++|+ +++|++|+.|++|++||+++++.+..+. |...|.
T Consensus 99 tIkIWdi~~~~~~------~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~ 172 (493)
T PTZ00421 99 TIMGWGIPEEGLT------QNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQIT 172 (493)
T ss_pred EEEEEecCCCccc------cccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE
Confidence 9999998764210 01123456788999999999994 3689999999999999999999888887 888999
Q ss_pred EEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccc-eEEEEecCCCCEEEEEe----CCCeEEEEEcccCcccc
Q 009993 281 GLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGN-TKSLARSHTGDFLFTGG----EDGAIHMYEIINDCTEA 352 (520)
Q Consensus 281 ~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~-i~~l~~s~~~~~l~tg~----~dg~i~iwd~~~~~~~~ 352 (520)
+++ +++.++++++ |+.|++||+++++.+..+. +|.+. +..+.|.+++..+++++ .|+.|++||+++..
T Consensus 173 sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~--- 248 (493)
T PTZ00421 173 SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA--- 248 (493)
T ss_pred EEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe-cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC---
Confidence 887 7899999999 9999999999999888876 57654 45678889888877654 47999999998763
Q ss_pred ceeeeeeecCC-cCCEEEEEecC--CEEEEEe-CCCcEEEEeCCcc
Q 009993 353 NVLLVATWIPH-TGPVNSLAFEF--PWLVSAA-GDGKLSLIDVRKL 394 (520)
Q Consensus 353 ~~~~~~~~~~h-~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~~~~ 394 (520)
.++.....+ ...+....|++ ++|++|+ .|+.|++||+.++
T Consensus 249 --~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 249 --SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred --CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 233333333 33455555654 6788777 5999999999875
No 91
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=1.9e-25 Score=215.61 Aligned_cols=352 Identities=18% Similarity=0.266 Sum_probs=248.9
Q ss_pred CCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCC-
Q 009993 123 AGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKK- 195 (520)
Q Consensus 123 ~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~- 195 (520)
+....-++|+ +++.+++++.+.|+++.=+|-=..++.|..+|+|.++++..++.+.+++...+.|+.++ .||+
T Consensus 179 s~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p 258 (910)
T KOG1539|consen 179 SSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNP 258 (910)
T ss_pred ecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCe
Confidence 4445557887 77999999999999999999889999999999999999999999999987678888887 5566
Q ss_pred EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCc----E
Q 009993 196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLK----C 269 (520)
Q Consensus 196 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~----~ 269 (520)
.+++|+..|.+.+||++.... .......|.+.|....| ....+++++.|..+++|=.+++. .
T Consensus 259 ~las~~~~G~m~~wDLe~kkl------------~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~ 326 (910)
T KOG1539|consen 259 LLASGRSNGDMAFWDLEKKKL------------INVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRL 326 (910)
T ss_pred eEEeccCCceEEEEEcCCCee------------eeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchh
Confidence 667778889999999976531 12222345566666555 23456666666666655333221 1
Q ss_pred EEEee-ecc-------------------------------------------------------------CEEEEee---
Q 009993 270 LKVLR-HSD-------------------------------------------------------------WVYGLAP--- 284 (520)
Q Consensus 270 ~~~~~-~~~-------------------------------------------------------------~v~~~~~--- 284 (520)
++.-. |.. +|..++.
T Consensus 327 LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~ 406 (910)
T KOG1539|consen 327 LRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENA 406 (910)
T ss_pred eeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccc
Confidence 11100 211 2222221
Q ss_pred ----CCCEEEEEc--CCeEEEEECCCCee-eEEeecc----cccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccc
Q 009993 285 ----HDTTVASTS--GSDVYIWDTNSGCL-LTVVNGA----HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN 353 (520)
Q Consensus 285 ----~~~~l~~~~--d~~i~iwd~~~~~~-~~~~~~~----~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~ 353 (520)
..+ ++++. +..++.|+.++... ...+... ....+++++.++.|++.+.|+..|.|-+|++..+
T Consensus 407 RE~~W~N-v~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG----- 480 (910)
T KOG1539|consen 407 REKEWDN-VITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG----- 480 (910)
T ss_pred hhhhhcc-eeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC-----
Confidence 112 33333 56678888776554 2333211 3467899999999999999999999999999999
Q ss_pred eeeeeee---cCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceee--------------------
Q 009993 354 VLLVATW---IPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSR-------------------- 408 (520)
Q Consensus 354 ~~~~~~~---~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-------------------- 408 (520)
.....+ ..|.++|++++.+. +.+++++.+|.+++||..+.........+.....
T Consensus 481 -i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~ 559 (910)
T KOG1539|consen 481 -IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIR 559 (910)
T ss_pred -eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEE
Confidence 555566 48999999999986 6899999999999999998764443333322111
Q ss_pred eeec--CCCcccccCcceeeEEEEecC--CEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccC
Q 009993 409 VIEV--EPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSK 484 (520)
Q Consensus 409 ~~~~--~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 484 (520)
+... ....+.+.||+..+.+++|++ ++|++++.|++||+||+.++..+.-..-. .....+.|||+
T Consensus 560 vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd-----------~~~~sls~SPn 628 (910)
T KOG1539|consen 560 VVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD-----------SPCTSLSFSPN 628 (910)
T ss_pred EEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC-----------CcceeeEECCC
Confidence 1111 123566788998888777655 49999999999999999998776543222 22468999999
Q ss_pred CCcccccccccccCCCCCCcceeeecc
Q 009993 485 GGRTDQCSVAAKKNPMNGNRRSVWHNK 511 (520)
Q Consensus 485 g~~~~~~s~~~~~~~~~~~~~~~~~~~ 511 (520)
|..+|++.+ +.....+|.|+
T Consensus 629 gD~LAT~Hv-------d~~gIylWsNk 648 (910)
T KOG1539|consen 629 GDFLATVHV-------DQNGIYLWSNK 648 (910)
T ss_pred CCEEEEEEe-------cCceEEEEEch
Confidence 999999987 44556788876
No 92
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=1.4e-24 Score=183.14 Aligned_cols=277 Identities=17% Similarity=0.165 Sum_probs=207.3
Q ss_pred eCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec
Q 009993 180 SKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW 255 (520)
Q Consensus 180 ~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~ 255 (520)
+++|..+++.+. .+|.+|++++.|.+..||-..+|+ .+-++.||++.|.|+.. +.+.+++|+.
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-------------rlGty~GHtGavW~~Did~~s~~liTGSA 72 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-------------RLGTYDGHTGAVWCCDIDWDSKHLITGSA 72 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-------------eeeeecCCCceEEEEEecCCcceeeeccc
Confidence 578988888876 789999999999999999875553 66788999999999998 6689999999
Q ss_pred CCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEcC------CeEEEEECC-------CCeeeEEeecccccceE
Q 009993 256 DMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTSG------SDVYIWDTN-------SGCLLTVVNGAHVGNTK 320 (520)
Q Consensus 256 dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~d------~~i~iwd~~-------~~~~~~~~~~~~~~~i~ 320 (520)
|.++++||+++|+++..+..+.+|..+. +++++++.+.| +.|.++|++ ..++...+. .+...++
T Consensus 73 D~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-t~~skit 151 (327)
T KOG0643|consen 73 DQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-TPDSKIT 151 (327)
T ss_pred cceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec-CCcccee
Confidence 9999999999999999999888888877 78888887764 459999998 445566666 3778999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccC
Q 009993 321 SLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSG 398 (520)
Q Consensus 321 ~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~ 398 (520)
.+-|.|-+++|++|.+||.|.+||++++. ..+..-..|...|+.+.+++ .++++++.|.+-++||+.+.....
T Consensus 152 ~a~Wg~l~~~ii~Ghe~G~is~~da~~g~-----~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~K 226 (327)
T KOG0643|consen 152 SALWGPLGETIIAGHEDGSISIYDARTGK-----ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLK 226 (327)
T ss_pred eeeecccCCEEEEecCCCcEEEEEcccCc-----eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEE
Confidence 99999999999999999999999999984 45666678999999999976 699999999999999999863332
Q ss_pred CCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCe--EEEEeCCchHhHHHHhhh--hcccccchhhhh
Q 009993 399 RPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGI--VRIWNFSQAFEIERRARA--LRGIRLENRMRR 474 (520)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~--v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~ 474 (520)
... ........++.|..+.++.||.-.. |--=+.+.++.-.+.... .+.+...+.+--
T Consensus 227 ty~------------------te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG 288 (327)
T KOG0643|consen 227 TYT------------------TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG 288 (327)
T ss_pred Eee------------------ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc
Confidence 111 1112233344454455555553222 222222233222222111 112222334445
Q ss_pred ccceeeeccCCCccccccc
Q 009993 475 RKLQTEMSSKGGRTDQCSV 493 (520)
Q Consensus 475 ~~~~~~~s~~g~~~~~~s~ 493 (520)
....++|+|||+..++..-
T Consensus 289 PINsvAfhPdGksYsSGGE 307 (327)
T KOG0643|consen 289 PINSVAFHPDGKSYSSGGE 307 (327)
T ss_pred CcceeEECCCCcccccCCC
Confidence 5789999999998877653
No 93
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.6e-25 Score=188.07 Aligned_cols=267 Identities=13% Similarity=0.176 Sum_probs=215.8
Q ss_pred EEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEE
Q 009993 178 ASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYS 252 (520)
Q Consensus 178 ~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s 252 (520)
+.+++|...+.++. .+|..|++|+.|+++.+|++.... ........+|.+.|-.++| +++.+++
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r-----------~~~~~~~~gh~~svdql~w~~~~~d~~at 82 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR-----------FRKELVYRGHTDSVDQLCWDPKHPDLFAT 82 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchh-----------hhhhhcccCCCcchhhheeCCCCCcceEE
Confidence 34556766676665 889999999999999999986542 2234456789999999999 5688999
Q ss_pred EecCCeEEEEECCCCcEEEEee--eccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCC
Q 009993 253 GSWDMTVRVWDRALLKCLKVLR--HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD 329 (520)
Q Consensus 253 ~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~ 329 (520)
++.|.+|++||++++++...+. ...-..+.+|+|.++++++ |..|.+.|.++.+.+.... ....+..++|+.+++
T Consensus 83 as~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~--~~~e~ne~~w~~~nd 160 (313)
T KOG1407|consen 83 ASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ--FKFEVNEISWNNSND 160 (313)
T ss_pred ecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc--ccceeeeeeecCCCC
Confidence 9999999999999999999887 3333445569999999999 9999999999988877664 566788899998888
Q ss_pred EEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCcee
Q 009993 330 FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVS 407 (520)
Q Consensus 330 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 407 (520)
+++.....|+|.|.....- +++.++..|.....||.|+| +++++|+.|-.+.+||+...
T Consensus 161 ~Fflt~GlG~v~ILsypsL------kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL------------- 221 (313)
T KOG1407|consen 161 LFFLTNGLGCVEILSYPSL------KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL------------- 221 (313)
T ss_pred EEEEecCCceEEEEecccc------ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh-------------
Confidence 8888878899999998866 88999999999999999987 79999999999999999873
Q ss_pred eeeecCCCcccccCcceeeEEEEe--cCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCC
Q 009993 408 RVIEVEPPQRMLHGFECNLLSVDI--GADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKG 485 (520)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 485 (520)
.+.+.+..+.-+|..++| ++++||+|++|..|-|=++++|..+.+.... .....++|+|+-
T Consensus 222 ------iC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~-----------~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 222 ------ICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCE-----------GPTFTVAWHPKR 284 (313)
T ss_pred ------hhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeecc-----------CCceeEEecCCC
Confidence 344555556655655555 5669999999999999999999876553222 224688999988
Q ss_pred Cccccccc
Q 009993 486 GRTDQCSV 493 (520)
Q Consensus 486 ~~~~~~s~ 493 (520)
..||-+.-
T Consensus 285 ~LLAyA~d 292 (313)
T KOG1407|consen 285 PLLAYACD 292 (313)
T ss_pred ceeeEEec
Confidence 87776543
No 94
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=5.3e-24 Score=210.14 Aligned_cols=224 Identities=16% Similarity=0.170 Sum_probs=172.9
Q ss_pred EeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cC-CCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccC
Q 009993 160 SGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--AD-KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH 236 (520)
Q Consensus 160 gs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h 236 (520)
|+.++.|++|+......+..+.+|...|.++. |+ +.+|++|+.||+|++||+.++..... ........+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-----~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-----EIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-----ccccceEEeecC
Confidence 66789999999988888889999999998876 54 78999999999999999976421100 001234467899
Q ss_pred CCCeEEEEEcC--C-EEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEE
Q 009993 237 EGPITSLALDL--T-RIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTV 310 (520)
Q Consensus 237 ~~~v~~l~~~~--~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~ 310 (520)
...|.+++|++ . .+++++.|++|++||+++++.+..+.+...|.+++ ++|.+|++++ |+.|+|||+++++.+..
T Consensus 125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t 204 (568)
T PTZ00420 125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS 204 (568)
T ss_pred CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE
Confidence 99999999944 4 46799999999999999998888777778898887 7899999888 99999999999999888
Q ss_pred eecccccceEE-----EEecCCCCEEEEEeCCC----eEEEEEcccCccccceeeeeee--cCCcCCEEEEEec--CCEE
Q 009993 311 VNGAHVGNTKS-----LARSHTGDFLFTGGEDG----AIHMYEIINDCTEANVLLVATW--IPHTGPVNSLAFE--FPWL 377 (520)
Q Consensus 311 ~~~~~~~~i~~-----l~~s~~~~~l~tg~~dg----~i~iwd~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~--~~~l 377 (520)
+. +|.+.+.+ ..|++++.+|++++.|+ .|+|||++... .++... ..+.+.+...... +.++
T Consensus 205 l~-gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~-----~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 205 FH-IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT-----SALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred Ee-cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC-----CceEEEEecCCccceEEeeeCCCCCEE
Confidence 86 68775433 33568889999988774 79999999642 233333 3333333333222 3588
Q ss_pred EEEeCCCcEEEEeCCcc
Q 009993 378 VSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 378 ~s~s~dg~i~vwd~~~~ 394 (520)
++|+.|+.|++|++...
T Consensus 279 lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEECCCeEEEEEccCC
Confidence 99999999999999764
No 95
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.5e-25 Score=186.52 Aligned_cols=248 Identities=17% Similarity=0.186 Sum_probs=192.5
Q ss_pred hhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC---cEEEEeCCCCceEEEEe----cCCCEEEEEeCCCcEEEE
Q 009993 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG---FSIASSKPLGCTIRAVA----ADKKLLVAGGTDGFIHCW 209 (520)
Q Consensus 137 ~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~----~~~~~l~sg~~dg~i~vw 209 (520)
+-.+|.+.|..+.....|+.|+|++.|++|+|+.+.++ ..+.++.+|..+|..+. .-|.+|++++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 34689999999988888999999999999999999765 46788999999999877 368999999999999999
Q ss_pred EcccCcceeeeccCCccccceEEeccCCCCeEEEEE----cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEeeC
Q 009993 210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPH 285 (520)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~ 285 (520)
.-.++. .........|...|++++| -|-.|++++.||.|.+.+.++..
T Consensus 86 ke~~g~-----------w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g----------------- 137 (299)
T KOG1332|consen 86 KEENGR-----------WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG----------------- 137 (299)
T ss_pred ecCCCc-----------hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC-----------------
Confidence 976653 3455566789999999999 33568999999999998876420
Q ss_pred CCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCC---C-----------CEEEEEeCCCeEEEEEcccCccc
Q 009993 286 DTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT---G-----------DFLFTGGEDGAIHMYEIINDCTE 351 (520)
Q Consensus 286 ~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~---~-----------~~l~tg~~dg~i~iwd~~~~~~~ 351 (520)
+-....+...|.-.|++++|.|. | +.|++|+.|..|+||+...+.
T Consensus 138 -------------------~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~-- 196 (299)
T KOG1332|consen 138 -------------------GWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS-- 196 (299)
T ss_pred -------------------CccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc--
Confidence 11111222357778888888774 3 569999999999999998862
Q ss_pred cceeeeeeecCCcCCEEEEEecC------CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCccee
Q 009993 352 ANVLLVATWIPHTGPVNSLAFEF------PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECN 425 (520)
Q Consensus 352 ~~~~~~~~~~~h~~~v~~l~~~~------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (520)
...-.++.+|.+.|+.++|.| .+|++++.||+|.||..+...... ....++.....
T Consensus 197 --w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w----------------k~tll~~f~~~ 258 (299)
T KOG1332|consen 197 --WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW----------------KKTLLEEFPDV 258 (299)
T ss_pred --hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc----------------cccccccCCcc
Confidence 244556899999999999977 489999999999999887432111 11223334444
Q ss_pred eEE--EEecCCEEEEecCCCeEEEEeCC
Q 009993 426 LLS--VDIGADRIVCGGEEGIVRIWNFS 451 (520)
Q Consensus 426 v~~--~~~~~~~l~sg~~Dg~v~iwd~~ 451 (520)
++. +++.++.|+.++.|..|.+|.-.
T Consensus 259 ~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 259 VWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred eEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 554 44567799999999999999754
No 96
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=9.3e-25 Score=197.57 Aligned_cols=256 Identities=19% Similarity=0.260 Sum_probs=194.2
Q ss_pred CCceEEEEe---cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecC
Q 009993 183 LGCTIRAVA---ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWD 256 (520)
Q Consensus 183 ~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~d 256 (520)
|...|.... .+...+++++..+.|.|||..+.....- ......+..++.+|...-.+++| ....+++++.|
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~---~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPK---ASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccc---ccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 444444333 5667888899999999999865421110 00123456688899998888999 44789999999
Q ss_pred CeEEEEECCCCcE-------EEEee-eccCEEEEe---eCCCEEEEEc-CCeEEEEECCC--CeeeEEeecccccceEEE
Q 009993 257 MTVRVWDRALLKC-------LKVLR-HSDWVYGLA---PHDTTVASTS-GSDVYIWDTNS--GCLLTVVNGAHVGNTKSL 322 (520)
Q Consensus 257 g~v~iwd~~~~~~-------~~~~~-~~~~v~~~~---~~~~~l~~~~-d~~i~iwd~~~--~~~~~~~~~~~~~~i~~l 322 (520)
++|.+||+..... ...+. |.+.|..++ .+..++++++ |+.+.|||+++ .++..... +|.+.++|+
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~-ah~~~vn~~ 278 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK-AHSAEVNCV 278 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc-ccCCceeEE
Confidence 9999999975432 22233 888898888 5667777777 89999999995 44444444 799999999
Q ss_pred EecC-CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcccccC
Q 009993 323 ARSH-TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSG 398 (520)
Q Consensus 323 ~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~ 398 (520)
+|+| ++..||||+.|++|.+||+|+.. .++.++.+|...|.+|.|+| ..|++++.|+.+.|||+..-....
T Consensus 279 ~fnp~~~~ilAT~S~D~tV~LwDlRnL~-----~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 279 AFNPFNEFILATGSADKTVALWDLRNLN-----KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred EeCCCCCceEEeccCCCcEEEeechhcc-----cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 9999 55678899999999999999986 57899999999999999998 599999999999999998643332
Q ss_pred CCCCCCceeeeeecCCCcccccCcceeeEEEEecCC---EEEEecCCCeEEEEeCCc
Q 009993 399 RPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD---RIVCGGEEGIVRIWNFSQ 452 (520)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~sg~~Dg~v~iwd~~~ 452 (520)
....... ....+..+-.||...|..++|++. .|++.++|+.+.||+...
T Consensus 354 ~~eda~d-----gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 354 SPEDAED-----GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred Chhhhcc-----CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 2111110 112223445689999999999887 899999999999999873
No 97
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.2e-25 Score=197.28 Aligned_cols=277 Identities=18% Similarity=0.259 Sum_probs=218.1
Q ss_pred EEeCCCCceEEEEe--cCC-CEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEe
Q 009993 178 ASSKPLGCTIRAVA--ADK-KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS 254 (520)
Q Consensus 178 ~~~~~~~~~v~~~~--~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s 254 (520)
..+.+|...|.+++ |.. ..+++|+.||.|++||+.+. .+...+..|.+.|..|+++...+++++
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR-------------~~~~~f~AH~G~V~Gi~v~~~~~~tvg 126 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR-------------ECIRTFKAHEGLVRGICVTQTSFFTVG 126 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhh-------------hhhheeecccCceeeEEecccceEEec
Confidence 34567888888887 433 56899999999999998663 467788999999999999889999999
Q ss_pred cCCeEEEEECCCCcEEEEeeeccCEEEEee-CCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCC-CEEE
Q 009993 255 WDMTVRVWDRALLKCLKVLRHSDWVYGLAP-HDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG-DFLF 332 (520)
Q Consensus 255 ~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~ 332 (520)
.|.+|+.|-+.. ..++++-....+..++. ...-+++.++..|.|||.....++..+.. ....|.++.|+|.. ..|+
T Consensus 127 dDKtvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smsw-G~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 127 DDKTVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSW-GADSISSVKFNPVETSILA 204 (433)
T ss_pred CCcceeeeeccC-CcceeeeccccccccccccccccccccCceeeecccccCCccceeec-CCCceeEEecCCCcchhee
Confidence 999999999865 46677767777777873 33344445567899999999999988875 45678999999965 4677
Q ss_pred EEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeee
Q 009993 333 TGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVI 410 (520)
Q Consensus 333 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 410 (520)
+|++|+.|.+||++... ++....- ...-+.|+|+| -.+++|+.|..++.+|++..
T Consensus 205 s~~sDrsIvLyD~R~~~------Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l---------------- 261 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQAS------PLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNL---------------- 261 (433)
T ss_pred eeccCCceEEEecccCC------ccceeee-eccccceecCccccceeeccccccceehhhhhh----------------
Confidence 78899999999999994 3333211 23457899998 47889999999999999986
Q ss_pred ecCCCcccccCcceeeEEEEecCC--EEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcc
Q 009993 411 EVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRT 488 (520)
Q Consensus 411 ~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~ 488 (520)
..+..+..+|...|+++++++. -+++||.|.+||||.+..+..-.. ...+.-..+.++.||-|.+.+
T Consensus 262 --~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdi---------YhtkRMq~V~~Vk~S~Dskyi 330 (433)
T KOG0268|consen 262 --SRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDI---------YHTKRMQHVFCVKYSMDSKYI 330 (433)
T ss_pred --cccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhh---------hhHhhhheeeEEEEeccccEE
Confidence 6667778899999999998765 999999999999999987643222 222333468899999999999
Q ss_pred cccccccccCCCCCCcceeeecc
Q 009993 489 DQCSVAAKKNPMNGNRRSVWHNK 511 (520)
Q Consensus 489 ~~~s~~~~~~~~~~~~~~~~~~~ 511 (520)
.+.|- -....+|..+
T Consensus 331 ~SGSd--------d~nvRlWka~ 345 (433)
T KOG0268|consen 331 ISGSD--------DGNVRLWKAK 345 (433)
T ss_pred EecCC--------Ccceeeeecc
Confidence 99884 3334678764
No 98
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=5.7e-25 Score=208.25 Aligned_cols=245 Identities=21% Similarity=0.320 Sum_probs=203.9
Q ss_pred CCCCCCcccHHHh------hhhhccccccEEE-EEEcc-CCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe-c
Q 009993 122 GAGFSDDKSWKEL------IDVLYGHTEAVLT-VFVLA-SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-A 192 (520)
Q Consensus 122 ~~~~~~~~~W~~~------~~~l~~h~~~V~~-l~~~~-~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~-~ 192 (520)
.+.+...++|++. .+.+++|.+-|.+ +++.+ ++-.+++|+.|++|.+|.+....++..+.+|...|.+++ .
T Consensus 31 ~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~ 110 (745)
T KOG0301|consen 31 GSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIG 110 (745)
T ss_pred cCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecC
Confidence 3445556889853 4567888888888 88875 455699999999999999999999999999999999999 3
Q ss_pred CCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEE
Q 009993 193 DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLK 271 (520)
Q Consensus 193 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~ 271 (520)
....+++||.|.++++|.... ....+.+|+..|.++.. ..+.++|||.|++|++|.- +++++
T Consensus 111 ~~~~~iSgSWD~TakvW~~~~---------------l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~ 173 (745)
T KOG0301|consen 111 EDGTLISGSWDSTAKVWRIGE---------------LVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLK 173 (745)
T ss_pred CcCceEecccccceEEecchh---------------hhcccCCcchheeeeeecCCCcEEeccCcceeeeccC--Cchhh
Confidence 334489999999999998643 34458899999999998 5569999999999999985 77888
Q ss_pred Eee-eccCEEEEe-eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993 272 VLR-HSDWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND 348 (520)
Q Consensus 272 ~~~-~~~~v~~~~-~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~ 348 (520)
++. |.+.|..+. .++..+++++ ||.|++|++ +|+.+.++. +|..-++++...+++..++++++|++++||+..
T Consensus 174 tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~-ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-- 249 (745)
T KOG0301|consen 174 TFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMH-GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-- 249 (745)
T ss_pred hhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeee-ccceEEEEEEecCCCCeEEEecCCceEEEeecC--
Confidence 887 999999999 5555566666 999999999 777787776 799999999988889999999999999999976
Q ss_pred ccccceeeeeeecCCcCCEEEEEe-cCCEEEEEeCCCcEEEEeCCc
Q 009993 349 CTEANVLLVATWIPHTGPVNSLAF-EFPWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 349 ~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~vwd~~~ 393 (520)
.+.+.+.-....|+++.+ ...-+++|+.||.|+||....
T Consensus 250 ------e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 250 ------ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred ------ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 245555445557888887 467899999999999998874
No 99
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.9e-24 Score=194.02 Aligned_cols=245 Identities=19% Similarity=0.234 Sum_probs=208.2
Q ss_pred HHhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEE
Q 009993 132 KELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCW 209 (520)
Q Consensus 132 ~~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vw 209 (520)
++++.+|+||...|+.+.|+|+...+++++.|..|+||.............|..+|+.++ +.|.||++++.||+..+.
T Consensus 251 ~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fs 330 (506)
T KOG0289|consen 251 NQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFS 330 (506)
T ss_pred hhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEE
Confidence 378999999999999999999999999999999999999998888888899999999887 999999999999999999
Q ss_pred EcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--e
Q 009993 210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--P 284 (520)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~ 284 (520)
|++++... ....-....-.+++.+| ||..+.+|..||.|+|||+.++..+..|. |.++|..++ .
T Consensus 331 d~~~g~~l-----------t~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsE 399 (506)
T KOG0289|consen 331 DISSGSQL-----------TVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSE 399 (506)
T ss_pred EccCCcEE-----------EEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEecc
Confidence 99887421 11111122345888899 77889999999999999999998888887 999999988 7
Q ss_pred CCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCC
Q 009993 285 HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH 363 (520)
Q Consensus 285 ~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h 363 (520)
+|.+++++. |+.|++||++..+...++.......+.++.|.+.|.+|+.++.|=.|++++-.+. ++..+..+..|
T Consensus 400 NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k----~W~~~~~~~~~ 475 (506)
T KOG0289|consen 400 NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTK----SWTEIKELADH 475 (506)
T ss_pred CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccc----cceeeehhhhc
Confidence 888999998 7889999999998888887555568999999999999999988877777764433 23678888889
Q ss_pred cCCEEEEEecC--CEEEEEeCCCcEEEEeC
Q 009993 364 TGPVNSLAFEF--PWLVSAAGDGKLSLIDV 391 (520)
Q Consensus 364 ~~~v~~l~~~~--~~l~s~s~dg~i~vwd~ 391 (520)
.+..+++.|.. .+++++|.|..++++.+
T Consensus 476 sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 476 SGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccccceeeecccceEEeeccchhheEEeec
Confidence 99999999954 79999999999888754
No 100
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=1.2e-23 Score=207.53 Aligned_cols=215 Identities=20% Similarity=0.257 Sum_probs=161.6
Q ss_pred EeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc---CCEEEEEecCCeEEEEECCCCc--------
Q 009993 200 GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD---LTRIYSGSWDMTVRVWDRALLK-------- 268 (520)
Q Consensus 200 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~v~iwd~~~~~-------- 268 (520)
|+.++.|++|+.... .....+.+|.+.|.+++|+ +++|++|+.||+|++||+.++.
T Consensus 50 GG~~gvI~L~~~~r~-------------~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~ 116 (568)
T PTZ00420 50 GGLIGAIRLENQMRK-------------PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKD 116 (568)
T ss_pred CCceeEEEeeecCCC-------------ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccccc
Confidence 455678899986432 2566788999999999994 5789999999999999998642
Q ss_pred EEEEee-eccCEEEEe--eCCCE-EEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEE
Q 009993 269 CLKVLR-HSDWVYGLA--PHDTT-VASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY 343 (520)
Q Consensus 269 ~~~~~~-~~~~v~~~~--~~~~~-l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iw 343 (520)
.+..+. |...|.++. |++.. +++++ |+.|++||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|+||
T Consensus 117 p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~lLat~s~D~~IrIw 194 (568)
T PTZ00420 117 PQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGNLLSGTCVGKHMHII 194 (568)
T ss_pred ceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCCCCEEEEEecCCEEEEE
Confidence 223344 888999888 66655 46767 9999999999998877764 66789999999999999999999999999
Q ss_pred EcccCccccceeeeeeecCCcCCEEEEE-----e--cCCEEEEEeCCC----cEEEEeCCcccccCCCCCCCceeeeeec
Q 009993 344 EIINDCTEANVLLVATWIPHTGPVNSLA-----F--EFPWLVSAAGDG----KLSLIDVRKLLRSGRPTSGKRVSRVIEV 412 (520)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~h~~~v~~l~-----~--~~~~l~s~s~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 412 (520)
|++++ ..+.++.+|.+.+.+.. | +..+|++++.|+ .|+|||+++..
T Consensus 195 D~Rsg------~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~----------------- 251 (568)
T PTZ00420 195 DPRKQ------EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT----------------- 251 (568)
T ss_pred ECCCC------cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC-----------------
Confidence 99998 66778889988654433 2 236888888764 79999998631
Q ss_pred CCCccc--ccCcceeeE-EEEe-cCCEEEEecCCCeEEEEeCCch
Q 009993 413 EPPQRM--LHGFECNLL-SVDI-GADRIVCGGEEGIVRIWNFSQA 453 (520)
Q Consensus 413 ~~~~~~--~~~~~~~v~-~~~~-~~~~l~sg~~Dg~v~iwd~~~~ 453 (520)
.+... +..+...+. .+++ ++.++++|+.|+.|++|++..+
T Consensus 252 -~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 252 -SALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred -CceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 11111 122222221 2222 2458999999999999999765
No 101
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.8e-23 Score=180.66 Aligned_cols=298 Identities=17% Similarity=0.171 Sum_probs=198.4
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcE-----EE-EeC-CCCceEEEEecCCCEE-EEEeCCCcE
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS-----IA-SSK-PLGCTIRAVAADKKLL-VAGGTDGFI 206 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~-----~~-~~~-~~~~~v~~~~~~~~~l-~sg~~dg~i 206 (520)
..+|+||.+.|++++|+.||++|+|++.|++|++|++..... ++ ..+ +| .....|+||-.-+ ++.....++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dh-pT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDH-PTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCC-ceEEEECCCcceEEEEEccCCEE
Confidence 678999999999999999999999999999999999976421 11 122 33 3444677776644 445556678
Q ss_pred EEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee---eccCEEE
Q 009993 207 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYG 281 (520)
Q Consensus 207 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~ 281 (520)
++|.+....--.+.... .......--..|.-.|..+-. ++.+|++++.|..|.+|+++ |+.+..+. ....-..
T Consensus 158 ~vyk~~K~~dG~~~~~~-v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHF-VHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred EEEEeeecccCCCCccc-ccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence 89876432210000000 000001112246666766666 56889999999999999998 88888876 4455566
Q ss_pred EeeCCCEEEEEc-CCeEEEEECC---CC-----eeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccc-
Q 009993 282 LAPHDTTVASTS-GSDVYIWDTN---SG-----CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE- 351 (520)
Q Consensus 282 ~~~~~~~l~~~~-d~~i~iwd~~---~~-----~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~- 351 (520)
++|+|+++++++ --.|++|.+- .| ..+..+. +|...|..++|+++...+++.+.||++++||.+-.-..
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk-GH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~ 314 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK-GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG 314 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheec-cchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecC
Confidence 789999999998 8999999873 22 2234454 79999999999999999999999999999998543111
Q ss_pred cceeeeeee----cCCcCCEEEEEecCC-EEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceee
Q 009993 352 ANVLLVATW----IPHTGPVNSLAFEFP-WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNL 426 (520)
Q Consensus 352 ~~~~~~~~~----~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 426 (520)
+.++.+.+. ....+....+..+|+ .+++.+....++++..+++.. .+.....++.....
T Consensus 315 qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~----------------~~~~e~~h~~~Is~ 378 (420)
T KOG2096|consen 315 QDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKD----------------YPELEDIHSTTISS 378 (420)
T ss_pred CCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCcc----------------chhHHHhhcCceee
Confidence 111222222 122233346777772 444555566899999887521 22233334444555
Q ss_pred EEEEecCCEEEEecCCCeEEEEeCCch
Q 009993 427 LSVDIGADRIVCGGEEGIVRIWNFSQA 453 (520)
Q Consensus 427 ~~~~~~~~~l~sg~~Dg~v~iwd~~~~ 453 (520)
.+++++|.+++|+| |..+++..-..+
T Consensus 379 is~~~~g~~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 379 ISYSSDGKYIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred EEecCCCcEEeeec-ceeeeeecCCCc
Confidence 55555667999988 577888874433
No 102
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.9e-24 Score=195.47 Aligned_cols=238 Identities=22% Similarity=0.253 Sum_probs=194.5
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcc
Q 009993 139 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLP 216 (520)
Q Consensus 139 ~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~ 216 (520)
++|.+.|.+++.++||++|++|+.|..|.||+.++.+.+..+.+|...|.++. ...+.+++++.|+.|++|++...
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~-- 276 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL-- 276 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh--
Confidence 48999999999999999999999999999999999999999999999999887 55668999999999999998653
Q ss_pred eeeeccCCccccceEEeccCCCCeEEEEE-cCCEE-EEEecCCeEEEEECCCCcEEEEeeeccCEEEEe-eCCCEEEEEc
Q 009993 217 HLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRI-YSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA-PHDTTVASTS 293 (520)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~ 293 (520)
..+.++.+|.+.|.+|.. +-..+ -+|+.|+++++|++.....+....+.+.+-|++ .+...+++|+
T Consensus 277 -----------s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGS 345 (479)
T KOG0299|consen 277 -----------SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGS 345 (479)
T ss_pred -----------HHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeecc
Confidence 456678899999999998 44444 455599999999995544444445888899998 7888999999
Q ss_pred -CCeEEEEECCCCeeeEEeecccc-----------cceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec
Q 009993 294 -GSDVYIWDTNSGCLLTVVNGAHV-----------GNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI 361 (520)
Q Consensus 294 -d~~i~iwd~~~~~~~~~~~~~~~-----------~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 361 (520)
+|.|.+|++-+.+++.....+|. ..|++++..|..+++++|+.+|.|++|-+..+.. .+.++..+.
T Consensus 346 dnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r--~i~~l~~ls 423 (479)
T KOG0299|consen 346 DNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR--AINLLYSLS 423 (479)
T ss_pred CCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc--ccceeeecc
Confidence 89999999999999888765552 2789999999999999999999999999988843 223444443
Q ss_pred CCcCCEEEEEec--CCEEEEE-eCCCcEEEEeCC
Q 009993 362 PHTGPVNSLAFE--FPWLVSA-AGDGKLSLIDVR 392 (520)
Q Consensus 362 ~h~~~v~~l~~~--~~~l~s~-s~dg~i~vwd~~ 392 (520)
-.+.|++++|+ +..+++| +....+--|-..
T Consensus 424 -~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 424 -LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred -cccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence 56789999985 4544444 556666555544
No 103
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.7e-25 Score=212.00 Aligned_cols=285 Identities=18% Similarity=0.220 Sum_probs=214.0
Q ss_pred hhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc----EEEEeCCCCceEE---EE---ecCCCEEEEEeCCCcE
Q 009993 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF----SIASSKPLGCTIR---AV---AADKKLLVAGGTDGFI 206 (520)
Q Consensus 137 ~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~----~~~~~~~~~~~v~---~~---~~~~~~l~sg~~dg~i 206 (520)
.++++. .++..+++-..++.++. ..++|+.+.... +...+......-. .+ ....++|+|++..|.|
T Consensus 37 ~~k~~~---nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i 112 (839)
T KOG0269|consen 37 KLKAKA---NAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVI 112 (839)
T ss_pred eccccc---ceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcE
Confidence 345554 45556788777877764 457787765431 1122222111111 11 2567899999999999
Q ss_pred EEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEE
Q 009993 207 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGL 282 (520)
Q Consensus 207 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~ 282 (520)
.+||+... ........+..|+..+.++.| .+++|++||.||+|++||++..+...++. ....|..+
T Consensus 113 ~vWdlnk~----------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV 182 (839)
T KOG0269|consen 113 SVWDLNKS----------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDV 182 (839)
T ss_pred EEEecCcc----------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhce
Confidence 99998652 113345567889999999999 67999999999999999999888877776 56677777
Q ss_pred e---eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeee
Q 009993 283 A---PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA 358 (520)
Q Consensus 283 ~---~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~ 358 (520)
. ..+..++++. .|.+.+||++....-.....+|.++|.++.|+|++.+||||+.|+.|+|||+.+... .+..
T Consensus 183 ~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~----~~~~ 258 (839)
T KOG0269|consen 183 KFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA----KPKH 258 (839)
T ss_pred eeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc----ccee
Confidence 6 4577888888 699999999986543333348999999999999999999999999999999987643 2333
Q ss_pred eecCCcCCEEEEEecC---CEEEEEeC--CCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC
Q 009993 359 TWIPHTGPVNSLAFEF---PWLVSAAG--DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA 433 (520)
Q Consensus 359 ~~~~h~~~v~~l~~~~---~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 433 (520)
++ ....+|.++.|-| .+|++++. |-.|+|||++.+ .-+..++..|...+..+.|.+
T Consensus 259 tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP------------------YIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 259 TI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP------------------YIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred EE-eecceeeeeeeccCccchhhhhhccccceEEEEeeccc------------------cccceeeeccCccccceeccC
Confidence 33 2356899999976 57888764 789999999976 556677888999999999876
Q ss_pred C---EEEEecCCCeEEEEeCCchHhHHH
Q 009993 434 D---RIVCGGEEGIVRIWNFSQAFEIER 458 (520)
Q Consensus 434 ~---~l~sg~~Dg~v~iwd~~~~~~~~~ 458 (520)
. .+.+++.||+|..-.++++.....
T Consensus 320 ~d~~~l~s~sKD~tv~qh~~knat~pid 347 (839)
T KOG0269|consen 320 GDRINLWSCSKDGTVLQHLFKNATTPID 347 (839)
T ss_pred CCceeeEeecCccHHHHhhhhcccChhh
Confidence 3 899999999998877777655444
No 104
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=2.8e-24 Score=194.51 Aligned_cols=248 Identities=17% Similarity=0.152 Sum_probs=196.0
Q ss_pred ccccccEEEEEEccCC-CEEEEEeCCCeEEEEECCCCcE----------EEEeCCCCceEEEEe---cCCCEEEEEeCCC
Q 009993 139 YGHTEAVLTVFVLASA-KLLFTSGYDSIVRMWHLEDGFS----------IASSKPLGCTIRAVA---ADKKLLVAGGTDG 204 (520)
Q Consensus 139 ~~h~~~V~~l~~~~~~-~~l~sgs~dg~v~vwd~~~~~~----------~~~~~~~~~~v~~~~---~~~~~l~sg~~dg 204 (520)
--|.+.|..+.+.|.. .++++++..+.|.|||..+... -..+.+|...-..++ .....|++|+.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 4689999999999965 5677788899999999864321 125667766444444 3455899999999
Q ss_pred cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCC--CcEEEEee-eccC
Q 009993 205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRAL--LKCLKVLR-HSDW 278 (520)
Q Consensus 205 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~--~~~~~~~~-~~~~ 278 (520)
+|.+||+...... .........+.+|...|..++| +.+.+.+++.|+.+.|||+++ .+..+... |...
T Consensus 201 ~i~lwdi~~~~~~------~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~ 274 (422)
T KOG0264|consen 201 TICLWDINAESKE------DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAE 274 (422)
T ss_pred cEEEEeccccccC------CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCc
Confidence 9999999765311 1224466778899999999999 668899999999999999995 34444443 8999
Q ss_pred EEEEe---eCCCEEEEEc-CCeEEEEECCCCe-eeEEeecccccceEEEEecCCC-CEEEEEeCCCeEEEEEcccCccc-
Q 009993 279 VYGLA---PHDTTVASTS-GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTE- 351 (520)
Q Consensus 279 v~~~~---~~~~~l~~~~-d~~i~iwd~~~~~-~~~~~~~~~~~~i~~l~~s~~~-~~l~tg~~dg~i~iwd~~~~~~~- 351 (520)
|+|++ .++..||+|+ |++|.+||+++.. ++..+. +|...|.++.|+|.. ..|++++.|+.+.|||+..-...
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e-~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE-GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc-CCCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 99998 4677888888 9999999999864 556665 799999999999965 57889999999999999654322
Q ss_pred -------cceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCc
Q 009993 352 -------ANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 352 -------~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~ 393 (520)
..+.++....||...|..+.|+| -.+++.+.|+.+.||.+..
T Consensus 354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 23355677789999999999987 4899999999999999874
No 105
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.7e-24 Score=194.04 Aligned_cols=241 Identities=19% Similarity=0.300 Sum_probs=200.2
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceee
Q 009993 142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLF 219 (520)
Q Consensus 142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 219 (520)
.++|.|++-+|+|.+|+.|+..|.+++|.+.+|..+..+.+|-..|+++. .|+.+|+||+.||.|.+|.+.+- +
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l----v 156 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL----V 156 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEee----c
Confidence 57899999999999999999999999999999999999999988888876 78999999999999999997542 2
Q ss_pred eccCCccccceEEeccCCCCeEEEEE-cC---CEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc
Q 009993 220 DISGSEKQNTQFRLWEHEGPITSLAL-DL---TRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS 293 (520)
Q Consensus 220 ~~~~~~~~~~~~~~~~h~~~v~~l~~-~~---~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~ 293 (520)
+........+...+..|+-+|+++.. .| .+++|+|.|.++++||+..+..+.++..+..+.++. |.++.+++|+
T Consensus 157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt 236 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGT 236 (476)
T ss_pred ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecC
Confidence 22222345678889999999999999 33 689999999999999999999999999999998877 8889999999
Q ss_pred -CCeEEEEECCCCe----------------eeEEeeccccc--ceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccce
Q 009993 294 -GSDVYIWDTNSGC----------------LLTVVNGAHVG--NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANV 354 (520)
Q Consensus 294 -d~~i~iwd~~~~~----------------~~~~~~~~~~~--~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~ 354 (520)
+|.|.+.++.... .+..+. +|.+ +|+|++++-||..|++|+.||.+.|||+...
T Consensus 237 ~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~-Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~------ 309 (476)
T KOG0646|consen 237 EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV-GHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK------ 309 (476)
T ss_pred CcceEEeeehhcCCcccccccccccccccceeeeec-cccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH------
Confidence 9999998875432 223333 6777 9999999999999999999999999999988
Q ss_pred eeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCc
Q 009993 355 LLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 355 ~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~ 393 (520)
.+++++....++|+.+.+.| ..+..-...-.+-.|++..
T Consensus 310 Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lkr 351 (476)
T KOG0646|consen 310 QCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLKR 351 (476)
T ss_pred HHHHHHhhhccccceeEeeccccceecccccCccCCchHhhc
Confidence 67777776788999999955 4444444445566666554
No 106
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=5e-24 Score=194.51 Aligned_cols=272 Identities=20% Similarity=0.276 Sum_probs=210.7
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC---cEEEEeC--CCCceEEE--EecCCCEEEEEeCCCcEEEEEcc
Q 009993 140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG---FSIASSK--PLGCTIRA--VAADKKLLVAGGTDGFIHCWRAV 212 (520)
Q Consensus 140 ~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~---~~~~~~~--~~~~~v~~--~~~~~~~l~sg~~dg~i~vwd~~ 212 (520)
.|..-|.++.++...++++||+. |.|+|||+... ..+..+. .....+.+ +.+||+.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 68999999999999999999985 66999999643 2333332 22344444 34999999999999999999997
Q ss_pred cCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCC
Q 009993 213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDT 287 (520)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~ 287 (520)
...+.+ ...+..-.-...+++. |.+..+++..||.|.|||+.+...++.+. |.+.+.|+. .+|.
T Consensus 496 apTpri-----------kaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGt 564 (705)
T KOG0639|consen 496 APTPRI-----------KAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGT 564 (705)
T ss_pred CCCcch-----------hhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCc
Confidence 654221 1122222233444455 77889999999999999999999999998 888888887 7899
Q ss_pred EEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCC
Q 009993 288 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP 366 (520)
Q Consensus 288 ~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 366 (520)
.|.+|+ |++|+.||++++..+.... ..+.|.++.++|++.+|++|-+++.+-|-..... ....+.-|.+.
T Consensus 565 klWTGGlDntvRcWDlregrqlqqhd--F~SQIfSLg~cP~~dWlavGMens~vevlh~skp-------~kyqlhlheSc 635 (705)
T KOG0639|consen 565 KLWTGGLDNTVRCWDLREGRQLQQHD--FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-------EKYQLHLHESC 635 (705)
T ss_pred eeecCCCccceeehhhhhhhhhhhhh--hhhhheecccCCCccceeeecccCcEEEEecCCc-------cceeecccccE
Confidence 999999 9999999999998877653 6789999999999999999999999988877655 34556679999
Q ss_pred EEEEEec--CCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCe
Q 009993 367 VNSLAFE--FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGI 444 (520)
Q Consensus 367 v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~ 444 (520)
|.++.|. ++++++.+.|+.+..|...-+...+. ...........++++.++||||+.|..
T Consensus 636 VLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFq------------------skE~SsVlsCDIS~ddkyIVTGSGdkk 697 (705)
T KOG0639|consen 636 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ------------------SKESSSVLSCDISFDDKYIVTGSGDKK 697 (705)
T ss_pred EEEEEecccCceeeecCchhhhhhccCccccceee------------------ccccCcceeeeeccCceEEEecCCCcc
Confidence 9999996 58999999999999998876533221 111122233445566779999999999
Q ss_pred EEEEeC
Q 009993 445 VRIWNF 450 (520)
Q Consensus 445 v~iwd~ 450 (520)
..||.+
T Consensus 698 ATVYeV 703 (705)
T KOG0639|consen 698 ATVYEV 703 (705)
T ss_pred eEEEEE
Confidence 888876
No 107
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=6.3e-23 Score=176.59 Aligned_cols=247 Identities=16% Similarity=0.211 Sum_probs=190.2
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC----cEEEEeCCCCceEEEEe----cCCCEEEEEeCCCcEEEEE
Q 009993 139 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG----FSIASSKPLGCTIRAVA----ADKKLLVAGGTDGFIHCWR 210 (520)
Q Consensus 139 ~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~----~~~~~~~~~~~~v~~~~----~~~~~l~sg~~dg~i~vwd 210 (520)
.+|.+-|.|+.|.+.|+.+|||+.|++|+|||.... .+....+.|.+.|..+. .-|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 589999999999999999999999999999996433 45667789999998886 4588999999999999997
Q ss_pred cccCcceeeeccC-CccccceEEeccCCCCeEEEEEc----CCEEEEEecCCeEEEEECCCCc------EEEEee-----
Q 009993 211 AVEVLPHLFDISG-SEKQNTQFRLWEHEGPITSLALD----LTRIYSGSWDMTVRVWDRALLK------CLKVLR----- 274 (520)
Q Consensus 211 ~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~v~iwd~~~~~------~~~~~~----- 274 (520)
-.... ... ........++....+.|+++.|. |-.+++++.||++|||+.-..- ....+.
T Consensus 90 E~~~~-----~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~p 164 (361)
T KOG2445|consen 90 EQEKS-----EEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDP 164 (361)
T ss_pred ecccc-----cccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCC
Confidence 42110 111 12344566777888999999994 4569999999999999865432 222222
Q ss_pred ---eccCEEEEe-----eCCCEEEEEcCC------eEEEEECCCCe----eeEEeecccccceEEEEecCCC----CEEE
Q 009993 275 ---HSDWVYGLA-----PHDTTVASTSGS------DVYIWDTNSGC----LLTVVNGAHVGNTKSLARSHTG----DFLF 332 (520)
Q Consensus 275 ---~~~~v~~~~-----~~~~~l~~~~d~------~i~iwd~~~~~----~~~~~~~~~~~~i~~l~~s~~~----~~l~ 332 (520)
+..+..|++ ....+|++|++. .++||....+. .+.++. +|..+|+.++|.|+- ..||
T Consensus 165 p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 165 PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeeeccccCCceeeEE
Confidence 344555665 456789999865 78999765542 344555 699999999999953 4799
Q ss_pred EEeCCCeEEEEEcccCc--------------cccceeeeeeecCCcCCEEEEEec--CCEEEEEeCCCcEEEEeCC
Q 009993 333 TGGEDGAIHMYEIINDC--------------TEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVR 392 (520)
Q Consensus 333 tg~~dg~i~iwd~~~~~--------------~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~ 392 (520)
+++.|| |+||.+.... ...++..+..+.+|.+.|..+.|+ +..|.+.|.||.|++|...
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 999999 9999997421 112345677788999999999996 6899999999999999865
No 108
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=3.9e-24 Score=202.92 Aligned_cols=236 Identities=18% Similarity=0.236 Sum_probs=199.7
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEec-----CCCEEEEEeCCCcEEEEEcccC
Q 009993 140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAA-----DKKLLVAGGTDGFIHCWRAVEV 214 (520)
Q Consensus 140 ~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~-----~~~~l~sg~~dg~i~vwd~~~~ 214 (520)
+-.-.|.+++.+|+|++||+|..-|+++||++..-+....+..|...|.|+.. ..++|++++.|..|+|+|+...
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN 536 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence 44568999999999999999999999999999999999999999999999982 3568999999999999998654
Q ss_pred cceeeeccCCccccceEEeccCCCCeEEEEE--cC--CEEEEEecCCeEEEEECCCCcEEEEee------eccCEEEEe-
Q 009993 215 LPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DL--TRIYSGSWDMTVRVWDRALLKCLKVLR------HSDWVYGLA- 283 (520)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~------~~~~v~~~~- 283 (520)
.....++.+|...|+++.| ++ ..+++++.|+.|.+--.+.......+. ....++.+.
T Consensus 537 ------------y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~V 604 (1080)
T KOG1408|consen 537 ------------YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAV 604 (1080)
T ss_pred ------------cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeee
Confidence 4567788999999999999 44 569999999887554332111111111 234556665
Q ss_pred -eCCCEEEEEc-CCeEEEEECCCCeeeEEeec--ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeee
Q 009993 284 -PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG--AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT 359 (520)
Q Consensus 284 -~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~--~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~ 359 (520)
|..+++++++ |..|+|||+.+++..+.|+. +|.+....+...|.|.|+++.+.|.++.++|+.++ .++.+
T Consensus 605 dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg------EcvA~ 678 (1080)
T KOG1408|consen 605 DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG------ECVAQ 678 (1080)
T ss_pred CCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc------hhhhh
Confidence 8888999988 99999999999999999985 45677888999999999999999999999999999 89999
Q ss_pred ecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993 360 WIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 360 ~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 393 (520)
+.||...|+.+.|.+ ++|++.+.||.|.||.+..
T Consensus 679 m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 679 MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 999999999999966 7999999999999999864
No 109
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=2.6e-24 Score=185.12 Aligned_cols=245 Identities=16% Similarity=0.251 Sum_probs=193.8
Q ss_pred HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC----CCCceEEEEecCCCEEEEEeCCCcEEE
Q 009993 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK----PLGCTIRAVAADKKLLVAGGTDGFIHC 208 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~l~sg~~dg~i~v 208 (520)
.++++|..|.+.|+++.|+|....|++|+.|++|++||+......+.++ .+.....++.|.|.+|+.|..-.++++
T Consensus 163 PvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rl 242 (430)
T KOG0640|consen 163 PVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRL 242 (430)
T ss_pred ceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeE
Confidence 4589999999999999999999999999999999999997654333222 233334445599999999999999999
Q ss_pred EEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee--ec-cCEEEEe
Q 009993 209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HS-DWVYGLA 283 (520)
Q Consensus 209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~-~~v~~~~ 283 (520)
||+.+....+- ...-.+|++.|+++.+ .++..++|+.||.|++||--+++|+.++. |. ..|.+..
T Consensus 243 Ydv~T~Qcfvs----------anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~ 312 (430)
T KOG0640|consen 243 YDVNTYQCFVS----------ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAV 312 (430)
T ss_pred EeccceeEeee----------cCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEE
Confidence 99988643221 1122469999999999 67899999999999999999999999997 54 4555554
Q ss_pred --eCCCEEEEEc-CCeEEEEECCCCeeeEEeeccc----ccceEEEEecCCCCEEEEEeC-CCeEEEEEcccCcccccee
Q 009993 284 --PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAH----VGNTKSLARSHTGDFLFTGGE-DGAIHMYEIINDCTEANVL 355 (520)
Q Consensus 284 --~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~----~~~i~~l~~s~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~ 355 (520)
.+++++++.+ |..+++|.+.+++++..+.++. ...-+...|+...++++.-.+ .+.+.-||.++...
T Consensus 313 Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr----- 387 (430)
T KOG0640|consen 313 FTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR----- 387 (430)
T ss_pred EccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhh-----
Confidence 7899999988 9999999999999999887421 112234567888888877654 46789999999853
Q ss_pred eeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCC
Q 009993 356 LVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR 392 (520)
Q Consensus 356 ~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~ 392 (520)
....-.+|.+.++.+.-+| .-+++++.|..+++|--+
T Consensus 388 ~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 388 VALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred hhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 2222348999999999987 689999999999999644
No 110
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.6e-23 Score=187.31 Aligned_cols=285 Identities=15% Similarity=0.209 Sum_probs=216.5
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEECCCC--cEEEEeCCCCce--EEEEecCCC-EEEEEeCCCcEEEEEcccCcc
Q 009993 142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG--FSIASSKPLGCT--IRAVAADKK-LLVAGGTDGFIHCWRAVEVLP 216 (520)
Q Consensus 142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~--~~~~~~~~~~~~--v~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~ 216 (520)
.++|+++.|+|...+|++|+.|++++||.++.. ..+..+.-...+ ..++.|+|. .+++++....++.||+.+...
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 478999999999999999999999999998643 344444333334 445669999 899999999999999988753
Q ss_pred eeeeccCCccccceEEeccCC-CCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEE
Q 009993 217 HLFDISGSEKQNTQFRLWEHE-GPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVAS 291 (520)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~ 291 (520)
. .+..+.++. ..+..+.+ ++++|+..+..|.|.+....+++.+..+...+.|..+. .+++.|++
T Consensus 293 ~-----------k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~ 361 (514)
T KOG2055|consen 293 T-----------KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLA 361 (514)
T ss_pred c-----------cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEE
Confidence 2 222233333 23333433 78899999999999999999999999999888888776 67777766
Q ss_pred Ec-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEE
Q 009993 292 TS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL 370 (520)
Q Consensus 292 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l 370 (520)
++ +|.|.+||++...++.++.....-.-+++|.++++.+||+|+..|.|.|||..+......++++.++..-...|+++
T Consensus 362 ~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl 441 (514)
T KOG2055|consen 362 SGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSL 441 (514)
T ss_pred EcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeee
Confidence 66 89999999999999988874333345678888999999999999999999987766666668888888888899999
Q ss_pred EecC--CEEEEEe--CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEE
Q 009993 371 AFEF--PWLVSAA--GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVR 446 (520)
Q Consensus 371 ~~~~--~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~ 446 (520)
.|++ +.|+.+| .+..+++-.+.+......+.... -.-+...+++++|++.++|.|..+|.|.
T Consensus 442 ~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n--------------~~vg~vtc~aFSP~sG~lAvGNe~grv~ 507 (514)
T KOG2055|consen 442 QFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSN--------------TKVGHVTCMAFSPNSGYLAVGNEAGRVH 507 (514)
T ss_pred eeCcchhhhhhhhhccccceEEEeccceeeeccCCCCC--------------CcccceEEEEecCCCceEEeecCCCcee
Confidence 9977 5666555 47789999888754333222110 1112234445555556999999999999
Q ss_pred EEeCC
Q 009993 447 IWNFS 451 (520)
Q Consensus 447 iwd~~ 451 (520)
+|.+.
T Consensus 508 l~kL~ 512 (514)
T KOG2055|consen 508 LFKLH 512 (514)
T ss_pred eEeec
Confidence 99874
No 111
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.3e-23 Score=181.24 Aligned_cols=282 Identities=17% Similarity=0.211 Sum_probs=210.1
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEec
Q 009993 157 LFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW 234 (520)
Q Consensus 157 l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 234 (520)
+++.-.++++.. ..++.+.+|...|..++ .....+.+++.|.+-++|.++++. +...+.
T Consensus 127 ivssFk~~t~~~------~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~-------------CL~~Y~ 187 (481)
T KOG0300|consen 127 IVSSFKDGTVKF------RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA-------------CLATYT 187 (481)
T ss_pred heeeecCCceeE------eehhhhcccccceeeehhhcCCcceeecccccceeEEeecccc-------------ceeeec
Confidence 444445555322 34567789999999887 334588899999999999998874 778899
Q ss_pred cCCCCeEEEEE--cCCEEEEEecCCeEEEEEC------CC------------------------------Cc----EEEE
Q 009993 235 EHEGPITSLAL--DLTRIYSGSWDMTVRVWDR------AL------------------------------LK----CLKV 272 (520)
Q Consensus 235 ~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~------~~------------------------------~~----~~~~ 272 (520)
||.+.|+++.| .+.++++++.|++..||.. .. +. ++..
T Consensus 188 GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ 267 (481)
T KOG0300|consen 188 GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMR 267 (481)
T ss_pred ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeee
Confidence 99999999999 5578999999999999962 10 00 1111
Q ss_pred ee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993 273 LR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND 348 (520)
Q Consensus 273 ~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~ 348 (520)
+. |...|.+.. ..++.+++++ |.+..+||+++++.+..+. +|....+.++-+|..+++++.+.|.+.++||++..
T Consensus 268 ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~Lt-GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea 346 (481)
T KOG0300|consen 268 LTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILT-GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA 346 (481)
T ss_pred eeccccceEehhhhcCcceeeeeeccccceeeeeccCceecccc-CcchhccccccCCcceEEEEeccCceeEeccchhh
Confidence 22 555555554 6788999999 9999999999999999987 79999999999999999999999999999999855
Q ss_pred ccccceeeeeeecCCcCCEEEEEec-CCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeE
Q 009993 349 CTEANVLLVATWIPHTGPVNSLAFE-FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLL 427 (520)
Q Consensus 349 ~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 427 (520)
- ..+..|.+|+..|+++.|. ...+++|+.|.+|+|||+++...+ ...+-......-.
T Consensus 347 I-----~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsp-----------------lATIRtdS~~NRv 404 (481)
T KOG0300|consen 347 I-----QSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSP-----------------LATIRTDSPANRV 404 (481)
T ss_pred c-----ceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCc-----------------ceeeecCCcccee
Confidence 2 5688899999999999996 479999999999999999985321 1111122223344
Q ss_pred EEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCC
Q 009993 428 SVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGG 486 (520)
Q Consensus 428 ~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 486 (520)
+++-.+..|+.--++..|++||+...... ++.+. ....++|-+..++|..+-.
T Consensus 405 avs~g~~iIAiPhDNRqvRlfDlnG~Rla-RlPrt-----sRqgHrRMV~c~AW~eehp 457 (481)
T KOG0300|consen 405 AVSKGHPIIAIPHDNRQVRLFDLNGNRLA-RLPRT-----SRQGHRRMVTCCAWLEEHP 457 (481)
T ss_pred EeecCCceEEeccCCceEEEEecCCCccc-cCCcc-----cccccceeeeeeeccccCc
Confidence 55555668888888899999999754332 21111 1123444567777776543
No 112
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=3.4e-23 Score=193.01 Aligned_cols=298 Identities=19% Similarity=0.191 Sum_probs=221.5
Q ss_pred HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCC--EEEEEeCCCcEEE
Q 009993 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKK--LLVAGGTDGFIHC 208 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~--~l~sg~~dg~i~v 208 (520)
.+...++||++.|.|+...|.|.+|++|+.||+|+||.+.+|.+++++.-. ..|.+++ |.+. .|+++-. ..+.+
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~~vaw~P~~~~~vLAvA~~-~~~~i 468 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIRSVAWNPLSDLCVLAVAVG-ECVLI 468 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec-ceeEEEEecCCCCceeEEEEec-CceEE
Confidence 345567999999999999999999999999999999999999999987632 2455544 4443 4444433 33555
Q ss_pred EEcccCcc--------eeeec-cCC---------------ccccceEEeccCCCCeEEEEE--cCCEEEEEecC---CeE
Q 009993 209 WRAVEVLP--------HLFDI-SGS---------------EKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD---MTV 259 (520)
Q Consensus 209 wd~~~~~~--------~~~~~-~~~---------------~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d---g~v 259 (520)
.+..-|.. .+... ... +....+.....|...|..+.| .|+||++...+ ..|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 55433310 00000 000 011123345568899999999 78999887654 578
Q ss_pred EEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC
Q 009993 260 RVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE 336 (520)
Q Consensus 260 ~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~ 336 (520)
.|.++.......-++ ..+.|.++. |...++++++...|+|||+..+..++.+.. ....|..++.+|.|..|+.|+.
T Consensus 549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~t-g~kwiS~msihp~GDnli~gs~ 627 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLT-GSKWISSMSIHPNGDNLILGSY 627 (733)
T ss_pred EEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhc-CCeeeeeeeecCCCCeEEEecC
Confidence 899987766655554 556666666 777899999999999999999888877763 5668999999999999999999
Q ss_pred CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCC
Q 009993 337 DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEP 414 (520)
Q Consensus 337 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 414 (520)
|+.+..||+.-.. ++.+++.-|...+++++|++ .++++|+.||++.|+.-.-...... + .+--
T Consensus 628 d~k~~WfDldlss-----kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~q---n-------pliV 692 (733)
T KOG0650|consen 628 DKKMCWFDLDLSS-----KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQ---N-------PLIV 692 (733)
T ss_pred CCeeEEEEcccCc-----chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhc---C-------CceE
Confidence 9999999998775 67888999999999999998 6899999999999986542111100 0 0122
Q ss_pred CcccccCccee----eEEEEecCC--EEEEecCCCeEEEE
Q 009993 415 PQRMLHGFECN----LLSVDIGAD--RIVCGGEEGIVRIW 448 (520)
Q Consensus 415 ~~~~~~~~~~~----v~~~~~~~~--~l~sg~~Dg~v~iw 448 (520)
+...+.+|... |+...|++. +|+++|.||+|++|
T Consensus 693 PlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 693 PLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 34556777766 888888887 99999999999998
No 113
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=9.7e-23 Score=175.72 Aligned_cols=267 Identities=15% Similarity=0.164 Sum_probs=197.1
Q ss_pred EEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCC
Q 009993 189 AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALL 267 (520)
Q Consensus 189 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~ 267 (520)
.+++.+..|++++.||++++||+... .......|..++.+.+| +...+++|+.||.|+.+|+.++
T Consensus 20 ~f~~~~~~LLvssWDgslrlYdv~~~--------------~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 20 KFSPSSSDLLVSSWDGSLRLYDVPAN--------------SLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred EEcCcCCcEEEEeccCcEEEEeccch--------------hhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCC
Confidence 34477888888999999999998654 22233468999999999 7789999999999999999999
Q ss_pred cEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEE
Q 009993 268 KCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE 344 (520)
Q Consensus 268 ~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd 344 (520)
.......|...|.|+. +....+++|+ |++|++||.+.......+. ....|.++.. .|+.|++|+.|..+.+||
T Consensus 86 ~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d--~~kkVy~~~v--~g~~LvVg~~~r~v~iyD 161 (323)
T KOG1036|consen 86 NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD--QGKKVYCMDV--SGNRLVVGTSDRKVLIYD 161 (323)
T ss_pred cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--cCceEEEEec--cCCEEEEeecCceEEEEE
Confidence 8888888999999999 5577888888 9999999999866666654 3458888877 478999999999999999
Q ss_pred cccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCccccc--
Q 009993 345 IINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH-- 420 (520)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 420 (520)
+++..... ...-..-.-.++|+++-| .-.++++-||.|.+=.++......+. + ..+........
T Consensus 162 LRn~~~~~----q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~sk---k-----yaFkCHr~~~~~~ 229 (323)
T KOG1036|consen 162 LRNLDEPF----QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSK---K-----YAFKCHRLSEKDT 229 (323)
T ss_pred cccccchh----hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhh---c-----eeEEeeecccCCc
Confidence 99874321 111223345688998876 67889999999988766653111000 0 00000000001
Q ss_pred CcceeeEEEEecCC--EEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCccccccccc
Q 009993 421 GFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAA 495 (520)
Q Consensus 421 ~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~~ 495 (520)
.---+|.++.|++- .|||||.||.|.+||..+.+.+.+...- ...+..++|+.||..+|.++..-
T Consensus 230 ~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~----------~~SI~slsfs~dG~~LAia~sy~ 296 (323)
T KOG1036|consen 230 EIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY----------ETSISSLSFSMDGSLLAIASSYQ 296 (323)
T ss_pred eEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC----------CCceEEEEeccCCCeEEEEechh
Confidence 11134666666654 8999999999999999998887765332 23367899999999999976543
No 114
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.5e-22 Score=173.92 Aligned_cols=270 Identities=15% Similarity=0.193 Sum_probs=194.4
Q ss_pred CceEEEEec-CCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEE
Q 009993 184 GCTIRAVAA-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVR 260 (520)
Q Consensus 184 ~~~v~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~ 260 (520)
....++|+| ...++++||.||+|++|+++... .........|.++|.+++| +|..+++|+.|+.++
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g-----------~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k 97 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSG-----------QLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAK 97 (347)
T ss_pred chheeEeccccCceEEecccCCceEEEEEecCC-----------cccchhhhccCCCeEEEEEccCCceEEeeccCCceE
Confidence 334556667 56677799999999999997631 1112345579999999999 889999999999999
Q ss_pred EEECCCCcEEEEeeeccCEEEEe----eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEe
Q 009993 261 VWDRALLKCLKVLRHSDWVYGLA----PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG 335 (520)
Q Consensus 261 iwd~~~~~~~~~~~~~~~v~~~~----~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~ 335 (520)
+||+.+++....-.|..+|.++. +.-..|++|+ |.+|+.||++...++.++. -...++++.. ....++++.
T Consensus 98 ~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~--LPeRvYa~Dv--~~pm~vVat 173 (347)
T KOG0647|consen 98 LWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ--LPERVYAADV--LYPMAVVAT 173 (347)
T ss_pred EEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee--ccceeeehhc--cCceeEEEe
Confidence 99999998777777999999887 2334789999 9999999999999998886 5667777765 346788899
Q ss_pred CCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe--cCCEEEEEeCCCcEEEEeCCcccc--cCCCCCCCceeeeee
Q 009993 336 EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLR--SGRPTSGKRVSRVIE 411 (520)
Q Consensus 336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~ 411 (520)
.+..|.+|+++++..+.. .+ ...-.-.++||+. +.+..+.|+-+|.+.|..+..+.. .+....++..
T Consensus 174 a~r~i~vynL~n~~te~k--~~--~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~----- 244 (347)
T KOG0647|consen 174 AERHIAVYNLENPPTEFK--RI--ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRST----- 244 (347)
T ss_pred cCCcEEEEEcCCCcchhh--hh--cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccC-----
Confidence 999999999988732111 11 1112235677776 446669999999999999987522 1111111110
Q ss_pred cCCCcccccCcceeeEEEEecC--CEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCccc
Q 009993 412 VEPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTD 489 (520)
Q Consensus 412 ~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~ 489 (520)
.. ..+.--.|.++.|++ ..|+|+|.||+..+||-.....++.... +...++.+.|+.+|..++
T Consensus 245 --~~---~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~----------~~qpItcc~fn~~G~ifa 309 (347)
T KOG0647|consen 245 --NS---VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET----------HPQPITCCSFNRNGSIFA 309 (347)
T ss_pred --CC---CCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCc----------CCCccceeEecCCCCEEE
Confidence 00 011112344555555 4999999999999999988777665332 234468999999999888
Q ss_pred ccc
Q 009993 490 QCS 492 (520)
Q Consensus 490 ~~s 492 (520)
-+.
T Consensus 310 YA~ 312 (347)
T KOG0647|consen 310 YAL 312 (347)
T ss_pred EEe
Confidence 753
No 115
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=5.9e-23 Score=194.99 Aligned_cols=318 Identities=17% Similarity=0.244 Sum_probs=226.7
Q ss_pred hhccccccEEEEEEccC-----------CCEEEEEeCCCeEEEEECCCCc---EEEE----------e------------
Q 009993 137 VLYGHTEAVLTVFVLAS-----------AKLLFTSGYDSIVRMWHLEDGF---SIAS----------S------------ 180 (520)
Q Consensus 137 ~l~~h~~~V~~l~~~~~-----------~~~l~sgs~dg~v~vwd~~~~~---~~~~----------~------------ 180 (520)
.+-.|...|+.+.--|. ...++|++.|++||+||++.+. ..+. .
T Consensus 364 s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~ 443 (1080)
T KOG1408|consen 364 SMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDA 443 (1080)
T ss_pred eeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhc
Confidence 44568888888765551 1358999999999999997531 1000 0
Q ss_pred ------------CC--CCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-
Q 009993 181 ------------KP--LGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL- 245 (520)
Q Consensus 181 ------------~~--~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~- 245 (520)
-+ .+....+++|++++|++|..-|.++||++.+- .....+..|...|.|+.|
T Consensus 444 ~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l-------------~~~~~~eAHesEilcLeyS 510 (1080)
T KOG1408|consen 444 SAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL-------------EYTCFMEAHESEILCLEYS 510 (1080)
T ss_pred cCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhh-------------hhhhheecccceeEEEeec
Confidence 00 12234456699999999999999999998654 345567789999999999
Q ss_pred ----cCCEEEEEecCCeEEEEECCCC-cEEEEee-eccCEEEEe--eCC--CEEEEEc-CCeEEEEECCC-CeeeEEeec
Q 009993 246 ----DLTRIYSGSWDMTVRVWDRALL-KCLKVLR-HSDWVYGLA--PHD--TTVASTS-GSDVYIWDTNS-GCLLTVVNG 313 (520)
Q Consensus 246 ----~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~-~~~~v~~~~--~~~--~~l~~~~-d~~i~iwd~~~-~~~~~~~~~ 313 (520)
..++|++++.|..|.+||+... ..++++. |...|+++. ..| ..+++++ |..|. |+... ......+..
T Consensus 511 ~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~f~r 589 (1080)
T KOG1408|consen 511 FPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRLFPR 589 (1080)
T ss_pred CchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhh-eehhccccCceeccc
Confidence 2367999999999999998654 4455665 899999987 333 4556666 66554 33332 111122221
Q ss_pred c----cccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec---CCcCCEEEEEecC--CEEEEEeCCC
Q 009993 314 A----HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI---PHTGPVNSLAFEF--PWLVSAAGDG 384 (520)
Q Consensus 314 ~----~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~--~~l~s~s~dg 384 (520)
+ ....++.|+..|..+++++++.|..|+|||+..+ +..+.++ +|.+....+..+| .||++...|.
T Consensus 590 ~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg------Kq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdk 663 (1080)
T KOG1408|consen 590 HTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG------KQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDK 663 (1080)
T ss_pred cccccccceEEEeeeCCCcceEEEEecccceEEEecccc------ceeeeecccccCCCceEEEEECCCccEEEEeecCC
Confidence 1 2346889999999999999999999999999999 5666665 4667788888877 6999999999
Q ss_pred cEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EEEEecCCCeEEEEeCCchHhHHHHhhh
Q 009993 385 KLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRARA 462 (520)
Q Consensus 385 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~~~ 462 (520)
++.++|+.+ .++.....||...|+.+.|.++ .|++.+.||.|.||.+.....+....+.
T Consensus 664 tl~~~Df~s-------------------gEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~mii~m~~r~ 724 (1080)
T KOG1408|consen 664 TLCFVDFVS-------------------GECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTMIIRMVNRN 724 (1080)
T ss_pred ceEEEEecc-------------------chhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchhHhHHHHHHh
Confidence 999999988 5566677899999999999877 9999999999999999876554443322
Q ss_pred hcccccchhhhhccceeeeccCCCcccccccccc
Q 009993 463 LRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAK 496 (520)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~~~ 496 (520)
. ..+... .....+.-..|+..--+.++.+.+
T Consensus 725 ~-~lr~rq--~~~~~~~pl~p~~p~d~~~~~~p~ 755 (1080)
T KOG1408|consen 725 G-RLRVRQ--LEKFIAVPLEPDNPNDASCSANPK 755 (1080)
T ss_pred h-HHHHHh--ccCCcCCCCCCCCCCCCccccCcc
Confidence 1 111111 122345555666555555555444
No 116
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=4.3e-23 Score=193.83 Aligned_cols=271 Identities=19% Similarity=0.218 Sum_probs=204.5
Q ss_pred CCEEEEEeCCCeEEEEECCCCcE------EEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCc
Q 009993 154 AKLLFTSGYDSIVRMWHLEDGFS------IASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSE 225 (520)
Q Consensus 154 ~~~l~sgs~dg~v~vwd~~~~~~------~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~ 225 (520)
...|+.+..||.|.++|...... +..+..|...|..+. |....|++++.|.++++||+.++..
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l--------- 134 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL--------- 134 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee---------
Confidence 46889999999999999865422 355678999999887 7667899999999999999987642
Q ss_pred cccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCc--------------------EEEEe--------e
Q 009993 226 KQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLK--------------------CLKVL--------R 274 (520)
Q Consensus 226 ~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~--------------------~~~~~--------~ 274 (520)
.....+.||.+.|.+++| ++..+++|+.||.|.|||++-.. ..+.+ .
T Consensus 135 --~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 135 --VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred --ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 122357799999999999 77899999999999999985321 00000 0
Q ss_pred eccC----EEEEe-eCCCEEEEEc--CCeEEEEECCCCeeeEEeec-------cc---ccceEEEEecCCCCEEEEEeCC
Q 009993 275 HSDW----VYGLA-PHDTTVASTS--GSDVYIWDTNSGCLLTVVNG-------AH---VGNTKSLARSHTGDFLFTGGED 337 (520)
Q Consensus 275 ~~~~----v~~~~-~~~~~l~~~~--d~~i~iwd~~~~~~~~~~~~-------~~---~~~i~~l~~s~~~~~l~tg~~d 337 (520)
+... |+.+. .|+..|++++ |+.|+|||+++......... .| .-.+.++.....|.+|++.+.|
T Consensus 213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 2222 34444 6888888877 89999999998654332211 12 3357788888888999998899
Q ss_pred CeEEEEEcccCccccceeeeeeecCCcCC----EEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecC
Q 009993 338 GAIHMYEIINDCTEANVLLVATWIPHTGP----VNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVE 413 (520)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~----v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 413 (520)
+.|++|++..... .++..+.++... -..+.+++.++++|+.|...++|.+.+. .
T Consensus 293 ~sIy~ynm~s~s~----sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~------------------e 350 (720)
T KOG0321|consen 293 NSIYFYNMRSLSI----SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSP------------------E 350 (720)
T ss_pred CcEEEEeccccCc----CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCc------------------c
Confidence 9999999987643 345555554322 1334456789999999999999999986 5
Q ss_pred CCcccccCcceeeEEEEecCC---EEEEecCCCeEEEEeCCchHhHH
Q 009993 414 PPQRMLHGFECNLLSVDIGAD---RIVCGGEEGIVRIWNFSQAFEIE 457 (520)
Q Consensus 414 ~~~~~~~~~~~~v~~~~~~~~---~l~sg~~Dg~v~iwd~~~~~~~~ 457 (520)
.+...+.||...|+++.|.+. -++|+++|-+++||++.++.+-.
T Consensus 351 ~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~ 397 (720)
T KOG0321|consen 351 APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEI 397 (720)
T ss_pred CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhc
Confidence 566778899999999998765 78888999999999998765544
No 117
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.1e-22 Score=195.75 Aligned_cols=236 Identities=21% Similarity=0.249 Sum_probs=197.2
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC-cEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcce
Q 009993 139 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-FSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPH 217 (520)
Q Consensus 139 ~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~ 217 (520)
.+|+.+-+.++|.|+|++|++++.||.|++|+.... +...++..++..|.++...+++|++|+.+++|.+|.+.++..
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~- 88 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEE- 88 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCc-
Confidence 589999999999999999999999999999998766 444444448889999998899999999999999999877642
Q ss_pred eeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEE
Q 009993 218 LFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVAST 292 (520)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~ 292 (520)
...+...+-+++++++ +|++++.||.|-.|++-++.+......++ |..+|.++. |.+++|++.
T Consensus 89 ------------~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvs 156 (933)
T KOG1274|consen 89 ------------DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVS 156 (933)
T ss_pred ------------cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEE
Confidence 1123334678888888 66799999999999999999888888877 999999998 889999999
Q ss_pred c-CCeEEEEECCCCeeeEEeec-------ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeee--cC
Q 009993 293 S-GSDVYIWDTNSGCLLTVVNG-------AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW--IP 362 (520)
Q Consensus 293 ~-d~~i~iwd~~~~~~~~~~~~-------~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~--~~ 362 (520)
+ ||.|++||+.++.....+.. .....+..++|+|++..++..+.|+.|++|+..+.. ....+ ..
T Consensus 157 s~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we------~~f~Lr~~~ 230 (933)
T KOG1274|consen 157 SCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE------LQFKLRDKL 230 (933)
T ss_pred ecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce------eheeecccc
Confidence 8 99999999999877665542 113456789999999999999999999999998883 33333 33
Q ss_pred CcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993 363 HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 363 h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 393 (520)
+...+.++.|+| .|||+++.||.|.|||..+
T Consensus 231 ~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 231 SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 455599999987 6999999999999999986
No 118
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.6e-22 Score=171.90 Aligned_cols=272 Identities=14% Similarity=0.146 Sum_probs=200.6
Q ss_pred EEeCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEE
Q 009993 178 ASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSG 253 (520)
Q Consensus 178 ~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~ 253 (520)
+.+......|.++ +.+|..+++++.|.++++||..++. ...++..+.-.|..++| ..+.++.+
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~-------------~~~ti~skkyG~~~~~Fth~~~~~i~s 74 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGK-------------QVKTINSKKYGVDLACFTHHSNTVIHS 74 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCc-------------eeeEeecccccccEEEEecCCceEEEc
Confidence 3444444555555 4899999999999999999998763 45556666667777888 56677777
Q ss_pred ec--CCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCC
Q 009993 254 SW--DMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT 327 (520)
Q Consensus 254 s~--dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~ 327 (520)
+. |.+|+..++.+.+.++.+. |...|++++ |-+..+++++ |++|++||++..++...+. ...-...+|.|.
T Consensus 75 Stk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~---~~~~pi~AfDp~ 151 (311)
T KOG1446|consen 75 STKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN---LSGRPIAAFDPE 151 (311)
T ss_pred cCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe---cCCCcceeECCC
Confidence 66 8899999999999999998 999999988 8889999999 9999999999888777664 233346789999
Q ss_pred CCEEEEEeCCCeEEEEEcccCccccceeeeeeec---CCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCC
Q 009993 328 GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI---PHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTS 402 (520)
Q Consensus 328 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 402 (520)
|-++|++.....|++||++.-... +..++. +.....+.|.|+| ++|+.++..+.+++.|.-++........
T Consensus 152 GLifA~~~~~~~IkLyD~Rs~dkg----PF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~ 227 (311)
T KOG1446|consen 152 GLIFALANGSELIKLYDLRSFDKG----PFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSG 227 (311)
T ss_pred CcEEEEecCCCeEEEEEecccCCC----CceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEee
Confidence 999999988889999999876431 222222 4466789999965 7999999999999999987643221111
Q ss_pred CCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeec
Q 009993 403 GKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMS 482 (520)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 482 (520)
.. . .+....-.++.|+++++++|+.||+|.+|+++++..+.......-+ ....+.|+
T Consensus 228 ~~------------~--~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~---------~~~~~~fn 284 (311)
T KOG1446|consen 228 YP------------N--AGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGG---------PVSCVRFN 284 (311)
T ss_pred cc------------C--CCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCC---------CccccccC
Confidence 00 0 0001123456688889999999999999999999887665443111 13445577
Q ss_pred cCCCcccccc
Q 009993 483 SKGGRTDQCS 492 (520)
Q Consensus 483 ~~g~~~~~~s 492 (520)
|.-..+++++
T Consensus 285 P~~~mf~sa~ 294 (311)
T KOG1446|consen 285 PRYAMFVSAS 294 (311)
T ss_pred CceeeeeecC
Confidence 7666666544
No 119
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=9.7e-23 Score=174.30 Aligned_cols=215 Identities=22% Similarity=0.318 Sum_probs=163.9
Q ss_pred CCCceEEEEe---cCCCEEEEEeCCCcEEEEEcccCccee--eeccCCccccceEEeccCCCCeEEEEE---cCCEEEEE
Q 009993 182 PLGCTIRAVA---ADKKLLVAGGTDGFIHCWRAVEVLPHL--FDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSG 253 (520)
Q Consensus 182 ~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~ 253 (520)
.|.+.|.++. ..|+++++|+.||.|.+||++.....- .-+-..........-.+|.-.|.++.| |...+.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 4556666665 568899999999999999997653100 000000000011122468889999999 77899999
Q ss_pred ecCCeEEEEECCCCcEEEEeeeccCEEEEe-----eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCC
Q 009993 254 SWDMTVRVWDRALLKCLKVLRHSDWVYGLA-----PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT 327 (520)
Q Consensus 254 s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~-----~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~ 327 (520)
+.|.++++||..+.+....+..++.|++-+ ..-.++++|. +-.|++.|+.+|..-..+. +|...|.++.|+|.
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-GHRDGVLAVEWSPS 199 (397)
T ss_pred cccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-cccCceEEEEeccC
Confidence 999999999999999999999888887643 3455777777 7889999999999999997 79999999999998
Q ss_pred CCE-EEEEeCCCeEEEEEcccCcc---------ccceeeeeeecCCcCCEEEEEec--CCEEEEEeCCCcEEEEeCCccc
Q 009993 328 GDF-LFTGGEDGAIHMYEIINDCT---------EANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVRKLL 395 (520)
Q Consensus 328 ~~~-l~tg~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~ 395 (520)
..+ |++|+.||.|++||++.... ...++.+.+-..|.+.|+.++|. +.++++++.|..+++|+..++.
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 875 67899999999999986521 01122333456788999999994 5799999999999999998764
Q ss_pred cc
Q 009993 396 RS 397 (520)
Q Consensus 396 ~~ 397 (520)
..
T Consensus 280 nt 281 (397)
T KOG4283|consen 280 NT 281 (397)
T ss_pred cc
Confidence 43
No 120
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=6.8e-22 Score=180.88 Aligned_cols=361 Identities=15% Similarity=0.147 Sum_probs=244.4
Q ss_pred hcCCCCCCCCCCCCCCCcccHH-------Hhhhhhcccc-ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCC
Q 009993 111 RWGLPIASAPLGAGFSDDKSWK-------ELIDVLYGHT-EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP 182 (520)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~W~-------~~~~~l~~h~-~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~ 182 (520)
.|.+-+..++..-|..-...|. +...+++++. .-|.|++|.++|. ++||..+|.|.||+..+.+..+....
T Consensus 207 ~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~a 285 (626)
T KOG2106|consen 207 TFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHA 285 (626)
T ss_pred EeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeee
Confidence 4543333444445555556665 2244555553 6799999999987 78999999999999988877777779
Q ss_pred CCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCccee---------------------------eeccCCccccceEEec
Q 009993 183 LGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHL---------------------------FDISGSEKQNTQFRLW 234 (520)
Q Consensus 183 ~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~---------------------------~~~~~~~~~~~~~~~~ 234 (520)
|...|.++. .....|++|+.|..|..||-.-..... +-+.+.-.........
T Consensus 286 H~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~ 365 (626)
T KOG2106|consen 286 HDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQ 365 (626)
T ss_pred cCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEE
Confidence 999999887 334455669999999999831111000 0011111222334455
Q ss_pred cCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeE
Q 009993 235 EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLT 309 (520)
Q Consensus 235 ~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~ 309 (520)
+|......++. +.+.+++++.|+.+++|+ ..+.+.+....+++.|+. |.| .++.|. .|...+.|.++...+.
T Consensus 366 gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~ 442 (626)
T KOG2106|consen 366 GHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT 442 (626)
T ss_pred ecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEE
Confidence 78888888888 557899999999999999 556666666666666666 778 888888 8999999999966665
Q ss_pred EeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEE
Q 009993 310 VVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLS 387 (520)
Q Consensus 310 ~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~ 387 (520)
.-. ...+++++.|+|+|.+||.|+.|+.|++|.+....... ..+... |..+|+.+.|++ ++|.+-+.|-.|-
T Consensus 443 ~~~--d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y--~r~~k~--~gs~ithLDwS~Ds~~~~~~S~d~eiL 516 (626)
T KOG2106|consen 443 IHT--DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKY--SRVGKC--SGSPITHLDWSSDSQFLVSNSGDYEIL 516 (626)
T ss_pred EEe--cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEE--EEeeee--cCceeEEeeecCCCceEEeccCceEEE
Confidence 544 38899999999999999999999999999998774311 222223 338999999964 7999999999999
Q ss_pred EEeCCcccccCC-----CCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhh
Q 009993 388 LIDVRKLLRSGR-----PTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARA 462 (520)
Q Consensus 388 vwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~ 462 (520)
.|.......... +....+..-+.... ...+....+.+.+...+.+++|.+.|+|++|...--..-
T Consensus 517 yW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g----~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~r------ 586 (626)
T KOG2106|consen 517 YWKPSECKQITSVKDVKWATYTCTLGFEVFG----GSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPR------ 586 (626)
T ss_pred EEccccCcccceecceeeeeeEEEEEEEEec----ccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCc------
Confidence 995443222211 00000000000000 112233445555566779999999999999987632111
Q ss_pred hcccccchhhhhccceeeeccCCCcccccc
Q 009993 463 LRGIRLENRMRRRKLQTEMSSKGGRTDQCS 492 (520)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s 492 (520)
...-....+.+-+..++|.-+...+.+..
T Consensus 587 -A~~he~~ghs~~vt~V~Fl~~d~~li~tg 615 (626)
T KOG2106|consen 587 -APSHEYGGHSSHVTNVAFLCKDSHLISTG 615 (626)
T ss_pred -ccceeeccccceeEEEEEeeCCceEEecC
Confidence 11112334556678999998888777765
No 121
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=2.6e-22 Score=200.20 Aligned_cols=241 Identities=16% Similarity=0.185 Sum_probs=197.5
Q ss_pred hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCC------------------CcEEEEeCCCCceEEEEe--cC
Q 009993 134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED------------------GFSIASSKPLGCTIRAVA--AD 193 (520)
Q Consensus 134 ~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~------------------~~~~~~~~~~~~~v~~~~--~~ 193 (520)
.+.+...|.+.|+|+.|+|||++||+||.|+.|.||.... .+.+..+.+|...|..+. |+
T Consensus 61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~ 140 (942)
T KOG0973|consen 61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD 140 (942)
T ss_pred hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC
Confidence 3556778999999999999999999999999999998762 135677889999998776 89
Q ss_pred CCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc--CCEEEEEecCCeEEEEECCCCcEEE
Q 009993 194 KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSWDMTVRVWDRALLKCLK 271 (520)
Q Consensus 194 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~v~iwd~~~~~~~~ 271 (520)
+.++++++.|++|.+||..+. .....+.+|.+.|..+.|| |+++++-+.|++|++|++.+..+.+
T Consensus 141 ~~~lvS~s~DnsViiwn~~tF-------------~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k 207 (942)
T KOG0973|consen 141 DSLLVSVSLDNSVIIWNAKTF-------------ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK 207 (942)
T ss_pred ccEEEEecccceEEEEccccc-------------eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE
Confidence 999999999999999998764 3677889999999999995 5899999999999999988877777
Q ss_pred Eee-------eccCEEEE--eeCCCEEEEEc--C---CeEEEEECCCCeeeEEeecccccceEEEEecCC----------
Q 009993 272 VLR-------HSDWVYGL--APHDTTVASTS--G---SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT---------- 327 (520)
Q Consensus 272 ~~~-------~~~~v~~~--~~~~~~l~~~~--d---~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~---------- 327 (520)
.+. .......+ +|+|.+|++.. . ..+.|.+..+.+.-..+. ||..++.++.|+|.
T Consensus 208 ~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv-GH~~p~evvrFnP~lfe~~~~ng~ 286 (942)
T KOG0973|consen 208 SITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV-GHSAPVEVVRFNPKLFERNNKNGT 286 (942)
T ss_pred eeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee-cCCCceEEEEeChHHhccccccCC
Confidence 775 12223333 49999999976 2 458899988877777776 79999999999981
Q ss_pred ---CC----EEEEEeCCCeEEEEEcccCccccceeeeeee-cCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993 328 ---GD----FLFTGGEDGAIHMYEIINDCTEANVLLVATW-IPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 328 ---~~----~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~ 394 (520)
.+ .+|+|+.|++|.||..... +++... .-....|..++|+| -.|+++|.||+|.+..+...
T Consensus 287 ~~~~~~~y~i~AvgSqDrSlSVW~T~~~------RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 287 STQPNCYYCIAAVGSQDRSLSVWNTALP------RPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred ccCCCcceEEEEEecCCccEEEEecCCC------CchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 11 6789999999999998666 333222 22356899999975 58999999999999998753
No 122
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.91 E-value=1.4e-21 Score=189.03 Aligned_cols=244 Identities=18% Similarity=0.224 Sum_probs=197.7
Q ss_pred HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC-cE----EEEeCCCCceEEEEe-cC--CCEEEEEeCCC
Q 009993 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-FS----IASSKPLGCTIRAVA-AD--KKLLVAGGTDG 204 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~-~~----~~~~~~~~~~v~~~~-~~--~~~l~sg~~dg 204 (520)
...+++.+|.+.|.-+. +-|.+++++..++.+.||+..++ +. +...+.....|+++. |. =+.++.|+.+|
T Consensus 105 ~i~~~~~~~~a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G 182 (910)
T KOG1539|consen 105 HIRHTTLLHGAKVHLLL--PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLHPSTYLNKIVVGSSQG 182 (910)
T ss_pred eEEEEeccccceEEEEe--eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEecchhheeeEEEeecCC
Confidence 34667788888888764 35899999999999999999874 22 112223333377776 43 35789999999
Q ss_pred cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCCeEEEEECCCCcEEEEeeec-cCEEE
Q 009993 205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLRHS-DWVYG 281 (520)
Q Consensus 205 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~v~~ 281 (520)
.+.+|+++++ +.+..+.++...|+++.-.+ +.++.|..+|+|.+++++.++.+.++++. +.|++
T Consensus 183 ~lql~Nvrt~-------------K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~Vts 249 (910)
T KOG1539|consen 183 RLQLWNVRTG-------------KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTS 249 (910)
T ss_pred cEEEEEeccC-------------cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeE
Confidence 9999999886 47788899999999998866 77999999999999999999999999986 99999
Q ss_pred Ee--eCCCEEEE-Ec-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeee
Q 009993 282 LA--PHDTTVAS-TS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV 357 (520)
Q Consensus 282 ~~--~~~~~l~~-~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~ 357 (520)
++ .||+.+.+ +. .|.+.+||++..+.+..+...|.+.+....|.|....+++++.|+.+++|=.+++.- .+..+
T Consensus 250 lSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg--~pR~L 327 (910)
T KOG1539|consen 250 LSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDG--VPRLL 327 (910)
T ss_pred EEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCC--cchhe
Confidence 98 45765544 44 699999999999999988888999999999999999999999999998886665422 23566
Q ss_pred eeecCCcCCEEEEEec---CCEEEEEeCCCcEEEEeCCc
Q 009993 358 ATWIPHTGPVNSLAFE---FPWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 358 ~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~ 393 (520)
+.-.||..|..++.|- +.++.+++.|++.+.+++..
T Consensus 328 R~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~ 366 (910)
T KOG1539|consen 328 RSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVIS 366 (910)
T ss_pred eeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhH
Confidence 7778999999999994 46888999999888887753
No 123
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=1.2e-21 Score=185.93 Aligned_cols=321 Identities=18% Similarity=0.238 Sum_probs=234.2
Q ss_pred cCcchhhhhhhhhcCCCCC-CCCCCCCCCCc--ccHHHh-----------------------------------hhhhcc
Q 009993 99 SDHHAWKEFYCERWGLPIA-SAPLGAGFSDD--KSWKEL-----------------------------------IDVLYG 140 (520)
Q Consensus 99 ~~~~lW~~~~~~~~~~~~~-~~~~~~~~~~~--~~W~~~-----------------------------------~~~l~~ 140 (520)
..|..|-+ ...|..+.. .+.+++++.|. ++|+-. -..+.|
T Consensus 188 ~GH~DWIr--sl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~G 265 (764)
T KOG1063|consen 188 EGHTDWIR--SLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMG 265 (764)
T ss_pred eccchhhh--hhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcC
Confidence 46677743 455655555 55566665554 788710 134569
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEE--EE-----eCCCCceEE--EEecCCCEEEEEeCCCcEEEEEc
Q 009993 141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI--AS-----SKPLGCTIR--AVAADKKLLVAGGTDGFIHCWRA 211 (520)
Q Consensus 141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~--~~-----~~~~~~~v~--~~~~~~~~l~sg~~dg~i~vwd~ 211 (520)
|.+.|+++.|+|.+..|+++|.|.++.+|...+..-+ .. ..+....-. -++++++.+++-+..|..++|..
T Consensus 266 HeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt 345 (764)
T KOG1063|consen 266 HEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKT 345 (764)
T ss_pred cccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEec
Confidence 9999999999999999999999999999987654222 11 122222222 24589999999999999999983
Q ss_pred ccCcceeeeccCCccccceEEeccCCCCeEEEEEc--CCEEEEEecCCeEEEEECC-CCcEEEEee----eccCEEEEe-
Q 009993 212 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSWDMTVRVWDRA-LLKCLKVLR----HSDWVYGLA- 283 (520)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~v~iwd~~-~~~~~~~~~----~~~~v~~~~- 283 (520)
.+. ..........||.+.|++++|+ |.+|++.|.|.+-|++-.- ....-+.+. |...++|++
T Consensus 346 ~d~----------~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~ 415 (764)
T KOG1063|consen 346 KDK----------TFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSF 415 (764)
T ss_pred cCc----------cceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeeh
Confidence 332 1123444567999999999995 8999999999999998654 112223332 888888888
Q ss_pred eC-CCEEEEEc-CCeEEEEECCCC---------------e----------------------------e-----------
Q 009993 284 PH-DTTVASTS-GSDVYIWDTNSG---------------C----------------------------L----------- 307 (520)
Q Consensus 284 ~~-~~~l~~~~-d~~i~iwd~~~~---------------~----------------------------~----------- 307 (520)
.+ ...+++|. ...+|+|+.... . .
T Consensus 416 vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~ 495 (764)
T KOG1063|consen 416 VNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAA 495 (764)
T ss_pred ccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccccc
Confidence 33 55666666 567888876420 0 0
Q ss_pred ----------------------eEEeecccccceEEEEecCCCCEEEEEeCCC-----eEEEEEcccCccccceeeeeee
Q 009993 308 ----------------------LTVVNGAHVGNTKSLARSHTGDFLFTGGEDG-----AIHMYEIINDCTEANVLLVATW 360 (520)
Q Consensus 308 ----------------------~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg-----~i~iwd~~~~~~~~~~~~~~~~ 360 (520)
+.++ .||...|++++.+|+++++|+++... .|++|+..+. ..++.+
T Consensus 496 ~p~~L~ePP~EdqLq~~tLwPEv~KL-YGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W------~~~~~L 568 (764)
T KOG1063|consen 496 APCELTEPPTEDQLQQNTLWPEVHKL-YGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW------LQVQEL 568 (764)
T ss_pred CchhccCCChHHHHHHhccchhhHHh-ccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch------hhhhee
Confidence 0111 15888899999999999999988754 4999999888 667789
Q ss_pred cCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EE
Q 009993 361 IPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RI 436 (520)
Q Consensus 361 ~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l 436 (520)
.+|.-.|+.++|+| .+|++.+.|.++.+|........ +........|+.-|++.+|.++ ++
T Consensus 569 ~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~---------------e~~fa~~k~HtRIIWdcsW~pde~~F 633 (764)
T KOG1063|consen 569 EGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKD---------------EFRFACLKAHTRIIWDCSWSPDEKYF 633 (764)
T ss_pred cccceEEEEEEECCCCcEEEEeecCceEEeeeeecccch---------------hhhhccccccceEEEEcccCccccee
Confidence 99999999999976 69999999999999998653211 1112235778888888888776 89
Q ss_pred EEecCCCeEEEEeCCch
Q 009993 437 VCGGEEGIVRIWNFSQA 453 (520)
Q Consensus 437 ~sg~~Dg~v~iwd~~~~ 453 (520)
+|+|.|.+|++|...+.
T Consensus 634 aTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 634 ATASRDKKVKVWEEPDL 650 (764)
T ss_pred EEecCCceEEEEeccCc
Confidence 99999999999999887
No 124
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2e-22 Score=181.73 Aligned_cols=243 Identities=19% Similarity=0.223 Sum_probs=183.1
Q ss_pred CCCEEEEEeCCCcEEEEEcccCc--ceeeeccCCcc------ccceEEeccCCCCeEEEEEcC---CEEEEEecCCeEEE
Q 009993 193 DKKLLVAGGTDGFIHCWRAVEVL--PHLFDISGSEK------QNTQFRLWEHEGPITSLALDL---TRIYSGSWDMTVRV 261 (520)
Q Consensus 193 ~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~~~~~------~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~v~i 261 (520)
.|+++|.|+.|..|.|||+.-.. ...+.+..... ........+|+..|.+++|+. +.|++||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 47799999999999999974321 11111111110 111223447999999999944 67999999999999
Q ss_pred EECCCCcEEEEee-eccCEEEEe---eCCCEEEEEc-CCeEEEEECCCCe-eeEEeecccccceEEEEecCCC-CEEEEE
Q 009993 262 WDRALLKCLKVLR-HSDWVYGLA---PHDTTVASTS-GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTG-DFLFTG 334 (520)
Q Consensus 262 wd~~~~~~~~~~~-~~~~v~~~~---~~~~~l~~~~-d~~i~iwd~~~~~-~~~~~~~~~~~~i~~l~~s~~~-~~l~tg 334 (520)
||+.++++..++. |...|.++. ..+..+++|+ |++|.+.|.+... .-..+. ..+.|..++|.|.. ..++++
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk--~~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK--FDGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE--eccceEEEEecCCCceeEEEe
Confidence 9999999999998 899999998 4577899999 9999999999532 222332 56789999999855 567788
Q ss_pred eCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEec---CCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeee
Q 009993 335 GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE---FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE 411 (520)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 411 (520)
..||+++-+|+|... +++.++..|.++|.+|+++ |.++++++.|+.|++|++........
T Consensus 349 tddG~v~~~D~R~~~-----~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v------------ 411 (463)
T KOG0270|consen 349 TDDGTVYYFDIRNPG-----KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSV------------ 411 (463)
T ss_pred cCCceEEeeecCCCC-----CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccc------------
Confidence 899999999999886 7899999999999999996 57999999999999999975321100
Q ss_pred cCCCcccccCcceeeEEEEecCC---EEEEecCCCeEEEEeCCchHhHHHH
Q 009993 412 VEPPQRMLHGFECNLLSVDIGAD---RIVCGGEEGIVRIWNFSQAFEIERR 459 (520)
Q Consensus 412 ~~~~~~~~~~~~~~v~~~~~~~~---~l~sg~~Dg~v~iwd~~~~~~~~~~ 459 (520)
..+.+. -....|+.++++ .++.||..+.++|||+.+...+++.
T Consensus 412 ---~~~~~~--~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ka 457 (463)
T KOG0270|consen 412 ---KEHSFK--LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKA 457 (463)
T ss_pred ---cccccc--ccceeecccCCCcceEEEecCccceEEEeecccChhHHHh
Confidence 000000 012345555554 8999999999999999998877664
No 125
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.2e-22 Score=181.59 Aligned_cols=228 Identities=21% Similarity=0.310 Sum_probs=183.0
Q ss_pred CEEEEEeC-CCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceE
Q 009993 155 KLLFTSGY-DSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQF 231 (520)
Q Consensus 155 ~~l~sgs~-dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 231 (520)
.+++++.. -..+.+|.+..........--.+++.++. ++|.+|+.|+..|.|++|.+.+|. ...
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~-------------LL~ 117 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGI-------------LLN 117 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEecccc-------------HHH
Confidence 46666644 45788999876655543333455677776 889999999899999999999984 444
Q ss_pred EeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECC---------CCcEEEEee-eccCEEEEe----eCCCEEEEEc-C
Q 009993 232 RLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRA---------LLKCLKVLR-HSDWVYGLA----PHDTTVASTS-G 294 (520)
Q Consensus 232 ~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~---------~~~~~~~~~-~~~~v~~~~----~~~~~l~~~~-d 294 (520)
.+.+|-..|+|+.| |+.+++|||.||.|.+|++. +-+.++.+. |.-+|+.+. .....+++++ |
T Consensus 118 v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D 197 (476)
T KOG0646|consen 118 VLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASED 197 (476)
T ss_pred HHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCC
Confidence 56789999999999 88999999999999999863 234556665 888999987 2345778888 9
Q ss_pred CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcc--c--------cceeeeeeecCCc
Q 009993 295 SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCT--E--------ANVLLVATWIPHT 364 (520)
Q Consensus 295 ~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~--~--------~~~~~~~~~~~h~ 364 (520)
.++++||+..+..+..+. ....+.+++.+|.+..+++|+++|.|.+.++..... . .....+..+.+|.
T Consensus 198 ~t~k~wdlS~g~LLlti~--fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~ 275 (476)
T KOG0646|consen 198 RTIKLWDLSLGVLLLTIT--FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHE 275 (476)
T ss_pred ceEEEEEeccceeeEEEe--cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecccc
Confidence 999999999999998885 678899999999999999999999999998865431 1 1224566788998
Q ss_pred C--CEEEEEe--cCCEEEEEeCCCcEEEEeCCccccc
Q 009993 365 G--PVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRS 397 (520)
Q Consensus 365 ~--~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~ 397 (520)
+ .|+|++. ++..|++|+.||.|.|||+.+.+..
T Consensus 276 ~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~i 312 (476)
T KOG0646|consen 276 NESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCI 312 (476)
T ss_pred CCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHH
Confidence 8 9999998 5789999999999999999885443
No 126
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3e-21 Score=182.92 Aligned_cols=326 Identities=21% Similarity=0.268 Sum_probs=232.4
Q ss_pred hhhhcccc-ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009993 135 IDVLYGHT-EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA 211 (520)
Q Consensus 135 ~~~l~~h~-~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~ 211 (520)
..++.|+. ..|-+++|++ +..|++.+.+|.|.-||+.+++.+..+...+..|.+++ |.+..++.|+.||.+...+.
T Consensus 61 ~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~ 139 (691)
T KOG2048|consen 61 EPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSI 139 (691)
T ss_pred eEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEec
Confidence 44566664 6899999995 55688899999999999999999999999999998877 88899999999997777766
Q ss_pred ccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee---------eccCEE
Q 009993 212 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR---------HSDWVY 280 (520)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---------~~~~v~ 280 (520)
..+. ......+...++.|.+++| ++..+++|+.||.|++||..++..+.... .+.-|+
T Consensus 140 ~p~~-----------I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW 208 (691)
T KOG2048|consen 140 GPDK-----------ITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW 208 (691)
T ss_pred CCce-----------EEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEE
Confidence 5543 1223344456799999999 45668999999999999999998877332 122355
Q ss_pred EEe-eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeee
Q 009993 281 GLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA 358 (520)
Q Consensus 281 ~~~-~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~ 358 (520)
++. -....+++|. .|+|.+||...+..+..+. .|...|.+++..++++++++++.|+.|.-|...+.... .....
T Consensus 209 Sv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~-~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~--wv~~~ 285 (691)
T KOG2048|consen 209 SVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHS-CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE--WVINS 285 (691)
T ss_pred EEEEeecCcEEEecCCceEEEEcccCcchhhhhh-hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc--eeeec
Confidence 555 5666777777 8999999999999999887 59999999999999999999999999999988777432 23444
Q ss_pred eecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEE
Q 009993 359 TWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVC 438 (520)
Q Consensus 359 ~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s 438 (520)
....|...|.+++.-+..+++|+.|..+.+-..+...... ..+.....+ ..+..+++. ++|..
T Consensus 286 ~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~---------------h~~~~~~p~-~~~v~~a~~-~~L~~ 348 (691)
T KOG2048|consen 286 RRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMD---------------HRQKNLFPA-SDRVSVAPE-NRLLV 348 (691)
T ss_pred cccCCcccceeeeeecceEEecceeeEEEEccccccCchh---------------hhccccccc-cceeecCcc-ceEEE
Confidence 5567888999999999999999999999887665421110 001111111 112222222 23333
Q ss_pred ecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCccccccc
Q 009993 439 GGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSV 493 (520)
Q Consensus 439 g~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~ 493 (520)
-=.+..+.+|.+.+...-.+. +...-..+.-...+.....+.||+|..|+...+
T Consensus 349 ~w~~h~v~lwrlGS~~~~g~~-~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~ 402 (691)
T KOG2048|consen 349 LWKAHGVDLWRLGSVILQGEY-NYIHLLKLFTKEKENISCAAISPDGNLIAISTV 402 (691)
T ss_pred EeccccccceeccCccccccc-ChhhheeeecCCccceeeeccCCCCCEEEEeec
Confidence 333455667776654221100 011111122333456788899999999988663
No 127
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=3e-21 Score=165.28 Aligned_cols=279 Identities=19% Similarity=0.290 Sum_probs=195.2
Q ss_pred hccccccEEEEEEcc-CCCEEEEEeCCCeEEEEECCCCcE----------EEE-----eCCCCceEEEEe---cCCCEEE
Q 009993 138 LYGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLEDGFS----------IAS-----SKPLGCTIRAVA---ADKKLLV 198 (520)
Q Consensus 138 l~~h~~~V~~l~~~~-~~~~l~sgs~dg~v~vwd~~~~~~----------~~~-----~~~~~~~v~~~~---~~~~~l~ 198 (520)
.+-|.+.|.++...+ .|+++++|+.||.|.|||+++... +.. -.+|.-.|..+. .|...+.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 457899999999987 589999999999999999975421 110 124555555544 5777889
Q ss_pred EEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-----cCCEEEEEecCCeEEEEECCCCcEEEEe
Q 009993 199 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-----DLTRIYSGSWDMTVRVWDRALLKCLKVL 273 (520)
Q Consensus 199 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-----~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 273 (520)
+++.|.+++|||..+... .......+.|.+-++ .-.++++|..|-.|++-|+.+|.+.+++
T Consensus 119 ssSFDhtlKVWDtnTlQ~--------------a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L 184 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQE--------------AVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL 184 (397)
T ss_pred cccccceEEEeeccccee--------------eEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee
Confidence 999999999999877531 111223445555555 3356888889999999999999999999
Q ss_pred e-eccCEEEEe--eCCC-EEEEEc-CCeEEEEECCCC-eeeEEe-------------ecccccceEEEEecCCCCEEEEE
Q 009993 274 R-HSDWVYGLA--PHDT-TVASTS-GSDVYIWDTNSG-CLLTVV-------------NGAHVGNTKSLARSHTGDFLFTG 334 (520)
Q Consensus 274 ~-~~~~v~~~~--~~~~-~l~~~~-d~~i~iwd~~~~-~~~~~~-------------~~~~~~~i~~l~~s~~~~~l~tg 334 (520)
. |.+.|.++. |... .|++|+ ||.|++||++.. .+...+ ..+|.+.++.++|+.++.+++++
T Consensus 185 sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~ 264 (397)
T KOG4283|consen 185 SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASC 264 (397)
T ss_pred ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhc
Confidence 8 999999998 4444 466677 999999999864 222211 23688899999999999999999
Q ss_pred eCCCeEEEEEcccCccccc-e-eeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeec
Q 009993 335 GEDGAIHMYEIINDCTEAN-V-LLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEV 412 (520)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~-~-~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 412 (520)
+.|..+++|+...+..... . +....-..|. .+.--..+...++---.++.+.++++-.
T Consensus 265 gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~-~~~~~~~~s~vfv~~p~~~~lall~~~s------------------- 324 (397)
T KOG4283|consen 265 GTDDRIRVWNMESGRNTLREFGPIIHNQTTSF-AVHIQSMDSDVFVLFPNDGSLALLNLLE------------------- 324 (397)
T ss_pred cCccceEEeecccCcccccccccccccccccc-eEEEeecccceEEEEecCCeEEEEEccC-------------------
Confidence 9999999999988743110 0 0000000010 1110011233444444557777777765
Q ss_pred CCCcccccCcceeeEEEEecCC--EEEEecCCCeEEEEeC
Q 009993 413 EPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNF 450 (520)
Q Consensus 413 ~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~ 450 (520)
....+.+.+|...+.|..+.++ ...+|+.|+.|..|-.
T Consensus 325 gs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 325 GSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 2334455666667777777776 8999999999999986
No 128
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=4.9e-21 Score=165.00 Aligned_cols=257 Identities=16% Similarity=0.213 Sum_probs=183.1
Q ss_pred CCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE----cCCEEEEEec
Q 009993 182 PLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGSW 255 (520)
Q Consensus 182 ~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~ 255 (520)
+|..-|.+++ +.|+.+++|+.|++|+|||..... ...........|.+.|..+.| -|+.+++++.
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s---------~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~ 81 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS---------GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY 81 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCC---------CceEEeeeEEecCCcEEEEEecCccccceEEEEec
Confidence 5667777766 789999999999999999975442 335566777889999999999 4577999999
Q ss_pred CCeEEEEECCC---------CcEEEEee-eccCEEEEe----eCCCEEEEEc-CCeEEEEECCCCeeeEE------ee--
Q 009993 256 DMTVRVWDRAL---------LKCLKVLR-HSDWVYGLA----PHDTTVASTS-GSDVYIWDTNSGCLLTV------VN-- 312 (520)
Q Consensus 256 dg~v~iwd~~~---------~~~~~~~~-~~~~v~~~~----~~~~~l~~~~-d~~i~iwd~~~~~~~~~------~~-- 312 (520)
|+++.||.-.. .....++. ....|+.+. ..|-.+++++ ||.++||+....-.+.. +.
T Consensus 82 Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~ 161 (361)
T KOG2445|consen 82 DRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV 161 (361)
T ss_pred CCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhc
Confidence 99999997521 11222333 567788777 3467788888 99999998765322221 11
Q ss_pred ----cccccceEEEEecCC---CCEEEEEeCC-----CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC------
Q 009993 313 ----GAHVGNTKSLARSHT---GDFLFTGGED-----GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF------ 374 (520)
Q Consensus 313 ----~~~~~~i~~l~~s~~---~~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~------ 374 (520)
..+..+..|+.|+|. ..+|++|+.+ +.++||...... .....+.++.+|..+|++|+|.|
T Consensus 162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~--rKw~kva~L~d~~dpI~di~wAPn~Gr~y 239 (361)
T KOG2445|consen 162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG--RKWLKVAELPDHTDPIRDISWAPNIGRSY 239 (361)
T ss_pred cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc--ceeeeehhcCCCCCcceeeeeccccCCce
Confidence 235567789999873 4578888776 578999876663 23356777889999999999987
Q ss_pred CEEEEEeCCCcEEEEeCCcccccCC---CCCCCceeeeeecCCCcccccCcceeeEEEEec--CCEEEEecCCCeEEEEe
Q 009993 375 PWLVSAAGDGKLSLIDVRKLLRSGR---PTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVCGGEEGIVRIWN 449 (520)
Q Consensus 375 ~~l~s~s~dg~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~Dg~v~iwd 449 (520)
..|++++.|| |+||.+........ .........+ .-.....+.+|.+.|+.+.++ |..|++.|.||+||+|.
T Consensus 240 ~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l--~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 240 HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDL--PVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCcccc--ceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence 4899999999 99999985321110 0000000000 011233467899999988876 56999999999999998
Q ss_pred CCc
Q 009993 450 FSQ 452 (520)
Q Consensus 450 ~~~ 452 (520)
..-
T Consensus 317 any 319 (361)
T KOG2445|consen 317 ANY 319 (361)
T ss_pred hhh
Confidence 653
No 129
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=6.1e-22 Score=186.16 Aligned_cols=256 Identities=15% Similarity=0.183 Sum_probs=185.2
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEE--eCCCCceEEEEe---cCCCEEEEEeCCCcEEEE
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIAS--SKPLGCTIRAVA---ADKKLLVAGGTDGFIHCW 209 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~--~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vw 209 (520)
+.....|..+|..+.|.|....|++++.|.++++||+.+++.+.. +.+|...+.+++ .+...+++|+.||.|.||
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 445668999999999999778999999999999999999988876 889999887665 567789999999999999
Q ss_pred EcccCccee--------eeccCC------ccccceEEeccCCC----CeEEEEE-cCCEEEEEec-CCeEEEEECCCCcE
Q 009993 210 RAVEVLPHL--------FDISGS------EKQNTQFRLWEHEG----PITSLAL-DLTRIYSGSW-DMTVRVWDRALLKC 269 (520)
Q Consensus 210 d~~~~~~~~--------~~~~~~------~~~~~~~~~~~h~~----~v~~l~~-~~~~l~s~s~-dg~v~iwd~~~~~~ 269 (520)
|++...... +..... ........-..+.. .|+.+.| |...|++++. |+.|+|||++....
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence 986543211 100000 00011112223333 4556777 8899999988 99999999987655
Q ss_pred EEEee---------e---ccCEEEEe--eCCCEEEE-EcCCeEEEEECCCCe--eeEEeeccccc--ceEEEEecCCCCE
Q 009993 270 LKVLR---------H---SDWVYGLA--PHDTTVAS-TSGSDVYIWDTNSGC--LLTVVNGAHVG--NTKSLARSHTGDF 330 (520)
Q Consensus 270 ~~~~~---------~---~~~v~~~~--~~~~~l~~-~~d~~i~iwd~~~~~--~~~~~~~~~~~--~i~~l~~s~~~~~ 330 (520)
..... + ...+.++. ..|.++++ |.|+.|+.||+.+-. ++..+. ++.. .-..-..+|++.+
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s-g~~~~sf~vks~lSpd~~~ 331 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFS-GKLNSSFYVKSELSPDDCS 331 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhcc-CcccceeeeeeecCCCCce
Confidence 44332 2 12344444 44565555 449999999998643 333332 2221 1123356899999
Q ss_pred EEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcccc
Q 009993 331 LFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLR 396 (520)
Q Consensus 331 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~ 396 (520)
+++|+.|...++|.+.+.. .....+.+|.-.|++++|.| .-++++++|..+++|++..+..
T Consensus 332 l~SgSsd~~ayiw~vs~~e-----~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 332 LLSGSSDEQAYIWVVSSPE-----APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLE 395 (720)
T ss_pred EeccCCCcceeeeeecCcc-----CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchh
Confidence 9999999999999999885 45666789999999999976 4678889999999999976543
No 130
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=6.9e-21 Score=164.76 Aligned_cols=289 Identities=17% Similarity=0.178 Sum_probs=195.1
Q ss_pred EEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cC-CEEEE
Q 009993 178 ASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DL-TRIYS 252 (520)
Q Consensus 178 ~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~s 252 (520)
..+++|...|++++ .||++|++++.|++|++|++++-... +.......+ .-+..+.+.| |- ..+++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~-------eHr~~R~nv--e~dhpT~V~FapDc~s~vv~ 150 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENK-------EHRCIRQNV--EYDHPTRVVFAPDCKSVVVS 150 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhh-------hhhHhhccc--cCCCceEEEECCCcceEEEE
Confidence 35678888877655 89999999999999999998763211 000011111 1224456677 22 44666
Q ss_pred EecCCeEEEEECCCC---cEEEE--------ee--eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccc
Q 009993 253 GSWDMTVRVWDRALL---KCLKV--------LR--HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHV 316 (520)
Q Consensus 253 ~s~dg~v~iwd~~~~---~~~~~--------~~--~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~ 316 (520)
+-...++++|-+... ..... +. |...+..+- ..+.++++++ |.+|.+|+++ |+.+..+.. ..
T Consensus 151 ~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt-nq 228 (420)
T KOG2096|consen 151 VKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT-NQ 228 (420)
T ss_pred EccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc-cc
Confidence 666678999876422 11111 11 444444443 6788999999 9999999999 888888863 55
Q ss_pred cceEEEEecCCCCEEEEEeCCCeEEEEEcccCc--cccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCC
Q 009993 317 GNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC--TEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR 392 (520)
Q Consensus 317 ~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~ 392 (520)
..-+..+.+|+|+++++++..-.|++|.+--.. .-.+...+..+.+|...|..++|++ ..+++.+.||+++|||..
T Consensus 229 ~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 229 SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred ccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 666778899999999999999999999974332 1233456778999999999999976 699999999999999987
Q ss_pred cccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhh
Q 009993 393 KLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRM 472 (520)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 472 (520)
-......-. . +....+......+...--++++|+++.|+.... ..++++..+++.....+.....+
T Consensus 309 VrY~~~qDp-----k-~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~------- 374 (420)
T KOG2096|consen 309 VRYEAGQDP-----K-ILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHST------- 374 (420)
T ss_pred ceEecCCCc-----h-HhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcC-------
Confidence 432221100 0 000010000111222235677788887666553 56999999998877765555433
Q ss_pred hhccceeeeccCCCccccccc
Q 009993 473 RRRKLQTEMSSKGGRTDQCSV 493 (520)
Q Consensus 473 ~~~~~~~~~s~~g~~~~~~s~ 493 (520)
.+..++|+++|+++++|.-
T Consensus 375 --~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 375 --TISSISYSSDGKYIATCGD 393 (420)
T ss_pred --ceeeEEecCCCcEEeeecc
Confidence 4789999999999999873
No 131
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.1e-21 Score=190.91 Aligned_cols=200 Identities=20% Similarity=0.303 Sum_probs=164.7
Q ss_pred HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe---cCCCEEEEEeCCCcEEEE
Q 009993 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCW 209 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vw 209 (520)
+.++.|+||++.|..+.|+. .++|+++|.|.|||+|++...++++.|. |...|+|+. .|.+++++|+.||.|+||
T Consensus 360 kP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiW 437 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLW 437 (712)
T ss_pred cchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEe
Confidence 44889999999999999996 4589999999999999999999999886 888888887 578899999999999999
Q ss_pred EcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee---e------ccC
Q 009993 210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR---H------SDW 278 (520)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~------~~~ 278 (520)
++... .+.....-..-|++++| +|++.+.|+.+|.+++|++...+...... + ...
T Consensus 438 sI~d~--------------~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~r 503 (712)
T KOG0283|consen 438 SISDK--------------KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKR 503 (712)
T ss_pred ecCcC--------------eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCce
Confidence 98654 23333444588999999 99999999999999999998877665543 1 237
Q ss_pred EEEEe--e-CC-CEEEEEcCCeEEEEECCCCeeeEEeeccccc-ceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993 279 VYGLA--P-HD-TTVASTSGSDVYIWDTNSGCLLTVVNGAHVG-NTKSLARSHTGDFLFTGGEDGAIHMYEIIND 348 (520)
Q Consensus 279 v~~~~--~-~~-~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~ 348 (520)
|+++. | +. +.|++..|..|+|||.++..++..+++.+.. .-....|+.||++|+++++|..|++|+....
T Consensus 504 ITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 504 ITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred eeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 99988 2 22 3666666999999999998888888754433 2346679999999999999999999998554
No 132
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=4.9e-22 Score=165.69 Aligned_cols=252 Identities=20% Similarity=0.214 Sum_probs=186.0
Q ss_pred CCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-c---CCEEEEEec
Q 009993 182 PLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-D---LTRIYSGSW 255 (520)
Q Consensus 182 ~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~---~~~l~s~s~ 255 (520)
.|...|.... .-|++|+|++.|++|+|+.++.+. .......+.||.++|..++| + |+.|++++.
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~----------~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsY 78 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG----------QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSY 78 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCC----------CceeeeEecCCCCCeeEEeecccccCcEeeEeec
Confidence 4666665544 668999999999999999987653 23567889999999999999 4 578999999
Q ss_pred CCeEEEEECCCCcEEEEeeeccCEEEEeeCCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCC--CCEEEE
Q 009993 256 DMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT--GDFLFT 333 (520)
Q Consensus 256 dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~--~~~l~t 333 (520)
||.|.||.-.+++-.+ .... ..|...|++++|.|. |-.|++
T Consensus 79 DgkVIiWke~~g~w~k------------------------------------~~e~-~~h~~SVNsV~wapheygl~Lac 121 (299)
T KOG1332|consen 79 DGKVIIWKEENGRWTK------------------------------------AYEH-AAHSASVNSVAWAPHEYGLLLAC 121 (299)
T ss_pred CceEEEEecCCCchhh------------------------------------hhhh-hhhcccceeecccccccceEEEE
Confidence 9999999977663221 1112 258999999999885 458999
Q ss_pred EeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC----------------CEEEEEeCCCcEEEEeCCccccc
Q 009993 334 GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF----------------PWLVSAAGDGKLSLIDVRKLLRS 397 (520)
Q Consensus 334 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----------------~~l~s~s~dg~i~vwd~~~~~~~ 397 (520)
++.||.|.|.+.+....- ........|.-.|++++|.| ..|++|+.|..|+||+..+..
T Consensus 122 asSDG~vsvl~~~~~g~w---~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~-- 196 (299)
T KOG1332|consen 122 ASSDGKVSVLTYDSSGGW---TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS-- 196 (299)
T ss_pred eeCCCcEEEEEEcCCCCc---cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc--
Confidence 999999999998876211 22334567999999999954 369999999999999998741
Q ss_pred CCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC------EEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchh
Q 009993 398 GRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD------RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENR 471 (520)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 471 (520)
-...+.+.+|..-|..+++.+. .||+++.||+|.||..+...+..+. .+.+.
T Consensus 197 ---------------w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~-------tll~~ 254 (299)
T KOG1332|consen 197 ---------------WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKK-------TLLEE 254 (299)
T ss_pred ---------------hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccc-------ccccc
Confidence 2233447899999988887764 8999999999999988743222111 11222
Q ss_pred hhhccceeeeccCCCcccccccccccCCCCCCcceeeecccCCCCc
Q 009993 472 MRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMSGK 517 (520)
Q Consensus 472 ~~~~~~~~~~s~~g~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (520)
.......+.||..|..|+.+. +-+...+|.- ..+||
T Consensus 255 f~~~~w~vSWS~sGn~LaVs~--------GdNkvtlwke--~~~Gk 290 (299)
T KOG1332|consen 255 FPDVVWRVSWSLSGNILAVSG--------GDNKVTLWKE--NVDGK 290 (299)
T ss_pred CCcceEEEEEeccccEEEEec--------CCcEEEEEEe--CCCCc
Confidence 333467889999999888765 3344577765 34444
No 133
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=6.6e-20 Score=173.54 Aligned_cols=264 Identities=14% Similarity=0.056 Sum_probs=180.2
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeCCCCc-eEEEEecCCCEE-EEEeCCCcEEEEEcccCcceeeeccCCccccceE
Q 009993 154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC-TIRAVAADKKLL-VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQF 231 (520)
Q Consensus 154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 231 (520)
+.++++++.|+.|++||+.+++.+..+..+.. ...++++++..+ ++++.++.|++||..++. ...
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~-------------~~~ 67 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGE-------------VIG 67 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCc-------------EEE
Confidence 35788999999999999999988888775543 335667888876 567788999999987753 122
Q ss_pred EeccCCCCeEEEEE--cCCEEEE-EecCCeEEEEECCCCcEEEEeeeccCEEEE--eeCCCEEEEEc-C-CeEEEEECCC
Q 009993 232 RLWEHEGPITSLAL--DLTRIYS-GSWDMTVRVWDRALLKCLKVLRHSDWVYGL--APHDTTVASTS-G-SDVYIWDTNS 304 (520)
Q Consensus 232 ~~~~h~~~v~~l~~--~~~~l~s-~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~-d-~~i~iwd~~~ 304 (520)
.+..+.. +..+++ +++.+++ ++.|+.+++||+.+.+.+..+.....+.++ .+++..++++. + ..+.+||.++
T Consensus 68 ~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~ 146 (300)
T TIGR03866 68 TLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT 146 (300)
T ss_pred eccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCC
Confidence 2323322 455667 5666654 456899999999998888777644444444 48999998888 4 3577889998
Q ss_pred CeeeEEeecccccceEEEEecCCCCEEEEE-eCCCeEEEEEcccCccccceeeeeeecCC-------cCCEEEEEecC--
Q 009993 305 GCLLTVVNGAHVGNTKSLARSHTGDFLFTG-GEDGAIHMYEIINDCTEANVLLVATWIPH-------TGPVNSLAFEF-- 374 (520)
Q Consensus 305 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~~~-- 374 (520)
++...... ....+..++|+|++++++++ ..++.|++||+.++. .+..+..+ ......+.|+|
T Consensus 147 ~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~s~dg 218 (300)
T TIGR03866 147 YEIVDNVL--VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK------VIKKITFEIPGVHPEAVQPVGIKLTKDG 218 (300)
T ss_pred CeEEEEEE--cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce------eeeeeeecccccccccCCccceEECCCC
Confidence 87766554 23356789999999988654 469999999999873 33332211 11234677765
Q ss_pred CEE-EEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEe-cCCCeEEEEeCCc
Q 009993 375 PWL-VSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCG-GEEGIVRIWNFSQ 452 (520)
Q Consensus 375 ~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg-~~Dg~v~iwd~~~ 452 (520)
+++ ++.+.++.|.+||+.+..... ....++.....++++++++|+++ +.+|.|++||+.+
T Consensus 219 ~~~~~~~~~~~~i~v~d~~~~~~~~------------------~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 219 KTAFVALGPANRVAVVDAKTYEVLD------------------YLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred CEEEEEcCCCCeEEEEECCCCcEEE------------------EEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 454 444567789999997642110 01123333345566677787775 5699999999998
Q ss_pred hHhHH
Q 009993 453 AFEIE 457 (520)
Q Consensus 453 ~~~~~ 457 (520)
++.+.
T Consensus 281 ~~~~~ 285 (300)
T TIGR03866 281 LKVIK 285 (300)
T ss_pred CcEEE
Confidence 75543
No 134
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=3.3e-23 Score=197.18 Aligned_cols=216 Identities=24% Similarity=0.396 Sum_probs=183.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceE
Q 009993 154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQF 231 (520)
Q Consensus 154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 231 (520)
..++..+..+-.+++||... +..|...+-++. ..++.+++|+.|..+.+|.+... ....
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp-------------~~i~ 64 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP-------------NAIT 64 (825)
T ss_pred ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCC-------------chhh
Confidence 44455666666788888653 334555555554 66788999999999999987543 2444
Q ss_pred EeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCC
Q 009993 232 RLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSG 305 (520)
Q Consensus 232 ~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~ 305 (520)
.+.+|..+|.++.| +...|++|+.+|+|++||++..+.++++. |...+.++. |.+.+.+.|+ |+.+.+||.+..
T Consensus 65 S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~ 144 (825)
T KOG0267|consen 65 SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK 144 (825)
T ss_pred eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc
Confidence 68899999999999 45779999999999999999999888886 777887777 7888888899 999999999988
Q ss_pred eeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCC
Q 009993 306 CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGD 383 (520)
Q Consensus 306 ~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~d 383 (520)
.+...+. +|...+..+.|+|+|++++.|++|..++|||...+ +....|..|.+.+.++.|+| -.+++|+.|
T Consensus 145 Gc~~~~~-s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag------k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d 217 (825)
T KOG0267|consen 145 GCSHTYK-SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG------KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSD 217 (825)
T ss_pred Cceeeec-CCcceeEEEeecCCCceeeccCCcceeeeeccccc------ccccccccccccccccccCchhhhhccCCCC
Confidence 8998887 49999999999999999999999999999999999 78899999999999999988 478899999
Q ss_pred CcEEEEeCCccc
Q 009993 384 GKLSLIDVRKLL 395 (520)
Q Consensus 384 g~i~vwd~~~~~ 395 (520)
++|++||+++..
T Consensus 218 ~tv~f~dletfe 229 (825)
T KOG0267|consen 218 RTVRFWDLETFE 229 (825)
T ss_pred ceeeeeccceeE
Confidence 999999999753
No 135
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.7e-22 Score=192.52 Aligned_cols=230 Identities=18% Similarity=0.266 Sum_probs=186.0
Q ss_pred EEEEcc-CCCEEEEEeCCCeEEEEECCC---CcEEEEeCCCCceEEEEe---cCCCEEEEEeCCCcEEEEEcccCcceee
Q 009993 147 TVFVLA-SAKLLFTSGYDSIVRMWHLED---GFSIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWRAVEVLPHLF 219 (520)
Q Consensus 147 ~l~~~~-~~~~l~sgs~dg~v~vwd~~~---~~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 219 (520)
.|+|.. +.++|||++..|.|.+||+.. .+.+..|..|.-.+.++. ...++|++|+.||+|++||++...
T Consensus 92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~---- 167 (839)
T KOG0269|consen 92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK---- 167 (839)
T ss_pred hcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc----
Confidence 445542 568999999999999999987 556667888988888776 567899999999999999997653
Q ss_pred eccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCC-cEEEEee-eccCEEEEe--eCCCEEEEE
Q 009993 220 DISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALL-KCLKVLR-HSDWVYGLA--PHDTTVAST 292 (520)
Q Consensus 220 ~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~-~~~~v~~~~--~~~~~l~~~ 292 (520)
....+.+....|+++.| .+++++++...|.+++||++.. ++...+. |.++|.|+. |++.+||+|
T Consensus 168 ---------S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATG 238 (839)
T KOG0269|consen 168 ---------SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATG 238 (839)
T ss_pred ---------ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeec
Confidence 44456667889999999 6688999999999999999865 3444454 999999998 999999999
Q ss_pred c-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCC-EEEEEeC--CCeEEEEEcccCccccceeeeeeecCCcCCEE
Q 009993 293 S-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD-FLFTGGE--DGAIHMYEIINDCTEANVLLVATWIPHTGPVN 368 (520)
Q Consensus 293 ~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~-~l~tg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~ 368 (520)
+ |+.|+|||..+++......-....++.++.|-|... .|++++. |-.|+|||++.+- .+..++..|+..++
T Consensus 239 GRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY-----IP~~t~~eH~~~vt 313 (839)
T KOG0269|consen 239 GRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY-----IPYATFLEHTDSVT 313 (839)
T ss_pred CCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccc-----ccceeeeccCcccc
Confidence 9 999999999876543332222567899999999765 4666554 7789999998874 67888999999999
Q ss_pred EEEec---CCEEEEEeCCCcEEEEeCCcc
Q 009993 369 SLAFE---FPWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 369 ~l~~~---~~~l~s~s~dg~i~vwd~~~~ 394 (520)
.++|. +..+.+++.||+|..-.+++.
T Consensus 314 ~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 314 GIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 99994 468999999999877666543
No 136
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=4.4e-22 Score=181.94 Aligned_cols=251 Identities=20% Similarity=0.290 Sum_probs=200.9
Q ss_pred CCCCCCCCCcccHHH-------hhhhhc--cccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEE--EEeCC--CCc
Q 009993 119 APLGAGFSDDKSWKE-------LIDVLY--GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI--ASSKP--LGC 185 (520)
Q Consensus 119 ~~~~~~~~~~~~W~~-------~~~~l~--~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~--~~~~~--~~~ 185 (520)
.....|..-.++|+- .+..|. ....-|.++.+.|||+.|++|++-.++.|||+...... ..+.. ..+
T Consensus 433 hVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaC 512 (705)
T KOG0639|consen 433 HVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 512 (705)
T ss_pred eeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhh
Confidence 344456667799981 122222 23567899999999999999999999999999765432 22332 344
Q ss_pred eEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEE
Q 009993 186 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWD 263 (520)
Q Consensus 186 ~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd 263 (520)
...+++||.+..+++..||.|.|||+.+. ..+..+.||.+.+.||.+ +|..|.+|+-|.+|+-||
T Consensus 513 yALa~spDakvcFsccsdGnI~vwDLhnq-------------~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWD 579 (705)
T KOG0639|consen 513 YALAISPDAKVCFSCCSDGNIAVWDLHNQ-------------TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWD 579 (705)
T ss_pred hhhhcCCccceeeeeccCCcEEEEEcccc-------------eeeecccCCCCCceeEEecCCCceeecCCCccceeehh
Confidence 44556699999999999999999999663 477889999999999999 689999999999999999
Q ss_pred CCCCcEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeE
Q 009993 264 RALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI 340 (520)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i 340 (520)
+++++.+........|.++. |.+.++++|- ++.+.+......+... +. -|.+.|.++.|.+.|+++++.+.|..+
T Consensus 580 lregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyq-lh-lheScVLSlKFa~cGkwfvStGkDnlL 657 (705)
T KOG0639|consen 580 LREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQ-LH-LHESCVLSLKFAYCGKWFVSTGKDNLL 657 (705)
T ss_pred hhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCcccee-ec-ccccEEEEEEecccCceeeecCchhhh
Confidence 99999888888889999987 9999999999 7888888766544433 32 489999999999999999999999999
Q ss_pred EEEEcccCccccceeeeeeecCCcCCEEEEEe--cCCEEEEEeCCCcEEEEeC
Q 009993 341 HMYEIINDCTEANVLLVATWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDV 391 (520)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~ 391 (520)
..|....+ ..+.... ..+.|.++.. +.++++||+.|....||.+
T Consensus 658 nawrtPyG------asiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 658 NAWRTPYG------ASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred hhccCccc------cceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 99998888 3333332 3456777665 5689999999998888875
No 137
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.88 E-value=2e-21 Score=178.33 Aligned_cols=260 Identities=15% Similarity=0.149 Sum_probs=187.9
Q ss_pred CCCCCCCCCcccHH--------Hhhhhh-ccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEE-----------
Q 009993 119 APLGAGFSDDKSWK--------ELIDVL-YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA----------- 178 (520)
Q Consensus 119 ~~~~~~~~~~~~W~--------~~~~~l-~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~----------- 178 (520)
+..++-+.+.+.|+ ...+.| ..-...|.+++|++.|..|++.+.....+|+|-...+...
T Consensus 182 ~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm 261 (641)
T KOG0772|consen 182 FVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDM 261 (641)
T ss_pred eeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhh
Confidence 33344466678998 223333 2344578999999999999999989999999965433222
Q ss_pred -EeCCCCceEEEEe--c-CCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEE
Q 009993 179 -SSKPLGCTIRAVA--A-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYS 252 (520)
Q Consensus 179 -~~~~~~~~v~~~~--~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s 252 (520)
..++|...+++-+ | +...++|++.||++++||+........ ........+..-++++.+| +++.|++
T Consensus 262 ~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q-------Vik~k~~~g~Rv~~tsC~~nrdg~~iAa 334 (641)
T KOG0772|consen 262 YNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ-------VIKTKPAGGKRVPVTSCAWNRDGKLIAA 334 (641)
T ss_pred hccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee-------EEeeccCCCcccCceeeecCCCcchhhh
Confidence 2367877777655 4 455899999999999999876532110 0011111234567888899 7889999
Q ss_pred EecCCeEEEEECCCCcE--EEEee--ecc--CEEEEe--eCCCEEEEEc-CCeEEEEECCCCe-eeEEeec-ccccceEE
Q 009993 253 GSWDMTVRVWDRALLKC--LKVLR--HSD--WVYGLA--PHDTTVASTS-GSDVYIWDTNSGC-LLTVVNG-AHVGNTKS 321 (520)
Q Consensus 253 ~s~dg~v~iwd~~~~~~--~~~~~--~~~--~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~-~~~~~~~-~~~~~i~~ 321 (520)
|+.||.|.+|+...... ...++ |.. .|+|+. ++|++|++-+ |+++++||++..+ ++..... ....+-+.
T Consensus 335 gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~td 414 (641)
T KOG0772|consen 335 GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTD 414 (641)
T ss_pred cccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCc
Confidence 99999999999754432 22222 655 788887 8999999988 9999999999764 3333321 12335578
Q ss_pred EEecCCCCEEEEEeC------CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeC
Q 009993 322 LARSHTGDFLFTGGE------DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDV 391 (520)
Q Consensus 322 l~~s~~~~~l~tg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~ 391 (520)
++|||+.++|++|.. .|++.+||..+- ..++.+.-....|..+.|+| +.|+.|+.||.++||=-
T Consensus 415 c~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~------d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 415 CCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL------DTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred cccCCCceEEEecccccCCCCCceEEEEeccce------eeEEEecCCCceEEEEeecchhhheeeecCCCceEEEEC
Confidence 899999999999864 578999998887 56777766688899999999 68999999999998743
No 138
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=9.9e-20 Score=172.73 Aligned_cols=278 Identities=20% Similarity=0.242 Sum_probs=215.4
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC-cEEEEeCCCC-ceEEEEe-cCCCEEEEEeCCCcEEEEEcccCcc
Q 009993 140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-FSIASSKPLG-CTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLP 216 (520)
Q Consensus 140 ~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~-~~~~~~~~~~-~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~ 216 (520)
--..+|.+|||+.+.+.||.+-.||.|-+|++..+ -+...+.++. ..|-+++ .++..|++.+.+|.|.-||+.++.
T Consensus 23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk- 101 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLK- 101 (691)
T ss_pred eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCc-
Confidence 34578999999999999999999999999999875 3344455543 3455555 368889999999999999998763
Q ss_pred eeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee---eccCEEEEe--eCCCEE
Q 009993 217 HLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLA--PHDTTV 289 (520)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~--~~~~~l 289 (520)
....+....+.|.+++. .+..++.|+.||.+..++...++...... ..+.|.+++ +++..+
T Consensus 102 ------------~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i 169 (691)
T KOG2048|consen 102 ------------QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKI 169 (691)
T ss_pred ------------eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEE
Confidence 45566677899999999 45789999999988888887776655443 668899998 777888
Q ss_pred EEEc-CCeEEEEECCCCeeeEEee-------cccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec
Q 009993 290 ASTS-GSDVYIWDTNSGCLLTVVN-------GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI 361 (520)
Q Consensus 290 ~~~~-d~~i~iwd~~~~~~~~~~~-------~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 361 (520)
++|+ ||.|++||..++..+.... .+...-|+++.|-. ...|++|..-|+|.+||...+ ..+..+.
T Consensus 170 ~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd~~~g------TLiqS~~ 242 (691)
T KOG2048|consen 170 AGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWDSIFG------TLIQSHS 242 (691)
T ss_pred EecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEEEcccCc------chhhhhh
Confidence 9999 9999999999998776322 11233577888774 457899999999999999999 7888899
Q ss_pred CCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEe
Q 009993 362 PHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCG 439 (520)
Q Consensus 362 ~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg 439 (520)
.|.+.|.+++.++ +++++++.|+.|.-+...+..... +....+.+++| .+.+++.-+..+++|
T Consensus 243 ~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~w-------------v~~~~r~~h~h--dvrs~av~~~~l~sg 307 (691)
T KOG2048|consen 243 CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEW-------------VINSRRDLHAH--DVRSMAVIENALISG 307 (691)
T ss_pred hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccce-------------eeeccccCCcc--cceeeeeecceEEec
Confidence 9999999999964 799999999999999887642210 01122334444 455555556799999
Q ss_pred cCCCeEEEEeCCc
Q 009993 440 GEEGIVRIWNFSQ 452 (520)
Q Consensus 440 ~~Dg~v~iwd~~~ 452 (520)
|.|+++.+-....
T Consensus 308 G~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 308 GRDFTLAICSSRE 320 (691)
T ss_pred ceeeEEEEccccc
Confidence 9999999876654
No 139
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.88 E-value=5.1e-20 Score=174.94 Aligned_cols=304 Identities=23% Similarity=0.345 Sum_probs=222.4
Q ss_pred hhhhhccccccEEEEEEccCCC---EEEEEeCCCeEEEEECCCC--cEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEE
Q 009993 134 LIDVLYGHTEAVLTVFVLASAK---LLFTSGYDSIVRMWHLEDG--FSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHC 208 (520)
Q Consensus 134 ~~~~l~~h~~~V~~l~~~~~~~---~l~sgs~dg~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~v 208 (520)
...++.||.++|+|+.|-|+.+ ++++|+.|+.|++|.++.. ..+.++++|...+.|+..........+.|+++.+
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~v 125 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSV 125 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEE
Confidence 4667899999999999999877 8999999999999999843 3566778888999998866555555588999999
Q ss_pred EEcccCccee-----------------------------------eec--cCCccccceEEeccCCCCeEEEEE-----c
Q 009993 209 WRAVEVLPHL-----------------------------------FDI--SGSEKQNTQFRLWEHEGPITSLAL-----D 246 (520)
Q Consensus 209 wd~~~~~~~~-----------------------------------~~~--~~~~~~~~~~~~~~h~~~v~~l~~-----~ 246 (520)
||.+..+... ..+ ....+......+.||.+.|.+++| +
T Consensus 126 w~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~ 205 (764)
T KOG1063|consen 126 WDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGD 205 (764)
T ss_pred eecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCC
Confidence 9984443100 000 012234566778899999999999 2
Q ss_pred CCEEEEEecCCeEEEEECCCCc---------------------EE---E-E------e-eeccCEEEEe--eCCCEEEEE
Q 009993 247 LTRIYSGSWDMTVRVWDRALLK---------------------CL---K-V------L-RHSDWVYGLA--PHDTTVAST 292 (520)
Q Consensus 247 ~~~l~s~s~dg~v~iwd~~~~~---------------------~~---~-~------~-~~~~~v~~~~--~~~~~l~~~ 292 (520)
.-+|+++|.|..||+|.+.-+. .. . . + .|.++|+++. |.+..|+++
T Consensus 206 ~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSA 285 (764)
T KOG1063|consen 206 DLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSA 285 (764)
T ss_pred cEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheec
Confidence 3468999999999999764221 11 1 0 1 2899999998 677677777
Q ss_pred c-CCeEEEEECCCCeee--EEee----cccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcC
Q 009993 293 S-GSDVYIWDTNSGCLL--TVVN----GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG 365 (520)
Q Consensus 293 ~-d~~i~iwd~~~~~~~--~~~~----~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 365 (520)
+ |.++.+|...+..-+ .... .+..+......|+|+++.+++-+.-|..++|...+. ..........||.+
T Consensus 286 SaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~---~~w~~~~~iSGH~~ 362 (764)
T KOG1063|consen 286 SADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK---TFWTQEPVISGHVD 362 (764)
T ss_pred ccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCc---cceeeccccccccc
Confidence 7 999999988765221 1111 123456889999999999999999999999993332 22345556789999
Q ss_pred CEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCC
Q 009993 366 PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEG 443 (520)
Q Consensus 366 ~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg 443 (520)
.|++++|+| .+|++.|.|.+-|++-.-..+ ....++..| ..|||...+.++-..+..+++|.+..
T Consensus 363 ~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q-----------~~wHEiaRP--QiHGyDl~c~~~vn~~~~FVSgAdEK 429 (764)
T KOG1063|consen 363 GVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQ-----------QEWHEIARP--QIHGYDLTCLSFVNEDLQFVSGADEK 429 (764)
T ss_pred cceeeeecCCCCEEEEeccccceeeecccccc-----------cceeeeccc--ccccccceeeehccCCceeeecccce
Confidence 999999985 799999999999998665111 012222222 35677766666555555999999999
Q ss_pred eEEEEeCCch
Q 009993 444 IVRIWNFSQA 453 (520)
Q Consensus 444 ~v~iwd~~~~ 453 (520)
.+|+|+....
T Consensus 430 VlRvF~aPk~ 439 (764)
T KOG1063|consen 430 VLRVFEAPKS 439 (764)
T ss_pred eeeeecCcHH
Confidence 9999998754
No 140
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=1.1e-19 Score=166.46 Aligned_cols=316 Identities=15% Similarity=0.161 Sum_probs=225.5
Q ss_pred ccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEE---eCCC-CceEEEEe-cCCCEEEE
Q 009993 129 KSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIAS---SKPL-GCTIRAVA-ADKKLLVA 199 (520)
Q Consensus 129 ~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~---~~~~-~~~v~~~~-~~~~~l~s 199 (520)
..|+ ......+.-.+.|....|+|.+.-|+.....+.+.+|+.+.+...+. ++.+ ...|.|+. ..+.-+++
T Consensus 183 SVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviT 262 (626)
T KOG2106|consen 183 SVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVIT 262 (626)
T ss_pred chhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEe
Confidence 4565 34444556678899999999765555445578899999998865544 3332 25666766 33345789
Q ss_pred EeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEee---e
Q 009993 200 GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR---H 275 (520)
Q Consensus 200 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~ 275 (520)
|..+|.|.||+..+.. .......|.+.|.+++. ....|++|+.|..|..|| ..-+.++..+ .
T Consensus 263 gDS~G~i~Iw~~~~~~-------------~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd-~~y~k~r~~elPe~ 328 (626)
T KOG2106|consen 263 GDSGGNILIWSKGTNR-------------ISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWD-DNYRKLRETELPEQ 328 (626)
T ss_pred ecCCceEEEEeCCCce-------------EEeEeeecCCceEEEEEecCccEeecCccceEEecc-ccccccccccCchh
Confidence 9999999999975542 23333489999999999 556677799999999999 3333333333 6
Q ss_pred ccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccce
Q 009993 276 SDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANV 354 (520)
Q Consensus 276 ~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~ 354 (520)
.++|..+.+.+.-+++|. .+.|..=.++++-.+..+ +|......++.+|+.+.++|++.|+.+++|+ ..
T Consensus 329 ~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~--gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~------ 398 (626)
T KOG2106|consen 329 FGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQ--GHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DH------ 398 (626)
T ss_pred cCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEE--ecccceeeEEcCCChhheeeccCcceEEEcc--CC------
Confidence 678888885444466666 677777777777666655 6989999999999999999999999999999 22
Q ss_pred eeeeeecCCcCCEEEEEecC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC
Q 009993 355 LLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA 433 (520)
Q Consensus 355 ~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 433 (520)
++..+. --..++.|+.|+| ..++.|+..|...|.|.++..... .+ ..+...++..++++|
T Consensus 399 k~~wt~-~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~-----------------~~-~d~~~ls~v~ysp~G 459 (626)
T KOG2106|consen 399 KLEWTK-IIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVT-----------------IH-TDNEQLSVVRYSPDG 459 (626)
T ss_pred ceeEEE-EecCceeEeeccCcceEEEeeccceEEEEecccceeEE-----------------EE-ecCCceEEEEEcCCC
Confidence 222221 2246889999987 699999999999999998731110 00 113335677777888
Q ss_pred CEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCccccccccc
Q 009993 434 DRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAA 495 (520)
Q Consensus 434 ~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~~ 495 (520)
.+||.|+.|+.|+||.++.....-......++ ...+.+.||+|+..+.+-|.++
T Consensus 460 ~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g--------s~ithLDwS~Ds~~~~~~S~d~ 513 (626)
T KOG2106|consen 460 AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG--------SPITHLDWSSDSQFLVSNSGDY 513 (626)
T ss_pred CEEEEecCCCeEEEEEECCCCcEEEEeeeecC--------ceeEEeeecCCCceEEeccCce
Confidence 89999999999999999865432221111111 4468899999999999877654
No 141
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=9.2e-21 Score=167.61 Aligned_cols=250 Identities=18% Similarity=0.294 Sum_probs=180.3
Q ss_pred CCCEEEEEeCCCcEEEEEcccCcceeeecc---CCccccceEEeccCCCCeEEEEEcC---CEEEEEecCCeEEEEECCC
Q 009993 193 DKKLLVAGGTDGFIHCWRAVEVLPHLFDIS---GSEKQNTQFRLWEHEGPITSLALDL---TRIYSGSWDMTVRVWDRAL 266 (520)
Q Consensus 193 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~v~iwd~~~ 266 (520)
+..+.++=+..|.|+||++......+-... ......+++++.+|.+.=..|+|.+ ..|++|.--+.|++|...+
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~ 243 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST 243 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeecc
Confidence 455667778889999999865432221111 1134567889999999999999955 5688888888999999888
Q ss_pred CcEEEE----eeeccCEEEEee---CCCEEEEEc-CCeEEEEECCCC---eeeEEeecccccceEEEEecCCCCEEEEEe
Q 009993 267 LKCLKV----LRHSDWVYGLAP---HDTTVASTS-GSDVYIWDTNSG---CLLTVVNGAHVGNTKSLARSHTGDFLFTGG 335 (520)
Q Consensus 267 ~~~~~~----~~~~~~v~~~~~---~~~~l~~~~-d~~i~iwd~~~~---~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~ 335 (520)
+.-..- ..|...|-.+.. ....|++|+ ||+|+|||++.+ .++.+ .+|.+.|+.+.|+.+..+|++|+
T Consensus 244 g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~--kAh~sDVNVISWnr~~~lLasG~ 321 (440)
T KOG0302|consen 244 GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST--KAHNSDVNVISWNRREPLLASGG 321 (440)
T ss_pred CceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe--eccCCceeeEEccCCcceeeecC
Confidence 653322 228888888873 567888888 999999999998 33333 47999999999999888999999
Q ss_pred CCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeec
Q 009993 336 EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEV 412 (520)
Q Consensus 336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 412 (520)
.||+++|||++.-+.. .++..+.-|..+|++|.|+| ..|++++.|..|.+||+.-......... .....+..+
T Consensus 322 DdGt~~iwDLR~~~~~---~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~-~a~~~L~dl 397 (440)
T KOG0302|consen 322 DDGTLSIWDLRQFKSG---QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQ-EAAEGLQDL 397 (440)
T ss_pred CCceEEEEEhhhccCC---CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhcc-ccccchhcC
Confidence 9999999999987543 67889999999999999987 6899999999999999975322110000 000011222
Q ss_pred CCCcccccCcceeeEEEEecCC---EEEEecCCCeEEEEe
Q 009993 413 EPPQRMLHGFECNLLSVDIGAD---RIVCGGEEGIVRIWN 449 (520)
Q Consensus 413 ~~~~~~~~~~~~~v~~~~~~~~---~l~sg~~Dg~v~iwd 449 (520)
.+.....+.....+-.++|+.. ++++.+.|| +.||.
T Consensus 398 PpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 398 PPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred CceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 2223333333344556666654 999999999 45553
No 142
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.2e-20 Score=170.38 Aligned_cols=223 Identities=17% Similarity=0.183 Sum_probs=169.6
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEE---E------------------EeCCCCceEEEEec---CCCEEEEEeCCCcEEEE
Q 009993 154 AKLLFTSGYDSIVRMWHLEDGFSI---A------------------SSKPLGCTIRAVAA---DKKLLVAGGTDGFIHCW 209 (520)
Q Consensus 154 ~~~l~sgs~dg~v~vwd~~~~~~~---~------------------~~~~~~~~v~~~~~---~~~~l~sg~~dg~i~vw 209 (520)
|+++|.|+.|..|.|||+.--..+ . .-.+|+..|.+++. ..+.||+||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 689999999999999998522110 0 12357777777773 45689999999999999
Q ss_pred EcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCc-EEEEeeeccCEEEEe--
Q 009993 210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLK-CLKVLRHSDWVYGLA-- 283 (520)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~~~~v~~~~-- 283 (520)
|+.++. +...+..|.+.|.++.| .+..|++|+.|++|.+.|.+... .-..++..+.|-.+.
T Consensus 272 D~~~g~-------------p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~ 338 (463)
T KOG0270|consen 272 DVDTGK-------------PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWD 338 (463)
T ss_pred EcCCCC-------------cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEec
Confidence 999874 55567789999999999 56899999999999999998532 223344666677666
Q ss_pred -eCCCEEEEEc-CCeEEEEECCCC-eeeEEeecccccceEEEEecCC-CCEEEEEeCCCeEEEEEcccCccccceeeeee
Q 009993 284 -PHDTTVASTS-GSDVYIWDTNSG-CLLTVVNGAHVGNTKSLARSHT-GDFLFTGGEDGAIHMYEIINDCTEANVLLVAT 359 (520)
Q Consensus 284 -~~~~~l~~~~-d~~i~iwd~~~~-~~~~~~~~~~~~~i~~l~~s~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~ 359 (520)
.....++++. ||+|+-+|++.. +++.++. +|.++|.++++++. ..+++|++.|+.|++|++..... ..+..
T Consensus 339 ~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~----~~v~~ 413 (463)
T KOG0270|consen 339 PHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP----KSVKE 413 (463)
T ss_pred CCCceeEEEecCCceEEeeecCCCCCceeEEE-eccCCcceEEecCCCCcceeeccccceEEEEeecCCCC----ccccc
Confidence 3345566666 899999999986 8888887 79999999999874 45788999999999999977632 11221
Q ss_pred ecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcc
Q 009993 360 WIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 360 ~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~ 394 (520)
..-.-+...|.+++| ..++.|+..+.++|||+.+.
T Consensus 414 ~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 414 HSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred ccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 111123356666665 58899999999999999875
No 143
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2.2e-22 Score=191.63 Aligned_cols=227 Identities=27% Similarity=0.362 Sum_probs=198.2
Q ss_pred hhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEccc
Q 009993 136 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVE 213 (520)
Q Consensus 136 ~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~ 213 (520)
+.+..|...|.|+..-..++.+++|+.|..+-+|.+..-..+..+.+|..+|-++. ++..+|++|+.+|+|++||+++
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 44567899999999877889999999999999999988888888999999998887 6778999999999999999987
Q ss_pred CcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCE
Q 009993 214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTT 288 (520)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~ 288 (520)
+. .+.++.+|...+.++.|++ .+.++|+.|+.+++||.+...|.+.+. |...|..+. |+|++
T Consensus 102 Ak-------------~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~ 168 (825)
T KOG0267|consen 102 AK-------------IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRW 168 (825)
T ss_pred hh-------------hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCce
Confidence 53 5668899999999999954 778899999999999999889999887 666666654 99999
Q ss_pred EEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCE
Q 009993 289 VASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPV 367 (520)
Q Consensus 289 l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v 367 (520)
++.++ |..++|||...|+....|. .|.+.+.++.|+|..-++++|+.|+++++||+++. ..+.........|
T Consensus 169 v~~g~ed~tvki~d~~agk~~~ef~-~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf------e~I~s~~~~~~~v 241 (825)
T KOG0267|consen 169 VASGGEDNTVKIWDLTAGKLSKEFK-SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF------EVISSGKPETDGV 241 (825)
T ss_pred eeccCCcceeeeecccccccccccc-cccccccccccCchhhhhccCCCCceeeeecccee------EEeeccCCccCCc
Confidence 99999 7999999999999999998 59999999999999999999999999999999988 5666666778899
Q ss_pred EEEEecCC--EEEEEeC
Q 009993 368 NSLAFEFP--WLVSAAG 382 (520)
Q Consensus 368 ~~l~~~~~--~l~s~s~ 382 (520)
.++.|++. .+++|..
T Consensus 242 ~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 242 RSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred eeeeecCCceeeecCch
Confidence 99999873 4444433
No 144
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=8.2e-20 Score=178.97 Aligned_cols=263 Identities=14% Similarity=0.135 Sum_probs=197.8
Q ss_pred eEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECC
Q 009993 186 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRA 265 (520)
Q Consensus 186 ~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~ 265 (520)
.-.++.++|..|++++.||.|++|+..... .....+..+...|.+++...++|++|+.+++|.+|.+.
T Consensus 17 t~i~~d~~gefi~tcgsdg~ir~~~~~sd~------------e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 17 TLICYDPDGEFICTCGSDGDIRKWKTNSDE------------EEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred EEEEEcCCCCEEEEecCCCceEEeecCCcc------------cCCchhhccCceeEEEeecccceEEeeccceEEEeeCC
Confidence 345667999999999999999999865431 11122223788999999999999999999999999998
Q ss_pred CCcEEEE---eeeccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEE
Q 009993 266 LLKCLKV---LRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIH 341 (520)
Q Consensus 266 ~~~~~~~---~~~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~ 341 (520)
+++.-.. +..+-.+.++..+|++++.|+ |-.|++.+.........+. +|.++|.++.|+|++++||+.+-||.|+
T Consensus 85 s~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~~p~~~fLAvss~dG~v~ 163 (933)
T KOG1274|consen 85 SGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSYDPKGNFLAVSSCDGKVQ 163 (933)
T ss_pred CCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-ccCCceeeeeEcCCCCEEEEEecCceEE
Confidence 8765433 335555566668889999999 7889999999998888887 7999999999999999999999999999
Q ss_pred EEEcccCccccceeeeeeecC--CcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcc
Q 009993 342 MYEIINDCTEANVLLVATWIP--HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQR 417 (520)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (520)
+||+.++........+..-.. ....+..++|+| ..++..+.|+.|++|+..+....+.....
T Consensus 164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~-------------- 229 (933)
T KOG1274|consen 164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK-------------- 229 (933)
T ss_pred EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc--------------
Confidence 999998833211111111111 144677889988 48888899999999999987544432221
Q ss_pred cccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccc
Q 009993 418 MLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQ 490 (520)
Q Consensus 418 ~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~ 490 (520)
.......+..++|.|.|||+++.||.|-|||+++-. + ...++.+...+|.|++..+-.
T Consensus 230 -~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~---~-----------~~~~~~Vc~~aw~p~~n~it~ 287 (933)
T KOG1274|consen 230 -LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE---R-----------HEFKRAVCCEAWKPNANAITL 287 (933)
T ss_pred -ccccceEEEEEcCCCcEEeeeccCCcEEEEecccch---h-----------ccccceeEEEecCCCCCeeEE
Confidence 111225677888888899999999999999999711 1 122345677888888776543
No 145
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=6.6e-20 Score=159.48 Aligned_cols=294 Identities=18% Similarity=0.220 Sum_probs=207.5
Q ss_pred ccHHHhhhhhccccccEEEEEEcc----C-CCEEEEEeCCCeEEEEECCCCcEEE---EeC--CCCceEEEE--e---c-
Q 009993 129 KSWKELIDVLYGHTEAVLTVFVLA----S-AKLLFTSGYDSIVRMWHLEDGFSIA---SSK--PLGCTIRAV--A---A- 192 (520)
Q Consensus 129 ~~W~~~~~~l~~h~~~V~~l~~~~----~-~~~l~sgs~dg~v~vwd~~~~~~~~---~~~--~~~~~v~~~--~---~- 192 (520)
+..+-..+..++|+.+|..++|++ + -..++|++ ...+.+|.......+. .+. .|......+ + .
T Consensus 25 ~~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~ 103 (385)
T KOG1034|consen 25 RSYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNT 103 (385)
T ss_pred cceEeeeehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCC
Confidence 344445667789999999999984 2 24555555 4568888876443222 222 233333322 2 2
Q ss_pred CCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCcE
Q 009993 193 DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKC 269 (520)
Q Consensus 193 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~~ 269 (520)
.+.++|+|+.-|.|+|.|+.++. ....+.+|...|+.+.+ ++++++++|.|.+|++||+++..|
T Consensus 104 ~~p~la~~G~~GvIrVid~~~~~-------------~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C 170 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVSGQ-------------CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC 170 (385)
T ss_pred CCeeEEeecceeEEEEEecchhh-------------hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE
Confidence 25588899999999999987753 56678899999999999 557999999999999999999999
Q ss_pred EEEee----eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEee---------------------------ccc
Q 009993 270 LKVLR----HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVN---------------------------GAH 315 (520)
Q Consensus 270 ~~~~~----~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~---------------------------~~~ 315 (520)
+..+. |.+.|.++. .++.++++++ |.++.+|++...+....++ .-|
T Consensus 171 v~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diH 250 (385)
T KOG1034|consen 171 VAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIH 250 (385)
T ss_pred EEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccc
Confidence 99996 999999988 7889999999 9999999998432211110 124
Q ss_pred ccceEEEEecCCCCEEEEEeCCCeEEEEEcc-cCcc-------ccceeeeeeecCCcCCEEEEEe--cC--CEEEEEeCC
Q 009993 316 VGNTKSLARSHTGDFLFTGGEDGAIHMYEII-NDCT-------EANVLLVATWIPHTGPVNSLAF--EF--PWLVSAAGD 383 (520)
Q Consensus 316 ~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~-~~~~-------~~~~~~~~~~~~h~~~v~~l~~--~~--~~l~s~s~d 383 (520)
...|-|+.|- |+++++-+-++.|..|... -.+. ......+..+.-....|.-+.| ++ ++||.|...
T Consensus 251 rnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~ 328 (385)
T KOG1034|consen 251 RNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQS 328 (385)
T ss_pred cchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCC
Confidence 4444444442 6889998889999999872 2211 1112334445555566777776 55 799999999
Q ss_pred CcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCC
Q 009993 384 GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFS 451 (520)
Q Consensus 384 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~ 451 (520)
|.|.+||++....... ........+....-++++-++..|+...+|++|.-||.-
T Consensus 329 g~v~vwdL~~~ep~~~-------------ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 329 GKVYVWDLDNNEPPKC-------------TTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CcEEEEECCCCCCccC-------------ceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999999997532210 111222344455667777788899999999999999854
No 146
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=1.7e-20 Score=171.38 Aligned_cols=281 Identities=16% Similarity=0.171 Sum_probs=207.1
Q ss_pred CCCCCCCCcccHH----Hhhhhhcccc--ccEEEEEEccCCCE-EEEEeCCCeEEEEECCCC--c--EEEEeCCCCceEE
Q 009993 120 PLGAGFSDDKSWK----ELIDVLYGHT--EAVLTVFVLASAKL-LFTSGYDSIVRMWHLEDG--F--SIASSKPLGCTIR 188 (520)
Q Consensus 120 ~~~~~~~~~~~W~----~~~~~l~~h~--~~V~~l~~~~~~~~-l~sgs~dg~v~vwd~~~~--~--~~~~~~~~~~~v~ 188 (520)
..+++..+.++|+ +....+-.|+ -.|.++.|+....+ +++.+.|..+++|.-... + .+....+....+.
T Consensus 6 ~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv 85 (673)
T KOG4378|consen 6 HVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCV 85 (673)
T ss_pred eeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHH
Confidence 3456666778887 2222233332 24889999865532 234456888999975322 1 1222333444444
Q ss_pred EEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCC
Q 009993 189 AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRAL 266 (520)
Q Consensus 189 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~ 266 (520)
++.....++++|+..+.|+|||++.. .....+.+|...|+++.+ ...+|++++..|-|.+..+.+
T Consensus 86 ~~~s~S~y~~sgG~~~~Vkiwdl~~k-------------l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t 152 (673)
T KOG4378|consen 86 ACASQSLYEISGGQSGCVKIWDLRAK-------------LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT 152 (673)
T ss_pred hhhhcceeeeccCcCceeeehhhHHH-------------HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc
Confidence 44456689999999999999998643 355678899999999999 568999999999999999999
Q ss_pred CcEEEEeeec-c-CEEEEe--eCCC-EEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCC-CCEEEEEeCCCe
Q 009993 267 LKCLKVLRHS-D-WVYGLA--PHDT-TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT-GDFLFTGGEDGA 339 (520)
Q Consensus 267 ~~~~~~~~~~-~-~v~~~~--~~~~-~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~-~~~l~tg~~dg~ 339 (520)
+.....+.+. + .|.-+. +..+ +|.+++ +|.|.+||+....++..+...|..+...++|+|. ..+|++.+.|..
T Consensus 153 ~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk 232 (673)
T KOG4378|consen 153 KQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK 232 (673)
T ss_pred CccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccce
Confidence 9888888744 3 343444 4444 455566 7999999999998888888889999999999995 567889999999
Q ss_pred EEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcc
Q 009993 340 IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQR 417 (520)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (520)
|.+||.+.. .....+ .-..+...++|.+ .+|+.|+..|.|..||++.. ..+..
T Consensus 233 i~~yD~~s~------~s~~~l-~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~------------------k~Pv~ 287 (673)
T KOG4378|consen 233 INIYDIRSQ------ASTDRL-TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST------------------KAPVA 287 (673)
T ss_pred EEEeecccc------ccccee-eecCCcceeeecCCceEEEeecCCceEEEEecccC------------------CCCce
Confidence 999999876 233332 2345889999965 69999999999999999975 56677
Q ss_pred cccCcceeeEEEEecCC-EEEE
Q 009993 418 MLHGFECNLLSVDIGAD-RIVC 438 (520)
Q Consensus 418 ~~~~~~~~v~~~~~~~~-~l~s 438 (520)
+++.|...|.+++|... .+++
T Consensus 288 v~sah~~sVt~vafq~s~tvlt 309 (673)
T KOG4378|consen 288 VRSAHDASVTRVAFQPSPTVLT 309 (673)
T ss_pred EeeecccceeEEEeeecceeee
Confidence 78889988999888765 4443
No 147
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.86 E-value=8.5e-20 Score=156.00 Aligned_cols=280 Identities=18% Similarity=0.157 Sum_probs=199.3
Q ss_pred CCeEEEEECCCCcE---EEEeCCCCceEEEEe---cCCCEEEEEeCC-------CcEEEEEcccCcceeeeccCCccccc
Q 009993 163 DSIVRMWHLEDGFS---IASSKPLGCTIRAVA---ADKKLLVAGGTD-------GFIHCWRAVEVLPHLFDISGSEKQNT 229 (520)
Q Consensus 163 dg~v~vwd~~~~~~---~~~~~~~~~~v~~~~---~~~~~l~sg~~d-------g~i~vwd~~~~~~~~~~~~~~~~~~~ 229 (520)
|+.|.+-+++.+.. .+.+..|.+.|..++ .+...|+++..+ ..+.||.+...... ........
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~----S~~~tlE~ 114 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ----SNSSTLEC 114 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc----cccchhhH
Confidence 67787777765432 234566778888886 455666666543 23678988654321 11122333
Q ss_pred eEEec-cCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcE-EEEee------eccCEEEEe----eCCCEEEEEcCC
Q 009993 230 QFRLW-EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKC-LKVLR------HSDWVYGLA----PHDTTVASTSGS 295 (520)
Q Consensus 230 ~~~~~-~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~------~~~~v~~~~----~~~~~l~~~~d~ 295 (520)
+..+. .+-+.|.|+.| ++..+++-. |..|.+|++..+.. ...+. +....++-. .+++.+++.+|+
T Consensus 115 v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~ 193 (370)
T KOG1007|consen 115 VASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDS 193 (370)
T ss_pred hhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCC
Confidence 44443 45679999999 556777766 78999999987765 33332 222222222 468899999999
Q ss_pred eEEEEECCCCeeeEEeecccccceEEEEecCCCC-EEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC
Q 009993 296 DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD-FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF 374 (520)
Q Consensus 296 ~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 374 (520)
++..||+++......+..+|...|..+.|+|+.+ +|++|++||.|+|||.+... .++..+.+|...|.++.|+|
T Consensus 194 tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk-----~pv~el~~HsHWvW~VRfn~ 268 (370)
T KOG1007|consen 194 TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK-----FPVQELPGHSHWVWAVRFNP 268 (370)
T ss_pred cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC-----ccccccCCCceEEEEEEecC
Confidence 9999999999999999989999999999999866 68899999999999999875 68899999999999999987
Q ss_pred ---CEEEEEeCCCcEEEEeCCcccccCCCCCCCce---------eeee-ecCCCcccccCcceeeEEEEecCC---EEEE
Q 009993 375 ---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRV---------SRVI-EVEPPQRMLHGFECNLLSVDIGAD---RIVC 438 (520)
Q Consensus 375 ---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~~~~v~~~~~~~~---~l~s 438 (520)
++|++|+.|..|.+|....-........+... .+.. -.......+..|..+|++++|+.. .+|+
T Consensus 269 ~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFAS 348 (370)
T KOG1007|consen 269 EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFAS 348 (370)
T ss_pred ccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEE
Confidence 69999999999999987653211111000000 0000 112223467789999999999754 9999
Q ss_pred ecCCCeEEEEeCCc
Q 009993 439 GGEEGIVRIWNFSQ 452 (520)
Q Consensus 439 g~~Dg~v~iwd~~~ 452 (520)
-+.||+|.|=.+..
T Consensus 349 LSYDGRviIs~V~r 362 (370)
T KOG1007|consen 349 LSYDGRVIISSVPR 362 (370)
T ss_pred eccCceEEeecCCh
Confidence 99999999877764
No 148
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=7.6e-20 Score=158.18 Aligned_cols=290 Identities=16% Similarity=0.134 Sum_probs=202.0
Q ss_pred HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009993 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR 210 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd 210 (520)
++.++|.-.. -.|+.|++.|.+||+|..||.|.|||+.|...-+.+.+|-.+|.+++ ++|++|+|++.|..|.+||
T Consensus 16 el~~tld~~~--a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwD 93 (405)
T KOG1273|consen 16 ELTHTLDNPL--AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWD 93 (405)
T ss_pred hhceeccCCc--cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEe
Confidence 3444453322 68999999999999999999999999999888788888888887665 9999999999999999999
Q ss_pred cccCcceeeeccCCccccceEEeccCCCCeEEEEEc---CCEEEEEecCCeEEEEECCCCcEEEEee--ec---cCEE--
Q 009993 211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD---LTRIYSGSWDMTVRVWDRALLKCLKVLR--HS---DWVY-- 280 (520)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~---~~v~-- 280 (520)
+..|. +...+ ...++|....|. .+..++.-.+..-.+-++..+.. ..+. .. +.+-
T Consensus 94 l~~gs-------------~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~ 158 (405)
T KOG1273|consen 94 LLKGS-------------PLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASH 158 (405)
T ss_pred ccCCC-------------ceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCcccccccccc
Confidence 98774 22222 346788888883 34555554455555555544221 1121 11 1111
Q ss_pred -EEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCc---ccccee
Q 009993 281 -GLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC---TEANVL 355 (520)
Q Consensus 281 -~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~---~~~~~~ 355 (520)
.+...|+++++|. .|.+.++|..+.+++..+.......|..+.++..|++|+.-+.|..|+.|+++.-. ....+.
T Consensus 159 ~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e 238 (405)
T KOG1273|consen 159 GVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVE 238 (405)
T ss_pred ccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcC
Confidence 2447899999999 89999999999999888874344788999999999999999999999999987321 111222
Q ss_pred eeeeecC--CcCCEEEEEecC--CEEEEEeC-CCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcc-eeeEEE
Q 009993 356 LVATWIP--HTGPVNSLAFEF--PWLVSAAG-DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE-CNLLSV 429 (520)
Q Consensus 356 ~~~~~~~--h~~~v~~l~~~~--~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~ 429 (520)
+.+.+.. ....=.++.|++ .|+++|+. -..++||.-.. +...++++|.. .....+
T Consensus 239 ~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~-------------------GsLVKILhG~kgE~l~DV 299 (405)
T KOG1273|consen 239 PEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI-------------------GSLVKILHGTKGEELLDV 299 (405)
T ss_pred hhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCC-------------------cceeeeecCCchhheeec
Confidence 2222211 111224556654 57777664 56799999877 45666777766 455666
Q ss_pred EecCC--EEEEecCCCeEEEEeCCchHhHHHH
Q 009993 430 DIGAD--RIVCGGEEGIVRIWNFSQAFEIERR 459 (520)
Q Consensus 430 ~~~~~--~l~sg~~Dg~v~iwd~~~~~~~~~~ 459 (520)
.|++- .+++- ..|.|++|...........
T Consensus 300 ~whp~rp~i~si-~sg~v~iw~~~~~enwsaf 330 (405)
T KOG1273|consen 300 NWHPVRPIIASI-ASGVVYIWAVVQVENWSAF 330 (405)
T ss_pred ccccceeeeeec-cCCceEEEEeecccchhhc
Confidence 67665 55555 6789999998765444333
No 149
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.86 E-value=7e-20 Score=166.00 Aligned_cols=288 Identities=15% Similarity=0.115 Sum_probs=198.7
Q ss_pred hhhhccccccEEEEEEccCC--CEEEEEeCCCeEEEEECCCC----cEEEEeCCCCceEEEEe---cCCCEEEEEeCCCc
Q 009993 135 IDVLYGHTEAVLTVFVLASA--KLLFTSGYDSIVRMWHLEDG----FSIASSKPLGCTIRAVA---ADKKLLVAGGTDGF 205 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~--~~l~sgs~dg~v~vwd~~~~----~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~ 205 (520)
....+-|.++|++++|+|.. +++++|..-|.|-+||+.+. ..+..+.+|..+|.++. .+...+++.+.||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 34556789999999999964 58899999999999999533 34556788988888776 45668999999999
Q ss_pred EEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcE-EEEee-eccCEEE
Q 009993 206 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKC-LKVLR-HSDWVYG 281 (520)
Q Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~-~~~~v~~ 281 (520)
|++-|++.+.. ..+..+......+.++.+ +...++.+..=|...+||.+++.. ...+. |...|.+
T Consensus 259 iR~~D~~~~i~-----------e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~s 327 (498)
T KOG4328|consen 259 IRLQDFEGNIS-----------EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITS 327 (498)
T ss_pred eeeeeecchhh-----------HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccce
Confidence 99999977632 223333334445566666 445567777667999999998765 33333 7779999
Q ss_pred Ee---eCCCEEEEEc-CCeEEEEECCCCeeeE---EeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccce
Q 009993 282 LA---PHDTTVASTS-GSDVYIWDTNSGCLLT---VVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANV 354 (520)
Q Consensus 282 ~~---~~~~~l~~~~-d~~i~iwd~~~~~~~~---~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~ 354 (520)
++ ....++++++ |++++|||++...... .....|...|.+..|||.+..|+|.+.|..|+|||..--... .
T Consensus 328 v~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~--~ 405 (498)
T KOG4328|consen 328 VALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK--D 405 (498)
T ss_pred eecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc--C
Confidence 88 4567888888 9999999998643222 111259999999999999988999999999999998411000 0
Q ss_pred eeeeeecCCcC------CEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceee
Q 009993 355 LLVATWIPHTG------PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNL 426 (520)
Q Consensus 355 ~~~~~~~~h~~------~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 426 (520)
.+..++ .|.. ......|+| .++++|-.-..|-|+|-..++...... .+.. ..-..+
T Consensus 406 ~p~~~I-~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~-----------~P~~----~tI~~v 469 (498)
T KOG4328|consen 406 EPLGTI-PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELH-----------DPES----STIPSV 469 (498)
T ss_pred Ccccee-eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeecc-----------Cccc----cccccc
Confidence 122221 2221 223445777 688899888899999987653221100 1111 111346
Q ss_pred EEEEecCC-EEEEecCCCeEEEEeCC
Q 009993 427 LSVDIGAD-RIVCGGEEGIVRIWNFS 451 (520)
Q Consensus 427 ~~~~~~~~-~l~sg~~Dg~v~iwd~~ 451 (520)
..++|-++ .++-++..|.|+||--+
T Consensus 470 n~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 470 NEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred eeecccccceeccCCccceEEEEecC
Confidence 67777777 45555567888888543
No 150
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.86 E-value=1.3e-19 Score=157.31 Aligned_cols=268 Identities=20% Similarity=0.304 Sum_probs=192.7
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEECCCCcE------------EEEeC-CCCceEEEE---------ecCCCEEEEEeCC
Q 009993 146 LTVFVLASAKLLFTSGYDSIVRMWHLEDGFS------------IASSK-PLGCTIRAV---------AADKKLLVAGGTD 203 (520)
Q Consensus 146 ~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~------------~~~~~-~~~~~v~~~---------~~~~~~l~sg~~d 203 (520)
..+.|+|||..|++-+.|..+.+|++..... ..+++ .....|... .|+..++++.+.+
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 4578999999999999999999999853210 01111 122333322 2788899999999
Q ss_pred CcEEEEEcccCcceeeeccCCccccceEEeccCCCCe---EEEEE--cCCEEEEEecCCeEEEEEC-CCCcEEEE---ee
Q 009993 204 GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPI---TSLAL--DLTRIYSGSWDMTVRVWDR-ALLKCLKV---LR 274 (520)
Q Consensus 204 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---~~l~~--~~~~l~s~s~dg~v~iwd~-~~~~~~~~---~~ 274 (520)
.-|++||.-+|.. ........|...+ .+++| ||.+|++|.. ..|+++|+ +.|..-.. +.
T Consensus 133 ~PIh~wdaftG~l-----------raSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 133 QPIHLWDAFTGKL-----------RASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred Cceeeeecccccc-----------ccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhh
Confidence 9999999988752 2333334454443 46788 7788887764 79999999 55543222 21
Q ss_pred -----eccCEEEEe--e-CCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC-CCeEEEEE
Q 009993 275 -----HSDWVYGLA--P-HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DGAIHMYE 344 (520)
Q Consensus 275 -----~~~~v~~~~--~-~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~-dg~i~iwd 344 (520)
..+-+.+++ | +...+++++ ...+-|+.-..+.++..+. +|.+.|+.++|.++|+.|++|+. |-.|.+||
T Consensus 201 ~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-gh~gGvThL~~~edGn~lfsGaRk~dkIl~WD 279 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-GHGGGVTHLQWCEDGNKLFSGARKDDKILCWD 279 (406)
T ss_pred cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec-ccCCCeeeEEeccCcCeecccccCCCeEEEEe
Confidence 245556665 4 455888888 7888888888888888876 79999999999999999999876 67899999
Q ss_pred cccCccccceeeeeeecCCcC-CEEEEEec----CCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccc
Q 009993 345 IINDCTEANVLLVATWIPHTG-PVNSLAFE----FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML 419 (520)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (520)
++... .++..+..|.+ .-..|.|+ +++|++|+.||.|++||+.+. ......+
T Consensus 280 iR~~~-----~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~------------------gn~~sv~ 336 (406)
T KOG2919|consen 280 IRYSR-----DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL------------------GNEVSVT 336 (406)
T ss_pred ehhcc-----chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC------------------CCccccc
Confidence 99875 56777888877 55567773 379999999999999999874 2234445
Q ss_pred cCcceeeEEEEecCC--EEEEecCCCeEEEEeCCc
Q 009993 420 HGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQ 452 (520)
Q Consensus 420 ~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~ 452 (520)
..+...+..++.++- .++|++.. |+|...+
T Consensus 337 ~~~sd~vNgvslnP~mpilatssGq---r~f~~~~ 368 (406)
T KOG2919|consen 337 GNYSDTVNGVSLNPIMPILATSSGQ---RIFKYPK 368 (406)
T ss_pred ccccccccceecCcccceeeeccCc---eeecCCC
Confidence 566777777887776 66666542 4444443
No 151
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=7.1e-21 Score=176.88 Aligned_cols=255 Identities=21% Similarity=0.302 Sum_probs=193.1
Q ss_pred ccHHHhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCC--------CcEEEEeCCCCceEEEEe--cCCCEEE
Q 009993 129 KSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED--------GFSIASSKPLGCTIRAVA--ADKKLLV 198 (520)
Q Consensus 129 ~~W~~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~--------~~~~~~~~~~~~~v~~~~--~~~~~l~ 198 (520)
+.|..-. ++..|.+.|+.++|.|....|++++.||++++|+++. -+++.+|.+|..+|.|+. .++..++
T Consensus 282 k~w~ik~-tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~y 360 (577)
T KOG0642|consen 282 KKWNIKF-TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCY 360 (577)
T ss_pred eecceee-eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEE
Confidence 3355333 8899999999999999999999999999999999932 257889999999999887 8899999
Q ss_pred EEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee--
Q 009993 199 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-- 274 (520)
Q Consensus 199 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-- 274 (520)
+|+.||+|+.|++. .....++ ..........+.||++.|+.+++ ....|++++.||+|+.|+...... .++.
T Consensus 361 sgg~Dg~I~~w~~p-~n~dp~d--s~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~ 436 (577)
T KOG0642|consen 361 SGGIDGTIRCWNLP-PNQDPDD--SYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEP 436 (577)
T ss_pred eeccCceeeeeccC-CCCCccc--ccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCc
Confidence 99999999999875 2222111 12223455678899999999999 457799999999999999876655 3333
Q ss_pred -eccCEEEEee---CCCEEEEEc-CCeEEEEECCCCeeeEEeecc------cccceEEEEecCCCCEEEEEeCCCeEEEE
Q 009993 275 -HSDWVYGLAP---HDTTVASTS-GSDVYIWDTNSGCLLTVVNGA------HVGNTKSLARSHTGDFLFTGGEDGAIHMY 343 (520)
Q Consensus 275 -~~~~v~~~~~---~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~------~~~~i~~l~~s~~~~~l~tg~~dg~i~iw 343 (520)
....-.+++. .....++.. -+.-.+++......+..+... ....+..+..+|.+.+.+++.+|+.|+++
T Consensus 437 ~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~ 516 (577)
T KOG0642|consen 437 KEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFF 516 (577)
T ss_pred cccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecc
Confidence 2223334442 212222222 344445555555555544321 12356788899999999999999999999
Q ss_pred EcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993 344 EIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~ 394 (520)
|..++ .++.....|...+++++++| .+|++++.|+.+++|.+...
T Consensus 517 dn~~~------~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 517 DNKTG------KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ccccc------ccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence 99999 78889999999999999976 69999999999999998764
No 152
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.84 E-value=2e-19 Score=159.24 Aligned_cols=241 Identities=19% Similarity=0.197 Sum_probs=177.2
Q ss_pred hhccccccEEEEEEccCC--CEEEEEeCCCeEEEEECCC----------------CcEEEEeCCCCceEEEE--ec-CCC
Q 009993 137 VLYGHTEAVLTVFVLASA--KLLFTSGYDSIVRMWHLED----------------GFSIASSKPLGCTIRAV--AA-DKK 195 (520)
Q Consensus 137 ~l~~h~~~V~~l~~~~~~--~~l~sgs~dg~v~vwd~~~----------------~~~~~~~~~~~~~v~~~--~~-~~~ 195 (520)
..-+|.+.|..+.-++-+ .+.++=+..|.|.||++.. .+++.++.+|...-+++ +| ...
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 345788888887777654 4566667789999999853 24566777776554444 44 233
Q ss_pred EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCC---cE
Q 009993 196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALL---KC 269 (520)
Q Consensus 196 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~---~~ 269 (520)
.|++|..-+.|++|...++.-. .-...+.+|+..|..|+| ..+.|++||.||+|+|||++.+ .+
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~----------vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWK----------VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred ccccCccccceEeeeeccCcee----------ecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccce
Confidence 5888888899999998876421 223456679999999999 5578999999999999999988 55
Q ss_pred EEEeeeccCEEEEeeC--CCEEEEEc-CCeEEEEECCC---CeeeEEeecccccceEEEEecCCC-CEEEEEeCCCeEEE
Q 009993 270 LKVLRHSDWVYGLAPH--DTTVASTS-GSDVYIWDTNS---GCLLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHM 342 (520)
Q Consensus 270 ~~~~~~~~~v~~~~~~--~~~l~~~~-d~~i~iwd~~~---~~~~~~~~~~~~~~i~~l~~s~~~-~~l~tg~~dg~i~i 342 (520)
+.+-.|..-|+.++.+ ..+|++|+ ||+++|||++. ++++..+. .|..+|+++.|+|.. ..|++++.|..|.+
T Consensus 296 ~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk-~Hk~pItsieW~p~e~s~iaasg~D~Qiti 374 (440)
T KOG0302|consen 296 VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK-YHKAPITSIEWHPHEDSVIAASGEDNQITI 374 (440)
T ss_pred eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE-eccCCeeEEEeccccCceEEeccCCCcEEE
Confidence 5555599999999843 34788888 89999999986 56778887 599999999999954 57888999999999
Q ss_pred EEcccCccccc-----e-----eeeeeecCC--cCCEEEEEec---CCEEEEEeCCCcEEEE
Q 009993 343 YEIINDCTEAN-----V-----LLVATWIPH--TGPVNSLAFE---FPWLVSAAGDGKLSLI 389 (520)
Q Consensus 343 wd~~~~~~~~~-----~-----~~~~~~~~h--~~~v~~l~~~---~~~l~s~s~dg~i~vw 389 (520)
||+........ . .+-+-+.-| ...+-.+.|+ |.+|++.+.|| +.||
T Consensus 375 WDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 375 WDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred EEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 99965432100 0 111222334 3357788886 47999999998 4444
No 153
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=1.1e-19 Score=166.07 Aligned_cols=282 Identities=16% Similarity=0.152 Sum_probs=196.1
Q ss_pred eCCCeEEEEECCCCcEEEEeCCCC--ceEEEEecC-CCEEEEE--eCCCcEEEEEcccCcceeeeccCCccccceEEecc
Q 009993 161 GYDSIVRMWHLEDGFSIASSKPLG--CTIRAVAAD-KKLLVAG--GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE 235 (520)
Q Consensus 161 s~dg~v~vwd~~~~~~~~~~~~~~--~~v~~~~~~-~~~l~sg--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (520)
+...++++||+...+....+..|+ ..+.++..+ .+.|+++ +.|..+++|.-...... ........+
T Consensus 9 S~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~---------Vp~~~k~~g 79 (673)
T KOG4378|consen 9 STGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPE---------VPRVRKLTG 79 (673)
T ss_pred ccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCc---------cceeecccc
Confidence 334469999997665444443222 224455422 2225444 45777888864322100 011111222
Q ss_pred CCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeE
Q 009993 236 HEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLT 309 (520)
Q Consensus 236 h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~ 309 (520)
. .-.|++. ...++++|+..+.|+|||++...+.+.+. |.+.|+++. ..+.+|++++ +|.|.|..+.++..-.
T Consensus 80 d--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt 157 (673)
T KOG4378|consen 80 D--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTT 157 (673)
T ss_pred c--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccc
Confidence 2 2233433 34789999999999999999777777776 999999998 6688999999 7999999999998888
Q ss_pred EeecccccceEEEEecCCCCE-EEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCc
Q 009993 310 VVNGAHVGNTKSLARSHTGDF-LFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGK 385 (520)
Q Consensus 310 ~~~~~~~~~i~~l~~s~~~~~-l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~ 385 (520)
.+..+....|.-+.|+|..++ |.+++++|.|.+||+.... +...-...|..+...|+|+| ..|++.+.|..
T Consensus 158 ~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s-----p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk 232 (673)
T KOG4378|consen 158 TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS-----PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK 232 (673)
T ss_pred ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC-----cccchhhhccCCcCcceecCCccceEEEecccce
Confidence 886444556778999997764 5678999999999998874 33445568999999999976 59999999999
Q ss_pred EEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcc
Q 009993 386 LSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRG 465 (520)
Q Consensus 386 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~ 465 (520)
|.+||++... ...+....|.....++..+|.+|+.|...|.|..||++....+-....+
T Consensus 233 i~~yD~~s~~------------------s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa--- 291 (673)
T KOG4378|consen 233 INIYDIRSQA------------------STDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA--- 291 (673)
T ss_pred EEEeeccccc------------------ccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeee---
Confidence 9999998632 1222334566667778888889999999999999999865543332222
Q ss_pred cccchhhhhccceeeeccCC
Q 009993 466 IRLENRMRRRKLQTEMSSKG 485 (520)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~g 485 (520)
+...++.++|.|.-
T Consensus 292 ------h~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 292 ------HDASVTRVAFQPSP 305 (673)
T ss_pred ------cccceeEEEeeecc
Confidence 22235666776654
No 154
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.84 E-value=2.2e-19 Score=168.80 Aligned_cols=149 Identities=15% Similarity=0.182 Sum_probs=110.3
Q ss_pred eEEEEecC-CCCEEEEEeCCCeEEEEEcccCcccc-ceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCc
Q 009993 319 TKSLARSH-TGDFLFTGGEDGAIHMYEIINDCTEA-NVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 319 i~~l~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~ 393 (520)
|+.+.|.| |...|+++++||.|++|.+..+.... ...+...+..|...|+++.|+| +.|++++.|.+|++||+.+
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 66777877 66789999999999999998764332 2345667789999999999998 7999999999999999998
Q ss_pred ccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC--CEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchh
Q 009993 394 LLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENR 471 (520)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 471 (520)
. .....+.+|+..|+.++|++ +.++|.+.||+|++|+-..+.+.-... .+.
T Consensus 710 ~-------------------~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg---~gp----- 762 (1012)
T KOG1445|consen 710 A-------------------KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEG---KGP----- 762 (1012)
T ss_pred h-------------------hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccC---CCC-----
Confidence 4 34445788999988877765 599999999999999988765432211 111
Q ss_pred hhhccceeeeccCCCcccccccc
Q 009993 472 MRRRKLQTEMSSKGGRTDQCSVA 494 (520)
Q Consensus 472 ~~~~~~~~~~s~~g~~~~~~s~~ 494 (520)
...+-..+-|-=||+.++...++
T Consensus 763 vgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 763 VGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred ccCcceeEEEEecCcEEEEeccc
Confidence 11223445566667666665543
No 155
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=9.4e-20 Score=159.42 Aligned_cols=245 Identities=16% Similarity=0.232 Sum_probs=178.7
Q ss_pred CEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE----cCCEEEEEecCCeEEEEECCCCcEE
Q 009993 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGSWDMTVRVWDRALLKCL 270 (520)
Q Consensus 195 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~dg~v~iwd~~~~~~~ 270 (520)
..++++...|.|++||..++. ....+.++...++.+.| .+..+.+|+.||+|++||+++....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~-------------~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~ 107 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ-------------LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES 107 (376)
T ss_pred eeEEEEecCCeEEEEeccchh-------------hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh
Confidence 568899999999999988763 45567788888888888 3478999999999999999988766
Q ss_pred EEee---ec-cCEEEEe--eCCCEEEEEc-----CCeEEEEECCCCee-eEEeecccccceEEEEecC-CCCEEEEEeCC
Q 009993 271 KVLR---HS-DWVYGLA--PHDTTVASTS-----GSDVYIWDTNSGCL-LTVVNGAHVGNTKSLARSH-TGDFLFTGGED 337 (520)
Q Consensus 271 ~~~~---~~-~~v~~~~--~~~~~l~~~~-----d~~i~iwd~~~~~~-~~~~~~~~~~~i~~l~~s~-~~~~l~tg~~d 337 (520)
..+. ++ .+..+++ ..++.+++|. +..|.+||.+..+. +..+...|...|+++.|+| +.++|++|+.|
T Consensus 108 a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvD 187 (376)
T KOG1188|consen 108 ARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVD 187 (376)
T ss_pred hheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeeccc
Confidence 6654 33 4667777 3677888776 35699999998876 7777778999999999999 55799999999
Q ss_pred CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcccccCCCCCC-----------
Q 009993 338 GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSG----------- 403 (520)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~----------- 403 (520)
|.|.+||+...... ..+.....|...|.++.|.+ +.|.+-+...+..+|+++.+.........
T Consensus 188 GLvnlfD~~~d~Ee---DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~ 264 (376)
T KOG1188|consen 188 GLVNLFDTKKDNEE---DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKED 264 (376)
T ss_pred ceEEeeecCCCcch---hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhh
Confidence 99999999876322 23444456788899999954 47999999999999999875422211110
Q ss_pred ------------C-c-------------eeeee-----ecCCCcccccC-cceeeEEEEec--CCEEEEecCCCeEEEEe
Q 009993 404 ------------K-R-------------VSRVI-----EVEPPQRMLHG-FECNLLSVDIG--ADRIVCGGEEGIVRIWN 449 (520)
Q Consensus 404 ------------~-~-------------~~~~~-----~~~~~~~~~~~-~~~~v~~~~~~--~~~l~sg~~Dg~v~iwd 449 (520)
. . ..++. ........+++ |...|.++.++ ++.+.|||+||.+.+|.
T Consensus 265 ~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 265 NCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred hhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 0 0 00000 11112233444 44445555554 45999999999999999
Q ss_pred CCchHh
Q 009993 450 FSQAFE 455 (520)
Q Consensus 450 ~~~~~~ 455 (520)
.+...+
T Consensus 345 ~~da~e 350 (376)
T KOG1188|consen 345 VEDATE 350 (376)
T ss_pred cCCccc
Confidence 755443
No 156
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.83 E-value=5.5e-18 Score=160.40 Aligned_cols=240 Identities=13% Similarity=0.092 Sum_probs=168.2
Q ss_pred hhhhhccccccEEEEEEccCCCEE-EEEeCCCeEEEEECCCCcEEEEeCCCC-ceEEEEecCCCEEEEE-eCCCcEEEEE
Q 009993 134 LIDVLYGHTEAVLTVFVLASAKLL-FTSGYDSIVRMWHLEDGFSIASSKPLG-CTIRAVAADKKLLVAG-GTDGFIHCWR 210 (520)
Q Consensus 134 ~~~~l~~h~~~V~~l~~~~~~~~l-~sgs~dg~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~l~sg-~~dg~i~vwd 210 (520)
....+.+|.. +.+++|+|+++.+ ++++.++.|++||..+++.+..+..+. ....+++++++.++++ +.|+.|++||
T Consensus 23 ~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d 101 (300)
T TIGR03866 23 VTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVID 101 (300)
T ss_pred eEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEE
Confidence 3455665544 6789999999876 567789999999999998877665433 3445667898877654 5689999999
Q ss_pred cccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCC-eEEEEECCCCcEEEEeeeccCEE--EEeeC
Q 009993 211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM-TVRVWDRALLKCLKVLRHSDWVY--GLAPH 285 (520)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg-~v~iwd~~~~~~~~~~~~~~~v~--~~~~~ 285 (520)
+.+.. ....+. +...+.++++ ++..+++++.++ .+.+||..+++....+....... .+.++
T Consensus 102 ~~~~~-------------~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~d 167 (300)
T TIGR03866 102 IETRK-------------VLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTAD 167 (300)
T ss_pred CCCCe-------------EEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCC
Confidence 87642 122222 2234567787 678888888765 57788998887766554333333 44588
Q ss_pred CCEEEEE-c-CCeEEEEECCCCeeeEEeecc----c--ccceEEEEecCCCCEEEE-EeCCCeEEEEEcccCccccceee
Q 009993 286 DTTVAST-S-GSDVYIWDTNSGCLLTVVNGA----H--VGNTKSLARSHTGDFLFT-GGEDGAIHMYEIINDCTEANVLL 356 (520)
Q Consensus 286 ~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~----~--~~~i~~l~~s~~~~~l~t-g~~dg~i~iwd~~~~~~~~~~~~ 356 (520)
++.++++ . ++.|++||+++++.+..+... + ......++|+|+++++++ .+.++.+.+||+++. +.
T Consensus 168 g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~------~~ 241 (300)
T TIGR03866 168 GKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY------EV 241 (300)
T ss_pred CCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC------cE
Confidence 8887554 4 899999999999877665411 1 112356889999998654 455678999999877 33
Q ss_pred eeeecCCcCCEEEEEecC--CEEEEE-eCCCcEEEEeCCccc
Q 009993 357 VATWIPHTGPVNSLAFEF--PWLVSA-AGDGKLSLIDVRKLL 395 (520)
Q Consensus 357 ~~~~~~h~~~v~~l~~~~--~~l~s~-s~dg~i~vwd~~~~~ 395 (520)
...+ .+...+.+++|+| .+|+++ +.+|.|.+||+.+..
T Consensus 242 ~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 242 LDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred EEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 3333 2345788999976 577776 568999999999853
No 157
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.9e-20 Score=187.79 Aligned_cols=276 Identities=15% Similarity=0.134 Sum_probs=199.5
Q ss_pred EEEEccCCC-EEEEE----------eCCCeEEEEECCCC--c----EEEEeC-CCCceEEEEecCCC----EEEEEeCCC
Q 009993 147 TVFVLASAK-LLFTS----------GYDSIVRMWHLEDG--F----SIASSK-PLGCTIRAVAADKK----LLVAGGTDG 204 (520)
Q Consensus 147 ~l~~~~~~~-~l~sg----------s~dg~v~vwd~~~~--~----~~~~~~-~~~~~v~~~~~~~~----~l~sg~~dg 204 (520)
.++|+|.+. ++++| +.+.++-||.+.-. . .+..+. .+.-.-..+.+.+. .|+.|..||
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG 90 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDG 90 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCC
Confidence 457888775 55554 23455666655322 1 222221 11122233443333 588999999
Q ss_pred cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCcEEEEee---eccC
Q 009993 205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDW 278 (520)
Q Consensus 205 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~ 278 (520)
.|.+||...- ........+.+...|++.|..+.| .++.|++|+.||.|.|||+...+.-.... ..+.
T Consensus 91 ~I~ly~p~~~-------~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~e 163 (1049)
T KOG0307|consen 91 NIVLYDPASI-------IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSE 163 (1049)
T ss_pred ceEEecchhh-------ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCccc
Confidence 9999997542 112334456677789999999999 45799999999999999998765555442 5677
Q ss_pred EEEEeeC---CCEEEEEc-CCeEEEEECCCCeeeEEeecccc--cceEEEEecCCCC-EEEEEeCCC---eEEEEEcccC
Q 009993 279 VYGLAPH---DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHV--GNTKSLARSHTGD-FLFTGGEDG---AIHMYEIIND 348 (520)
Q Consensus 279 v~~~~~~---~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~--~~i~~l~~s~~~~-~l~tg~~dg---~i~iwd~~~~ 348 (520)
|.+++.+ .+.|++++ +|.+.|||++..+.+..+.. +. ..+..++|+|+.. .++++++|. .|.+||+|..
T Consensus 164 I~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~-~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a 242 (1049)
T KOG0307|consen 164 IKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD-TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA 242 (1049)
T ss_pred ceEeccchhhhHHhhccCCCCCceeccccCCCccccccc-CCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc
Confidence 8888844 56788888 78999999999988877763 33 3578999999764 566666553 5999999987
Q ss_pred ccccceeeeeeecCCcCCEEEEEec---CCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCccee
Q 009993 349 CTEANVLLVATWIPHTGPVNSLAFE---FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECN 425 (520)
Q Consensus 349 ~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (520)
. .+++.+.+|...|.++.|. +.+|++++.|+.|.+|+.+++... ..+......
T Consensus 243 s-----sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl-------------------~~~p~~~nW 298 (1049)
T KOG0307|consen 243 S-----SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVL-------------------GELPAQGNW 298 (1049)
T ss_pred C-----CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEe-------------------eecCCCCcc
Confidence 5 5788889999999999995 479999999999999999985322 223334456
Q ss_pred eEEEEecCC---EEEEecCCCeEEEEeCCchH
Q 009993 426 LLSVDIGAD---RIVCGGEEGIVRIWNFSQAF 454 (520)
Q Consensus 426 v~~~~~~~~---~l~sg~~Dg~v~iwd~~~~~ 454 (520)
++.+.|.++ .+++++.||.|.||.+....
T Consensus 299 ~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 299 CFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 777888765 89999999999999997654
No 158
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1e-18 Score=173.34 Aligned_cols=300 Identities=16% Similarity=0.228 Sum_probs=200.9
Q ss_pred ccHHHhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCC---ceEEEEe----cCCCEEEEEe
Q 009993 129 KSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG---CTIRAVA----ADKKLLVAGG 201 (520)
Q Consensus 129 ~~W~~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~---~~v~~~~----~~~~~l~sg~ 201 (520)
-.|++...+ +...+-..+.|+|-...++++...-.|+|||.+.++.+..|..+. ..|..+. .|..++++|+
T Consensus 1053 ~~W~~~~~~--~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas 1130 (1387)
T KOG1517|consen 1053 GNWDQKFMT--GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTAS 1130 (1387)
T ss_pred cchHHHHHh--cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeec
Confidence 456644333 333355677889988899999888889999999999988876543 3444444 5667899999
Q ss_pred CCCcEEEEEcccC---cceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee--
Q 009993 202 TDGFIHCWRAVEV---LPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-- 274 (520)
Q Consensus 202 ~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-- 274 (520)
.||.|+||+-... ...+...- ... .-.+.+-.+.=.-+.| ...+|++++.-..|+|||.....+...+.
T Consensus 1131 ~dGvIRIwk~y~~~~~~~eLVTaw--~~L--s~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~ 1206 (1387)
T KOG1517|consen 1131 SDGVIRIWKDYADKWKKPELVTAW--SSL--SDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYG 1206 (1387)
T ss_pred cCceEEEecccccccCCceeEEee--ccc--cccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccC
Confidence 9999999974221 11111000 000 0001111111133455 44566666667899999999888888776
Q ss_pred eccCEEEEe---eCCCEEEEEc-CCeEEEEECCCCee---eEEeecccccc--eEEEEecCCCC-EEEEEeCCCeEEEEE
Q 009993 275 HSDWVYGLA---PHDTTVASTS-GSDVYIWDTNSGCL---LTVVNGAHVGN--TKSLARSHTGD-FLFTGGEDGAIHMYE 344 (520)
Q Consensus 275 ~~~~v~~~~---~~~~~l~~~~-d~~i~iwd~~~~~~---~~~~~~~~~~~--i~~l~~s~~~~-~l~tg~~dg~i~iwd 344 (520)
....|++++ ..|+.+++|. ||.|++||.+.... +.... .|... |..+.+.+.|- .|++|+.||.|++||
T Consensus 1207 s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R-~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~D 1285 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR-EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLD 1285 (1387)
T ss_pred CCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec-ccCCcccceeEEeecCCCcceeeeccCCeEEEEe
Confidence 566778887 5688999998 99999999986533 34443 57776 99999988765 499999999999999
Q ss_pred cccCccccceeeeeeecCCc--C-CEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccc
Q 009993 345 IINDCTEANVLLVATWIPHT--G-PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML 419 (520)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~h~--~-~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (520)
++...... ..+...|. + ..+++..++ ..+++|+. +.|+||++......... .....+
T Consensus 1286 lR~~~~e~----~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k-------------~n~~F~ 1347 (1387)
T KOG1517|consen 1286 LRMSSKET----FLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIK-------------YNPGFM 1347 (1387)
T ss_pred cccCcccc----cceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccc-------------cCcccc
Confidence 99863221 12222232 3 588998865 78999998 99999999764222111 111111
Q ss_pred cCcceeeEEEEecCC--EEEEecCCCeEEEEeCCch
Q 009993 420 HGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQA 453 (520)
Q Consensus 420 ~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~~ 453 (520)
......+.|+.|++. .+|+|+.|.+|.||..+.+
T Consensus 1348 ~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 222234466666665 8999999999999988765
No 159
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=6.3e-19 Score=160.05 Aligned_cols=267 Identities=18% Similarity=0.224 Sum_probs=198.3
Q ss_pred hhhhhcCCCCCCCCCCCCC-CCcccHH------HhhhhhccccccEEEEEEccCCC-EEEEEeCCCeEEEEECCCCcEEE
Q 009993 107 FYCERWGLPIASAPLGAGF-SDDKSWK------ELIDVLYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIA 178 (520)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~-~~~~~W~------~~~~~l~~h~~~V~~l~~~~~~~-~l~sgs~dg~v~vwd~~~~~~~~ 178 (520)
+.+..|+ |...+++..|. ...+++. ..++.+.--.-+|.+..|.|+|. .+++++.-...+.||+.+.+..+
T Consensus 216 I~sv~FH-p~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k 294 (514)
T KOG2055|consen 216 ITSVQFH-PTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTK 294 (514)
T ss_pred ceEEEec-CCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccccc
Confidence 3455555 45455544442 2223333 55777777788999999999998 99999999999999999886543
Q ss_pred E--eCCCCc---eEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEE
Q 009993 179 S--SKPLGC---TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIY 251 (520)
Q Consensus 179 ~--~~~~~~---~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~ 251 (520)
. ..++.. .-..+++++++|+..+..|.|.+....+++ .+. -..-.+.|..++| ++..|+
T Consensus 295 ~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e-------------li~-s~KieG~v~~~~fsSdsk~l~ 360 (514)
T KOG2055|consen 295 LKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE-------------LIT-SFKIEGVVSDFTFSSDSKELL 360 (514)
T ss_pred ccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh-------------hhh-eeeeccEEeeEEEecCCcEEE
Confidence 3 333332 234556999999999999999999877763 111 1234678999999 788899
Q ss_pred EEecCCeEEEEECCCCcEEEEeeeccCEE----EEeeCCCEEEEEc-CCeEEEEECCC------CeeeEEeecccccceE
Q 009993 252 SGSWDMTVRVWDRALLKCLKVLRHSDWVY----GLAPHDTTVASTS-GSDVYIWDTNS------GCLLTVVNGAHVGNTK 320 (520)
Q Consensus 252 s~s~dg~v~iwd~~~~~~~~~~~~~~~v~----~~~~~~~~l~~~~-d~~i~iwd~~~------~~~~~~~~~~~~~~i~ 320 (520)
+.+.+|.|.+||+++..+++.+...+.|. |++.++.++++|+ .|.|.|||.++ .+++..+. .-...|+
T Consensus 361 ~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d-NLtt~It 439 (514)
T KOG2055|consen 361 ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD-NLTTAIT 439 (514)
T ss_pred EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh-hhheeee
Confidence 99999999999999999999998555543 4458999999999 69999999754 35555554 3567899
Q ss_pred EEEecCCCCEEEEEeC--CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCC
Q 009993 321 SLARSHTGDFLFTGGE--DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR 392 (520)
Q Consensus 321 ~l~~s~~~~~l~tg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~ 392 (520)
+|.|+|++++|+.++. +..+++-.+.....-.++.. ....-+.|+|++|+| .+|+.|..+|.|.+|.+.
T Consensus 440 sl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~---~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 440 SLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPT---SNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeCcchhhhhhhhhccccceEEEeccceeeeccCCC---CCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 9999999999887765 56788887766522111111 123345799999988 699999999999999875
No 160
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=5.3e-18 Score=141.66 Aligned_cols=241 Identities=17% Similarity=0.193 Sum_probs=173.5
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEECCCC----------cEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcc
Q 009993 143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG----------FSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAV 212 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~ 212 (520)
..|.+-+++|.+++|++|+.+|+|.+..+.+- ..+-..++|..++..+.....+|++|+. |.|+-|...
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~ 89 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWN 89 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeeh
Confidence 34556678999999999999999999988532 3445568999999999977888888775 999999886
Q ss_pred cCcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCC
Q 009993 213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDT 287 (520)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~ 287 (520)
+.......-..-+...+...-...-..|+++..++ +-++.++.|+.++-||+++|+...+++ |.+.|.++. ....
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~ 169 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG 169 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc
Confidence 54321000000000001111011224577777753 567777789999999999999999998 999999988 4455
Q ss_pred EEEEEc-CCeEEEEECCCCeeeEEeecc--------c-ccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeee
Q 009993 288 TVASTS-GSDVYIWDTNSGCLLTVVNGA--------H-VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV 357 (520)
Q Consensus 288 ~l~~~~-d~~i~iwd~~~~~~~~~~~~~--------~-~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~ 357 (520)
.+++|+ ||++++||.++++.+..+... | ...|.+++. +.+++++|+ ...+.+|.++.. .+.
T Consensus 170 qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrss------e~t 240 (325)
T KOG0649|consen 170 QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSS------EST 240 (325)
T ss_pred ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCC------Cce
Confidence 666777 999999999999998887631 1 223555554 567888775 456999999988 333
Q ss_pred eeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcc
Q 009993 358 ATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 358 ~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~ 394 (520)
..+ +-.++|..+.|..+.+++++..+.|.-|.+..-
T Consensus 241 ~vf-pipa~v~~v~F~~d~vl~~G~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 241 CVF-PIPARVHLVDFVDDCVLIGGEGNHVQSYTLNGV 276 (325)
T ss_pred EEE-ecccceeEeeeecceEEEeccccceeeeeeccE
Confidence 333 335578889999999999999999999988753
No 161
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.82 E-value=3.5e-18 Score=148.47 Aligned_cols=268 Identities=18% Similarity=0.202 Sum_probs=186.4
Q ss_pred EEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCc--cccceEEeccCCCCeEEEEE---------cCCEEEEEecCC
Q 009993 189 AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSE--KQNTQFRLWEHEGPITSLAL---------DLTRIYSGSWDM 257 (520)
Q Consensus 189 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~l~~---------~~~~l~s~s~dg 257 (520)
.++|||..|++-+.|..+++|++.......- ..+.. .......+ .....|...+| +.+++++.+.|.
T Consensus 56 kWSPDGSciL~~sedn~l~~~nlP~dlys~~-~~~~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 56 KWSPDGSCILSLSEDNCLNCWNLPFDLYSKK-ADGPLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred eeCCCCceEEeecccCeeeEEecChhhcccC-CCCccccccceeEEe-ccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence 5789999999999999999999754211000 00000 01111111 23456677776 236789999999
Q ss_pred eEEEEECCCCcEEEEee---eccCE-----EEEeeCCCEEEEEcCCeEEEEEC-CCCeeeE---Ee---ecccccceEEE
Q 009993 258 TVRVWDRALLKCLKVLR---HSDWV-----YGLAPHDTTVASTSGSDVYIWDT-NSGCLLT---VV---NGAHVGNTKSL 322 (520)
Q Consensus 258 ~v~iwd~~~~~~~~~~~---~~~~v-----~~~~~~~~~l~~~~d~~i~iwd~-~~~~~~~---~~---~~~~~~~i~~l 322 (520)
-|++||.-+|+....+. |.+.+ .+++++|..|++|....|++||+ +.|..-. ++ +.+..+-+.++
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~ 213 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCF 213 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeee
Confidence 99999999999888776 44444 34559999999999999999999 5553211 11 11346778999
Q ss_pred EecCCC-CEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEec--CCEEEEEeC-CCcEEEEeCCcccccC
Q 009993 323 ARSHTG-DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAG-DGKLSLIDVRKLLRSG 398 (520)
Q Consensus 323 ~~s~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-dg~i~vwd~~~~~~~~ 398 (520)
+|+|.. ..+++|+....+-||.-... .++..+.+|.+.|+.+.|. ++.|++|+. |-.|..||++....
T Consensus 214 a~sP~~~~~~a~gsY~q~~giy~~~~~------~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~-- 285 (406)
T KOG2919|consen 214 AFSPMDSKTLAVGSYGQRVGIYNDDGR------RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD-- 285 (406)
T ss_pred eccCCCCcceeeecccceeeeEecCCC------CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc--
Confidence 999954 58999999999999988777 6788899999999999995 578888875 78899999997422
Q ss_pred CCCCCCceeeeeecCCCcccccCcce-----eeEEEEecCCEEEEecCCCeEEEEeCCc-hHhHHHHhhhhcccccchhh
Q 009993 399 RPTSGKRVSRVIEVEPPQRMLHGFEC-----NLLSVDIGADRIVCGGEEGIVRIWNFSQ-AFEIERRARALRGIRLENRM 472 (520)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~l~sg~~Dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~ 472 (520)
+.-.+..|.. --+.+++.++.|++|+.||.|++||+.. +.++..... .
T Consensus 286 ----------------pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~----------~ 339 (406)
T KOG2919|consen 286 ----------------PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN----------Y 339 (406)
T ss_pred ----------------hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccc----------c
Confidence 2222222222 2456677788999999999999999987 432322211 1
Q ss_pred hhccceeeeccCCCcccccc
Q 009993 473 RRRKLQTEMSSKGGRTDQCS 492 (520)
Q Consensus 473 ~~~~~~~~~s~~g~~~~~~s 492 (520)
..-...++++|-=..+++++
T Consensus 340 sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 340 SDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred cccccceecCcccceeeecc
Confidence 22345666777644444444
No 162
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.81 E-value=3.6e-16 Score=138.66 Aligned_cols=232 Identities=16% Similarity=0.193 Sum_probs=179.6
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCc--EEEEEcccCccee
Q 009993 141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGF--IHCWRAVEVLPHL 218 (520)
Q Consensus 141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~--i~vwd~~~~~~~~ 218 (520)
....+..+.|+.+...|..|+.|| -++|+.+...........+..|...-....++|..+.+.. +++.+.+.+
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~---- 78 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKK---- 78 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccC----
Confidence 345677888999999999999999 6888877655433333445566666677777777666543 788877543
Q ss_pred eeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee----eccCEEEEeeC--CCEEEEE
Q 009993 219 FDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR----HSDWVYGLAPH--DTTVAST 292 (520)
Q Consensus 219 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~----~~~~v~~~~~~--~~~l~~~ 292 (520)
....-.....+|.++.++.++|+++=.+. |+|||+++.+.++++. +...+.+++++ +.+++--
T Consensus 79 ----------~~ICe~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp 147 (391)
T KOG2110|consen 79 ----------TTICEIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYP 147 (391)
T ss_pred ----------ceEEEEecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEec
Confidence 22222234678999999999998888765 9999999999999886 44557777754 4466654
Q ss_pred c---CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCe-EEEEEcccCccccceeeeeeecCC--cCC
Q 009993 293 S---GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA-IHMYEIINDCTEANVLLVATWIPH--TGP 366 (520)
Q Consensus 293 ~---d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~-i~iwd~~~~~~~~~~~~~~~~~~h--~~~ 366 (520)
+ .|.|.+||..+-+++..+. .|.+++-+++|+++|.+|||+++.|+ ||||.+.++ ..+..++.. ...
T Consensus 148 ~s~t~GdV~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G------~kl~eFRRG~~~~~ 220 (391)
T KOG2110|consen 148 GSTTSGDVVLFDTINLQPVNTIN-AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG------QKLYEFRRGTYPVS 220 (391)
T ss_pred CCCCCceEEEEEcccceeeeEEE-ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc------cEeeeeeCCceeeE
Confidence 4 4899999999999999998 79999999999999999999999998 799999998 455555543 346
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEeCCccc
Q 009993 367 VNSLAFEF--PWLVSAAGDGKLSLIDVRKLL 395 (520)
Q Consensus 367 v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~ 395 (520)
|.+++|++ ++|++.|..++|.|+.+..-.
T Consensus 221 IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 221 IYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 88999976 699999999999999998643
No 163
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.80 E-value=1.7e-19 Score=174.70 Aligned_cols=277 Identities=19% Similarity=0.257 Sum_probs=203.7
Q ss_pred HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009993 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR 210 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd 210 (520)
+.++.|.||..+|+|+.|...|.++++|+.|..|+||.++++.++....+|...++.++ .++.++++++.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 45788999999999999999999999999999999999999999999999999999887 5666889999999999999
Q ss_pred cccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee------eccCEEEEe-
Q 009993 211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR------HSDWVYGLA- 283 (520)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~------~~~~v~~~~- 283 (520)
+.++. ++..+.+|++.|++++|.+.. +.+.||++++||.+ ...+.... ..+-+.++.
T Consensus 261 l~~~~-------------pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~ 324 (1113)
T KOG0644|consen 261 LPDGA-------------PVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILF 324 (1113)
T ss_pred cCCCc-------------hHHHHhccccceeeeccCccc--cCCCCCceEecccc-ccccccCCCCCCcccccceeeeec
Confidence 98863 566788999999999998755 88899999999987 22211111 222333333
Q ss_pred -eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCC-CCEEEEEeCCCeEEEEEcccCccccceeeeeee
Q 009993 284 -PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT-GDFLFTGGEDGAIHMYEIINDCTEANVLLVATW 360 (520)
Q Consensus 284 -~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~ 360 (520)
..+.-+.+++ |+.-..|...... .+...+.-+.++.+ ..+.+++-.+-.+.+|++.++ .....+
T Consensus 325 ~~~~~~f~Tgs~d~ea~n~e~~~l~-------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g------~l~H~l 391 (1113)
T KOG0644|consen 325 ENNGDRFLTGSRDGEARNHEFEQLA-------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG------QLLHNL 391 (1113)
T ss_pred cccccccccccCCcccccchhhHhh-------hhccceEEEeccccccccceeeeeeeEeeeeecccc------hhhhhh
Confidence 5566677777 7776666543211 11111112222212 245667777888999999999 678888
Q ss_pred cCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceee-EEEEecCCEE
Q 009993 361 IPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNL-LSVDIGADRI 436 (520)
Q Consensus 361 ~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~l 436 (520)
.+|...+..+.++| ....+++.||...|||+-.+... .....+|...+ -.++.+|..+
T Consensus 392 ~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi------------------k~y~~gh~kl~d~kFSqdgts~ 453 (1113)
T KOG0644|consen 392 MGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI------------------KHYFIGHGKLVDGKFSQDGTSI 453 (1113)
T ss_pred cccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcc------------------eeeecccceeeccccCCCCceE
Confidence 89999999999965 67889999999999999875322 11122333222 2344555677
Q ss_pred EEecCCCeEEEEeCCchHhH
Q 009993 437 VCGGEEGIVRIWNFSQAFEI 456 (520)
Q Consensus 437 ~sg~~Dg~v~iwd~~~~~~~ 456 (520)
+....-|.++|.....+...
T Consensus 454 ~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 454 ALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred ecCCCCCceEEeccCCCccc
Confidence 77777888888877665543
No 164
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.80 E-value=1.3e-18 Score=146.94 Aligned_cols=277 Identities=17% Similarity=0.204 Sum_probs=188.4
Q ss_pred hhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC-CCCceEEEEe-cCCCEEEEEeCCCcEEEEEccc
Q 009993 136 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK-PLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVE 213 (520)
Q Consensus 136 ~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~ 213 (520)
-.|++|.+.|+++.|..+++ |.+|..-|.|++|++.+......+. .+...|+.+. -.+..+.+-+.|+.+.+|++..
T Consensus 8 fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred eEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccC
Confidence 45779999999999987665 9999999999999999998888888 5667777776 3347889999999999999865
Q ss_pred CcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCC-e-----------EEEEECCCCcEEEEee-----ec
Q 009993 214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDM-T-----------VRVWDRALLKCLKVLR-----HS 276 (520)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg-~-----------v~iwd~~~~~~~~~~~-----~~ 276 (520)
+. ....|.-.++++.|..--+...+... . +.+-|......+.... ..
T Consensus 87 s~----------------~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Kl 150 (323)
T KOG0322|consen 87 SA----------------FISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKL 150 (323)
T ss_pred cc----------------eEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhcccc
Confidence 32 11123344445555322222222211 1 1222221111122111 34
Q ss_pred cCEEEEe---eCC-C-EEEEEc-CCeEEEEECCCCeeeEEee---------cccccceEEEEecCCCCEEEEEeCCCeEE
Q 009993 277 DWVYGLA---PHD-T-TVASTS-GSDVYIWDTNSGCLLTVVN---------GAHVGNTKSLARSHTGDFLFTGGEDGAIH 341 (520)
Q Consensus 277 ~~v~~~~---~~~-~-~l~~~~-d~~i~iwd~~~~~~~~~~~---------~~~~~~i~~l~~s~~~~~l~tg~~dg~i~ 341 (520)
+.+++.. ..+ . ++++|. +|.+.+||+.++..+..++ ..|..+|.++.|.+.-..=++|+.+..+.
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV 230 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence 5666666 222 2 344555 8999999999984333222 24888999999988666667888888999
Q ss_pred EEEcccCccccceeeeeeecCCcCCEEEEEe--cCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccc
Q 009993 342 MYEIINDCTEANVLLVATWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML 419 (520)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (520)
.|++......-+.....++. .-.|..+.. +++.+++++.|+.|+||..++ ..+..++
T Consensus 231 ~~Sl~~s~gslq~~~e~~lk--npGv~gvrIRpD~KIlATAGWD~RiRVyswrt-------------------l~pLAVL 289 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIRKEITLK--NPGVSGVRIRPDGKILATAGWDHRIRVYSWRT-------------------LNPLAVL 289 (323)
T ss_pred eeeeccccCcccccceEEec--CCCccceEEccCCcEEeecccCCcEEEEEecc-------------------CCchhhh
Confidence 99987652111111222222 223444444 678999999999999999998 4556677
Q ss_pred cCcceeeEEEEecCC--EEEEecCCCeEEEEeC
Q 009993 420 HGFECNLLSVDIGAD--RIVCGGEEGIVRIWNF 450 (520)
Q Consensus 420 ~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~ 450 (520)
.-|...|.+++|+++ .+|++|.|++|.+|++
T Consensus 290 kyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 290 KYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 888888988888876 9999999999999986
No 165
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=7.8e-19 Score=160.53 Aligned_cols=291 Identities=19% Similarity=0.192 Sum_probs=214.3
Q ss_pred HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC-CCCceEEE--Ee--cCCCEEEEEeCCCcEE
Q 009993 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK-PLGCTIRA--VA--ADKKLLVAGGTDGFIH 207 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~-~~~~~v~~--~~--~~~~~l~sg~~dg~i~ 207 (520)
.+...|.+|.+.|..|.|+..|..|++||.|..|.+||...+.....+. +|...|.. |- .+...+++.+.||.++
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 4467789999999999999999999999999999999999998877765 67665543 22 3456799999999999
Q ss_pred EEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCcEEEEee----ecc---
Q 009993 208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR----HSD--- 277 (520)
Q Consensus 208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~~----~~~--- 277 (520)
+=.+... ........+..|.++|..++. ++..|++++.|+.+.-+|+++......+. +..
T Consensus 213 ~s~i~~t----------~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v 282 (559)
T KOG1334|consen 213 VSEILET----------GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERV 282 (559)
T ss_pred eeeeccc----------cceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccce
Confidence 8765332 123345667789999999999 55779999999999999998876544442 222
Q ss_pred CEEEEe--e-CCCEEEEEc-CCeEEEEECCCCee------eEEeec-----ccccceEEEEecCCCCEEEEEeCCCeEEE
Q 009993 278 WVYGLA--P-HDTTVASTS-GSDVYIWDTNSGCL------LTVVNG-----AHVGNTKSLARSHTGDFLFTGGEDGAIHM 342 (520)
Q Consensus 278 ~v~~~~--~-~~~~l~~~~-d~~i~iwd~~~~~~------~~~~~~-----~~~~~i~~l~~s~~~~~l~tg~~dg~i~i 342 (520)
...+++ | +...+++++ |..+++||.+.-.. +..+.. ...-.|++++|+.++.-+.++..|-.|++
T Consensus 283 ~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYL 362 (559)
T KOG1334|consen 283 GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYL 362 (559)
T ss_pred eeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEE
Confidence 334454 3 344677777 89999999875322 222221 23457999999988888888888989999
Q ss_pred EEcccCcc--ccce----eee-eeecCCcC--CEEEEEe-cC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeee
Q 009993 343 YEIINDCT--EANV----LLV-ATWIPHTG--PVNSLAF-EF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVI 410 (520)
Q Consensus 343 wd~~~~~~--~~~~----~~~-~~~~~h~~--~v~~l~~-~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 410 (520)
|.-..+.- +... ..+ ..+++|.. .|..+.| .| .++++|+.-|.|.||+-.+
T Consensus 363 F~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t----------------- 425 (559)
T KOG1334|consen 363 FNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT----------------- 425 (559)
T ss_pred eccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecch-----------------
Confidence 95433211 0000 112 23678854 5778888 33 6999999999999999987
Q ss_pred ecCCCcccccCcceeeEEEEecCC--EEEEecCCCeEEEEeCCc
Q 009993 411 EVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQ 452 (520)
Q Consensus 411 ~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~ 452 (520)
...++.+.+-...|.|+.+++. .||+.|-|.-|+||.-.+
T Consensus 426 --~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 426 --GEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred --hHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCc
Confidence 3445555665558899999887 999999999999998743
No 166
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2.6e-17 Score=137.56 Aligned_cols=238 Identities=20% Similarity=0.244 Sum_probs=171.1
Q ss_pred EEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCc
Q 009993 189 AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLK 268 (520)
Q Consensus 189 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~ 268 (520)
+++|.+++|++|..+|.|.+..+.+-....- .+.....+....+|.++|..++|....|++|+. |.|+-|..+...
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa---~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~ 92 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSA---EPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEE 92 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhcccc---CCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhh
Confidence 5678999999999999999998865321111 122334556668999999999999888888885 999999865432
Q ss_pred E------EEEee---e-----ccCEEEEe--eC-CCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEE
Q 009993 269 C------LKVLR---H-----SDWVYGLA--PH-DTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFL 331 (520)
Q Consensus 269 ~------~~~~~---~-----~~~v~~~~--~~-~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 331 (520)
. +.... + -..|+++. |. +..+.+|+|+.++-||+++|+..+.+. +|...+.++.--.....+
T Consensus 93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~qi 171 (325)
T KOG0649|consen 93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANGQI 171 (325)
T ss_pred hhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc-CCcceeeeeeecccCcce
Confidence 2 11111 2 23456655 44 445556669999999999999999997 799999999985556678
Q ss_pred EEEeCCCeEEEEEcccCccccceee---eeeecCCc-CCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCcee
Q 009993 332 FTGGEDGAIHMYEIINDCTEANVLL---VATWIPHT-GPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVS 407 (520)
Q Consensus 332 ~tg~~dg~i~iwd~~~~~~~~~~~~---~~~~~~h~-~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 407 (520)
++|++||++++||.++++....+.+ ...+.+|. ..|.+++-+.++|++|+.- .+.+|.++...
T Consensus 172 lsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp-~lslwhLrsse------------ 238 (325)
T KOG0649|consen 172 LSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP-KLSLWHLRSSE------------ 238 (325)
T ss_pred eecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC-ceeEEeccCCC------------
Confidence 9999999999999999843211111 11122333 3588999999999998754 69999999732
Q ss_pred eeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCc
Q 009993 408 RVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQ 452 (520)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~ 452 (520)
+..++ .....+-.+.|..+.++++|....|.-|.+..
T Consensus 239 -------~t~vf-pipa~v~~v~F~~d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 239 -------STCVF-PIPARVHLVDFVDDCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred -------ceEEE-ecccceeEeeeecceEEEeccccceeeeeecc
Confidence 11111 12244667788889999999888999998764
No 167
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.79 E-value=6.4e-18 Score=153.45 Aligned_cols=284 Identities=18% Similarity=0.197 Sum_probs=192.7
Q ss_pred EEEEeCCCCceEEEEe--cCC--CEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCC
Q 009993 176 SIASSKPLGCTIRAVA--ADK--KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLT 248 (520)
Q Consensus 176 ~~~~~~~~~~~v~~~~--~~~--~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~ 248 (520)
.....+.+...|.++. |.. +.+++|+..|.|-+||+.+.+ ........+..|.++|.+|.| +..
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~---------~d~d~v~~f~~hs~~Vs~l~F~P~n~s 248 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE---------KDKDGVYLFTPHSGPVSGLKFSPANTS 248 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC---------CccCceEEeccCCccccceEecCCChh
Confidence 3334445555665554 443 588999999999999996332 223456677889999999999 557
Q ss_pred EEEEEecCCeEEEEECCCCcEEEEee---eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCee-eEEeecccccceEE
Q 009993 249 RIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCL-LTVVNGAHVGNTKS 321 (520)
Q Consensus 249 ~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~-~~~~~~~~~~~i~~ 321 (520)
.+++.|.||+|+.-|+++...-..+. ......++. .+...++.+. =|...+||++++.. ...+. -|...|.+
T Consensus 249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~-lh~kKI~s 327 (498)
T KOG4328|consen 249 QIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR-LHKKKITS 327 (498)
T ss_pred heeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh-hhhcccce
Confidence 89999999999999998764433333 222333333 3444444444 46999999998765 33333 58889999
Q ss_pred EEecCCC-CEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccC
Q 009993 322 LARSHTG-DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSG 398 (520)
Q Consensus 322 l~~s~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~ 398 (520)
++++|.. .+|+|++.|++.+|||++.-..... +......|...|.+..|+| ..|++.+.|..|+|||..-.....
T Consensus 328 v~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~ 405 (498)
T KOG4328|consen 328 VALNPVCPWFLATASLDQTAKIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKD 405 (498)
T ss_pred eecCCCCchheeecccCcceeeeehhhhcCCCC--cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccC
Confidence 9999954 5789999999999999988654332 2445568999999999987 469999999999999985110000
Q ss_pred CCCCCCceeeeeecCCCcccccCc----ceee--EEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhh
Q 009993 399 RPTSGKRVSRVIEVEPPQRMLHGF----ECNL--LSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRM 472 (520)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~v--~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 472 (520)
.+...+.|.+ .... ..|.|+..++++|-.-..|-|+|-..++.+.++..+..
T Consensus 406 --------------~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~-------- 463 (498)
T KOG4328|consen 406 --------------EPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPES-------- 463 (498)
T ss_pred --------------CccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccc--------
Confidence 1111111111 1112 24455556999999999999999988876665433321
Q ss_pred hhccceeeeccCCCccccccc
Q 009993 473 RRRKLQTEMSSKGGRTDQCSV 493 (520)
Q Consensus 473 ~~~~~~~~~s~~g~~~~~~s~ 493 (520)
..-....+|+|-+..+++++-
T Consensus 464 ~tI~~vn~~HP~~~~~~aG~~ 484 (498)
T KOG4328|consen 464 STIPSVNEFHPMRDTLAAGGN 484 (498)
T ss_pred cccccceeecccccceeccCC
Confidence 011345678888876666553
No 168
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.6e-17 Score=143.98 Aligned_cols=272 Identities=15% Similarity=0.181 Sum_probs=184.8
Q ss_pred ceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEE
Q 009993 185 CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVW 262 (520)
Q Consensus 185 ~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iw 262 (520)
.....|++.|.+||+|+.||.|.+||+.|. .....+.+|..+|++++| +|..|+++|.|..|.+|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~-------------~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lw 92 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF-------------RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLW 92 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc-------------chhhhhhccccceeEEEecCCCCEeeeecCCceeEEE
Confidence 556677899999999999999999999774 245567789999999999 89999999999999999
Q ss_pred ECCCCcEEEEeeeccCEEEEe--eCC-CEEEEEc-CCeEEEEECCCCeeeEEeeccc----ccceEEEEecCCCCEEEEE
Q 009993 263 DRALLKCLKVLRHSDWVYGLA--PHD-TTVASTS-GSDVYIWDTNSGCLLTVVNGAH----VGNTKSLARSHTGDFLFTG 334 (520)
Q Consensus 263 d~~~~~~~~~~~~~~~v~~~~--~~~-~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~----~~~i~~l~~s~~~~~l~tg 334 (520)
|+..|.+++.++...+|+... |.. +.++++- +..-.+.+...+... .+.... .....+..|.+.|+++++|
T Consensus 93 Dl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitG 171 (405)
T KOG1273|consen 93 DLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITG 171 (405)
T ss_pred eccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEEe
Confidence 999999999999999999887 332 3333333 555555555442211 111111 1122334688999999999
Q ss_pred eCCCeEEEEEcccCccccceeeeeeecCCc-CCEEEEEec--CCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeee
Q 009993 335 GEDGAIHMYEIINDCTEANVLLVATWIPHT-GPVNSLAFE--FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE 411 (520)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 411 (520)
...|.+.++|..+. +++..++-.. ..|..+.++ ++.|+.-+.|..|+.|+++......+-..-. .
T Consensus 172 tsKGkllv~~a~t~------e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e------~ 239 (405)
T KOG1273|consen 172 TSKGKLLVYDAETL------ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVE------P 239 (405)
T ss_pred cCcceEEEEecchh------eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcC------h
Confidence 99999999999988 6676665544 677777774 6899999999999999998532221100000 0
Q ss_pred cCCCcccccCcceeeEEEEecCCEEEEec-CCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccc
Q 009993 412 VEPPQRMLHGFECNLLSVDIGADRIVCGG-EEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQ 490 (520)
Q Consensus 412 ~~~~~~~~~~~~~~v~~~~~~~~~l~sg~-~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~ 490 (520)
....+-+.....-...+++-+|.+++.|+ .-..++||.-..|..++-+..... .....+.+.|--..+++
T Consensus 240 ~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg---------E~l~DV~whp~rp~i~s 310 (405)
T KOG1273|consen 240 EHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG---------EELLDVNWHPVRPIIAS 310 (405)
T ss_pred hHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch---------hheeecccccceeeeee
Confidence 00111111122223445555666766665 456899999999887765433321 22345566665555544
Q ss_pred c
Q 009993 491 C 491 (520)
Q Consensus 491 ~ 491 (520)
.
T Consensus 311 i 311 (405)
T KOG1273|consen 311 I 311 (405)
T ss_pred c
Confidence 3
No 169
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.79 E-value=4.2e-18 Score=148.33 Aligned_cols=249 Identities=16% Similarity=0.192 Sum_probs=181.1
Q ss_pred HHHhhhhh--ccccccEEEEEEccC----CCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--c-CCCEEEEEe
Q 009993 131 WKELIDVL--YGHTEAVLTVFVLAS----AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--A-DKKLLVAGG 201 (520)
Q Consensus 131 W~~~~~~l--~~h~~~V~~l~~~~~----~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~sg~ 201 (520)
|-.+++.. ..|....+.++|+-+ ..++|.|+.-|.|+|.|+.+++....+.+|+..|..+. | +.++++++|
T Consensus 76 ~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~S 155 (385)
T KOG1034|consen 76 GIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSAS 155 (385)
T ss_pred ceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEec
Confidence 43444443 247788888999854 45899999999999999999999999999999998876 3 557999999
Q ss_pred CCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEE--------
Q 009993 202 TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLK-------- 271 (520)
Q Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~-------- 271 (520)
.|..|++|++++.... ....-+.+|.+.|.++.| ++.++++++.|.++++|++...+...
T Consensus 156 kD~svRlwnI~~~~Cv----------~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~ 225 (385)
T KOG1034|consen 156 KDHSVRLWNIQTDVCV----------AVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITY 225 (385)
T ss_pred CCceEEEEeccCCeEE----------EEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhccc
Confidence 9999999999886421 112234689999999999 78999999999999999987332110
Q ss_pred -----------------Ee----eeccCEEEEeeCCCEEEEEc-CCeEEEEEC-CCCee-------------eEEeeccc
Q 009993 272 -----------------VL----RHSDWVYGLAPHDTTVASTS-GSDVYIWDT-NSGCL-------------LTVVNGAH 315 (520)
Q Consensus 272 -----------------~~----~~~~~v~~~~~~~~~l~~~~-d~~i~iwd~-~~~~~-------------~~~~~~~~ 315 (520)
.+ .|...|-|+..-|+++++-+ ++.|..|.+ +-++. +..+. -.
T Consensus 226 ~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~-~~ 304 (385)
T KOG1034|consen 226 SPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD-YP 304 (385)
T ss_pred CCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec-cC
Confidence 01 04555555666678888877 899999988 22222 11121 12
Q ss_pred ccceEE--EEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe--cCCEEEEEeCCCcEEEEeC
Q 009993 316 VGNTKS--LARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDV 391 (520)
Q Consensus 316 ~~~i~~--l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~ 391 (520)
...|+- .+|.|-++.||.|...|.|++||++...+........ ......|+..+| ++..|+...+|++|.-||.
T Consensus 305 ~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~--s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 305 MCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTH--SKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEe--ccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 233444 4556778899999999999999999886432222221 122456777777 4689999999999999986
Q ss_pred C
Q 009993 392 R 392 (520)
Q Consensus 392 ~ 392 (520)
.
T Consensus 383 v 383 (385)
T KOG1034|consen 383 V 383 (385)
T ss_pred e
Confidence 4
No 170
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.79 E-value=5e-17 Score=145.64 Aligned_cols=289 Identities=22% Similarity=0.279 Sum_probs=196.4
Q ss_pred cccEEEEEEccCCC-EEEEEeCCCeEEEEECCCCc---------EEEEeCCCCceEEEE--ecCCCEEEEEeCCCcEEEE
Q 009993 142 TEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGF---------SIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCW 209 (520)
Q Consensus 142 ~~~V~~l~~~~~~~-~l~sgs~dg~v~vwd~~~~~---------~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vw 209 (520)
..+|..+.|.+++. .++||+.|..|++|.+..+. .+..+..|...|.++ +++|++|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46899999998765 99999999999999886442 234556777766655 5899999999999999999
Q ss_pred EcccCcceeeeccC-----CccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEE
Q 009993 210 RAVEVLPHLFDISG-----SEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYG 281 (520)
Q Consensus 210 d~~~~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~ 281 (520)
....-. +++... .+.......+.+|...|..++| ++.++++++.|.++++||+..|+....+. |...+..
T Consensus 93 k~~~~~--~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 93 KQGDVR--IFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQG 170 (434)
T ss_pred EecCcC--CccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccce
Confidence 865311 111111 2334456677889999999999 88999999999999999999999999887 8888887
Q ss_pred Ee--eCCCEEEEEc-CCeEEEEECCCCeeeEEee---------c---------ccc----cceEEEEecCCCCEEEEEeC
Q 009993 282 LA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVN---------G---------AHV----GNTKSLARSHTGDFLFTGGE 336 (520)
Q Consensus 282 ~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~---------~---------~~~----~~i~~l~~s~~~~~l~tg~~ 336 (520)
++ |.++++++-+ |...+.+++...+.+.... . -|. .-...++|+|+|.++++.+.
T Consensus 171 vawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag 250 (434)
T KOG1009|consen 171 VAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG 250 (434)
T ss_pred eecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc
Confidence 77 7778888766 7666666655433322111 0 011 12456789999999987532
Q ss_pred ----CC-----eEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-------------------CEEEEEeCCCcEEE
Q 009993 337 ----DG-----AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-------------------PWLVSAAGDGKLSL 388 (520)
Q Consensus 337 ----dg-----~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-------------------~~l~s~s~dg~i~v 388 (520)
.+ +.++|+-..-. .+...+..-..++..+.|+| +.++.......|.|
T Consensus 251 ~~~~g~~~~~n~tYvfsrk~l~-----rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyv 325 (434)
T KOG1009|consen 251 LFKVGGGVFRNTSYVFSRKDLK-----RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYV 325 (434)
T ss_pred eeeeCCceeeceeEeecccccc-----CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEE
Confidence 22 23455433222 33444444455555555533 23344444558999
Q ss_pred EeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEec--CCEEEEecCCCeEEEEeCCchHh
Q 009993 389 IDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVCGGEEGIVRIWNFSQAFE 455 (520)
Q Consensus 389 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~~~~~ 455 (520)
||..+. .+....-.-|-..++.++|+ +..++..+.||...+-.++..+.
T Consensus 326 ydtq~~------------------~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 326 YDTQTL------------------EPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred eccccc------------------cceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 998874 22222223344555555555 45999999999998888876544
No 171
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=2e-18 Score=173.45 Aligned_cols=234 Identities=17% Similarity=0.165 Sum_probs=181.9
Q ss_pred cEEEEEEccCCCE----EEEEeCCCeEEEEECCC---C---cEEEEeCCCCceEEEEe---cCCCEEEEEeCCCcEEEEE
Q 009993 144 AVLTVFVLASAKL----LFTSGYDSIVRMWHLED---G---FSIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWR 210 (520)
Q Consensus 144 ~V~~l~~~~~~~~----l~sgs~dg~v~vwd~~~---~---~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd 210 (520)
+.+.++|.+.|.. |+.|..||.|.+||... + ..+.+...|.+.|..+. ..++.|++|+.||.|.|||
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWD 145 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWD 145 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEec
Confidence 4578888876654 88999999999999865 2 34566788999999887 4566999999999999999
Q ss_pred cccCcceeeeccCCccccceEEeccCCCCeEEEEEcC---CEEEEEecCCeEEEEECCCCcEEEEee-ecc--CEEEEe-
Q 009993 211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL---TRIYSGSWDMTVRVWDRALLKCLKVLR-HSD--WVYGLA- 283 (520)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~--~v~~~~- 283 (520)
+...... +.. . -....+.|.+++|+. ..|++++.+|.+.|||++..+.+-.+. +.. .+..+.
T Consensus 146 lnn~~tP-~~~--------~--~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~W 214 (1049)
T KOG0307|consen 146 LNKPETP-FTP--------G--SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAW 214 (1049)
T ss_pred cCCcCCC-CCC--------C--CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeee
Confidence 9763210 000 0 123467899999944 679999999999999999888777776 333 244455
Q ss_pred -eC-CCEEEEEc-C---CeEEEEECCCCe-eeEEeecccccceEEEEecCCC-CEEEEEeCCCeEEEEEcccCcccccee
Q 009993 284 -PH-DTTVASTS-G---SDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEANVL 355 (520)
Q Consensus 284 -~~-~~~l~~~~-d---~~i~iwd~~~~~-~~~~~~~~~~~~i~~l~~s~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~ 355 (520)
|+ ...+++++ | -.|.+||++.-. +++++ .+|...|.++.|++.+ .++++++.|+.|.+|+.+++ +
T Consensus 215 hP~~aTql~~As~dd~~PviqlWDlR~assP~k~~-~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg------E 287 (1049)
T KOG0307|consen 215 HPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL-EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG------E 287 (1049)
T ss_pred CCCCceeeeeecCCCCCceeEeecccccCCchhhh-cccccceeeeccCCCCchhhhcccCCCCeeEecCCCc------e
Confidence 33 34555555 3 359999998754 45555 4799999999999966 88999999999999999999 7
Q ss_pred eeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCccc
Q 009993 356 LVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLL 395 (520)
Q Consensus 356 ~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~ 395 (520)
.+..+......+..+.|.| ..+++++-||.|.|+.+....
T Consensus 288 vl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 288 VLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred EeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 7888888888999999954 699999999999999998753
No 172
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.77 E-value=8.4e-17 Score=162.48 Aligned_cols=263 Identities=14% Similarity=0.166 Sum_probs=177.9
Q ss_pred ccHH---HhhhhhccccccEEEEEEccCC-CEEEEEeCCCeEEEEECCCC-------cEEEEeCCCCceE--EEEecCCC
Q 009993 129 KSWK---ELIDVLYGHTEAVLTVFVLASA-KLLFTSGYDSIVRMWHLEDG-------FSIASSKPLGCTI--RAVAADKK 195 (520)
Q Consensus 129 ~~W~---~~~~~l~~h~~~V~~l~~~~~~-~~l~sgs~dg~v~vwd~~~~-------~~~~~~~~~~~~v--~~~~~~~~ 195 (520)
.-|+ .++..|..|...|..++.++.. .+++|||.||+|++||...- +...++...+..+ ..+.+.++
T Consensus 1032 ~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1032 PGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred CCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence 3377 6788999999999999998754 99999999999999998532 2223333333444 44458999
Q ss_pred EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccC-CCCeEEE-EE---cCC-EEEEEecCCeEEEEECCCCcE
Q 009993 196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH-EGPITSL-AL---DLT-RIYSGSWDMTVRVWDRALLKC 269 (520)
Q Consensus 196 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l-~~---~~~-~l~s~s~dg~v~iwd~~~~~~ 269 (520)
.+|.|+.||.|.+.++.......... ........+ .+.+.++ ++ ... .++.+...+.|..||+++...
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~------~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~ 1185 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVA------TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD 1185 (1431)
T ss_pred eEEEEcCCCeEEEEEcccccccccee------eeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh
Confidence 99999999999999986531111100 011111111 2334443 33 334 688888889999999998877
Q ss_pred EEEee---eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCC---CEEEE-Ee-CCC
Q 009993 270 LKVLR---HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG---DFLFT-GG-EDG 338 (520)
Q Consensus 270 ~~~~~---~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~---~~l~t-g~-~dg 338 (520)
...++ ..+.|+++. +.+++++.|+ .|.+.+||++-+.++.....++..+++.+..+|-. ...++ |+ ..+
T Consensus 1186 ~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1186 AWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred HHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCC
Confidence 66665 456677766 8889999999 89999999999999988887778889988887733 34444 44 467
Q ss_pred eEEEEEcccCccccceee------eeeec-------CCcCCEEEEEe-c-CCEEEEEeCCCcEEEEeCCccccc
Q 009993 339 AIHMYEIINDCTEANVLL------VATWI-------PHTGPVNSLAF-E-FPWLVSAAGDGKLSLIDVRKLLRS 397 (520)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~------~~~~~-------~h~~~v~~l~~-~-~~~l~s~s~dg~i~vwd~~~~~~~ 397 (520)
.|.+|++.++........ +.... .+.-......+ + ...+.+|+.|..|+.||.......
T Consensus 1266 evs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1266 EVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 899999998843111000 00000 11111111222 2 368999999999999999865443
No 173
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.77 E-value=3.6e-15 Score=148.16 Aligned_cols=283 Identities=28% Similarity=0.466 Sum_probs=211.4
Q ss_pred hhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc-EEEEeCCCCc-eEE--EE-ecCCC-EEEEEeC-CCcEEE
Q 009993 136 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF-SIASSKPLGC-TIR--AV-AADKK-LLVAGGT-DGFIHC 208 (520)
Q Consensus 136 ~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~-~~~~~~~~~~-~v~--~~-~~~~~-~l~sg~~-dg~i~v 208 (520)
..+.+|...|.++.+.+.+..++.++.|+.+.+|+...+. .+..+..+.. .+. .+ .+++. .++..+. |+.+.+
T Consensus 59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 3567999999999999999999999999999999998886 6666665322 222 23 45666 4555444 999999
Q ss_pred EEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec-CCeEEEEECCCCcEEEEee-eccCEEEEe-
Q 009993 209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DMTVRVWDRALLKCLKVLR-HSDWVYGLA- 283 (520)
Q Consensus 209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~-~~~~v~~~~- 283 (520)
|+.... ......+..|...|..+++ ++..+++++. |+.+++|+...+..+..+. |...|.++.
T Consensus 139 ~~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 206 (466)
T COG2319 139 WDLSTP------------GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF 206 (466)
T ss_pred EEecCC------------CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEE
Confidence 998651 2355677889999999999 5567888875 9999999999888887777 788898888
Q ss_pred -eCCC-EEEEEc-CCeEEEEECCCCeeeE-EeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeee
Q 009993 284 -PHDT-TVASTS-GSDVYIWDTNSGCLLT-VVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT 359 (520)
Q Consensus 284 -~~~~-~l~~~~-d~~i~iwd~~~~~~~~-~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~ 359 (520)
+++. .+++++ |+.|++||...+.... .+. +|.... ...|+|++.++++++.|+.+++|+...... ....
T Consensus 207 ~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-----~~~~ 279 (466)
T COG2319 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS-GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS-----LLRT 279 (466)
T ss_pred cCCcceEEEEecCCCcEEEEECCCCcEEeeecC-CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc-----EEEE
Confidence 6666 555535 8999999999887777 454 577665 448999998999999999999999987742 1333
Q ss_pred ecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC--CE
Q 009993 360 WIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DR 435 (520)
Q Consensus 360 ~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~ 435 (520)
+.+|...|.++.|+| ..+++++.|+.+.+||..+....... . ...|...+..+.+.. ..
T Consensus 280 ~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------------~-----~~~~~~~~~~~~~~~~~~~ 342 (466)
T COG2319 280 LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL------------T-----LKGHEGPVSSLSFSPDGSL 342 (466)
T ss_pred EecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEe------------e-----ecccCCceEEEEECCCCCE
Confidence 367889999999987 67888999999999988764221110 0 123443445554421 35
Q ss_pred EEEe-cCCCeEEEEeCCchH
Q 009993 436 IVCG-GEEGIVRIWNFSQAF 454 (520)
Q Consensus 436 l~sg-~~Dg~v~iwd~~~~~ 454 (520)
++.+ ..|+.+++|+.....
T Consensus 343 ~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 343 LVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEeecCCCcEEeeecCCCc
Confidence 5555 688999999998775
No 174
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.1e-16 Score=142.48 Aligned_cols=296 Identities=13% Similarity=0.129 Sum_probs=202.6
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCC------CcEEEEeC-CCCceEEEEe--cCCCEEEEEeCCCc
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED------GFSIASSK-PLGCTIRAVA--ADKKLLVAGGTDGF 205 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~------~~~~~~~~-~~~~~v~~~~--~~~~~l~sg~~dg~ 205 (520)
.+.+.+|.+.|.++.|+.++++|++|+.|..+++|+++. .+++.... .|...|.|+. ..+.++++|..+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 455789999999999999999999999999999999853 34444433 4567888877 56779999999999
Q ss_pred EEEEEcccCcceeeeccCCccccceEEeccC---CCCeEEEEE--cCCEEEEEecCCeEEEEECCCCc-EEEE---eeec
Q 009993 206 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEH---EGPITSLAL--DLTRIYSGSWDMTVRVWDRALLK-CLKV---LRHS 276 (520)
Q Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~-~~~~---~~~~ 276 (520)
|..-|+++.. ......| .+.|..+.. ..+.+++.+.+|.|.+||.+... .+.. -..+
T Consensus 129 VI~HDiEt~q--------------si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~ 194 (609)
T KOG4227|consen 129 VIKHDIETKQ--------------SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSG 194 (609)
T ss_pred eEeeecccce--------------eeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCC
Confidence 9999998753 1222234 348888887 44889999999999999998654 2111 1223
Q ss_pred cCEEEEe---eCCCEEEEEc-CCeEEEEECCCCeee-EEee--ccc---ccceEEEEecCCCCEEEEEeCCCeEEEEEcc
Q 009993 277 DWVYGLA---PHDTTVASTS-GSDVYIWDTNSGCLL-TVVN--GAH---VGNTKSLARSHTGDFLFTGGEDGAIHMYEII 346 (520)
Q Consensus 277 ~~v~~~~---~~~~~l~~~~-d~~i~iwd~~~~~~~-~~~~--~~~---~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~ 346 (520)
....++. ....+|++.+ .+.+-+||.+..+.. .... .+- ...-.++.|+|+|..+.+--....-.+||+-
T Consensus 195 ~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~ 274 (609)
T KOG4227|consen 195 KNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFI 274 (609)
T ss_pred ccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeee
Confidence 3333333 3456777777 688999999875432 1111 011 1123567899999998887776677788887
Q ss_pred cCccccceeeeeeecCCc-------CCEEEEEecC-CEEEEEeCCCcEEEEeCCcccccCCCCC-CC---ceeeeeecCC
Q 009993 347 NDCTEANVLLVATWIPHT-------GPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTS-GK---RVSRVIEVEP 414 (520)
Q Consensus 347 ~~~~~~~~~~~~~~~~h~-------~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~---~~~~~~~~~~ 414 (520)
... .++..+ .|. ..+.+++|-+ ..+++|+.+-.|.+|.+........... +. ....-.-+..
T Consensus 275 S~R-----~~V~k~-D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~ 348 (609)
T KOG4227|consen 275 SQR-----CFVLKS-DHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEK 348 (609)
T ss_pred ccc-----ceeEec-cCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecc
Confidence 752 223322 222 2466777744 5699999999999999975433332111 11 1111112344
Q ss_pred CcccccCcceeeEEEEecCC--EEEEecCCCeEEEEeC
Q 009993 415 PQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNF 450 (520)
Q Consensus 415 ~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~ 450 (520)
...++.||..-+..+.|++. .|++.|-...++||.-
T Consensus 349 ~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 349 ELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred eeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 56678899988888877765 8889999999999963
No 175
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.76 E-value=1e-16 Score=151.91 Aligned_cols=275 Identities=14% Similarity=0.163 Sum_probs=195.5
Q ss_pred HHhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEE
Q 009993 132 KELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCW 209 (520)
Q Consensus 132 ~~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vw 209 (520)
....+....| .|..++|-|||..|+.+.. ..+.+||...|..+.++++|...|.+++ .+|+.+++|+.|..|.+|
T Consensus 4 ~~~~r~~~~h--ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W 80 (1081)
T KOG1538|consen 4 VLTWRDKAEH--CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIW 80 (1081)
T ss_pred hhhhhccccc--chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEe
Confidence 3334444455 8899999999998887764 5699999999999999999999998876 899999999999999999
Q ss_pred EcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eC
Q 009993 210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PH 285 (520)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~ 285 (520)
+-.-. .. --..|++.|.|+.|++ ..+++++-. ..-+|....... ...+....+.+.+ .+
T Consensus 81 ~~klE--------------G~-LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V-~K~kss~R~~~CsWtnD 143 (1081)
T KOG1538|consen 81 TSKLE--------------GI-LKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSV-SKHKSSSRIICCSWTND 143 (1081)
T ss_pred ccccc--------------ce-eeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhH-HhhhhheeEEEeeecCC
Confidence 84321 12 2347999999999976 668888764 467887654332 2222344555555 78
Q ss_pred CCEEEEEc-CCeEEEEECCCCeeeEEe-ecccccceEEEEecCCC-----CEEEEEeCCCeEEEEEcccCccccceeeee
Q 009993 286 DTTVASTS-GSDVYIWDTNSGCLLTVV-NGAHVGNTKSLARSHTG-----DFLFTGGEDGAIHMYEIINDCTEANVLLVA 358 (520)
Q Consensus 286 ~~~l~~~~-d~~i~iwd~~~~~~~~~~-~~~~~~~i~~l~~s~~~-----~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~ 358 (520)
|.+++.|- +|+|.+-+-...+.+..- +.+...+|.+++|+|.. ..+++.....++.+|.+.... +.
T Consensus 144 GqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~-------Ig 216 (1081)
T KOG1538|consen 144 GQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ-------IG 216 (1081)
T ss_pred CcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee-------ec
Confidence 99999999 999999865433333222 24567899999999953 478888888999999886551 21
Q ss_pred eecCCcCCEEEEEe--cCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEE
Q 009993 359 TWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRI 436 (520)
Q Consensus 359 ~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 436 (520)
.-..-.-...|+.+ ++.+++.|+.|+.+.+|.-..- ... .+.. ..|-.....+.|++..+
T Consensus 217 k~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gv-rLG------------Tvg~-----~D~WIWtV~~~PNsQ~v 278 (1081)
T KOG1538|consen 217 KDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGV-RLG------------TVGE-----QDSWIWTVQAKPNSQYV 278 (1081)
T ss_pred ccccCCCCchhheeccCCcEEEEccCCCceEEEeecCe-EEe------------eccc-----cceeEEEEEEccCCceE
Confidence 11111223456666 5689999999999999975431 110 0010 12333344555677799
Q ss_pred EEecCCCeEEEEeCC
Q 009993 437 VCGGEEGIVRIWNFS 451 (520)
Q Consensus 437 ~sg~~Dg~v~iwd~~ 451 (520)
+.|..||+|--|++-
T Consensus 279 ~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 279 VVGCQDGTIACYNLI 293 (1081)
T ss_pred EEEEccCeeehhhhH
Confidence 999999999999975
No 176
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.76 E-value=5.6e-17 Score=144.69 Aligned_cols=209 Identities=17% Similarity=0.257 Sum_probs=160.5
Q ss_pred hhhhccccccEEEEEEcc-CCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEccc
Q 009993 135 IDVLYGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVE 213 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~-~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~ 213 (520)
.-.+.||+++|..++|+| +...||+||.|.+|.||++..+.....+
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l--------------------------------- 120 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL--------------------------------- 120 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc---------------------------------
Confidence 445789999999999998 5678999999999999998765332211
Q ss_pred CcceeeeccCCccccceEEeccCCCCeEEEEEcC---CEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCE
Q 009993 214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL---TRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTT 288 (520)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~ 288 (520)
..++..+.+|...|-.++|++ +.|++++.|.+|.+||+.+++.+.++.|++.|++++ .+|.+
T Consensus 121 -------------tepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~ 187 (472)
T KOG0303|consen 121 -------------TEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSL 187 (472)
T ss_pred -------------ccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCce
Confidence 124456778999999999954 789999999999999999999999999999999988 78999
Q ss_pred EEEEc-CCeEEEEECCCCeeeEEeeccccc-ceEEEEecCCCCEEEEEe---CCCeEEEEEcccCccccceeeeeeecCC
Q 009993 289 VASTS-GSDVYIWDTNSGCLLTVVNGAHVG-NTKSLARSHTGDFLFTGG---EDGAIHMYEIINDCTEANVLLVATWIPH 363 (520)
Q Consensus 289 l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~-~i~~l~~s~~~~~l~tg~---~dg~i~iwd~~~~~~~~~~~~~~~~~~h 363 (520)
+++++ |..|+|||.++++.+..-. +|.+ .-..+.|-.+|.++.||. .+..+-+||..+-+.+ ....++...
T Consensus 188 l~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP---~~~~elDtS 263 (472)
T KOG0303|consen 188 LCTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP---IALQELDTS 263 (472)
T ss_pred eeeecccceeEEEcCCCCcEeeecc-cccCCCcceeEEeccCceeeeccccccccceeccCcccccCc---ceeEEeccC
Confidence 99999 9999999999999998874 5654 445666777888665554 3678999998776432 223333332
Q ss_pred cCCEEEEEecC--C-EEEEEeCCCcEEEEeCCcc
Q 009993 364 TGPVNSLAFEF--P-WLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 364 ~~~v~~l~~~~--~-~l~s~s~dg~i~vwd~~~~ 394 (520)
..|.-=-|++ . ..++|-.|+.|+.|.+...
T Consensus 264 -nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 264 -NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred -CceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 3333333455 3 4456668999999999764
No 177
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=9.5e-16 Score=150.47 Aligned_cols=336 Identities=18% Similarity=0.222 Sum_probs=226.2
Q ss_pred HhhhhhccccccEEEEEEccCC---CEEEEEeCCCeEEEEECCCCcEEEEeCC---------------------------
Q 009993 133 ELIDVLYGHTEAVLTVFVLASA---KLLFTSGYDSIVRMWHLEDGFSIASSKP--------------------------- 182 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~~~~---~~l~sgs~dg~v~vwd~~~~~~~~~~~~--------------------------- 182 (520)
.+++.|.+|..+++.+.+.|.. .++++++.||+|++||...+..++++..
T Consensus 48 ~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~ 127 (792)
T KOG1963|consen 48 ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDY 127 (792)
T ss_pred hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccc
Confidence 6688999999999999999854 4678999999999999876644433210
Q ss_pred ----------------------------------------------------------------------------CCc-
Q 009993 183 ----------------------------------------------------------------------------LGC- 185 (520)
Q Consensus 183 ----------------------------------------------------------------------------~~~- 185 (520)
|..
T Consensus 128 ~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~ 207 (792)
T KOG1963|consen 128 SILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFN 207 (792)
T ss_pred eeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhccc
Confidence 011
Q ss_pred -eEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEE
Q 009993 186 -TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVW 262 (520)
Q Consensus 186 -~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iw 262 (520)
.+.+++|+++++++|..||.|.+|.--.. .........+.=|...|.+++| +|.+|++|+..|.+.+|
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~---------~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~W 278 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGS---------SDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLW 278 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEecccc---------ccccccceEEEecccccceeEEecCCceEeecccceEEEEE
Confidence 11245689999999999999999973221 1112344556678999999999 89999999999999999
Q ss_pred ECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEee----------cccccceEEEEecCCCC
Q 009993 263 DRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVN----------GAHVGNTKSLARSHTGD 329 (520)
Q Consensus 263 d~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~----------~~~~~~i~~l~~s~~~~ 329 (520)
.+.+++....-+..++|..+. +++.+.+... |+.|.+....+......+. ....+-.+.++++|..+
T Consensus 279 q~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 279 QLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred eecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 999998433334788888776 8888887777 9999998876654433332 11244567788999778
Q ss_pred EEEEEeCCCeEEEEEcccCccccceeeeeeecCCc------CCEEEEEec--CCEEEEEeC--------C--CcEEEEeC
Q 009993 330 FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT------GPVNSLAFE--FPWLVSAAG--------D--GKLSLIDV 391 (520)
Q Consensus 330 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~------~~v~~l~~~--~~~l~s~s~--------d--g~i~vwd~ 391 (520)
.++-.+..|.|.+||+.+.....+..... ...+. -.+++++.+ +.+++|+-. | -.+++|-.
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~-~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~ 437 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCD-ENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQY 437 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEe-ecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEE
Confidence 88888999999999998885543332211 11222 234555543 467766543 3 34678877
Q ss_pred CcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC--CEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccc
Q 009993 392 RKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLE 469 (520)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 469 (520)
....+.... .......++-...++++.... ...+|+|.||.++||-+.....+......-......
T Consensus 438 n~~~kt~~L------------~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~ 505 (792)
T KOG1963|consen 438 NPNSKTFIL------------NTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIG 505 (792)
T ss_pred cCCcceeEE------------EEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeee
Confidence 653222110 111111222223333333322 289999999999999997666555544443333344
Q ss_pred hhhhhccceeeeccCCCcccc
Q 009993 470 NRMRRRKLQTEMSSKGGRTDQ 490 (520)
Q Consensus 470 ~~~~~~~~~~~~s~~g~~~~~ 490 (520)
..+++.....+|+.||.-++.
T Consensus 506 sy~k~~i~a~~fs~dGslla~ 526 (792)
T KOG1963|consen 506 SYHKTPITALCFSQDGSLLAV 526 (792)
T ss_pred ccccCcccchhhcCCCcEEEE
Confidence 457788899999999965554
No 178
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.75 E-value=1.4e-16 Score=136.59 Aligned_cols=249 Identities=21% Similarity=0.262 Sum_probs=176.4
Q ss_pred hhhhccccccEEEEEEccC-CCEEEEEeCC-------CeEEEEECCCC---------cEEEEeC-CCCceEEEE--ecCC
Q 009993 135 IDVLYGHTEAVLTVFVLAS-AKLLFTSGYD-------SIVRMWHLEDG---------FSIASSK-PLGCTIRAV--AADK 194 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~-~~~l~sgs~d-------g~v~vwd~~~~---------~~~~~~~-~~~~~v~~~--~~~~ 194 (520)
.++|..|.+.|..++-+|- .++|+|+..+ -.+.||.+... +++..+. .+-..+.|+ .|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 5678889999999999995 4566665442 24779998643 2233333 222344454 4999
Q ss_pred CEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE----cCCEEEEEecCCeEEEEECCCCcEE
Q 009993 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGSWDMTVRVWDRALLKCL 270 (520)
Q Consensus 195 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~dg~v~iwd~~~~~~~ 270 (520)
..+++-. |..|.+|++..+....-.+..+.. .+|....++-+| +++.+++.+ |+++..||+++..+.
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s-------~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSES-------AEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKN 206 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeeccccc-------ccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhh
Confidence 9988776 788999999876432211111111 124555666677 445666554 799999999999988
Q ss_pred EEee--eccCEEEEe--eCC-CEEEEEc-CCeEEEEECCCC-eeeEEeecccccceEEEEecCC-CCEEEEEeCCCeEEE
Q 009993 271 KVLR--HSDWVYGLA--PHD-TTVASTS-GSDVYIWDTNSG-CLLTVVNGAHVGNTKSLARSHT-GDFLFTGGEDGAIHM 342 (520)
Q Consensus 271 ~~~~--~~~~v~~~~--~~~-~~l~~~~-d~~i~iwd~~~~-~~~~~~~~~~~~~i~~l~~s~~-~~~l~tg~~dg~i~i 342 (520)
..+. |...|..+. |+. .+|++|+ ||.|++||.+.- .++..+. +|...|.++.|+|. .+++++|+.|..|.+
T Consensus 207 ~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-~HsHWvW~VRfn~~hdqLiLs~~SDs~V~L 285 (370)
T KOG1007|consen 207 NSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-GHSHWVWAVRFNPEHDQLILSGGSDSAVNL 285 (370)
T ss_pred cchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-CCceEEEEEEecCccceEEEecCCCceeEE
Confidence 8887 888899988 443 3567777 899999999875 4566665 79999999999995 457889999999999
Q ss_pred EEcccCccc------------------cc-----eeeeeeecCCcCCEEEEEec---CCEEEEEeCCCcEEEEeCCc
Q 009993 343 YEIINDCTE------------------AN-----VLLVATWIPHTGPVNSLAFE---FPWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 343 wd~~~~~~~------------------~~-----~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~ 393 (520)
|....-... .. -..+.++..|...|++++|+ |-.+++-+.||.+.|=.+..
T Consensus 286 sca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 286 SCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred EeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 976432210 01 12345678899999999995 56899999999999877654
No 179
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.75 E-value=9.5e-16 Score=150.17 Aligned_cols=261 Identities=16% Similarity=0.156 Sum_probs=176.4
Q ss_pred CCeEEEEECCCC-cEEEEeC-CCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCC
Q 009993 163 DSIVRMWHLEDG-FSIASSK-PLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGP 239 (520)
Q Consensus 163 dg~v~vwd~~~~-~~~~~~~-~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 239 (520)
++.+.||++... .+...+. .....+.+++ .+.++++.|..+|.|.+||+..+...+ ..........|..+
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-------~s~ls~~~~sh~~~ 293 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-------PSGLSALEVSHSEP 293 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-------CcccccccccCCcC
Confidence 357999999876 3333333 2233444455 578899999999999999998764211 11122334578999
Q ss_pred eEEEEE----cCCEEEEEecCCeEEEEECCCCcEEEE-e------------eeccCEEEEe---eCCCEEEEEc-CCeEE
Q 009993 240 ITSLAL----DLTRIYSGSWDMTVRVWDRALLKCLKV-L------------RHSDWVYGLA---PHDTTVASTS-GSDVY 298 (520)
Q Consensus 240 v~~l~~----~~~~l~s~s~dg~v~iwd~~~~~~~~~-~------------~~~~~v~~~~---~~~~~l~~~~-d~~i~ 298 (520)
++.+.| .+.-+++++.||.|..|+++....... . .....+++++ .+...+++|+ +|.|.
T Consensus 294 v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~ 373 (555)
T KOG1587|consen 294 VTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVY 373 (555)
T ss_pred eEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEE
Confidence 999999 235599999999999998865432111 0 1123345555 5677788888 78887
Q ss_pred EEECCCCeee-------EEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcc-cCccccceeeeeeecCCcCCEEEE
Q 009993 299 IWDTNSGCLL-------TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEII-NDCTEANVLLVATWIPHTGPVNSL 370 (520)
Q Consensus 299 iwd~~~~~~~-------~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~-~~~~~~~~~~~~~~~~h~~~v~~l 370 (520)
--+....+.- ......|.++|+++.++|=+..++..+.|.+++||... .. .++..+..+...|+++
T Consensus 374 ~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~------~Pl~~~~~~~~~v~~v 447 (555)
T KOG1587|consen 374 KGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA------SPLLSLDSSPDYVTDV 447 (555)
T ss_pred EEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC------Ccchhhhhccceeeee
Confidence 7443322211 11123588999999999977655554459999999987 44 5777788888889999
Q ss_pred EecC---CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccc--cCcceeeEEEEecCCEEEEecCCCeE
Q 009993 371 AFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML--HGFECNLLSVDIGADRIVCGGEEGIV 445 (520)
Q Consensus 371 ~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~l~sg~~Dg~v 445 (520)
+|+| ..++++..||.|.+||+...... +.... .........++..+..|++|+..|.+
T Consensus 448 aWSptrpavF~~~d~~G~l~iWDLl~~~~~-----------------Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~ 510 (555)
T KOG1587|consen 448 AWSPTRPAVFATVDGDGNLDIWDLLQDDEE-----------------PVLSQKVCSPALTRVRWSPNGKLLAVGDANGTT 510 (555)
T ss_pred EEcCcCceEEEEEcCCCceehhhhhccccC-----------------CcccccccccccceeecCCCCcEEEEecCCCcE
Confidence 9986 58999999999999999863211 11111 11112233444556799999999999
Q ss_pred EEEeCCch
Q 009993 446 RIWNFSQA 453 (520)
Q Consensus 446 ~iwd~~~~ 453 (520)
.+|++...
T Consensus 511 ~~~~l~~~ 518 (555)
T KOG1587|consen 511 HILKLSES 518 (555)
T ss_pred EEEEcCch
Confidence 99999643
No 180
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.75 E-value=1e-14 Score=144.97 Aligned_cols=316 Identities=30% Similarity=0.472 Sum_probs=224.7
Q ss_pred CCCcccHHH-----hhhhhcccc-ccEEEEEE-ccCCC-EEEEEeC-CCeEEEEECCC-CcEEEEeCCCCceEEEE--ec
Q 009993 125 FSDDKSWKE-----LIDVLYGHT-EAVLTVFV-LASAK-LLFTSGY-DSIVRMWHLED-GFSIASSKPLGCTIRAV--AA 192 (520)
Q Consensus 125 ~~~~~~W~~-----~~~~l~~h~-~~V~~l~~-~~~~~-~l~sgs~-dg~v~vwd~~~-~~~~~~~~~~~~~v~~~--~~ 192 (520)
......|+. ....+.++. ..+..+.+ ++++. .++..+. |+.+.+|+... ......+..|...+..+ .+
T Consensus 86 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 165 (466)
T COG2319 86 DGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP 165 (466)
T ss_pred CCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECC
Confidence 444566661 345555644 37777777 78777 5555444 99999999998 77888888888877755 48
Q ss_pred CCCEEEEEeC-CCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCC-EEEEEecCCeEEEEECCCCc
Q 009993 193 DKKLLVAGGT-DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLT-RIYSGSWDMTVRVWDRALLK 268 (520)
Q Consensus 193 ~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~-~l~s~s~dg~v~iwd~~~~~ 268 (520)
++..+++++. |+.+++|++.++ .....+.+|...|.++++ ++. .+++++.|+.|++||...+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~ 232 (466)
T COG2319 166 DGKLLASGSSLDGTIKLWDLRTG-------------KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK 232 (466)
T ss_pred CCCEEEecCCCCCceEEEEcCCC-------------ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc
Confidence 8888888886 999999998763 245566679999999999 444 45555999999999998887
Q ss_pred EEE-Eee-eccC-EEEEeeCCCEEEEEc-CCeEEEEECCCCee-eEEeecccccceEEEEecCCCCEEEEEeCCCeEEEE
Q 009993 269 CLK-VLR-HSDW-VYGLAPHDTTVASTS-GSDVYIWDTNSGCL-LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY 343 (520)
Q Consensus 269 ~~~-~~~-~~~~-v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~-~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iw 343 (520)
... .+. |... +..+.+++..+++++ ++.+++||...... ...+ .+|...+.++.|+|++..+++++.|+.+.+|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~ 311 (466)
T COG2319 233 LLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLW 311 (466)
T ss_pred EEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecCCccEEEEEECCCCCEEEEeeCCCcEEEE
Confidence 777 454 5444 445668887888777 99999999987765 4444 4688999999999988888889999999999
Q ss_pred EcccCccccceeeeeee--cCCcCCEEEEEecC--CEEEEE-eCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCccc
Q 009993 344 EIINDCTEANVLLVATW--IPHTGPVNSLAFEF--PWLVSA-AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRM 418 (520)
Q Consensus 344 d~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~--~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (520)
|..... ..... ..|...+..+.+.+ ..++.+ ..|+.+.+|+..... ....
T Consensus 312 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-------------------~~~~ 366 (466)
T COG2319 312 DLETGK------LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-------------------PLKT 366 (466)
T ss_pred EcCCCc------eEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-------------------eeEE
Confidence 888773 33333 37777899999832 355555 688999999998742 0111
Q ss_pred ccCcc-eeeEEEEecCCEEE-EecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccc
Q 009993 419 LHGFE-CNLLSVDIGADRIV-CGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQ 490 (520)
Q Consensus 419 ~~~~~-~~v~~~~~~~~~l~-sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~ 490 (520)
..... .....+.+. ..++ .+..++.+.+|+.............. .......+++++..+++
T Consensus 367 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 429 (466)
T COG2319 367 LEGHSNVLSVSFSPD-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT----------SRVTSLDFSPDGKSLAS 429 (466)
T ss_pred ecCCceEEEEEECCC-CCEEEEecCCCceEEEecccCeeeeeccCCC----------CcEEEEEECCCCcEEEE
Confidence 11111 222233332 3333 47899999999999776544332221 34567778888877766
No 181
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=3.2e-16 Score=134.48 Aligned_cols=231 Identities=17% Similarity=0.273 Sum_probs=171.0
Q ss_pred ccccccEEEEEEccCC-----CEEEEEeCCCeEEEEECCCCcEE----EE-----eCCCCceEEEEe---cCCCEEEEEe
Q 009993 139 YGHTEAVLTVFVLASA-----KLLFTSGYDSIVRMWHLEDGFSI----AS-----SKPLGCTIRAVA---ADKKLLVAGG 201 (520)
Q Consensus 139 ~~h~~~V~~l~~~~~~-----~~l~sgs~dg~v~vwd~~~~~~~----~~-----~~~~~~~v~~~~---~~~~~l~sg~ 201 (520)
..|.-+++.+.|.|+. .+|||.+ ..+|+|.+...+.. .. -..+..++++|. .+.+++.+.+
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 5788899999999976 3566554 45999998742111 11 123456777776 5788999999
Q ss_pred CCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-c--CCEEEEEecCCeEEEEECCCCcEEEEee----
Q 009993 202 TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-D--LTRIYSGSWDMTVRVWDRALLKCLKVLR---- 274 (520)
Q Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~--~~~l~s~s~dg~v~iwd~~~~~~~~~~~---- 274 (520)
.|-+..|||++++.. ......+..|...|..++| . -+.+++.+.||.||+||++..+-...+-
T Consensus 171 iDTTCTiWdie~~~~----------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~ 240 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVS----------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS 240 (364)
T ss_pred ccCeEEEEEEeeccc----------cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC
Confidence 999999999988621 1234567789999999999 3 3779999999999999999876544443
Q ss_pred eccCEEEEe---eCCCEEEEEc--CCeEEEEECCCC-eeeEEeecccccceEEEEecCC-CCEEEEEeCCCeEEEEEccc
Q 009993 275 HSDWVYGLA---PHDTTVASTS--GSDVYIWDTNSG-CLLTVVNGAHVGNTKSLARSHT-GDFLFTGGEDGAIHMYEIIN 347 (520)
Q Consensus 275 ~~~~v~~~~---~~~~~l~~~~--d~~i~iwd~~~~-~~~~~~~~~~~~~i~~l~~s~~-~~~l~tg~~dg~i~iwd~~~ 347 (520)
...+...++ .+.+++++-. ...|.|.|++.. .++..+. +|.+.|+.++|.|. ...|+++++|..+.+||+..
T Consensus 241 ~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~-~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 241 PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLR-NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhh-cCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 244556666 5677887766 477999999976 4566665 79999999999995 46899999999999999987
Q ss_pred CccccceeeeeeecCCcCCEEEEEec---CCEEEEEeCC
Q 009993 348 DCTEANVLLVATWIPHTGPVNSLAFE---FPWLVSAAGD 383 (520)
Q Consensus 348 ~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~d 383 (520)
........++..+. ..+.|+.+.|+ |++++.+...
T Consensus 320 ~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 320 MPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred ccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence 64322223343343 56789999996 4788887654
No 182
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=6.5e-16 Score=144.97 Aligned_cols=277 Identities=14% Similarity=0.158 Sum_probs=195.6
Q ss_pred EEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC---CEEEE
Q 009993 178 ASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL---TRIYS 252 (520)
Q Consensus 178 ~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s 252 (520)
..+.+|.+.|.+++ +.|..|++|+.||+|+||.+.++.+ +... ...+.|.|++|++ .-+++
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc-------------vr~~-~~d~~I~~vaw~P~~~~~vLA 459 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC-------------VRTV-QFDSEIRSVAWNPLSDLCVLA 459 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE-------------EEEE-eecceeEEEEecCCCCceeEE
Confidence 45689999999988 8999999999999999999999842 2222 2345788888833 12333
Q ss_pred EecCCeEEEEECCCC--------------------------------------cEEEEeeeccCEEEEe--eCCCEEEEE
Q 009993 253 GSWDMTVRVWDRALL--------------------------------------KCLKVLRHSDWVYGLA--PHDTTVAST 292 (520)
Q Consensus 253 ~s~dg~v~iwd~~~~--------------------------------------~~~~~~~~~~~v~~~~--~~~~~l~~~ 292 (520)
++.+..+.+-+..-| ..-.++.|...|..+. ..|.+|++.
T Consensus 460 vA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV 539 (733)
T KOG0650|consen 460 VAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATV 539 (733)
T ss_pred EEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEe
Confidence 333333444432111 0112344777777777 568899887
Q ss_pred c-C---CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEE
Q 009993 293 S-G---SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN 368 (520)
Q Consensus 293 ~-d---~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~ 368 (520)
. + ..|.|.++........|. ...+.|.++.|+|...+|++++. ..|+|||+... ..+..+......|.
T Consensus 540 ~~~~~~~~VliHQLSK~~sQ~PF~-kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kq------elvKkL~tg~kwiS 611 (733)
T KOG0650|consen 540 MPDSGNKSVLIHQLSKRKSQSPFR-KSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQ------ELVKKLLTGSKWIS 611 (733)
T ss_pred ccCCCcceEEEEecccccccCchh-hcCCceeEEEecCCCceEEEEec-cceEEEehhHH------HHHHHHhcCCeeee
Confidence 6 3 569999998876665554 35678999999999999888864 56999999887 66777777778899
Q ss_pred EEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EEEEecCCCe
Q 009993 369 SLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGI 444 (520)
Q Consensus 369 ~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~ 444 (520)
.++.+| +.|+.|+.|+.+..+|+.-. ..+.+.+..|...+.++++++. ++++|+.||+
T Consensus 612 ~msihp~GDnli~gs~d~k~~WfDldls------------------skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgt 673 (733)
T KOG0650|consen 612 SMSIHPNGDNLILGSYDKKMCWFDLDLS------------------SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT 673 (733)
T ss_pred eeeecCCCCeEEEecCCCeeEEEEcccC------------------cchhHHhhhhhhhhhhhhhccccceeeeecCCCc
Confidence 999977 89999999999999999864 4455667788889999999988 8999999999
Q ss_pred EEEEeCCchHhHH--HHhhhhccccc-chhhhhccceeeeccCCCcccccccc
Q 009993 445 VRIWNFSQAFEIE--RRARALRGIRL-ENRMRRRKLQTEMSSKGGRTDQCSVA 494 (520)
Q Consensus 445 v~iwd~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~s~~g~~~~~~s~~ 494 (520)
+.|+--.--..+- .+..+++..+- +....-.+..+.|+|...++.++..+
T Consensus 674 v~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd 726 (733)
T KOG0650|consen 674 VIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGAD 726 (733)
T ss_pred EEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCC
Confidence 9998543221111 11111111111 11112236788899999999887654
No 183
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.71 E-value=3.3e-16 Score=139.81 Aligned_cols=198 Identities=20% Similarity=0.270 Sum_probs=145.5
Q ss_pred EeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCcE-------EEEee-eccCEEEEeeC---CCEEEEEc-CCe
Q 009993 232 RLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKC-------LKVLR-HSDWVYGLAPH---DTTVASTS-GSD 296 (520)
Q Consensus 232 ~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~~-------~~~~~-~~~~v~~~~~~---~~~l~~~~-d~~ 296 (520)
.+.||+++|..++| +...|++||.|.+|.||.+..+.. +..+. |...|.-+..+ .+.|++++ |.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 45689999999999 668899999999999999865432 33333 77778777732 34555555 999
Q ss_pred EEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcC--CEEEEEe-c
Q 009993 297 VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG--PVNSLAF-E 373 (520)
Q Consensus 297 i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~--~v~~l~~-~ 373 (520)
|.+||+.+|+.+..+. |...|+++.|+.+|.++++.+.|..|+|||.+++ ..+..-.+|.+ +...+-. +
T Consensus 156 v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~------~~v~e~~~heG~k~~Raifl~~ 227 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG------TVVSEGVAHEGAKPARAIFLAS 227 (472)
T ss_pred EEEEeccCCceeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCC------cEeeecccccCCCcceeEEecc
Confidence 9999999999988875 9999999999999999999999999999999999 66776677765 3344433 4
Q ss_pred CCEEEEEe---CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC---EEEEecCCCeEEE
Q 009993 374 FPWLVSAA---GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD---RIVCGGEEGIVRI 447 (520)
Q Consensus 374 ~~~l~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~sg~~Dg~v~i 447 (520)
+..+.||. .+..+-+||..+...... ...+. .+..|+---+|++ ..++|-.|+.||-
T Consensus 228 g~i~tTGfsr~seRq~aLwdp~nl~eP~~----------------~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRY 290 (472)
T KOG0303|consen 228 GKIFTTGFSRMSERQIALWDPNNLEEPIA----------------LQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRY 290 (472)
T ss_pred CceeeeccccccccceeccCcccccCcce----------------eEEec-cCCceEEeeecCCCCEEEEEecCCcceEE
Confidence 45444443 378899999887532211 01111 1223333334444 5667778999999
Q ss_pred EeCCchH
Q 009993 448 WNFSQAF 454 (520)
Q Consensus 448 wd~~~~~ 454 (520)
|++.+..
T Consensus 291 yEit~d~ 297 (472)
T KOG0303|consen 291 FEITNEP 297 (472)
T ss_pred EEecCCC
Confidence 9998765
No 184
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.71 E-value=2e-15 Score=147.87 Aligned_cols=248 Identities=16% Similarity=0.167 Sum_probs=174.5
Q ss_pred ccccEEEEEEcc-CCCEEEEEeCCCeEEEEECCCCcE--EEE----eCCCCceEEEEe----cCCCEEEEEeCCCcEEEE
Q 009993 141 HTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLEDGFS--IAS----SKPLGCTIRAVA----ADKKLLVAGGTDGFIHCW 209 (520)
Q Consensus 141 h~~~V~~l~~~~-~~~~l~sgs~dg~v~vwd~~~~~~--~~~----~~~~~~~v~~~~----~~~~~l~sg~~dg~i~vw 209 (520)
-...|+|+.|+| +..+++.|..+|.|.+||+..+.. ... ...|..+++++. +.+.-+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 457899999999 567888899999999999987755 222 235777777765 334679999999999999
Q ss_pred EcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCC---Cc-----EEEEee-ecc
Q 009993 210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRAL---LK-----CLKVLR-HSD 277 (520)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~---~~-----~~~~~~-~~~ 277 (520)
+++.-............. ....-......++++.| ++..++.|+.+|.|.--+... .. .+..+. |.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~-~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKK-HKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhccccccc-ccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 875432211110000000 00001123456788888 778999999999988743322 22 111222 889
Q ss_pred CEEEEe---eCCCEEEEEcCCeEEEEECC-CCeeeEEeecccccceEEEEecCCC-CEEEEEeCCCeEEEEEcccCcccc
Q 009993 278 WVYGLA---PHDTTVASTSGSDVYIWDTN-SGCLLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEA 352 (520)
Q Consensus 278 ~v~~~~---~~~~~l~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~tg~~dg~i~iwd~~~~~~~~ 352 (520)
+|+++. .....+.+++|.+++||... ...++..+. .+...+++++|||.. ..++++..||.|.+||+.....
T Consensus 400 ~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~-~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~-- 476 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD-SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE-- 476 (555)
T ss_pred ceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh-hccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc--
Confidence 999998 44566677779999999988 566666665 367779999999965 4677888899999999987643
Q ss_pred ceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993 353 NVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 353 ~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~ 394 (520)
.++.+...+....+.+.|++ ..|++|...|++.+|++...
T Consensus 477 --~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 477 --EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred --CCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 44555555556667777754 68999999999999999754
No 185
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=4e-16 Score=136.93 Aligned_cols=248 Identities=17% Similarity=0.207 Sum_probs=173.1
Q ss_pred HhhhhhccccccEEEEEEcc--CCCEEEEEeCCCeEEEEECCCCcEEEEe--CCCC-ceEEEEec--CCCEEEEEeC---
Q 009993 133 ELIDVLYGHTEAVLTVFVLA--SAKLLFTSGYDSIVRMWHLEDGFSIASS--KPLG-CTIRAVAA--DKKLLVAGGT--- 202 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~~--~~~~l~sgs~dg~v~vwd~~~~~~~~~~--~~~~-~~v~~~~~--~~~~l~sg~~--- 202 (520)
+.+..+++|...+..+.|.. ....+.+|+.||+|++||+.+......+ ..+. .+-.++.. +++.+++|..
T Consensus 61 ~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~ 140 (376)
T KOG1188|consen 61 QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTR 140 (376)
T ss_pred hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecccccc
Confidence 47888999999999999987 4678999999999999999887655444 3443 45556663 6777887754
Q ss_pred -CCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCC----cEEEEee
Q 009993 203 -DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALL----KCLKVLR 274 (520)
Q Consensus 203 -dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~----~~~~~~~ 274 (520)
+-.|.+||++..... ...-...|...|+++.| +++.|++||.||.|.+||+... ..+.++.
T Consensus 141 s~A~v~lwDvR~~qq~-----------l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN 209 (376)
T KOG1188|consen 141 SDASVVLWDVRSEQQL-----------LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN 209 (376)
T ss_pred CceEEEEEEeccccch-----------hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc
Confidence 577999999765321 12234579999999999 7799999999999999998754 2455666
Q ss_pred eccCEEEEee--CC-CEEEEEc-CCeEEEEECCCCeeeEEeecccc-----------cceEEEEecC-CCCEEEEEeC-C
Q 009993 275 HSDWVYGLAP--HD-TTVASTS-GSDVYIWDTNSGCLLTVVNGAHV-----------GNTKSLARSH-TGDFLFTGGE-D 337 (520)
Q Consensus 275 ~~~~v~~~~~--~~-~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~-----------~~i~~l~~s~-~~~~l~tg~~-d 337 (520)
+...|.++.. .+ +.+.+-+ ..+..+|+++.+.....+..+.. ..+... .+| ++..++.++. -
T Consensus 210 ~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~ 288 (376)
T KOG1188|consen 210 HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDS 288 (376)
T ss_pred ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEEecccc
Confidence 7777887772 22 2355555 89999999998876555442110 011111 223 4455555544 5
Q ss_pred CeEEEEEcccCccccceeeeeeecC-CcCCEEEEEec--CCEEEEEeCCCcEEEEeCC
Q 009993 338 GAIHMYEIINDCTEANVLLVATWIP-HTGPVNSLAFE--FPWLVSAAGDGKLSLIDVR 392 (520)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~ 392 (520)
|+..++-+...........+..+.+ |...|+++.|+ ...+.||+.||.+.+|...
T Consensus 289 n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 289 NKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred CceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 6666665553222222244555555 77788999885 5799999999999999964
No 186
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.71 E-value=7.6e-16 Score=142.66 Aligned_cols=257 Identities=16% Similarity=0.134 Sum_probs=180.8
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc-EEEEeCCCC-ceEE---EEe----cCCCEEEEEeCCCcEEEEE
Q 009993 140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF-SIASSKPLG-CTIR---AVA----ADKKLLVAGGTDGFIHCWR 210 (520)
Q Consensus 140 ~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~-~~~~~~~~~-~~v~---~~~----~~~~~l~sg~~dg~i~vwd 210 (520)
.|...|.|+.|+.+...+.+++.+..+.-||+.+.. .+..++..- .+.. ..+ .....++.++.||.+.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 577888899999877766666555544445554332 111111110 0111 111 2345788899999998876
Q ss_pred cccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEe-eeccCEEEEe--eC
Q 009993 211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA--PH 285 (520)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~--~~ 285 (520)
-. .........|.+.|.+-.| +|.-|++++.||.|++|.- +|-...++ +...+|.|+. |+
T Consensus 92 k~--------------~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~ 156 (737)
T KOG1524|consen 92 KS--------------ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPN 156 (737)
T ss_pred cc--------------chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCC
Confidence 32 2244456789999999999 7888999999999999985 44333333 3677889988 88
Q ss_pred CCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcC
Q 009993 286 DTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG 365 (520)
Q Consensus 286 ~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 365 (520)
.+.++-+..+.+.|=-+.....+.... +|.+-|.++.|++..+++++|++|-..++||-... .+..-..|..
T Consensus 157 S~~vl~c~g~h~~IKpL~~n~k~i~Wk-AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~-------~Lf~S~~~ey 228 (737)
T KOG1524|consen 157 SNSIVFCQGGHISIKPLAANSKIIRWR-AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA-------NLFTSAAEEY 228 (737)
T ss_pred CCceEEecCCeEEEeecccccceeEEe-ccCcEEEEeecCccccceeecCCceeEEeecccCc-------ccccCChhcc
Confidence 888888888888887777776666666 69999999999999999999999999999997654 5666678999
Q ss_pred CEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeE
Q 009993 366 PVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIV 445 (520)
Q Consensus 366 ~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v 445 (520)
+|++++|+|+.++..+.-+++++=..+. .+.-..++++||..+++|...|.+
T Consensus 229 ~ITSva~npd~~~~v~S~nt~R~~~p~~----------------------------GSifnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 229 AITSVAFNPEKDYLLWSYNTARFSSPRV----------------------------GSIFNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred ceeeeeeccccceeeeeeeeeeecCCCc----------------------------cceEEEEEcCCCceeeccccCceE
Confidence 9999999997555444444555221111 122334555667799999998887
Q ss_pred EE
Q 009993 446 RI 447 (520)
Q Consensus 446 ~i 447 (520)
.+
T Consensus 281 ~~ 282 (737)
T KOG1524|consen 281 IV 282 (737)
T ss_pred EE
Confidence 65
No 187
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=2.8e-15 Score=149.39 Aligned_cols=274 Identities=15% Similarity=0.146 Sum_probs=183.8
Q ss_pred eEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEec---cCCCCeEEEEE----cCCEEEEEecCCe
Q 009993 186 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW---EHEGPITSLAL----DLTRIYSGSWDMT 258 (520)
Q Consensus 186 ~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~----~~~~l~s~s~dg~ 258 (520)
.+..+++-...++++...-.|.|||.+.+.. ...+. .....|+.+.+ |...+++|+.||.
T Consensus 1068 k~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~-------------l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGv 1134 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAADDRERIRVWDWEKGRL-------------LNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGV 1134 (1387)
T ss_pred ceeeecCCCceeEEcCCcceEEEEecccCce-------------eccccCCCCCCCccceeeeecccchhheeeeccCce
Confidence 3445566677888888788999999987642 11111 23467889988 4478999999999
Q ss_pred EEEEECC-C----CcEEEEee----------eccCEEEEe-eCCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEE
Q 009993 259 VRVWDRA-L----LKCLKVLR----------HSDWVYGLA-PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSL 322 (520)
Q Consensus 259 v~iwd~~-~----~~~~~~~~----------~~~~v~~~~-~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l 322 (520)
|+||+-. + .+.+.-.. ..+-|.... ..|.++++|.-..|+|||......+..+..+....++++
T Consensus 1135 IRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaL 1214 (1387)
T KOG1517|consen 1135 IRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTAL 1214 (1387)
T ss_pred EEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceee
Confidence 9999743 2 22222221 122333333 345555555568899999999999988887667778877
Q ss_pred EecC-CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCC--EEEEEecC---CEEEEEeCCCcEEEEeCCcccc
Q 009993 323 ARSH-TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP--VNSLAFEF---PWLVSAAGDGKLSLIDVRKLLR 396 (520)
Q Consensus 323 ~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~ 396 (520)
.-+. .|+.+++|..||.|++||.+..... ..+...+.|... |..+.+.+ ..|++|+.||.|++||++....
T Consensus 1215 S~~~~~gn~i~AGfaDGsvRvyD~R~a~~d---s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~ 1291 (1387)
T KOG1517|consen 1215 SADLVHGNIIAAGFADGSVRVYDRRMAPPD---SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK 1291 (1387)
T ss_pred cccccCCceEEEeecCCceEEeecccCCcc---ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc
Confidence 6543 5799999999999999999887432 457778888887 99999965 4799999999999999997311
Q ss_pred cCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhcc
Q 009993 397 SGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRK 476 (520)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (520)
.... .+. ...-.|.....+.++.+...+|+|+. +.|+||++..........+ ........-..
T Consensus 1292 e~~~----------~iv--~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n----~~F~~q~~gs~ 1354 (1387)
T KOG1517|consen 1292 ETFL----------TIV--AHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYN----PGFMGQRIGSV 1354 (1387)
T ss_pred cccc----------eee--eccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccC----cccccCcCCCc
Confidence 1000 000 00001222445566666679999998 9999999875543222111 11112222334
Q ss_pred ceeeeccCCCcccccc
Q 009993 477 LQTEMSSKGGRTDQCS 492 (520)
Q Consensus 477 ~~~~~s~~g~~~~~~s 492 (520)
..++|+|---.+|+.+
T Consensus 1355 scL~FHP~~~llAaG~ 1370 (1387)
T KOG1517|consen 1355 SCLAFHPHRLLLAAGS 1370 (1387)
T ss_pred ceeeecchhHhhhhcc
Confidence 7889999888888775
No 188
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.70 E-value=2.6e-15 Score=151.88 Aligned_cols=275 Identities=14% Similarity=0.205 Sum_probs=181.4
Q ss_pred EECCCCcEEEEeCCCCceEEEEe---cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE
Q 009993 169 WHLEDGFSIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL 245 (520)
Q Consensus 169 wd~~~~~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 245 (520)
|+. .|..+..+..|...+..+. +++.++++||.||+|++||...-... ........++..-.+.+.++.+
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~------~~s~rS~ltys~~~sr~~~vt~ 1106 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE------GGSARSELTYSPEGSRVEKVTM 1106 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC------cceeeeeEEEeccCCceEEEEe
Confidence 553 4788888888888776654 56689999999999999998654211 0112233344435667777776
Q ss_pred --cCCEEEEEecCCeEEEEECCCCc-------EEEEee--eccCEEEEe----eCCC-EEEEEc-CCeEEEEECCCCeee
Q 009993 246 --DLTRIYSGSWDMTVRVWDRALLK-------CLKVLR--HSDWVYGLA----PHDT-TVASTS-GSDVYIWDTNSGCLL 308 (520)
Q Consensus 246 --~~~~l~s~s~dg~v~iwd~~~~~-------~~~~~~--~~~~v~~~~----~~~~-~l~~~~-d~~i~iwd~~~~~~~ 308 (520)
.++.++.++.||.|++.++.... +..... ..+.+.++. .... .++.+. -+.|..||++.....
T Consensus 1107 ~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~ 1186 (1431)
T KOG1240|consen 1107 CGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA 1186 (1431)
T ss_pred ccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH
Confidence 78999999999999999987521 111111 445566654 2233 555555 699999999987666
Q ss_pred EEeec-ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec-CCcCCEEEEEecC-----CEEEEEe
Q 009993 309 TVVNG-AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI-PHTGPVNSLAFEF-----PWLVSAA 381 (520)
Q Consensus 309 ~~~~~-~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~-----~~l~s~s 381 (520)
..+.. ...+.|++++.+|.+.+++.|+..|.+.+||++-+ .++..+. ++..+++.+..++ ...++++
T Consensus 1187 w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~------~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~ 1260 (1431)
T KOG1240|consen 1187 WRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR------VPILSWEHPARAPIRHVWLCPTYPQESVSVSAG 1260 (1431)
T ss_pred HhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecC------ceeecccCcccCCcceEEeeccCCCCceEEEec
Confidence 55542 24578999999999999999999999999999988 4554442 4557888887754 3444444
Q ss_pred --CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccc-cCcceeeEEEEecCC-EEEEecCCCeEEEEeCCchHhH
Q 009993 382 --GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML-HGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEI 456 (520)
Q Consensus 382 --~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~~ 456 (520)
..+.|.+|++.++........+.....+....+..... .+....+.+.-.+++ .+.+|+.|+.||.||.......
T Consensus 1261 ~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1261 SSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 57889999999875544333221111111111110000 111122333333444 9999999999999999876543
No 189
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.70 E-value=9e-16 Score=131.76 Aligned_cols=231 Identities=18% Similarity=0.248 Sum_probs=164.3
Q ss_pred ccCCCCeEEEEEcC-------CEEEEEecCCeEEEEECCCC--cE--EEEe------eeccCEEEEe---eCCCEEEEEc
Q 009993 234 WEHEGPITSLALDL-------TRIYSGSWDMTVRVWDRALL--KC--LKVL------RHSDWVYGLA---PHDTTVASTS 293 (520)
Q Consensus 234 ~~h~~~v~~l~~~~-------~~l~s~s~dg~v~iwd~~~~--~~--~~~~------~~~~~v~~~~---~~~~~l~~~~ 293 (520)
..|.-+++.+.|.+ +.|++.+ ..+|+|.+... +. ...+ .+..+++++. .+.+++.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 46888999999922 3455544 47999998632 11 1111 1667888887 5788999999
Q ss_pred -CCeEEEEECCCCee--eEEeecccccceEEEEecCCC-CEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEE
Q 009993 294 -GSDVYIWDTNSGCL--LTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNS 369 (520)
Q Consensus 294 -d~~i~iwd~~~~~~--~~~~~~~~~~~i~~l~~s~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~ 369 (520)
|.+..|||++++.. +++-..+|...|..++|...+ +.+++.+.||.+|+||++..... ..+..-.....+...
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS---TIIYE~p~~~~pLlR 247 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS---TIIYEDPSPSTPLLR 247 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc---eEEecCCCCCCccee
Confidence 99999999999743 343334799999999999855 57889999999999999987431 223222222567888
Q ss_pred EEec---CCEEEEEeCC-CcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC---EEEEecCC
Q 009993 370 LAFE---FPWLVSAAGD-GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD---RIVCGGEE 442 (520)
Q Consensus 370 l~~~---~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~sg~~D 442 (520)
++|+ |+++++-..| ..|.|.|++.+ ..+...+.+|...|.++.|.+. .|.|+|+|
T Consensus 248 LswnkqDpnymATf~~dS~~V~iLDiR~P------------------~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD 309 (364)
T KOG0290|consen 248 LSWNKQDPNYMATFAMDSNKVVILDIRVP------------------CTPVARLRNHQASVNGIAWAPHSSSHICTAGDD 309 (364)
T ss_pred eccCcCCchHHhhhhcCCceEEEEEecCC------------------CcceehhhcCcccccceEecCCCCceeeecCCc
Confidence 9994 5788888776 46999999975 5566678899999998888664 99999999
Q ss_pred CeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeec-cCCCcccccc
Q 009993 443 GIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMS-SKGGRTDQCS 492 (520)
Q Consensus 443 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~g~~~~~~s 492 (520)
..+-+||+.+... ......-+.=....++.++.|+ ..+..++.|.
T Consensus 310 ~qaliWDl~q~~~-----~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 310 CQALIWDLQQMPR-----ENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred ceEEEEecccccc-----cCCCCchhhhhccceeeeeeecccCCCEEEEEe
Confidence 9999999986433 1111111111234557888888 4456666654
No 190
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=1.7e-13 Score=119.53 Aligned_cols=229 Identities=18% Similarity=0.247 Sum_probs=164.0
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCc--eEEEEecCCCEEE-EEeCC------CcEEEEEcccC
Q 009993 144 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC--TIRAVAADKKLLV-AGGTD------GFIHCWRAVEV 214 (520)
Q Consensus 144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~l~-sg~~d------g~i~vwd~~~~ 214 (520)
....++|+.|..-++.|..+| .+||+.+.-+...+.+.+.. .+..+-...++++ +|+.+ ..|.|||=..
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k- 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK- 84 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc-
Confidence 445689999988888888777 89999876443332222222 2222223444443 44433 4699999221
Q ss_pred cceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECC-CCcEEEEee---eccCEEEEeeC--CCE
Q 009993 215 LPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRA-LLKCLKVLR---HSDWVYGLAPH--DTT 288 (520)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~-~~~~~~~~~---~~~~v~~~~~~--~~~ 288 (520)
..++.. .....+|.++.+..+.+++.-. +.|++|.+. +.+.++.+. .+..+.++.+. ..+
T Consensus 85 ------------~~~i~e-l~f~~~I~~V~l~r~riVvvl~-~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 85 ------------ERCIIE-LSFNSEIKAVKLRRDRIVVVLE-NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ------------CcEEEE-EEeccceeeEEEcCCeEEEEec-CeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 122322 3467899999999998888775 689999987 556666665 45567777744 334
Q ss_pred EEEEc--CCeEEEEECCCCee--eEEeecccccceEEEEecCCCCEEEEEeCCCe-EEEEEcccCccccceeeeeeecC-
Q 009993 289 VASTS--GSDVYIWDTNSGCL--LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA-IHMYEIINDCTEANVLLVATWIP- 362 (520)
Q Consensus 289 l~~~~--d~~i~iwd~~~~~~--~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~-i~iwd~~~~~~~~~~~~~~~~~~- 362 (520)
|+.-+ -|.|.|-|+...+. ...+. +|.+.|.|++.+-+|..+||+|..|+ |||||..++ ..+..+..
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~-AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g------~~l~E~RRG 223 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIIN-AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG------TLLQELRRG 223 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEE-cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC------cEeeeeecC
Confidence 44433 48999999987655 34454 79999999999999999999999998 899999999 55555543
Q ss_pred -CcCCEEEEEecC--CEEEEEeCCCcEEEEeCCccc
Q 009993 363 -HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLL 395 (520)
Q Consensus 363 -h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~ 395 (520)
....|++++|+| .+|+++|+.|+|.|+.++...
T Consensus 224 ~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 224 VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 345799999987 599999999999999998643
No 191
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.69 E-value=5.9e-15 Score=129.78 Aligned_cols=247 Identities=17% Similarity=0.221 Sum_probs=183.1
Q ss_pred HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEEC-CCCcE---EEEeCCCCceEEEEecCCCEEEEEeCCCcEEE
Q 009993 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHL-EDGFS---IASSKPLGCTIRAVAADKKLLVAGGTDGFIHC 208 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~-~~~~~---~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~v 208 (520)
.+++.++||.+.|+....-|..+-+++.+.|.++|||-- +.++. +..+.+....+....++...|+.|-..|++.-
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence 457888999999999999998888999999999999953 34433 33334455566666688899999999999988
Q ss_pred EEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEeeCC
Q 009993 209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHD 286 (520)
Q Consensus 209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~ 286 (520)
+.+.... +..........|...|..+-| ....+++.+.|..+.---.+.+..+..+.....-.++..+-
T Consensus 95 fs~sedf---------nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~ 165 (404)
T KOG1409|consen 95 FALSEDF---------NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDA 165 (404)
T ss_pred EEhhhhh---------hhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceee
Confidence 8765432 223344556689999999999 56889999999887655556655554443222222222221
Q ss_pred CEEEEEc-CCeEEEEEC--CCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCC
Q 009993 287 TTVASTS-GSDVYIWDT--NSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH 363 (520)
Q Consensus 287 ~~l~~~~-d~~i~iwd~--~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h 363 (520)
.+...|. .|.|.+-.+ ..-.++.++. +|.+.+++++|.|....+++|..|..+.+||+.... .....+.+|
T Consensus 166 ~~~fvGd~~gqvt~lr~~~~~~~~i~~~~-~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~-----g~~~el~gh 239 (404)
T KOG1409|consen 166 LYAFVGDHSGQITMLKLEQNGCQLITTFN-GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK-----GTAYELQGH 239 (404)
T ss_pred EEEEecccccceEEEEEeecCCceEEEEc-CcccceEEEEEcCCCcEEEeccccCceEEEeccCCc-----ceeeeeccc
Confidence 2445555 565555443 3445566665 799999999999999999999999999999997763 456678899
Q ss_pred cCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993 364 TGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 364 ~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~ 394 (520)
...|..+.+-+ ..+++++.||.|.+|+++..
T Consensus 240 ~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 240 NDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 99999998854 79999999999999999753
No 192
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=4.8e-16 Score=145.05 Aligned_cols=224 Identities=20% Similarity=0.284 Sum_probs=159.6
Q ss_pred CCCCCCcccHH------------HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC----------cEEEE
Q 009993 122 GAGFSDDKSWK------------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG----------FSIAS 179 (520)
Q Consensus 122 ~~~~~~~~~W~------------~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~----------~~~~~ 179 (520)
++-+...+.|. +.+.+|++|.++|.|+++.+++..+++|+.||+|+.|++... .....
T Consensus 312 ~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~ 391 (577)
T KOG0642|consen 312 ASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGT 391 (577)
T ss_pred eccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccc
Confidence 34455557887 447889999999999999999999999999999999976522 22345
Q ss_pred eCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCE---EEEEe
Q 009993 180 SKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTR---IYSGS 254 (520)
Q Consensus 180 ~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~s 254 (520)
+.||...++.+. .....|++++.||+++.|+.....++.+ ....-.+.-.++.+.... .++..
T Consensus 392 l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f------------~~~~e~g~Plsvd~~ss~~a~~~~s~ 459 (577)
T KOG0642|consen 392 LLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTF------------GEPKEHGYPLSVDRTSSRPAHSLASF 459 (577)
T ss_pred eeccccceeeeeecccccceeeecCCceEEeeccCCcCcccc------------CCccccCCcceEeeccchhHhhhhhc
Confidence 678998886554 7777899999999999999766532111 111222334556663322 23333
Q ss_pred cCCeEEEEECCCCcEEEEeee--------ccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEE
Q 009993 255 WDMTVRVWDRALLKCLKVLRH--------SDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLA 323 (520)
Q Consensus 255 ~dg~v~iwd~~~~~~~~~~~~--------~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~ 323 (520)
.-+.--+++++....+..+.. ...+.-+. +...+.+++. |+.|+++|..++..+.... .|...+++++
T Consensus 460 ~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~-a~~~svtsla 538 (577)
T KOG0642|consen 460 RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV-AHKDSVTSLA 538 (577)
T ss_pred ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhee-eccceeccee
Confidence 333334445555554444431 12233333 6667777777 8999999999999998887 6999999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCc
Q 009993 324 RSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT 364 (520)
Q Consensus 324 ~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 364 (520)
+.|+|.+|++|+.|+.+++|.+... .++.....|.
T Consensus 539 i~~ng~~l~s~s~d~sv~l~kld~k------~~~~es~~~r 573 (577)
T KOG0642|consen 539 IDPNGPYLMSGSHDGSVRLWKLDVK------TCVLESTAHR 573 (577)
T ss_pred ecCCCceEEeecCCceeehhhccch------heeecccccc
Confidence 9999999999999999999999777 5555555543
No 193
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=4.4e-14 Score=125.57 Aligned_cols=228 Identities=16% Similarity=0.217 Sum_probs=171.6
Q ss_pred EecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCC--eEEEEECCCC
Q 009993 190 VAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDM--TVRVWDRALL 267 (520)
Q Consensus 190 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg--~v~iwd~~~~ 267 (520)
+..+...|..|+.||. ++++...-. ...........|.-+-|+..+++..+.+. .+++.+++.+
T Consensus 13 ~Nqd~~~lsvGs~~Gy-k~~~~~~~~-------------k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 13 FNQDSTLLSVGSKDGY-KIFSCSPFE-------------KCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred eccceeEEEccCCCce-eEEecCchH-------------HhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccC
Confidence 4456667888888874 566653321 11111122345566667777777666554 4999999999
Q ss_pred cEEEEeeeccCEEEEeeCCCEEEEEcCCeEEEEECCCCeeeEEeecc--cccceEEEEecCCCCEEEEE--eCCCeEEEE
Q 009993 268 KCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGA--HVGNTKSLARSHTGDFLFTG--GEDGAIHMY 343 (520)
Q Consensus 268 ~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~i~~l~~s~~~~~l~tg--~~dg~i~iw 343 (520)
..+..+..+..|.++..+.+.++++-...|+|||+++.+.+.++..- +...+.++.+++.+.+++-- ...|.|.+|
T Consensus 79 ~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 79 TTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred ceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 99999999999999999999999988777999999999999888743 45567777777777788853 346899999
Q ss_pred EcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCc-EEEEeCCcccccCCCCCCCceeeeeecCCCccccc
Q 009993 344 EIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGK-LSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH 420 (520)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (520)
|..+- .++..+..|.+++.+++|++ .+|||+|+.|+ |||+.+.++.+......+..
T Consensus 159 d~~nl------~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--------------- 217 (391)
T KOG2110|consen 159 DTINL------QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--------------- 217 (391)
T ss_pred Ecccc------eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce---------------
Confidence 99988 78889999999999999965 79999999998 69999988755544333221
Q ss_pred CcceeeEEEEec--CCEEEEecCCCeEEEEeCCchH
Q 009993 421 GFECNLLSVDIG--ADRIVCGGEEGIVRIWNFSQAF 454 (520)
Q Consensus 421 ~~~~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~~~~ 454 (520)
...+.+++|+ +.+|++.|+.++|++|.++...
T Consensus 218 --~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 218 --PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred --eeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 2345555554 4599999999999999997644
No 194
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.67 E-value=2.4e-15 Score=142.80 Aligned_cols=257 Identities=13% Similarity=0.165 Sum_probs=183.5
Q ss_pred hhhhcCCCCCCCCCCCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCC
Q 009993 108 YCERWGLPIASAPLGAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPL 183 (520)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~ 183 (520)
+-..|. |+++.++........+++ .+.++|+||++.|+|++|+.||+.+++|+.|+.|.+|+-.-...++ ..|
T Consensus 16 ~d~afk-PDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk--YSH 92 (1081)
T KOG1538|consen 16 NDIAFK-PDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK--YSH 92 (1081)
T ss_pred heeEEC-CCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee--ecc
Confidence 344555 666655544444444444 6789999999999999999999999999999999999865332222 257
Q ss_pred CceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeE
Q 009993 184 GCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTV 259 (520)
Q Consensus 184 ~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v 259 (520)
+..|.|++ |-...|++++.+ ..-+|...... +. -......|.+.+| ||.+++.|-.||+|
T Consensus 93 ~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~--------------V~-K~kss~R~~~CsWtnDGqylalG~~nGTI 156 (1081)
T KOG1538|consen 93 NDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS--------------VS-KHKSSSRIICCSWTNDGQYLALGMFNGTI 156 (1081)
T ss_pred CCeeeEeecCchHHHhhhcchh-hccccChhhhh--------------HH-hhhhheeEEEeeecCCCcEEEEeccCceE
Confidence 77777776 778889988864 35578754321 11 1123456777888 88999999999999
Q ss_pred EEEECCCCcEEEEee---eccCEEEEe--eC-----CCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCC
Q 009993 260 RVWDRALLKCLKVLR---HSDWVYGLA--PH-----DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG 328 (520)
Q Consensus 260 ~iwd~~~~~~~~~~~---~~~~v~~~~--~~-----~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~ 328 (520)
.+-+-...+.+..-+ ...+|.++. |. ...+++.. +.++.++.+.. +.+..-. .-.-...|+.+-++|
T Consensus 157 siRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r-~L~FdP~CisYf~NG 234 (1081)
T KOG1538|consen 157 SIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDR-ALNFDPCCISYFTNG 234 (1081)
T ss_pred EeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeecccc-cCCCCchhheeccCC
Confidence 998754433333333 567888887 22 23566666 67777777653 3332111 123345688999999
Q ss_pred CEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCC
Q 009993 329 DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR 392 (520)
Q Consensus 329 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~ 392 (520)
.++..|+.|+.+++|-- .+ ..+.++......|+.++..| ++++.|+.||+|..|++-
T Consensus 235 Ey~LiGGsdk~L~~fTR-~G------vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 235 EYILLGGSDKQLSLFTR-DG------VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred cEEEEccCCCceEEEee-cC------eEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 99999999999999964 44 45666666778999999976 699999999999999875
No 195
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.66 E-value=2.4e-14 Score=124.87 Aligned_cols=227 Identities=14% Similarity=0.103 Sum_probs=173.9
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC---cEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCc
Q 009993 141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG---FSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVL 215 (520)
Q Consensus 141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~ 215 (520)
-..+|+|.+|++|+..+|.+-....|.||..... +...++..|...|+.+. +..+.|++++.|..-++|....+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~- 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG- 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC-
Confidence 4578999999999999999999999999998655 46678888888777665 88999999999999999987433
Q ss_pred ceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEE---e--eeccCEEEEe--eCC
Q 009993 216 PHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKV---L--RHSDWVYGLA--PHD 286 (520)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~---~--~~~~~v~~~~--~~~ 286 (520)
...++...+..++..++++.| ..+.+++||.-..|.||-++...--.. + .+...|++++ +++
T Consensus 88 ---------~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn 158 (361)
T KOG1523|consen 88 ---------GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN 158 (361)
T ss_pred ---------CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc
Confidence 335677778889999999999 668999999999999998775543321 2 2677889998 788
Q ss_pred CEEEEEc-CCeEEEEECC-----C-------------CeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEccc
Q 009993 287 TTVASTS-GSDVYIWDTN-----S-------------GCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIN 347 (520)
Q Consensus 287 ~~l~~~~-d~~i~iwd~~-----~-------------~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~ 347 (520)
-++++|+ |+..++|..- . |+.+.++. ...+.+..+.|+|+|..|+-.+.|+++.+-|...
T Consensus 159 VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 159 VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence 8889999 9999988642 1 22233332 3567899999999999999999999999999877
Q ss_pred CccccceeeeeeecCCcCCEEEEEe-cCCEEEEEeCC
Q 009993 348 DCTEANVLLVATWIPHTGPVNSLAF-EFPWLVSAAGD 383 (520)
Q Consensus 348 ~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~d 383 (520)
+.. .+.......-+..++.| +.+.++.++.|
T Consensus 238 p~~-----~v~~~~~~~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 238 PSE-----RVQSVATAQLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred Cch-----hccchhhccCCceeeEeecCCceeecCCC
Confidence 631 22233233356777777 44555555555
No 196
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.65 E-value=6.2e-15 Score=132.37 Aligned_cols=218 Identities=23% Similarity=0.268 Sum_probs=159.4
Q ss_pred CCCCCCCCCCcccHH-------------HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECC--------C---
Q 009993 118 SAPLGAGFSDDKSWK-------------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLE--------D--- 173 (520)
Q Consensus 118 ~~~~~~~~~~~~~W~-------------~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~--------~--- 173 (520)
.+..+.++.+.++|+ +....|..|..+|+++.|+|+|++|++|+.+|.|.+|... +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 344556678889998 3467899999999999999999999999999999999865 2
Q ss_pred -----CcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc
Q 009993 174 -----GFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD 246 (520)
Q Consensus 174 -----~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 246 (520)
....+.+.+|...++.++ +++.++++|+.|..+++||+..|. ....+.+|...|..++||
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~-------------l~~~~~dh~~yvqgvawD 174 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ-------------LLAILDDHEHYVQGVAWD 174 (434)
T ss_pred hCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce-------------eEeeccccccccceeecc
Confidence 123455677888887665 999999999999999999998874 455666788888888884
Q ss_pred C--CEEEEEecCCeEEEEECCCCcEEE-----------------------------------------------------
Q 009993 247 L--TRIYSGSWDMTVRVWDRALLKCLK----------------------------------------------------- 271 (520)
Q Consensus 247 ~--~~l~s~s~dg~v~iwd~~~~~~~~----------------------------------------------------- 271 (520)
+ .++++-+.|...+.+.+...+.++
T Consensus 175 pl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~ 254 (434)
T KOG1009|consen 175 PLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKV 254 (434)
T ss_pred hhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeee
Confidence 4 556665555544443321110000
Q ss_pred ----------Eee-------------eccCEEEEe--------------------eCCCEEEEEcCCeEEEEECCCCeee
Q 009993 272 ----------VLR-------------HSDWVYGLA--------------------PHDTTVASTSGSDVYIWDTNSGCLL 308 (520)
Q Consensus 272 ----------~~~-------------~~~~v~~~~--------------------~~~~~l~~~~d~~i~iwd~~~~~~~ 308 (520)
.+. ...++..+. |..-.++.++.+.|++||.++..++
T Consensus 255 g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~ 334 (434)
T KOG1009|consen 255 GGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPL 334 (434)
T ss_pred CCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccce
Confidence 000 000000000 1233466677888999999998888
Q ss_pred EEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993 309 TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND 348 (520)
Q Consensus 309 ~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~ 348 (520)
....+-|-..++.++|+++|..++..+.||...+-.+...
T Consensus 335 ~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 335 AVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred EEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 8888789999999999999999999999999888777666
No 197
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.1e-13 Score=136.06 Aligned_cols=291 Identities=13% Similarity=0.128 Sum_probs=196.3
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEECCC--C--cEEEEeCCCCce--EEEEecCCCEEEEEeCCCcEEEEEcc
Q 009993 139 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED--G--FSIASSKPLGCT--IRAVAADKKLLVAGGTDGFIHCWRAV 212 (520)
Q Consensus 139 ~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~--~--~~~~~~~~~~~~--v~~~~~~~~~l~sg~~dg~i~vwd~~ 212 (520)
..|+-.++|.+++|+++++|+|..||.|.+|.--. + .....+.=|... +.+++++|.+|++|+..|.+.+|.+.
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 35666799999999999999999999999996432 1 122334445444 45566999999999999999999998
Q ss_pred cCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeec------------c-
Q 009993 213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHS------------D- 277 (520)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~------------~- 277 (520)
++. ..-++.-.++|..+.+ |+++......|..|.+....+.....++.+- +
T Consensus 282 T~~--------------kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l 347 (792)
T KOG1963|consen 282 TGK--------------KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSL 347 (792)
T ss_pred CCC--------------cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccccc
Confidence 874 2234456788999999 7788888888999999988766555554411 1
Q ss_pred -CEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeec----------ccccceEEEEecCCCCEEEEEe--------CC
Q 009993 278 -WVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNG----------AHVGNTKSLARSHTGDFLFTGG--------ED 337 (520)
Q Consensus 278 -~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~----------~~~~~i~~l~~s~~~~~l~tg~--------~d 337 (520)
...++.|..+.++-.+ .|.|.+||+-+...+..+.. .+.-.+++++.+-.|.+++|+- .|
T Consensus 348 ~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~ 427 (792)
T KOG1963|consen 348 TTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFD 427 (792)
T ss_pred ceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccC
Confidence 1223446444444444 89999999988877665541 1233577888888899998863 23
Q ss_pred C--eEEEEEcccCccccceeeeeeecCCcCCEEEEEec-C---CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeee
Q 009993 338 G--AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE-F---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE 411 (520)
Q Consensus 338 g--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 411 (520)
| .+++|-.......... ......+|...+....+. + ...++++.||.++||-+............-
T Consensus 428 ~e~~LKFW~~n~~~kt~~L-~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W------- 499 (792)
T KOG1963|consen 428 GEVSLKFWQYNPNSKTFIL-NTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNW------- 499 (792)
T ss_pred ceEEEEEEEEcCCcceeEE-EEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccce-------
Confidence 3 4788987665332211 122345787777766663 2 389999999999999996543332211111
Q ss_pred cCCCcccccCcceeeEEEEecCC-EEEEecCCCeEEEEeCCch
Q 009993 412 VEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQA 453 (520)
Q Consensus 412 ~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~~ 453 (520)
.+..+-.-|..++.+..|+++ .+++.+.|++|.+||..+.
T Consensus 500 --~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 500 --TCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred --EEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCCh
Confidence 111111124445555555554 6777778899999999985
No 198
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.65 E-value=2.7e-15 Score=127.20 Aligned_cols=245 Identities=16% Similarity=0.222 Sum_probs=170.9
Q ss_pred cceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEee--eccCEEEEe--eCCCEEEEEcCCeEEEEEC
Q 009993 228 NTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA--PHDTTVASTSGSDVYIWDT 302 (520)
Q Consensus 228 ~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~--~~~~~l~~~~d~~i~iwd~ 302 (520)
.+.+.+.+|.+.|+++.| ...+|++|..-|.|++|++.+.+....++ +...|+.+. +++.+..-|-|..+.+|++
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTI 84 (323)
T ss_pred CCeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEc
Confidence 356677799999999999 55789999999999999999988877776 677888887 5544444455889999988
Q ss_pred CCCeeeEE--------------ee--------------------------------------cccccceEEEEecC-CCC
Q 009993 303 NSGCLLTV--------------VN--------------------------------------GAHVGNTKSLARSH-TGD 329 (520)
Q Consensus 303 ~~~~~~~~--------------~~--------------------------------------~~~~~~i~~l~~s~-~~~ 329 (520)
..+..+.. +. .+..+.+.+..+.. ++.
T Consensus 85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s 164 (323)
T KOG0322|consen 85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS 164 (323)
T ss_pred cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence 65321110 00 00122344444322 222
Q ss_pred --EEEEEeCCCeEEEEEcccCccc----cceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCC
Q 009993 330 --FLFTGGEDGAIHMYEIINDCTE----ANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPT 401 (520)
Q Consensus 330 --~l~tg~~dg~i~iwd~~~~~~~----~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~ 401 (520)
++++|.++|.+.+||+.++... ...+.......|..+|.++.|++ +.=++|+.+..+..|.+........
T Consensus 165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq-- 242 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQ-- 242 (323)
T ss_pred eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccc--
Confidence 5678999999999999987322 11233444567999999999976 5667888888999999875311110
Q ss_pred CCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeee
Q 009993 402 SGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEM 481 (520)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (520)
-.....+......-..+.+|++.+||+|+||+||||..++...+..+.. ++..+..++|
T Consensus 243 -----------~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky----------Hsagvn~vAf 301 (323)
T KOG0322|consen 243 -----------IRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY----------HSAGVNAVAF 301 (323)
T ss_pred -----------ccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh----------hhcceeEEEe
Confidence 1111122333344556778899999999999999999998877665443 3455789999
Q ss_pred ccCCCccccccccc
Q 009993 482 SSKGGRTDQCSVAA 495 (520)
Q Consensus 482 s~~g~~~~~~s~~~ 495 (520)
+||-..+|+++.++
T Consensus 302 spd~~lmAaaskD~ 315 (323)
T KOG0322|consen 302 SPDCELMAAASKDA 315 (323)
T ss_pred CCCCchhhhccCCc
Confidence 99988888877554
No 199
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.64 E-value=5.6e-13 Score=127.62 Aligned_cols=267 Identities=10% Similarity=0.118 Sum_probs=160.9
Q ss_pred EEEEeCCCeEEEEECCC-Cc--EEEEeCC-CCceEEEEecCCCEEEEEe-CCCcEEEEEccc-CcceeeeccCCccccce
Q 009993 157 LFTSGYDSIVRMWHLED-GF--SIASSKP-LGCTIRAVAADKKLLVAGG-TDGFIHCWRAVE-VLPHLFDISGSEKQNTQ 230 (520)
Q Consensus 157 l~sgs~dg~v~vwd~~~-~~--~~~~~~~-~~~~v~~~~~~~~~l~sg~-~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~ 230 (520)
+++...|+.|++|++.+ ++ .+..+.. .......++|++++|++++ .++.|.+|++.. +.. ...
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-----------~~~ 73 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-----------TFA 73 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-----------EEe
Confidence 34447799999999964 33 4444532 2234457789999887765 478899999862 211 011
Q ss_pred EEeccCCCCeEEEEE--cCCEEEEEec-CCeEEEEECCCC----cEEEEeeeccCEE--EEeeCCCEEEEEc--CCeEEE
Q 009993 231 FRLWEHEGPITSLAL--DLTRIYSGSW-DMTVRVWDRALL----KCLKVLRHSDWVY--GLAPHDTTVASTS--GSDVYI 299 (520)
Q Consensus 231 ~~~~~h~~~v~~l~~--~~~~l~s~s~-dg~v~iwd~~~~----~~~~~~~~~~~v~--~~~~~~~~l~~~~--d~~i~i 299 (520)
... ...+....+++ +++++++++. ++.|.+|++.+. +.+..+.+..... .+.|+++++++++ ++.|.+
T Consensus 74 ~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v 152 (330)
T PRK11028 74 AES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRL 152 (330)
T ss_pred eee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEE
Confidence 111 12234567777 5677777764 889999999642 2223232222222 3558898887666 699999
Q ss_pred EECCCCeeeEE-----eecccccceEEEEecCCCCEEEEEeC-CCeEEEEEcccCccccceeeeeeecC------CcCCE
Q 009993 300 WDTNSGCLLTV-----VNGAHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIINDCTEANVLLVATWIP------HTGPV 367 (520)
Q Consensus 300 wd~~~~~~~~~-----~~~~~~~~i~~l~~s~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~------h~~~v 367 (520)
||+.+...+.. ...........+.|+|+|++++++.+ ++.|.+|++..... ....+..+.. +....
T Consensus 153 ~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~ 230 (330)
T PRK11028 153 FTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG--EIECVQTLDMMPADFSDTRWA 230 (330)
T ss_pred EEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC--CEEEEEEEecCCCcCCCCccc
Confidence 99986432211 11112345678999999999988876 89999999974210 1122222221 11223
Q ss_pred EEEEecC--CEEEEEe-CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEec-CCC
Q 009993 368 NSLAFEF--PWLVSAA-GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGG-EEG 443 (520)
Q Consensus 368 ~~l~~~~--~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~-~Dg 443 (520)
..+.++| ++++++. .++.|.+|++....... .+.. ....+....-..+++++++|++++ .++
T Consensus 231 ~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~---------~~~~-----~~~~~~~p~~~~~~~dg~~l~va~~~~~ 296 (330)
T PRK11028 231 ADIHITPDGRHLYACDRTASLISVFSVSEDGSVL---------SFEG-----HQPTETQPRGFNIDHSGKYLIAAGQKSH 296 (330)
T ss_pred eeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE---------EEeE-----EEeccccCCceEECCCCCEEEEEEccCC
Confidence 4577766 5777775 47899999996531100 0000 000111222356778888777665 489
Q ss_pred eEEEEeCC
Q 009993 444 IVRIWNFS 451 (520)
Q Consensus 444 ~v~iwd~~ 451 (520)
+|.+|+++
T Consensus 297 ~v~v~~~~ 304 (330)
T PRK11028 297 HISVYEID 304 (330)
T ss_pred cEEEEEEc
Confidence 99999885
No 200
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.64 E-value=2.6e-14 Score=132.75 Aligned_cols=214 Identities=15% Similarity=0.163 Sum_probs=149.2
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEE------EEeCCCCceEEEEe-----cCCCEEEEEeCCCcEEEEEcc
Q 009993 144 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI------ASSKPLGCTIRAVA-----ADKKLLVAGGTDGFIHCWRAV 212 (520)
Q Consensus 144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~------~~~~~~~~~v~~~~-----~~~~~l~sg~~dg~i~vwd~~ 212 (520)
.+....++-.|++|+-.- ...+.+|+...+..+ ..+++....+.++. +.+--++.|-.-|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 344444555566665443 234788887643221 22344444455553 667778889888999888854
Q ss_pred cCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCC--------------CcEEEEee-
Q 009993 213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRAL--------------LKCLKVLR- 274 (520)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~--------------~~~~~~~~- 274 (520)
..... ........-.+..|+|+.| +...++.+-.+|.+.+||..- +.......
T Consensus 204 ~~~~s---------klfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ 274 (636)
T KOG2394|consen 204 NFEVS---------KLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTS 274 (636)
T ss_pred hhHHH---------HhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeee
Confidence 32100 0000001112478999999 667788888899999997531 11111111
Q ss_pred --------------eccCEEEE--eeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCC
Q 009993 275 --------------HSDWVYGL--APHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED 337 (520)
Q Consensus 275 --------------~~~~v~~~--~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d 337 (520)
..+.|+.+ ++||++|++.+ ||.++|||..+.+.+..++ ..-+...|++|+|||++|++|++|
T Consensus 275 ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk-SYFGGLLCvcWSPDGKyIvtGGED 353 (636)
T KOG2394|consen 275 KSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK-SYFGGLLCVCWSPDGKYIVTGGED 353 (636)
T ss_pred eccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH-hhccceEEEEEcCCccEEEecCCc
Confidence 12234433 38999999999 9999999999988877766 367789999999999999999999
Q ss_pred CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC
Q 009993 338 GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF 374 (520)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 374 (520)
.-|.||.+... +.+..-.+|..+|..|+|+|
T Consensus 354 DLVtVwSf~er------RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 354 DLVTVWSFEER------RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ceEEEEEeccc------eEEEeccccccceeeEeecc
Confidence 99999999998 78999999999999999998
No 201
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=5.9e-15 Score=137.26 Aligned_cols=214 Identities=17% Similarity=0.178 Sum_probs=155.0
Q ss_pred hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEe-CCCCceEEEEe----cCCCEEEEEeCCCcEEE
Q 009993 134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS-KPLGCTIRAVA----ADKKLLVAGGTDGFIHC 208 (520)
Q Consensus 134 ~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~----~~~~~l~sg~~dg~i~v 208 (520)
+.+.|.||++-|.|+.|+.+|.+|++||.|-.+.|||.-..+.+..+ .+|...|.+.. .++..+++|+.|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 46789999999999999999999999999999999999888777776 48999888876 46778999999999999
Q ss_pred EEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCc-E------EEEee--ec
Q 009993 209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLK-C------LKVLR--HS 276 (520)
Q Consensus 209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~-~------~~~~~--~~ 276 (520)
+|+........+ .........+..|...|.-|+. .++.+.+++.||+++-+|++... | ...+. +.
T Consensus 122 fdl~~~~~~~~d---~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 122 FDLDSSKEGGMD---HGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred Eecccccccccc---cCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence 998753211110 1122344556678999999988 44889999999999999998632 1 11111 11
Q ss_pred c--CEEE--Ee-eCCCEEEEEc-CCeEEEEECCC--------C----------eeeEEeecccc-----------cceEE
Q 009993 277 D--WVYG--LA-PHDTTVASTS-GSDVYIWDTNS--------G----------CLLTVVNGAHV-----------GNTKS 321 (520)
Q Consensus 277 ~--~v~~--~~-~~~~~l~~~~-d~~i~iwd~~~--------~----------~~~~~~~~~~~-----------~~i~~ 321 (520)
. ...+ ++ .+..+|++|+ |-..++||.+. + .++..+..+|. ..++-
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~ 278 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY 278 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence 1 1223 33 4567888888 88899999432 1 12333433343 12566
Q ss_pred EEecCCCCEEEEEeCCCeEEEEEcccCcc
Q 009993 322 LARSHTGDFLFTGGEDGAIHMYEIINDCT 350 (520)
Q Consensus 322 l~~s~~~~~l~tg~~dg~i~iwd~~~~~~ 350 (520)
+.|+|+|.-|++.-..-.|++||+..++.
T Consensus 279 vtfnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 279 VTFNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred EEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 78999998888776777899999977643
No 202
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.1e-14 Score=131.63 Aligned_cols=191 Identities=21% Similarity=0.232 Sum_probs=141.8
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccC
Q 009993 146 LTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISG 223 (520)
Q Consensus 146 ~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~ 223 (520)
.+++|+++|..|++|+.||++|||+..+...+.....|...|.++. ||++.|++-+.| ..+||++.++...... .
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~--t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK--T 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc--C
Confidence 7899999999999999999999999998888888888888887655 999999999999 8999999988321100 0
Q ss_pred CccccceEEeccCCCCeEEEEE--cC---CE-EE-EEecCCeEEEEECCCCcE---E---EEeeeccCEEEEe--eCCCE
Q 009993 224 SEKQNTQFRLWEHEGPITSLAL--DL---TR-IY-SGSWDMTVRVWDRALLKC---L---KVLRHSDWVYGLA--PHDTT 288 (520)
Q Consensus 224 ~~~~~~~~~~~~h~~~v~~l~~--~~---~~-l~-s~s~dg~v~iwd~~~~~~---~---~~~~~~~~v~~~~--~~~~~ 288 (520)
+ ..-......+.| ++ .+ ++ ....-+.|+.||+....- + +.+.....|.+++ .+|++
T Consensus 225 ~---------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf 295 (398)
T KOG0771|consen 225 P---------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF 295 (398)
T ss_pred C---------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE
Confidence 0 111122233334 22 12 22 222334566655543221 1 1111334566665 99999
Q ss_pred EEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993 289 VASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND 348 (520)
Q Consensus 289 l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~ 348 (520)
++.|+ +|.|.|++..+.+.+..++..|...|+.+.|+|+.+++++-+.|..+.+..+.-.
T Consensus 296 ~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 296 LALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred EEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 99999 9999999999999999999899999999999999999999999999998887653
No 203
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.62 E-value=3.7e-16 Score=151.84 Aligned_cols=260 Identities=19% Similarity=0.237 Sum_probs=189.3
Q ss_pred EEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEE
Q 009993 176 SIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIY 251 (520)
Q Consensus 176 ~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~ 251 (520)
.++.+.+|-..|+|.. ..|.++++|+.|..++||..+++ .+.....||.+.|+.++. +..+++
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~-------------~~lAs~rGhs~ditdlavs~~n~~ia 248 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA-------------RCLASCRGHSGDITDLAVSSNNTMIA 248 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccch-------------hhhccCCCCccccchhccchhhhhhh
Confidence 3445678988887765 67899999999999999998775 366788899999999999 556789
Q ss_pred EEecCCeEEEEECCCCcEEEEee-eccCEEEEeeCCCEEEEEcCCeEEEEECCCCeeeEE---eecccccceEEEEecCC
Q 009993 252 SGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTV---VNGAHVGNTKSLARSHT 327 (520)
Q Consensus 252 s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~---~~~~~~~~i~~l~~s~~ 327 (520)
++|.|..|++|.+.++..+..+. |.+.|++++..... .++.||++++||.+-...+.. .......-+.++.|..+
T Consensus 249 aaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~ 327 (1113)
T KOG0644|consen 249 AASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENN 327 (1113)
T ss_pred hcccCceEEEEecCCCchHHHHhccccceeeeccCccc-cCCCCCceEeccccccccccCCCCCCcccccceeeeecccc
Confidence 99999999999999999999887 99999999955544 333389999999982111111 01112345667778888
Q ss_pred CCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEec---CCEEEEEeCCCcEEEEeCCcccccCCCCCCC
Q 009993 328 GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE---FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGK 404 (520)
Q Consensus 328 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 404 (520)
+..++||+.|+.-..|.+.... .+...+.-+.+. ..+.+++-.+..+.+|++.++
T Consensus 328 ~~~f~Tgs~d~ea~n~e~~~l~------------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---------- 385 (1113)
T KOG0644|consen 328 GDRFLTGSRDGEARNHEFEQLA------------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---------- 385 (1113)
T ss_pred ccccccccCCcccccchhhHhh------------hhccceEEEeccccccccceeeeeeeEeeeeecccc----------
Confidence 8999999999999888765431 111111112221 256677778889999999884
Q ss_pred ceeeeeecCCCcccccCcceeeEEEEecC---CEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeee
Q 009993 405 RVSRVIEVEPPQRMLHGFECNLLSVDIGA---DRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEM 481 (520)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (520)
.....+.+|...++.+.+++ ....+++.||...|||+-.+..++... .-+-......|
T Consensus 386 ---------~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~----------~gh~kl~d~kF 446 (1113)
T KOG0644|consen 386 ---------QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF----------IGHGKLVDGKF 446 (1113)
T ss_pred ---------hhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee----------cccceeecccc
Confidence 33444566666655555443 378899999999999999887665432 11344577899
Q ss_pred ccCCCcccc
Q 009993 482 SSKGGRTDQ 490 (520)
Q Consensus 482 s~~g~~~~~ 490 (520)
|+||..++.
T Consensus 447 Sqdgts~~l 455 (1113)
T KOG0644|consen 447 SQDGTSIAL 455 (1113)
T ss_pred CCCCceEec
Confidence 999987765
No 204
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=7e-14 Score=124.91 Aligned_cols=301 Identities=16% Similarity=0.138 Sum_probs=194.0
Q ss_pred EeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceE-EeccCCCCeEEEEE--cCCEEEEE
Q 009993 179 SSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQF-RLWEHEGPITSLAL--DLTRIYSG 253 (520)
Q Consensus 179 ~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~--~~~~l~s~ 253 (520)
.+.+|.+.|.++. .++.+|++|+.|..+++|++..... ....+++. .-..|...|.|++| ....+++|
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~-------~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG 123 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV-------RKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSG 123 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHh-------hcCCCCceeccCccccceEEEEEccCCeeEecC
Confidence 3457877777665 7889999999999999999865321 01111222 22346689999999 44679999
Q ss_pred ecCCeEEEEECCCCcEEEEeeecc---CEEEEe--eCCCEEEEEc-CCeEEEEECCCCe-eeEEee-cccccceEEEEec
Q 009993 254 SWDMTVRVWDRALLKCLKVLRHSD---WVYGLA--PHDTTVASTS-GSDVYIWDTNSGC-LLTVVN-GAHVGNTKSLARS 325 (520)
Q Consensus 254 s~dg~v~iwd~~~~~~~~~~~~~~---~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~-~~~~~~-~~~~~~i~~l~~s 325 (520)
..+++|...|+++.+.+.++.|.+ .|+.+. |..+.+++.+ ++.|.+||.+..+ +...+. .........+.|+
T Consensus 124 ~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~ 203 (609)
T KOG4227|consen 124 ERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFH 203 (609)
T ss_pred CCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeec
Confidence 999999999999999999998655 888887 7788888888 8999999998765 222221 1245677889999
Q ss_pred CCC-CEEEEEeCCCeEEEEEcccCccccceeeeeeecCCc------CCEEEEEecC--CEEEEEeCCCcEEEEeCCcccc
Q 009993 326 HTG-DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT------GPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLR 396 (520)
Q Consensus 326 ~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~------~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~ 396 (520)
|.. .+|++.+..+-+.+||.+.... ++....+.. ..-.++.|+| ..|++--....-.+||+-+...
T Consensus 204 P~~P~Li~~~~~~~G~~~~D~R~~~~-----~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~ 278 (609)
T KOG4227|consen 204 PETPALILVNSETGGPNVFDRRMQAR-----PVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRC 278 (609)
T ss_pred CCCceeEEeccccCCCCceeeccccc-----hHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccc
Confidence 954 5788888999999999988742 222222211 1124556754 4555555444555666654211
Q ss_pred cCCCCCCCceeeeeecC-CCcccccCcceeeEEEEecCC-EEEEecCCCeEEEEeCCchHhHHHH-------------hh
Q 009993 397 SGRPTSGKRVSRVIEVE-PPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEIERR-------------AR 461 (520)
Q Consensus 397 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~~~~~-------------~~ 461 (520)
.. .... .+...+ ....+-++.|-++ .+++|+.+-.|++|.+.......-. .-
T Consensus 279 ~V-----------~k~D~N~~GY~--N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~ 345 (609)
T KOG4227|consen 279 FV-----------LKSDHNPNGYC--NIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIF 345 (609)
T ss_pred ee-----------EeccCCCCcce--eeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhhe
Confidence 10 0000 000001 1123344445454 6999999999999998643221110 01
Q ss_pred hhcccccchhhhhccceeeeccCCCcccccccccccCCCCCCcceeeeccc
Q 009993 462 ALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKR 512 (520)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~~~~~~~~~~~~~~~~~~~ 512 (520)
........+.++.-+.++.|+|....|.+..+. ....||..-|
T Consensus 346 i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE--------~~~KlWS~~r 388 (609)
T KOG4227|consen 346 IEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVE--------NSFKLWSDHR 388 (609)
T ss_pred ecceeEEEecccccccceeecCCcceEeccchh--------hheecccccc
Confidence 112223456667778999999999888876642 2236776543
No 205
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.58 E-value=2.9e-14 Score=134.81 Aligned_cols=235 Identities=19% Similarity=0.216 Sum_probs=155.2
Q ss_pred EecCCCEEEE--EeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEEC
Q 009993 190 VAADKKLLVA--GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDR 264 (520)
Q Consensus 190 ~~~~~~~l~s--g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~ 264 (520)
++.+...+++ ++..|.|.|+++....... ....-.+ .....|+++.| |...|++++.||.|++|.+
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLP--------Dgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~ 657 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLP--------DGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRL 657 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCC--------ccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEe
Confidence 3344455554 3556899999986543110 1111111 24567999999 5689999999999999998
Q ss_pred CCCc-------EEEEee-eccCEEEEeeC---CCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEE
Q 009993 265 ALLK-------CLKVLR-HSDWVYGLAPH---DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLF 332 (520)
Q Consensus 265 ~~~~-------~~~~~~-~~~~v~~~~~~---~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 332 (520)
..+. ....+. |...|+++..+ ...|++++ |.+|++||+.+++....+. +|.+.|..++|+|+|+.++
T Consensus 658 ~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~-gHtdqIf~~AWSpdGr~~A 736 (1012)
T KOG1445|consen 658 TANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV-GHTDQIFGIAWSPDGRRIA 736 (1012)
T ss_pred ccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec-cCcCceeEEEECCCCccee
Confidence 7543 233343 88889998844 45677777 9999999999999888887 7999999999999999999
Q ss_pred EEeCCCeEEEEEcccCccccceeeeeeecCCcC-CEEEEEe--cCCEEEEEeCC----CcEEEEeCCcccccCCCCCCCc
Q 009993 333 TGGEDGAIHMYEIINDCTEANVLLVATWIPHTG-PVNSLAF--EFPWLVSAAGD----GKLSLIDVRKLLRSGRPTSGKR 405 (520)
Q Consensus 333 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~-~v~~l~~--~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~ 405 (520)
+.+.||+|++|+.+... .+++.-.+..+ .--.|.| ++.++++.+.| ..|.+||..+..... -
T Consensus 737 tVcKDg~~rVy~Prs~e-----~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~p------l 805 (1012)
T KOG1445|consen 737 TVCKDGTLRVYEPRSRE-----QPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRP------L 805 (1012)
T ss_pred eeecCceEEEeCCCCCC-----CccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCc------c
Confidence 99999999999998874 23333222111 1123444 67777776655 568888877632100 0
Q ss_pred eeeeeecCCCcccccCcceeeEEEEecCC-EEEEecCCCeEEEEeCCch
Q 009993 406 VSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQA 453 (520)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~~ 453 (520)
........+ ..-+-..+++.. +++||-.|..|.+|++-..
T Consensus 806 ~t~~lDvap--------s~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 806 YTQVLDVAP--------SPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred eeeeecccC--------ccccccccCCCceEEEecCCCceEEEEEecCC
Confidence 000000000 011112233333 8889999999999998654
No 206
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.57 E-value=7.6e-15 Score=133.94 Aligned_cols=223 Identities=14% Similarity=0.165 Sum_probs=171.1
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeec
Q 009993 144 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDI 221 (520)
Q Consensus 144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 221 (520)
.-+.+.++.+|++|+.|+.-|.|-.+|..++.....+... ..|.++. .+..++|+ .....++|||-..
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-Etv~Dv~~LHneq~~AV-AQK~y~yvYD~~G-------- 200 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-ETVRDVTFLHNEQFFAV-AQKKYVYVYDNNG-------- 200 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh-hhhhhhhhhcchHHHHh-hhhceEEEecCCC--------
Confidence 3467889999999999999999999999999887776432 2333333 34444444 4556788888432
Q ss_pred cCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CC
Q 009993 222 SGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GS 295 (520)
Q Consensus 222 ~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~ 295 (520)
.....+..| ..|..+.|=+ =+|++++..|.++.-|+.+|+.+..+. ..+.+..+. |.+..+-.|. .|
T Consensus 201 ------tElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnG 273 (545)
T KOG1272|consen 201 ------TELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNG 273 (545)
T ss_pred ------cEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCc
Confidence 244445444 5677788833 457888899999999999999998887 444555554 7777888888 89
Q ss_pred eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCC
Q 009993 296 DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP 375 (520)
Q Consensus 296 ~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 375 (520)
+|.+|.+...+++..+. .|.++|.++++.++|.+++|.+.|..++|||+++. ..+.++.. .-+...++++..
T Consensus 274 tVSlWSP~skePLvKiL-cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~------~ql~t~~t-p~~a~~ls~Sqk 345 (545)
T KOG1272|consen 274 TVSLWSPNSKEPLVKIL-CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF------YQLHTYRT-PHPASNLSLSQK 345 (545)
T ss_pred eEEecCCCCcchHHHHH-hcCCCcceEEECCCCcEEeecccccceeEeeeccc------cccceeec-CCCccccccccc
Confidence 99999999999988887 49999999999999999999999999999999988 33444333 346678889887
Q ss_pred EEEEEeCCCcEEEEeC
Q 009993 376 WLVSAAGDGKLSLIDV 391 (520)
Q Consensus 376 ~l~s~s~dg~i~vwd~ 391 (520)
-+++.+....|.||.=
T Consensus 346 glLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 346 GLLALSYGDHVQIWKD 361 (545)
T ss_pred cceeeecCCeeeeehh
Confidence 7777777778999953
No 207
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=4e-13 Score=132.69 Aligned_cols=217 Identities=16% Similarity=0.130 Sum_probs=152.1
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCC---CeEEEEECCCCcE--EEEeCCCCceEEEEecCCCEEEEEe-CCCcEEE
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYD---SIVRMWHLEDGFS--IASSKPLGCTIRAVAADKKLLVAGG-TDGFIHC 208 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~d---g~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~l~sg~-~dg~i~v 208 (520)
.+.+..|...|...+|+|||+.|+.++.+ ..|++||+.+++. +..+.++.. ..+++|+|+.|+.++ .+|.+.+
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g~~~I 274 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDGVLNI 274 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCCcEEE
Confidence 45677888899999999999999987754 4699999988753 444555544 357889999888764 6887766
Q ss_pred EE--cccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEe-cCCeEEEEECCCC-cEEEEeeeccCEEEE
Q 009993 209 WR--AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDRALL-KCLKVLRHSDWVYGL 282 (520)
Q Consensus 209 wd--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s-~dg~v~iwd~~~~-~~~~~~~~~~~v~~~ 282 (520)
|. +.++ ....+..+...+....| +++.|+.++ .+|...+|++... .....+.+......+
T Consensus 275 y~~d~~~~--------------~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~ 340 (429)
T PRK01742 275 YVMGANGG--------------TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQI 340 (429)
T ss_pred EEEECCCC--------------CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccC
Confidence 64 4333 23344556667778888 777766554 5788888876432 222223332222345
Q ss_pred eeCCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcc--cCccccceeeeeee
Q 009993 283 APHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEII--NDCTEANVLLVATW 360 (520)
Q Consensus 283 ~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~--~~~~~~~~~~~~~~ 360 (520)
+|+++.++..+...+.+||+.+++...... .+ ....+.|+|+|++|+.++.++.+.+|++. ++ .....+
T Consensus 341 SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~-~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G------~~~~~l 411 (429)
T PRK01742 341 SADGKTLVMINGDNVVKQDLTSGSTEVLSS-TF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADG------RFKARL 411 (429)
T ss_pred CCCCCEEEEEcCCCEEEEECCCCCeEEecC-CC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCC------CceEEc
Confidence 699999988885567779999887543322 22 23567899999999999999988888864 34 456677
Q ss_pred cCCcCCEEEEEecCC
Q 009993 361 IPHTGPVNSLAFEFP 375 (520)
Q Consensus 361 ~~h~~~v~~l~~~~~ 375 (520)
..|.+.+...+|+|.
T Consensus 412 ~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 412 PGSDGQVKFPAWSPY 426 (429)
T ss_pred cCCCCCCCCcccCCC
Confidence 788888888999873
No 208
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.56 E-value=2.1e-13 Score=136.53 Aligned_cols=267 Identities=13% Similarity=0.133 Sum_probs=180.1
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCC-CCceEEE----EecCCCEEEEEeCCCcEEEEEcccCcc
Q 009993 142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP-LGCTIRA----VAADKKLLVAGGTDGFIHCWRAVEVLP 216 (520)
Q Consensus 142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~-~~~~v~~----~~~~~~~l~sg~~dg~i~vwd~~~~~~ 216 (520)
-+++++.++-. ++|++|+ .-.|.++|+.++..+..+.. +...+.. +.-.+.+++++..-+.+..=+....
T Consensus 7 ~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~-- 81 (967)
T KOG0974|consen 7 LGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEASNQ-- 81 (967)
T ss_pred cccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEeecceeecchhhh--
Confidence 34555555543 6677665 45699999998876554421 1111111 1123456666666555543322111
Q ss_pred eeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEE-------EeeCCCEE
Q 009993 217 HLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYG-------LAPHDTTV 289 (520)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~-------~~~~~~~l 289 (520)
....+..+... ..+.++...++.++.+..+.+||...+.....+.+.....- .+++.-++
T Consensus 82 ------------~~~~~s~wi~g-~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i 148 (967)
T KOG0974|consen 82 ------------IIERFSDWIFG-AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYI 148 (967)
T ss_pred ------------hhhhccccccc-cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEE
Confidence 11111122211 33444778888899999999999988877777665443332 22667788
Q ss_pred EEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEE
Q 009993 290 ASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN 368 (520)
Q Consensus 290 ~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~ 368 (520)
++|+ -+.|.+|+.........+. +|.+.|.++.++.+|.++++.++|.++++|++.+.+. ...+..+|+..|.
T Consensus 149 ~~gsv~~~iivW~~~~dn~p~~l~-GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~-----~~~~~fgHsaRvw 222 (967)
T KOG0974|consen 149 ASGSVFGEIIVWKPHEDNKPIRLK-GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV-----LGCTGFGHSARVW 222 (967)
T ss_pred EeccccccEEEEeccccCCcceec-ccCCceEEEEEccCCcEEEEEecCcceeeeecccccc-----cCcccccccceeE
Confidence 8888 7999999998443333344 7999999999999999999999999999999999842 2246679999999
Q ss_pred EEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcc-eeeEEEEecC--CEEEEecCCCeE
Q 009993 369 SLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE-CNLLSVDIGA--DRIVCGGEEGIV 445 (520)
Q Consensus 369 ~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~--~~l~sg~~Dg~v 445 (520)
.+.|.|+.+++++.|.+.++|+..... . ..+.+|. ..+..+.... -.++|++.||.+
T Consensus 223 ~~~~~~n~i~t~gedctcrvW~~~~~~-------------------l-~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~l 282 (967)
T KOG0974|consen 223 ACCFLPNRIITVGEDCTCRVWGVNGTQ-------------------L-EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTL 282 (967)
T ss_pred EEEeccceeEEeccceEEEEEecccce-------------------e-hhhhhhhhcceeEEEEcCCceEEEeeccCcch
Confidence 999999999999999999999765421 1 1233333 2344444433 399999999999
Q ss_pred EEEeCCc
Q 009993 446 RIWNFSQ 452 (520)
Q Consensus 446 ~iwd~~~ 452 (520)
++|++..
T Consensus 283 k~~~l~~ 289 (967)
T KOG0974|consen 283 KLWDLNG 289 (967)
T ss_pred hhhhhhc
Confidence 9999864
No 209
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.56 E-value=1.1e-14 Score=132.93 Aligned_cols=224 Identities=16% Similarity=0.225 Sum_probs=171.7
Q ss_pred CceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEE
Q 009993 184 GCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVW 262 (520)
Q Consensus 184 ~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iw 262 (520)
+..-...+.+|..++.|+.-|.|..+|+.++.. ..-..-...|.++.| ....+++......++||
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L--------------~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvY 196 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL--------------HFEINVMETVRDVTFLHNEQFFAVAQKKYVYVY 196 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeeccccee--------------eeeeehhhhhhhhhhhcchHHHHhhhhceEEEe
Confidence 344456678999999999999999999988631 112234567888888 55555555666899999
Q ss_pred ECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCe
Q 009993 263 DRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA 339 (520)
Q Consensus 263 d~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~ 339 (520)
|- .|..++.+.....|..+. |.--+|++++ .|.++.-|+.+|+.+..+.. ..+.+..|+-+|-...+-+|...|+
T Consensus 197 D~-~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t-~~G~~~vm~qNP~NaVih~GhsnGt 274 (545)
T KOG1272|consen 197 DN-NGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT-GAGRTDVMKQNPYNAVIHLGHSNGT 274 (545)
T ss_pred cC-CCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc-cCCccchhhcCCccceEEEcCCCce
Confidence 95 466667676666677776 6777778888 79999999999999998874 6778889999999999999999999
Q ss_pred EEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcc
Q 009993 340 IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQR 417 (520)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (520)
|.+|..... .++..+..|.++|.+|++++ .+++|.+.|..++|||+++......
T Consensus 275 VSlWSP~sk------ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t------------------ 330 (545)
T KOG1272|consen 275 VSLWSPNSK------EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHT------------------ 330 (545)
T ss_pred EEecCCCCc------chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccce------------------
Confidence 999999888 67778889999999999975 7999999999999999998632211
Q ss_pred cccCcceeeEEEEecCCEEEEecCCCeEEEEe
Q 009993 418 MLHGFECNLLSVDIGADRIVCGGEEGIVRIWN 449 (520)
Q Consensus 418 ~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd 449 (520)
....| ....++++..-+++.|....|.||.
T Consensus 331 ~~tp~--~a~~ls~SqkglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 331 YRTPH--PASNLSLSQKGLLALSYGDHVQIWK 360 (545)
T ss_pred eecCC--CccccccccccceeeecCCeeeeeh
Confidence 11112 2334455566455555556799995
No 210
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=7.6e-13 Score=118.67 Aligned_cols=238 Identities=14% Similarity=0.181 Sum_probs=175.0
Q ss_pred cccccEEEEEEccCC--CEEEEEeCCCeEEEEECCCCcEEEE------eCCCCceEEEEecCCCEEEEEeCCCcEEEEEc
Q 009993 140 GHTEAVLTVFVLASA--KLLFTSGYDSIVRMWHLEDGFSIAS------SKPLGCTIRAVAADKKLLVAGGTDGFIHCWRA 211 (520)
Q Consensus 140 ~h~~~V~~l~~~~~~--~~l~sgs~dg~v~vwd~~~~~~~~~------~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 211 (520)
.-...|+.++|.-++ +.+...+.|..+..+.++....... ......+|..+...+..|++|-.+|.+.+|..
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHD 132 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEec
Confidence 345677888887554 4666666777788887776654433 23455677777767778889999999999998
Q ss_pred ccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecC--CeEEEEECCCCcEEEEee----------ec
Q 009993 212 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWD--MTVRVWDRALLKCLKVLR----------HS 276 (520)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~d--g~v~iwd~~~~~~~~~~~----------~~ 276 (520)
+.+..+ ......+..+ ..+..+.- ++..+++|+.. ..+++||+++.+.+..-. -+
T Consensus 133 k~~d~h---------ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVP 202 (412)
T KOG3881|consen 133 KSGDLH---------SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVP 202 (412)
T ss_pred cCCccc---------cccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceee
Confidence 765321 1122222222 33434433 45677889988 889999999886555432 22
Q ss_pred cCEEEEe--eC--CCEEEEEc-CCeEEEEECCCCe-eeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcc
Q 009993 277 DWVYGLA--PH--DTTVASTS-GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCT 350 (520)
Q Consensus 277 ~~v~~~~--~~--~~~l~~~~-d~~i~iwd~~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~ 350 (520)
-+++++. +. ...|++++ -+.+++||++.++ ++..+. -...+++++...|+++++++|..-|.+..||++.+
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd-~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~-- 279 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD-FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG-- 279 (412)
T ss_pred eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEec-cccCcceeeeecCCCcEEEEecccchhheecccCc--
Confidence 3444444 33 67788888 8999999999774 566665 35778999999999999999999999999999999
Q ss_pred ccceeeeee-ecCCcCCEEEEEecCC--EEEEEeCCCcEEEEeCCcc
Q 009993 351 EANVLLVAT-WIPHTGPVNSLAFEFP--WLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 351 ~~~~~~~~~-~~~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~~~ 394 (520)
..... +.+-.+.|++|..+|. +|+++|-|..|+|+|+.+.
T Consensus 280 ----kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 280 ----KLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ----eeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 44444 8889999999999985 9999999999999999984
No 211
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=7.4e-14 Score=130.04 Aligned_cols=228 Identities=20% Similarity=0.287 Sum_probs=152.6
Q ss_pred ceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee--eccCEEEEe----eCCCEEEEEc-CCeEEE
Q 009993 229 TQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA----PHDTTVASTS-GSDVYI 299 (520)
Q Consensus 229 ~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~----~~~~~l~~~~-d~~i~i 299 (520)
....+.||++.|+|+.| +|.+|++||.|-.+.|||.-..+.+..+. |...|.++. .+++.+++|. |..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 44567899999999999 88999999999999999999888888886 889999987 4567788888 999999
Q ss_pred EECCCC----------eeeEEeecccccceEEEEecCCC-CEEEEEeCCCeEEEEEcccCccccc----eeeeeeecCCc
Q 009993 300 WDTNSG----------CLLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEAN----VLLVATWIPHT 364 (520)
Q Consensus 300 wd~~~~----------~~~~~~~~~~~~~i~~l~~s~~~-~~l~tg~~dg~i~iwd~~~~~~~~~----~~~~~~~~~h~ 364 (520)
||+... .....+. .|...|..++..|++ ..+.++++||+|+-||++....-.. ...+..+.+.-
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~-cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWS-CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EecccccccccccCccchhhhhh-hhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 999852 2223333 588889999999988 7889999999999999988531100 00111111222
Q ss_pred CCEEEEEecC---CEEEEEeCCCcEEEEeCCcccccCCCCCCCc--------eeeeeecCCCcccccC----cc--eeeE
Q 009993 365 GPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKR--------VSRVIEVEPPQRMLHG----FE--CNLL 427 (520)
Q Consensus 365 ~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~----~~--~~v~ 427 (520)
-...|+..+| .+|++|+.|-..++||.+...+......... ..+....... ....+ .. ..-.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl-kn~~gn~~~~~~~~t~v 279 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL-KNSQGNLDRYITCCTYV 279 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc-cCcccccccceeeeEEE
Confidence 3456777765 6999999999999999765433321111000 0000000000 00111 00 1223
Q ss_pred EEEecCC-EEEEecCCCeEEEEeCCchHhHHHH
Q 009993 428 SVDIGAD-RIVCGGEEGIVRIWNFSQAFEIERR 459 (520)
Q Consensus 428 ~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~~~~~ 459 (520)
.+.|+|. +|++-+.+ .|+++|+..++.+...
T Consensus 280 tfnpNGtElLvs~~gE-hVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 280 TFNPNGTELLVSWGGE-HVYLFDVNEDKSPTPY 311 (758)
T ss_pred EECCCCcEEEEeeCCe-EEEEEeecCCCCceee
Confidence 3444554 77776665 6999999887665443
No 212
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=1e-13 Score=125.49 Aligned_cols=188 Identities=24% Similarity=0.296 Sum_probs=139.3
Q ss_pred eEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEE
Q 009993 186 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWD 263 (520)
Q Consensus 186 ~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd 263 (520)
.+.++..+|..+++|+.||++++|++.+. ........|.+.|.++.| |+..|++-+.| ..+||+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~-------------~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~ 213 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM-------------LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWS 213 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc-------------hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEE
Confidence 67788899999999999999999997543 244556689999999999 88899999999 899999
Q ss_pred CCCCcEEEEee--eccCEEE---EeeCC---CEEEEEc---CCeEEEEECCCCee-----eEEeecccccceEEEEecCC
Q 009993 264 RALLKCLKVLR--HSDWVYG---LAPHD---TTVASTS---GSDVYIWDTNSGCL-----LTVVNGAHVGNTKSLARSHT 327 (520)
Q Consensus 264 ~~~~~~~~~~~--~~~~v~~---~~~~~---~~l~~~~---d~~i~iwd~~~~~~-----~~~~~~~~~~~i~~l~~s~~ 327 (520)
.+++..+.... ..+...+ +..++ .+.+.+. .+.|+.||+..... .+... .....|++++.+++
T Consensus 214 ~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~d 292 (398)
T KOG0771|consen 214 VNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDD 292 (398)
T ss_pred eccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCC
Confidence 99997766654 2222221 11222 2333322 36677766643221 11111 13447999999999
Q ss_pred CCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993 328 GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 328 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 393 (520)
|++++.|+.||.|.|++....+ .....-..|...|+.+.|.| +++++.+.|....|..+.-
T Consensus 293 Gkf~AlGT~dGsVai~~~~~lq-----~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 293 GKFLALGTMDGSVAIYDAKSLQ-----RLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEeccCCcEEEEEeceee-----eeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999999999999998874 23344567999999999988 6889999998888887764
No 213
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.52 E-value=1.6e-11 Score=117.64 Aligned_cols=239 Identities=11% Similarity=0.106 Sum_probs=146.9
Q ss_pred cccEEEEEEccCCCEEEEEe-CCCeEEEEECC-CCcE--EEEeC-CCCceEEEEecCCCEEEEEeC-CCcEEEEEcccCc
Q 009993 142 TEAVLTVFVLASAKLLFTSG-YDSIVRMWHLE-DGFS--IASSK-PLGCTIRAVAADKKLLVAGGT-DGFIHCWRAVEVL 215 (520)
Q Consensus 142 ~~~V~~l~~~~~~~~l~sgs-~dg~v~vwd~~-~~~~--~~~~~-~~~~~v~~~~~~~~~l~sg~~-dg~i~vwd~~~~~ 215 (520)
.+....++++|++++|++++ .++.|.+|++. ++.. +.... +....-.+++++++++++++. ++.|.+|++.+..
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 35567889999999887765 47889999996 3332 22222 112234566799998888765 7899999986421
Q ss_pred ceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEE-EecCCeEEEEECCCCcEEE-------EeeeccCE--EEEe
Q 009993 216 PHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYS-GSWDMTVRVWDRALLKCLK-------VLRHSDWV--YGLA 283 (520)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s-~s~dg~v~iwd~~~~~~~~-------~~~~~~~v--~~~~ 283 (520)
.. ......+. +......+++ +++++++ ...++.|.+||+.+...+. ........ ..+.
T Consensus 114 ~~---------~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~ 183 (330)
T PRK11028 114 IP---------VAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFH 183 (330)
T ss_pred CC---------CCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEEC
Confidence 10 01111121 2233455666 5667754 4456999999997643221 11111222 3445
Q ss_pred eCCCEEEEEc--CCeEEEEECCC--Ce--eeEEeec--c---cccceEEEEecCCCCEEEEEeC-CCeEEEEEcccCccc
Q 009993 284 PHDTTVASTS--GSDVYIWDTNS--GC--LLTVVNG--A---HVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIINDCTE 351 (520)
Q Consensus 284 ~~~~~l~~~~--d~~i~iwd~~~--~~--~~~~~~~--~---~~~~i~~l~~s~~~~~l~tg~~-dg~i~iwd~~~~~~~ 351 (520)
+++++++++. ++.|.+||+.. ++ .+..+.. . +......+.++|++++++++.. ++.|.+|++......
T Consensus 184 pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~ 263 (330)
T PRK11028 184 PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV 263 (330)
T ss_pred CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe
Confidence 8999988876 79999999973 32 2333321 0 1122346889999999998854 789999999654211
Q ss_pred cceeeeeeecCCcCCEEEEEecC--CEEEEEeC-CCcEEEEeCCc
Q 009993 352 ANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG-DGKLSLIDVRK 393 (520)
Q Consensus 352 ~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~-dg~i~vwd~~~ 393 (520)
...+...... .....+.++| ++|+++.. +++|.+|++..
T Consensus 264 --~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 264 --LSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred --EEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 1122222111 2345677764 67777665 89999998853
No 214
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=4.2e-12 Score=113.98 Aligned_cols=206 Identities=14% Similarity=0.093 Sum_probs=157.1
Q ss_pred eccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCc----EEEEeeeccCEEEEe---eCCCEEEEEc-C--CeEEEEEC
Q 009993 233 LWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLK----CLKVLRHSDWVYGLA---PHDTTVASTS-G--SDVYIWDT 302 (520)
Q Consensus 233 ~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~----~~~~~~~~~~v~~~~---~~~~~l~~~~-d--~~i~iwd~ 302 (520)
.....++|..++.....|++|-.+|.+.+|....+. .+..+.....+..+. .+...+++|+ . ..+.+||+
T Consensus 101 ~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdl 180 (412)
T KOG3881|consen 101 VSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDL 180 (412)
T ss_pred cccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeec
Confidence 344567888888877888999999999999988543 333444455566665 4455666677 6 77999999
Q ss_pred CCCeeeEEeeccc--------ccceEEEEecCC--CCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe
Q 009993 303 NSGCLLTVVNGAH--------VGNTKSLARSHT--GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF 372 (520)
Q Consensus 303 ~~~~~~~~~~~~~--------~~~i~~l~~s~~--~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 372 (520)
+..+.+..-.... .-.++.+.|.+. ...|++++.-+.+++||.+.+. .++..+.--..+++++..
T Consensus 181 e~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-----RPV~~fd~~E~~is~~~l 255 (412)
T KOG3881|consen 181 EQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR-----RPVAQFDFLENPISSTGL 255 (412)
T ss_pred ccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC-----cceeEeccccCcceeeee
Confidence 9986665543211 224678889887 7889999999999999999775 577777777788888888
Q ss_pred cC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EEEEecCCCeEEEE
Q 009993 373 EF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIW 448 (520)
Q Consensus 373 ~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iw 448 (520)
.| +++++|..-|.+..+|++.+.. ....+.+.++++.++..++. +++++|-|..|||+
T Consensus 256 ~p~gn~Iy~gn~~g~l~~FD~r~~kl------------------~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIh 317 (412)
T KOG3881|consen 256 TPSGNFIYTGNTKGQLAKFDLRGGKL------------------LGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIH 317 (412)
T ss_pred cCCCcEEEEecccchhheecccCcee------------------eccccCCccCCcceEEEcCCCceEEeeccceeEEEe
Confidence 54 7999999999999999998632 22335667777888887776 99999999999999
Q ss_pred eCCchHhHHHHhh
Q 009993 449 NFSQAFEIERRAR 461 (520)
Q Consensus 449 d~~~~~~~~~~~~ 461 (520)
|+.+...+.+...
T Consensus 318 D~ktrkll~kvYv 330 (412)
T KOG3881|consen 318 DIKTRKLLHKVYV 330 (412)
T ss_pred ecccchhhhhhhh
Confidence 9999776665433
No 215
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=8.8e-13 Score=121.38 Aligned_cols=298 Identities=17% Similarity=0.135 Sum_probs=197.3
Q ss_pred EEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE----cCCEE
Q 009993 177 IASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRI 250 (520)
Q Consensus 177 ~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l 250 (520)
...+.+|.+.|..+. ..|..|++|+.|..|.+||+..+.. ...-..+|...|..-.| +...+
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~------------~l~f~SGH~~NvfQaKFiP~s~d~ti 202 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP------------KLSFESGHCNNVFQAKFIPFSGDRTI 202 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCc------------ccccccccccchhhhhccCCCCCcCc
Confidence 345677887777666 7799999999999999999977632 22233478777777677 44679
Q ss_pred EEEecCCeEEEEECC-CCcEEEEe---eeccCEEEEe--e-CCCEEEEEc-CCeEEEEECCCCeeeEEee--ccccc---
Q 009993 251 YSGSWDMTVRVWDRA-LLKCLKVL---RHSDWVYGLA--P-HDTTVASTS-GSDVYIWDTNSGCLLTVVN--GAHVG--- 317 (520)
Q Consensus 251 ~s~s~dg~v~iwd~~-~~~~~~~~---~~~~~v~~~~--~-~~~~l~~~~-d~~i~iwd~~~~~~~~~~~--~~~~~--- 317 (520)
++++.||.|++=.+. ++.+..+. +|.++|.-++ | ....|.+++ |+.+.-+|++.+.+...+. ..+..
T Consensus 203 ~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v 282 (559)
T KOG1334|consen 203 VTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERV 282 (559)
T ss_pred eeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccce
Confidence 999999999998764 34333233 3888888777 4 455667766 9999999999875543332 12333
Q ss_pred ceEEEEecCCCC-EEEEEeCCCeEEEEEcccCccccceeeeeeecC------CcCCEEEEEec--CCEEEEEeCCCcEEE
Q 009993 318 NTKSLARSHTGD-FLFTGGEDGAIHMYEIINDCTEANVLLVATWIP------HTGPVNSLAFE--FPWLVSAAGDGKLSL 388 (520)
Q Consensus 318 ~i~~l~~s~~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~------h~~~v~~l~~~--~~~l~s~s~dg~i~v 388 (520)
..+.++..|... .+++|+.|..+++||.+.-........+..+.. ....|++++|+ +.-|.++-.|-.|++
T Consensus 283 ~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYL 362 (559)
T KOG1334|consen 283 GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYL 362 (559)
T ss_pred eeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEE
Confidence 567888888554 899999999999999876543322222233322 23468999996 455566666778999
Q ss_pred EeCCcccccCCCCCCCceeeeeecCCCcccccCcce--eeEEEEec---CCEEEEecCCCeEEEEeCCchHhHHHHhhhh
Q 009993 389 IDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC--NLLSVDIG---ADRIVCGGEEGIVRIWNFSQAFEIERRARAL 463 (520)
Q Consensus 389 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~---~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~ 463 (520)
+.-..+... .+..... .-....+.+.||.. .|-.+.|- ..++++|++-|.|.||+-.+++.+.-.
T Consensus 363 F~~~~~~G~-~p~~~s~-----~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M---- 432 (559)
T KOG1334|consen 363 FNKSMGDGS-EPDPSSP-----REQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM---- 432 (559)
T ss_pred eccccccCC-CCCCCcc-----hhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHh----
Confidence 954432110 0000000 00111223566663 34445443 459999999999999999988776543
Q ss_pred cccccchhhhhccceeeeccCCCcccccccccccCCCCCCcceeeec
Q 009993 464 RGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHN 510 (520)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~~~~~~~~~~~~~~~~~ 510 (520)
++. +.-+.+++-+|--..||++.++... .||..
T Consensus 433 egD------r~VVNCLEpHP~~PvLAsSGid~DV--------KIWTP 465 (559)
T KOG1334|consen 433 EGD------RHVVNCLEPHPHLPVLASSGIDHDV--------KIWTP 465 (559)
T ss_pred hcc------cceEeccCCCCCCchhhccCCccce--------eeecC
Confidence 221 1236788889999999998875433 78876
No 216
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=2.6e-12 Score=120.65 Aligned_cols=258 Identities=16% Similarity=0.218 Sum_probs=175.2
Q ss_pred EEEecCCCEE-EEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCC-CCeEEEEE---cCCEEEEEecCCeEEEE
Q 009993 188 RAVAADKKLL-VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE-GPITSLAL---DLTRIYSGSWDMTVRVW 262 (520)
Q Consensus 188 ~~~~~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~---~~~~l~s~s~dg~v~iw 262 (520)
..+++||.++ ++|..--.|++||+..- ...+..|. ..+..+.. |-..++.-..|.+|.+.
T Consensus 57 ik~s~DGqY~lAtG~YKP~ikvydlanL---------------SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefH 121 (703)
T KOG2321|consen 57 IKVSPDGQYLLATGTYKPQIKVYDLANL---------------SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFH 121 (703)
T ss_pred eEecCCCcEEEEecccCCceEEEEcccc---------------eeeeeecccccceeEEEeccchhhheEeecCceeeeh
Confidence 4566999975 56777889999998542 23333342 34444443 22445666667777665
Q ss_pred ECCCCcEEEEeeeccCEEEEe-eCCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEE
Q 009993 263 DRALLKCLKVLRHSDWVYGLA-PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIH 341 (520)
Q Consensus 263 d~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~ 341 (520)
..-.......++..+.=.+.. +...++++|++..|+-++++.|+-+..+.. ..+.++++..++-..+|++|+.+|.|-
T Consensus 122 ak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~-~~~~lN~v~in~~hgLla~Gt~~g~VE 200 (703)
T KOG2321|consen 122 AKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET-DSGELNVVSINEEHGLLACGTEDGVVE 200 (703)
T ss_pred hhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc-ccccceeeeecCccceEEecccCceEE
Confidence 432211111112222222333 677888888899999999999999888873 668999999999999999999999999
Q ss_pred EEEcccCccccceeeeeeecCCcC-----CEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCC
Q 009993 342 MYEIINDCTEANVLLVATWIPHTG-----PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEP 414 (520)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 414 (520)
+||.+.......+........|.+ .|+++.|+. -.+++|+.+|.|.|||+++. .+
T Consensus 201 fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~------------------~p 262 (703)
T KOG2321|consen 201 FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS------------------KP 262 (703)
T ss_pred EecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC------------------Cc
Confidence 999998855444444444344444 499999954 58999999999999999985 33
Q ss_pred CcccccCcceeeEEEEecC----CEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccc
Q 009993 415 PQRMLHGFECNLLSVDIGA----DRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQ 490 (520)
Q Consensus 415 ~~~~~~~~~~~v~~~~~~~----~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~ 490 (520)
....-++...++..+.|.. ..++|.. ...++|||-.+|......... .....+++-|+++.+..
T Consensus 263 l~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt-----------~~lND~C~~p~sGm~f~ 330 (703)
T KOG2321|consen 263 LLVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEPT-----------SDLNDFCFVPGSGMFFT 330 (703)
T ss_pred eeecccCCccceeeecccccCCCceEEecc-hHHhhhcccccCCceeecccc-----------CCcCceeeecCCceEEE
Confidence 3344456666777777733 2666655 468999999988765443222 22467888888877655
Q ss_pred c
Q 009993 491 C 491 (520)
Q Consensus 491 ~ 491 (520)
+
T Consensus 331 A 331 (703)
T KOG2321|consen 331 A 331 (703)
T ss_pred e
Confidence 3
No 217
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=1.4e-11 Score=115.81 Aligned_cols=276 Identities=13% Similarity=0.109 Sum_probs=180.1
Q ss_pred hhhhccccccEEEEEEccCCCEEE-EEeCCCeEEEEECCCCcEEEEeCCC-CceEEEE---ecCCCEEEEEeCCCcEEEE
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLF-TSGYDSIVRMWHLEDGFSIASSKPL-GCTIRAV---AADKKLLVAGGTDGFIHCW 209 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~-sgs~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~---~~~~~~l~sg~~dg~i~vw 209 (520)
++.| +|...-+.+..+|||+|+. ||.+--.|++||+.+-... +.-| ...++.+ +.|-..++.-..|.+|.+-
T Consensus 45 iQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~IefH 121 (703)
T KOG2321|consen 45 IQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFH 121 (703)
T ss_pred HHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeeeh
Confidence 4443 5777788999999999755 6777889999999765332 2222 2233333 3455555555666666543
Q ss_pred EcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--e
Q 009993 210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--P 284 (520)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~ 284 (520)
... |. -....+ ...-.+++++. --|+.++....|+-++++.|+.+..+. ..+.++++. +
T Consensus 122 ak~-G~------------hy~~RI---P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~ 185 (703)
T KOG2321|consen 122 AKY-GR------------HYRTRI---PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE 185 (703)
T ss_pred hhc-Ce------------eeeeec---CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC
Confidence 211 10 000000 11123344421 224455555679999999999998887 446666666 6
Q ss_pred CCCEEEEEc-CCeEEEEECCCCeeeEEeec-----cccc-----ceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccc
Q 009993 285 HDTTVASTS-GSDVYIWDTNSGCLLTVVNG-----AHVG-----NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN 353 (520)
Q Consensus 285 ~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~-----~~~~-----~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~ 353 (520)
...+|++|+ +|.|-.||.+....+..+.. .|.+ .|+++.|+.+|-.+++|..+|.+.|||++...+
T Consensus 186 ~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--- 262 (703)
T KOG2321|consen 186 EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--- 262 (703)
T ss_pred ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc---
Confidence 777888888 99999999998877666542 1333 399999999999999999999999999999842
Q ss_pred eeeeeeecCCcCCEEEEEecC----CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEE
Q 009993 354 VLLVATWIPHTGPVNSLAFEF----PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSV 429 (520)
Q Consensus 354 ~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 429 (520)
.+..-.+..-+|..+.|.+ +.+++. ....++|||-.++.... .+-..+...-.|+
T Consensus 263 --l~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~a------------------siEpt~~lND~C~ 321 (703)
T KOG2321|consen 263 --LLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMA------------------SIEPTSDLNDFCF 321 (703)
T ss_pred --eeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCcee------------------eccccCCcCceee
Confidence 2222223355888899943 344444 45679999988753221 1112233455677
Q ss_pred EecCCEEEEecCCCeEEEEeCCch
Q 009993 430 DIGADRIVCGGEEGIVRIWNFSQA 453 (520)
Q Consensus 430 ~~~~~~l~sg~~Dg~v~iwd~~~~ 453 (520)
-+++..+++|-+++.+..|=+..-
T Consensus 322 ~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 322 VPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred ecCCceEEEecCCCcceeEEcccc
Confidence 777789999999998888876643
No 218
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.45 E-value=6.5e-11 Score=103.67 Aligned_cols=234 Identities=11% Similarity=0.198 Sum_probs=158.4
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEE-EEecC------CeEE
Q 009993 188 RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIY-SGSWD------MTVR 260 (520)
Q Consensus 188 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~-s~s~d------g~v~ 260 (520)
.++..|..-+++|..+| .++|+.+--.. .....+..-.-.+.-+-|-.++++ .|+.+ ..|.
T Consensus 11 vs~NQD~ScFava~~~G-friyn~~P~ke-----------~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkvi 78 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTG-FRIYNCDPFKE-----------SASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVI 78 (346)
T ss_pred EEEccCCceEEEEecCc-eEEEecCchhh-----------hhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEE
Confidence 45556777777777666 78888643110 001111111123334444455544 34333 4799
Q ss_pred EEECCCCcEEEEeeeccCEEEEeeCCCEEEEEcCCeEEEEECC-CCeeeEEeeccc-ccceEEEEecCCCCEEEE-EeCC
Q 009993 261 VWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTN-SGCLLTVVNGAH-VGNTKSLARSHTGDFLFT-GGED 337 (520)
Q Consensus 261 iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~iwd~~-~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~t-g~~d 337 (520)
|||-...+++.++....+|.++......+++.-.+.|+||... +.+.+..+.... .....+++-+.+..+||. |-.-
T Consensus 79 IWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 79 IWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred EEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence 9998888899999999999999999999999999999999987 455666555322 233444443334445554 5567
Q ss_pred CeEEEEEcccCccccceeeeeeecCCcCCEEEEEec--CCEEEEEeCCCc-EEEEeCCcccccCCCCCCCceeeeeecCC
Q 009993 338 GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGK-LSLIDVRKLLRSGRPTSGKRVSRVIEVEP 414 (520)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 414 (520)
|.|.|-|+...... ......+|.+.|.|++.+ +..+||+|..|+ |+|||..++........+.
T Consensus 159 GqvQi~dL~~~~~~----~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~---------- 224 (346)
T KOG2111|consen 159 GQVQIVDLASTKPN----APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV---------- 224 (346)
T ss_pred ceEEEEEhhhcCcC----CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC----------
Confidence 99999999877321 245677999999999995 579999999998 7999999874443222111
Q ss_pred CcccccCcceeeEEEEecCC--EEEEecCCCeEEEEeCCchH
Q 009993 415 PQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAF 454 (520)
Q Consensus 415 ~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~~~ 454 (520)
....+.+++++++ +|+++|+-|+|+|+.+....
T Consensus 225 -------d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 225 -------DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred -------chheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 2234566666554 99999999999999998644
No 219
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.45 E-value=7.3e-11 Score=115.24 Aligned_cols=264 Identities=13% Similarity=0.050 Sum_probs=169.9
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEE
Q 009993 153 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR 232 (520)
Q Consensus 153 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 232 (520)
.+..+++++.+|.|..+|..+|+.+...............++..++.++.+|.+..+|..+|+.. +.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~-W~------------ 130 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKEL-WR------------ 130 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEe-ee------------
Confidence 36788899999999999999999887765443322233356788889999999999999887531 11
Q ss_pred eccCCCCeE-EEEEcCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEE-------EeeCCCEEEEEc-CCeEEEEECC
Q 009993 233 LWEHEGPIT-SLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYG-------LAPHDTTVASTS-GSDVYIWDTN 303 (520)
Q Consensus 233 ~~~h~~~v~-~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~-------~~~~~~~l~~~~-d~~i~iwd~~ 303 (520)
.. ..+.+. .....++.++.++.++.+..||.++++.+........... +..+ ..++.+. ++.+..+|++
T Consensus 131 ~~-~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~-~~v~~~~~~g~v~ald~~ 208 (377)
T TIGR03300 131 AK-LSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIAD-GGVLVGFAGGKLVALDLQ 208 (377)
T ss_pred ec-cCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEEC-CEEEEECCCCEEEEEEcc
Confidence 10 011121 1223567788888899999999999998877763322211 1133 4556666 7999999999
Q ss_pred CCeeeEEeeccccc---c---eEEEEecC--CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCC
Q 009993 304 SGCLLTVVNGAHVG---N---TKSLARSH--TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP 375 (520)
Q Consensus 304 ~~~~~~~~~~~~~~---~---i~~l~~s~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 375 (520)
+|+.+......... . ...+.-+| .+..+++++.+|.++.||..+++ .+..... .........+.
T Consensus 209 tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~------~~W~~~~--~~~~~p~~~~~ 280 (377)
T TIGR03300 209 TGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR------VLWKRDA--SSYQGPAVDDN 280 (377)
T ss_pred CCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc------EEEeecc--CCccCceEeCC
Confidence 99877654321110 0 00111111 35678888899999999998883 3333221 12233445678
Q ss_pred EEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHh
Q 009993 376 WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFE 455 (520)
Q Consensus 376 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~ 455 (520)
.++.++.||.|..+|..++....... . +.+. ...+....++.|++++.||.|+++|..+++.
T Consensus 281 ~vyv~~~~G~l~~~d~~tG~~~W~~~------------~----~~~~--~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 281 RLYVTDADGVVVALDRRSGSELWKND------------E----LKYR--QLTAPAVVGGYLVVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred EEEEECCCCeEEEEECCCCcEEEccc------------c----ccCC--ccccCEEECCEEEEEeCCCEEEEEECCCCCE
Confidence 88899999999999998763321110 0 0000 0111122467899999999999999988765
Q ss_pred HH
Q 009993 456 IE 457 (520)
Q Consensus 456 ~~ 457 (520)
+.
T Consensus 343 ~~ 344 (377)
T TIGR03300 343 VA 344 (377)
T ss_pred EE
Confidence 43
No 220
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.45 E-value=1.3e-12 Score=121.57 Aligned_cols=183 Identities=19% Similarity=0.231 Sum_probs=137.7
Q ss_pred HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009993 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR 210 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd 210 (520)
.+-+...+|.++|.|-.|+|||.-|+|++.||.|++|.- +|-...++.....+|.|.. |+.+.++-+.. +.+.+=.
T Consensus 95 rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKp 172 (737)
T KOG1524|consen 95 RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKP 172 (737)
T ss_pred hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEee
Confidence 446677899999999999999999999999999999994 4544444445556676665 77665554433 3444433
Q ss_pred cccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCC
Q 009993 211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHD 286 (520)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~ 286 (520)
+ ...........|.+-|.++.| ..+.+++|+.|-..++||.........-.|..+|++++ |+
T Consensus 173 L-------------~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd- 238 (737)
T KOG1524|consen 173 L-------------AANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE- 238 (737)
T ss_pred c-------------ccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-
Confidence 2 223466778899999999999 45889999999999999986444444444999999999 55
Q ss_pred CEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEE
Q 009993 287 TTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY 343 (520)
Q Consensus 287 ~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iw 343 (520)
..++.++-++++ +.....+.|..++|++||..+++|+..|.+.+=
T Consensus 239 ~~~~v~S~nt~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 239 KDYLLWSYNTAR------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred cceeeeeeeeee------------ecCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 666666656555 333567889999999999999999999987553
No 221
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.44 E-value=3.7e-11 Score=105.21 Aligned_cols=198 Identities=17% Similarity=0.173 Sum_probs=151.4
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEEC
Q 009993 187 IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDR 264 (520)
Q Consensus 187 v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~ 264 (520)
..++..+...++.+.....|.||..... .......++..|...|+.++| ..+.|++|+.|..-++|..
T Consensus 15 chAwn~drt~iAv~~~~~evhiy~~~~~----------~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 15 CHAWNSDRTQIAVSPNNHEVHIYSMLGA----------DLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred eeeecCCCceEEeccCCceEEEEEecCC----------CCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 3455589999999999999999987554 235577888999999999999 5578999999999999998
Q ss_pred C-CCcE---EEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeee---EEeecccccceEEEEecCCCCEEEEE
Q 009993 265 A-LLKC---LKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLL---TVVNGAHVGNTKSLARSHTGDFLFTG 334 (520)
Q Consensus 265 ~-~~~~---~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~---~~~~~~~~~~i~~l~~s~~~~~l~tg 334 (520)
. .++- +..+++....+++. |.++.+++|+ ...|.||-.+....- +.+...+.+.|+++.|+|++-++++|
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 4 3332 22335888888887 9999999999 677888877654332 11223577889999999999999999
Q ss_pred eCCCeEEEEEcccCccccc------------eeeeeeecCCcCCEEEEEec--CCEEEEEeCCCcEEEEeCCcc
Q 009993 335 GEDGAIHMYEIINDCTEAN------------VLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~------------~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~ 394 (520)
+.|+..++|..--...... ...+..+....+.|..+.|+ +..|+-.+.|+.+.+=|...+
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 9999999997532111000 01233344566789999997 589999999999999998765
No 222
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.41 E-value=5.2e-10 Score=107.05 Aligned_cols=294 Identities=13% Similarity=0.097 Sum_probs=171.8
Q ss_pred CEE-EEEeCCCeEEEEECCCCcEEEEeCCCCce--EEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceE
Q 009993 155 KLL-FTSGYDSIVRMWHLEDGFSIASSKPLGCT--IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQF 231 (520)
Q Consensus 155 ~~l-~sgs~dg~v~vwd~~~~~~~~~~~~~~~~--v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 231 (520)
+++ ++-..++.|.|.|..+.+.+..+...... ...+++|++++++++.||.|.++|+.+.+ ...
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~-------------~v~ 72 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK-------------VVA 72 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS-------------EEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc-------------EEE
Confidence 344 45567899999999999999998754332 24566999999999999999999998763 333
Q ss_pred EeccCCCCeEEEEE--cCCEEEEEe-cCCeEEEEECCCCcEEEEeee--------ccCEEEEe--eCCCEEEEEc-C-Ce
Q 009993 232 RLWEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDRALLKCLKVLRH--------SDWVYGLA--PHDTTVASTS-G-SD 296 (520)
Q Consensus 232 ~~~~h~~~v~~l~~--~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~--------~~~v~~~~--~~~~~l~~~~-d-~~ 296 (520)
++.. .....++++ ||++++++. .++.+.++|.++.+.++.+.. ...+.++. +....++..- + +.
T Consensus 73 ~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~ 151 (369)
T PF02239_consen 73 TIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGE 151 (369)
T ss_dssp EEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTE
T ss_pred EEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCe
Confidence 3332 334556777 889887665 689999999999999998862 23556664 5556455444 4 88
Q ss_pred EEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEE-eCCCeEEEEEcccCccccceeeeeee----cCCcCCEEEEE
Q 009993 297 VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTG-GEDGAIHMYEIINDCTEANVLLVATW----IPHTGPVNSLA 371 (520)
Q Consensus 297 i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~~----~~h~~~v~~l~ 371 (520)
|.+.|......+..-............|+|++++++++ ..+..|-++|..+.. .+..+ ..|..++..+-
T Consensus 152 I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k------~v~~i~~g~~p~~~~~~~~p 225 (369)
T PF02239_consen 152 IWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK------LVALIDTGKKPHPGPGANFP 225 (369)
T ss_dssp EEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE------EEEEEE-SSSBEETTEEEEE
T ss_pred EEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccce------EEEEeecccccccccccccc
Confidence 99999877654432221244567788999999987664 557789999988873 22222 23444444332
Q ss_pred -----------ecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCccee-eEEEEecCCEEEEe
Q 009993 372 -----------FEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECN-LLSVDIGADRIVCG 439 (520)
Q Consensus 372 -----------~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~l~sg 439 (520)
-.....++.-....+.+||..+... .+.+...... -...+|++.++.+.
T Consensus 226 hp~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv-------------------v~~I~~~G~glFi~thP~s~~vwvd 286 (369)
T PF02239_consen 226 HPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV-------------------VKTIPTQGGGLFIKTHPDSRYVWVD 286 (369)
T ss_dssp ETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSE-------------------EEEEE-SSSS--EE--TT-SEEEEE
T ss_pred CCCcceEEeeccccceecccccCCccccchhhcCeE-------------------EEEEECCCCcceeecCCCCccEEee
Confidence 1122222222223445566555311 1111211222 22446677777776
Q ss_pred ----cCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccccccc
Q 009993 440 ----GEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAK 496 (520)
Q Consensus 440 ----~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~~~ 496 (520)
...+.|.++|.++.+.+.... ....++...++|++||+.+-.+..+..
T Consensus 287 ~~~~~~~~~v~viD~~tl~~~~~i~---------~~~~~~~~h~ef~~dG~~v~vS~~~~~ 338 (369)
T PF02239_consen 287 TFLNPDADTVQVIDKKTLKVVKTIT---------PGPGKRVVHMEFNPDGKEVWVSVWDGN 338 (369)
T ss_dssp -TT-SSHT-EEEEECCGTEEEE-HH---------HHHT--EEEEEE-TTSSEEEEEEE--T
T ss_pred ccCCCCCceEEEEECcCcceeEEEe---------ccCCCcEeccEECCCCCEEEEEEecCC
Confidence 556899999999874433322 111223678999999998887766544
No 223
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=3.1e-10 Score=101.07 Aligned_cols=245 Identities=19% Similarity=0.244 Sum_probs=154.8
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC-CCCceEEEEe--cC-CCEEEEEeCCCcEEEEEcccCccee
Q 009993 143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK-PLGCTIRAVA--AD-KKLLVAGGTDGFIHCWRAVEVLPHL 218 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~--~~-~~~l~sg~~dg~i~vwd~~~~~~~~ 218 (520)
-.+..++|++.-.-++++..|-.|++||-.. .+...++ .....|.++. |. +..|+.|+..| |.+|.........
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 4577889988766788999999999999766 3333333 2334455555 54 45677777654 8899864322111
Q ss_pred eec-cCCccccceEEeccCCCCeEEEEE--cCCEEEEEec-CCeEEEEECCCCcEEEEee-eccCE--EEEeeCCCEEEE
Q 009993 219 FDI-SGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DMTVRVWDRALLKCLKVLR-HSDWV--YGLAPHDTTVAS 291 (520)
Q Consensus 219 ~~~-~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~-~~~~v--~~~~~~~~~l~~ 291 (520)
... ..+.....+....+| .+|++|.| |+..+++++. |..|.|||..++..+.... ..+.+ .-.+|++.++++
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 100 112223345555667 78999999 7788888875 5689999999998877664 33344 344599999999
Q ss_pred Ec-CCeEEEEECCCC-eeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcccc---------ceeeeeee
Q 009993 292 TS-GSDVYIWDTNSG-CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA---------NVLLVATW 360 (520)
Q Consensus 292 ~~-d~~i~iwd~~~~-~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~---------~~~~~~~~ 360 (520)
+. |+..++|+.... ...+-.. -.+.|...+|+|+|.+|+-... |.-++|.+.-.+... ...++..+
T Consensus 256 At~davfrlw~e~q~wt~erw~l--gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL 332 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWIL--GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADL 332 (445)
T ss_pred ecccceeeeehhcccceecceec--cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccc
Confidence 99 999999965543 3332222 3458999999999997664432 233455543221110 11111111
Q ss_pred c------C---CcCCEEEEEecC--CEEEEEeCCC--------cEEEEeCCc
Q 009993 361 I------P---HTGPVNSLAFEF--PWLVSAAGDG--------KLSLIDVRK 393 (520)
Q Consensus 361 ~------~---h~~~v~~l~~~~--~~l~s~s~dg--------~i~vwd~~~ 393 (520)
. + -.+.+.+++|+| .+|++.-..+ .|.+||.+.
T Consensus 333 ~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 333 QEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred hhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence 1 1 146788999987 6888776543 366777665
No 224
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=1.5e-10 Score=114.15 Aligned_cols=215 Identities=12% Similarity=0.014 Sum_probs=142.2
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeC---CCeEEEEECCCCcEE--EEeCCCCceEEEEecCCCEEEEE-eCCC--cE
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGY---DSIVRMWHLEDGFSI--ASSKPLGCTIRAVAADKKLLVAG-GTDG--FI 206 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~---dg~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~l~sg-~~dg--~i 206 (520)
.+.+..+...+.+.+|+|||+.|+..+. +..|.+|++.+++.. ..+.++.. ...++|||+.|+.. +.+| .|
T Consensus 191 ~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~-~~~~SPDG~~La~~~~~~g~~~I 269 (429)
T PRK03629 191 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNL 269 (429)
T ss_pred CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC-CeEECCCCCEEEEEEcCCCCcEE
Confidence 3445567778999999999998886543 457999999888543 33444433 35788999988764 4455 48
Q ss_pred EEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecC-C--eEEEEECCCCcEEEEeeeccCE--
Q 009993 207 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD-M--TVRVWDRALLKCLKVLRHSDWV-- 279 (520)
Q Consensus 207 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d-g--~v~iwd~~~~~~~~~~~~~~~v-- 279 (520)
.+||+.++. ...+..+...+....| +++.|+..+.+ + .|.++|+.+++...........
T Consensus 270 ~~~d~~tg~--------------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~ 335 (429)
T PRK03629 270 YVMDLASGQ--------------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQD 335 (429)
T ss_pred EEEECCCCC--------------EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccC
Confidence 888987653 2233334445667788 77878766654 4 4555577766543332222222
Q ss_pred EEEeeCCCEEEEEc-C---CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCe---EEEEEcccCcccc
Q 009993 280 YGLAPHDTTVASTS-G---SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA---IHMYEIINDCTEA 352 (520)
Q Consensus 280 ~~~~~~~~~l~~~~-d---~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~---i~iwd~~~~~~~~ 352 (520)
..++|+|+.++... + ..|.+||+.++... .+... .......|+|||+.|+.++.++. +.++++...
T Consensus 336 ~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~---- 408 (429)
T PRK03629 336 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR---- 408 (429)
T ss_pred EEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC----
Confidence 44569999887765 3 35889999888643 33222 22346789999999998888764 666776443
Q ss_pred ceeeeeeecCCcCCEEEEEecC
Q 009993 353 NVLLVATWIPHTGPVNSLAFEF 374 (520)
Q Consensus 353 ~~~~~~~~~~h~~~v~~l~~~~ 374 (520)
....+.+|.+.+...+|+|
T Consensus 409 ---~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 409 ---FKARLPATDGQVKFPAWSP 427 (429)
T ss_pred ---CeEECccCCCCcCCcccCC
Confidence 3455667888888888876
No 225
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=5.8e-11 Score=117.43 Aligned_cols=202 Identities=11% Similarity=0.006 Sum_probs=127.4
Q ss_pred CCeEEEEECCCCcEEEEeCCCCceEE--EEecCCCEEEEEeCC---CcEEEEEcccCcceeeeccCCccccceEEeccCC
Q 009993 163 DSIVRMWHLEDGFSIASSKPLGCTIR--AVAADKKLLVAGGTD---GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE 237 (520)
Q Consensus 163 dg~v~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~ 237 (520)
+..|.+||..... ...+..+...+. .++|+|+.|+..+.+ ..|++||+.++... ....+.+|.
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-----------~l~~~~g~~ 250 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-----------VVASFRGHN 250 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-----------EEecCCCcc
Confidence 5789999986554 445555555454 566999999887754 36999999776321 122233333
Q ss_pred CCeEEEEE--cCCEEEEEe-cCCeEEEE--ECCCCcEEEEeeeccCEE--EEeeCCCEEEEEc--CCeEEEEECCCC-ee
Q 009993 238 GPITSLAL--DLTRIYSGS-WDMTVRVW--DRALLKCLKVLRHSDWVY--GLAPHDTTVASTS--GSDVYIWDTNSG-CL 307 (520)
Q Consensus 238 ~~v~~l~~--~~~~l~s~s-~dg~v~iw--d~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~--d~~i~iwd~~~~-~~ 307 (520)
..++| |++.|+.++ .+|.+.+| |+.+++......+...+. .++|+++.++.++ ++...||++... ..
T Consensus 251 ---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~ 327 (429)
T PRK01742 251 ---GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG 327 (429)
T ss_pred ---CceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 34677 777777664 67765555 666666544333443343 3458999777655 577788876432 22
Q ss_pred eEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCc
Q 009993 308 LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGK 385 (520)
Q Consensus 308 ~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~ 385 (520)
...+ .+.+ ....|+|+|+.|+.++.++ +.+||+.++. .......+ ....+.|+| .+|+.++.++.
T Consensus 328 ~~~l--~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~------~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~ 394 (429)
T PRK01742 328 ASLV--GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGS------TEVLSSTF--LDESPSISPNGIMIIYSSTQGL 394 (429)
T ss_pred eEEe--cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCC------eEEecCCC--CCCCceECCCCCEEEEEEcCCC
Confidence 2222 2333 4578999999998887765 5569998773 21111111 224566765 68999999999
Q ss_pred EEEEeCC
Q 009993 386 LSLIDVR 392 (520)
Q Consensus 386 i~vwd~~ 392 (520)
+.+|++.
T Consensus 395 ~~~l~~~ 401 (429)
T PRK01742 395 GKVLQLV 401 (429)
T ss_pred ceEEEEE
Confidence 9888864
No 226
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.35 E-value=9.4e-10 Score=107.44 Aligned_cols=258 Identities=15% Similarity=0.038 Sum_probs=157.8
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEE
Q 009993 153 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR 232 (520)
Q Consensus 153 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 232 (520)
++..++.++.|+.+..+|..+|+.+................+..++.++.+|.+..||..++... +...... ....
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~-W~~~~~~---~~~~ 179 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERL-WTYSRVT---PALT 179 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCcee-eEEccCC---Ccee
Confidence 46778888999999999999999887665332211111124567788888999999999887521 1111000 0000
Q ss_pred eccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEeeeccC-----------E-EEEeeCCCEEEEEc-CCeEEE
Q 009993 233 LWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDW-----------V-YGLAPHDTTVASTS-GSDVYI 299 (520)
Q Consensus 233 ~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-----------v-~~~~~~~~~l~~~~-d~~i~i 299 (520)
..... +....++.++.+..++.+..+|.++++.+........ + .+....+..+++++ ++.++.
T Consensus 180 ~~~~~----sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a 255 (377)
T TIGR03300 180 LRGSA----SPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAA 255 (377)
T ss_pred ecCCC----CCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEE
Confidence 10111 1123346788888899999999999987765431100 0 01112344555555 999999
Q ss_pred EECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecC-CcCCEEEEEecCCEEE
Q 009993 300 WDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP-HTGPVNSLAFEFPWLV 378 (520)
Q Consensus 300 wd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~l~ 378 (520)
+|..+|+.+..... .. ..... ..+..+++++.||.++.+|..++. .+..... ......+....+..|+
T Consensus 256 ~d~~tG~~~W~~~~--~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~------~~W~~~~~~~~~~ssp~i~g~~l~ 324 (377)
T TIGR03300 256 LDLRSGRVLWKRDA--SS-YQGPA--VDDNRLYVTDADGVVVALDRRSGS------ELWKNDELKYRQLTAPAVVGGYLV 324 (377)
T ss_pred EECCCCcEEEeecc--CC-ccCce--EeCCEEEEECCCCeEEEEECCCCc------EEEccccccCCccccCEEECCEEE
Confidence 99999988776542 11 11222 246788888899999999998883 3332211 1112233334568999
Q ss_pred EEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcce-eeEEEEecCCEEEEecCCCeEEEE
Q 009993 379 SAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC-NLLSVDIGADRIVCGGEEGIVRIW 448 (520)
Q Consensus 379 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~l~sg~~Dg~v~iw 448 (520)
+++.+|.|.++|..++....+. ..+.. ........++.|+.++.||.|+.|
T Consensus 325 ~~~~~G~l~~~d~~tG~~~~~~-------------------~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 325 VGDFEGYLHWLSREDGSFVARL-------------------KTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred EEeCCCEEEEEECCCCCEEEEE-------------------EcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 9999999999998875332211 11110 111112335678899999998875
No 227
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.34 E-value=9e-10 Score=105.43 Aligned_cols=286 Identities=13% Similarity=0.113 Sum_probs=161.7
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCC-CCceEEEEecCCCEEEEEe-CCCcEEEEEcc
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP-LGCTIRAVAADKKLLVAGG-TDGFIHCWRAV 212 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sg~-~dg~i~vwd~~ 212 (520)
+..+......-..+.|+|||+++++++.||.|.++|+.+++.+++++. ....-.+++++|++++++. .++.+.++|.+
T Consensus 29 ~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~ 108 (369)
T PF02239_consen 29 VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAE 108 (369)
T ss_dssp EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETT
T ss_pred EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccc
Confidence 444544433334577999999999999999999999999999988864 3444567779999988776 57999999987
Q ss_pred cCcceeeeccCCccccceEEecc-------CCCCeEEEEE--cCC-EEEEEecCCeEEEEECCCCcEE--EEeeeccCEE
Q 009993 213 EVLPHLFDISGSEKQNTQFRLWE-------HEGPITSLAL--DLT-RIYSGSWDMTVRVWDRALLKCL--KVLRHSDWVY 280 (520)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~--~~~-~l~s~s~dg~v~iwd~~~~~~~--~~~~~~~~v~ 280 (520)
+.+. ...+.. ....+..+.. ... ++++.-.-+.|.+.|....+.+ ..+.......
T Consensus 109 tle~-------------v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~ 175 (369)
T PF02239_consen 109 TLEP-------------VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPH 175 (369)
T ss_dssp T--E-------------EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEE
T ss_pred cccc-------------eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccccccc
Confidence 7542 222211 2345666655 334 4444445588888887765433 2333333333
Q ss_pred --EEeeCCCEEEEEc--CCeEEEEECCCCeeeEEeec---ccccceEEEEecCCCCEEE-EEe---------CCCeEEEE
Q 009993 281 --GLAPHDTTVASTS--GSDVYIWDTNSGCLLTVVNG---AHVGNTKSLARSHTGDFLF-TGG---------EDGAIHMY 343 (520)
Q Consensus 281 --~~~~~~~~l~~~~--d~~i~iwd~~~~~~~~~~~~---~~~~~i~~l~~s~~~~~l~-tg~---------~dg~i~iw 343 (520)
.+.+++++++++. ++.|-++|.++++.+..+.. .|..+...+ .+|....+. +++ ....+.+|
T Consensus 176 D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~ 254 (369)
T PF02239_consen 176 DGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVH 254 (369)
T ss_dssp EEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-S
T ss_pred ccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccc
Confidence 3448899887765 68999999999988776643 355555444 234332222 221 11233345
Q ss_pred EcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEE----eCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcc
Q 009993 344 EIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSA----AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQR 417 (520)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~----s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (520)
|.... +.+.++....++ .-+..+| +++.+. ...++|.++|..+...... ..
T Consensus 255 d~~~w------kvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~----------------i~ 311 (369)
T PF02239_consen 255 DDYAW------KVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKT----------------IT 311 (369)
T ss_dssp TTTBT------SEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-----------------HH
T ss_pred hhhcC------eEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEE----------------Ee
Confidence 55554 667777766656 5666666 577776 4458999999998521110 00
Q ss_pred cccCcceeeEEEEecCC--EEEEecCCCeEEEEeCCchHhHH
Q 009993 418 MLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIE 457 (520)
Q Consensus 418 ~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~~~~~~ 457 (520)
...+....-..+..+|+ ++..-..+|.|.+||..+.+++.
T Consensus 312 ~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 312 PGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp HHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred ccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence 01111122334445555 44444445589999999876543
No 228
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.33 E-value=3.5e-10 Score=100.15 Aligned_cols=291 Identities=12% Similarity=0.147 Sum_probs=165.5
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc-----EEEEeCCCCc------------eEEEE---e-cCCCEEEE
Q 009993 141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF-----SIASSKPLGC------------TIRAV---A-ADKKLLVA 199 (520)
Q Consensus 141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~-----~~~~~~~~~~------------~v~~~---~-~~~~~l~s 199 (520)
-.+-|.++.|...|.+|+||..+|.|.++.-+... ....++.|.. .|..+ . .+...++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 34678999999999999999999999999754322 2233444432 12222 2 34456778
Q ss_pred EeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee--ecc
Q 009993 200 GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSD 277 (520)
Q Consensus 200 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~ 277 (520)
.+.|.+|++|.+....... ........+..+.|+++.. .+.+..|-.+. ..+.+.+. |.-
T Consensus 104 stNdktiKlWKi~er~~k~--------~~~~~~~~~~~~~~~~lr~----p~~~~~~~~ve------a~prRv~aNaHty 165 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKK--------EGYNLPEEGPPGTITSLRL----PVEGRHDLEVE------ASPRRVYANAHTY 165 (433)
T ss_pred ecCCcceeeeeeecccccc--------ccccccccCCCCccceeec----eeeccccceee------eeeeeecccccee
Confidence 8899999999986643211 0000011112233333332 11111111110 11223333 777
Q ss_pred CEEEEe--eCCCEEEEEcCCeEEEEECCCCee---eEEeec----ccccceEEEEecCCC-CEEEEEeCCCeEEEEEccc
Q 009993 278 WVYGLA--PHDTTVASTSGSDVYIWDTNSGCL---LTVVNG----AHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIIN 347 (520)
Q Consensus 278 ~v~~~~--~~~~~l~~~~d~~i~iwd~~~~~~---~~~~~~----~~~~~i~~l~~s~~~-~~l~tg~~dg~i~iwd~~~ 347 (520)
.|++++ .|...++++.|=.|.+|+++--.. +..++. .-..-|++..|+|.. +.++-.+..|+|++-|++.
T Consensus 166 hiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 166 HINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred EeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence 788888 778889998899999999874322 222221 113457888999954 6777788999999999985
Q ss_pred Cccc----------cceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCce--eeeeecC
Q 009993 348 DCTE----------ANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRV--SRVIEVE 413 (520)
Q Consensus 348 ~~~~----------~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~ 413 (520)
...- ..+....-+..--..|..+.|+. +++++-.. -+|++||+.....+.....-... ..+-.+.
T Consensus 246 ~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lY 324 (433)
T KOG1354|consen 246 SALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLY 324 (433)
T ss_pred hhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHh
Confidence 4210 01111111222335688899954 67766543 58999999764322111000000 0000000
Q ss_pred CCcccccCcceeeEEEEecCC--EEEEecCCCeEEEEeCCchHh
Q 009993 414 PPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFE 455 (520)
Q Consensus 414 ~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~~~~ 455 (520)
....+ ..-+.++++|+ +++||+....+++++...|..
T Consensus 325 EnD~I-----fdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 325 ENDAI-----FDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred hccch-----hheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence 00001 11234556665 999999999999999766544
No 229
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.32 E-value=3.6e-10 Score=113.88 Aligned_cols=192 Identities=19% Similarity=0.229 Sum_probs=150.1
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCce------EEEEecCCCEEEEEeCCCcEEEEEcccCcc
Q 009993 143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT------IRAVAADKKLLVAGGTDGFIHCWRAVEVLP 216 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~------v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~ 216 (520)
+.|....+.-+...++.+..+..+.+||...+............ +...+++.-++++|+.-+.|.+|+....
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d-- 165 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED-- 165 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc--
Confidence 33444555567788999999999999999877666555433221 1222367779999999999999997632
Q ss_pred eeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEE--EeeeccCEEEEeeCCCEEEEE
Q 009993 217 HLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLK--VLRHSDWVYGLAPHDTTVAST 292 (520)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~ 292 (520)
.....+.+|.+.|.++.+ ||.++++.|.|.++++|++++.+... .+.|+..|..+...++.++++
T Consensus 166 -----------n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~ 234 (967)
T KOG0974|consen 166 -----------NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITV 234 (967)
T ss_pred -----------CCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEe
Confidence 122268899999999999 99999999999999999999988766 355999999888655588888
Q ss_pred c-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993 293 S-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND 348 (520)
Q Consensus 293 ~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~ 348 (520)
+ |-+.++|+.+. ..+..+.......+..++..++...++|++.||.+++||+...
T Consensus 235 gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 235 GEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ccceEEEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 8 99999996554 4444665333558999999999999999999999999998765
No 230
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=5.6e-10 Score=110.65 Aligned_cols=215 Identities=14% Similarity=0.113 Sum_probs=138.8
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCC---CeEEEEECCCCcEEEE--eCCCCceEEEEecCCCEEE-EEeCCC--cE
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYD---SIVRMWHLEDGFSIAS--SKPLGCTIRAVAADKKLLV-AGGTDG--FI 206 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~d---g~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~-sg~~dg--~i 206 (520)
.+.+..|...+.+.+|+|||+.|+.++.+ ..|.+||+.+++.... +.++ .....++|+|+.|+ +.+.+| .|
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~-~~~~~~SpDG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGI-NGAPSFSPDGRRLALTLSRDGNPEI 274 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCC-ccCceECCCCCEEEEEEeCCCCceE
Confidence 45566778889999999999999987743 4699999988765332 2222 22346789998775 455555 58
Q ss_pred EEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec-CCe--EEEEECCCCcEEEEeeeccCE--
Q 009993 207 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DMT--VRVWDRALLKCLKVLRHSDWV-- 279 (520)
Q Consensus 207 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg~--v~iwd~~~~~~~~~~~~~~~v-- 279 (520)
.+||+.++. ...+..+.......+| +++.++.++. +|. |.++|+.+++...........
T Consensus 275 y~~d~~~g~--------------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~ 340 (433)
T PRK04922 275 YVMDLGSRQ--------------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNAR 340 (433)
T ss_pred EEEECCCCC--------------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccC
Confidence 889987653 2233344444556777 7787776664 444 667777776644332222222
Q ss_pred EEEeeCCCEEEEEc-C-C--eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCC---CeEEEEEcccCcccc
Q 009993 280 YGLAPHDTTVASTS-G-S--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED---GAIHMYEIINDCTEA 352 (520)
Q Consensus 280 ~~~~~~~~~l~~~~-d-~--~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d---g~i~iwd~~~~~~~~ 352 (520)
.+++|+++.++..+ + + .|.+||+.+++.. .+. +........|+|+|+.++..+.+ +.|.++++...
T Consensus 341 ~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~---- 413 (433)
T PRK04922 341 ASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR---- 413 (433)
T ss_pred EEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----
Confidence 35669999988765 3 2 5999999887654 332 22234567899999988776653 35777777543
Q ss_pred ceeeeeeecCCcCCEEEEEecC
Q 009993 353 NVLLVATWIPHTGPVNSLAFEF 374 (520)
Q Consensus 353 ~~~~~~~~~~h~~~v~~l~~~~ 374 (520)
....+..+.+.+...+|+|
T Consensus 414 ---~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 414 ---VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ---ceEEcccCCCCCCCCccCC
Confidence 2333444455666666665
No 231
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.29 E-value=6.1e-10 Score=105.70 Aligned_cols=205 Identities=18% Similarity=0.168 Sum_probs=149.5
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceE
Q 009993 152 ASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQF 231 (520)
Q Consensus 152 ~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 231 (520)
|...++|....||.+++|+..+++....+.+.. ..+..++-..|.+.-+.. .. ...
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~--------------~~s~t~~~~~w~L~~~~s---------~~-k~~ 58 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA--------------SLSGTCTYTKWGLSADYS---------PM-KWL 58 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccch--------------hccCcceeEEEEEEeccc---------hH-HHH
Confidence 456789999999999999999988776665321 112223333454321110 00 000
Q ss_pred EeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee---eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCC
Q 009993 232 RLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSG 305 (520)
Q Consensus 232 ~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~ 305 (520)
. ...+...+-+...++-|...|.|.+|+...++....+. |.+.|+++. .+-..|.+++ |..+..|+...+
T Consensus 59 ~----~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~ 134 (541)
T KOG4547|consen 59 S----LEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK 134 (541)
T ss_pred h----HHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc
Confidence 0 01111122244568888999999999999999988886 889999987 4455677777 899999999999
Q ss_pred eeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe--c-----CCE-E
Q 009993 306 CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--E-----FPW-L 377 (520)
Q Consensus 306 ~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~-----~~~-l 377 (520)
..+..+. .....+.+++.+|||..+++++ +.|++||+++. +.+.++.+|.++|++++| + +.+ |
T Consensus 135 ~~~~~~~-~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~k------evv~~ftgh~s~v~t~~f~~~~~g~~G~~vL 205 (541)
T KOG4547|consen 135 VIIRIWK-EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETK------EVVITFTGHGSPVRTLSFTTLIDGIIGKYVL 205 (541)
T ss_pred eeeeeec-cCCCccceEEEcCCCCEEEecc--ceEEEEEccCc------eEEEEecCCCcceEEEEEEEeccccccceee
Confidence 9988887 4677899999999999999885 67999999999 899999999999999999 2 244 4
Q ss_pred EEEeCCCcEEEEeCCc
Q 009993 378 VSAAGDGKLSLIDVRK 393 (520)
Q Consensus 378 ~s~s~dg~i~vwd~~~ 393 (520)
.+...+.-+.+|-+..
T Consensus 206 ssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 206 SSAAAERGITVWVVEK 221 (541)
T ss_pred eccccccceeEEEEEc
Confidence 4555677788887765
No 232
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=1.3e-09 Score=107.78 Aligned_cols=216 Identities=15% Similarity=0.111 Sum_probs=135.2
Q ss_pred hhhccccccEEEEEEccCCCEEEEEeCC---CeEEEEECCCCcEEEE--eCCCCceEEEEecCCCEEE-EEeCCCcEEEE
Q 009993 136 DVLYGHTEAVLTVFVLASAKLLFTSGYD---SIVRMWHLEDGFSIAS--SKPLGCTIRAVAADKKLLV-AGGTDGFIHCW 209 (520)
Q Consensus 136 ~~l~~h~~~V~~l~~~~~~~~l~sgs~d---g~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~-sg~~dg~i~vw 209 (520)
+.+..+.+.+.+.+|+|||+.|+..+.+ ..|.+||+.+++.... +.++ .....++|+|+.|+ +.+.+|...+|
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~-~~~~~~SPDG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGS-NSAPAWSPDGRTLAVALSRDGNSQIY 267 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCC-ccceEECCCCCEEEEEEccCCCceEE
Confidence 4456778889999999999999877653 4599999998865432 2322 22346789999876 56778887777
Q ss_pred EcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec-CCeEEEEEC--CCCcEEEEeeecc--CEEEE
Q 009993 210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DMTVRVWDR--ALLKCLKVLRHSD--WVYGL 282 (520)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg~v~iwd~--~~~~~~~~~~~~~--~v~~~ 282 (520)
.+.... .....+..+.+.+....| ||+.++..+. +|...+|.+ .+++......... .-..+
T Consensus 268 ~~d~~~------------~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~ 335 (427)
T PRK02889 268 TVNADG------------SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRI 335 (427)
T ss_pred EEECCC------------CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEE
Confidence 653211 112334444445556677 7787776554 456666654 4544332222221 12356
Q ss_pred eeCCCEEEEEc-CC---eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCC---eEEEEEcccCcccccee
Q 009993 283 APHDTTVASTS-GS---DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG---AIHMYEIINDCTEANVL 355 (520)
Q Consensus 283 ~~~~~~l~~~~-d~---~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg---~i~iwd~~~~~~~~~~~ 355 (520)
+|+|++++..+ ++ .|.+||+.+++...... ........|+|+|+.|+.++.++ .+.+.++. + .
T Consensus 336 SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~---~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g------~ 405 (427)
T PRK02889 336 SPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD---TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G------R 405 (427)
T ss_pred CCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC---CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-C------C
Confidence 69999988766 33 59999998886543322 22346789999999888776544 25555553 2 2
Q ss_pred eeeeecCCcCCEEEEEecC
Q 009993 356 LVATWIPHTGPVNSLAFEF 374 (520)
Q Consensus 356 ~~~~~~~h~~~v~~l~~~~ 374 (520)
....+..+.+.+...+|+|
T Consensus 406 ~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 406 IKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred ceEEeecCCCCCCCCccCC
Confidence 3333444556667677765
No 233
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=1.2e-09 Score=97.48 Aligned_cols=231 Identities=18% Similarity=0.246 Sum_probs=145.3
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEe-ccCCCCeEEEEE---cCCEEEEEecCCeEEEEE
Q 009993 188 RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL-WEHEGPITSLAL---DLTRIYSGSWDMTVRVWD 263 (520)
Q Consensus 188 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd 263 (520)
.++.+.-..++++..|-.|++||-.... ...+ ......|+|++| .+..|+.|+.. -|.+|.
T Consensus 104 ~aWhqH~~~fava~nddvVriy~ksst~--------------pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~ 168 (445)
T KOG2139|consen 104 VAWHQHIIAFAVATNDDVVRIYDKSSTC--------------PTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWS 168 (445)
T ss_pred EeechhhhhhhhhccCcEEEEeccCCCC--------------CceecchhhcceeEEEeccCCcceeeeeecc-eeEEEE
Confidence 3444444567889999999999865432 1112 124568999999 45678888875 488997
Q ss_pred CCCC----c--------EEEEee--eccCEEEEe--eCCCEEEEEc--CCeEEEEECCCCeeeEEeecccccceEEEEec
Q 009993 264 RALL----K--------CLKVLR--HSDWVYGLA--PHDTTVASTS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARS 325 (520)
Q Consensus 264 ~~~~----~--------~~~~~~--~~~~v~~~~--~~~~~l~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s 325 (520)
.... . ....++ ...+|+++. ++|..+++++ +..|.|||+.++..+.... ...+.+.-+.||
T Consensus 169 ~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~-~glgg~slLkwS 247 (445)
T KOG2139|consen 169 DSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP-KGLGGFSLLKWS 247 (445)
T ss_pred cCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc-cCCCceeeEEEc
Confidence 5421 1 122233 336788887 8899999998 6889999999998766553 256778899999
Q ss_pred CCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--C-EEEEEeCCCcEEEEeCCcccccCCCC-
Q 009993 326 HTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P-WLVSAAGDGKLSLIDVRKLLRSGRPT- 401 (520)
Q Consensus 326 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~-~l~s~s~dg~i~vwd~~~~~~~~~~~- 401 (520)
|||++|+++.-|+..++|+.... .......-..+.|..-.|+| . .|++.+..-.+ |.+.-..+.....
T Consensus 248 Pdgd~lfaAt~davfrlw~e~q~------wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~l--ysl~f~~~~~~~~~ 319 (445)
T KOG2139|consen 248 PDGDVLFAATCDAVFRLWQENQS------WTKERWILGSGRVQTACWSPCGSFLLFACSGSPRL--YSLTFDGEDSVFLR 319 (445)
T ss_pred CCCCEEEEecccceeeeehhccc------ceecceeccCCceeeeeecCCCCEEEEEEcCCceE--EEEeecCCCccccC
Confidence 99999999999999999965544 12222223345899999987 3 55666555444 4433222221111
Q ss_pred --CCCceeeeeecCCC----cccccCcceeeEEEEecCCEEEEecCC
Q 009993 402 --SGKRVSRVIEVEPP----QRMLHGFECNLLSVDIGADRIVCGGEE 442 (520)
Q Consensus 402 --~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~l~sg~~D 442 (520)
..+....+.++... .+.+-+.....++++++|.+||+.-..
T Consensus 320 ~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 320 PQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred cccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 11111111111111 012234556677888888888875543
No 234
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=2.5e-11 Score=113.62 Aligned_cols=249 Identities=18% Similarity=0.234 Sum_probs=170.2
Q ss_pred EEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEE
Q 009993 177 IASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYS 252 (520)
Q Consensus 177 ~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s 252 (520)
+..+.+|...|.++. .+.+.+++++.|++|++|.++... .+.....+..++..|+.+|.++.| +-++++
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~Eg------D~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~- 800 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEG------DEIGTSACQFTYQAHKKPIHDIGFLADLRSIA- 800 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEecccc------CccccceeeeEhhhccCcccceeeeeccceee-
Confidence 456678988888876 677889999999999999986531 112234577889999999999999 444555
Q ss_pred EecCCeEEEEECCCCcEEEEee------eccCEEEEee-CCCEEEEE-c-CCeEEEEECCCCeeeEEee----cccccce
Q 009993 253 GSWDMTVRVWDRALLKCLKVLR------HSDWVYGLAP-HDTTVAST-S-GSDVYIWDTNSGCLLTVVN----GAHVGNT 319 (520)
Q Consensus 253 ~s~dg~v~iwd~~~~~~~~~~~------~~~~v~~~~~-~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~----~~~~~~i 319 (520)
+.||-|.+||.--++.+.... ..+.|.++.. +...+.++ + ..+|+++|.+.++-...+. .+....+
T Consensus 801 -ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~ 879 (1034)
T KOG4190|consen 801 -SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALT 879 (1034)
T ss_pred -eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhe
Confidence 457889999987776655432 2345666663 55555555 4 7999999999987655544 2345678
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe-cCCEEEEEeCCCcEEE-EeCCccccc
Q 009993 320 KSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF-EFPWLVSAAGDGKLSL-IDVRKLLRS 397 (520)
Q Consensus 320 ~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~v-wd~~~~~~~ 397 (520)
.+++..+.|++++++-.+|+|.+.|.+++ +.+..+.........++. +.+.|+....|.++.| |..-.+...
T Consensus 880 R~iaVa~~GN~lAa~LSnGci~~LDaR~G------~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh 953 (1034)
T KOG4190|consen 880 RAIAVADKGNKLAAALSNGCIAILDARNG------KVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMH 953 (1034)
T ss_pred eEEEeccCcchhhHHhcCCcEEEEecCCC------ceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeee
Confidence 89999999999999999999999999999 556666555444444444 4468888888999998 876654221
Q ss_pred CCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHH
Q 009993 398 GRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIER 458 (520)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~ 458 (520)
.... ....+...+. .-|.-++++.....+.+|.-........
T Consensus 954 ~q~k---------pppepahflq----------svgpSLV~a~~Gn~lgVYad~a~~ha~s 995 (1034)
T KOG4190|consen 954 LQDK---------PPPEPAHFLQ----------SVGPSLVTAQNGNILGVYADSAELHAES 995 (1034)
T ss_pred eccC---------CCCcchhhhh----------ccCceeEEeccCcEEEEEecchhhhhhh
Confidence 1100 0011111111 1134677777778889986554443333
No 235
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.25 E-value=7.1e-11 Score=124.56 Aligned_cols=208 Identities=16% Similarity=0.227 Sum_probs=146.7
Q ss_pred EeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCC
Q 009993 160 SGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE 237 (520)
Q Consensus 160 gs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~ 237 (520)
...++...-|..+.+.... +.+-..|.++. |...+.+||+.||.|++|....+.. .......+.
T Consensus 2186 ~n~~~~~~tq~~~~~~~~~--k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~-----------v~~~rt~g~- 2251 (2439)
T KOG1064|consen 2186 SNLPWLGSTQTSRGASVMI--KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ-----------VVCFRTAGN- 2251 (2439)
T ss_pred ccCCccccceecccceeEe--ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCe-----------EEEeeccCc-
Confidence 3334444555544332222 22233455565 7778899999999999999865531 122223333
Q ss_pred CCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEeeCCCEEEEEc----CCeEEEEECCCCeeeEE
Q 009993 238 GPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTS----GSDVYIWDTNSGCLLTV 310 (520)
Q Consensus 238 ~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~----d~~i~iwd~~~~~~~~~ 310 (520)
..|+.+.| .|+.+..+..||.+-+|.+. .+.....+ |......+..-+..+++++ ++.+.+||..-.....-
T Consensus 2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~ 2330 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSL 2330 (2439)
T ss_pred chhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccce
Confidence 77888888 78889999999999999987 33333333 6666777775556666654 47899999765443333
Q ss_pred eecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEe
Q 009993 311 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLID 390 (520)
Q Consensus 311 ~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd 390 (520)
+...|.+.++++++.|..+.|++|+.+|.|++||++.. +...++.. +. ...++++|+..|.|+||+
T Consensus 2331 v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr------ql~h~~~~-------~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2331 VHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR------QLRHTFQA-------LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred eeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH------HHHHHhhh-------hh-hhheeeccCcccceEEEE
Confidence 44579999999999999999999999999999999988 44444432 22 457999999999999999
Q ss_pred CCcccc
Q 009993 391 VRKLLR 396 (520)
Q Consensus 391 ~~~~~~ 396 (520)
+.....
T Consensus 2397 ~s~~~l 2402 (2439)
T KOG1064|consen 2397 LSEFGL 2402 (2439)
T ss_pred ccccch
Confidence 987633
No 236
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.24 E-value=1.3e-09 Score=94.58 Aligned_cols=237 Identities=14% Similarity=0.129 Sum_probs=159.0
Q ss_pred cccEEEEEEcc---CCC-EEEEEeCCCeEEEEECCCCcEEEEeCCCC--------ceEEEEecCCCEEEEEeCCCcEEEE
Q 009993 142 TEAVLTVFVLA---SAK-LLFTSGYDSIVRMWHLEDGFSIASSKPLG--------CTIRAVAADKKLLVAGGTDGFIHCW 209 (520)
Q Consensus 142 ~~~V~~l~~~~---~~~-~l~sgs~dg~v~vwd~~~~~~~~~~~~~~--------~~v~~~~~~~~~l~sg~~dg~i~vw 209 (520)
+..+..+.|.. +|. .++-+..+|.|.++..........+.+-. .-...+++.+..++++..+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 34455566652 344 55666778899999876555544444322 1222344778889999999999855
Q ss_pred EcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECC-CCcEEEEe--eeccCEEEEe
Q 009993 210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRA-LLKCLKVL--RHSDWVYGLA 283 (520)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~-~~~~~~~~--~~~~~v~~~~ 283 (520)
+..... .......+.|.-+.....| +++.+++|+.|+.+..||++ .++.+..- .|...|.++.
T Consensus 149 ~~t~~~-----------le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ 217 (339)
T KOG0280|consen 149 YETEMV-----------LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIY 217 (339)
T ss_pred ecceee-----------eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEe
Confidence 543321 2344567789999998888 67899999999999999999 34444432 2888899987
Q ss_pred ---eCCCEEEEEc-CCeEEEEECCC-CeeeEEeecccccceEEEEecCCC--CEEEEEeCCCeEEEEEcccCccccceee
Q 009993 284 ---PHDTTVASTS-GSDVYIWDTNS-GCLLTVVNGAHVGNTKSLARSHTG--DFLFTGGEDGAIHMYEIINDCTEANVLL 356 (520)
Q Consensus 284 ---~~~~~l~~~~-d~~i~iwd~~~-~~~~~~~~~~~~~~i~~l~~s~~~--~~l~tg~~dg~i~iwd~~~~~~~~~~~~ 356 (520)
+.+.++++|+ |..|++||.++ ++++..-. -.+.|+.+..+|.- ..++++-.+| .+|-+......... ..
T Consensus 218 ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~-~~ 293 (339)
T KOG0280|consen 218 SSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQ-IV 293 (339)
T ss_pred cCCCCCceEEEeccccceeeeehhcccCccccCc--cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchh-ee
Confidence 6778999999 99999999994 56665543 56899999999843 2344443344 67777766533211 23
Q ss_pred eeeecCCcCCEEEEEecC--CEEEEEe-CCCcEE-EEeCCc
Q 009993 357 VATWIPHTGPVNSLAFEF--PWLVSAA-GDGKLS-LIDVRK 393 (520)
Q Consensus 357 ~~~~~~h~~~v~~l~~~~--~~l~s~s-~dg~i~-vwd~~~ 393 (520)
......|.+-++.-.|+. ..|+|++ .|..++ +|-.-+
T Consensus 294 ~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 294 LPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred eeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 444556777677667743 4677765 577755 775544
No 237
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.24 E-value=1.9e-09 Score=94.95 Aligned_cols=298 Identities=14% Similarity=0.106 Sum_probs=177.7
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCC-CceEEEEecCCCE-EEEEeCCCcEEEEEcccCcceeeeccCCc
Q 009993 148 VFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPL-GCTIRAVAADKKL-LVAGGTDGFIHCWRAVEVLPHLFDISGSE 225 (520)
Q Consensus 148 l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~-l~sg~~dg~i~vwd~~~~~~~~~~~~~~~ 225 (520)
++|+|+|+++|+.+.- .+.|=|.++-+....+.-- ...-..++.+..+ |.....|+.|.+|++...+
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe---------- 82 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE---------- 82 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecce----------
Confidence 4799999999999865 6778787766543322110 0111233344444 4556778999999986542
Q ss_pred cccceEEeccCCCCeEEEEE--cC-CEEEEEecCCeEEEEECCCCcEEEEee--eccCEEEEeeCCCEEEEEc--C----
Q 009993 226 KQNTQFRLWEHEGPITSLAL--DL-TRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLAPHDTTVASTS--G---- 294 (520)
Q Consensus 226 ~~~~~~~~~~h~~~v~~l~~--~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~--d---- 294 (520)
-...+.....++.+++| +| ..|.+...|-.|.+|.+.+.+....-- +.....++.++|++.+..+ |
T Consensus 83 ---w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdy 159 (447)
T KOG4497|consen 83 ---WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDY 159 (447)
T ss_pred ---eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHH
Confidence 34455566788999999 66 456677789999999998876654432 4445555667887766654 2
Q ss_pred -------------------------------CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEE
Q 009993 295 -------------------------------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY 343 (520)
Q Consensus 295 -------------------------------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iw 343 (520)
..+.+||.--.-.+..+. ..-.+..++|+|.+++|++|+.|+.+++-
T Consensus 160 v~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe--~~lG~k~v~wsP~~qflavGsyD~~lrvl 237 (447)
T KOG4497|consen 160 VQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE--RGLGLKFVEWSPCNQFLAVGSYDQMLRVL 237 (447)
T ss_pred HHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee--eccceeEEEeccccceEEeeccchhhhhh
Confidence 123334322111122221 23468889999999999999999998875
Q ss_pred EcccCccc------------------------------------------------------cceeeeeeec------CC
Q 009993 344 EIINDCTE------------------------------------------------------ANVLLVATWI------PH 363 (520)
Q Consensus 344 d~~~~~~~------------------------------------------------------~~~~~~~~~~------~h 363 (520)
+--+.+.- ..+..+..++ ..
T Consensus 238 nh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnP 317 (447)
T KOG4497|consen 238 NHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNP 317 (447)
T ss_pred ceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCc
Confidence 43211000 0000111111 12
Q ss_pred cCCEEEEEecC--CEEEEEeC--CCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EEE
Q 009993 364 TGPVNSLAFEF--PWLVSAAG--DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIV 437 (520)
Q Consensus 364 ~~~v~~l~~~~--~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~ 437 (520)
...+.-++|++ .++++-.+ -+.+-+||++..... ......| +|.++.+++. .|+
T Consensus 318 k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~------------------avLiQk~--piraf~WdP~~prL~ 377 (447)
T KOG4497|consen 318 KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLH------------------AVLIQKH--PIRAFEWDPGRPRLV 377 (447)
T ss_pred ccccceeeecCCceEEeeecCCCCceEEEEechhhhhh------------------hhhhhcc--ceeEEEeCCCCceEE
Confidence 23466778876 35555443 267899999874211 1112223 3555555554 666
Q ss_pred EecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccc
Q 009993 438 CGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCS 492 (520)
Q Consensus 438 sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s 492 (520)
.+.....+++|...-...+.. +.+| -.+..+.+.-+|..++.++
T Consensus 378 vctg~srLY~W~psg~~~V~v---P~~G--------F~i~~l~W~~~g~~i~l~~ 421 (447)
T KOG4497|consen 378 VCTGKSRLYFWAPSGPRVVGV---PKKG--------FNIQKLQWLQPGEFIVLCG 421 (447)
T ss_pred EEcCCceEEEEcCCCceEEec---CCCC--------ceeeeEEecCCCcEEEEEc
Confidence 665556799998876433322 1111 3456788888888877754
No 238
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.24 E-value=2e-10 Score=107.34 Aligned_cols=159 Identities=14% Similarity=0.122 Sum_probs=113.3
Q ss_pred cccEEEEEEccCC-CEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeee
Q 009993 142 TEAVLTVFVLASA-KLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD 220 (520)
Q Consensus 142 ~~~V~~l~~~~~~-~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 220 (520)
+..|+|+.|-|.+ ..++.+-.+|.+.++|.+. ..+...+....-+++..+.....-+ ...
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~------~~~~t~p~~~~~k~~~~f~i~t~ks-------k~~------ 279 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI------VCGATAPSYQALKDGDQFAILTSKS-------KKT------ 279 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccc------cccCCCCcccccCCCCeeEEeeeec-------ccc------
Confidence 4789999999854 5666777899999998721 1111122222224444443322111 000
Q ss_pred ccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-C
Q 009993 221 ISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-G 294 (520)
Q Consensus 221 ~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d 294 (520)
..++....--.+.|..++| |+.+|++.+.||.+||||+.+.+.+...+ .-+...|++ |||++|++|+ |
T Consensus 280 ------rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGED 353 (636)
T KOG2394|consen 280 ------RNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGED 353 (636)
T ss_pred ------CCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCc
Confidence 1233333334568888999 88999999999999999999988777766 445556655 9999999999 9
Q ss_pred CeEEEEECCCCeeeEEeecccccceEEEEecC
Q 009993 295 SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH 326 (520)
Q Consensus 295 ~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~ 326 (520)
.-|.||.+..++.+..-. +|.+.|..++|.|
T Consensus 354 DLVtVwSf~erRVVARGq-GHkSWVs~VaFDp 384 (636)
T KOG2394|consen 354 DLVTVWSFEERRVVARGQ-GHKSWVSVVAFDP 384 (636)
T ss_pred ceEEEEEeccceEEEecc-ccccceeeEeecc
Confidence 999999999999888876 7999999999987
No 239
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.22 E-value=1e-11 Score=80.12 Aligned_cols=45 Identities=33% Similarity=0.637 Sum_probs=40.3
Q ss_pred ccCCCHHHHHHHccCCChhhhHHHhhhhhhHHHhhcCcchhhhhh
Q 009993 64 ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFY 108 (520)
Q Consensus 64 ~~~LP~el~~~i~~~L~~~~l~~~s~v~~~~~~~~~~~~lW~~~~ 108 (520)
+..||+|++.+||+||++.++.++++|||+|+.++.++.+|+.++
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~ 45 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLC 45 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence 467999999999999999999999999999999999889999864
No 240
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=1.3e-08 Score=96.21 Aligned_cols=314 Identities=13% Similarity=0.094 Sum_probs=185.1
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEE-----eCC-----CcEEEEEcc
Q 009993 143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAG-----GTD-----GFIHCWRAV 212 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg-----~~d-----g~i~vwd~~ 212 (520)
..+...+++++|++++.+ .+..++|++..++..+.+.......-..++|.+++|.+= ..+ -.+.+|+++
T Consensus 35 ~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ve 113 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVE 113 (566)
T ss_pred CcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCCCCCceeeeeec
Confidence 345677889989877765 467899999998865555544444444556878777651 112 346689887
Q ss_pred cCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--e--CCC
Q 009993 213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--P--HDT 287 (520)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~--~~~ 287 (520)
++.. .+ ........+ .+..| ....++.--..+.+++|+....+.+..--|...|..+. | ...
T Consensus 114 t~~~-~s----------~~q~k~Q~~--W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~ 180 (566)
T KOG2315|consen 114 TGVQ-RS----------QIQKKMQNG--WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPP 180 (566)
T ss_pred ccee-hh----------heehhhhcC--cccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCc
Confidence 7421 10 111111122 35566 22223332334679999988754443333556666555 3 344
Q ss_pred EEEEEc------CCeEEEEECCCCeeeEEeec--ccccceEEEEecCCCCE-EE--EEeCC---------CeEEEEEccc
Q 009993 288 TVASTS------GSDVYIWDTNSGCLLTVVNG--AHVGNTKSLARSHTGDF-LF--TGGED---------GAIHMYEIIN 347 (520)
Q Consensus 288 ~l~~~~------d~~i~iwd~~~~~~~~~~~~--~~~~~i~~l~~s~~~~~-l~--tg~~d---------g~i~iwd~~~ 347 (520)
.+++-- -+.|+||.......-..+.. =....-..+.|++.|.- |+ +..-| .++++.++..
T Consensus 181 ~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g 260 (566)
T KOG2315|consen 181 FVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG 260 (566)
T ss_pred eEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC
Confidence 555522 25699998763222111100 01112235678876653 22 22223 3578888773
Q ss_pred CccccceeeeeeecCCcCCEEEEEecCC----EEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcc
Q 009993 348 DCTEANVLLVATWIPHTGPVNSLAFEFP----WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE 423 (520)
Q Consensus 348 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (520)
. .....+ ...++|.++.|++. -++-|-.-..+.|+|++.. +...+....
T Consensus 261 ~------s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~--------------------~v~df~egp 313 (566)
T KOG2315|consen 261 E------SVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK--------------------PVFDFPEGP 313 (566)
T ss_pred c------eEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC--------------------EeEeCCCCC
Confidence 3 222222 34789999999873 3445556788999999852 111122223
Q ss_pred eeeEEEEecCCEEEEecC---CCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccccccccCCC
Q 009993 424 CNLLSVDIGADRIVCGGE---EGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPM 500 (520)
Q Consensus 424 ~~v~~~~~~~~~l~sg~~---Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~~~~~~~ 500 (520)
....-+.+.+++|+.+|. -|.|-|||+.+.+++.+...+ .-+-++|+|||.++.++..+..-..-
T Consensus 314 RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~------------~tt~~eW~PdGe~flTATTaPRlrvd 381 (566)
T KOG2315|consen 314 RNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA------------NTTVFEWSPDGEYFLTATTAPRLRVD 381 (566)
T ss_pred ccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC------------CceEEEEcCCCcEEEEEeccccEEec
Confidence 344556677787777664 578999999997766653222 23678999999999999988776655
Q ss_pred CCCcceeeecc
Q 009993 501 NGNRRSVWHNK 511 (520)
Q Consensus 501 ~~~~~~~~~~~ 511 (520)
+| ..|||--
T Consensus 382 Ng--~Kiwhyt 390 (566)
T KOG2315|consen 382 NG--IKIWHYT 390 (566)
T ss_pred CC--eEEEEec
Confidence 44 4599864
No 241
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=4.3e-09 Score=104.55 Aligned_cols=196 Identities=13% Similarity=0.029 Sum_probs=129.4
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeC---CCeEEEEECCCCcEEEEeCCCCce--EEEEecCCCEEE-EEeCCCc--E
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGY---DSIVRMWHLEDGFSIASSKPLGCT--IRAVAADKKLLV-AGGTDGF--I 206 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~---dg~v~vwd~~~~~~~~~~~~~~~~--v~~~~~~~~~l~-sg~~dg~--i 206 (520)
.+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++... +..+... -..++|+|+.|+ +.+.+|. |
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 272 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDI 272 (435)
T ss_pred cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCCCcccCcEECCCCCEEEEEEecCCCceE
Confidence 4557788889999999999999887764 4689999998886532 2222222 335779998775 5566665 6
Q ss_pred EEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec-CC--eEEEEECCCCcEEEEeeeccCEE-
Q 009993 207 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DM--TVRVWDRALLKCLKVLRHSDWVY- 280 (520)
Q Consensus 207 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg--~v~iwd~~~~~~~~~~~~~~~v~- 280 (520)
.+||+.++. ...+..+........| |++.++..+. +| .|.++|+.+++..........+.
T Consensus 273 y~~d~~~~~--------------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~ 338 (435)
T PRK05137 273 YTMDLRSGT--------------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYST 338 (435)
T ss_pred EEEECCCCc--------------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccC
Confidence 667776552 2334445555566777 7787776663 33 68888987765544333333333
Q ss_pred -EEeeCCCEEEEEc-C---CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCC------CeEEEEEcccC
Q 009993 281 -GLAPHDTTVASTS-G---SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED------GAIHMYEIIND 348 (520)
Q Consensus 281 -~~~~~~~~l~~~~-d---~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d------g~i~iwd~~~~ 348 (520)
.++|+++.++... + ..|.+||+..+.. ..+. ....+....|+|||+.|+..+.+ ..++++|+...
T Consensus 339 ~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt--~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 339 PVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT--SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred eEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc--CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 3569999988765 3 3588899866543 3333 22346788999999988765443 25777787655
No 242
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.20 E-value=1.7e-10 Score=111.78 Aligned_cols=286 Identities=14% Similarity=0.230 Sum_probs=178.9
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEECCCC-c---EEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCc
Q 009993 142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-F---SIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVL 215 (520)
Q Consensus 142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~-~---~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~ 215 (520)
.+++.++.++|.|+-++.++.-| +.+-|+... . .+..+.+-...-+.++ +...+-++......-.+|++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s- 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS- 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC-
Confidence 45677888999999999998877 566676543 2 2222222222223333 33333333344444557887543
Q ss_pred ceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCcE-EEEee-eccCEEEEe---eCCC
Q 009993 216 PHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKC-LKVLR-HSDWVYGLA---PHDT 287 (520)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~-~~~~v~~~~---~~~~ 287 (520)
......+.+.+|...|+.+.| ++..+++++.|-.|..||+++... +.... -......+. .++.
T Consensus 102 ---------s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~ 172 (1081)
T KOG0309|consen 102 ---------SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPN 172 (1081)
T ss_pred ---------CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcc
Confidence 334567788999999999999 557899999999999999987643 33332 111222233 5677
Q ss_pred EEEEEcCCeEEEEECCCCe-eeEEeecccccceEEEEecC-CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcC
Q 009993 288 TVASTSGSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSH-TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG 365 (520)
Q Consensus 288 ~l~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~i~~l~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 365 (520)
.+++..+..|.+||.+.|. ++..++ +|...|+.+.|.. ....+.+++.||+|++||....... -........
T Consensus 173 vlasshg~~i~vwd~r~gs~pl~s~K-~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e-----~~~~vtt~~ 246 (1081)
T KOG0309|consen 173 VLASSHGNDIFVWDLRKGSTPLCSLK-GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE-----SKRTVTTNF 246 (1081)
T ss_pred hhhhccCCceEEEeccCCCcceEEec-ccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc-----cceeccccC
Confidence 7777779999999999875 455555 5888899998865 3456889999999999998766321 111112233
Q ss_pred CEEEEEecC----CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEec---------
Q 009993 366 PVNSLAFEF----PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--------- 432 (520)
Q Consensus 366 ~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------- 432 (520)
+|..-.+-| .++.---.+..+-+++-++.... ..+.....++..+.||...|..+-|.
T Consensus 247 piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e---------~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~ 317 (1081)
T KOG0309|consen 247 PIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLE---------WNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDY 317 (1081)
T ss_pred cceeccccccCceeEeccccCCeeeeeccccchhhh---------hccccCCcceeeecCcchHHHHHhhhhcccccCCC
Confidence 444444433 12211112223444443331110 11112255667788888888776652
Q ss_pred -CC--EEEEecCCCeEEEEeCCch
Q 009993 433 -AD--RIVCGGEEGIVRIWNFSQA 453 (520)
Q Consensus 433 -~~--~l~sg~~Dg~v~iwd~~~~ 453 (520)
.+ .|+|=+.|..+|+|-+.+.
T Consensus 318 d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 318 DSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred CccceeEEEeecCCceEeeeccHH
Confidence 11 8999999999999999864
No 243
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=9.2e-11 Score=109.89 Aligned_cols=239 Identities=18% Similarity=0.213 Sum_probs=160.5
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCC-------CcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCc
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED-------GFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGF 205 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~-------~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~ 205 (520)
+..+.||+..|..++--.+.+-+++++.|++|++|.+.. ..+..+++.|..+|..+. .+.++++ +.||-
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA--SCDGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee--eccCc
Confidence 556889999999988777788899999999999999853 245667889999988876 4444554 56899
Q ss_pred EEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEE-ecCCeEEEEECCCCcEEEEee------ecc
Q 009993 206 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSG-SWDMTVRVWDRALLKCLKVLR------HSD 277 (520)
Q Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~------~~~ 277 (520)
|++||.--+.... ...-..-.+-.+.|.|+.- +...++.| +...+|+++|.+..+....++ ...
T Consensus 806 iHlWDPFigr~La--------q~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna 877 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLA--------QMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNA 877 (1034)
T ss_pred ceeecccccchhH--------hhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCch
Confidence 9999964432110 0000011122344555544 45555555 778999999999988777665 224
Q ss_pred CEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEE-EEcccCccccc
Q 009993 278 WVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHM-YEIINDCTEAN 353 (520)
Q Consensus 278 ~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~i-wd~~~~~~~~~ 353 (520)
.+.++. +.|+.++++- +|.|.+.|.++|+.+..+.. .......++ .|..+.++....|.++.+ |..-.+
T Consensus 878 ~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp-mecdllqla-apsdq~L~~saldHslaVnWhaldg----- 950 (1034)
T KOG4190|consen 878 LTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP-MECDLLQLA-APSDQALAQSALDHSLAVNWHALDG----- 950 (1034)
T ss_pred heeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc-ccchhhhhc-CchhHHHHhhcccceeEeeehhcCC-----
Confidence 455555 8899999887 89999999999998876652 333333333 355667777778888888 876665
Q ss_pred eeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeC
Q 009993 354 VLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDV 391 (520)
Q Consensus 354 ~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~ 391 (520)
....+......+..-+.--+..|+++.....+.||.-
T Consensus 951 -imh~q~kpppepahflqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 951 -IMHLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred -eeeeccCCCCcchhhhhccCceeEEeccCcEEEEEec
Confidence 2333333333333333334567778777778888854
No 244
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.18 E-value=6.8e-10 Score=94.66 Aligned_cols=248 Identities=16% Similarity=0.167 Sum_probs=148.8
Q ss_pred cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCC--CCeEEEEEcCCEEEEEecCCeEEEEECCCCcE
Q 009993 192 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE--GPITSLALDLTRIYSGSWDMTVRVWDRALLKC 269 (520)
Q Consensus 192 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~ 269 (520)
.....|+++..++.+......++......- ..........+..|. ++-.....-++.++++..||.+.+++.+.-..
T Consensus 45 v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~-rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~ 123 (319)
T KOG4714|consen 45 SAEYILFTGETSSQIISLGKGRGRCISLWE-RDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLA 123 (319)
T ss_pred hhhheeecccchhheeeeccceEEEechhh-cccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHh
Confidence 345566777777666655543332110000 000111222222232 33444445678899999999999999765211
Q ss_pred E-EEee---eccCEEEEeeCCCEEEEEcC------CeEEEEECCCCeeeEEeecccccceEEEEecCCC-CEEEEEeCCC
Q 009993 270 L-KVLR---HSDWVYGLAPHDTTVASTSG------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDG 338 (520)
Q Consensus 270 ~-~~~~---~~~~v~~~~~~~~~l~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~tg~~dg 338 (520)
+ ..+. ....-.++...++.+.++.- +..+.|+++..+....-.. ....|.+++-+|.. ..+++|+.||
T Consensus 124 ~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg 202 (319)
T KOG4714|consen 124 LMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDG 202 (319)
T ss_pred hhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc-ccccchhhhCCcccccEEEEecCCC
Confidence 1 1111 11111222345555555442 4456666654332221111 23348999999955 5677899999
Q ss_pred eEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCccccc--------CCCCCCCcee
Q 009993 339 AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRS--------GRPTSGKRVS 407 (520)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~--------~~~~~~~~~~ 407 (520)
.+-+||.++.. .+...+..|..+++.+-|+| ..|++++.||.+..||..+.... ..+..+..+.
T Consensus 203 ~~~l~d~rn~~-----~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~ 277 (319)
T KOG4714|consen 203 IVGLWDARNVA-----MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVK 277 (319)
T ss_pred eEEEEEccccc-----chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCccccccccccCCccc
Confidence 99999999884 56777889999999999965 79999999999999999842111 1122222222
Q ss_pred eeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEe
Q 009993 408 RVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWN 449 (520)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd 449 (520)
...++.. .+....-+|.+++..+..|++|++-+.|++++
T Consensus 278 s~i~i~~---ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 278 SRIEITS---LLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ceEeeec---cccccceeeeeeeccCceEEeccccceEEEec
Confidence 2222221 23444556788888899999999999999875
No 245
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.17 E-value=4.3e-08 Score=91.66 Aligned_cols=274 Identities=11% Similarity=0.090 Sum_probs=157.6
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCe---------------EEEEECCCCcEEEEeCCCCce-----EEEEecCCCEEEE
Q 009993 140 GHTEAVLTVFVLASAKLLFTSGYDSI---------------VRMWHLEDGFSIASSKPLGCT-----IRAVAADKKLLVA 199 (520)
Q Consensus 140 ~h~~~V~~l~~~~~~~~l~sgs~dg~---------------v~vwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~l~s 199 (520)
--...|.-+.|+|.+++|.|=+..+. +.+||..+|..+..+.....+ +..++.+..+++-
T Consensus 69 ~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~AR 148 (561)
T COG5354 69 FRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVAR 148 (561)
T ss_pred eecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhh
Confidence 34455666666666666666666666 566666666666665543333 4455544444332
Q ss_pred EeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC----CEEEE-----EecCCeEEEEECCCCcEE
Q 009993 200 GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL----TRIYS-----GSWDMTVRVWDRALLKCL 270 (520)
Q Consensus 200 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~s-----~s~dg~v~iwd~~~~~~~ 270 (520)
- ....++++++ ++... ..+...+. ...|....+.+ ..|+. ...++++++|.+..+..+
T Consensus 149 v-v~~sl~i~e~-t~n~~---------~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l 215 (561)
T COG5354 149 V-VGSSLYIHEI-TDNIE---------EHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVL 215 (561)
T ss_pred h-ccCeEEEEec-CCccc---------cCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCee
Confidence 2 2234556654 22100 00111111 24455566632 23332 456788999998866665
Q ss_pred EEee---eccCEEEEeeCCCEEEEEc------------CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEE--
Q 009993 271 KVLR---HSDWVYGLAPHDTTVASTS------------GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFT-- 333 (520)
Q Consensus 271 ~~~~---~~~~v~~~~~~~~~l~~~~------------d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~t-- 333 (520)
.+.. ..+.-.-..+.|+++.+-. ...+++++++........ .-.++|...+|.|.++.+++
T Consensus 216 ~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~--~~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 216 VTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK--DLKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred eeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec--cccccceeeeecccCCceeEEe
Confidence 5443 1111111224455443311 256888888754433332 35789999999999887665
Q ss_pred EeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCC---CcEEEEeCCcccccCCCCCCCceee
Q 009993 334 GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGD---GKLSLIDVRKLLRSGRPTSGKRVSR 408 (520)
Q Consensus 334 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~ 408 (520)
|-.+..+.++|++.. +. +......=+.+.|+| ++++.++-| |.|-+||......
T Consensus 294 g~~pa~~s~~~lr~N--------l~-~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~------------ 352 (561)
T COG5354 294 GYMPASVSVFDLRGN--------LR-FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK------------ 352 (561)
T ss_pred cccccceeecccccc--------eE-EecCCcccccccccCcccEEEEecCCccccceEEeccCCceE------------
Confidence 457889999999877 11 122334456677876 677776654 7899999876321
Q ss_pred eeecCCCcccccCcceeeEEEEecCCEEEEec------CCCeEEEEeCCchHh
Q 009993 409 VIEVEPPQRMLHGFECNLLSVDIGADRIVCGG------EEGIVRIWNFSQAFE 455 (520)
Q Consensus 409 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~------~Dg~v~iwd~~~~~~ 455 (520)
....+.+.......+++++.++.+.. .|..|.|||+.....
T Consensus 353 ------~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 353 ------VAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred ------EEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence 11124455566677888888555443 378899999986543
No 246
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.16 E-value=1.8e-08 Score=98.81 Aligned_cols=265 Identities=10% Similarity=0.041 Sum_probs=164.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCc----------eE-EEEecCCCEEEEEeCCCcEEEEEcccCcceeeec
Q 009993 153 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC----------TI-RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDI 221 (520)
Q Consensus 153 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~----------~v-~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 221 (520)
.+..+++++.++.+.-+|..+|+.+........ .+ ......+..++.++.+|.+..+|..+|+.. +
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~-W-- 144 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVA-W-- 144 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCc-c--
Confidence 366788888899999999999998877643220 00 011234667888889999999999888531 1
Q ss_pred cCCccccceEEeccCCCCeE-EEEEcCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEE-------EeeCCCEEEEEc
Q 009993 222 SGSEKQNTQFRLWEHEGPIT-SLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYG-------LAPHDTTVASTS 293 (520)
Q Consensus 222 ~~~~~~~~~~~~~~h~~~v~-~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~-------~~~~~~~l~~~~ 293 (520)
+.... +.+. +....++.++.++.++.+..+|.++|+.+.......+... +..++..++...
T Consensus 145 ----------~~~~~-~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~ 213 (394)
T PRK11138 145 ----------QTKVA-GEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGD 213 (394)
T ss_pred ----------cccCC-CceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcC
Confidence 11111 1111 1223566788888899999999999999887763222110 112344444444
Q ss_pred CCeEEEEECCCCeeeEEeeccccc------ceEEEEecC--CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcC
Q 009993 294 GSDVYIWDTNSGCLLTVVNGAHVG------NTKSLARSH--TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG 365 (520)
Q Consensus 294 d~~i~iwd~~~~~~~~~~~~~~~~------~i~~l~~s~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 365 (520)
++.+..+|..+|+.+......... ....+..+| .+..++.++.+|.+..+|..+++ .+.... .+
T Consensus 214 ~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~------~~W~~~--~~ 285 (394)
T PRK11138 214 NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ------IVWKRE--YG 285 (394)
T ss_pred CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC------EEEeec--CC
Confidence 899999999999877665321110 011111223 35677778889999999999884 222221 11
Q ss_pred CEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeE
Q 009993 366 PVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIV 445 (520)
Q Consensus 366 ~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v 445 (520)
....+...+..++.++.+|.+..+|..++......... . -.....++ ..+.+|+.++.||.|
T Consensus 286 ~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~---------~-----~~~~~sp~----v~~g~l~v~~~~G~l 347 (394)
T PRK11138 286 SVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDL---------L-----HRLLTAPV----LYNGYLVVGDSEGYL 347 (394)
T ss_pred CccCcEEECCEEEEEcCCCeEEEEECCCCcEEEccccc---------C-----CCcccCCE----EECCEEEEEeCCCEE
Confidence 22234556788888999999999999876432211000 0 00011111 236688889999999
Q ss_pred EEEeCCchHhHH
Q 009993 446 RIWNFSQAFEIE 457 (520)
Q Consensus 446 ~iwd~~~~~~~~ 457 (520)
++.|..+++.+.
T Consensus 348 ~~ld~~tG~~~~ 359 (394)
T PRK11138 348 HWINREDGRFVA 359 (394)
T ss_pred EEEECCCCCEEE
Confidence 999998886543
No 247
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=3.8e-08 Score=97.25 Aligned_cols=205 Identities=13% Similarity=0.019 Sum_probs=123.7
Q ss_pred CeEEEEECCCCcEEEEeCCCCc--eEEEEecCCCEEEEEeC---CCcEEEEEcccCcceeeeccCCccccceEEeccCCC
Q 009993 164 SIVRMWHLEDGFSIASSKPLGC--TIRAVAADKKLLVAGGT---DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEG 238 (520)
Q Consensus 164 g~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~l~sg~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 238 (520)
..|.+||.+...... +..+.. .-..++|||+.|+..+. +..|.+|++.++... ....+.+
T Consensus 179 ~~l~~~d~dg~~~~~-lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-----------~l~~~~~--- 243 (429)
T PRK03629 179 YELRVSDYDGYNQFV-VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-----------QVASFPR--- 243 (429)
T ss_pred eeEEEEcCCCCCCEE-eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-----------EccCCCC---
Confidence 368899987554332 222333 33466799998886543 356889998766321 1112222
Q ss_pred CeEEEEE--cCCEEEEE-ecCC--eEEEEECCCCcEEEEeeeccCEE--EEeeCCCEEEEEcC--C--eEEEEECCCCee
Q 009993 239 PITSLAL--DLTRIYSG-SWDM--TVRVWDRALLKCLKVLRHSDWVY--GLAPHDTTVASTSG--S--DVYIWDTNSGCL 307 (520)
Q Consensus 239 ~v~~l~~--~~~~l~s~-s~dg--~v~iwd~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~d--~--~i~iwd~~~~~~ 307 (520)
.+....| |++.|+.. +.+| .|.+||+.+++......+...+. .++|+++.|+..++ + .|+++|+.++..
T Consensus 244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 3345667 77777654 4444 58899999887655544333333 34589998877662 3 466667777654
Q ss_pred eEEeecccccceEEEEecCCCCEEEEEeCC---CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeC
Q 009993 308 LTVVNGAHVGNTKSLARSHTGDFLFTGGED---GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG 382 (520)
Q Consensus 308 ~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~ 382 (520)
.. +. .+........|+|+|++|+..+.+ ..|.+||+.++.. ..+... .......|+| .+|+.++.
T Consensus 324 ~~-lt-~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-------~~Lt~~-~~~~~p~~SpDG~~i~~~s~ 393 (429)
T PRK03629 324 QR-IT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-------QVLTDT-FLDETPSIAPNGTMVIYSSS 393 (429)
T ss_pred EE-ee-cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-------EEeCCC-CCCCCceECCCCCEEEEEEc
Confidence 33 32 233445678899999998876543 3588899877731 112111 1223456755 68888887
Q ss_pred CCc---EEEEeCCc
Q 009993 383 DGK---LSLIDVRK 393 (520)
Q Consensus 383 dg~---i~vwd~~~ 393 (520)
++. +.++++..
T Consensus 394 ~~~~~~l~~~~~~G 407 (429)
T PRK03629 394 QGMGSVLNLVSTDG 407 (429)
T ss_pred CCCceEEEEEECCC
Confidence 764 66667643
No 248
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=2.7e-08 Score=98.82 Aligned_cols=207 Identities=11% Similarity=0.039 Sum_probs=127.6
Q ss_pred cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec---CCeEEEEECCCCcEEEEeeeccCE
Q 009993 205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW---DMTVRVWDRALLKCLKVLRHSDWV 279 (520)
Q Consensus 205 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~~v 279 (520)
.|.++|.... ....+..|...+.+..| |++.|+..+. +..|.+||+.+++......+...+
T Consensus 183 ~l~~~d~dg~--------------~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~ 248 (435)
T PRK05137 183 RLAIMDQDGA--------------NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMT 248 (435)
T ss_pred EEEEECCCCC--------------CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcc
Confidence 6777776433 23345567888999999 7788877664 468999999988765443344444
Q ss_pred E--EEeeCCCEEEEE-c-CC--eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC-CC--eEEEEEcccCcc
Q 009993 280 Y--GLAPHDTTVAST-S-GS--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DG--AIHMYEIINDCT 350 (520)
Q Consensus 280 ~--~~~~~~~~l~~~-~-d~--~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~-dg--~i~iwd~~~~~~ 350 (520)
. .++|+|+.++.. + ++ .|++||+.++.... +. .+........|+|||+.|+..+. +| .|+++|+.++.
T Consensus 249 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt-~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~- 325 (435)
T PRK05137 249 FAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LT-DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN- 325 (435)
T ss_pred cCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE-cc-CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC-
Confidence 3 355899877643 3 44 48888998876543 33 35555677899999998887664 33 57788876552
Q ss_pred ccceeeeeeecCCcCCEEEEEecC--CEEEEEeCC---CcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCccee
Q 009993 351 EANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGD---GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECN 425 (520)
Q Consensus 351 ~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (520)
...+..+.+.+....|+| +.|+..+.+ ..|.+||+.+.... ....+....
T Consensus 326 ------~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-------------------~lt~~~~~~ 380 (435)
T PRK05137 326 ------PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-------------------ILTSGFLVE 380 (435)
T ss_pred ------eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-------------------eccCCCCCC
Confidence 222323344556677866 577665543 35788887542110 000111223
Q ss_pred eEEEEecCCEEEEecC-C-----CeEEEEeCCch
Q 009993 426 LLSVDIGADRIVCGGE-E-----GIVRIWNFSQA 453 (520)
Q Consensus 426 v~~~~~~~~~l~sg~~-D-----g~v~iwd~~~~ 453 (520)
...++++++.|+..+. . ..+.++|+..+
T Consensus 381 ~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 381 GPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 3467788886655433 2 25777777543
No 249
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.14 E-value=2.1e-08 Score=87.31 Aligned_cols=261 Identities=14% Similarity=0.092 Sum_probs=155.3
Q ss_pred CCeEEEEECCCCcEEE--EeC--CC-CceEEEEe---cCCC-EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEe
Q 009993 163 DSIVRMWHLEDGFSIA--SSK--PL-GCTIRAVA---ADKK-LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL 233 (520)
Q Consensus 163 dg~v~vwd~~~~~~~~--~~~--~~-~~~v~~~~---~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 233 (520)
.|.+.++++...+... +++ .| .....-+. .++. .++-+..+|.|.++......... ....+
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~----------~L~~l 114 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV----------HLRGL 114 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeee----------eeccc
Confidence 4567788876654332 111 11 11111122 3444 56667778888888764432111 00111
Q ss_pred ccCCC---CeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEE--Eee-ecc--CEEEEe-eCCCEEEEEc-CCeEEEEE
Q 009993 234 WEHEG---PITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLK--VLR-HSD--WVYGLA-PHDTTVASTS-GSDVYIWD 301 (520)
Q Consensus 234 ~~h~~---~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~--~~~-~~~--~v~~~~-~~~~~l~~~~-d~~i~iwd 301 (520)
..-.- ...++.| .+..++++-.+|.+.+-+........ ..+ |.- ++..+. .+++++++|+ |+.+..||
T Consensus 115 s~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D 194 (339)
T KOG0280|consen 115 SSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWD 194 (339)
T ss_pred chhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEE
Confidence 11111 1234445 55678888889998866655444333 333 444 444444 6678999999 89999999
Q ss_pred CC-CCeeeEEeecccccceEEEEecC-CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCC---E
Q 009993 302 TN-SGCLLTVVNGAHVGNTKSLARSH-TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP---W 376 (520)
Q Consensus 302 ~~-~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~ 376 (520)
++ .++.+..-...|...|.++.-+| .+.+++||+.|-.|++||.++.. +++..- .-.+.|..+.++|. .
T Consensus 195 ~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~-----kPl~~~-~v~GGVWRi~~~p~~~~~ 268 (339)
T KOG0280|consen 195 IRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG-----KPLFKA-KVGGGVWRIKHHPEIFHR 268 (339)
T ss_pred ecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc-----CccccC-ccccceEEEEecchhhhH
Confidence 99 44444443335888899998776 57799999999999999999653 222221 22378999999883 3
Q ss_pred EEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EEEEec-CCCeEE-EEeCCc
Q 009993 377 LVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGG-EEGIVR-IWNFSQ 452 (520)
Q Consensus 377 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~-~Dg~v~-iwd~~~ 452 (520)
|+.+..-.-.+|-+....... +.........|.+-++.-+|+.. .|+|++ .|..++ +|-.-+
T Consensus 269 lL~~CMh~G~ki~~~~~~~~e--------------~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 269 LLAACMHNGAKILDSSDKVLE--------------FQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred HHHHHHhcCceEEEecccccc--------------hheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 344444444777777654211 12223345567776776666544 678765 577755 786554
Q ss_pred h
Q 009993 453 A 453 (520)
Q Consensus 453 ~ 453 (520)
+
T Consensus 335 ~ 335 (339)
T KOG0280|consen 335 G 335 (339)
T ss_pred C
Confidence 4
No 250
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.12 E-value=3.5e-10 Score=119.51 Aligned_cols=219 Identities=16% Similarity=0.211 Sum_probs=160.9
Q ss_pred hccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCC-ceEEE--EecCCCEEEEEeCCCcEEEEEcccC
Q 009993 138 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-CTIRA--VAADKKLLVAGGTDGFIHCWRAVEV 214 (520)
Q Consensus 138 l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~-~~v~~--~~~~~~~l~sg~~dg~i~vwd~~~~ 214 (520)
++.|-..|.++.=+|...+.+||+.||.|++|....+..+..+...+ ..|.. ++..|+.+..+..||.+.+|.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-- 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-- 2281 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC--
Confidence 45567888999889999999999999999999999998887775322 33433 45789999999999999999874
Q ss_pred cceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEe---cCCeEEEEECCCC---cEEEEeeeccCEEEEe--eCC
Q 009993 215 LPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS---WDMTVRVWDRALL---KCLKVLRHSDWVYGLA--PHD 286 (520)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s---~dg~v~iwd~~~~---~~~~~~~~~~~v~~~~--~~~ 286 (520)
.........|.....++.|-+..+++++ .++.+.+||.--. .++. .-|...++++. |..
T Consensus 2282 ------------pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~ 2348 (2439)
T KOG1064|consen 2282 ------------PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKH 2348 (2439)
T ss_pred ------------CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcc
Confidence 2355667789999999999667777764 5689999996532 2333 33777788777 899
Q ss_pred CEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcC
Q 009993 287 TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG 365 (520)
Q Consensus 287 ~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 365 (520)
.++++|+ +|.|++||++..+....+.. +. ...++++|+..|.|+||++............. .|.+
T Consensus 2349 qllisggr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~---ak~g 2414 (2439)
T KOG1064|consen 2349 QLLISGGRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH---AKQG 2414 (2439)
T ss_pred eEEEecCCcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCchhh---cccc
Confidence 9999999 99999999998877665541 33 56789999999999999998873322111111 1111
Q ss_pred C--E--EEEEec-CCEEEEEeCCCc
Q 009993 366 P--V--NSLAFE-FPWLVSAAGDGK 385 (520)
Q Consensus 366 ~--v--~~l~~~-~~~l~s~s~dg~ 385 (520)
- + ..+... .++|.+++.||+
T Consensus 2415 fFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2415 FFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred hhhhcCceeeeccCceEEEecCCCC
Confidence 1 1 222222 268888888874
No 251
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.11 E-value=3.5e-09 Score=93.94 Aligned_cols=240 Identities=19% Similarity=0.250 Sum_probs=155.3
Q ss_pred EEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEE
Q 009993 177 IASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYS 252 (520)
Q Consensus 177 ~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s 252 (520)
+..+++|...+.+.. |...-+++.+.|.++++|--.+... .. .........+++++.+ +...|+.
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q---------~w--psI~~~mP~~~~~~~y~~e~~~L~v 85 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQ---------YW--PSIYHYMPSPCSAMEYVSESRRLYV 85 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccc---------cC--chhhhhCCCCceEeeeeccceEEEE
Confidence 345667776666544 7778899999999999996443211 01 1111123567788888 4567888
Q ss_pred EecCCeEEEEECCC----CcEEEEe-eeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEe
Q 009993 253 GSWDMTVRVWDRAL----LKCLKVL-RHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLAR 324 (520)
Q Consensus 253 ~s~dg~v~iwd~~~----~~~~~~~-~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~ 324 (520)
|-..|++.-+.+.. ...++.. .|...+..+- .....+++++ |..+.---.+.+..+..+. .....+++.+
T Consensus 86 g~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~--~~~~~t~~~~ 163 (404)
T KOG1409|consen 86 GQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN--FETPASALQF 163 (404)
T ss_pred EEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE--eeccCCCCce
Confidence 88999998886542 2222222 2778887765 4456677766 6655444444444332221 1111112222
Q ss_pred cCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCC
Q 009993 325 SHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTS 402 (520)
Q Consensus 325 s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 402 (520)
.- .+...|...|.|.+-.+..... .++.++.+|.+.++++.|++ ..|++|..|..+.+||+...
T Consensus 164 d~--~~~fvGd~~gqvt~lr~~~~~~----~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~-------- 229 (404)
T KOG1409|consen 164 DA--LYAFVGDHSGQITMLKLEQNGC----QLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR-------- 229 (404)
T ss_pred ee--EEEEecccccceEEEEEeecCC----ceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC--------
Confidence 11 1556677777777766554422 67889999999999999986 69999999999999999753
Q ss_pred CCceeeeeecCCCcccccCcceeeEEEEecC--CEEEEecCCCeEEEEeCCch
Q 009993 403 GKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGIVRIWNFSQA 453 (520)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~v~iwd~~~~ 453 (520)
......+.+|...|.++..-. ..+++++.||.|.+|+....
T Consensus 230 ----------~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 230 ----------KGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ----------cceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 222333556666666655433 48999999999999998754
No 252
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.10 E-value=2.3e-08 Score=99.35 Aligned_cols=195 Identities=14% Similarity=0.061 Sum_probs=123.4
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCC---CeEEEEECCCCcEEEEeCCC-CceEEEEecCCCEEEE-EeCCC--cEE
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYD---SIVRMWHLEDGFSIASSKPL-GCTIRAVAADKKLLVA-GGTDG--FIH 207 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~d---g~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~l~s-g~~dg--~i~ 207 (520)
.+.+..+...+...+|+|||++|+.++.+ ..|.+||+.+++........ .....+++|+++.|+. .+.++ .|.
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~ 261 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY 261 (417)
T ss_pred CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence 44556677789999999999999987654 47999999988654322211 1223467799987764 44444 588
Q ss_pred EEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecC-C--eEEEEECCCCcEEEEeeeccCEE--
Q 009993 208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD-M--TVRVWDRALLKCLKVLRHSDWVY-- 280 (520)
Q Consensus 208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d-g--~v~iwd~~~~~~~~~~~~~~~v~-- 280 (520)
+||+.++. ...+..+........| +++.|+..+.. + .|.++|+.+++......+...+.
T Consensus 262 ~~d~~~~~--------------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~ 327 (417)
T TIGR02800 262 VMDLDGKQ--------------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASP 327 (417)
T ss_pred EEECCCCC--------------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCe
Confidence 88876652 1222233333444566 77777766543 3 68888888776543333333333
Q ss_pred EEeeCCCEEEEEc-CC---eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCC---eEEEEEcc
Q 009993 281 GLAPHDTTVASTS-GS---DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG---AIHMYEII 346 (520)
Q Consensus 281 ~~~~~~~~l~~~~-d~---~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg---~i~iwd~~ 346 (520)
.+++++++++.+. ++ .|.+||+.++.... +. .........|+|+|+.|+..+.++ .+++.+..
T Consensus 328 ~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~--~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 328 SWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LT--DTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred EECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-cc--CCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 4558899888877 54 79999998865432 22 112334568999999888776654 35555543
No 253
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.10 E-value=7.8e-08 Score=94.33 Aligned_cols=261 Identities=11% Similarity=0.069 Sum_probs=156.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEE
Q 009993 153 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR 232 (520)
Q Consensus 153 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 232 (520)
++..++.++.++.+..+|.++|+.+.+.........+-...+..++.++.+|.+..+|..+|+. .+...... ....
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~-~W~~~~~~---~~~~ 194 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAV-KWTVNLDV---PSLT 194 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCE-eeeecCCC---Cccc
Confidence 3566778889999999999999988776543321111112356677788899999999988853 22111100 0001
Q ss_pred eccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEeeeccC--------EE----EEeeCCCEEEEEc-CCeEEE
Q 009993 233 LWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDW--------VY----GLAPHDTTVASTS-GSDVYI 299 (520)
Q Consensus 233 ~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~--------v~----~~~~~~~~l~~~~-d~~i~i 299 (520)
..+...++ ..++.++.++.+|.+..+|..+++.+.......+ .. +-...+..+++++ ++.+..
T Consensus 195 ~~~~~sP~----v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~a 270 (394)
T PRK11138 195 LRGESAPA----TAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVA 270 (394)
T ss_pred ccCCCCCE----EECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEE
Confidence 11111222 2345677788899999999999987665431110 00 1111234444444 999999
Q ss_pred EECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecC-CcCCEEEEEecCCEEE
Q 009993 300 WDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP-HTGPVNSLAFEFPWLV 378 (520)
Q Consensus 300 wd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~l~ 378 (520)
+|..+|+.+.....+. ...+. ..+..++.++.+|.+..+|..++. .+..... ......+....+.+|+
T Consensus 271 ld~~tG~~~W~~~~~~---~~~~~--~~~~~vy~~~~~g~l~ald~~tG~------~~W~~~~~~~~~~~sp~v~~g~l~ 339 (394)
T PRK11138 271 LDLRSGQIVWKREYGS---VNDFA--VDGGRIYLVDQNDRVYALDTRGGV------ELWSQSDLLHRLLTAPVLYNGYLV 339 (394)
T ss_pred EECCCCCEEEeecCCC---ccCcE--EECCEEEEEcCCCeEEEEECCCCc------EEEcccccCCCcccCCEEECCEEE
Confidence 9999998877654221 11222 246778888899999999998883 2222111 0111223334567889
Q ss_pred EEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeC
Q 009993 379 SAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNF 450 (520)
Q Consensus 379 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~ 450 (520)
.++.||.|.+.|..++....+.. +.+.. ........++.|+.++.||.|+.++.
T Consensus 340 v~~~~G~l~~ld~~tG~~~~~~~-----------------~~~~~-~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 340 VGDSEGYLHWINREDGRFVAQQK-----------------VDSSG-FLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEeCCCEEEEEECCCCCEEEEEE-----------------cCCCc-ceeCCEEECCEEEEEeCCceEEEEeC
Confidence 99999999999988753221100 00000 01111123568889999999988764
No 254
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.08 E-value=9.7e-08 Score=84.45 Aligned_cols=264 Identities=16% Similarity=0.131 Sum_probs=156.7
Q ss_pred cccEEEEEEccCCCEEE-EEeCCCeEEEEECCCCcEEEEeCCCCceEE--EEecCCC-EEEEEeCCCcEEEEEcccCcce
Q 009993 142 TEAVLTVFVLASAKLLF-TSGYDSIVRMWHLEDGFSIASSKPLGCTIR--AVAADKK-LLVAGGTDGFIHCWRAVEVLPH 217 (520)
Q Consensus 142 ~~~V~~l~~~~~~~~l~-sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~ 217 (520)
-+.|.-+.|..|..+++ ..+.|+.|.+|++...+-...+......+. +++|+|+ .|.+...|-.|.||.+.+....
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 45677788887766554 557789999999988877777765544444 5569995 5667777899999998775322
Q ss_pred eeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec------------------------------------CCeE
Q 009993 218 LFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW------------------------------------DMTV 259 (520)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~------------------------------------dg~v 259 (520)
.. .-.+..+..++| +|++.+.++. +..+
T Consensus 128 ~~--------------~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~l 193 (447)
T KOG4497|consen 128 LL--------------PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWL 193 (447)
T ss_pred Ee--------------cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEE
Confidence 11 111222233333 3333322221 1233
Q ss_pred EEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeee----------------------------
Q 009993 260 RVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLL---------------------------- 308 (520)
Q Consensus 260 ~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~---------------------------- 308 (520)
.+||.--.-.+..+...-.+..++ |.++++++|+ |+.+++.+--+.+..
T Consensus 194 aVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~ 273 (447)
T KOG4497|consen 194 AVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLL 273 (447)
T ss_pred EEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhc
Confidence 344422211222222223344444 6778888888 777766443221110
Q ss_pred --------------------------------EEeec-----ccccceEEEEecCCCCEEEEEeC--CCeEEEEEcccCc
Q 009993 309 --------------------------------TVVNG-----AHVGNTKSLARSHTGDFLFTGGE--DGAIHMYEIINDC 349 (520)
Q Consensus 309 --------------------------------~~~~~-----~~~~~i~~l~~s~~~~~l~tg~~--dg~i~iwd~~~~~ 349 (520)
..++. .....+.-++|++|..+++|-.+ -+.+-+||++..+
T Consensus 274 ~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~ 353 (447)
T KOG4497|consen 274 HHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK 353 (447)
T ss_pred ccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh
Confidence 00000 01224667899999999988644 3669999998872
Q ss_pred cccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeE
Q 009993 350 TEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLL 427 (520)
Q Consensus 350 ~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 427 (520)
. ...-....+|....|+| ..|+.+.....+++|.......... ...|....-.
T Consensus 354 ------l-~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v------------------P~~GF~i~~l 408 (447)
T KOG4497|consen 354 ------L-HAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV------------------PKKGFNIQKL 408 (447)
T ss_pred ------h-hhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec------------------CCCCceeeeE
Confidence 2 22223456899999998 4777777777899998876432221 1234444455
Q ss_pred EEEecCCEEEEecCCCe
Q 009993 428 SVDIGADRIVCGGEEGI 444 (520)
Q Consensus 428 ~~~~~~~~l~sg~~Dg~ 444 (520)
.+..+++.++-.+.|..
T Consensus 409 ~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 409 QWLQPGEFIVLCGKDAF 425 (447)
T ss_pred EecCCCcEEEEEcCCce
Confidence 55566778888888864
No 255
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=6.2e-08 Score=96.41 Aligned_cols=215 Identities=15% Similarity=0.066 Sum_probs=133.1
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCC---CeEEEEECCCCcEEEE--eCCCCceEEEEecCCCEEE-EEeCCC--cE
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYD---SIVRMWHLEDGFSIAS--SKPLGCTIRAVAADKKLLV-AGGTDG--FI 206 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~d---g~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~-sg~~dg--~i 206 (520)
.+.+..+...+...+|+|||+.|+..+.+ ..|.+||+.+++.... ..++. ....++|+|+.|+ +.+.+| .|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~-~~~~~SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLN-GAPAWSPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCc-CCeEECCCCCEEEEEEccCCCceE
Confidence 34556677889999999999998876644 3689999988865432 22222 2356789999877 444555 57
Q ss_pred EEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec-CC--eEEEEECCCCcEEEEee--eccCE
Q 009993 207 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DM--TVRVWDRALLKCLKVLR--HSDWV 279 (520)
Q Consensus 207 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg--~v~iwd~~~~~~~~~~~--~~~~v 279 (520)
.+||+.++. ...+..+........| +++.++..+. +| .|.++|+.+++...... .....
T Consensus 270 y~~d~~~~~--------------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~ 335 (430)
T PRK00178 270 YVMDLASRQ--------------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNAR 335 (430)
T ss_pred EEEECCCCC--------------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccc
Confidence 778887653 1223334444555667 6777665553 33 57778888776543322 11223
Q ss_pred EEEeeCCCEEEEEc--CC--eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCC-C--eEEEEEcccCcccc
Q 009993 280 YGLAPHDTTVASTS--GS--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED-G--AIHMYEIINDCTEA 352 (520)
Q Consensus 280 ~~~~~~~~~l~~~~--d~--~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d-g--~i~iwd~~~~~~~~ 352 (520)
..++++++.++... ++ .|.++|+.+++... +.. ........|+|+|+.++..+.+ | .|.++++...
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~---- 408 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR---- 408 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----
Confidence 35669999988766 33 58899998876533 321 1222356899999988766543 3 4666666443
Q ss_pred ceeeeeeecCCcCCEEEEEecC
Q 009993 353 NVLLVATWIPHTGPVNSLAFEF 374 (520)
Q Consensus 353 ~~~~~~~~~~h~~~v~~l~~~~ 374 (520)
....+..+.+.+...+|+|
T Consensus 409 ---~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 409 ---VRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred ---ceEECcCCCCCcCCCccCC
Confidence 2223333445566666665
No 256
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=4e-08 Score=97.46 Aligned_cols=205 Identities=15% Similarity=0.061 Sum_probs=125.8
Q ss_pred CeEEEEECCCCcEEEEeCCCCceEE--EEecCCCEEEEEeCC---CcEEEEEcccCcceeeeccCCccccceEEeccCCC
Q 009993 164 SIVRMWHLEDGFSIASSKPLGCTIR--AVAADKKLLVAGGTD---GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEG 238 (520)
Q Consensus 164 g~v~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 238 (520)
..|.+||.... ....+..+...+. .++|+++.|+..+.+ ..|.+||+.++.. ..+..+.+
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--------------~~l~~~~g 248 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--------------ELVASFRG 248 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--------------EEeccCCC
Confidence 46899998644 3344444444454 456999999887743 4699999876632 12222333
Q ss_pred CeEEEEE--cCCEEE-EEecCC--eEEEEECCCCcEEEEeeeccCE--EEEeeCCCEEEEEc--CCe--EEEEECCCCee
Q 009993 239 PITSLAL--DLTRIY-SGSWDM--TVRVWDRALLKCLKVLRHSDWV--YGLAPHDTTVASTS--GSD--VYIWDTNSGCL 307 (520)
Q Consensus 239 ~v~~l~~--~~~~l~-s~s~dg--~v~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~--d~~--i~iwd~~~~~~ 307 (520)
...+..| +++.++ +.+.+| .|++||+.+++......+.... .+++++++.++.++ ++. |+++|+.+++.
T Consensus 249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 4446677 677664 555555 5999999988765433333322 34568999888776 343 77778877764
Q ss_pred eEEeecccccceEEEEecCCCCEEEEEeCCC---eEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeC
Q 009993 308 LTVVNGAHVGNTKSLARSHTGDFLFTGGEDG---AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG 382 (520)
Q Consensus 308 ~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg---~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~ 382 (520)
..... +.......+|+|+|++|+..+.++ .|.+||+.++. .. .+. +........|+| ++|+..+.
T Consensus 329 ~~lt~--~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~------~~-~Lt-~~~~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 329 ERLTF--QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS------VR-TLT-PGSLDESPSFAPNGSMVLYATR 398 (433)
T ss_pred EEeec--CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC------eE-ECC-CCCCCCCceECCCCCEEEEEEe
Confidence 33322 233445689999999988765443 59999987763 22 222 222334567765 56665554
Q ss_pred C---CcEEEEeCCc
Q 009993 383 D---GKLSLIDVRK 393 (520)
Q Consensus 383 d---g~i~vwd~~~ 393 (520)
+ +.|.++++..
T Consensus 399 ~~g~~~L~~~~~~g 412 (433)
T PRK04922 399 EGGRGVLAAVSTDG 412 (433)
T ss_pred cCCceEEEEEECCC
Confidence 2 3577777753
No 257
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.07 E-value=6.1e-09 Score=90.44 Aligned_cols=117 Identities=18% Similarity=0.289 Sum_probs=83.8
Q ss_pred eeEEeecccccceEEEEecCCCCEEEE--EeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeC
Q 009993 307 LLTVVNGAHVGNTKSLARSHTGDFLFT--GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG 382 (520)
Q Consensus 307 ~~~~~~~~~~~~i~~l~~s~~~~~l~t--g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~ 382 (520)
....+.....++|.+++|+|+|+.+++ |..++.|.+||++ . ..+..+. ...++.+.|+| ++|++|+.
T Consensus 50 ~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~------~~i~~~~--~~~~n~i~wsP~G~~l~~~g~ 120 (194)
T PF08662_consen 50 PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-G------KKIFSFG--TQPRNTISWSPDGRFLVLAGF 120 (194)
T ss_pred ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-c------cEeEeec--CCCceEEEECCCCCEEEEEEc
Confidence 344443335567999999999998755 4467899999996 3 3555553 46788999987 68888774
Q ss_pred ---CCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecC------CCeEEEEeCC
Q 009993 383 ---DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGE------EGIVRIWNFS 451 (520)
Q Consensus 383 ---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~------Dg~v~iwd~~ 451 (520)
.|.|.+||+++.... ...........+++|+|++|++++. |..++||++.
T Consensus 121 ~n~~G~l~~wd~~~~~~i-------------------~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 121 GNLNGDLEFWDVRKKKKI-------------------STFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred cCCCcEEEEEECCCCEEe-------------------eccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 467999999864222 2223334566778888888888774 7889999986
No 258
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.06 E-value=3.4e-08 Score=85.77 Aligned_cols=108 Identities=19% Similarity=0.333 Sum_probs=83.0
Q ss_pred CCCCeEEEEE--cCCEEEE--EecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc-C---CeEEEEECCCC
Q 009993 236 HEGPITSLAL--DLTRIYS--GSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-G---SDVYIWDTNSG 305 (520)
Q Consensus 236 h~~~v~~l~~--~~~~l~s--~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d---~~i~iwd~~~~ 305 (520)
..++|.+++| +++.+++ |..++.|.+||++ ++.+..+. ...++.+. |+|+++++++ + |.|.+||.++.
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 3457999999 5566544 4567899999996 66666664 34445554 9999999986 3 67999999998
Q ss_pred eeeEEeecccccceEEEEecCCCCEEEEEeC------CCeEEEEEcccC
Q 009993 306 CLLTVVNGAHVGNTKSLARSHTGDFLFTGGE------DGAIHMYEIIND 348 (520)
Q Consensus 306 ~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~------dg~i~iwd~~~~ 348 (520)
+.+.... |. .++.++|+|+|++|+++.. |+.++||+....
T Consensus 136 ~~i~~~~--~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 136 KKISTFE--HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEeeccc--cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 8887764 43 4789999999999998764 788999998644
No 259
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.06 E-value=8.7e-07 Score=83.10 Aligned_cols=272 Identities=14% Similarity=0.060 Sum_probs=154.6
Q ss_pred CeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeC----------CCcEEEEEcccCcceeeeccCCccccceEEe
Q 009993 164 SIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGT----------DGFIHCWRAVEVLPHLFDISGSEKQNTQFRL 233 (520)
Q Consensus 164 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 233 (520)
++|.+.|..+++.+..+..-..+-..++++++.|+++.. +..|.+||..+.....--..+..+ .-.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p----~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP----RFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc----hhh
Confidence 899999999999888876432222238999998887766 789999999887421100000000 000
Q ss_pred ccCCCCeEEEEEcCCEEEEEe-c-CCeEEEEECCCCcEEEEeeeccCEEEEe-eCCCEEEEEcCCeEEEEECCC-Ceee-
Q 009993 234 WEHEGPITSLALDLTRIYSGS-W-DMTVRVWDRALLKCLKVLRHSDWVYGLA-PHDTTVASTSGSDVYIWDTNS-GCLL- 308 (520)
Q Consensus 234 ~~h~~~v~~l~~~~~~l~s~s-~-dg~v~iwd~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~d~~i~iwd~~~-~~~~- 308 (520)
.+-......+.-||++++... . +..|-+.|+.+++.+..+.-++...-+. .+...++.+.||......+.+ |+..
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~ 182 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKI 182 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEE
Confidence 011122334444888888765 3 6899999999999999887433222222 333333444454444333222 2211
Q ss_pred EEeecccc--cce-EEEEecC-CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecC-------CcCCEEEEEecC--C
Q 009993 309 TVVNGAHV--GNT-KSLARSH-TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP-------HTGPVNSLAFEF--P 375 (520)
Q Consensus 309 ~~~~~~~~--~~i-~~l~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~~--~ 375 (520)
....--+. .++ ..-.|.+ +|.++++..+ |+|.+.|+........ .....+.. ..+.+.-+++++ +
T Consensus 183 ~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~-~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~ 260 (352)
T TIGR02658 183 KPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL-PAIEAFTEAEKADGWRPGGWQQVAYHRARD 260 (352)
T ss_pred eeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceec-ceeeeccccccccccCCCcceeEEEcCCCC
Confidence 11000011 000 0003455 8888888777 9999999755432111 12221111 223344478864 5
Q ss_pred EEEEEe----------CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC-EEEEec-CCC
Q 009993 376 WLVSAA----------GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGG-EEG 443 (520)
Q Consensus 376 ~l~s~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~-~Dg 443 (520)
.++... ..+.|.++|..+..... +..-++...-..++++++ +|++.. .++
T Consensus 261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~------------------~i~vG~~~~~iavS~Dgkp~lyvtn~~s~ 322 (352)
T TIGR02658 261 RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLR------------------KIELGHEIDSINVSQDAKPLLYALSTGDK 322 (352)
T ss_pred EEEEEecCCccccccCCCCEEEEEECCCCeEEE------------------EEeCCCceeeEEECCCCCeEEEEeCCCCC
Confidence 555532 12579999998753222 222345555667778888 666555 688
Q ss_pred eEEEEeCCchHhHHHH
Q 009993 444 IVRIWNFSQAFEIERR 459 (520)
Q Consensus 444 ~v~iwd~~~~~~~~~~ 459 (520)
.|.+.|..+++.+++.
T Consensus 323 ~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 323 TLYIFDAETGKELSSV 338 (352)
T ss_pred cEEEEECcCCeEEeee
Confidence 9999999998777654
No 260
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=8e-08 Score=90.96 Aligned_cols=265 Identities=14% Similarity=0.172 Sum_probs=166.3
Q ss_pred cEEEEEEccCCCEEEEE-----eC-----CCeEEEEECCCCcEEEEeCCC--CceEEEEecCCCEEEEEeCCCcEEEEEc
Q 009993 144 AVLTVFVLASAKLLFTS-----GY-----DSIVRMWHLEDGFSIASSKPL--GCTIRAVAADKKLLVAGGTDGFIHCWRA 211 (520)
Q Consensus 144 ~V~~l~~~~~~~~l~sg-----s~-----dg~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 211 (520)
.++++.|+|-|.+|.|= .. ...+++|+++++.....+... ...+..++.|..+. +--..+.+.+|+.
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~-arlv~nev~f~~~ 153 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLA-ARLVSNEVQFYDL 153 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhh-hhhhcceEEEEec
Confidence 67899999999988762 11 235779999996555544432 22344555555432 2223467888887
Q ss_pred ccCcceeeeccCCccccceEEeccCCCCeEEEEEcC----CEEEE-----EecCCeEEEEECCCCcEEEEe-----eecc
Q 009993 212 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL----TRIYS-----GSWDMTVRVWDRALLKCLKVL-----RHSD 277 (520)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~s-----~s~dg~v~iwd~~~~~~~~~~-----~~~~ 277 (520)
... ......+ |...|+.+.+.+ ..+++ .+.-..|++|...-......+ -..+
T Consensus 154 ~~f------------~~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkad 219 (566)
T KOG2315|consen 154 GSF------------KTIQHKL--SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKAD 219 (566)
T ss_pred CCc------------cceeeee--eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccc
Confidence 552 1122222 567777777733 23332 345568999987522221111 1112
Q ss_pred CEE-EEeeCCC--EEEEEc--C---------CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEE--EeCCCeEE
Q 009993 278 WVY-GLAPHDT--TVASTS--G---------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFT--GGEDGAIH 341 (520)
Q Consensus 278 ~v~-~~~~~~~--~l~~~~--d---------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~t--g~~dg~i~ 341 (520)
.|. .....+. ++++.+ | .++++.++........+ ...++|.++.|+|++.-+++ |-.-.++.
T Consensus 220 kvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L--~k~GPVhdv~W~~s~~EF~VvyGfMPAkvt 297 (566)
T KOG2315|consen 220 KVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL--LKEGPVHDVTWSPSGREFAVVYGFMPAKVT 297 (566)
T ss_pred eeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec--CCCCCceEEEECCCCCEEEEEEecccceEE
Confidence 221 1112222 222222 3 35888888855555554 36899999999999986554 67788999
Q ss_pred EEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeC---CCcEEEEeCCcccccCCCCCCCceeeeeecCCCc
Q 009993 342 MYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG---DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQ 416 (520)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (520)
|||++.. ++..+ ..++-+++-|+| ++|+.+|- -|.|-|||+.+.. ..
T Consensus 298 ifnlr~~-------~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K-------------------~i 349 (566)
T KOG2315|consen 298 IFNLRGK-------PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK-------------------LI 349 (566)
T ss_pred EEcCCCC-------EeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchh-------------------hc
Confidence 9999766 33333 456778899987 56666554 4899999998832 33
Q ss_pred ccccCcceeeEEEEecCCEEEEecC------CCeEEEEeCCch
Q 009993 417 RMLHGFECNLLSVDIGADRIVCGGE------EGIVRIWNFSQA 453 (520)
Q Consensus 417 ~~~~~~~~~v~~~~~~~~~l~sg~~------Dg~v~iwd~~~~ 453 (520)
..+......+..++++|.+++|+.. |..++||++.-.
T Consensus 350 ~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 350 AKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred cccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 3345566788999999998887774 678999998744
No 261
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=2.5e-07 Score=87.47 Aligned_cols=315 Identities=14% Similarity=0.087 Sum_probs=192.6
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeC-----------CCcEEEEEcccC
Q 009993 146 LTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGT-----------DGFIHCWRAVEV 214 (520)
Q Consensus 146 ~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~-----------dg~i~vwd~~~~ 214 (520)
+-+.|||-|.||+|--.-| |.+|--++-..++.+......-..++|+.++|+|-+. ...+.|||+.+|
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence 5678999999999988766 9999877777777777667777889999999998653 256899999998
Q ss_pred cceeeeccCCccccceEEeccC--CCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEE
Q 009993 215 LPHLFDISGSEKQNTQFRLWEH--EGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTV 289 (520)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l 289 (520)
... .....+.+. .-++.--++|+++++--.. .+|.||+..+..++-.-. ....|..++ |.+++|
T Consensus 293 ~lk----------rsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~ll 361 (698)
T KOG2314|consen 293 LLK----------RSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLL 361 (698)
T ss_pred chh----------cceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceE
Confidence 521 011111111 1122222337788877666 578999987644432222 233444444 777777
Q ss_pred EEEc-C-----CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEe----------CCCeEEEEEcccCccccc
Q 009993 290 ASTS-G-----SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG----------EDGAIHMYEIINDCTEAN 353 (520)
Q Consensus 290 ~~~~-d-----~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~----------~dg~i~iwd~~~~~~~~~ 353 (520)
|--. . ..+.+-.+.+++.++.... +.-.=..+.|-.+|++|+.-- .=..+-|+.++....
T Consensus 362 AYwtpe~~~~parvtL~evPs~~~iRt~nl-fnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI--- 437 (698)
T KOG2314|consen 362 AYWTPETNNIPARVTLMEVPSKREIRTKNL-FNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI--- 437 (698)
T ss_pred EEEcccccCCcceEEEEecCccceeeeccc-eeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC---
Confidence 6544 1 3477777777776665542 332333566777888877521 112356677666532
Q ss_pred eeeeeeecCCcCCEEEEEecC--CEEEEEeC---CCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEE
Q 009993 354 VLLVATWIPHTGPVNSLAFEF--PWLVSAAG---DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLS 428 (520)
Q Consensus 354 ~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 428 (520)
++... .-...|...+|.| +.+++-+. ..++.+|.+.+.... ......+......-..
T Consensus 438 --pve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~---------------~~lVk~~dk~~~N~vf 499 (698)
T KOG2314|consen 438 --PVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK---------------PSLVKELDKKFANTVF 499 (698)
T ss_pred --Cceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCc---------------hhhhhhhcccccceEE
Confidence 22222 2345788889976 44443332 467889988752111 1222333444455667
Q ss_pred EEecCCEEEEe---cCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccccccccCCCCCCc
Q 009993 429 VDIGADRIVCG---GEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNR 504 (520)
Q Consensus 429 ~~~~~~~l~sg---~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~~~~~~~~~~~ 504 (520)
++|.|.+++.+ |..|.+.++|.............. -.-+.+.|.|.|++..++|.-.+.-..+|.+
T Consensus 500 wsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh----------~~at~veWDPtGRYvvT~ss~wrhk~d~GYr 568 (698)
T KOG2314|consen 500 WSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH----------FAATEVEWDPTGRYVVTSSSSWRHKVDNGYR 568 (698)
T ss_pred EcCCCcEEEEEEecccccceEEEecchhhhhhccCccc----------cccccceECCCCCEEEEeeehhhhccccceE
Confidence 77777766554 457899999998532221111111 1236789999999999988766655554444
No 262
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.05 E-value=3.9e-07 Score=82.84 Aligned_cols=211 Identities=16% Similarity=0.112 Sum_probs=138.6
Q ss_pred CCeEEEEECCCCcEEEEeCC---CCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCC
Q 009993 163 DSIVRMWHLEDGFSIASSKP---LGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGP 239 (520)
Q Consensus 163 dg~v~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 239 (520)
+|+|..||..+|+.+....- ....+....+++..+++++.++.|..||..+|... + ...+.+....
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~-W----------~~~~~~~~~~ 70 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVL-W----------RFDLPGPISG 70 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEE-E----------EEECSSCGGS
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEE-E----------Eeeccccccc
Confidence 68999999999999887743 33333223457778888899999999999888521 1 1111111111
Q ss_pred eEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEe-eec---c---CEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEe
Q 009993 240 ITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVL-RHS---D---WVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVV 311 (520)
Q Consensus 240 v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~---~---~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~ 311 (520)
. ...+++.++.++.|+.+..+|..+|+.+... ... . ........+..++++. ++.|..+|+++|+.+...
T Consensus 71 ~--~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 71 A--PVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKY 148 (238)
T ss_dssp G--EEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEE
T ss_pred e--eeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEe
Confidence 1 3447788888888999999999999998884 321 1 1122334577777777 999999999999998887
Q ss_pred ecccccc---------eEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEE-EEecCCEEEEEe
Q 009993 312 NGAHVGN---------TKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNS-LAFEFPWLVSAA 381 (520)
Q Consensus 312 ~~~~~~~---------i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~l~s~s 381 (520)
....... +..-....++ .++.++.++.+..+|+.++ ..+.... ...+.. ...+...|+.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg------~~~w~~~--~~~~~~~~~~~~~~l~~~~ 219 (238)
T PF13360_consen 149 PVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATG------EKLWSKP--ISGIYSLPSVDGGTLYVTS 219 (238)
T ss_dssp ESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTT------EEEEEEC--SS-ECECEECCCTEEEEEE
T ss_pred ecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCC------CEEEEec--CCCccCCceeeCCEEEEEe
Confidence 6422111 1122222234 7777777886444499998 3332222 223343 555778888888
Q ss_pred CCCcEEEEeCCccc
Q 009993 382 GDGKLSLIDVRKLL 395 (520)
Q Consensus 382 ~dg~i~vwd~~~~~ 395 (520)
.++.|..||++++.
T Consensus 220 ~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 220 SDGRLYALDLKTGK 233 (238)
T ss_dssp TTTEEEEEETTTTE
T ss_pred CCCEEEEEECCCCC
Confidence 99999999999863
No 263
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.03 E-value=4e-06 Score=80.52 Aligned_cols=273 Identities=14% Similarity=0.174 Sum_probs=161.3
Q ss_pred EEEEeCC----CeEEEEEC--CCCcEE--EEe-CCCCceEEEEecCCCEEEEEeC----CCcEEEEEcccCcceeeeccC
Q 009993 157 LFTSGYD----SIVRMWHL--EDGFSI--ASS-KPLGCTIRAVAADKKLLVAGGT----DGFIHCWRAVEVLPHLFDISG 223 (520)
Q Consensus 157 l~sgs~d----g~v~vwd~--~~~~~~--~~~-~~~~~~v~~~~~~~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~~ 223 (520)
++.|+++ +.|.+|++ ++++.. ... ......-.++++++++|++... +|.|..|++.....
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g------- 74 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG------- 74 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT-------
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc-------
Confidence 4566665 68999888 444332 222 3344555677899999999877 46898888765310
Q ss_pred CccccceEEeccCCCCeEEEEE--cCCEEEEEe-cCCeEEEEECCC-CcEEEE---eee-----------ccCEEEE--e
Q 009993 224 SEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDRAL-LKCLKV---LRH-----------SDWVYGL--A 283 (520)
Q Consensus 224 ~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s-~dg~v~iwd~~~-~~~~~~---~~~-----------~~~v~~~--~ 283 (520)
.................+++ ++++|+++. .+|+|.++++.. +..... +.+ .....++ .
T Consensus 75 --~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~ 152 (345)
T PF10282_consen 75 --TLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS 152 (345)
T ss_dssp --EEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-
T ss_pred --eeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEEC
Confidence 11122223223445556777 778887776 489999999986 433322 211 1223344 4
Q ss_pred eCCCEEEEEc--CCeEEEEECCCCe--e--eEEeecccccceEEEEecCCCCEEEEEeC-CCeEEEEEcccCc-ccccee
Q 009993 284 PHDTTVASTS--GSDVYIWDTNSGC--L--LTVVNGAHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIINDC-TEANVL 355 (520)
Q Consensus 284 ~~~~~l~~~~--d~~i~iwd~~~~~--~--~~~~~~~~~~~i~~l~~s~~~~~l~tg~~-dg~i~iwd~~~~~-~~~~~~ 355 (520)
|+++++++.. ...|.+|++.... . ...+..........+.|+|+++++++..+ ++.|.+|++.... ......
T Consensus 153 pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~ 232 (345)
T PF10282_consen 153 PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQ 232 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEE
Confidence 8999988877 5789999997654 2 22333345667899999999998876554 7889999998221 111111
Q ss_pred eeeeecC---CcCCEEEEEecC--CEEEEEe-CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEE
Q 009993 356 LVATWIP---HTGPVNSLAFEF--PWLVSAA-GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSV 429 (520)
Q Consensus 356 ~~~~~~~---h~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 429 (520)
.+..+.. .......|.++| ++|+++. .+++|.+|++.... .....+..+. ..+....-+.+
T Consensus 233 ~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~--------g~l~~~~~~~-----~~G~~Pr~~~~ 299 (345)
T PF10282_consen 233 TISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT--------GTLTLVQTVP-----TGGKFPRHFAF 299 (345)
T ss_dssp EEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT--------TTEEEEEEEE-----ESSSSEEEEEE
T ss_pred EeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC--------CceEEEEEEe-----CCCCCccEEEE
Confidence 1222211 112577888875 5666655 56789999995310 0111111100 12333455667
Q ss_pred EecCCEEEEec-CCCeEEEEeCC
Q 009993 430 DIGADRIVCGG-EEGIVRIWNFS 451 (520)
Q Consensus 430 ~~~~~~l~sg~-~Dg~v~iwd~~ 451 (520)
++++++|+++. .++.|.+|++.
T Consensus 300 s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 300 SPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEE
T ss_pred eCCCCEEEEEecCCCeEEEEEEe
Confidence 77888666554 77899999875
No 264
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=1.7e-07 Score=93.09 Aligned_cols=213 Identities=14% Similarity=0.081 Sum_probs=128.8
Q ss_pred hhccccccEEEEEEccCCCEEEEEeCC---CeEEEEECCCCcEEE--EeCCCCceEEEEecCCCEEEE-EeCCCc--EEE
Q 009993 137 VLYGHTEAVLTVFVLASAKLLFTSGYD---SIVRMWHLEDGFSIA--SSKPLGCTIRAVAADKKLLVA-GGTDGF--IHC 208 (520)
Q Consensus 137 ~l~~h~~~V~~l~~~~~~~~l~sgs~d---g~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s-g~~dg~--i~v 208 (520)
.+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++... .+.++.. -..++|+|+.|+. .+.+|. |.+
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING-APRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC-CeeECCCCCEEEEEEeCCCCeEEEE
Confidence 344556678889999999988876543 258889998876432 2333322 3467899997764 566665 666
Q ss_pred EEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec-CC--eEEEEECCCCcEEEEeeecc--CEEE
Q 009993 209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DM--TVRVWDRALLKCLKVLRHSD--WVYG 281 (520)
Q Consensus 209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg--~v~iwd~~~~~~~~~~~~~~--~v~~ 281 (520)
+|+.++. ...+..+........| |++.++..+. ++ .|.++|+.+++......... .-..
T Consensus 291 ~dl~tg~--------------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~ 356 (448)
T PRK04792 291 VDIATKA--------------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGS 356 (448)
T ss_pred EECCCCC--------------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCee
Confidence 7776552 2233334444556677 6777665543 33 56677887776544322211 1235
Q ss_pred EeeCCCEEEEEc--CC--eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC-CCe--EEEEEcccCccccce
Q 009993 282 LAPHDTTVASTS--GS--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DGA--IHMYEIINDCTEANV 354 (520)
Q Consensus 282 ~~~~~~~l~~~~--d~--~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~-dg~--i~iwd~~~~~~~~~~ 354 (520)
++++++.++..+ ++ .|.++|+.+++... +... .......|+|+|+.|+..+. +|. +++++....
T Consensus 357 ~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~--~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~------ 427 (448)
T PRK04792 357 ITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST--RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR------ 427 (448)
T ss_pred ECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC------
Confidence 669999887765 33 46778888876432 2211 12224579999998776554 333 666776433
Q ss_pred eeeeeecCCcCCEEEEEecC
Q 009993 355 LLVATWIPHTGPVNSLAFEF 374 (520)
Q Consensus 355 ~~~~~~~~h~~~v~~l~~~~ 374 (520)
....+..+.+.+...+|+|
T Consensus 428 -~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 428 -FKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred -ceEECcCCCCCcCCCccCC
Confidence 3333444455666667765
No 265
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.98 E-value=3.1e-06 Score=79.46 Aligned_cols=224 Identities=11% Similarity=0.032 Sum_probs=137.1
Q ss_pred EccCCCEEEEEeC----------CCeEEEEECCCCcEEEEeCCC---------CceEEEEecCCCEEEEEe-C-CCcEEE
Q 009993 150 VLASAKLLFTSGY----------DSIVRMWHLEDGFSIASSKPL---------GCTIRAVAADKKLLVAGG-T-DGFIHC 208 (520)
Q Consensus 150 ~~~~~~~l~sgs~----------dg~v~vwd~~~~~~~~~~~~~---------~~~v~~~~~~~~~l~sg~-~-dg~i~v 208 (520)
++||++.|+.+.. +..|.+||..+++.+..+.-. ......++++|++|++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8999998887755 789999999999999887632 223678889999998776 3 689999
Q ss_pred EEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCC-CcE-EEEee--e-------cc
Q 009993 209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRAL-LKC-LKVLR--H-------SD 277 (520)
Q Consensus 209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~-~~~-~~~~~--~-------~~ 277 (520)
.|+.++.. ...+.- .+...-+........+-+.||......+.+ ++. ..... + ..
T Consensus 133 vD~~~~kv-------------v~ei~v-p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~r 198 (352)
T TIGR02658 133 VDLEGKAF-------------VRMMDV-PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINH 198 (352)
T ss_pred EECCCCcE-------------EEEEeC-CCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccC
Confidence 99987642 111111 111111111111112223334333322221 110 11100 1 11
Q ss_pred CEEEEe-eCCCEEEEEcCCeEEEEECCCC-----eeeEEeecc------cccceEEEEecCCCCEEEEEe----------
Q 009993 278 WVYGLA-PHDTTVASTSGSDVYIWDTNSG-----CLLTVVNGA------HVGNTKSLARSHTGDFLFTGG---------- 335 (520)
Q Consensus 278 ~v~~~~-~~~~~l~~~~d~~i~iwd~~~~-----~~~~~~~~~------~~~~i~~l~~s~~~~~l~tg~---------- 335 (520)
+ .+. .++++++++..|+|++.|+... .....+..+ ..+...-++++|+++.+++..
T Consensus 199 P--~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~ 276 (352)
T TIGR02658 199 P--AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKT 276 (352)
T ss_pred C--ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccC
Confidence 1 223 3888998888999999995433 333322211 233445599999999888743
Q ss_pred CCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--C-EEEEEe-CCCcEEEEeCCcccc
Q 009993 336 EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P-WLVSAA-GDGKLSLIDVRKLLR 396 (520)
Q Consensus 336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~-~l~s~s-~dg~i~vwd~~~~~~ 396 (520)
..+.|.++|..+. +.+..+.. ...+..+++++ + +|++.. .++.|.+.|..+...
T Consensus 277 ~~~~V~ViD~~t~------kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 277 ASRFLFVVDAKTG------KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred CCCEEEEEECCCC------eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 1247999999888 55555443 34788999976 4 666555 678899999988543
No 266
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.97 E-value=9.8e-09 Score=91.14 Aligned_cols=275 Identities=16% Similarity=0.181 Sum_probs=158.2
Q ss_pred EEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccC------------CCCeEEEEE----cCCEEEE
Q 009993 189 AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH------------EGPITSLAL----DLTRIYS 252 (520)
Q Consensus 189 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h------------~~~v~~l~~----~~~~l~s 252 (520)
.+...|.+|++|..+|.|.++.-.......+ .....+..| ...|..+.| +...++.
T Consensus 32 ef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey--------~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 32 EFDHYGERLATGDKGGRVVLFEREKLYKGEY--------NFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred EeecccceEeecCCCCeEEEeecccccccce--------eeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 3457899999999999999986433221011 011112222 356777888 3456788
Q ss_pred EecCCeEEEEECCCCcEEEE---ee---eccCEEEEe-----eCCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEE
Q 009993 253 GSWDMTVRVWDRALLKCLKV---LR---HSDWVYGLA-----PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKS 321 (520)
Q Consensus 253 ~s~dg~v~iwd~~~~~~~~~---~~---~~~~v~~~~-----~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~ 321 (520)
.+.|.+|++|-+........ +. ....+.++. +....+. ..+.+.+..+|...|++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve--------------a~prRv~aNaHtyhiNS 169 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE--------------ASPRRVYANAHTYHINS 169 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceee--------------eeeeeeccccceeEeee
Confidence 88899999998864432220 11 122222222 1111111 12455566789999999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCC-----cCCEEEEEecC---CEEEEEeCCCcEEEEeCCc
Q 009993 322 LARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH-----TGPVNSLAFEF---PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 322 l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~ 393 (520)
+.++.|+..++++ +|=.|.+|++.-..... .+....++ +..|++..|+| +.++-.+..|+|++-|++.
T Consensus 170 IS~NsD~Et~lSA-DdLRINLWnlei~d~sF---nIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 170 ISVNSDKETFLSA-DDLRINLWNLEIIDQSF---NIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred eeecCccceEeec-cceeeeeccccccCCce---eEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence 9999999988876 67789999986543221 22223333 34688899988 6899999999999999995
Q ss_pred ccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEe--cCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccc----
Q 009993 394 LLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--GADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIR---- 467 (520)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~---- 467 (520)
....... .......+-......+.+--.+|..+.| +|+++++-+. -+|++||+......-+..+...-.+
T Consensus 246 ~aLCd~h---sKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc 321 (433)
T KOG1354|consen 246 SALCDAH---SKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLC 321 (433)
T ss_pred hhhhcch---hhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHH
Confidence 3211100 0000000001111122333344555555 5568888776 5899999964433222111111111
Q ss_pred --cchhhhhccceeeeccCCCccccccc
Q 009993 468 --LENRMRRRKLQTEMSSKGGRTDQCSV 493 (520)
Q Consensus 468 --~~~~~~~~~~~~~~s~~g~~~~~~s~ 493 (520)
.+...--.+..++|+-++.++.+.+.
T Consensus 322 ~lYEnD~IfdKFec~~sg~~~~v~TGsy 349 (433)
T KOG1354|consen 322 SLYENDAIFDKFECSWSGNDSYVMTGSY 349 (433)
T ss_pred HHhhccchhheeEEEEcCCcceEecccc
Confidence 12222234577899999888888664
No 267
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.95 E-value=6.4e-08 Score=92.26 Aligned_cols=181 Identities=14% Similarity=0.246 Sum_probs=141.8
Q ss_pred CEEEEEecCCeEEEEECCCCcEEEEee----eccCEE----EEe------------------eCCCEEEEEc-CCeEEEE
Q 009993 248 TRIYSGSWDMTVRVWDRALLKCLKVLR----HSDWVY----GLA------------------PHDTTVASTS-GSDVYIW 300 (520)
Q Consensus 248 ~~l~s~s~dg~v~iwd~~~~~~~~~~~----~~~~v~----~~~------------------~~~~~l~~~~-d~~i~iw 300 (520)
.+++....||.+++||...++....+. ..+..+ .+. .+-..++-|. .|.|.+|
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y 85 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY 85 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence 578889999999999999988777664 112111 121 1233566666 8999999
Q ss_pred ECCCCeeeEEee-cccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCC--EE
Q 009993 301 DTNSGCLLTVVN-GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP--WL 377 (520)
Q Consensus 301 d~~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l 377 (520)
+...|+....+. ..|.+.|.++.++.+-..|.+++.|+.+..|+.... ..+..+......+.+++..|+ .+
T Consensus 86 s~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~------~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 86 SVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK------VIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc------eeeeeeccCCCccceEEEcCCCCEE
Confidence 999999988887 679999999999999999999999999999999988 677788888888999999876 77
Q ss_pred EEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEec-------CC-EEEEecCCCeEEEEe
Q 009993 378 VSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG-------AD-RIVCGGEEGIVRIWN 449 (520)
Q Consensus 378 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~-~l~sg~~Dg~v~iwd 449 (520)
++++ +.|++||+++ ......+.||...|.+++|. |. +|.+...+..+.+|-
T Consensus 160 ~~as--~~ik~~~~~~-------------------kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIET-------------------KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred Eecc--ceEEEEEccC-------------------ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence 7776 5799999998 45566788999998888873 23 455555666788888
Q ss_pred CCchHh
Q 009993 450 FSQAFE 455 (520)
Q Consensus 450 ~~~~~~ 455 (520)
+.....
T Consensus 219 v~~~~k 224 (541)
T KOG4547|consen 219 VEKEDK 224 (541)
T ss_pred EEcccc
Confidence 765433
No 268
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.95 E-value=3.3e-07 Score=91.05 Aligned_cols=153 Identities=19% Similarity=0.192 Sum_probs=100.7
Q ss_pred EeccCCCCeEEEEE--cCCEEEEEecC---CeEEEEECCCCcEEEEeeeccCEE--EEeeCCCEEEEE-c-C--CeEEEE
Q 009993 232 RLWEHEGPITSLAL--DLTRIYSGSWD---MTVRVWDRALLKCLKVLRHSDWVY--GLAPHDTTVAST-S-G--SDVYIW 300 (520)
Q Consensus 232 ~~~~h~~~v~~l~~--~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~-~-d--~~i~iw 300 (520)
.+..+...+.+..| ++++|+.++.+ ..|++||+.+++......+...+. .++++++.|+.. + + ..|++|
T Consensus 184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~ 263 (417)
T TIGR02800 184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVM 263 (417)
T ss_pred EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEE
Confidence 34456667778888 77888776644 479999999886654444433333 445888877654 3 3 359999
Q ss_pred ECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC-CC--eEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--C
Q 009993 301 DTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DG--AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P 375 (520)
Q Consensus 301 d~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~ 375 (520)
|+.++...... .+........|+|+|+.|+..+. ++ .|+++|+.++. ...+..+...+....|+| +
T Consensus 264 d~~~~~~~~l~--~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~-------~~~l~~~~~~~~~~~~spdg~ 334 (417)
T TIGR02800 264 DLDGKQLTRLT--NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE-------VRRLTFRGGYNASPSWSPDGD 334 (417)
T ss_pred ECCCCCEEECC--CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-------EEEeecCCCCccCeEECCCCC
Confidence 99887644332 24444556789999998876554 33 57777776552 223333445566778865 6
Q ss_pred EEEEEeCCC---cEEEEeCCc
Q 009993 376 WLVSAAGDG---KLSLIDVRK 393 (520)
Q Consensus 376 ~l~s~s~dg---~i~vwd~~~ 393 (520)
+|+.++.++ .|.+||+.+
T Consensus 335 ~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 335 LIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred EEEEEEccCCceEEEEEeCCC
Confidence 777777665 788888876
No 269
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.94 E-value=4.4e-07 Score=82.52 Aligned_cols=216 Identities=15% Similarity=0.131 Sum_probs=133.1
Q ss_pred CCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEE-
Q 009993 203 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVY- 280 (520)
Q Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~- 280 (520)
+|.|..||..++... + ...+..-.....+... +++.+++++.++.+..||..+|+.+..+.....+.
T Consensus 2 ~g~l~~~d~~tG~~~-W----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~ 70 (238)
T PF13360_consen 2 DGTLSALDPRTGKEL-W----------SYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISG 70 (238)
T ss_dssp TSEEEEEETTTTEEE-E----------EEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGS
T ss_pred CCEEEEEECCCCCEE-E----------EEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccc
Confidence 577888888776421 1 1111111222332234 88889999999999999999999988877433222
Q ss_pred -EEeeCCCEEEEEcCCeEEEEECCCCeeeEEe-eccc--ccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceee
Q 009993 281 -GLAPHDTTVASTSGSDVYIWDTNSGCLLTVV-NGAH--VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL 356 (520)
Q Consensus 281 -~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~-~~~~--~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~ 356 (520)
-+..++..++...++.++.+|..+|+.+... .... ............++.++++..++.|..+|++++ ..
T Consensus 71 ~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG------~~ 144 (238)
T PF13360_consen 71 APVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG------KL 144 (238)
T ss_dssp GEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT------EE
T ss_pred eeeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC------cE
Confidence 1234445545555889999999999998884 3211 011122222234888899989999999999999 44
Q ss_pred eeeecCCcCC-----------EEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCccee
Q 009993 357 VATWIPHTGP-----------VNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECN 425 (520)
Q Consensus 357 ~~~~~~h~~~-----------v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (520)
+......... ...+.+....++.++.++.+.-+|+.++..... .. ....
T Consensus 145 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~-------------------~~-~~~~ 204 (238)
T PF13360_consen 145 LWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWS-------------------KP-ISGI 204 (238)
T ss_dssp EEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEE-------------------EC-SS-E
T ss_pred EEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEE-------------------ec-CCCc
Confidence 4444332211 133444555888888888644449888531110 00 0111
Q ss_pred eEEEEecCCEEEEecCCCeEEEEeCCchHh
Q 009993 426 LLSVDIGADRIVCGGEEGIVRIWNFSQAFE 455 (520)
Q Consensus 426 v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~ 455 (520)
......++..|+.++.++.|..||+.+++.
T Consensus 205 ~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 205 YSLPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp CECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred cCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 112456677888888999999999998864
No 270
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=1.8e-06 Score=85.03 Aligned_cols=117 Identities=17% Similarity=0.165 Sum_probs=83.8
Q ss_pred EEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-CEEEEEeC----------CCcEEEEeCCcccccC
Q 009993 330 FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAG----------DGKLSLIDVRKLLRSG 398 (520)
Q Consensus 330 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~----------dg~i~vwd~~~~~~~~ 398 (520)
+++.|...|+|.++|+.++ .....+..|++.|.++.|-+ ..|++.+. -+.+.|-|++++....
T Consensus 439 LvAvGT~sGTV~vvdvst~------~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~ 512 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTN------AVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKR 512 (1062)
T ss_pred eEEeecCCceEEEEEecch------hhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccc
Confidence 5788999999999999999 67788889999999999965 34554433 3567788888864321
Q ss_pred CCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhccc
Q 009993 399 RPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGI 466 (520)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~ 466 (520)
-... +.-......+..++..+.+|+..-.|.-+.+||+.+...++....+.+.+
T Consensus 513 fR~l--------------~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~i 566 (1062)
T KOG1912|consen 513 FRGL--------------QKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLI 566 (1062)
T ss_pred cccC--------------CCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcE
Confidence 1000 00111223455566677899999999999999999888888776666543
No 271
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.92 E-value=5.2e-07 Score=77.75 Aligned_cols=219 Identities=13% Similarity=0.059 Sum_probs=139.2
Q ss_pred CCeEEEEECCCCc--EEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCe
Q 009993 163 DSIVRMWHLEDGF--SIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPI 240 (520)
Q Consensus 163 dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 240 (520)
...|-+|++-+.. .+...++-.-.-.++...-.+|+.|+..|...+|...+..... .....|...|
T Consensus 51 t~sv~i~~~y~N~~~iv~~y~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~------------~~cd~snn~v 118 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFYTGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHL------------YQCDVSNNDV 118 (344)
T ss_pred eeeeEeccccCCchhhEEeeecccccchHhhccccEEEeccccceeeeecccCcccce------------eeecccccch
Confidence 3446667665432 2222233222222333455689999999999999987654222 2222333333
Q ss_pred EEE---EEcCCEEEEEecCCeEEEEECCCCcEEEEeeecc--CEEEE--eeCCCEEEEEc-CCeEEEEECCCC-e-eeEE
Q 009993 241 TSL---ALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSD--WVYGL--APHDTTVASTS-GSDVYIWDTNSG-C-LLTV 310 (520)
Q Consensus 241 ~~l---~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~--~v~~~--~~~~~~l~~~~-d~~i~iwd~~~~-~-~~~~ 310 (520)
+-+ +-..-.+..++.|.++++.+++.+...... |.. .+.++ +++++++++.+ ...|..|.+... + .+..
T Consensus 119 ~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~-h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~ 197 (344)
T KOG4532|consen 119 TLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV-HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI 197 (344)
T ss_pred hhhhhhcccccceeeccCCcceeEEEEecCccccee-eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee
Confidence 222 113345778889999999988654433222 222 24444 48999999988 577888887653 2 2332
Q ss_pred eecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC----CEEEEEeCCCcE
Q 009993 311 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF----PWLVSAAGDGKL 386 (520)
Q Consensus 311 ~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i 386 (520)
........-.+..|+.....+|++..||++.|||++....+.. ....+-..|.+.++.+.|++ ++|+..-.-+.+
T Consensus 198 ~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~-~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~ 276 (344)
T KOG4532|consen 198 YEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA-EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRV 276 (344)
T ss_pred EecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh-hhcccCCCCCCceEEEEecCCCcceEEEEecCcceE
Confidence 2223444566888999999999999999999999998743221 12223345899999999985 577777777899
Q ss_pred EEEeCCccc
Q 009993 387 SLIDVRKLL 395 (520)
Q Consensus 387 ~vwd~~~~~ 395 (520)
.+-|+++..
T Consensus 277 hv~D~R~~~ 285 (344)
T KOG4532|consen 277 HVVDTRNYV 285 (344)
T ss_pred EEEEcccCc
Confidence 999999863
No 272
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.91 E-value=2.3e-08 Score=85.48 Aligned_cols=232 Identities=19% Similarity=0.165 Sum_probs=134.6
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEE------------EeCCC--CceEEEEecCCCEEEEEeCCCcEEEEE
Q 009993 145 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA------------SSKPL--GCTIRAVAADKKLLVAGGTDGFIHCWR 210 (520)
Q Consensus 145 V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~------------~~~~~--~~~v~~~~~~~~~l~sg~~dg~i~vwd 210 (520)
|+.+.+.. ...|+++..++.+......++.++. .+..| ..+...++.-++.++++..||.+.+.+
T Consensus 39 ~~~~~~v~-~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSA-EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechh-hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 56666653 3457777777776666554443322 22211 123334445567899999999999998
Q ss_pred cccCcceeeeccCCccccceEEec-cCCCCeEEEEE--cCCEEEEEec-----CCeEEEEECCCCcEEEEe-eeccCEEE
Q 009993 211 AVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLAL--DLTRIYSGSW-----DMTVRVWDRALLKCLKVL-RHSDWVYG 281 (520)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~s~s~-----dg~v~iwd~~~~~~~~~~-~~~~~v~~ 281 (520)
.+.... ...+.. .|.+ -.+.++ .++.+.++.- -+..+.|+++..+.+..- .....|.+
T Consensus 118 ~~~~~~------------~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 118 TDKDLA------------LMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred chHHHh------------hhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 754210 000000 0111 111111 3344443322 123455555433222111 13344777
Q ss_pred Ee--eCC-CEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecC-CCCEEEEEeCCCeEEEEEcccCccc-----
Q 009993 282 LA--PHD-TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH-TGDFLFTGGEDGAIHMYEIINDCTE----- 351 (520)
Q Consensus 282 ~~--~~~-~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~----- 351 (520)
++ |.. +.+++|+ ||.+-+||.+.......+...|..+++.+.|+| ++..|+++++||.+-.||..+....
T Consensus 185 l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~ 264 (319)
T KOG4714|consen 185 LCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQA 264 (319)
T ss_pred hhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCcc
Confidence 76 444 4555566 899999999998766666668999999999999 6678999999999999998743110
Q ss_pred ------------cc-eeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEe
Q 009993 352 ------------AN-VLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLID 390 (520)
Q Consensus 352 ------------~~-~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd 390 (520)
.. +.....+......|+++...+..|++|+.-+.|++++
T Consensus 265 s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 265 SVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 00 0001111122334666666678999999988888875
No 273
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.89 E-value=5.4e-07 Score=89.15 Aligned_cols=156 Identities=21% Similarity=0.158 Sum_probs=95.6
Q ss_pred EeccCCCCeEEEEE--cCCEEEEEecC---CeEEEEECCCCcEEEEeeeccCE--EEEeeCCCEEEE-Ec-CCe--EEEE
Q 009993 232 RLWEHEGPITSLAL--DLTRIYSGSWD---MTVRVWDRALLKCLKVLRHSDWV--YGLAPHDTTVAS-TS-GSD--VYIW 300 (520)
Q Consensus 232 ~~~~h~~~v~~l~~--~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~-~~-d~~--i~iw 300 (520)
.+..+...+.+.+| +++.|+..+.+ ..|.+||+.+++..........+ ..++|+++.++. .+ ++. |+++
T Consensus 190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV 269 (427)
T ss_pred EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence 34466778888888 77888776643 46999999988765443333333 345599988865 44 665 5555
Q ss_pred ECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC-CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEE
Q 009993 301 DTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWL 377 (520)
Q Consensus 301 d~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l 377 (520)
|+..+. ...+. .+........|+|||+.|+..+. +|...+|.+..... ....+ ++.+ .......|+| ++|
T Consensus 270 d~~~~~-~~~lt-~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g--~~~~l-t~~g--~~~~~~~~SpDG~~I 342 (427)
T PRK02889 270 NADGSG-LRRLT-QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG--AAQRV-TFTG--SYNTSPRISPDGKLL 342 (427)
T ss_pred ECCCCC-cEECC-CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC--ceEEE-ecCC--CCcCceEECCCCCEE
Confidence 565554 33443 24455667889999998876554 56667776543211 00111 2222 2233456765 677
Q ss_pred EEEeCCC---cEEEEeCCcc
Q 009993 378 VSAAGDG---KLSLIDVRKL 394 (520)
Q Consensus 378 ~s~s~dg---~i~vwd~~~~ 394 (520)
+..+.++ .|.+||+.++
T Consensus 343 a~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 343 AYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred EEEEccCCcEEEEEEECCCC
Confidence 7766554 5999998764
No 274
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.88 E-value=2.2e-08 Score=99.80 Aligned_cols=181 Identities=18% Similarity=0.246 Sum_probs=134.6
Q ss_pred cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEE
Q 009993 246 DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLA 323 (520)
Q Consensus 246 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~ 323 (520)
++..++.|+....+..+|+++.+..+... ..+.|.-+..+++.+.+|. .|+|.+-|+++.+.+.++. +|.+.|..+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~-aHs~siSDfD 224 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFD-AHSGSISDFD 224 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeee-ccccceeeee
Confidence 66778889888889999999988888777 3335888889999999999 8999999999999999998 6999998766
Q ss_pred ecCCCCEEEEEeC---------CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeC
Q 009993 324 RSHTGDFLFTGGE---------DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDV 391 (520)
Q Consensus 324 ~s~~~~~l~tg~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~ 391 (520)
. .|+.|++++. |.-|+|||++... .+..+.-+.++ .-+.|.| ..+++++..|...+-|.
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr------al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~ 295 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR------ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDT 295 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhhh------ccCCcccccCc-hhhhhcccccceEEEEecccceeeccc
Confidence 5 6899998875 5568999999883 33333333333 4566776 58899999999999985
Q ss_pred CcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEe
Q 009993 392 RKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWN 449 (520)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd 449 (520)
.+...+. .... .....+.....++++.+++.++.|..+|.|.+|.
T Consensus 296 ~~lsNP~--------~~~~-----~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 296 ATLSNPP--------AGVK-----MVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccCCCc--------ccee-----EEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 4321110 0000 0011122245567777788999999999999997
No 275
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.87 E-value=1.1e-05 Score=77.37 Aligned_cols=241 Identities=15% Similarity=0.139 Sum_probs=148.3
Q ss_pred ccEEEEEEccCCCEEEEEeC----CCeEEEEECCCC--c--EEEEeC--CCCceEEEEecCCCEEEEEeC-CCcEEEEEc
Q 009993 143 EAVLTVFVLASAKLLFTSGY----DSIVRMWHLEDG--F--SIASSK--PLGCTIRAVAADKKLLVAGGT-DGFIHCWRA 211 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~sgs~----dg~v~vwd~~~~--~--~~~~~~--~~~~~v~~~~~~~~~l~sg~~-dg~i~vwd~ 211 (520)
.....++++|++++|+++.. ++.|..|++... . .+.... +....-.++.+++++|+++.. +|.|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 34466788999999999877 578999988764 2 233332 333344566799999988875 899999998
Q ss_pred ccCcceeeeccCCccccceEEe--------ccCCCCeEEEEE--cCCEEEEEec-CCeEEEEECCCCc--EEE--Eee--
Q 009993 212 VEVLPHLFDISGSEKQNTQFRL--------WEHEGPITSLAL--DLTRIYSGSW-DMTVRVWDRALLK--CLK--VLR-- 274 (520)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~--------~~h~~~v~~l~~--~~~~l~s~s~-dg~v~iwd~~~~~--~~~--~~~-- 274 (520)
........ ....... ..-.....++.+ +++++++... ...|.+|++.... ... .+.
T Consensus 117 ~~~g~l~~-------~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~ 189 (345)
T PF10282_consen 117 DDDGSLGE-------VVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVP 189 (345)
T ss_dssp CTTSEEEE-------EEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECS
T ss_pred cCCcccce-------eeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccc
Confidence 76311000 0000000 012345667777 6677776543 3579999987654 322 222
Q ss_pred eccCEE--EEeeCCCEEEEEc--CCeEEEEECC--CCe--eeEEeec---cc--ccceEEEEecCCCCEEEEEe-CCCeE
Q 009993 275 HSDWVY--GLAPHDTTVASTS--GSDVYIWDTN--SGC--LLTVVNG---AH--VGNTKSLARSHTGDFLFTGG-EDGAI 340 (520)
Q Consensus 275 ~~~~v~--~~~~~~~~l~~~~--d~~i~iwd~~--~~~--~~~~~~~---~~--~~~i~~l~~s~~~~~l~tg~-~dg~i 340 (520)
....-. .+.++++++++.. ++.|.++++. ++. .+..+.. +. ......+.++|+|++|+++. ..+.|
T Consensus 190 ~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 190 PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 223333 3458888887776 7899999988 443 2222221 11 12578899999999988765 46789
Q ss_pred EEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEe-CCCcEEEEeCC
Q 009993 341 HMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAA-GDGKLSLIDVR 392 (520)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~~ 392 (520)
.+|++.... ..+..+..+.......+.+.++| ++|+++. .++.|.+|++.
T Consensus 270 ~vf~~d~~~--g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 270 SVFDLDPAT--GTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEECTTT--TTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEecCC--CceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 999994321 11233444433344578999955 6777776 56789999875
No 276
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=3.9e-07 Score=88.76 Aligned_cols=213 Identities=15% Similarity=0.155 Sum_probs=131.5
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc---------------EEEEeCCCCceEEEEe--cCCCEEEEEeCCC
Q 009993 142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF---------------SIASSKPLGCTIRAVA--ADKKLLVAGGTDG 204 (520)
Q Consensus 142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~---------------~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg 204 (520)
.....|+.|+....+++.|+.||.++|-.+.+.. .-.++.+|..+|.-+. .+...|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 3456899999999999999999999999886531 1134678988877665 5667888999999
Q ss_pred cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeE--------EEEECC---------
Q 009993 205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTV--------RVWDRA--------- 265 (520)
Q Consensus 205 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v--------~iwd~~--------- 265 (520)
.|.||-+-.+.-. ....-....+.|.+++| +|..+.....||.| +||.-+
T Consensus 94 lIiVWmlykgsW~-----------EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv 162 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWC-----------EEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHV 162 (1189)
T ss_pred eEEEEeeecccHH-----------HHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccce
Confidence 9999987655311 11111123455666666 55555444444444 344311
Q ss_pred --------------CCcEE-----------------EEee-----eccCEEE----------EeeCCCEEEEEc-CCeEE
Q 009993 266 --------------LLKCL-----------------KVLR-----HSDWVYG----------LAPHDTTVASTS-GSDVY 298 (520)
Q Consensus 266 --------------~~~~~-----------------~~~~-----~~~~v~~----------~~~~~~~l~~~~-d~~i~ 298 (520)
.+++. .... .+..+.. +.|+...++++. .|.+.
T Consensus 163 ~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Q 242 (1189)
T KOG2041|consen 163 LWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQ 242 (1189)
T ss_pred eecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceeh
Confidence 11100 0000 0011111 124556677777 67777
Q ss_pred EEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCC---------eEEEEEcccCccccceeeeeeecCCcCCEEE
Q 009993 299 IWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG---------AIHMYEIINDCTEANVLLVATWIPHTGPVNS 369 (520)
Q Consensus 299 iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg---------~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~ 369 (520)
|-.-.+......+. ..-.+....|+++|..|++++.|. .|.+|..-. ..+.++......|++
T Consensus 243 iMR~eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G-------~i~gtlkvpg~~It~ 313 (1189)
T KOG2041|consen 243 IMRSENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG-------HIVGTLKVPGSCITG 313 (1189)
T ss_pred hhhhcCCCCCeEEe--cccEeecceecCCCcEEEEccCcccccCccccceEEEeccch-------hheEEEecCCceeee
Confidence 76554444444443 235688899999999999987643 455554322 356677777778888
Q ss_pred EEecC
Q 009993 370 LAFEF 374 (520)
Q Consensus 370 l~~~~ 374 (520)
++|.+
T Consensus 314 lsWEg 318 (1189)
T KOG2041|consen 314 LSWEG 318 (1189)
T ss_pred eEEcC
Confidence 88854
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.85 E-value=5.8e-06 Score=90.06 Aligned_cols=247 Identities=10% Similarity=0.010 Sum_probs=143.3
Q ss_pred EEEEccC-CCEEEEEeCCCeEEEEECCCCcEEEEeCC--C--------------CceEEEEecCCCEEEEEe-CCCcEEE
Q 009993 147 TVFVLAS-AKLLFTSGYDSIVRMWHLEDGFSIASSKP--L--------------GCTIRAVAADKKLLVAGG-TDGFIHC 208 (520)
Q Consensus 147 ~l~~~~~-~~~l~sgs~dg~v~vwd~~~~~~~~~~~~--~--------------~~~v~~~~~~~~~l~sg~-~dg~i~v 208 (520)
.++++++ +.++++-+.++.|++||.. +..+..+.+ . ...-.++.++++.|+++. .++.|++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 5778764 6677777888999999975 444433322 0 112235556777665554 4577999
Q ss_pred EEcccCcceeeeccCCccc---c-ceEEeccCCCCeEEEEEc---CCEEEEEecCCeEEEEECCCCcEEEEeee------
Q 009993 209 WRAVEVLPHLFDISGSEKQ---N-TQFRLWEHEGPITSLALD---LTRIYSGSWDMTVRVWDRALLKCLKVLRH------ 275 (520)
Q Consensus 209 wd~~~~~~~~~~~~~~~~~---~-~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~v~iwd~~~~~~~~~~~~------ 275 (520)
+|..++....+.-.+.... . ..... ..-.....++++ +..+++.+.++.|++||..++........
T Consensus 651 id~~~~~V~tlag~G~~g~~~~gg~~~~~-~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~ 729 (1057)
T PLN02919 651 IDFVNETVRTLAGNGTKGSDYQGGKKGTS-QVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNL 729 (1057)
T ss_pred EecCCCEEEEEeccCcccCCCCCChhhhH-hhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccC
Confidence 9987664322211110000 0 00000 001123467773 34566667789999999987654321110
Q ss_pred ---c------cCE--EEEeeCCCEEEEEc--CCeEEEEECCCCeeeEEee-----------cc---------cccceEEE
Q 009993 276 ---S------DWV--YGLAPHDTTVASTS--GSDVYIWDTNSGCLLTVVN-----------GA---------HVGNTKSL 322 (520)
Q Consensus 276 ---~------~~v--~~~~~~~~~l~~~~--d~~i~iwd~~~~~~~~~~~-----------~~---------~~~~i~~l 322 (520)
. ... .++++++..++++. ++.|++||+.++....... .+ .......+
T Consensus 730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv 809 (1057)
T PLN02919 730 NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV 809 (1057)
T ss_pred CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence 0 111 23447777555544 6899999998765321110 00 01134688
Q ss_pred EecCCCCEEEEEeCCCeEEEEEcccCccccceee-e------eeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993 323 ARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL-V------ATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 323 ~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~------~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 393 (520)
+++++|+++++-+.++.|++||..++........ . ....+.-.....|++++ +.+++-+.++.|++||+.+
T Consensus 810 avd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 810 LCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred eEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 9999999988889999999999987621100000 0 00111223567888864 6788888899999999987
Q ss_pred cc
Q 009993 394 LL 395 (520)
Q Consensus 394 ~~ 395 (520)
..
T Consensus 890 ~~ 891 (1057)
T PLN02919 890 GE 891 (1057)
T ss_pred Cc
Confidence 53
No 278
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.82 E-value=7.1e-08 Score=87.73 Aligned_cols=146 Identities=16% Similarity=0.144 Sum_probs=98.1
Q ss_pred CCEEEEEecCCeEEEEECCCCc----EEEEee---eccCEEEEeeCCCEEEEEcC---CeEEEEECCCCeeeEEeecccc
Q 009993 247 LTRIYSGSWDMTVRVWDRALLK----CLKVLR---HSDWVYGLAPHDTTVASTSG---SDVYIWDTNSGCLLTVVNGAHV 316 (520)
Q Consensus 247 ~~~l~s~s~dg~v~iwd~~~~~----~~~~~~---~~~~v~~~~~~~~~l~~~~d---~~i~iwd~~~~~~~~~~~~~~~ 316 (520)
+.+++.+..+....++++.... ++.... ....+..+..+...+++-.- ..+.+|....+.+...+ ||-
T Consensus 74 ~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~l--Ghv 151 (390)
T KOG3914|consen 74 GRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPIL--GHV 151 (390)
T ss_pred ceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhh--hhh
Confidence 3556666666665566654332 222222 22223333334444443333 44556665555555444 799
Q ss_pred cceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeee-ecCCcCCEEEEEecC-CEEEEEeCCCcEEEEeCCcc
Q 009993 317 GNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT-WIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 317 ~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~ 394 (520)
..++.++++||+++++++..|..|++-...... .+.. ..||..-|..++.-+ ..|++||.|++|++||+.++
T Consensus 152 Sml~dVavS~D~~~IitaDRDEkIRvs~ypa~f------~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 152 SMLLDVAVSPDDQFIITADRDEKIRVSRYPATF------VIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSG 225 (390)
T ss_pred hhhheeeecCCCCEEEEecCCceEEEEecCccc------chhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccC
Confidence 999999999999999999999999998876652 2332 457999999999955 56799999999999999998
Q ss_pred cccCCC
Q 009993 395 LRSGRP 400 (520)
Q Consensus 395 ~~~~~~ 400 (520)
......
T Consensus 226 k~L~t~ 231 (390)
T KOG3914|consen 226 KLLDTC 231 (390)
T ss_pred Cccccc
Confidence 666433
No 279
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.77 E-value=1.5e-07 Score=94.05 Aligned_cols=179 Identities=17% Similarity=0.241 Sum_probs=134.9
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEE
Q 009993 153 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR 232 (520)
Q Consensus 153 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 232 (520)
++..++-|+.-..+..+|+.+.+..+...-....|.-+..+++.+.+|...|+|.+-|..+ ...+.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s-------------~~~iht 212 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNS-------------FETIHT 212 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCc-------------Cceeee
Confidence 3456777877788889999988877776655555777788999999999999999998765 357888
Q ss_pred eccCCCCeEEEEEcCCEEEEEec---------CCeEEEEECCCCcEEEEee-eccC-EEEEee-CCCEEEEEc-CCeEEE
Q 009993 233 LWEHEGPITSLALDLTRIYSGSW---------DMTVRVWDRALLKCLKVLR-HSDW-VYGLAP-HDTTVASTS-GSDVYI 299 (520)
Q Consensus 233 ~~~h~~~v~~l~~~~~~l~s~s~---------dg~v~iwd~~~~~~~~~~~-~~~~-v~~~~~-~~~~l~~~~-d~~i~i 299 (520)
+..|++.|.++...|+.|++++. |..|+|||++..+.+.-+. +.++ ...+.| -...+++++ .|...+
T Consensus 213 ~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~ 292 (1118)
T KOG1275|consen 213 FDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQF 292 (1118)
T ss_pred eeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceee
Confidence 99999999999999999999986 5568999999887776655 2221 222222 233445555 899999
Q ss_pred EECCC---C-eeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEc
Q 009993 300 WDTNS---G-CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI 345 (520)
Q Consensus 300 wd~~~---~-~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~ 345 (520)
.|..+ . ..+..+. .....+.+++++++++.++.|..+|.|.+|.-
T Consensus 293 vd~~~lsNP~~~~~~v~-p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 293 VDTATLSNPPAGVKMVN-PNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ccccccCCCccceeEEc-cCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 98433 2 1122222 34556999999999999999999999999983
No 280
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.76 E-value=1.1e-08 Score=63.25 Aligned_cols=37 Identities=16% Similarity=0.445 Sum_probs=35.0
Q ss_pred hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEE
Q 009993 134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWH 170 (520)
Q Consensus 134 ~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd 170 (520)
+++++++|.+.|++|+|+|++.+|++|+.|++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3678899999999999999999999999999999997
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.76 E-value=1.1e-05 Score=87.88 Aligned_cols=262 Identities=10% Similarity=0.038 Sum_probs=138.8
Q ss_pred EEec-CCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEe-cCCeEEEEEC
Q 009993 189 AVAA-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDR 264 (520)
Q Consensus 189 ~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s-~dg~v~iwd~ 264 (520)
++.+ ++..+++-+.++.|.++|............+......-..-..+-.....+++ +++.|+.+. ..+.|+.+|.
T Consensus 574 avd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~ 653 (1057)
T PLN02919 574 AIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDF 653 (1057)
T ss_pred EEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEec
Confidence 4554 45566777778889999875432111100000000000000011233567788 356665554 4578999998
Q ss_pred CCCcEEEEeee-------------------ccC-EEEEee-CCCEEEEEc-CCeEEEEECCCCeeeEEeecc--------
Q 009993 265 ALLKCLKVLRH-------------------SDW-VYGLAP-HDTTVASTS-GSDVYIWDTNSGCLLTVVNGA-------- 314 (520)
Q Consensus 265 ~~~~~~~~~~~-------------------~~~-v~~~~~-~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~-------- 314 (520)
.++.. .++.. ..+ -.++.+ ++.++++.. ++.|++||..++........+
T Consensus 654 ~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~ 732 (1057)
T PLN02919 654 VNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGS 732 (1057)
T ss_pred CCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCC
Confidence 77643 22210 011 124446 445555555 789999999887543211100
Q ss_pred -----cccceEEEEecCCCCE-EEEEeCCCeEEEEEcccCccccce-------eeeeeecCC--------cCCEEEEEec
Q 009993 315 -----HVGNTKSLARSHTGDF-LFTGGEDGAIHMYEIINDCTEANV-------LLVATWIPH--------TGPVNSLAFE 373 (520)
Q Consensus 315 -----~~~~i~~l~~s~~~~~-l~tg~~dg~i~iwd~~~~~~~~~~-------~~~~~~~~h--------~~~v~~l~~~ 373 (520)
.......++++|+++. +++-+.++.|++||+.++...... .....+..+ -....+++++
T Consensus 733 ~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd 812 (1057)
T PLN02919 733 SGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA 812 (1057)
T ss_pred ccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEe
Confidence 1124567999999984 455666799999999875310000 000011101 1124577776
Q ss_pred C--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCC
Q 009993 374 F--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFS 451 (520)
Q Consensus 374 ~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~ 451 (520)
+ +.+++-+.++.|++||..+.........+.... . .............-.+++.+++.+++-+.+++|++||+.
T Consensus 813 ~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~--~--dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 813 KDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGF--K--DGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred CCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCC--C--CCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 5 577788889999999997643221110010000 0 000000000112234666778888888999999999998
Q ss_pred chHh
Q 009993 452 QAFE 455 (520)
Q Consensus 452 ~~~~ 455 (520)
++..
T Consensus 889 ~~~~ 892 (1057)
T PLN02919 889 KGEA 892 (1057)
T ss_pred CCcc
Confidence 8754
No 282
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=2.3e-06 Score=81.14 Aligned_cols=239 Identities=15% Similarity=0.156 Sum_probs=139.0
Q ss_pred ccEEEEEEccCCCEEEEEeC-----------CCeEEEEECCCCcEEEEeCCC-----CceEEEEecCCCEEEEEeCCCcE
Q 009993 143 EAVLTVFVLASAKLLFTSGY-----------DSIVRMWHLEDGFSIASSKPL-----GCTIRAVAADKKLLVAGGTDGFI 206 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~sgs~-----------dg~v~vwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~l~sg~~dg~i 206 (520)
..|.-+.|||..+||+|=|. ...++|||+.+|...+.+... .-++..++.|++++|--.. ..|
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~si 328 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSI 328 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceE
Confidence 35788999999999999764 257999999999988887652 2356677889998887665 457
Q ss_pred EEEEcccCcceeeec-----cC--------------------Ccc-----------ccceEEeccCCCCeEEEEE--cCC
Q 009993 207 HCWRAVEVLPHLFDI-----SG--------------------SEK-----------QNTQFRLWEHEGPITSLAL--DLT 248 (520)
Q Consensus 207 ~vwd~~~~~~~~~~~-----~~--------------------~~~-----------~~~~~~~~~h~~~v~~l~~--~~~ 248 (520)
.|++...-. +++. .+ ... ...+.+..-|+-.=..|.| +|+
T Consensus 329 sIyEtpsf~--lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gd 406 (698)
T KOG2314|consen 329 SIYETPSFM--LLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGD 406 (698)
T ss_pred EEEecCcee--eecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCc
Confidence 788754311 1000 00 000 0000000001101112223 445
Q ss_pred EEEEEe----------cCCeEEEEECCCCc-EEEEeeeccCEEEEe--eCCCEEEEEc----CCeEEEEECCC-C---ee
Q 009993 249 RIYSGS----------WDMTVRVWDRALLK-CLKVLRHSDWVYGLA--PHDTTVASTS----GSDVYIWDTNS-G---CL 307 (520)
Q Consensus 249 ~l~s~s----------~dg~v~iwd~~~~~-~~~~~~~~~~v~~~~--~~~~~l~~~~----d~~i~iwd~~~-~---~~ 307 (520)
+|+.-- .-..+.|+.++... .+........|..++ |.|+.+++-+ ..++.+|-+++ . ..
T Consensus 407 yLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l 486 (698)
T KOG2314|consen 407 YLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL 486 (698)
T ss_pred EEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh
Confidence 544311 11123344443322 222333556666666 8888776655 26788888873 2 23
Q ss_pred eEEeecccccceEEEEecCCCCEEEEE---eCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeC
Q 009993 308 LTVVNGAHVGNTKSLARSHTGDFLFTG---GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG 382 (520)
Q Consensus 308 ~~~~~~~~~~~i~~l~~s~~~~~l~tg---~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~ 382 (520)
+..+. ....+.+.|+|.|++++.+ |..|.+.++|+.... ...+-.......+.+.|+| +|+++++.
T Consensus 487 Vk~~d---k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~------~k~~~~~eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 487 VKELD---KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYAD------LKDTASPEHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred hhhhc---ccccceEEEcCCCcEEEEEEecccccceEEEecchhh------hhhccCccccccccceECCCCCEEEEeee
Confidence 33332 3457889999999998875 457889999987531 1111112222457788987 78888876
Q ss_pred ------CCcEEEEeCCc
Q 009993 383 ------DGKLSLIDVRK 393 (520)
Q Consensus 383 ------dg~i~vwd~~~ 393 (520)
|.--++|++..
T Consensus 558 ~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 558 SWRHKVDNGYRIFTFQG 574 (698)
T ss_pred hhhhccccceEEEEeec
Confidence 45566777664
No 283
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.74 E-value=7.4e-07 Score=87.70 Aligned_cols=288 Identities=12% Similarity=0.016 Sum_probs=176.3
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--c------------CCCEEEEEeCCCcEEEEE
Q 009993 145 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--A------------DKKLLVAGGTDGFIHCWR 210 (520)
Q Consensus 145 V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~------------~~~~l~sg~~dg~i~vwd 210 (520)
-.++.|+|.| ++|-|+. ..|.|-|..+-+.+.++.-|...|+.+. | ..-.|+++...|.|.+||
T Consensus 18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 4677888866 5666664 5688999999999999998888877653 1 123677888889999999
Q ss_pred cccCcceeeeccCCccccceEEeccCCCCeEEEEE-----cC-CEEEEEecCCeEEEEECCCCcEEEEeeeccCE-EEEe
Q 009993 211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-----DL-TRIYSGSWDMTVRVWDRALLKCLKVLRHSDWV-YGLA 283 (520)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-----~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v-~~~~ 283 (520)
...+. ....+..|..++..++| +. ..|++-....++.+|+..+|+..........+ .|+.
T Consensus 96 ~~~~s-------------~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~ 162 (1062)
T KOG1912|consen 96 FVLAS-------------VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFR 162 (1062)
T ss_pred ehhhh-------------hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeee
Confidence 87652 44556778999999999 23 55777777789999999999998887744444 4455
Q ss_pred ---eCCCEEEE-EcCCeEEEEECCC-------CeeeEEeeccccc-------------------------ceEEEEecCC
Q 009993 284 ---PHDTTVAS-TSGSDVYIWDTNS-------GCLLTVVNGAHVG-------------------------NTKSLARSHT 327 (520)
Q Consensus 284 ---~~~~~l~~-~~d~~i~iwd~~~-------~~~~~~~~~~~~~-------------------------~i~~l~~s~~ 327 (520)
.+.+.+.. ++.|.+.+.+.-. ++..+ +...|.. ....++|+|.
T Consensus 163 ~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q-I~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~ 241 (1062)
T KOG1912|consen 163 VDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ-ITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPH 241 (1062)
T ss_pred eCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEE-EecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChh
Confidence 44454444 4477777766422 12222 1112221 0113467776
Q ss_pred CCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe--cC--CEEEEEeCCCcEEEEeCCcccccCCCCCC
Q 009993 328 GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--EF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSG 403 (520)
Q Consensus 328 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 403 (520)
-+.++-......+.++|++-. .++....-..+.+.-+.+ +| +.|+++-.||.+.+|--+.....++....
T Consensus 242 ~rn~lfi~~prellv~dle~~------~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~ 315 (1062)
T KOG1912|consen 242 WRNILFITFPRELLVFDLEYE------CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNA 315 (1062)
T ss_pred hhceEEEEeccceEEEcchhh------ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccch
Confidence 655555556778999999887 445444333444444444 44 68999999999999987654332221100
Q ss_pred CceeeeeecCCCcccccCcceeeEEEEec-CCEEEEecCCCeEEEEeCCchH
Q 009993 404 KRVSRVIEVEPPQRMLHGFECNLLSVDIG-ADRIVCGGEEGIVRIWNFSQAF 454 (520)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~sg~~Dg~v~iwd~~~~~ 454 (520)
.-...+.+.....+........+....|. +..++.-=.+|.+.+|.+.+++
T Consensus 316 ~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~r 367 (1062)
T KOG1912|consen 316 SLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGR 367 (1062)
T ss_pred hhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCC
Confidence 00000000011111122222223333344 3344444457788899988654
No 284
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.73 E-value=5.1e-05 Score=68.85 Aligned_cols=264 Identities=11% Similarity=0.119 Sum_probs=156.9
Q ss_pred CCeEEEEECCCCcE-E---EEe-CCCCceEEEEecCCCEEEEEeCC---CcEEEEEccc--CcceeeeccCCccccceEE
Q 009993 163 DSIVRMWHLEDGFS-I---ASS-KPLGCTIRAVAADKKLLVAGGTD---GFIHCWRAVE--VLPHLFDISGSEKQNTQFR 232 (520)
Q Consensus 163 dg~v~vwd~~~~~~-~---~~~-~~~~~~v~~~~~~~~~l~sg~~d---g~i~vwd~~~--~~~~~~~~~~~~~~~~~~~ 232 (520)
++-|.+|++.+..- + ... ...+..-..+.++++.|+++..+ |.|..|.+.. |.... ...
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~-----------ln~ 83 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTF-----------LNR 83 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEE-----------eec
Confidence 46699999974321 1 111 22344556777999989888665 6677777654 32211 111
Q ss_pred eccCCCCeEEEEE--cCCEEEEEec-CCeEEEEECCC-CcEE---EEeeeccC----------EEE--EeeCCCEEEEEc
Q 009993 233 LWEHEGPITSLAL--DLTRIYSGSW-DMTVRVWDRAL-LKCL---KVLRHSDW----------VYG--LAPHDTTVASTS 293 (520)
Q Consensus 233 ~~~h~~~v~~l~~--~~~~l~s~s~-dg~v~iwd~~~-~~~~---~~~~~~~~----------v~~--~~~~~~~l~~~~ 293 (520)
......+-..+++ ++++++++.. -|.|.++-++. |... ..+.|.+. +-. +.|+++++++..
T Consensus 84 ~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D 163 (346)
T COG2706 84 QTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPD 163 (346)
T ss_pred cccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEee
Confidence 1112223356666 6678887765 47899998865 4332 33334433 333 349999999988
Q ss_pred --CCeEEEEECCCCeeeEEee--cccccceEEEEecCCCCEEEEEeC-CCeEEEEEcccCccccceeeeeee---cC---
Q 009993 294 --GSDVYIWDTNSGCLLTVVN--GAHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIINDCTEANVLLVATW---IP--- 362 (520)
Q Consensus 294 --d~~i~iwd~~~~~~~~~~~--~~~~~~i~~l~~s~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~~~~---~~--- 362 (520)
-..|.+|++..|.....-. -......+.|.|+|++++..+.++ +++|.+|...... ..+..++++ ..
T Consensus 164 LG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~--g~~~~lQ~i~tlP~dF~ 241 (346)
T COG2706 164 LGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAV--GKFEELQTIDTLPEDFT 241 (346)
T ss_pred cCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCC--ceEEEeeeeccCccccC
Confidence 4779999999775432211 124566789999999998887665 8999999998751 122222222 11
Q ss_pred CcCCEEEEEec--CCEEEEEeC-CCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEe
Q 009993 363 HTGPVNSLAFE--FPWLVSAAG-DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCG 439 (520)
Q Consensus 363 h~~~v~~l~~~--~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg 439 (520)
......+|..+ +++|.++.. ...|.++.+..... ....+ ......+..-.-+.+++++++|+++
T Consensus 242 g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g--------~L~~~-----~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 242 GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGG--------KLELV-----GITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCC--------EEEEE-----EEeccCCcCCccceeCCCCCEEEEE
Confidence 12234455554 467777654 34788887765310 00000 0111234445566777888877776
Q ss_pred cC-CCeEEEEeCCc
Q 009993 440 GE-EGIVRIWNFSQ 452 (520)
Q Consensus 440 ~~-Dg~v~iwd~~~ 452 (520)
+. +..|.+|..+.
T Consensus 309 ~q~sd~i~vf~~d~ 322 (346)
T COG2706 309 NQKSDNITVFERDK 322 (346)
T ss_pred ccCCCcEEEEEEcC
Confidence 65 45788888764
No 285
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.73 E-value=2.9e-06 Score=73.30 Aligned_cols=192 Identities=9% Similarity=-0.034 Sum_probs=124.6
Q ss_pred cCCEEEEEecCCeEEEEECCCCcEEEEee--eccCEEEEe----eCCCEEEEEcCCeEEEEECCCCeeeEEeecccccce
Q 009993 246 DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA----PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNT 319 (520)
Q Consensus 246 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~----~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i 319 (520)
...+|+.|+.-|...+|...+.+....+- +...|.-+. ..-..+++..|.++++.++.-+......... .-.+
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~-~~~~ 161 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ-NLTQ 161 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecc-ccce
Confidence 44689999999999999998765443332 333333222 2233444444888888888766544443211 1237
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeee-eecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccc
Q 009993 320 KSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA-TWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLR 396 (520)
Q Consensus 320 ~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~ 396 (520)
.+++++++++++++.+....|..|.+..... ..+. .....++.-.+..|+. ..+|+++.||++.|||++....
T Consensus 162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~se----y~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESE----YIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred eeeEEcCCCceEEEecCCCcceEEEeCCccc----eeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence 8999999999999999999999999987642 1222 2333344446667754 6899999999999999997643
Q ss_pred cCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC----EEEEecCCCeEEEEeCCchHhH
Q 009993 397 SGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD----RIVCGGEEGIVRIWNFSQAFEI 456 (520)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~l~sg~~Dg~v~iwd~~~~~~~ 456 (520)
+.... ......|.+.+..+.|+.. +|.-.-.-+.+.+-|++++...
T Consensus 238 pm~~~--------------sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 238 PMAEI--------------SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred chhhh--------------cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence 32211 1112336666666666522 4444444578999999987543
No 286
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.72 E-value=1.1e-05 Score=81.20 Aligned_cols=280 Identities=12% Similarity=0.072 Sum_probs=158.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeCCCCc------eEE--EEecCC-CEEEEEeCCCcEEEEEcccCcceeeeccCC
Q 009993 154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC------TIR--AVAADK-KLLVAGGTDGFIHCWRAVEVLPHLFDISGS 224 (520)
Q Consensus 154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~------~v~--~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~ 224 (520)
+..++.++.++.|.-.|..+|+.+..+..... .+. .+...+ ..++.++.+|.|..+|.++++.. +.....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~-W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQV-WKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEe-eeecCC
Confidence 55677788899999999999988877653322 111 111223 78888999999999999888532 111100
Q ss_pred ccccceEEeccCCCCe-EEEEEcCCEEEEEe---------cCCeEEEEECCCCcEEEEeeec-c----------------
Q 009993 225 EKQNTQFRLWEHEGPI-TSLALDLTRIYSGS---------WDMTVRVWDRALLKCLKVLRHS-D---------------- 277 (520)
Q Consensus 225 ~~~~~~~~~~~h~~~v-~~l~~~~~~l~s~s---------~dg~v~iwd~~~~~~~~~~~~~-~---------------- 277 (520)
.... ....+ .+..+.+..++.++ .++.+..+|..+++.+..+... .
T Consensus 140 ~~~~-------~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~ 212 (488)
T cd00216 140 DQVP-------PGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWG 212 (488)
T ss_pred CCcC-------cceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceec
Confidence 0000 00001 11223345566654 3688999999999988876521 1
Q ss_pred ----CE---EEEeeCCCEEEEEc-CC------------------eEEEEECCCCeeeEEeeccccc-----ceEEEEec-
Q 009993 278 ----WV---YGLAPHDTTVASTS-GS------------------DVYIWDTNSGCLLTVVNGAHVG-----NTKSLARS- 325 (520)
Q Consensus 278 ----~v---~~~~~~~~~l~~~~-d~------------------~i~iwd~~~~~~~~~~~~~~~~-----~i~~l~~s- 325 (520)
.+ ..+.+.+..++.++ ++ .|.-+|..+|+.+..+...+.. ......+.
T Consensus 213 ~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~ 292 (488)
T cd00216 213 PGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLAD 292 (488)
T ss_pred CCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEe
Confidence 01 12223456666665 54 6999999999998887532211 00001111
Q ss_pred ---CCCC---EEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEe------------------
Q 009993 326 ---HTGD---FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAA------------------ 381 (520)
Q Consensus 326 ---~~~~---~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s------------------ 381 (520)
-++. .++.++.+|.+..+|.++++ .+...... ...++.+|+.++.++
T Consensus 293 ~~~~~g~~~~~V~~g~~~G~l~ald~~tG~------~~W~~~~~---~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~ 363 (488)
T cd00216 293 IKPKDGKPVPAIVHAPKNGFFYVLDRTTGK------LISARPEV---EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKP 363 (488)
T ss_pred ccccCCCeeEEEEEECCCceEEEEECCCCc------EeeEeEee---ccccccCCceEEEccccccccCcccccCCCCCC
Confidence 1333 67888899999999999994 33322110 111233444444332
Q ss_pred CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHH
Q 009993 382 GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERR 459 (520)
Q Consensus 382 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~ 459 (520)
.+|.|.-.|+.++...-........ .. ...... .....+...++.|+.++.||.|+.+|..+|+.+.+.
T Consensus 364 ~~G~l~AlD~~tG~~~W~~~~~~~~-------~~-~~~g~~-~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 364 GKGGLAALDPKTGKVVWEKREGTIR-------DS-WNIGFP-HWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKF 432 (488)
T ss_pred CceEEEEEeCCCCcEeeEeeCCccc-------cc-cccCCc-ccCcceEecCCeEEEECCCCeEEEEECCCCceeeEE
Confidence 3567777787776433322111000 00 000000 001122345678999999999999999999877653
No 287
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.71 E-value=0.00012 Score=66.49 Aligned_cols=244 Identities=12% Similarity=0.110 Sum_probs=157.0
Q ss_pred hccccccEEEEEEccCCCEEEEEeCC---CeEEEEECCC--CcEE--E--EeCCCCceEEEEecCCCEEEEEeCC-CcEE
Q 009993 138 LYGHTEAVLTVFVLASAKLLFTSGYD---SIVRMWHLED--GFSI--A--SSKPLGCTIRAVAADKKLLVAGGTD-GFIH 207 (520)
Q Consensus 138 l~~h~~~V~~l~~~~~~~~l~sgs~d---g~v~vwd~~~--~~~~--~--~~~~~~~~v~~~~~~~~~l~sg~~d-g~i~ 207 (520)
+-.+.+.++-|+|+|+++.|+++-.+ |.|..|.++. |+.. . ...++...-.++++++++++++... |.|.
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 34667788999999999999988654 7788887764 4332 1 2344554556788999999988764 8899
Q ss_pred EEEcccCcceeeeccCCccccceEEeccCCCC----------eEEEEE--cCCEEEEEec-CCeEEEEECCCCcEEEEee
Q 009993 208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGP----------ITSLAL--DLTRIYSGSW-DMTVRVWDRALLKCLKVLR 274 (520)
Q Consensus 208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----------v~~l~~--~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~ 274 (520)
++-+.+... .........|.+. +....+ ++++|++... -..|.+|++..+.....-.
T Consensus 115 v~p~~~dG~----------l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~ 184 (346)
T COG2706 115 VYPLQADGS----------LQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADP 184 (346)
T ss_pred EEEcccCCc----------cccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccc
Confidence 998865311 1112122223333 555555 6678877753 2368999998776543322
Q ss_pred ----ecc--CEEEEeeCCCEEEEEc--CCeEEEEECCCC-ee---eEEe---ecc--cccceEEEEecCCCCEEEEEeC-
Q 009993 275 ----HSD--WVYGLAPHDTTVASTS--GSDVYIWDTNSG-CL---LTVV---NGA--HVGNTKSLARSHTGDFLFTGGE- 336 (520)
Q Consensus 275 ----~~~--~v~~~~~~~~~l~~~~--d~~i~iwd~~~~-~~---~~~~---~~~--~~~~i~~l~~s~~~~~l~tg~~- 336 (520)
... +=..+.|++++..+.. +++|.+|..... .. ++.+ +.. .....-++..+|+|++|.++..
T Consensus 185 ~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg 264 (346)
T COG2706 185 AEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRG 264 (346)
T ss_pred cccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCC
Confidence 222 2234458999988877 899999998773 22 2222 111 2335668889999999988754
Q ss_pred CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCC-CcEEEEeCCc
Q 009993 337 DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGD-GKLSLIDVRK 393 (520)
Q Consensus 337 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~d-g~i~vwd~~~ 393 (520)
...|.+|.+..... ....+.....+....+...+++ ++|+++..| ..|.+|.+..
T Consensus 265 ~dsI~~f~V~~~~g--~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 265 HDSIAVFSVDPDGG--KLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CCeEEEEEEcCCCC--EEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 24688888765521 1233444444555567777865 788888765 5689998765
No 288
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.70 E-value=9.7e-05 Score=79.20 Aligned_cols=305 Identities=14% Similarity=0.135 Sum_probs=177.3
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEE----ECCCCc--EEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEc--
Q 009993 140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMW----HLEDGF--SIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRA-- 211 (520)
Q Consensus 140 ~h~~~V~~l~~~~~~~~l~sgs~dg~v~vw----d~~~~~--~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~-- 211 (520)
...+.|.++.+.++...++.+..+|.|.+. +..+.. .+..+ ..+....+++||+..|+..+.++++.+-+-
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v-d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV-DSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE-cCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 445789999999999999999999999999 544432 22222 234445566799999999999988877532
Q ss_pred --cc---------Ccceeeec---------cCCcccc-------c------eEEeccCCCCeEEEEE--cCCEEEEEec-
Q 009993 212 --VE---------VLPHLFDI---------SGSEKQN-------T------QFRLWEHEGPITSLAL--DLTRIYSGSW- 255 (520)
Q Consensus 212 --~~---------~~~~~~~~---------~~~~~~~-------~------~~~~~~h~~~v~~l~~--~~~~l~s~s~- 255 (520)
-. +.....+. .|+.... + ...+. +...-..|+| ||.++++.+.
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEE
Confidence 11 00001110 0110000 0 01111 3445567889 8899888775
Q ss_pred --C---CeEEEEECCCCcEEEEee---eccCEEEEeeCCCEEEEEcC----CeEEEEECCCCeeeEEeec---ccccceE
Q 009993 256 --D---MTVRVWDRALLKCLKVLR---HSDWVYGLAPHDTTVASTSG----SDVYIWDTNSGCLLTVVNG---AHVGNTK 320 (520)
Q Consensus 256 --d---g~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~l~~~~d----~~i~iwd~~~~~~~~~~~~---~~~~~i~ 320 (520)
. ..++||+-+ |....+-. .-....+..|.|+++++..- ..|.+|.. +|-....|.. .....|.
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~ 308 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVI 308 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceee
Confidence 2 579999975 55443333 11122344499999999872 34666654 4433333332 3456899
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec-CCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcccc
Q 009993 321 SLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI-PHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLR 396 (520)
Q Consensus 321 ~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~ 396 (520)
.+.|++++..||....|. |.+|-..+-.- -..+.+. .....+..+.|+| ..|...+.+|.+..+++.-...
T Consensus 309 ~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHW----YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~ 383 (928)
T PF04762_consen 309 ELAWNSDSEILAVWLEDR-VQLWTRSNYHW----YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVS 383 (928)
T ss_pred EEEECCCCCEEEEEecCC-ceEEEeeCCEE----EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEE
Confidence 999999999999977666 99998876521 1122222 2233455589976 5777777777777666542221
Q ss_pred cCCCCC--CCceeee-------------eecCCCcccc-cCcceeeEEEEecCC--EEEEecCCCeEEEEeCCch
Q 009993 397 SGRPTS--GKRVSRV-------------IEVEPPQRML-HGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQA 453 (520)
Q Consensus 397 ~~~~~~--~~~~~~~-------------~~~~~~~~~~-~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~~ 453 (520)
...... ......+ ..+.||.... -....+|.++++..+ .+++-..||.|.+|.....
T Consensus 384 ~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 384 RSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred ecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 111110 1110000 0112222111 122345666666544 6999999999999986543
No 289
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.70 E-value=8e-06 Score=80.56 Aligned_cols=218 Identities=15% Similarity=0.073 Sum_probs=123.1
Q ss_pred hhccccccEEEEEEccCCCE---EEEEeCCC--eEEEEECCCCcEE--EEeCCCCceEEEEecCCCEEEEEeC-CC----
Q 009993 137 VLYGHTEAVLTVFVLASAKL---LFTSGYDS--IVRMWHLEDGFSI--ASSKPLGCTIRAVAADKKLLVAGGT-DG---- 204 (520)
Q Consensus 137 ~l~~h~~~V~~l~~~~~~~~---l~sgs~dg--~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~l~sg~~-dg---- 204 (520)
.|......+..=+|+|||+. +++...+| .|.+.++.+++.. ..+.+.. ..-.++|||+.|+..+. +|
T Consensus 179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~-~~p~wSPDG~~Laf~s~~~g~~di 257 (428)
T PRK01029 179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQ-LMPTFSPRKKLLAFISDRYGNPDL 257 (428)
T ss_pred EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCc-cceEECCCCCEEEEEECCCCCcce
Confidence 34445556677799999974 23444443 5777788877543 3333332 23478899998876553 23
Q ss_pred cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEe-cCCeEEEE--ECCC-CcEEEEee-ecc
Q 009993 205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS-WDMTVRVW--DRAL-LKCLKVLR-HSD 277 (520)
Q Consensus 205 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s-~dg~v~iw--d~~~-~~~~~~~~-~~~ 277 (520)
.+..|++.++.. ........++.+.....+| ||+.|+..+ .+|...+| ++.. +.....+. ...
T Consensus 258 ~~~~~~~~~g~~----------g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~ 327 (428)
T PRK01029 258 FIQSFSLETGAI----------GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYR 327 (428)
T ss_pred eEEEeecccCCC----------CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCC
Confidence 233456544210 0111111122233345667 777777655 46655555 4432 22233333 222
Q ss_pred CE--EEEeeCCCEEEEEc-C---CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC---CCeEEEEEcccC
Q 009993 278 WV--YGLAPHDTTVASTS-G---SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE---DGAIHMYEIIND 348 (520)
Q Consensus 278 ~v--~~~~~~~~~l~~~~-d---~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~---dg~i~iwd~~~~ 348 (520)
.+ ..++|+|+.|+... + ..|.+||+.+++...... ....+....|+|||+.|+..+. ...|+++|+.++
T Consensus 328 ~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~--~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 328 NSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT--SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred CccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC--CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 32 34569999888765 2 469999999887654332 2345678899999998775433 346888888776
Q ss_pred ccccceeeeeeecCCcCCEEEEEecC
Q 009993 349 CTEANVLLVATWIPHTGPVNSLAFEF 374 (520)
Q Consensus 349 ~~~~~~~~~~~~~~h~~~v~~l~~~~ 374 (520)
. . ..+....+.+...+|+|
T Consensus 406 ~------~-~~Lt~~~g~~~~p~Ws~ 424 (428)
T PRK01029 406 K------T-RKIVIGSGEKRFPSWGA 424 (428)
T ss_pred C------E-EEeecCCCcccCceecC
Confidence 2 2 12222334455566654
No 290
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.69 E-value=5.6e-06 Score=77.18 Aligned_cols=197 Identities=14% Similarity=0.096 Sum_probs=132.0
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCcc-ccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEEC
Q 009993 187 IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEK-QNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDR 264 (520)
Q Consensus 187 v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~ 264 (520)
...+..||+.++. +..|.|.++|..+......++.-+.. ......+.....-....+. +|++++..|. |...+.+.
T Consensus 271 ~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~ 348 (668)
T COG4946 271 PRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRP 348 (668)
T ss_pred ccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECC
Confidence 3445577887765 34588999998877654444431111 1111122222222233344 7889888887 66777776
Q ss_pred CCCcEEEEeeeccCEEEEe--eCCCEEEEEc-CC-eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeE
Q 009993 265 ALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GS-DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI 340 (520)
Q Consensus 265 ~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~-~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i 340 (520)
..+-.++ +.+...|.-.. .+++-++.|. || .+-|+|.++++..+.. +.-+.|.++..+|+|++++++.....|
T Consensus 349 ~~~~~iq-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e--~~lg~I~av~vs~dGK~~vvaNdr~el 425 (668)
T COG4946 349 WDGYSIQ-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE--KDLGNIEAVKVSPDGKKVVVANDRFEL 425 (668)
T ss_pred CCCeeEE-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee--CCccceEEEEEcCCCcEEEEEcCceEE
Confidence 5554433 33445555433 5566677777 76 8999999998765544 367889999999999999999999999
Q ss_pred EEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCC----cEEEEeCCcc
Q 009993 341 HMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDG----KLSLIDVRKL 394 (520)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg----~i~vwd~~~~ 394 (520)
-+.|+.++. ....-....+-|+.+.|+| +++|-+--+| .|+++|+.+.
T Consensus 426 ~vididngn------v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 426 WVIDIDNGN------VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred EEEEecCCC------eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 999999983 3222234567899999987 5888776665 6889999874
No 291
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.69 E-value=3.9e-07 Score=82.99 Aligned_cols=152 Identities=16% Similarity=0.166 Sum_probs=103.3
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEECCCCcE----EEEe--CCCCceEEEEecCCCEEEEEe---CCCcEEEEEcccCcc
Q 009993 146 LTVFVLASAKLLFTSGYDSIVRMWHLEDGFS----IASS--KPLGCTIRAVAADKKLLVAGG---TDGFIHCWRAVEVLP 216 (520)
Q Consensus 146 ~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~----~~~~--~~~~~~v~~~~~~~~~l~sg~---~dg~i~vwd~~~~~~ 216 (520)
..+..++++++||.+..+....++++..... +... ......+..+..+ .....+. ....+.+|....+
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s~~~~-- 142 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIRED-TSVLVADKAGDVYSFDILSADSG-- 142 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeecc-ceEEEEeecCCceeeeeeccccc--
Confidence 3445677888999888888877777754432 1111 1122223233333 3333332 2344444443322
Q ss_pred eeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee--eccCEEEEe-eCCCEEEE
Q 009993 217 HLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA-PHDTTVAS 291 (520)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~-~~~~~l~~ 291 (520)
....+.||-..++.+++ |+..++++..|..|++-.......+..+- |...|..++ .++..|++
T Consensus 143 ------------~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS 210 (390)
T KOG3914|consen 143 ------------RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLS 210 (390)
T ss_pred ------------CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeee
Confidence 34455689999999999 88999999999999998887666666553 999999999 66677788
Q ss_pred Ec-CCeEEEEECCCCeeeEEee
Q 009993 292 TS-GSDVYIWDTNSGCLLTVVN 312 (520)
Q Consensus 292 ~~-d~~i~iwd~~~~~~~~~~~ 312 (520)
++ |+++++||+++|+.+..+.
T Consensus 211 ~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 211 GSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred cCCCCcEEEEecccCCcccccc
Confidence 77 9999999999999886654
No 292
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.67 E-value=1.3e-05 Score=79.80 Aligned_cols=154 Identities=19% Similarity=0.175 Sum_probs=95.6
Q ss_pred EeccCCCCeEEEEE--cCCEEEEEecC---CeEEEEECCCCcEEEEeeeccCE--EEEeeCCCEEEEE-c-CC--eEEEE
Q 009993 232 RLWEHEGPITSLAL--DLTRIYSGSWD---MTVRVWDRALLKCLKVLRHSDWV--YGLAPHDTTVAST-S-GS--DVYIW 300 (520)
Q Consensus 232 ~~~~h~~~v~~l~~--~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~-~-d~--~i~iw 300 (520)
.+..+...+....| +++.|+..+.+ ..|.+||+.+++..........+ ..++|+|+.++.. . ++ .|+++
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~ 272 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVM 272 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEE
Confidence 34456778888888 77888766543 36899999988765443333222 3456899887743 3 44 68999
Q ss_pred ECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC-CC--eEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--C
Q 009993 301 DTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DG--AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P 375 (520)
Q Consensus 301 d~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~ 375 (520)
|+.+++... +. .+........|+|+|+.++..+. +| .|+++|+.++.. ..+ +..+ .......|+| +
T Consensus 273 d~~~~~~~~-lt-~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~----~~l-t~~~--~~~~~~~~Spdg~ 343 (430)
T PRK00178 273 DLASRQLSR-VT-NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA----ERV-TFVG--NYNARPRLSADGK 343 (430)
T ss_pred ECCCCCeEE-cc-cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEe-ecCC--CCccceEECCCCC
Confidence 999876543 32 24455667889999998776554 34 467777766531 111 1222 2223456654 5
Q ss_pred EEEEEeC-CC--cEEEEeCCcc
Q 009993 376 WLVSAAG-DG--KLSLIDVRKL 394 (520)
Q Consensus 376 ~l~s~s~-dg--~i~vwd~~~~ 394 (520)
.|+..+. ++ .|.+||+.++
T Consensus 344 ~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 344 TLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred EEEEEEccCCceEEEEEECCCC
Confidence 6666554 33 4788888764
No 293
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=7.1e-07 Score=88.36 Aligned_cols=189 Identities=19% Similarity=0.112 Sum_probs=131.6
Q ss_pred CCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeeccc
Q 009993 237 EGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAH 315 (520)
Q Consensus 237 ~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~ 315 (520)
...+.|.++.+..++-|+.+|.|++++....- ...+.|... ..+|.++++|+ ||+|.|..+-+.+....+. .
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d--f 111 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDEITQYD--F 111 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCcc-ccccccccc----ccCCceEEEecCCCcEEEeeccCCccceeEe--c
Confidence 45677788899999999999999999975432 222333333 56899999999 9999999998888777664 6
Q ss_pred ccceEEEEecCC-----CCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEe
Q 009993 316 VGNTKSLARSHT-----GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLID 390 (520)
Q Consensus 316 ~~~i~~l~~s~~-----~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd 390 (520)
..++.+++++|+ .+.+++|+.-| +.++.-+--+.. ..+ .+....++|.++.|.++++|-++.+| |+|||
T Consensus 112 ~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk---~~v-~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd 185 (846)
T KOG2066|consen 112 KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK---DSV-VLSEGEGPIHSIKWRGNLIAWANDDG-VKVYD 185 (846)
T ss_pred CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc---cce-eeecCccceEEEEecCcEEEEecCCC-cEEEe
Confidence 778999999997 46799999999 777764332111 112 45566889999999999999999887 99999
Q ss_pred CCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC-EEEEecCCCeEEEEeCCc
Q 009993 391 VRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQ 452 (520)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~ 452 (520)
..+............ .... ...-..+.|.++ .|+. |+..+|+|..++.
T Consensus 186 ~~~~~~l~~i~~p~~------------~~R~-e~fpphl~W~~~~~LVI-GW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 186 TPTRQRLTNIPPPSQ------------SVRP-ELFPPHLHWQDEDRLVI-GWGDSVKICSIKK 234 (846)
T ss_pred ccccceeeccCCCCC------------CCCc-ccCCCceEecCCCeEEE-ecCCeEEEEEEec
Confidence 988654433222211 1000 001112334444 4544 4445799998883
No 294
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=1.5e-07 Score=83.80 Aligned_cols=140 Identities=11% Similarity=0.112 Sum_probs=105.9
Q ss_pred CCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCC---
Q 009993 193 DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALL--- 267 (520)
Q Consensus 193 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~--- 267 (520)
.+.. ++.+.+-.|-+-|++++.. ..+ ...+.|.++.| .++.++.|..+|.|..+|++.+
T Consensus 224 ~gyh-fs~G~sqqv~L~nvetg~~--------------qsf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG 287 (425)
T KOG2695|consen 224 MGYH-FSVGLSQQVLLTNVETGHQ--------------QSF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQG 287 (425)
T ss_pred ceee-ecccccceeEEEEeecccc--------------ccc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccC
Confidence 3444 5555666777888887732 122 35677888888 5689999999999999999854
Q ss_pred --cEEEEeeeccCEEEEe---eCCCEEEEEc-CCeEEEEECCCCee---eEEeecccccceEE--EEecCCCCEEEEEeC
Q 009993 268 --KCLKVLRHSDWVYGLA---PHDTTVASTS-GSDVYIWDTNSGCL---LTVVNGAHVGNTKS--LARSHTGDFLFTGGE 336 (520)
Q Consensus 268 --~~~~~~~~~~~v~~~~---~~~~~l~~~~-d~~i~iwd~~~~~~---~~~~~~~~~~~i~~--l~~s~~~~~l~tg~~ 336 (520)
.+...+-|+..|+++. .++..|++.+ +|+|++||.+.-++ +..+. +|...-.- +...+....+++++.
T Consensus 288 ~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe-GHvN~~a~l~~~v~~eeg~I~s~Gd 366 (425)
T KOG2695|consen 288 NGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE-GHVNLSAYLPAHVKEEEGSIFSVGD 366 (425)
T ss_pred CCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee-cccccccccccccccccceEEEccC
Confidence 5677778999999988 5777777777 99999999987766 76666 57543322 234556778899999
Q ss_pred CCeEEEEEcccCc
Q 009993 337 DGAIHMYEIINDC 349 (520)
Q Consensus 337 dg~i~iwd~~~~~ 349 (520)
|...+||.++.+.
T Consensus 367 DcytRiWsl~~gh 379 (425)
T KOG2695|consen 367 DCYTRIWSLDSGH 379 (425)
T ss_pred eeEEEEEecccCc
Confidence 9999999999883
No 295
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.63 E-value=0.00017 Score=67.60 Aligned_cols=165 Identities=16% Similarity=0.163 Sum_probs=119.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCC-cEEEEEcccCcceeeeccCCccccceE
Q 009993 153 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDG-FIHCWRAVEVLPHLFDISGSEKQNTQF 231 (520)
Q Consensus 153 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~ 231 (520)
+|.+++..|. |...|.+...+-.+..-+.....-..+..+++.++.|..|| .+-++|..++ ...
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~--------------e~k 395 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG--------------EVK 395 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc--------------eEE
Confidence 5788888875 56777776666555443333333445556777899999999 8999998876 344
Q ss_pred EeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CC----eEEEEE
Q 009993 232 RLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GS----DVYIWD 301 (520)
Q Consensus 232 ~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~----~i~iwd 301 (520)
.+...-+.|.++.. +|++++.+.....+.+.|++++.....-+ ..+-|+.+. +++++++-+- +| .|+++|
T Consensus 396 r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklyd 475 (668)
T COG4946 396 RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYD 475 (668)
T ss_pred EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEe
Confidence 55566788999988 77889998888899999999987654433 556677766 8888998877 54 599999
Q ss_pred CCCCeeeEEeecccccceEEEEecCCCCEEEEE
Q 009993 302 TNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTG 334 (520)
Q Consensus 302 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg 334 (520)
+..++...... ..+.=.+-+|.|++++|.--
T Consensus 476 m~~~Kiy~vTT--~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 476 MDGGKIYDVTT--PTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred cCCCeEEEecC--CcccccCcccCCCCcEEEEE
Confidence 99987765543 23333466788999877643
No 296
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.63 E-value=3.3e-07 Score=89.53 Aligned_cols=235 Identities=14% Similarity=0.092 Sum_probs=147.7
Q ss_pred EEEEEccCC---CEEEEEeCCCeEEEEECCCC---cEEEEeCCCCceEEEEe---cCCCEEEEEeCCCcEEEEEcccCcc
Q 009993 146 LTVFVLASA---KLLFTSGYDSIVRMWHLEDG---FSIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWRAVEVLP 216 (520)
Q Consensus 146 ~~l~~~~~~---~~l~sgs~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~~~ 216 (520)
-.+.|+|.. ..+++.+ ...-.+|++... .....+.+|+..++.+. .....+++++.|..+..||+++...
T Consensus 71 ad~qws~h~a~~~wiVsts-~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~ 149 (1081)
T KOG0309|consen 71 ADVQWSPHPAKPYWIVSTS-NQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR 149 (1081)
T ss_pred cceecccCCCCceeEEecC-cchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence 344565532 2344443 445668887532 22334578998898887 3456899999999999999987643
Q ss_pred eeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCc-EEEEee-eccCEEEEee----CCC
Q 009993 217 HLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLK-CLKVLR-HSDWVYGLAP----HDT 287 (520)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~-~~~~v~~~~~----~~~ 287 (520)
.......-...-..++| +++.++ .+....|++||.+.+. .+..++ |...|+.+.. .+.
T Consensus 150 ------------p~ys~~~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~ 216 (1081)
T KOG0309|consen 150 ------------PFYSTSSWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSE 216 (1081)
T ss_pred ------------ceeeeecccccCceeeecccCcchhh-hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhh
Confidence 33333333445556777 455554 4555789999998764 445554 6666666662 334
Q ss_pred EEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEE--EeCCCeEEEEEcccCccc----cceeeeeeec
Q 009993 288 TVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFT--GGEDGAIHMYEIINDCTE----ANVLLVATWI 361 (520)
Q Consensus 288 ~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~t--g~~dg~i~iwd~~~~~~~----~~~~~~~~~~ 361 (520)
.+-+..|++|+.||................+|..-.+.|=|+-.++ .-.+..+.+++-++.... ....++.++.
T Consensus 217 ~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~ 296 (1081)
T KOG0309|consen 217 IMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFV 296 (1081)
T ss_pred hcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeec
Confidence 4444449999999987654332222234567777777775543222 111224555544433221 1236799999
Q ss_pred CCcCCEEEEEec------C------CEEEEEeCCCcEEEEeCCcc
Q 009993 362 PHTGPVNSLAFE------F------PWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 362 ~h~~~v~~l~~~------~------~~l~s~s~dg~i~vwd~~~~ 394 (520)
||.+.|....|- + -.|++=+.|..+++|-+.+.
T Consensus 297 GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 297 GHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred CcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 999998777771 1 27999999999999998753
No 297
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.60 E-value=2.5e-06 Score=75.10 Aligned_cols=245 Identities=14% Similarity=0.209 Sum_probs=145.6
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc-----EEEEeCCCCc------------eEEE---EecC-CCEEEE
Q 009993 141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF-----SIASSKPLGC------------TIRA---VAAD-KKLLVA 199 (520)
Q Consensus 141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~-----~~~~~~~~~~------------~v~~---~~~~-~~~l~s 199 (520)
..+.|+++.|...|.+|++|...|.|.+|.-+... ....+++|.. .|.+ +.+. ...++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35679999999999999999999999999865432 2233555542 1222 2232 335667
Q ss_pred EeCCCcEEEEEcccCcceeee-----------ccC-------------Cccc-----cce-EEeccCCCCeEEEEEcC--
Q 009993 200 GGTDGFIHCWRAVEVLPHLFD-----------ISG-------------SEKQ-----NTQ-FRLWEHEGPITSLALDL-- 247 (520)
Q Consensus 200 g~~dg~i~vwd~~~~~~~~~~-----------~~~-------------~~~~-----~~~-~~~~~h~~~v~~l~~~~-- 247 (520)
.+.|.+|++|.+......+.. ..+ +... .+. .....|.-.|.++.++.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 788999999988654221100 000 0000 001 11145777888999933
Q ss_pred CEEEEEecCCeEEEEECCCCcEEEEe---e-e-----ccCEEEEe--e--CCCEEEEEcCCeEEEEECCCCee------e
Q 009993 248 TRIYSGSWDMTVRVWDRALLKCLKVL---R-H-----SDWVYGLA--P--HDTTVASTSGSDVYIWDTNSGCL------L 308 (520)
Q Consensus 248 ~~l~s~s~dg~v~iwd~~~~~~~~~~---~-~-----~~~v~~~~--~--~~~~l~~~~d~~i~iwd~~~~~~------~ 308 (520)
..+++ +.|=.|.+|+++-......+ . | ...|++.. | ...++++.+.|.|++-|++.... +
T Consensus 185 et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 44554 45678999998643221111 1 1 12233333 2 23345556689999999984321 1
Q ss_pred EE---------eecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCc------------CCE
Q 009993 309 TV---------VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT------------GPV 367 (520)
Q Consensus 309 ~~---------~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~------------~~v 367 (520)
.. +..+-...|..+.|+++|+++++-+ --++++||++... .++.+..-|. ..|
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k-----~pikTi~~h~~l~~~l~d~YEnDai 337 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAK-----NPIKTIPMHCDLMDELNDVYENDAI 337 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEeccccc-----CCceeechHHHHHHHHHhhhhccce
Confidence 00 1112345688899999999988754 3579999998875 3455543332 122
Q ss_pred ---EEEEecC--CEEEEEeCCCcEEEEeCC
Q 009993 368 ---NSLAFEF--PWLVSAAGDGKLSLIDVR 392 (520)
Q Consensus 368 ---~~l~~~~--~~l~s~s~dg~i~vwd~~ 392 (520)
..+.|++ ..+++|+.....-++-..
T Consensus 338 fdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 338 FDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eeeEEEEecCCcccccccccccceeeeccc
Confidence 2345544 578888888777777644
No 298
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.59 E-value=2.5e-05 Score=77.70 Aligned_cols=153 Identities=16% Similarity=0.137 Sum_probs=90.8
Q ss_pred eccCCCCeEEEEE--cCCEEEEEecC-C--eEEEEECCCCcEEEEeeeccC--EEEEeeCCCEEEEEc--CC--eEEEEE
Q 009993 233 LWEHEGPITSLAL--DLTRIYSGSWD-M--TVRVWDRALLKCLKVLRHSDW--VYGLAPHDTTVASTS--GS--DVYIWD 301 (520)
Q Consensus 233 ~~~h~~~v~~l~~--~~~~l~s~s~d-g--~v~iwd~~~~~~~~~~~~~~~--v~~~~~~~~~l~~~~--d~--~i~iwd 301 (520)
+..+...+.+..| |++.|+..+.+ + .|.+||+.+++.......... -..++|+++.++... ++ .|+++|
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence 3445667788888 77777766543 2 588999988765433222222 234569999877543 45 488889
Q ss_pred CCCCeeeEEeecccccceEEEEecCCCCEEEEEeC-CCe--EEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CE
Q 009993 302 TNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DGA--IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PW 376 (520)
Q Consensus 302 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~ 376 (520)
+.+++... +. .+.......+|+|||+.|+..+. ++. |+++|+.++.. ..+ ++.++ ......|+| ++
T Consensus 293 l~tg~~~~-lt-~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~----~~L-t~~g~--~~~~~~~SpDG~~ 363 (448)
T PRK04792 293 IATKALTR-IT-RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV----SRL-TFEGE--QNLGGSITPDGRS 363 (448)
T ss_pred CCCCCeEE-Cc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEE-ecCCC--CCcCeeECCCCCE
Confidence 98876543 32 24455677899999998876554 444 66667665521 111 12222 223456755 56
Q ss_pred EEEEeC-CCc--EEEEeCCcc
Q 009993 377 LVSAAG-DGK--LSLIDVRKL 394 (520)
Q Consensus 377 l~s~s~-dg~--i~vwd~~~~ 394 (520)
|+..+. ++. |.++|+.++
T Consensus 364 l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 364 MIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred EEEEEecCCceEEEEEECCCC
Confidence 655544 444 455666553
No 299
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.59 E-value=5e-08 Score=61.00 Aligned_cols=40 Identities=35% Similarity=0.514 Sum_probs=38.3
Q ss_pred CCHHHHHHHccCCChhhhHHHhhhhhhHHHhhcCcchhhh
Q 009993 67 LPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKE 106 (520)
Q Consensus 67 LP~el~~~i~~~L~~~~l~~~s~v~~~~~~~~~~~~lW~~ 106 (520)
||+|++.+||.||++.++.++++|||.|+.++.++.+|+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999999999874
No 300
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.59 E-value=1.9e-07 Score=83.18 Aligned_cols=140 Identities=14% Similarity=0.107 Sum_probs=105.9
Q ss_pred EEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCC-----eeeEEeecccccceEEE
Q 009993 251 YSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSG-----CLLTVVNGAHVGNTKSL 322 (520)
Q Consensus 251 ~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~-----~~~~~~~~~~~~~i~~l 322 (520)
++.+.+..|-+-|++++.... +...+.|.++. ..+++++.|. +|.|..+|++.+ .+...+. |.+.|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~qs-f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly--h~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS-FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY--HDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeecccccc-cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE--cCcchhhh
Confidence 666677788899998875433 33555666665 4578888888 999999999865 4455553 99999999
Q ss_pred EecC-CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe--c--CCEEEEEeCCCcEEEEeCCcccc
Q 009993 323 ARSH-TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--E--FPWLVSAAGDGKLSLIDVRKLLR 396 (520)
Q Consensus 323 ~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~--~~~l~s~s~dg~i~vwd~~~~~~ 396 (520)
..-. ++.+|++.+.+|+|++||.+.-+.. +-+.++.+|...-.-+-+ + ...+++++.|...+||.++.+..
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~---~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCK---KSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL 380 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcc---cceeeeecccccccccccccccccceEEEccCeeEEEEEecccCce
Confidence 8766 7889999999999999999887211 238888888765444444 2 36899999999999999997543
No 301
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.57 E-value=1.3e-06 Score=85.18 Aligned_cols=202 Identities=10% Similarity=0.150 Sum_probs=129.0
Q ss_pred EEecCCCEEEEEeCCCcEEEEEcccCcceeeec--cCCccccceEEeccCCCCeEEEEEc--CCEEEEEecCCeEEEEEC
Q 009993 189 AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDI--SGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSWDMTVRVWDR 264 (520)
Q Consensus 189 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~v~iwd~ 264 (520)
.+..+..+++.|+.||.++|..+.+.....-.. ........-..+.||++.|.-+.|+ ...|-+...+|.|.+|-+
T Consensus 21 ~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWml 100 (1189)
T KOG2041|consen 21 EWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWML 100 (1189)
T ss_pred EEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEee
Confidence 344678899999999999999887754322211 1223344556788999999999994 356888889999999988
Q ss_pred CCCcEEEEe---eeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeE-EeecccccceEEEEecCCCCEEEEEeCC
Q 009993 265 ALLKCLKVL---RHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLT-VVNGAHVGNTKSLARSHTGDFLFTGGED 337 (520)
Q Consensus 265 ~~~~~~~~~---~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~-~~~~~~~~~i~~l~~s~~~~~l~tg~~d 337 (520)
-.+.-.... +..+.|.+++ .+|..+.... ||.|.+=.++..+... .+ .......+.|++|.+.+..+-.+
T Consensus 101 ykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL---kg~~l~hv~ws~D~~~~Lf~~an 177 (1189)
T KOG2041|consen 101 YKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL---KGQLLAHVLWSEDLEQALFKKAN 177 (1189)
T ss_pred ecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc---chheccceeecccHHHHHhhhcC
Confidence 766433222 1445566666 5677776666 7776665554432211 11 12234467899999988888899
Q ss_pred CeEEEEEcccCcccc-ceee----eeeecCCcCCEEEEEec----------CCEEEEEeCCCcEEEEeCCc
Q 009993 338 GAIHMYEIINDCTEA-NVLL----VATWIPHTGPVNSLAFE----------FPWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 338 g~i~iwd~~~~~~~~-~~~~----~~~~~~h~~~v~~l~~~----------~~~l~s~s~dg~i~vwd~~~ 393 (520)
|.+++||....-... ...+ ...+......|..+.|. ...|+.+-.+|.+.|-.-.+
T Consensus 178 ge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN 248 (1189)
T KOG2041|consen 178 GETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN 248 (1189)
T ss_pred CcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC
Confidence 999999976542100 0011 11111122235566662 15899999999988865544
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.55 E-value=0.00064 Score=61.99 Aligned_cols=206 Identities=14% Similarity=0.032 Sum_probs=125.8
Q ss_pred EEEEcc-CCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCc
Q 009993 147 TVFVLA-SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSE 225 (520)
Q Consensus 147 ~l~~~~-~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~ 225 (520)
+..|.+ ++.++++--..+.|..|+..++......... ..-..+...+..++.+..++ +.++|..++...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~-------- 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVT-------- 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS-EEEEEEECTTSEEEEEETTC-EEEEETTTTEEE--------
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-CceEEEEccCCEEEEEEcCc-eEEEecCCCcEE--------
Confidence 567887 6777777778899999999887654322222 22233442345566666554 455588776321
Q ss_pred cccceEEec--c-CCCCeEEEEE--cCCEEEEEecC--------CeEEEEECCCCcEEEEeeeccCEEEE--eeCCCEEE
Q 009993 226 KQNTQFRLW--E-HEGPITSLAL--DLTRIYSGSWD--------MTVRVWDRALLKCLKVLRHSDWVYGL--APHDTTVA 290 (520)
Q Consensus 226 ~~~~~~~~~--~-h~~~v~~l~~--~~~~l~s~s~d--------g~v~iwd~~~~~~~~~~~~~~~v~~~--~~~~~~l~ 290 (520)
...... . .....+.+++ +|+..++.... |.|..++.. ++.......-...+.+ +++++.|+
T Consensus 74 ---~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 74 ---VLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp ---EEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred ---EEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchhee
Confidence 222221 1 3456778888 55655554433 567777877 5554444444444454 48888776
Q ss_pred EEc--CCeEEEEECCCCee----eEEeec--ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecC
Q 009993 291 STS--GSDVYIWDTNSGCL----LTVVNG--AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP 362 (520)
Q Consensus 291 ~~~--d~~i~iwd~~~~~~----~~~~~~--~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 362 (520)
.+. .+.|..+++..... ...+.. ...+..-.+++..+|++.++....+.|.++|.+ + +.+..+.-
T Consensus 150 v~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G------~~~~~i~~ 222 (246)
T PF08450_consen 150 VADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G------KLLREIEL 222 (246)
T ss_dssp EEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S------CEEEEEE-
T ss_pred ecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c------cEEEEEcC
Confidence 554 68899999863221 122211 112347789999999988888889999999987 5 34444444
Q ss_pred CcCCEEEEEec
Q 009993 363 HTGPVNSLAFE 373 (520)
Q Consensus 363 h~~~v~~l~~~ 373 (520)
....+++++|.
T Consensus 223 p~~~~t~~~fg 233 (246)
T PF08450_consen 223 PVPRPTNCAFG 233 (246)
T ss_dssp SSSSEEEEEEE
T ss_pred CCCCEEEEEEE
Confidence 44588999993
No 303
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.54 E-value=3.4e-07 Score=56.42 Aligned_cols=38 Identities=29% Similarity=0.551 Sum_probs=34.9
Q ss_pred eeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEE
Q 009993 306 CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE 344 (520)
Q Consensus 306 ~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd 344 (520)
+++..+. +|.+.|++++|+|++.+|++|+.|+.|++||
T Consensus 2 ~~~~~~~-~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFR-GHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEE-SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEc-CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 5667776 7999999999999999999999999999997
No 304
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=4.9e-06 Score=82.63 Aligned_cols=182 Identities=14% Similarity=0.118 Sum_probs=129.1
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeec
Q 009993 142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDI 221 (520)
Q Consensus 142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 221 (520)
.+.++|++++ +++++-|+.+|.|++.+.... . .+...|... ..+|.++++|+.||+|.|-.+-+...
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~----- 105 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDE----- 105 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc----ccCCceEEEecCCCcEEEeeccCCcc-----
Confidence 4566777775 789999999999999997533 2 333344333 57899999999999999988766531
Q ss_pred cCCccccceEEeccCCCCeEEEEEcC-------CEEEEEecCCeEEEEECC---CCcEEEEeeeccCEEEEeeCCCEEEE
Q 009993 222 SGSEKQNTQFRLWEHEGPITSLALDL-------TRIYSGSWDMTVRVWDRA---LLKCLKVLRHSDWVYGLAPHDTTVAS 291 (520)
Q Consensus 222 ~~~~~~~~~~~~~~h~~~v~~l~~~~-------~~l~s~s~dg~v~iwd~~---~~~~~~~~~~~~~v~~~~~~~~~l~~ 291 (520)
........++.++++++ +.+++|+.-| +.++.-. ....+..-...++|.++...|++++=
T Consensus 106 ---------~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAW 175 (846)
T KOG2066|consen 106 ---------ITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAW 175 (846)
T ss_pred ---------ceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEE
Confidence 11223457888888855 4689999888 7776532 11222112278899999999999999
Q ss_pred EcCCeEEEEECCCCeeeEEeeccccc-----ceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993 292 TSGSDVYIWDTNSGCLLTVVNGAHVG-----NTKSLARSHTGDFLFTGGEDGAIHMYEIIND 348 (520)
Q Consensus 292 ~~d~~i~iwd~~~~~~~~~~~~~~~~-----~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~ 348 (520)
++|-.|++||+.+++.+..++..+.. -...+.|.++ ..|+.|- ..+|+|..++..
T Consensus 176 and~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW-~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 176 ANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGW-GDSVKICSIKKR 235 (846)
T ss_pred ecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEec-CCeEEEEEEecc
Confidence 99999999999999988887754422 1235666654 4566664 446889888833
No 305
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.51 E-value=4.4e-08 Score=63.60 Aligned_cols=44 Identities=39% Similarity=0.643 Sum_probs=38.4
Q ss_pred ccCCCHHHHHHHccCCChhhhHHHhhhhhhHHHhhcCcchhhhh
Q 009993 64 ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEF 107 (520)
Q Consensus 64 ~~~LP~el~~~i~~~L~~~~l~~~s~v~~~~~~~~~~~~lW~~~ 107 (520)
+..||.|++.+||.||++.++.++++||+.|+.++.+..+|...
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 67899999999999999999999999999999999999998763
No 306
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.51 E-value=1.2e-06 Score=77.10 Aligned_cols=278 Identities=15% Similarity=0.161 Sum_probs=153.3
Q ss_pred eEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccC------------CCCeEEEEE--cC--
Q 009993 186 TIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH------------EGPITSLAL--DL-- 247 (520)
Q Consensus 186 ~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h------------~~~v~~l~~--~~-- 247 (520)
.|+++. ..|.++++|...|.|.++.-.....+-+ +....+++| ...|..+.| ++
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~cey--------kf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r 99 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEY--------KFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR 99 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeecccccccch--------hhhhhhcccccchhhhhhccHHHHhhheeeecCCCc
Confidence 344544 6678999999999999997544321110 011112233 345777788 22
Q ss_pred CEEEEEecCCeEEEEECCCCcEEEEee----------eccCEEEEe----e---CCCEEEEEcCCeEEEEECCCCeeeEE
Q 009993 248 TRIYSGSWDMTVRVWDRALLKCLKVLR----------HSDWVYGLA----P---HDTTVASTSGSDVYIWDTNSGCLLTV 310 (520)
Q Consensus 248 ~~l~s~s~dg~v~iwd~~~~~~~~~~~----------~~~~v~~~~----~---~~~~l~~~~d~~i~iwd~~~~~~~~~ 310 (520)
+.++..+.|++|++|.+........-. ..+++++.. | ....++++. +.+.
T Consensus 100 ~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~-------------p~rv 166 (460)
T COG5170 100 NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK-------------PCRV 166 (460)
T ss_pred ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEec-------------ccee
Confidence 457777889999999986542211111 122333221 0 011111111 1222
Q ss_pred eecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCC-----cCCEEEEEecC---CEEEEEeC
Q 009993 311 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH-----TGPVNSLAFEF---PWLVSAAG 382 (520)
Q Consensus 311 ~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~~---~~l~s~s~ 382 (520)
....|...++++.|..|...++++ .|=.|.+|++.-.... ..+..+.+| +..|++..|+| ..+.-.+.
T Consensus 167 yaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~s---FnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS 242 (460)
T COG5170 167 YANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGS---FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS 242 (460)
T ss_pred ccccceeEeeeeeecCchheeeec-cceeeeeccccccCCc---eEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC
Confidence 335788899999999988888766 6778999998655321 223334444 34688889987 57888888
Q ss_pred CCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEec--CCEEEEecCCCeEEEEeCCchHhHHHHh
Q 009993 383 DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVCGGEEGIVRIWNFSQAFEIERRA 460 (520)
Q Consensus 383 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~~~~~~~~~~ 460 (520)
.|.|++-|++.......... ......-......+.+-..++..+.|. ++++++-+. -+|+|||+......-...
T Consensus 243 kG~Ikl~DlRq~alcdn~~k---lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi 318 (460)
T COG5170 243 KGEIKLNDLRQSALCDNSKK---LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTI 318 (460)
T ss_pred CCcEEehhhhhhhhccCchh---hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceee
Confidence 99999999985321110000 000000001111223333445555554 457777665 589999998765432221
Q ss_pred hhhccc------ccchhhhhccceeeeccCCCcccccc
Q 009993 461 RALRGI------RLENRMRRRKLQTEMSSKGGRTDQCS 492 (520)
Q Consensus 461 ~~~~~~------~~~~~~~~~~~~~~~s~~g~~~~~~s 492 (520)
+..... ..+...--.+..+.||-|.+...+.|
T Consensus 319 ~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgs 356 (460)
T COG5170 319 PMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGS 356 (460)
T ss_pred chHHHHHHHHHhhhhccceeeeEEEEecCCcccccccc
Confidence 111100 01112222356788888888777754
No 307
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.50 E-value=7.6e-05 Score=73.20 Aligned_cols=188 Identities=12% Similarity=0.013 Sum_probs=113.9
Q ss_pred cEEEEEEccCCCE-EEEEeC---CCeEEEEECCCCcEEEEeCCC-CceEEEEecCCCEEEE-EeCC--CcEEEEEcccCc
Q 009993 144 AVLTVFVLASAKL-LFTSGY---DSIVRMWHLEDGFSIASSKPL-GCTIRAVAADKKLLVA-GGTD--GFIHCWRAVEVL 215 (520)
Q Consensus 144 ~V~~l~~~~~~~~-l~sgs~---dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~l~s-g~~d--g~i~vwd~~~~~ 215 (520)
.+..-.|+|||+. ++..+. +..|.++|+.+++........ ......++|||+.++. .+.+ ..|.++|+.++.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 6778999999984 654443 356999999888765443322 2234568899987664 3334 456667765542
Q ss_pred ceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec-CC--eEEEEECCCCcEEEEeeeccCEEEEeeCCCEEE
Q 009993 216 PHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DM--TVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVA 290 (520)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg--~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~ 290 (520)
...+..+........| ||+.|+..+. .+ .|.+.|+.+++..+..........++|+|+.++
T Consensus 269 --------------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia 334 (419)
T PRK04043 269 --------------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIV 334 (419)
T ss_pred --------------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEE
Confidence 1122222222223346 7777666553 23 688888888776444332222346779999887
Q ss_pred EEc-C---------CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCC-C--eEEEEEcccC
Q 009993 291 STS-G---------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED-G--AIHMYEIIND 348 (520)
Q Consensus 291 ~~~-d---------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d-g--~i~iwd~~~~ 348 (520)
... . ..|.+.|+.++... .+... .......|+|||+.++....+ + .+.+.++...
T Consensus 335 ~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~--~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 335 YSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN--GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC--CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 765 3 26888899888653 33321 233357899999987765443 2 3556666544
No 308
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.50 E-value=0.00022 Score=61.75 Aligned_cols=273 Identities=14% Similarity=0.126 Sum_probs=136.6
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeCCC-CceEEE-EecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccce
Q 009993 153 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPL-GCTIRA-VAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQ 230 (520)
Q Consensus 153 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~-~~~v~~-~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 230 (520)
-|++++.|.+.|.+++-+..+|.....+..- ...+.+ +.+++..+..|+.|+..+..|..+.. .+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~-------------cV 128 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG-------------CV 128 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccc-------------eE
Confidence 3778999999999999999999877766532 233333 34899999999999999999987643 22
Q ss_pred EEeccCCCCeE--EEEEcCCEEEEEecCCeEEEEECCCCc--EEEEeeeccCEEEE-eeCCCEEEEEc-CCeEEEEECCC
Q 009993 231 FRLWEHEGPIT--SLALDLTRIYSGSWDMTVRVWDRALLK--CLKVLRHSDWVYGL-APHDTTVASTS-GSDVYIWDTNS 304 (520)
Q Consensus 231 ~~~~~h~~~v~--~l~~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~~v~~~-~~~~~~l~~~~-d~~i~iwd~~~ 304 (520)
.+.+-..+.-. +++.-...|+.+...|.|.--...+.. .+.......++.+- ..-+..+..+. ||.+.-+| ..
T Consensus 129 ykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~-~s 207 (354)
T KOG4649|consen 129 YKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFD-ES 207 (354)
T ss_pred EecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEc-CC
Confidence 22211111111 122222345555555655544444331 11111223333322 12223333333 77777777 55
Q ss_pred CeeeEEeecccccceEE-EEec-CCCCEEEEEeCCCeE--------EEEEcccCcccc-ceeeeeeecCCcCCEEEEEec
Q 009993 305 GCLLTVVNGAHVGNTKS-LARS-HTGDFLFTGGEDGAI--------HMYEIINDCTEA-NVLLVATWIPHTGPVNSLAFE 373 (520)
Q Consensus 305 ~~~~~~~~~~~~~~i~~-l~~s-~~~~~l~tg~~dg~i--------~iwd~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~ 373 (520)
|+.+..+. ..++|.. -+-+ |..+.+..+.++.-+ .+|..+.+.... ...+...+.-|.-.+. .
T Consensus 208 G~qvwr~~--t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~l~F~~h~~~~S----~ 281 (354)
T KOG4649|consen 208 GRQVWRPA--TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPKLRFDLHSPGIS----Y 281 (354)
T ss_pred CcEEEeec--CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcccceeccCCCCc----c
Confidence 66665543 3333321 1111 333344444333222 244444431000 0000000111111100 1
Q ss_pred CCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCch
Q 009993 374 FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQA 453 (520)
Q Consensus 374 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~ 453 (520)
+.+|..++.||.+.|.-.+..... ....+...+.+..++-...++ +.++. . +.+|+.|+.|..|+-||+.+.
T Consensus 282 ~~ll~~~s~dgkv~il~~~~sl~~-~~s~~g~lq~~~~~el~~eIF---sSPvi---i-~grl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 282 PKLLRRSSGDGKVMILMTSKSLAE-ISSNGGELQNLEAIELSNEIF---SSPVI---I-DGRLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred hhhhhhhcCCCcEEEEEecccccc-cccCCCccceEEEeecCcccc---cCCeE---E-ccEEEEEEccCeEEEEecccc
Confidence 457788899999998866543111 111222233333222222111 11211 1 246888999999999999864
No 309
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.3e-06 Score=80.71 Aligned_cols=264 Identities=14% Similarity=0.130 Sum_probs=167.6
Q ss_pred CCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec-CCe
Q 009993 183 LGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DMT 258 (520)
Q Consensus 183 ~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg~ 258 (520)
|...|+.+. ...+++.+++.||.++.|.-..- .....+..+..|.+.|.+++. ++..+.|.+. |..
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~i----------sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs 77 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRI----------SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHS 77 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCc----------cceeehhhhHHHHHHHHhhhccccceeEeeccCcccc
Confidence 556666554 56779999999999999974321 111233445567777877776 7788888777 999
Q ss_pred EEEEECCCCcEEEEee---eccCEEEEeeCC---CEEEEEc--CCeEEEEECCCCe-eeEEeecccccceEEEEecCCCC
Q 009993 259 VRVWDRALLKCLKVLR---HSDWVYGLAPHD---TTVASTS--GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTGD 329 (520)
Q Consensus 259 v~iwd~~~~~~~~~~~---~~~~v~~~~~~~---~~l~~~~--d~~i~iwd~~~~~-~~~~~~~~~~~~i~~l~~s~~~~ 329 (520)
++++|+++...+.-+. .+..+..+...| ..++++. ++.+.++|-.... +...+..-|..+|..+.+.+.++
T Consensus 78 ~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D 157 (558)
T KOG0882|consen 78 VKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD 157 (558)
T ss_pred eeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc
Confidence 9999998776654443 455555555333 2444444 6899999987654 44444456999999999999999
Q ss_pred EEEEEeCCCeEEEEEcccC-ccc-----cce---eeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccC
Q 009993 330 FLFTGGEDGAIHMYEIIND-CTE-----ANV---LLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSG 398 (520)
Q Consensus 330 ~l~tg~~dg~i~iwd~~~~-~~~-----~~~---~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~ 398 (520)
.+++....|.|.-|..... +.+ ... ..+..+.......+++.|+| ..+.+-+.|..|+++++.++....
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence 9999999999999998741 000 000 11112222345678888876 688888899999999999875443
Q ss_pred CCCCCCce--------eeeeecCCCc-----ccccCcc---eeeEEEEecCCEEEEecCCCeEEEEeCCchHhHH
Q 009993 399 RPTSGKRV--------SRVIEVEPPQ-----RMLHGFE---CNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIE 457 (520)
Q Consensus 399 ~~~~~~~~--------~~~~~~~~~~-----~~~~~~~---~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~ 457 (520)
........ ..+..+.-.. +.+..|. ..-..++-++++|+-|+-=| |++.++.++..++
T Consensus 238 eiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~r 311 (558)
T KOG0882|consen 238 EIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVR 311 (558)
T ss_pred hhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEE
Confidence 22211100 0000000000 1111122 22334555566888887766 7888888765543
No 310
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.5e-05 Score=72.99 Aligned_cols=237 Identities=11% Similarity=0.154 Sum_probs=140.2
Q ss_pred hhhhccccccEEEEEEccCCC-EEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe---cCCCEEEEEeCCCcEEEEE
Q 009993 135 IDVLYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWR 210 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~-~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd 210 (520)
.+.+.+|...|..++|+|..+ ++..++.+..|+|.|+++...+..+..+ ..+.+++ .+.++|+.|...|.|.+||
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence 447889999999999999776 7889999999999999999888888777 4455544 4577899999999999999
Q ss_pred cccCcceeeeccCCccccceEEeccCCCCeEEEEE--------cCCEEEEEecCCeEEEEECC----CCcEEEEeeeccC
Q 009993 211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--------DLTRIYSGSWDMTVRVWDRA----LLKCLKVLRHSDW 278 (520)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--------~~~~l~s~s~dg~v~iwd~~----~~~~~~~~~~~~~ 278 (520)
++..+..+..+.+.. ...+|..++. .+..++..+.+ +..|++. ...++..+..++.
T Consensus 265 ~R~~~~~~~e~~a~~----------t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~ 332 (463)
T KOG1645|consen 265 MRQPEGPLMELVANV----------TINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGI 332 (463)
T ss_pred ccCCCchHhhhhhhh----------ccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcc
Confidence 977643222221111 1233444333 23444444433 4566543 2223333334555
Q ss_pred EEEEeeCC--CEEEEEc--CCe------EE-EEECCCCeeeEEeeccc-ccceE------EEEecCCCCEEE-EEeCCCe
Q 009993 279 VYGLAPHD--TTVASTS--GSD------VY-IWDTNSGCLLTVVNGAH-VGNTK------SLARSHTGDFLF-TGGEDGA 339 (520)
Q Consensus 279 v~~~~~~~--~~l~~~~--d~~------i~-iwd~~~~~~~~~~~~~~-~~~i~------~l~~s~~~~~l~-tg~~dg~ 339 (520)
..++..++ +.++... +.+ +- --|-.+|.++.....++ .+.-+ .+.-.++.++++ +|++.+.
T Consensus 333 cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~ 412 (463)
T KOG1645|consen 333 CISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNE 412 (463)
T ss_pred eeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcce
Confidence 65665332 4444333 211 11 12333444433332223 11111 111223445444 5666788
Q ss_pred EEEEEcccCccccceeeeeeecCCcCCEEEEEec---C-CEEEEEeCCCcEEEEeCC
Q 009993 340 IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE---F-PWLVSAAGDGKLSLIDVR 392 (520)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~-~~l~s~s~dg~i~vwd~~ 392 (520)
+.+||..+. ..++++.- ..+|..+... + .+|++-.+ ..++|+..+
T Consensus 413 lil~D~~s~------evvQ~l~~-~epv~Dicp~~~n~~syLa~LTd-~~v~Iyk~e 461 (463)
T KOG1645|consen 413 LILQDPHSF------EVVQTLAL-SEPVLDICPNDTNGSSYLALLTD-DRVHIYKNE 461 (463)
T ss_pred eEEeccchh------heeeeccc-CcceeecceeecCCcchhhheec-ceEEEEecC
Confidence 999999998 55666543 3688888773 2 46666654 468887654
No 311
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.44 E-value=5.6e-05 Score=74.35 Aligned_cols=158 Identities=17% Similarity=0.172 Sum_probs=104.0
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC--CCCc-eEEEEecCCCEEEEEeCCCcEEEEEcccCcce
Q 009993 141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK--PLGC-TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPH 217 (520)
Q Consensus 141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~--~~~~-~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~ 217 (520)
|...|.--+++..+++++.|+.-|.+.+|+-..++....-. .+.. .+.+++++..++|.|+..|.|.++-+..+.+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 34445555566679999999999999999987776543322 2322 33455688889999999999999987664321
Q ss_pred eeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCC-----cEEEEeeeccCEEEEeeCCCEEE
Q 009993 218 LFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALL-----KCLKVLRHSDWVYGLAPHDTTVA 290 (520)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~-----~~~~~~~~~~~v~~~~~~~~~l~ 290 (520)
.... ....-..|...|++++| ++..+++|...|+|..-.+.+. .....+.....|..++.-..++.
T Consensus 112 ~~~~-------~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LL 184 (726)
T KOG3621|consen 112 DLDY-------VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLL 184 (726)
T ss_pred ccee-------eccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceeh
Confidence 1110 00011237899999999 7788999999999999887762 11122236777888885555555
Q ss_pred EEcCCeEEEEECCCC
Q 009993 291 STSGSDVYIWDTNSG 305 (520)
Q Consensus 291 ~~~d~~i~iwd~~~~ 305 (520)
+++--...+++++.+
T Consensus 185 VStl~r~~Lc~tE~e 199 (726)
T KOG3621|consen 185 VSTLTRCILCQTEAE 199 (726)
T ss_pred Hhhhhhhheeecchh
Confidence 555334445555544
No 312
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.40 E-value=9.6e-05 Score=72.99 Aligned_cols=198 Identities=12% Similarity=-0.011 Sum_probs=106.7
Q ss_pred CCCCeEEEEE--cCCE---EEEEecCC--eEEEEECCCCcEEEEeeecc--CEEEEeeCCCEEEEEc--CC--eE--EEE
Q 009993 236 HEGPITSLAL--DLTR---IYSGSWDM--TVRVWDRALLKCLKVLRHSD--WVYGLAPHDTTVASTS--GS--DV--YIW 300 (520)
Q Consensus 236 h~~~v~~l~~--~~~~---l~s~s~dg--~v~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~l~~~~--d~--~i--~iw 300 (520)
....+.+-.| ||+. +++...+| .|.+.++.+++........+ ....++|+|+.|+... +| .+ ..|
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~ 262 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSF 262 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEe
Confidence 3444555567 5543 23444443 57788888776544433222 2335669998888765 23 33 447
Q ss_pred ECCCC--eeeEEeecccccceEEEEecCCCCEEEEEe-CCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--C
Q 009993 301 DTNSG--CLLTVVNGAHVGNTKSLARSHTGDFLFTGG-EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P 375 (520)
Q Consensus 301 d~~~~--~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~ 375 (520)
++..+ .....+.....+.....+|+|||+.|+..+ .+|...+|.+...... .....+..+...+....|+| +
T Consensus 263 ~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g---~~~~~lt~~~~~~~~p~wSPDG~ 339 (428)
T PRK01029 263 SLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG---QSPRLLTKKYRNSSCPAWSPDGK 339 (428)
T ss_pred ecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc---cceEEeccCCCCccceeECCCCC
Confidence 77653 122233222233446789999999877655 4676555544321000 11233334445667788876 5
Q ss_pred EEEEEeCC---CcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEE-EecC--CCeEEEEe
Q 009993 376 WLVSAAGD---GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIV-CGGE--EGIVRIWN 449 (520)
Q Consensus 376 ~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-sg~~--Dg~v~iwd 449 (520)
.|+..+.+ ..|.+||+.++..... . ..........++++++.|+ ++.. .+.|++||
T Consensus 340 ~Laf~~~~~g~~~I~v~dl~~g~~~~L-------------t-----~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 340 KIAFCSVIKGVRQICVYDLATGRDYQL-------------T-----TSPENKESPSWAIDSLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCeEEc-------------c-----CCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 66655443 4689999876421100 0 0001122345667777555 3332 35688888
Q ss_pred CCchH
Q 009993 450 FSQAF 454 (520)
Q Consensus 450 ~~~~~ 454 (520)
+..+.
T Consensus 402 l~~g~ 406 (428)
T PRK01029 402 LITKK 406 (428)
T ss_pred CCCCC
Confidence 87653
No 313
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=7.5e-06 Score=75.84 Aligned_cols=219 Identities=14% Similarity=0.112 Sum_probs=139.1
Q ss_pred cCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEee----eccCEEEEe--eCCCEEEEEc--CCeEEEEECCCC
Q 009993 235 EHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR----HSDWVYGLA--PHDTTVASTS--GSDVYIWDTNSG 305 (520)
Q Consensus 235 ~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~----~~~~v~~~~--~~~~~l~~~~--d~~i~iwd~~~~ 305 (520)
-|...|+.+.. -.+++++++.||.++.|--..-.-+.... |-..+.++. .++.++.+.+ |..++++|+.+-
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 47788887777 67899999999999999754322222222 556666555 6777777755 789999999876
Q ss_pred eeeEEeecccccceEEEEecCCC--CEEE-EEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEE
Q 009993 306 CLLTVVNGAHVGNTKSLARSHTG--DFLF-TGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSA 380 (520)
Q Consensus 306 ~~~~~~~~~~~~~i~~l~~s~~~--~~l~-tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~ 380 (520)
..+..+........-+...+|.. ..++ +.-.+|.+.++|-..... .....-.-|..+|.++.+.+ +.+++.
T Consensus 87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~----q~~~fkklH~sPV~~i~y~qa~Ds~vSi 162 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC----QDGYFKKLHFSPVKKIRYNQAGDSAVSI 162 (558)
T ss_pred chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC----ccceecccccCceEEEEeeccccceeec
Confidence 65544432221111122223321 1333 344578999999776632 23444456999999999976 688888
Q ss_pred eCCCcEEEEeCCcccccCCCCCC---CceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHH
Q 009993 381 AGDGKLSLIDVRKLLRSGRPTSG---KRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIE 457 (520)
Q Consensus 381 s~dg~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~ 457 (520)
...|.|.-|......+....... +....+..... .........+++++..+.+-+.|..|+++++.++..+.
T Consensus 163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K-----~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPK-----AKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred cccceeEeecCCCcccCccccccccccccchhhcccc-----cccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence 88899999998742111110000 00000111111 11223456788888899999999999999999998877
Q ss_pred HHhhh
Q 009993 458 RRARA 462 (520)
Q Consensus 458 ~~~~~ 462 (520)
.....
T Consensus 238 eiDE~ 242 (558)
T KOG0882|consen 238 EIDEV 242 (558)
T ss_pred hhhcc
Confidence 65443
No 314
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.37 E-value=0.00021 Score=62.96 Aligned_cols=185 Identities=14% Similarity=0.080 Sum_probs=101.6
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCC-------CceEEEEe---cC-----CCEEEEEeCCCcEEEEE
Q 009993 146 LTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPL-------GCTIRAVA---AD-----KKLLVAGGTDGFIHCWR 210 (520)
Q Consensus 146 ~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~-------~~~v~~~~---~~-----~~~l~sg~~dg~i~vwd 210 (520)
.-++|+||+.+||.+...|+|+++|+... .+..+.+. ...|..+. .. ...|++-..+|.++-|-
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence 56799999999999999999999998753 33333321 12333222 11 22566667778777776
Q ss_pred cccCcceeeeccCCccccceEEecc-CCCCeEEEEEcC--CEEEEEec-CCeEEEEECCCCcEEEEeeeccCEEEEe---
Q 009993 211 AVEVLPHLFDISGSEKQNTQFRLWE-HEGPITSLALDL--TRIYSGSW-DMTVRVWDRALLKCLKVLRHSDWVYGLA--- 283 (520)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~--~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~~v~~~~--- 283 (520)
+..+... .-.....+.+.. +...|.++.+++ +.|+.|+. ...-..+. .....+++..
T Consensus 126 vs~gt~q------~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~----------a~~~GLtaWRiL~ 189 (282)
T PF15492_consen 126 VSVGTNQ------GYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK----------ASSCGLTAWRILS 189 (282)
T ss_pred EEcccCC------cceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc----------ccccCceEEEEcC
Confidence 5332110 011122333433 367899999955 45555543 22100000 0111122211
Q ss_pred --eCCCEEEEEcCC------eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993 284 --PHDTTVASTSGS------DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND 348 (520)
Q Consensus 284 --~~~~~l~~~~d~------~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~ 348 (520)
|.-..+....++ +-.+|.+-+...... .......|..|..||||..||+...+|.|.+|++..-
T Consensus 190 ~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~-~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 190 DSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSR-QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred CCCcEEEccccCccccccccccceeeccceeeeec-cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 111221111111 112333222211111 1235678999999999999999999999999999876
No 315
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.36 E-value=3.3e-07 Score=91.33 Aligned_cols=188 Identities=10% Similarity=0.108 Sum_probs=130.4
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCC--cEEEEE
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDG--FIHCWR 210 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg--~i~vwd 210 (520)
.++++.|+...+|++|+-+.++|+.|+..|.|+++++.+|........|+..++-+. .+|..+++.+.-. -..+|+
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 456788999999999999999999999999999999999999999999999999887 4677666655433 467898
Q ss_pred cccCcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCCeEEEEECCCCcEEEEee-------eccCEEE
Q 009993 211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLR-------HSDWVYG 281 (520)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~-------~~~~v~~ 281 (520)
+.+.. .....+ ..-.++.|.. ..-+.|+.-..+.+||++++..+.++- .......
T Consensus 1174 ~~s~~------------~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~ 1237 (1516)
T KOG1832|consen 1174 ASSTG------------GPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAH 1237 (1516)
T ss_pred ccccc------------Cccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccc
Confidence 75421 122222 2234566622 222334444568999999988776632 1222333
Q ss_pred EeeCCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCc
Q 009993 282 LAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC 349 (520)
Q Consensus 282 ~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~ 349 (520)
++|++.+++- || .+||.+..+.+..|.. .. .-..-.|+|.|..++.-++ |||+++..
T Consensus 1238 FsP~D~LIln--dG--vLWDvR~~~aIh~FD~-ft-~~~~G~FHP~g~eVIINSE-----IwD~RTF~ 1294 (1516)
T KOG1832|consen 1238 FSPCDTLILN--DG--VLWDVRIPEAIHRFDQ-FT-DYGGGGFHPSGNEVIINSE-----IWDMRTFK 1294 (1516)
T ss_pred cCCCcceEee--Cc--eeeeeccHHHHhhhhh-he-ecccccccCCCceEEeech-----hhhhHHHH
Confidence 4466666553 22 5899998877777652 22 1223469999999887754 89999873
No 316
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.31 E-value=0.00063 Score=59.08 Aligned_cols=218 Identities=15% Similarity=0.121 Sum_probs=121.9
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceE--EEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccc
Q 009993 150 VLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTI--RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQ 227 (520)
Q Consensus 150 ~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~ 227 (520)
..+++.++..|+.|++...-|..+..++...+-.+... -++.+-...|+.+...|.+.--...++.
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~------------ 168 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYS------------ 168 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCC------------
Confidence 45689999999999999999999988887765333221 1344544556666666666544433321
Q ss_pred cceEEeccC--CCCeEEE-EEcCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEE---Ee-eCCCEEEEEcCCe----
Q 009993 228 NTQFRLWEH--EGPITSL-ALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYG---LA-PHDTTVASTSGSD---- 296 (520)
Q Consensus 228 ~~~~~~~~h--~~~v~~l-~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~---~~-~~~~~l~~~~d~~---- 296 (520)
...+..| .++|.+- .+-+..+..+.-||.+.-+| ..|+.+..+...++|.. .+ |..+.+..+..+.
T Consensus 169 --~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~ 245 (354)
T KOG4649|consen 169 --STEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPATKGPIFMEPCESRPSCQQISLENENCFCAP 245 (354)
T ss_pred --cceehhhhcCCccccCceeccceEEEEEeccEEEEEc-CCCcEEEeecCCCceecccccCCCcceEEEEecCCeEEEe
Confidence 1112212 2333322 12344556666777777777 56666666655555542 22 4444455444333
Q ss_pred -----EEEEECCCCeeeEEeecccccceEEEEec-C---CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCE
Q 009993 297 -----VYIWDTNSGCLLTVVNGAHVGNTKSLARS-H---TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPV 367 (520)
Q Consensus 297 -----i~iwd~~~~~~~~~~~~~~~~~i~~l~~s-~---~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v 367 (520)
-.+|..++|......... -...+++ | ..++|..++.||++.|.-.+.. +.....|.+.+
T Consensus 246 ~p~~ghL~w~~~~g~t~~vy~~p----~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~s--------l~~~~s~~g~l 313 (354)
T KOG4649|consen 246 LPIAGHLLWATQSGTTLHVYLSP----KLRFDLHSPGISYPKLLRRSSGDGKVMILMTSKS--------LAEISSNGGEL 313 (354)
T ss_pred ccccceEEEEecCCcEEEEEeCc----ccceeccCCCCcchhhhhhhcCCCcEEEEEeccc--------ccccccCCCcc
Confidence 334555544333222110 0112222 1 1356778889999888754433 33333444433
Q ss_pred EEE---Ee------cC----CEEEEEeCCCcEEEEeCCcc
Q 009993 368 NSL---AF------EF----PWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 368 ~~l---~~------~~----~~l~s~s~dg~i~vwd~~~~ 394 (520)
..+ .. +| .+|+.|+.|..|+-||+.+.
T Consensus 314 q~~~~~el~~eIFsSPvii~grl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 314 QNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred ceEEEeecCcccccCCeEEccEEEEEEccCeEEEEecccc
Confidence 322 22 23 57899999999999999763
No 317
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.00013 Score=73.32 Aligned_cols=194 Identities=15% Similarity=0.130 Sum_probs=126.2
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCce-EEEEe--cCCCEEEEEeCCCc-----EEEEEcccCc
Q 009993 144 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT-IRAVA--ADKKLLVAGGTDGF-----IHCWRAVEVL 215 (520)
Q Consensus 144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~-v~~~~--~~~~~l~sg~~dg~-----i~vwd~~~~~ 215 (520)
.|+| +++.+..++.|+.+|.|.+.+- .-+.+..++.+... +..+. ...++|++.+.|+. +++|+++...
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 6666 5778999999999998877762 33444777777666 43343 33358888777754 8999986542
Q ss_pred ceeeeccCCccccce--EEecc-----CCCCeEEEEE--cCCEEEEEecCCeEEEEECC--C--C-cEEEEeeeccCEEE
Q 009993 216 PHLFDISGSEKQNTQ--FRLWE-----HEGPITSLAL--DLTRIYSGSWDMTVRVWDRA--L--L-KCLKVLRHSDWVYG 281 (520)
Q Consensus 216 ~~~~~~~~~~~~~~~--~~~~~-----h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~--~--~-~~~~~~~~~~~v~~ 281 (520)
. ..+.... ..+.+ ...++.++++ +-..++.|-.||.|..+.-+ . + +.........+|+.
T Consensus 104 ~-------n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITg 176 (933)
T KOG2114|consen 104 K-------NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITG 176 (933)
T ss_pred C-------CCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCcee
Confidence 1 1111111 12222 2456777777 55779999999999988522 1 1 12222236788999
Q ss_pred Ee--eCCCE-EEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993 282 LA--PHDTT-VASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND 348 (520)
Q Consensus 282 ~~--~~~~~-l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~ 348 (520)
+. .++.. ++++.-..|.+|.+....+.......|+..+.|..+++....+++++ +..+.+|+....
T Consensus 177 L~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 177 LALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGR 245 (933)
T ss_pred eEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCc
Confidence 87 45554 56666788999998854434443346888999999988666455554 345999998766
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.0003 Score=70.93 Aligned_cols=188 Identities=13% Similarity=0.092 Sum_probs=123.8
Q ss_pred eEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCC-eEEEEE-cC-CEEEEEecCC-----
Q 009993 186 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGP-ITSLAL-DL-TRIYSGSWDM----- 257 (520)
Q Consensus 186 ~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~-~~-~~l~s~s~dg----- 257 (520)
.+.++++.+..++.|+.+|.|.+.+-. ......+..+... |..+.. ++ ++|++.+.|+
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s--------------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~ 92 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSS--------------FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPV 92 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEeccc--------------ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCce
Confidence 788899999999999999999887632 2222444555555 555554 33 5788877765
Q ss_pred eEEEEECCC------CcEEEEe---ee-----ccCEEE--EeeCCCEEEEEc-CCeEEEEECCC---CeeeEEeeccccc
Q 009993 258 TVRVWDRAL------LKCLKVL---RH-----SDWVYG--LAPHDTTVASTS-GSDVYIWDTNS---GCLLTVVNGAHVG 317 (520)
Q Consensus 258 ~v~iwd~~~------~~~~~~~---~~-----~~~v~~--~~~~~~~l~~~~-d~~i~iwd~~~---~~~~~~~~~~~~~ 317 (520)
.+++||++. .+++... .+ +.++.+ ++.+-+.+|+|- +|.|..+.-.- ......+......
T Consensus 93 llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~ 172 (933)
T KOG2114|consen 93 LLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKE 172 (933)
T ss_pred EEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCC
Confidence 499999863 3444222 21 233444 446778888888 89998885321 1112222223467
Q ss_pred ceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993 318 NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 318 ~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 393 (520)
+|+.+++..++..++-......|.+|.+.... .....+..|..+++|..+++ ..+++++.. .+.+|+...
T Consensus 173 pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-----p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~ 244 (933)
T KOG2114|consen 173 PITGLALRSDGKSVLFVATTEQVMLYSLSGRT-----PSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDG 244 (933)
T ss_pred CceeeEEecCCceeEEEEecceeEEEEecCCC-----cceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCC
Confidence 99999999888873333345679999998552 23555778888999999975 235555544 599999875
No 319
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.20 E-value=0.0023 Score=60.92 Aligned_cols=216 Identities=15% Similarity=0.158 Sum_probs=126.7
Q ss_pred eEEEEECCCCcEEEEeCC-CCceEEEEe----c-----CCCEEEEEeC----------CCcEEEEEcccCcceeeeccCC
Q 009993 165 IVRMWHLEDGFSIASSKP-LGCTIRAVA----A-----DKKLLVAGGT----------DGFIHCWRAVEVLPHLFDISGS 224 (520)
Q Consensus 165 ~v~vwd~~~~~~~~~~~~-~~~~v~~~~----~-----~~~~l~sg~~----------dg~i~vwd~~~~~~~~~~~~~~ 224 (520)
.|++.|..+.+.+.++.- ....+.++. . ...++++|.. .|.|.++++.+... .
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~-------~ 75 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE-------N 75 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS----------
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccc-------c
Confidence 578888877777765531 223333332 2 1467777653 28899999876300 0
Q ss_pred ccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCc-EEEEee--eccCEEEEeeCCCEEEEEc-CCeEEEE
Q 009993 225 EKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLK-CLKVLR--HSDWVYGLAPHDTTVASTS-GSDVYIW 300 (520)
Q Consensus 225 ~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~--~~~~v~~~~~~~~~l~~~~-d~~i~iw 300 (520)
...-.........++|++++.-+++++.+. ++.|.+|++...+ ....-. ....+.++...++++++|. ...+.++
T Consensus 76 ~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 76 NFKLKLIHSTEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLL 154 (321)
T ss_dssp --EEEEEEEEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEE
T ss_pred ceEEEEEEEEeecCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEE
Confidence 001112222345789999998565655555 4799999998877 444433 4557888888788888888 6777766
Q ss_pred --ECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccc----c-ceeeeeeecCCcCCEEEE---
Q 009993 301 --DTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE----A-NVLLVATWIPHTGPVNSL--- 370 (520)
Q Consensus 301 --d~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~----~-~~~~~~~~~~h~~~v~~l--- 370 (520)
+....+....-.......++++.|-++++.++++..+|.+.++........ . .......+. ....|+++
T Consensus 155 ~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~ 233 (321)
T PF03178_consen 155 RYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRG 233 (321)
T ss_dssp EEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE-
T ss_pred EEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEE
Confidence 543332322222234556889999877789999999999999988642111 1 122222222 23467777
Q ss_pred EecC----------CEEEEEeCCCcEEEE
Q 009993 371 AFEF----------PWLVSAAGDGKLSLI 389 (520)
Q Consensus 371 ~~~~----------~~l~s~s~dg~i~vw 389 (520)
.+.+ ..++.++.+|.|.+.
T Consensus 234 ~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 234 SLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp -SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EeeecCCCCcccccceEEEEecCCEEEEE
Confidence 3323 248888899998844
No 320
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.18 E-value=0.00081 Score=63.85 Aligned_cols=127 Identities=13% Similarity=0.126 Sum_probs=84.8
Q ss_pred CeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc---CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEE
Q 009993 257 MTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS---GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFL 331 (520)
Q Consensus 257 g~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 331 (520)
.++.+++++...+.-.....++|..+. |.++.+++.+ +..+.++|++.. ....+ ....=+.+.|+|.++++
T Consensus 255 snLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~---Pe~~rNT~~fsp~~r~i 330 (561)
T COG5354 255 SNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF---PEQKRNTIFFSPHERYI 330 (561)
T ss_pred ceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec---CCcccccccccCcccEE
Confidence 467888887444333334578888877 6777666544 688999999877 33333 33445678899999999
Q ss_pred EEEeCC---CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeC------CCcEEEEeCCcc
Q 009993 332 FTGGED---GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG------DGKLSLIDVRKL 394 (520)
Q Consensus 332 ~tg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~------dg~i~vwd~~~~ 394 (520)
+.++-| |.|-+||....- ..+..+.+.. .+-+.|+| +++.+... |..|+|||+...
T Consensus 331 l~agF~nl~gni~i~~~~~rf-----~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 331 LFAGFDNLQGNIEIFDPAGRF-----KVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred EEecCCccccceEEeccCCce-----EEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 987765 679999987762 3333454433 33456765 45555433 889999999753
No 321
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.17 E-value=0.0052 Score=55.99 Aligned_cols=183 Identities=20% Similarity=0.212 Sum_probs=113.9
Q ss_pred Eec-CCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCC
Q 009993 190 VAA-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRAL 266 (520)
Q Consensus 190 ~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~ 266 (520)
+.+ ++.++++-...+.|..|+..++... ...+ .. ...+.+ .++.++.+..++ +.++|..+
T Consensus 7 ~d~~~g~l~~~D~~~~~i~~~~~~~~~~~------------~~~~---~~-~~G~~~~~~~g~l~v~~~~~-~~~~d~~~ 69 (246)
T PF08450_consen 7 WDPRDGRLYWVDIPGGRIYRVDPDTGEVE------------VIDL---PG-PNGMAFDRPDGRLYVADSGG-IAVVDPDT 69 (246)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTTEEE------------EEES---SS-EEEEEEECTTSEEEEEETTC-EEEEETTT
T ss_pred EECCCCEEEEEEcCCCEEEEEECCCCeEE------------EEec---CC-CceEEEEccCCEEEEEEcCc-eEEEecCC
Confidence 444 5666666667888998988765321 1111 12 555566 357777777655 45559988
Q ss_pred CcEEEEeee------ccCEEEEe--eCCCEEEEEc-C--------CeEEEEECCCCeeeEEeecccccceEEEEecCCCC
Q 009993 267 LKCLKVLRH------SDWVYGLA--PHDTTVASTS-G--------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD 329 (520)
Q Consensus 267 ~~~~~~~~~------~~~v~~~~--~~~~~l~~~~-d--------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~ 329 (520)
++....... ....+.+. ++|++.++.. . |.|..++.. ++...... .....+.++|+|+++
T Consensus 70 g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~pNGi~~s~dg~ 146 (246)
T PF08450_consen 70 GKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGFPNGIAFSPDGK 146 (246)
T ss_dssp TEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESSEEEEEEETTSS
T ss_pred CcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--CcccccceEECCcch
Confidence 866554442 22344444 7888777655 2 458888887 55444332 456678999999999
Q ss_pred EEE-EEeCCCeEEEEEcccCcc-ccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCC
Q 009993 330 FLF-TGGEDGAIHMYEIINDCT-EANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR 392 (520)
Q Consensus 330 ~l~-tg~~dg~i~iwd~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~ 392 (520)
.|+ +-+..+.|..|++..... .........+....+....++++. +..++....+.|.++|..
T Consensus 147 ~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 147 TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 765 566788899999875432 222222333333334578888864 566666678899999987
No 322
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.14 E-value=0.0029 Score=68.21 Aligned_cols=230 Identities=12% Similarity=0.066 Sum_probs=137.6
Q ss_pred cEEEEEEccCCCEEE--EEeCCC--eEEEEECCCCc---EEEEeC-----CCCceEEEEe--cCCCEEEEEeCCCcEEEE
Q 009993 144 AVLTVFVLASAKLLF--TSGYDS--IVRMWHLEDGF---SIASSK-----PLGCTIRAVA--ADKKLLVAGGTDGFIHCW 209 (520)
Q Consensus 144 ~V~~l~~~~~~~~l~--sgs~dg--~v~vwd~~~~~---~~~~~~-----~~~~~v~~~~--~~~~~l~sg~~dg~i~vw 209 (520)
.+...+|.+..+.++ ++.... .|.+-...... .+..+. .....|.++. ++...++.+..+|.|.+.
T Consensus 23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~ 102 (928)
T PF04762_consen 23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILV 102 (928)
T ss_pred ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEE
Confidence 556667776554333 332222 23443333222 333332 2345677777 788889999999999988
Q ss_pred ----EcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEE-------------
Q 009993 210 ----RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCL------------- 270 (520)
Q Consensus 210 ----d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~------------- 270 (520)
+..+. .......-...|.+++| |+..|+..+.++++.+-+. +.+.+
T Consensus 103 ~~~~~~~~~--------------~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~ 167 (928)
T PF04762_consen 103 REDPDPDED--------------EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGES 167 (928)
T ss_pred EccCCCCCc--------------eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCC
Confidence 43322 22223345678999999 6678888888888877542 11100
Q ss_pred -----------EEee-------------------------eccCEEEEe--eCCCEEEEEc-C------CeEEEEECCCC
Q 009993 271 -----------KVLR-------------------------HSDWVYGLA--PHDTTVASTS-G------SDVYIWDTNSG 305 (520)
Q Consensus 271 -----------~~~~-------------------------~~~~v~~~~--~~~~~l~~~~-d------~~i~iwd~~~~ 305 (520)
..|. ..+.-..++ .||.++++.+ + ..++||+-+ |
T Consensus 168 ~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G 246 (928)
T PF04762_consen 168 KHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-G 246 (928)
T ss_pred ceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-c
Confidence 0000 011112233 7899998876 2 359999976 6
Q ss_pred eeeEEeecccccceEEEEecCCCCEEEEEeC---CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEE
Q 009993 306 CLLTVVNGAHVGNTKSLARSHTGDFLFTGGE---DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSA 380 (520)
Q Consensus 306 ~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~ 380 (520)
.....-+ .-.+--.+++|-|.|+++|+.-. ...|.+|.-+.-. .. .....+......|..+.|+. ..|+..
T Consensus 247 ~L~stSE-~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr-hg--eF~l~~~~~~~~v~~l~Wn~ds~iLAv~ 322 (928)
T PF04762_consen 247 ELQSTSE-PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR-HG--EFTLRFDPEEEKVIELAWNSDSEILAVW 322 (928)
T ss_pred eEEeccc-cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE-ee--eEecCCCCCCceeeEEEECCCCCEEEEE
Confidence 5544433 33444557899999999998754 3457777643331 11 12222234566899999965 677776
Q ss_pred eCCCcEEEEeCCcc
Q 009993 381 AGDGKLSLIDVRKL 394 (520)
Q Consensus 381 s~dg~i~vwd~~~~ 394 (520)
-.|. |.+|-..+.
T Consensus 323 ~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 323 LEDR-VQLWTRSNY 335 (928)
T ss_pred ecCC-ceEEEeeCC
Confidence 6555 999988764
No 323
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.11 E-value=0.0061 Score=61.82 Aligned_cols=186 Identities=13% Similarity=0.030 Sum_probs=113.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeCCCC-ceEE----------EEecCCCEEEEEeCCCcEEEEEcccCcceeeecc
Q 009993 154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-CTIR----------AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS 222 (520)
Q Consensus 154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~-~~v~----------~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 222 (520)
+..|+.++.++.|.-.|..+|+.+..+.... ..+. .+...+..++.++.|+.+...|..+|+..- ...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W-~~~ 147 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVW-SKK 147 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEe-ecc
Confidence 5577778888999999999999887764321 1111 112234678888899999999998885321 110
Q ss_pred CCccccceEEeccCC--CCeEE-EEEcCCEEEEEec------CCeEEEEECCCCcEEEEeee--cc--------------
Q 009993 223 GSEKQNTQFRLWEHE--GPITS-LALDLTRIYSGSW------DMTVRVWDRALLKCLKVLRH--SD-------------- 277 (520)
Q Consensus 223 ~~~~~~~~~~~~~h~--~~v~~-l~~~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~--~~-------------- 277 (520)
...+. ..+++ -.+.++.++.+.. +|.|..+|.++|+.+..+.. ..
T Consensus 148 ----------~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~ 217 (527)
T TIGR03075 148 ----------NGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGE 217 (527)
T ss_pred ----------cccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccc
Confidence 00111 11111 1123445555543 68999999999998876541 10
Q ss_pred ----------------CE---EEEeeCCCEEEEEc-C-----C-----------eEEEEECCCCeeeEEeecccc-----
Q 009993 278 ----------------WV---YGLAPHDTTVASTS-G-----S-----------DVYIWDTNSGCLLTVVNGAHV----- 316 (520)
Q Consensus 278 ----------------~v---~~~~~~~~~l~~~~-d-----~-----------~i~iwd~~~~~~~~~~~~~~~----- 316 (520)
.+ .++.+...+++.+. + + .|.-.|+++|+....+...|.
T Consensus 218 ~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~ 297 (527)
T TIGR03075 218 PGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDY 297 (527)
T ss_pred cccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccc
Confidence 01 13334455555554 1 1 577889999998877763221
Q ss_pred ---cceEEEEecCCCC---EEEEEeCCCeEEEEEcccCcc
Q 009993 317 ---GNTKSLARSHTGD---FLFTGGEDGAIHMYEIINDCT 350 (520)
Q Consensus 317 ---~~i~~l~~s~~~~---~l~tg~~dg~i~iwd~~~~~~ 350 (520)
....-+....+|+ .++.+..+|.+++.|.++++.
T Consensus 298 d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 298 DGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred cCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 1122223334665 788999999999999998854
No 324
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.10 E-value=0.0033 Score=63.43 Aligned_cols=230 Identities=15% Similarity=0.193 Sum_probs=133.9
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEeCCCCce-----EEE-EecCCCEEEEEe---------CCCcEEEEEcccCcceee
Q 009993 155 KLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT-----IRA-VAADKKLLVAGG---------TDGFIHCWRAVEVLPHLF 219 (520)
Q Consensus 155 ~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~-----v~~-~~~~~~~l~sg~---------~dg~i~vwd~~~~~~~~~ 219 (520)
..++.++.++.|.-+|.++|+.+..+...... +.+ ..-.+..++.++ .+|.+..+|..+|+.. +
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~-W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLL-W 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCcee-e
Confidence 67888889999999999999998877543220 110 111234555554 3678888999888632 2
Q ss_pred eccCCccccceEE-------eccCC-CCeE-EEEE--cCCEEEEEecCC------------------eEEEEECCCCcEE
Q 009993 220 DISGSEKQNTQFR-------LWEHE-GPIT-SLAL--DLTRIYSGSWDM------------------TVRVWDRALLKCL 270 (520)
Q Consensus 220 ~~~~~~~~~~~~~-------~~~h~-~~v~-~l~~--~~~~l~s~s~dg------------------~v~iwd~~~~~~~ 270 (520)
............. ...+. ..|. ..++ .++.++.++.++ .|.-+|..+++..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 2111000000000 00111 1111 2333 357788887665 7999999999998
Q ss_pred EEeeec---cC---------EEEEe-eCCC---EEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEE
Q 009993 271 KVLRHS---DW---------VYGLA-PHDT---TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFT 333 (520)
Q Consensus 271 ~~~~~~---~~---------v~~~~-~~~~---~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~t 333 (520)
..+... .. +..+. .++. .+++++ +|.+..+|.++|+.+...... ...++.+| ..++.
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~~vyv 343 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--GLVYL 343 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--ceEEE
Confidence 887521 10 11111 2333 566666 899999999999998876521 11233344 33333
Q ss_pred E------------------eCCCeEEEEEcccCccccceeeeeeecCC--c------CC--EEEEEecCCEEEEEeCCCc
Q 009993 334 G------------------GEDGAIHMYEIINDCTEANVLLVATWIPH--T------GP--VNSLAFEFPWLVSAAGDGK 385 (520)
Q Consensus 334 g------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~h--~------~~--v~~l~~~~~~l~s~s~dg~ 385 (520)
+ ..+|.+.-.|+.+++. +...... . .+ ...+...++.|+.++.||.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~------~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~ 417 (488)
T cd00216 344 GAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKV------VWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGY 417 (488)
T ss_pred ccccccccCcccccCCCCCCCceEEEEEeCCCCcE------eeEeeCCccccccccCCcccCcceEecCCeEEEECCCCe
Confidence 2 2357788888888842 2222111 0 11 1234556789999999999
Q ss_pred EEEEeCCccccc
Q 009993 386 LSLIDVRKLLRS 397 (520)
Q Consensus 386 i~vwd~~~~~~~ 397 (520)
|+.+|..++...
T Consensus 418 l~ald~~tG~~l 429 (488)
T cd00216 418 FRAFDATTGKEL 429 (488)
T ss_pred EEEEECCCCcee
Confidence 999999986443
No 325
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.07 E-value=0.0083 Score=55.72 Aligned_cols=229 Identities=13% Similarity=0.151 Sum_probs=131.4
Q ss_pred cCCCEEEEEeCCCeEEEEECCC-CcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCcccc
Q 009993 152 ASAKLLFTSGYDSIVRMWHLED-GFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQN 228 (520)
Q Consensus 152 ~~~~~l~sgs~dg~v~vwd~~~-~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 228 (520)
..++.|+.|..+| +.+++... .......... .|..+. ++-+.+++-+ |+.+.++++..-..............
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~--~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLS--SITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecc--eEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3578899999988 99999832 3332222222 255555 5556555554 49999999866432211000000000
Q ss_pred -ceEEeccCCCCeEEEEE----cCCEEEEEecCCeEEEEECCCC-----cEEEEeeeccCEEEEeeCCCEEEEEcCCeEE
Q 009993 229 -TQFRLWEHEGPITSLAL----DLTRIYSGSWDMTVRVWDRALL-----KCLKVLRHSDWVYGLAPHDTTVASTSGSDVY 298 (520)
Q Consensus 229 -~~~~~~~h~~~v~~l~~----~~~~l~s~s~dg~v~iwd~~~~-----~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~ 298 (520)
...........+..++. .+...+.....++|.+|..... +..+.+..+..+.++...++.++.|......
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~ 160 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFY 160 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceE
Confidence 00011123345555551 3444444555568998877653 4566667888899999889999999888899
Q ss_pred EEECCCCeeeEEeeccc-----------ccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCE
Q 009993 299 IWDTNSGCLLTVVNGAH-----------VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPV 367 (520)
Q Consensus 299 iwd~~~~~~~~~~~~~~-----------~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v 367 (520)
+.|+.++.....+.... ..++..+.. +++.+|++- |..-.+.|...... . .....+ ...+
T Consensus 161 ~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G~~~-r--~~~i~W---~~~p 231 (275)
T PF00780_consen 161 LIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNGEPS-R--KSTIQW---SSAP 231 (275)
T ss_pred EEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCCCcC-c--ccEEEc---CCch
Confidence 99999776544432111 112333333 345555543 33334445433311 1 112222 2356
Q ss_pred EEEEecCCEEEEEeCCCcEEEEeCCcc
Q 009993 368 NSLAFEFPWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 368 ~~l~~~~~~l~s~s~dg~i~vwd~~~~ 394 (520)
.++.+..++|++.+.++ |.||++.++
T Consensus 232 ~~~~~~~pyli~~~~~~-iEV~~~~~~ 257 (275)
T PF00780_consen 232 QSVAYSSPYLIAFSSNS-IEVRSLETG 257 (275)
T ss_pred hEEEEECCEEEEECCCE-EEEEECcCC
Confidence 77888888888877755 999999985
No 326
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.07 E-value=0.0088 Score=54.64 Aligned_cols=221 Identities=14% Similarity=0.091 Sum_probs=131.2
Q ss_pred EEEEEcc-CCCEEEEEeCCCe-EEEEECCCCcEEEEeCCCCce----EEEEecCCCEEEEEeC-----CCcEEEEEcccC
Q 009993 146 LTVFVLA-SAKLLFTSGYDSI-VRMWHLEDGFSIASSKPLGCT----IRAVAADKKLLVAGGT-----DGFIHCWRAVEV 214 (520)
Q Consensus 146 ~~l~~~~-~~~~l~sgs~dg~-v~vwd~~~~~~~~~~~~~~~~----v~~~~~~~~~l~sg~~-----dg~i~vwd~~~~ 214 (520)
..++.+| .+..++.+-.-|+ ..+||..+++....+...... --.++++|++|++.-. .|.|-|||...+
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 3567788 4566667766664 678999999887766432222 2267899999998644 488999998744
Q ss_pred cceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEE------------------ecCCeEEEEECCCCcEEEEee
Q 009993 215 LPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSG------------------SWDMTVRVWDRALLKCLKVLR 274 (520)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~------------------s~dg~v~iwd~~~~~~~~~~~ 274 (520)
. ..+..+..|.-.-..+.+ |+..|+.+ +.+-++...|..+|+.+....
T Consensus 88 ~------------~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~ 155 (305)
T PF07433_consen 88 Y------------RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVE 155 (305)
T ss_pred c------------EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeee
Confidence 2 233344444433444444 45444443 223456667778888777643
Q ss_pred -----eccCEEEEe--eCCCEEEEEc-CCe-------EEEEECCCCeeeEEee------cccccceEEEEecCCCCEEEE
Q 009993 275 -----HSDWVYGLA--PHDTTVASTS-GSD-------VYIWDTNSGCLLTVVN------GAHVGNTKSLARSHTGDFLFT 333 (520)
Q Consensus 275 -----~~~~v~~~~--~~~~~l~~~~-d~~-------i~iwd~~~~~~~~~~~------~~~~~~i~~l~~s~~~~~l~t 333 (520)
|...|.-++ .+|..++... .|. |.+++... .+..+. ..-.+.+-+|++++++.++++
T Consensus 156 Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ 233 (305)
T PF07433_consen 156 LPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAV 233 (305)
T ss_pred cCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEE
Confidence 455666666 5555555543 222 44444333 222221 123467889999999987755
Q ss_pred -EeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEE
Q 009993 334 -GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSL 388 (520)
Q Consensus 334 -g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~v 388 (520)
+=..+.+.+||..++ ..+.... -..+..++..+.-++..+..|.+..
T Consensus 234 tsPrGg~~~~~d~~tg------~~~~~~~--l~D~cGva~~~~~f~~ssG~G~~~~ 281 (305)
T PF07433_consen 234 TSPRGGRVAVWDAATG------RLLGSVP--LPDACGVAPTDDGFLVSSGQGQLIR 281 (305)
T ss_pred ECCCCCEEEEEECCCC------CEeeccc--cCceeeeeecCCceEEeCCCccEEE
Confidence 445688999999998 3433321 2245666665433444444455433
No 327
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.00033 Score=64.42 Aligned_cols=153 Identities=18% Similarity=0.062 Sum_probs=90.5
Q ss_pred EEEEECCCCcEEEEeCCCCceEEEEe--cCCC-EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEE
Q 009993 166 VRMWHLEDGFSIASSKPLGCTIRAVA--ADKK-LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITS 242 (520)
Q Consensus 166 v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 242 (520)
|++.+..+.+...-+..++..|..++ |..+ ++..++.+..|+|.|+++.. ....+..| ..+.+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-------------~vssy~a~-~~~wS 240 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-------------VVSSYIAY-NQIWS 240 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-------------eeeheecc-CCcee
Confidence 44444444444444556666666554 5555 78899999999999998752 34445555 78999
Q ss_pred EEE---cCCEEEEEecCCeEEEEECCCCcEEE-Eee---eccCEEEEe--------eCCCEEEEEcCCeEEEEECC--CC
Q 009993 243 LAL---DLTRIYSGSWDMTVRVWDRALLKCLK-VLR---HSDWVYGLA--------PHDTTVASTSGSDVYIWDTN--SG 305 (520)
Q Consensus 243 l~~---~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~---~~~~v~~~~--------~~~~~l~~~~d~~i~iwd~~--~~ 305 (520)
++| +.++++.|-..|.|.+||++..+-.. .+. ...+|..++ +.+.+++... -.+..|+.. .+
T Consensus 241 C~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~l-t~l~f~ei~~s~~ 319 (463)
T KOG1645|consen 241 CCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFAL-TVLQFYEIVFSAE 319 (463)
T ss_pred eeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeee-hhhhhhhhhcccc
Confidence 999 45789999999999999998654322 111 334455544 2233333322 233444432 22
Q ss_pred eeeEEeecccccceEEEEecCCCCEEEE
Q 009993 306 CLLTVVNGAHVGNTKSLARSHTGDFLFT 333 (520)
Q Consensus 306 ~~~~~~~~~~~~~i~~l~~s~~~~~l~t 333 (520)
......+.+..+...++.+.+..+.++.
T Consensus 320 ~~p~vlele~pG~cismqy~~~snh~l~ 347 (463)
T KOG1645|consen 320 CLPCVLELEPPGICISMQYHGVSNHLLL 347 (463)
T ss_pred CCCcccccCCCcceeeeeecCccceEEE
Confidence 2222222234566667777765554443
No 328
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.05 E-value=0.0016 Score=68.43 Aligned_cols=205 Identities=15% Similarity=0.128 Sum_probs=124.5
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEE-EEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEc----ccCcc
Q 009993 142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI-ASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRA----VEVLP 216 (520)
Q Consensus 142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~----~~~~~ 216 (520)
.+.|.++.|..++.-++.+..+|.|.+-|.++.... ......+....+++||+..++..+.++++.+-.- -...+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 378999999999999999999999999998876432 2233445566677799999999888888765322 11110
Q ss_pred e---------ee---------eccCCccccceEEecc---------CCCCeEEEEE--cCCEEEEE-----ecCCeEEEE
Q 009993 217 H---------LF---------DISGSEKQNTQFRLWE---------HEGPITSLAL--DLTRIYSG-----SWDMTVRVW 262 (520)
Q Consensus 217 ~---------~~---------~~~~~~~~~~~~~~~~---------h~~~v~~l~~--~~~~l~s~-----s~dg~v~iw 262 (520)
. .. +..++........... -.+.=+++.| ||.++++. ...+.|++|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 0 00 0000000000000000 1112245788 77787772 333799999
Q ss_pred ECCCCcEEEEee---eccCEEEEeeCCCEEEEEc----CCeEEEEECCCCe---eeEEeecccccceEEEEecCCCCEEE
Q 009993 263 DRALLKCLKVLR---HSDWVYGLAPHDTTVASTS----GSDVYIWDTNSGC---LLTVVNGAHVGNTKSLARSHTGDFLF 332 (520)
Q Consensus 263 d~~~~~~~~~~~---~~~~v~~~~~~~~~l~~~~----d~~i~iwd~~~~~---~~~~~~~~~~~~i~~l~~s~~~~~l~ 332 (520)
|.+ |..-..-. ......+..|.|..+++-. ++.|.+|..+.-+ ....++ .....+..++|+.++..|+
T Consensus 228 drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p-~de~~ve~L~Wns~sdiLA 305 (1265)
T KOG1920|consen 228 DRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFP-LDEKEVEELAWNSNSDILA 305 (1265)
T ss_pred ccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCc-ccccchheeeecCCCCcee
Confidence 987 33222211 2233444558888888754 4678888765422 121222 1233489999999999998
Q ss_pred E---EeCCCeEEEEEcccC
Q 009993 333 T---GGEDGAIHMYEIIND 348 (520)
Q Consensus 333 t---g~~dg~i~iwd~~~~ 348 (520)
+ ......|++|-+.+-
T Consensus 306 v~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 306 VVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eeecccccceEEEEEecCe
Confidence 7 555566999988765
No 329
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.04 E-value=0.0029 Score=61.74 Aligned_cols=88 Identities=22% Similarity=0.249 Sum_probs=66.6
Q ss_pred EEEECCCC--eeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-
Q 009993 298 YIWDTNSG--CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF- 374 (520)
Q Consensus 298 ~iwd~~~~--~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~- 374 (520)
.+|+...+ +.+....-.....+.+++++|+.+.++.|+.||+|.+||...+ +..+..+.-.++.++|+|
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~--------~t~~~ka~~~P~~iaWHp~ 310 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG--------VTLLAKAEFIPTLIAWHPD 310 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCC--------eeeeeeecccceEEEEcCC
Confidence 44554433 2333333357889999999999999999999999999998776 222223345678999977
Q ss_pred -CEEEEEeCCCcEEEEeCCc
Q 009993 375 -PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 375 -~~l~s~s~dg~i~vwd~~~ 393 (520)
..+++|+..|.+.+||+.-
T Consensus 311 gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 311 GAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred CcEEEEEcCCceEEEEEeec
Confidence 4999999999999999874
No 330
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.96 E-value=0.0068 Score=59.62 Aligned_cols=143 Identities=9% Similarity=0.078 Sum_probs=87.8
Q ss_pred EEEecCCCE-EEEEeCC---CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEE-EEecC--Ce
Q 009993 188 RAVAADKKL-LVAGGTD---GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIY-SGSWD--MT 258 (520)
Q Consensus 188 ~~~~~~~~~-l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~-s~s~d--g~ 258 (520)
-.++|+|+. ++..+.+ ..|.++|+.++.. ..+....+......| |++.++ +.+.+ ..
T Consensus 193 p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--------------~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 258 (419)
T PRK04043 193 PKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--------------EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPD 258 (419)
T ss_pred EEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--------------EEEecCCCcEEeeEECCCCCEEEEEEccCCCcE
Confidence 456799984 5544443 4588888877632 122223344445556 776654 34333 46
Q ss_pred EEEEECCCCcEEEEeeecc--CEEEEeeCCCEEEEEcC--C--eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEE
Q 009993 259 VRVWDRALLKCLKVLRHSD--WVYGLAPHDTTVASTSG--S--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLF 332 (520)
Q Consensus 259 v~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~l~~~~d--~--~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 332 (520)
|.++|+.+++......+.. .-..++|+|+.++..++ + .|++.|+.+++..+....+. ....|+|+|+.++
T Consensus 259 Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~----~~~~~SPDG~~Ia 334 (419)
T PRK04043 259 IYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK----NNSSVSTYKNYIV 334 (419)
T ss_pred EEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC----cCceECCCCCEEE
Confidence 8888988876544333332 22346699988877763 2 68999998887644432221 1248999999887
Q ss_pred EEeCC---------CeEEEEEcccC
Q 009993 333 TGGED---------GAIHMYEIIND 348 (520)
Q Consensus 333 tg~~d---------g~i~iwd~~~~ 348 (520)
..+.. ..|.+.|+.++
T Consensus 335 ~~~~~~~~~~~~~~~~I~v~d~~~g 359 (419)
T PRK04043 335 YSSRETNNEFGKNTFNLYLISTNSD 359 (419)
T ss_pred EEEcCCCcccCCCCcEEEEEECCCC
Confidence 65543 36788888776
No 331
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.95 E-value=0.0034 Score=57.23 Aligned_cols=198 Identities=23% Similarity=0.317 Sum_probs=117.6
Q ss_pred ccHHHhhhhhccccccEEEEEEccCCCEEEEEeC-----CCeEEEEECC-CCcEEEEeCCCCceEEE--EecCCCEEEEE
Q 009993 129 KSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGY-----DSIVRMWHLE-DGFSIASSKPLGCTIRA--VAADKKLLVAG 200 (520)
Q Consensus 129 ~~W~~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~-----dg~v~vwd~~-~~~~~~~~~~~~~~v~~--~~~~~~~l~sg 200 (520)
.+|-.--+.|.||. .|++||++|+|.-. .|.|-|||.. +-..+..+..|...-.. +.+++..|+++
T Consensus 43 ~~~a~~gRHFyGHg------~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 43 RLWAPPGRHFYGHG------VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred EEcCCCCCEEecCE------EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence 33445566788884 69999999998643 5889999998 56777888766544333 45888777765
Q ss_pred eC-------CCcEEEEEcccCcceeeec-cCCccccceEEe--ccCCCCeEEEEEcC-CEEEEEec-CC-------eEEE
Q 009993 201 GT-------DGFIHCWRAVEVLPHLFDI-SGSEKQNTQFRL--WEHEGPITSLALDL-TRIYSGSW-DM-------TVRV 261 (520)
Q Consensus 201 ~~-------dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~--~~h~~~v~~l~~~~-~~l~s~s~-dg-------~v~i 261 (520)
-. .|..++ |+.+..+.+.-+ ...........+ .-|...|..+++++ ..++.|.. .| -|-+
T Consensus 117 NGGI~Thpd~GR~kL-Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~ 195 (305)
T PF07433_consen 117 NGGIETHPDSGRAKL-NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVAL 195 (305)
T ss_pred cCCCccCcccCceec-ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEE
Confidence 31 123322 444444333333 111222233345 34778899999833 33333322 21 1233
Q ss_pred EECCCCcEEEEee--------eccCEEEEe--eCCCEEEEEc--CCeEEEEECCCCeeeEEeecccccceEEEEecCCCC
Q 009993 262 WDRALLKCLKVLR--------HSDWVYGLA--PHDTTVASTS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD 329 (520)
Q Consensus 262 wd~~~~~~~~~~~--------~~~~v~~~~--~~~~~l~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~ 329 (520)
++. ++.+..+. ....+-+|+ .++..+++++ .+.+.+||..+++.+.... -..+..++-.+++
T Consensus 196 ~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~---l~D~cGva~~~~~- 269 (305)
T PF07433_consen 196 HRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP---LPDACGVAPTDDG- 269 (305)
T ss_pred EcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc---cCceeeeeecCCc-
Confidence 332 22222222 346677777 5677888877 7899999999999887754 3345666666666
Q ss_pred EEEEEeCCCeE
Q 009993 330 FLFTGGEDGAI 340 (520)
Q Consensus 330 ~l~tg~~dg~i 340 (520)
++++.+ .|.+
T Consensus 270 f~~ssG-~G~~ 279 (305)
T PF07433_consen 270 FLVSSG-QGQL 279 (305)
T ss_pred eEEeCC-CccE
Confidence 555544 4443
No 332
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.92 E-value=0.014 Score=51.83 Aligned_cols=229 Identities=14% Similarity=0.065 Sum_probs=123.4
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCC--cEEEEeCCC-----CceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeee
Q 009993 148 VFVLASAKLLFTSGYDSIVRMWHLEDG--FSIASSKPL-----GCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD 220 (520)
Q Consensus 148 l~~~~~~~~l~sgs~dg~v~vwd~~~~--~~~~~~~~~-----~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 220 (520)
++.+.+|++||.- .|..|-|=...+. ..+...... .-.-.+++||+..||.+...|+|+++|+.... ++.
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~--lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE--LFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce--eEE
Confidence 5667888877765 4666666544332 122222111 22345778999999999999999999987643 333
Q ss_pred ccCCccccceEEeccCCCCeEEEEE-cC-------CEEEEEecCCeEEEEECCC-----CcEEEEee----eccCEEEEe
Q 009993 221 ISGSEKQNTQFRLWEHEGPITSLAL-DL-------TRIYSGSWDMTVRVWDRAL-----LKCLKVLR----HSDWVYGLA 283 (520)
Q Consensus 221 ~~~~~~~~~~~~~~~h~~~v~~l~~-~~-------~~l~s~s~dg~v~iwd~~~-----~~~~~~~~----~~~~v~~~~ 283 (520)
+...... ...-...|..+.| +. ..|++-..+|.++-|-+.. .+..+.+. .+..|.++.
T Consensus 80 I~p~~~~-----~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~v 154 (282)
T PF15492_consen 80 IPPAMSF-----PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAV 154 (282)
T ss_pred cCccccc-----CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEE
Confidence 2221110 1123466777777 21 2477777888888776532 23444444 466788777
Q ss_pred --eCCCEEEEEc-C-CeEEEEECCCCeeeEEeecccccceEEEEe---cCCCCEEEEEeCCCe------EEEEEcccCcc
Q 009993 284 --PHDTTVASTS-G-SDVYIWDTNSGCLLTVVNGAHVGNTKSLAR---SHTGDFLFTGGEDGA------IHMYEIINDCT 350 (520)
Q Consensus 284 --~~~~~l~~~~-d-~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~---s~~~~~l~tg~~dg~------i~iwd~~~~~~ 350 (520)
+..++|++|+ . ..-..+. +....+++-.. .|..+. ++..+|+. -.+|.+-+.
T Consensus 155 y~p~h~LLlVgG~~~~~~~~s~------------a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~-- 219 (282)
T PF15492_consen 155 YHPKHRLLLVGGCEQNQDGMSK------------ASSCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSF-- 219 (282)
T ss_pred EcCCCCEEEEeccCCCCCcccc------------ccccCceEEEEcCCCCcEEE-ccccCccccccccccceeeccce--
Confidence 5556666665 2 2100000 01111111111 111111 11111211 122222211
Q ss_pred ccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCC
Q 009993 351 EANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSG 403 (520)
Q Consensus 351 ~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 403 (520)
............|..|..+| ..||+...+|.|.+|++.+.....++...
T Consensus 220 ----~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 220 ----KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ----eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 11111122355777777766 79999999999999999987766655443
No 333
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.87 E-value=0.0054 Score=60.21 Aligned_cols=226 Identities=12% Similarity=0.087 Sum_probs=115.3
Q ss_pred eEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEEC
Q 009993 186 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDR 264 (520)
Q Consensus 186 ~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~ 264 (520)
...+.+|+++.+++ +.||...++..... .... .+.-..+.| ..+.+++-...++|.++.-
T Consensus 36 ~~ls~npngr~v~V-~g~geY~iyt~~~~---------------r~k~---~G~g~~~vw~~~n~yAv~~~~~~I~I~kn 96 (443)
T PF04053_consen 36 QSLSHNPNGRFVLV-CGDGEYEIYTALAW---------------RNKA---FGSGLSFVWSSRNRYAVLESSSTIKIYKN 96 (443)
T ss_dssp SEEEE-TTSSEEEE-EETTEEEEEETTTT---------------EEEE---EEE-SEEEE-TSSEEEEE-TTS-EEEEET
T ss_pred eeEEECCCCCEEEE-EcCCEEEEEEccCC---------------cccc---cCceeEEEEecCccEEEEECCCeEEEEEc
Confidence 34456699999888 55677777763221 1111 233345666 4567777777889999632
Q ss_pred CCCcEEEEeeeccCEEEEeeCCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEE
Q 009993 265 ALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE 344 (520)
Q Consensus 265 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd 344 (520)
-+.+....+..+..+..+-. |.+|...+++.|.+||..+++.+..+. .. +|..+.|+++|.+++..+.+ .+.|++
T Consensus 97 ~~~~~~k~i~~~~~~~~If~-G~LL~~~~~~~i~~yDw~~~~~i~~i~--v~-~vk~V~Ws~~g~~val~t~~-~i~il~ 171 (443)
T PF04053_consen 97 FKNEVVKSIKLPFSVEKIFG-GNLLGVKSSDFICFYDWETGKLIRRID--VS-AVKYVIWSDDGELVALVTKD-SIYILK 171 (443)
T ss_dssp TEE-TT-----SS-EEEEE--SSSEEEEETTEEEEE-TTT--EEEEES--S--E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred CccccceEEcCCcccceEEc-CcEEEEECCCCEEEEEhhHcceeeEEe--cC-CCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence 23333334444434454545 888888888899999999999999985 22 48999999999999988766 577766
Q ss_pred cccC----ccccce-eeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccc
Q 009993 345 IIND----CTEANV-LLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML 419 (520)
Q Consensus 345 ~~~~----~~~~~~-~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (520)
.... ...... .....+..-...|.+..|..+.++-.+.. .|+.+--.. ...+..+.
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkYl~~Ge------------~~~i~~ld------ 232 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKYLVNGE------------TGIIAHLD------ 232 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEEEETTE------------EEEEEE-S------
T ss_pred ecchhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEEEEcCC------------cceEEEcC------
Confidence 5433 000000 01222222245788888877655555554 666632111 00111111
Q ss_pred cCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhH
Q 009993 420 HGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEI 456 (520)
Q Consensus 420 ~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~ 456 (520)
...-+....+..+.+.....|+.|..+.+......
T Consensus 233 --~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~~~ 267 (443)
T PF04053_consen 233 --KPLYLLGYLPKENRLYLIDRDGNVISYELDLSELE 267 (443)
T ss_dssp --S--EEEEEETTTTEEEEE-TT--EEEEE--HHHHH
T ss_pred --CceEEEEEEccCCEEEEEECCCCEEEEEECHHHHH
Confidence 11223344444478999999999999998865443
No 334
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.87 E-value=0.0038 Score=60.43 Aligned_cols=199 Identities=14% Similarity=0.057 Sum_probs=112.5
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEE-------------------------------------------Ee
Q 009993 144 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA-------------------------------------------SS 180 (520)
Q Consensus 144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~-------------------------------------------~~ 180 (520)
.|+.+.|.++..-|+.|...|.|.||.....+... -+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999998889999999999999764321110 01
Q ss_pred CCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-------cC---CE
Q 009993 181 KPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-------DL---TR 249 (520)
Q Consensus 181 ~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-------~~---~~ 249 (520)
.....+|.++. .|=.+++.|..+|.+.|.|++... -++...-.+ ...-......|+++.| |+ -.
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPa-vI~~~~i~~----~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~ 157 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPA-VIYNENIRE----SFLSKSSSSYVTSIEFSVMTLGGDGYSSIC 157 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTE-EEEEEEGGG------T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCe-EEeeccccc----cccccccccCeeEEEEEEEecCCCcccceE
Confidence 12245666666 566789999999999999995543 222111000 0001123456777877 22 35
Q ss_pred EEEEecCCeEEEEECC--C-CcEEEE----e-eeccCEEEEee------------------------CCCEEEEEcCCeE
Q 009993 250 IYSGSWDMTVRVWDRA--L-LKCLKV----L-RHSDWVYGLAP------------------------HDTTVASTSGSDV 297 (520)
Q Consensus 250 l~s~s~dg~v~iwd~~--~-~~~~~~----~-~~~~~v~~~~~------------------------~~~~l~~~~d~~i 297 (520)
+++|...|.+.+|.+. . +..... . .+.+.|..+.+ ...+++++++..+
T Consensus 158 L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~i 237 (395)
T PF08596_consen 158 LLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDI 237 (395)
T ss_dssp EEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEE
T ss_pred EEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccce
Confidence 8899999999999764 1 211111 1 24455554431 1236777889999
Q ss_pred EEEECCCCeeeEEeecccccceEEEEec-----CCCCEEEEEeCCCeEEEEEcccC
Q 009993 298 YIWDTNSGCLLTVVNGAHVGNTKSLARS-----HTGDFLFTGGEDGAIHMYEIIND 348 (520)
Q Consensus 298 ~iwd~~~~~~~~~~~~~~~~~i~~l~~s-----~~~~~l~tg~~dg~i~iwd~~~~ 348 (520)
+++.+.+.+...+... .......+++- ..+..|++-..+|.|++|.+..-
T Consensus 238 rv~~~~~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L 292 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL 292 (395)
T ss_dssp EEE-TT---EEEEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-
T ss_pred EEEeCCCCcccceeec-cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc
Confidence 9999998877665542 22233344442 35667888899999999999877
No 335
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.83 E-value=0.038 Score=54.25 Aligned_cols=208 Identities=15% Similarity=0.076 Sum_probs=103.7
Q ss_pred EEEccCCCEEEEEeCC----------C-eEEEEECCCCcEEEEeCCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCc
Q 009993 148 VFVLASAKLLFTSGYD----------S-IVRMWHLEDGFSIASSKPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVL 215 (520)
Q Consensus 148 l~~~~~~~~l~sgs~d----------g-~v~vwd~~~~~~~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~ 215 (520)
++.+|.|..+|....+ . .|.||+. .|+.+.++.=....+.++. .+...|+.-..||.++++|+....
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce
Confidence 3445555555554333 2 5889985 4666666543336777777 456677888899999999985322
Q ss_pred ceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCc-EEEEee-----------e--ccCEEE
Q 009993 216 PHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLK-CLKVLR-----------H--SDWVYG 281 (520)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~-----------~--~~~v~~ 281 (520)
.+.+.. ......-....+....+.++-++.-..++.+.+.+--... ..+.+. . ...+..
T Consensus 113 --~fsl~~-----~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~ 185 (410)
T PF04841_consen 113 --QFSLGE-----EIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPL 185 (410)
T ss_pred --eechhh-----hccccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceE
Confidence 111111 0111111122222223321223333334444443221111 111110 0 001111
Q ss_pred EeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeee
Q 009993 282 LAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW 360 (520)
Q Consensus 282 ~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~ 360 (520)
+..+....+... ++.+.+.+...... + ...+++..|++||+++++|.-..+|.+.+.+..-. .....+
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~~---i--~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~------~~~~e~ 254 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFKQ---I--DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS------EKLCEF 254 (410)
T ss_pred eecCcceEEEEecCCEEEEEEcccccc---c--cCCCCeEEEEECCCCCEEEEEECCCCEEEEECccc------ceeEEe
Confidence 223333333333 55555444332211 2 13468999999999999999999999988876544 223333
Q ss_pred cCC-cCCEEEEEecC
Q 009993 361 IPH-TGPVNSLAFEF 374 (520)
Q Consensus 361 ~~h-~~~v~~l~~~~ 374 (520)
... ......+.|-+
T Consensus 255 ~~~~~~~p~~~~WCG 269 (410)
T PF04841_consen 255 DTDSKSPPKQMAWCG 269 (410)
T ss_pred ecCcCCCCcEEEEEC
Confidence 222 33556666644
No 336
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.81 E-value=0.0002 Score=69.49 Aligned_cols=75 Identities=16% Similarity=0.215 Sum_probs=61.9
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccC
Q 009993 140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEV 214 (520)
Q Consensus 140 ~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~ 214 (520)
.....|.|++++|+.+.|+.|..||+|.+||...+.....-..-.....++.|+|..+++|+..|.+.+||+.-+
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 356789999999999999999999999999988775444333334456677899999999999999999998654
No 337
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.80 E-value=0.0028 Score=48.11 Aligned_cols=96 Identities=23% Similarity=0.276 Sum_probs=68.1
Q ss_pred eEEEEE---cC---CEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe-eCCCEEEEEc-CCeEEEEECCCCeeeEEe
Q 009993 240 ITSLAL---DL---TRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVV 311 (520)
Q Consensus 240 v~~l~~---~~---~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~-d~~i~iwd~~~~~~~~~~ 311 (520)
|++|++ ++ +.|++||.|..|++|+- .+.+..+...+.|.++. ..+..++.+. +|+|-+|+- ...+..+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRi 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRI 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeee
Confidence 566666 33 67999999999999984 47788888888899988 4445566666 999999976 3344455
Q ss_pred ecccccceEEEEecC-CC---CEEEEEeCCCeEE
Q 009993 312 NGAHVGNTKSLARSH-TG---DFLFTGGEDGAIH 341 (520)
Q Consensus 312 ~~~~~~~i~~l~~s~-~~---~~l~tg~~dg~i~ 341 (520)
+. ...++++++.. ++ .-|++|-.+|.|-
T Consensus 78 KS--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 78 KS--KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cc--CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 42 33466666543 32 2689999999874
No 338
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.73 E-value=0.029 Score=56.43 Aligned_cols=179 Identities=13% Similarity=-0.081 Sum_probs=109.6
Q ss_pred EccCCCEEEE-EeCCCeEEEEECCCCcEEEEeCC-CCceEEEEecCCCEEEEEeCCC----cEEEEEcccCcceeeeccC
Q 009993 150 VLASAKLLFT-SGYDSIVRMWHLEDGFSIASSKP-LGCTIRAVAADKKLLVAGGTDG----FIHCWRAVEVLPHLFDISG 223 (520)
Q Consensus 150 ~~~~~~~l~s-gs~dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sg~~dg----~i~vwd~~~~~~~~~~~~~ 223 (520)
+.|||+.+.. .-..+.+.+.|.++.+...++.. -......+++++.++++.+.+. ++..-+..+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~--------- 270 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER--------- 270 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccC---------
Confidence 3456665533 23356778888887776665542 2333456778888888876432 2222221110
Q ss_pred CccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCC-----CcEEEEeeeccCEEE--EeeCCCEEEEEc--C
Q 009993 224 SEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRAL-----LKCLKVLRHSDWVYG--LAPHDTTVASTS--G 294 (520)
Q Consensus 224 ~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~-----~~~~~~~~~~~~v~~--~~~~~~~l~~~~--d 294 (520)
.....+ .-..+..+.-+|++... .++.|.+.|..+ .+.+..+.-...... ++|+|+++++++ +
T Consensus 271 ----d~~vvf--ni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS 342 (635)
T PRK02888 271 ----DWVVVF--NIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLS 342 (635)
T ss_pred ----ceEEEE--chHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCC
Confidence 000000 00001111115666555 357899999998 466666664444444 559999999988 7
Q ss_pred CeEEEEECCCCee------------eEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEccc
Q 009993 295 SDVYIWDTNSGCL------------LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIN 347 (520)
Q Consensus 295 ~~i~iwd~~~~~~------------~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~ 347 (520)
.+|.|+|+.+.+. +.... -.......+|.++|....+-.-|..|..||+..
T Consensus 343 ~tVSVIDv~k~k~~~~~~~~~~~~vvaeve--vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 343 PTVTVIDVRKLDDLFDGKIKPRDAVVAEPE--LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CcEEEEEChhhhhhhhccCCccceEEEeec--cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 9999999988553 33332 123345678999999888889999999999976
No 339
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.71 E-value=0.033 Score=51.66 Aligned_cols=219 Identities=14% Similarity=0.139 Sum_probs=123.0
Q ss_pred ecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCc
Q 009993 191 AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLK 268 (520)
Q Consensus 191 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~ 268 (520)
...++.|+.|+.+| +.+++..... ..... .+...|..+.. +-+.+++-+ |+.+.++++....
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~------------~~~~i--~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~ 67 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPS------------KPTRI--LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLE 67 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCc------------cceeE--eecceEEEEEEecccCEEEEEc-CCccEEEEchhhc
Confidence 35678899999998 8888872221 11111 12333888888 335565555 4999999987554
Q ss_pred EEE---------------EeeeccCEEEEe-----eCCCEEEEEcCCeEEEEECCCC-----eeeEEeecccccceEEEE
Q 009993 269 CLK---------------VLRHSDWVYGLA-----PHDTTVASTSGSDVYIWDTNSG-----CLLTVVNGAHVGNTKSLA 323 (520)
Q Consensus 269 ~~~---------------~~~~~~~v~~~~-----~~~~~l~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~i~~l~ 323 (520)
... .+.....+..++ .....++++....|.+|..... ...+.+. -...+..++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~--lp~~~~~i~ 145 (275)
T PF00780_consen 68 PVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS--LPDPPSSIA 145 (275)
T ss_pred cccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE--cCCCcEEEE
Confidence 333 222233344433 3344566666789888877653 3455554 457888999
Q ss_pred ecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec----------CCcCCEEEEEecC-CEEEEEeCCCcEEEEeCC
Q 009993 324 RSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI----------PHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVR 392 (520)
Q Consensus 324 ~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~----------~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~ 392 (520)
|. ++.++.|..++ ..+.|+.++.. ..+.... ....++..+..+. .+|++- |..-.+-|..
T Consensus 146 ~~--~~~i~v~~~~~-f~~idl~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~~ 216 (275)
T PF00780_consen 146 FL--GNKICVGTSKG-FYLIDLNTGSP----SELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNKN 216 (275)
T ss_pred Ee--CCEEEEEeCCc-eEEEecCCCCc----eEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcCC
Confidence 97 66777776555 77889886632 1111111 1123455555543 444432 2233333332
Q ss_pred cccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhH
Q 009993 393 KLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEI 456 (520)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~ 456 (520)
.. .. . ...+.-. ....++.....+|+..+.++ |.||++.++..+
T Consensus 217 G~-~~----------------r-~~~i~W~-~~p~~~~~~~pyli~~~~~~-iEV~~~~~~~lv 260 (275)
T PF00780_consen 217 GE-PS----------------R-KSTIQWS-SAPQSVAYSSPYLIAFSSNS-IEVRSLETGELV 260 (275)
T ss_pred CC-cC----------------c-ccEEEcC-CchhEEEEECCEEEEECCCE-EEEEECcCCcEE
Confidence 21 00 0 0011111 13345555566777777655 999999998543
No 340
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.71 E-value=2.1e-05 Score=76.36 Aligned_cols=242 Identities=15% Similarity=0.157 Sum_probs=140.4
Q ss_pred cccEEEEEEccC--CCEEEEEeCCCeEEEEECCCCcE--EEEeCCCCceEEEEe---cCCCEEEEEe----CCCcEEEEE
Q 009993 142 TEAVLTVFVLAS--AKLLFTSGYDSIVRMWHLEDGFS--IASSKPLGCTIRAVA---ADKKLLVAGG----TDGFIHCWR 210 (520)
Q Consensus 142 ~~~V~~l~~~~~--~~~l~sgs~dg~v~vwd~~~~~~--~~~~~~~~~~v~~~~---~~~~~l~sg~----~dg~i~vwd 210 (520)
+..+.|++...+ ..+++.|..+|.|.+-.+....- ....+++...+.+++ .|.+.||+|- .|..+.+||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 456678877653 35788999999999988754322 223455666666665 4556777774 356799999
Q ss_pred cccCcceeeeccCCccccceEEec-cCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCc-EEEEeeeccCEE--EEee
Q 009993 211 AVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLK-CLKVLRHSDWVY--GLAP 284 (520)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~~~~v~--~~~~ 284 (520)
+.++... ......+. +......+++| +.+.+++|.....++++|++..- ....+ ....+. .+.|
T Consensus 136 i~s~ltv---------Pke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv-nTk~vqG~tVdp 205 (783)
T KOG1008|consen 136 INSLLTV---------PKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV-NTKYVQGITVDP 205 (783)
T ss_pred cccccCC---------CccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh-hhhhcccceecC
Confidence 9876211 01111111 23345557888 66788999998999999987321 11111 122233 3444
Q ss_pred -CCCEEEEEcCCeEEEEE-CCCCe-eeEEee---cccccceEEEEecCCC-CEEEEEeC-CCeEEEEEcccCccccc---
Q 009993 285 -HDTTVASTSGSDVYIWD-TNSGC-LLTVVN---GAHVGNTKSLARSHTG-DFLFTGGE-DGAIHMYEIINDCTEAN--- 353 (520)
Q Consensus 285 -~~~~l~~~~d~~i~iwd-~~~~~-~~~~~~---~~~~~~i~~l~~s~~~-~~l~tg~~-dg~i~iwd~~~~~~~~~--- 353 (520)
.++++++..||.|.+|| .++-+ ++..+. ......+..++|.|.. ..+++... .++|+.||+........
T Consensus 206 ~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn 285 (783)
T KOG1008|consen 206 FSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANN 285 (783)
T ss_pred CCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccc
Confidence 78888888899999999 43322 222221 1122358899999953 34455444 57899999864322110
Q ss_pred --eeeeee---ecCC--cCCEEEEEecC----CEEEEEeCCCcEEEEeCCc
Q 009993 354 --VLLVAT---WIPH--TGPVNSLAFEF----PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 354 --~~~~~~---~~~h--~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~ 393 (520)
...... +... ...|.+..|++ ...+.+...-++.-+++..
T Consensus 286 ~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e 336 (783)
T KOG1008|consen 286 SVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHE 336 (783)
T ss_pred cceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccchh
Confidence 000111 1111 24566666654 3455555555566555543
No 341
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.66 E-value=3.9e-05 Score=77.14 Aligned_cols=191 Identities=13% Similarity=0.083 Sum_probs=118.8
Q ss_pred EEEEeCCCCceEEE--EecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEE
Q 009993 176 SIASSKPLGCTIRA--VAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIY 251 (520)
Q Consensus 176 ~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~ 251 (520)
..+++..|....+| ++.+.+.|+.|+..|.|+++++.+|. .......|..+|+-+.. +|..++
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-------------~e~s~ncH~SavT~vePs~dgs~~L 1159 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-------------MEESVNCHQSAVTLVEPSVDGSTQL 1159 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc-------------ccccccccccccccccccCCcceee
Confidence 34456666655554 45778899999999999999998874 34456689999999988 777766
Q ss_pred EEecCC--eEEEEECCC-CcEEEEeeeccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecc---cccceEEEEe
Q 009993 252 SGSWDM--TVRVWDRAL-LKCLKVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGA---HVGNTKSLAR 324 (520)
Q Consensus 252 s~s~dg--~v~iwd~~~-~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~---~~~~i~~l~~ 324 (520)
+.+.-. -..+|++.+ +...+++.....| .++..-..-+.|. .....+||+.++..+.++..+ ....-++..|
T Consensus 1160 tsss~S~PlsaLW~~~s~~~~~Hsf~ed~~v-kFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1160 TSSSSSSPLSALWDASSTGGPRHSFDEDKAV-KFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHF 1238 (1516)
T ss_pred eeccccCchHHHhccccccCcccccccccee-ehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccccc
Confidence 554332 467899763 3344444322211 1222222223344 677899999999877764322 1223367889
Q ss_pred cCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCccccc
Q 009993 325 SHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRS 397 (520)
Q Consensus 325 s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~ 397 (520)
+|+..+++ .|| .+||++.. ..+..+...+..+ .-.|+| ..++.-+ .|||+++....
T Consensus 1239 sP~D~LIl---ndG--vLWDvR~~------~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1239 SPCDTLIL---NDG--VLWDVRIP------EAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred CCCcceEe---eCc--eeeeeccH------HHHhhhhhheecc-cccccCCCceEEeec-----hhhhhHHHHHH
Confidence 99988876 566 46999988 3444443322111 123555 3444433 48999986443
No 342
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.66 E-value=0.0067 Score=60.77 Aligned_cols=266 Identities=15% Similarity=0.124 Sum_probs=136.5
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEEeCCCCc---eEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEE
Q 009993 156 LLFTSGYDSIVRMWHLEDGFSIASSKPLGC---TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR 232 (520)
Q Consensus 156 ~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 232 (520)
.+.||+..|.|+|+-+.+++.+..+...+. .=+.+....+.++..+..|....|. +.
T Consensus 68 ~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~g--D~------------------ 127 (635)
T PRK02888 68 GFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNG--DT------------------ 127 (635)
T ss_pred EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCC--Cc------------------
Confidence 367899999999999999988877642211 1111121222222222212222221 00
Q ss_pred eccCC-CCeEEEEEcCCEEEEEec-CCeEEEEECCCCcEEEEee-------e---------ccCEEEE-------eeCCC
Q 009993 233 LWEHE-GPITSLALDLTRIYSGSW-DMTVRVWDRALLKCLKVLR-------H---------SDWVYGL-------APHDT 287 (520)
Q Consensus 233 ~~~h~-~~v~~l~~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~-------~---------~~~v~~~-------~~~~~ 287 (520)
.|. -.-+.=.+||++++.-.. +..|-..+++..++-+.+. | ...|.+- .++|+
T Consensus 128 --HHp~~s~t~g~ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk 205 (635)
T PRK02888 128 --HHPHMSFTDGTYDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGK 205 (635)
T ss_pred --CCCcccccCCccceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCC
Confidence 011 111222346777777664 4556566665555443332 2 1223321 14666
Q ss_pred EEEEEc--CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC-----------------------------
Q 009993 288 TVASTS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE----------------------------- 336 (520)
Q Consensus 288 ~l~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~----------------------------- 336 (520)
.+...+ .+.+.+.|..+.+....+.- .+....+.++|+|+++++.+.
T Consensus 206 ~l~~~~ey~~~vSvID~etmeV~~qV~V--dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea 283 (635)
T PRK02888 206 DLDDPKKYRSLFTAVDAETMEVAWQVMV--DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEE 283 (635)
T ss_pred EeecccceeEEEEEEECccceEEEEEEe--CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHH
Confidence 654444 46788888888777666652 334556778888888777651
Q ss_pred -----------CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEE-EeCCCcEEEEeCCcccccCCCCC
Q 009993 337 -----------DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVS-AAGDGKLSLIDVRKLLRSGRPTS 402 (520)
Q Consensus 337 -----------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s-~s~dg~i~vwd~~~~~~~~~~~~ 402 (520)
++.|.+.|.++.... . ..+.....-......+.++| +++++ +..+.+|.|.|+.+......-..
T Consensus 284 ~vkdGK~~~V~gn~V~VID~~t~~~~-~-~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 284 AVKAGKFKTIGGSKVPVVDGRKAANA-G-SALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hhhCCCEEEECCCEEEEEECCccccC-C-cceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 123444444430000 0 01111112223446677766 45554 45689999999998644321111
Q ss_pred CCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCch
Q 009993 403 GKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQA 453 (520)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~ 453 (520)
..+.....++ .-|..---++++.++....|---|..|..|++...
T Consensus 362 ~~~~~vvaev------evGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a 406 (635)
T PRK02888 362 KPRDAVVAEP------ELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAA 406 (635)
T ss_pred CccceEEEee------ccCCCcceEEECCCCCEEEeEeecceeEEEehHHH
Confidence 0000000000 01222223455555667888888999999999874
No 343
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.65 E-value=0.0037 Score=64.91 Aligned_cols=135 Identities=18% Similarity=0.163 Sum_probs=97.7
Q ss_pred EeCCCeEEEEECCCCcEEEEeCCCCce-EEEEecC-------CCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceE
Q 009993 160 SGYDSIVRMWHLEDGFSIASSKPLGCT-IRAVAAD-------KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQF 231 (520)
Q Consensus 160 gs~dg~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~-------~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 231 (520)
......|+-.|++.|+.+..+..+... |..+.|+ +...+.|-.+..+..||.+-....+.. ...
T Consensus 500 ~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~--------~~~ 571 (794)
T PF08553_consen 500 PNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD--------SQS 571 (794)
T ss_pred CCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceee--------ccc
Confidence 345677889999999999999877644 8888764 345678888899999998643211110 011
Q ss_pred EeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEcCCeEEEEEC
Q 009993 232 RLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTSGSDVYIWDT 302 (520)
Q Consensus 232 ~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~d~~i~iwd~ 302 (520)
..........|++- ...+|++|+.+|.||+||--..+....+. ...+|..+. .+|+++++.++..+.+++.
T Consensus 572 k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred cccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 11234566778887 56899999999999999954333223333 578999887 8999999999999999886
No 344
>PHA02713 hypothetical protein; Provisional
Probab=97.59 E-value=0.006 Score=62.51 Aligned_cols=212 Identities=9% Similarity=0.024 Sum_probs=112.4
Q ss_pred eEEEEECCCCcEE--EEeCCCCceEEEEecCCCEEEEEeCC------CcEEEEEcccCcceeeeccCCccccceEEeccC
Q 009993 165 IVRMWHLEDGFSI--ASSKPLGCTIRAVAADKKLLVAGGTD------GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH 236 (520)
Q Consensus 165 ~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~l~sg~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h 236 (520)
.+..||..+++-. ..++...........++...+.|+.+ ..+..||..+..- .....+...
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W-----------~~~~~m~~~ 341 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIH-----------VELPPMIKN 341 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeE-----------eeCCCCcch
Confidence 4677888766432 22221111111223577777888754 2366677655421 111111111
Q ss_pred CCCeEEEEEcCCEEEEEecCC-----eEEEEECCCCcEEEE--eeecc-CEEEEeeCCCEEEEEc-C-------------
Q 009993 237 EGPITSLALDLTRIYSGSWDM-----TVRVWDRALLKCLKV--LRHSD-WVYGLAPHDTTVASTS-G------------- 294 (520)
Q Consensus 237 ~~~v~~l~~~~~~l~s~s~dg-----~v~iwd~~~~~~~~~--~~~~~-~v~~~~~~~~~l~~~~-d------------- 294 (520)
.........++...+.|+.++ ++..||..+.+-... +.... ....+..++.+.+.|+ +
T Consensus 342 R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~ 421 (557)
T PHA02713 342 RCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNS 421 (557)
T ss_pred hhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccc
Confidence 222233444777778887754 488899876543221 11111 1122336777777766 4
Q ss_pred ----------CeEEEEECCCCeee--EEeecccccceEEEEecCCCCEEEEEeCCC------eEEEEEccc-Ccccccee
Q 009993 295 ----------SDVYIWDTNSGCLL--TVVNGAHVGNTKSLARSHTGDFLFTGGEDG------AIHMYEIIN-DCTEANVL 355 (520)
Q Consensus 295 ----------~~i~iwd~~~~~~~--~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg------~i~iwd~~~-~~~~~~~~ 355 (520)
..+..||+.+.+-. ..+..+.. .. +++ .-++++.+.|+.++ .+..||..+ .. +.
T Consensus 422 ~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~-~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~----W~ 494 (557)
T PHA02713 422 IDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI-RP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG----WE 494 (557)
T ss_pred ccccccccccceEEEECCCCCeEeecCCCCcccc-cC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCC----ee
Confidence 24778888776422 22211111 11 122 22567777777542 467888876 32 23
Q ss_pred eeeeecCCcCCEEEEEecCCEEEEEeCCC--cEEEEeCCcc
Q 009993 356 LVATWIPHTGPVNSLAFEFPWLVSAAGDG--KLSLIDVRKL 394 (520)
Q Consensus 356 ~~~~~~~h~~~v~~l~~~~~~l~s~s~dg--~i~vwd~~~~ 394 (520)
.+..+.........+.+++...++|+.|| .+..||+.+.
T Consensus 495 ~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 495 LITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred EccccCcccccceeEEECCEEEEEeeecceeehhhcCcccc
Confidence 34444444445566667888899999888 7777887763
No 345
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.59 E-value=0.02 Score=60.57 Aligned_cols=191 Identities=16% Similarity=0.111 Sum_probs=117.5
Q ss_pred ceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEE
Q 009993 185 CTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVR 260 (520)
Q Consensus 185 ~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~ 260 (520)
..|.++. .+.+.++.+..+|.|.+-|..+.. ......-...|.+++| |...++..+.++++.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--------------~eivg~vd~GI~aaswS~Dee~l~liT~~~tll 134 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLE--------------LEIVGNVDNGISAASWSPDEELLALITGRQTLL 134 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccc--------------eeeeeeccCceEEEeecCCCcEEEEEeCCcEEE
Confidence 4666666 678888889999999998876642 2223345678999999 667888888877776
Q ss_pred EEEC----CCCcEE-------------------EEee-------------e---------ccCEEEEe--eCCCEEEEE-
Q 009993 261 VWDR----ALLKCL-------------------KVLR-------------H---------SDWVYGLA--PHDTTVAST- 292 (520)
Q Consensus 261 iwd~----~~~~~~-------------------~~~~-------------~---------~~~v~~~~--~~~~~l~~~- 292 (520)
+-+- -..+.+ ..++ + .+.=++++ .+|.++++.
T Consensus 135 ~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~ 214 (1265)
T KOG1920|consen 135 FMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSF 214 (1265)
T ss_pred EEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEE
Confidence 6432 110100 0111 0 00111233 678888883
Q ss_pred ----cC-CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEE---eCCCeEEEEEcccCccccceeeeeeecCCc
Q 009993 293 ----SG-SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTG---GEDGAIHMYEIINDCTEANVLLVATWIPHT 364 (520)
Q Consensus 293 ----~d-~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg---~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 364 (520)
.+ ..|++||.+ |..-..-. ...+.-.+++|-|.|..+++- ..|+.|.+|.-+.-... .....+....
T Consensus 215 ~~~~~~~RkirV~drE-g~Lns~se-~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg---~f~l~~p~de 289 (1265)
T KOG1920|consen 215 VESETGTRKIRVYDRE-GALNSTSE-PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG---EFVLPFPLDE 289 (1265)
T ss_pred EeccCCceeEEEeccc-chhhcccC-cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc---ccccCCcccc
Confidence 34 689999987 43322221 234445689999999998874 34567999985543211 1222233334
Q ss_pred CCEEEEEecC--CEEEE---EeCCCcEEEEeCCcc
Q 009993 365 GPVNSLAFEF--PWLVS---AAGDGKLSLIDVRKL 394 (520)
Q Consensus 365 ~~v~~l~~~~--~~l~s---~s~dg~i~vwd~~~~ 394 (520)
..|..++|+. ..|++ ......|++|-+.+.
T Consensus 290 ~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 290 KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred cchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 4589999964 56665 444555999998764
No 346
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.57 E-value=0.028 Score=54.55 Aligned_cols=150 Identities=20% Similarity=0.250 Sum_probs=69.2
Q ss_pred ceEEEEecC-----CC---CEEEEEeCCCeEEEEEccc-CccccceeeeeeecCCcCCEEEEEe-cC-------------
Q 009993 318 NTKSLARSH-----TG---DFLFTGGEDGAIHMYEIIN-DCTEANVLLVATWIPHTGPVNSLAF-EF------------- 374 (520)
Q Consensus 318 ~i~~l~~s~-----~~---~~l~tg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~h~~~v~~l~~-~~------------- 374 (520)
.++++.|+. |+ -.+++|...|.+.+|.+-- ...............+.++|..+.. +.
T Consensus 137 ~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~ 216 (395)
T PF08596_consen 137 YVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAM 216 (395)
T ss_dssp -EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHH
T ss_pred CeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHh
Confidence 455666542 22 3688888999999998752 2222222333333345566665552 10
Q ss_pred ---------CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccC-cceeeEEEE-----ecCCEEEEe
Q 009993 375 ---------PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG-FECNLLSVD-----IGADRIVCG 439 (520)
Q Consensus 375 ---------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~-----~~~~~l~sg 439 (520)
+.++....+..++++...+.....+ .+.. ......++. ..+..|++-
T Consensus 217 ~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K------------------~~~~~~~~~~~~vv~~~~~~~~~~Lv~l 278 (395)
T PF08596_consen 217 QGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHK------------------SFDDPFLCSSASVVPTISRNGGYCLVCL 278 (395)
T ss_dssp HGGGGT----EEEEEE-SSEEEEE-TT---EEEE------------------E-SS-EEEEEEEEEEEE-EEEEEEEEEE
T ss_pred hccccCCCcCcEEEEEcccceEEEeCCCCcccce------------------eeccccccceEEEEeecccCCceEEEEE
Confidence 2344445567899998876422111 1111 112222221 234488888
Q ss_pred cCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCccccc
Q 009993 440 GEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQC 491 (520)
Q Consensus 440 ~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 491 (520)
..+|.|+++.+..-+++...... .....+......++++|..+.-+
T Consensus 279 ~~~G~i~i~SLP~Lkei~~~~l~------~~~d~~~~~~ssis~~Gdi~~~~ 324 (395)
T PF08596_consen 279 FNNGSIRIYSLPSLKEIKSVSLP------PPLDSRRLSSSSISRNGDIFYWT 324 (395)
T ss_dssp ETTSEEEEEETTT--EEEEEE-S------S---HHHHTT-EE-TTS-EEEE-
T ss_pred ECCCcEEEEECCCchHhhcccCC------CccccccccccEECCCCCEEEEe
Confidence 99999999999875544332111 11112234567778888866544
No 347
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.57 E-value=0.0011 Score=65.62 Aligned_cols=160 Identities=13% Similarity=0.155 Sum_probs=103.4
Q ss_pred EEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeee
Q 009993 279 VYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV 357 (520)
Q Consensus 279 v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~ 357 (520)
.+|++..+.+++.|+ -|.+++|+...+.....-..+..+.+...+.+++..++|.|+..|.|.++-+....+.......
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t 117 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT 117 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence 356667777777777 6788888877766554443345566777788999999999999999999998875433222111
Q ss_pred eeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCE
Q 009993 358 ATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADR 435 (520)
Q Consensus 358 ~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 435 (520)
..-..|...|+++.|++ ..+++|...|+|..-.+..- ... ......+-.....|.-++.-..+
T Consensus 118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~-~~~--------------~~~~q~il~~ds~IVQlD~~q~~ 182 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSR-QAF--------------LSKSQEILSEDSEIVQLDYLQSY 182 (726)
T ss_pred cccccCCceEEEEEecccccEEeecCCCceEEEEEechh-hhh--------------ccccceeeccCcceEEeecccce
Confidence 12234788999999976 68999999999999888761 110 11111222334556667665554
Q ss_pred EEEecCCCeEEEEeCCchH
Q 009993 436 IVCGGEEGIVRIWNFSQAF 454 (520)
Q Consensus 436 l~sg~~Dg~v~iwd~~~~~ 454 (520)
|..++.- .-.+++.+.+.
T Consensus 183 LLVStl~-r~~Lc~tE~et 200 (726)
T KOG3621|consen 183 LLVSTLT-RCILCQTEAET 200 (726)
T ss_pred ehHhhhh-hhheeecchhH
Confidence 4444433 33456655443
No 348
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=97.56 E-value=4.6e-05 Score=67.89 Aligned_cols=50 Identities=26% Similarity=0.413 Sum_probs=46.1
Q ss_pred ccCCCHHHHHHHccC-----CChhhhHHHhhhhhhHHHhhcCcchhhhhhhhhcC
Q 009993 64 ITDLPPALISEILNC-----LDPKELGIVSCVSPILHRLASDHHAWKEFYCERWG 113 (520)
Q Consensus 64 ~~~LP~el~~~i~~~-----L~~~~l~~~s~v~~~~~~~~~~~~lW~~~~~~~~~ 113 (520)
|..||+|+++.||.. ||..+|.++|+|||.|+..+.++.+|+..|...|+
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~ 161 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQ 161 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHH
Confidence 688999999999976 78899999999999999999999999987777886
No 349
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.55 E-value=0.04 Score=54.27 Aligned_cols=217 Identities=11% Similarity=0.035 Sum_probs=111.8
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEE-cccCcceee
Q 009993 141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWR-AVEVLPHLF 219 (520)
Q Consensus 141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd-~~~~~~~~~ 219 (520)
..-....+.++|+|++++.+ .||.-.|+..........-.+ . -..+.. .+.+|+-..+++|.++. .....
T Consensus 31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~G~g--~-~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~---- 101 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAFGSG--L-SFVWSS-RNRYAVLESSSTIKIYKNFKNEV---- 101 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEEEE---S-EEEE-T-SSEEEEE-TTS-EEEEETTEE-T----
T ss_pred CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccccCce--e-EEEEec-CccEEEEECCCeEEEEEcCcccc----
Confidence 33446789999999988885 578888888544443332221 1 123445 45567777788898863 22110
Q ss_pred eccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEcCCeE
Q 009993 220 DISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTSGSDV 297 (520)
Q Consensus 220 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~d~~i 297 (520)
.....+ ...+..|-. |..|...+. +.|.+||+.+++.+..+.... |..+. +++.+++..++..+
T Consensus 102 --------~k~i~~---~~~~~~If~-G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i 167 (443)
T PF04053_consen 102 --------VKSIKL---PFSVEKIFG-GNLLGVKSS-DFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDSI 167 (443)
T ss_dssp --------T--------SS-EEEEE--SSSEEEEET-TEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-SE
T ss_pred --------ceEEcC---CcccceEEc-CcEEEEECC-CCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCeE
Confidence 001111 112333332 666666554 489999999999999998654 55555 77889999998888
Q ss_pred EEEECCCC-----------eeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCC
Q 009993 298 YIWDTNSG-----------CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP 366 (520)
Q Consensus 298 ~iwd~~~~-----------~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 366 (520)
.+++.+.. .....+. .-...|.+.+|..+ .++-.+.. .++. +..+.. ..+..+ ..+
T Consensus 168 ~il~~~~~~~~~~~~~g~e~~f~~~~-E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~----~~i~~l---d~~ 234 (443)
T PF04053_consen 168 YILKYNLEAVAAIPEEGVEDAFELIH-EISERIKSGCWVED--CFIYTTSN-HLKY--LVNGET----GIIAHL---DKP 234 (443)
T ss_dssp EEEEE-HHHHHHBTTTB-GGGEEEEE-EE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEE----EEEEE----SS-
T ss_pred EEEEecchhcccccccCchhceEEEE-EecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCc----ceEEEc---CCc
Confidence 88876543 0122221 12456778888655 44433333 6665 444421 223333 346
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993 367 VNSLAFEF--PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 367 v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 393 (520)
+.=+.+.+ +.+.....|+.|..+.+..
T Consensus 235 ~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 235 LYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp -EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred eEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 66677766 8888888999998888764
No 350
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=5.5e-05 Score=67.14 Aligned_cols=44 Identities=39% Similarity=0.559 Sum_probs=41.5
Q ss_pred ccCCCHHHHHHHccCCChhhhHHHhhhhhhHHHhhcCcchhhhh
Q 009993 64 ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEF 107 (520)
Q Consensus 64 ~~~LP~el~~~i~~~L~~~~l~~~s~v~~~~~~~~~~~~lW~~~ 107 (520)
...||+||+..||+.|..++|.+++.||++|+++++|+.+|..+
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~l 141 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTL 141 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeee
Confidence 56799999999999999999999999999999999999999753
No 351
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.54 E-value=0.017 Score=55.05 Aligned_cols=173 Identities=13% Similarity=0.207 Sum_probs=107.7
Q ss_pred CeEEEEECCCCcEEEEee--eccCEEEEe----e-----CCCEEEEEcC-----------CeEEEEECCCC-----eeeE
Q 009993 257 MTVRVWDRALLKCLKVLR--HSDWVYGLA----P-----HDTTVASTSG-----------SDVYIWDTNSG-----CLLT 309 (520)
Q Consensus 257 g~v~iwd~~~~~~~~~~~--~~~~v~~~~----~-----~~~~l~~~~d-----------~~i~iwd~~~~-----~~~~ 309 (520)
..|++.|..+.+.+..+. ....+.++. . ...++++|.. |.|.++++... +...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 468899998888887776 344455544 2 1466666541 77999999884 2222
Q ss_pred EeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEE
Q 009993 310 VVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLI 389 (520)
Q Consensus 310 ~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vw 389 (520)
.......++|++++-- ++ .|+++ .++.|.+|++.... .......+.. ...++++...+++++.|.....+.++
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~---~l~~~~~~~~-~~~i~sl~~~~~~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSK---TLLKKAFYDS-PFYITSLSVFKNYILVGDAMKSVSLL 154 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTS---SEEEEEEE-B-SSSEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcc---cchhhheecc-eEEEEEEeccccEEEEEEcccCEEEE
Confidence 2223467889998865 34 44444 35889999998884 1223333323 33788888888999999998899988
Q ss_pred eCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEe--cCCEEEEecCCCeEEEEeCCc
Q 009993 390 DVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--GADRIVCGGEEGIVRIWNFSQ 452 (520)
Q Consensus 390 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~~Dg~v~iwd~~~ 452 (520)
..+.... . +.. ..+ ......++++.+ +++.++.+..+|.|.++....
T Consensus 155 ~~~~~~~--------~---l~~---va~--d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 155 RYDEENN--------K---LIL---VAR--DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEETTTE------------EEE---EEE--ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEccCC--------E---EEE---EEe--cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 6553100 0 000 001 111233445444 456999999999999999863
No 352
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.53 E-value=3.5e-05 Score=74.84 Aligned_cols=189 Identities=14% Similarity=0.193 Sum_probs=117.5
Q ss_pred CCCeEEEEE----cCCEEEEEecCCeEEEEECCCCcEE-EE--eeeccCEEEEe---eCCCEEEEEcC-----CeEEEEE
Q 009993 237 EGPITSLAL----DLTRIYSGSWDMTVRVWDRALLKCL-KV--LRHSDWVYGLA---PHDTTVASTSG-----SDVYIWD 301 (520)
Q Consensus 237 ~~~v~~l~~----~~~~l~s~s~dg~v~iwd~~~~~~~-~~--~~~~~~v~~~~---~~~~~l~~~~d-----~~i~iwd 301 (520)
...+.|+++ +...++.|..+|.|-+-.++...-. .. -++....++++ -|.+.|++|-| ..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 445666666 2245888999999999887654332 22 22666777776 45567777753 5699999
Q ss_pred CCCC--eee--EEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEec---C
Q 009993 302 TNSG--CLL--TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE---F 374 (520)
Q Consensus 302 ~~~~--~~~--~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~ 374 (520)
+.++ .+. ..+..+......+++|..+.+++.+|.....++++|++... .....-.+..+..+..+ +
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-------~~~~svnTk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-------DSVSSVNTKYVQGITVDPFSP 208 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-------hhhhhhhhhhcccceecCCCC
Confidence 9887 221 12222234456688998888999999999999999998542 11111122344455554 5
Q ss_pred CEEEEEeCCCcEEEEe-CCcccccCCCCCCCceeeeeecCCCcccccCc----ceeeEEEEecCC---EEEEec-CCCeE
Q 009993 375 PWLVSAAGDGKLSLID-VRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGF----ECNLLSVDIGAD---RIVCGG-EEGIV 445 (520)
Q Consensus 375 ~~l~s~s~dg~i~vwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~---~l~sg~-~Dg~v 445 (520)
+++++-. ||.|.+|| .++. +.+...+... ...++.+++.+. .+++.. ..++|
T Consensus 209 nY~cs~~-dg~iAiwD~~rni------------------enpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tI 269 (783)
T KOG1008|consen 209 NYFCSNS-DGDIAIWDTYRNI------------------ENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITI 269 (783)
T ss_pred Cceeccc-cCceeeccchhhh------------------ccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceE
Confidence 7877766 99999999 3332 1111111111 123566666654 555555 45789
Q ss_pred EEEeCC
Q 009993 446 RIWNFS 451 (520)
Q Consensus 446 ~iwd~~ 451 (520)
+++++.
T Consensus 270 rlydi~ 275 (783)
T KOG1008|consen 270 RLYDIC 275 (783)
T ss_pred EEeccc
Confidence 999985
No 353
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.52 E-value=0.0073 Score=61.76 Aligned_cols=189 Identities=16% Similarity=0.168 Sum_probs=104.3
Q ss_pred EEEE-cCCEEEEEecC------CeEEEEECCCCcEEEEee--eccCEEEEe-eCCCEEEEEc-CC-----eEEEEECCCC
Q 009993 242 SLAL-DLTRIYSGSWD------MTVRVWDRALLKCLKVLR--HSDWVYGLA-PHDTTVASTS-GS-----DVYIWDTNSG 305 (520)
Q Consensus 242 ~l~~-~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~--~~~~v~~~~-~~~~~l~~~~-d~-----~i~iwd~~~~ 305 (520)
+++. ++...++|+.| .++..||..+.+-...-. ....-.++. .+|.+.++|+ || ++-.||+.+.
T Consensus 327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~ 406 (571)
T KOG4441|consen 327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTN 406 (571)
T ss_pred cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCC
Confidence 4444 77778888888 367788888776333222 111122233 6777777777 64 4888998876
Q ss_pred eeeEEeecccccceEEEE-ecCCCCEEEEEeCCC------eEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEE
Q 009993 306 CLLTVVNGAHVGNTKSLA-RSHTGDFLFTGGEDG------AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLV 378 (520)
Q Consensus 306 ~~~~~~~~~~~~~i~~l~-~s~~~~~l~tg~~dg------~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~ 378 (520)
+--..-. ......... ..-+|.+.++|+.++ ++..||..++.- ..+..+..-........+++...+
T Consensus 407 ~W~~va~--m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W----~~~~~M~~~R~~~g~a~~~~~iYv 480 (571)
T KOG4441|consen 407 KWTPVAP--MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW----TLIAPMNTRRSGFGVAVLNGKIYV 480 (571)
T ss_pred cccccCC--CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce----eecCCcccccccceEEEECCEEEE
Confidence 4222111 111111111 122678888888654 467788777632 222233222333334555777888
Q ss_pred EEeCCCc-----EEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCe-----EEEE
Q 009993 379 SAAGDGK-----LSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGI-----VRIW 448 (520)
Q Consensus 379 s~s~dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~-----v~iw 448 (520)
.||.|+. |..||..+..-.. + .........+-....++...++||.||. |..|
T Consensus 481 vGG~~~~~~~~~VE~ydp~~~~W~~-------------v----~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~y 543 (571)
T KOG4441|consen 481 VGGFDGTSALSSVERYDPETNQWTM-------------V----APMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECY 543 (571)
T ss_pred ECCccCCCccceEEEEcCCCCceeE-------------c----ccCccccccccEEEECCEEEEEecccCccccceeEEc
Confidence 8887763 6778877632110 0 1112222333345556778899998884 5556
Q ss_pred eCCch
Q 009993 449 NFSQA 453 (520)
Q Consensus 449 d~~~~ 453 (520)
|..+.
T Consensus 544 dp~~d 548 (571)
T KOG4441|consen 544 DPETD 548 (571)
T ss_pred CCCCC
Confidence 65544
No 354
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.51 E-value=0.0083 Score=61.33 Aligned_cols=225 Identities=16% Similarity=0.152 Sum_probs=127.9
Q ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEE--EeCCCCceEEEEecCCCEEEEEeCC-C-----cEEEEEcccCccee
Q 009993 153 SAKLLFTSGYDS------IVRMWHLEDGFSIA--SSKPLGCTIRAVAADKKLLVAGGTD-G-----FIHCWRAVEVLPHL 218 (520)
Q Consensus 153 ~~~~l~sgs~dg------~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~sg~~d-g-----~i~vwd~~~~~~~~ 218 (520)
.+.+++.|+.++ .+..+|..++.-.. .+............++...++|+.| | .+..||..++.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~--- 360 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ--- 360 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCc---
Confidence 456777887773 57788887774332 2222222222333677888899998 3 35566655542
Q ss_pred eeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCC-----eEEEEECCCCcEEEEeeeccCEE---EEeeCCCEEE
Q 009993 219 FDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDM-----TVRVWDRALLKCLKVLRHSDWVY---GLAPHDTTVA 290 (520)
Q Consensus 219 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg-----~v~iwd~~~~~~~~~~~~~~~v~---~~~~~~~~l~ 290 (520)
......+............+|...++|+.|| +|-.||..+.+-...-....... ....++.+.+
T Consensus 361 --------W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi 432 (571)
T KOG4441|consen 361 --------WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYI 432 (571)
T ss_pred --------eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEE
Confidence 2222233333333434445888889999886 46678877654333322211222 2236777777
Q ss_pred EEc-C------CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCe-----EEEEEcccCccccceeeee
Q 009993 291 STS-G------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA-----IHMYEIINDCTEANVLLVA 358 (520)
Q Consensus 291 ~~~-d------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~-----i~iwd~~~~~~~~~~~~~~ 358 (520)
+|+ + .++..||+.++.-...-.-.....-..++. -++.+.+.|+.|+. |..||..+..- ..+.
T Consensus 433 ~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W----~~v~ 507 (571)
T KOG4441|consen 433 IGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQW----TMVA 507 (571)
T ss_pred EcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCce----eEcc
Confidence 777 4 348889998764322111000111111222 26778888887763 67788777631 3344
Q ss_pred eecCCcCCEEEEEecCCEEEEEeCCC-----cEEEEeCCc
Q 009993 359 TWIPHTGPVNSLAFEFPWLVSAAGDG-----KLSLIDVRK 393 (520)
Q Consensus 359 ~~~~h~~~v~~l~~~~~~l~s~s~dg-----~i~vwd~~~ 393 (520)
.+......+.....+....++|+.|| +|..||..+
T Consensus 508 ~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 508 PMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred cCccccccccEEEECCEEEEEecccCccccceeEEcCCCC
Confidence 44445556666677788888888775 455666554
No 355
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.47 E-value=0.00015 Score=43.61 Aligned_cols=36 Identities=28% Similarity=0.525 Sum_probs=32.4
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEE
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWH 170 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd 170 (520)
...+.+|...|.++.|++++.++++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 445678999999999999999999999999999996
No 356
>PHA02713 hypothetical protein; Provisional
Probab=97.46 E-value=0.016 Score=59.45 Aligned_cols=186 Identities=9% Similarity=-0.034 Sum_probs=96.6
Q ss_pred EcCCEEEEEecC------CeEEEEECCCCcEEEEee--ec-cCEEEEeeCCCEEEEEc-CC-----eEEEEECCCCeeeE
Q 009993 245 LDLTRIYSGSWD------MTVRVWDRALLKCLKVLR--HS-DWVYGLAPHDTTVASTS-GS-----DVYIWDTNSGCLLT 309 (520)
Q Consensus 245 ~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~--~~-~~v~~~~~~~~~l~~~~-d~-----~i~iwd~~~~~~~~ 309 (520)
.++...+.|+.+ ..+..||..+..-...-. .. ........++++.+.|+ ++ .+..||+.+.+-..
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 366777777753 357788887764322211 11 12223336777777776 43 48889988763221
Q ss_pred --EeecccccceEEEEecCCCCEEEEEeCCC-----------------------eEEEEEcccCccccceeeeeeecCCc
Q 009993 310 --VVNGAHVGNTKSLARSHTGDFLFTGGEDG-----------------------AIHMYEIINDCTEANVLLVATWIPHT 364 (520)
Q Consensus 310 --~~~~~~~~~i~~l~~s~~~~~l~tg~~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~~h~ 364 (520)
.+.. .......+. -+|.+.+.|+.++ .+..||..+..- ..+..+....
T Consensus 382 ~~~mp~-~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W----~~v~~m~~~r 454 (557)
T PHA02713 382 LPDMPI-ALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW----ETLPNFWTGT 454 (557)
T ss_pred CCCCCc-ccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE----eecCCCCccc
Confidence 1111 011111222 2677777777653 467788766521 2222221112
Q ss_pred CCEEEEEecCCEEEEEeCCC------cEEEEeCCc-ccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEE
Q 009993 365 GPVNSLAFEFPWLVSAAGDG------KLSLIDVRK-LLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIV 437 (520)
Q Consensus 365 ~~v~~l~~~~~~l~s~s~dg------~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 437 (520)
.....+.+++...+.|+.++ .+..||..+ ..=. .+.+ +.......-....++...+
T Consensus 455 ~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~-------------~~~~----m~~~r~~~~~~~~~~~iyv 517 (557)
T PHA02713 455 IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE-------------LITT----TESRLSALHTILHDNTIMM 517 (557)
T ss_pred ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCee-------------Eccc----cCcccccceeEEECCEEEE
Confidence 22233455667667776542 356788775 2110 0011 1112222334455678999
Q ss_pred EecCCC--eEEEEeCCchH
Q 009993 438 CGGEEG--IVRIWNFSQAF 454 (520)
Q Consensus 438 sg~~Dg--~v~iwd~~~~~ 454 (520)
+||.|| .+..||..+.+
T Consensus 518 ~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 518 LHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred EeeecceeehhhcCccccc
Confidence 999998 66677776654
No 357
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.44 E-value=0.0094 Score=45.29 Aligned_cols=65 Identities=23% Similarity=0.254 Sum_probs=47.0
Q ss_pred eEEEEecC---CC-CEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe-cCCEEEEEeCCCcEEEEeCC
Q 009993 319 TKSLARSH---TG-DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF-EFPWLVSAAGDGKLSLIDVR 392 (520)
Q Consensus 319 i~~l~~s~---~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~vwd~~ 392 (520)
|++|++.. +| +.|++|++|..|++|+-.. .+..+.. .+.|+++.. .+..++.+-.+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--------~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--------IVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--------EEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCc
Confidence 56666654 32 5799999999999998543 3444433 346666666 56899999999999999764
No 358
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.31 E-value=0.0038 Score=63.14 Aligned_cols=105 Identities=16% Similarity=0.139 Sum_probs=79.0
Q ss_pred EEEEccCCCEEEEEeC----CCeEEEEECCCCcEEEE--eCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeee
Q 009993 147 TVFVLASAKLLFTSGY----DSIVRMWHLEDGFSIAS--SKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD 220 (520)
Q Consensus 147 ~l~~~~~~~~l~sgs~----dg~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 220 (520)
-..|+|...+++.++. .|.|.||- ++|++-.. .+.|. ...|+.|..-.|+.|-.-|.+.+|...+.+
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~ha-tSLCWHpe~~vLa~gwe~g~~~v~~~~~~e----- 92 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHA-TSLCWHPEEFVLAQGWEMGVSDVQKTNTTE----- 92 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceeh-hhhccChHHHHHhhccccceeEEEecCCce-----
Confidence 3468898898888764 57888885 56664332 22332 236777888899999999999999976542
Q ss_pred ccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCC
Q 009993 221 ISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRAL 266 (520)
Q Consensus 221 ~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~ 266 (520)
.-.....|..+|..+.| +|+.++++..-|.|.+|....
T Consensus 93 --------~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 93 --------THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred --------eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 22234469999999999 889999999999999998764
No 359
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.28 E-value=0.15 Score=47.35 Aligned_cols=190 Identities=14% Similarity=0.100 Sum_probs=114.3
Q ss_pred EEEccCCCEEEEEe--CCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCc
Q 009993 148 VFVLASAKLLFTSG--YDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSE 225 (520)
Q Consensus 148 l~~~~~~~~l~sgs--~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~ 225 (520)
++++.||++++... --..|.|-|+..++.+..+...++.-.-- ..+..+.+-+.||.+.-..+.......
T Consensus 100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP-~~~~~F~~lC~DGsl~~v~Ld~~Gk~~------- 171 (342)
T PF06433_consen 100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYP-SGNRGFSMLCGDGSLLTVTLDADGKEA------- 171 (342)
T ss_dssp EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEE-EETTEEEEEETTSCEEEEEETSTSSEE-------
T ss_pred eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEe-cCCCceEEEecCCceEEEEECCCCCEe-------
Confidence 46788888777653 34568899999988888776554432211 223468888999999888886432111
Q ss_pred cccceEEeccCCCCeE-EEEE--cCCEEEEEecCCeEEEEECCCCcEEE--Eee-------------eccCEEEEeeC-C
Q 009993 226 KQNTQFRLWEHEGPIT-SLAL--DLTRIYSGSWDMTVRVWDRALLKCLK--VLR-------------HSDWVYGLAPH-D 286 (520)
Q Consensus 226 ~~~~~~~~~~h~~~v~-~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~--~~~-------------~~~~v~~~~~~-~ 286 (520)
......+..-..++. .-.+ .+..++--+.+|.|+--|+....... .+. ..-.+.++.+. +
T Consensus 172 -~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~ 250 (342)
T PF06433_consen 172 -QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASG 250 (342)
T ss_dssp -EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTT
T ss_pred -EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccC
Confidence 111112222222222 1122 44566668888999988887554222 111 12234556543 3
Q ss_pred CEEEEEc---CC-------eEEEEECCCCeeeEEeecccccceEEEEecCCCC-EEEEE-eCCCeEEEEEcccC
Q 009993 287 TTVASTS---GS-------DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD-FLFTG-GEDGAIHMYEIIND 348 (520)
Q Consensus 287 ~~l~~~~---d~-------~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~-~l~tg-~~dg~i~iwd~~~~ 348 (520)
++++.-. ++ .|-++|+.+++.+.++.. ..++.++..+.+.+ +|++. ..++.+.+||..++
T Consensus 251 rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l--~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 251 RLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL--EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp EEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE--EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred eEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC--CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 4433322 12 389999999999999974 34577899988776 55544 46899999999999
No 360
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.24 E-value=0.14 Score=45.97 Aligned_cols=178 Identities=15% Similarity=0.082 Sum_probs=108.2
Q ss_pred cEEEEEEccCCCEEEEEeCCC--eEEEEECCCCcEEEEeCCC-CceEEEEe-cCCCEEEEEeCCCcEEEEEcccCcceee
Q 009993 144 AVLTVFVLASAKLLFTSGYDS--IVRMWHLEDGFSIASSKPL-GCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLF 219 (520)
Q Consensus 144 ~V~~l~~~~~~~~l~sgs~dg--~v~vwd~~~~~~~~~~~~~-~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 219 (520)
-...+.|..+|.++-+.+.-| .|+.+|+.+|+......-. ..---.+. .++....---.++...+||..+-.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~---- 121 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLK---- 121 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTE----
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccce----
Confidence 345677877888888877766 7999999999876554311 11111122 133333344557888888876532
Q ss_pred eccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee---eccC---EEEEe-eCCCEEEEE
Q 009993 220 DISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDW---VYGLA-PHDTTVAST 292 (520)
Q Consensus 220 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~---v~~~~-~~~~~l~~~ 292 (520)
...++ ...+.=..++.+++.|+.......+.++|..+.+....+. ...+ ++-+. .+|...+-.
T Consensus 122 ---------~~~~~-~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANV 191 (264)
T PF05096_consen 122 ---------KIGTF-PYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANV 191 (264)
T ss_dssp ---------EEEEE-E-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEE
T ss_pred ---------EEEEE-ecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEe
Confidence 22222 2234556778888888888878899999999988888776 2333 34444 455444444
Q ss_pred c-CCeEEEEECCCCeeeEEeecc--------------cccceEEEEecCCCCEEEEEe
Q 009993 293 S-GSDVYIWDTNSGCLLTVVNGA--------------HVGNTKSLARSHTGDFLFTGG 335 (520)
Q Consensus 293 ~-d~~i~iwd~~~~~~~~~~~~~--------------~~~~i~~l~~s~~~~~l~tg~ 335 (520)
- ...|...|+.+|+....+... ...-.+.+++.|..+.+...+
T Consensus 192 W~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 192 WQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 4 788999999999988776410 123578999998776555443
No 361
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.15 Score=45.78 Aligned_cols=274 Identities=12% Similarity=0.059 Sum_probs=163.0
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEE--eCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeecc
Q 009993 145 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIAS--SKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS 222 (520)
Q Consensus 145 V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 222 (520)
+..+.++ +++.+.+..+.-++|.|+.+...... +-.......++.-.|++...+..|.-+.+.|+.+...
T Consensus 89 ~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpss------ 160 (370)
T COG5276 89 FADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSS------ 160 (370)
T ss_pred hheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCC------
Confidence 3444554 66778888888899999986643222 2222345567778899999988666677888876532
Q ss_pred CCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEe---eeccCEEEEeeCCCEEEEEc-CCeEE
Q 009993 223 GSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVL---RHSDWVYGLAPHDTTVASTS-GSDVY 298 (520)
Q Consensus 223 ~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~l~~~~-d~~i~ 298 (520)
....-++......-..++..|++-+.+..|+-+.+-|+........+ .....+.++.+.+++..... +..+.
T Consensus 161 ----P~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvl 236 (370)
T COG5276 161 ----PQLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVL 236 (370)
T ss_pred ----ceeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceE
Confidence 22333344445555778889999999999999999999765443333 34557888885555544444 77788
Q ss_pred EEECCCCeeeEEeecccccceEEE-EecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEE
Q 009993 299 IWDTNSGCLLTVVNGAHVGNTKSL-ARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWL 377 (520)
Q Consensus 299 iwd~~~~~~~~~~~~~~~~~i~~l-~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l 377 (520)
+-|..+......+.......+.++ .+.-.+++......+.-+-+-|+.+...+ .....+......-..+...+.++
T Consensus 237 ivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~sp---fl~ss~~t~g~~a~gi~ay~~y~ 313 (370)
T COG5276 237 IVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSP---FLSSSLDTAGYQAAGIRAYGNYN 313 (370)
T ss_pred EEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCC---chhccccCCCccccceEEecCee
Confidence 888887765555543233333333 22224666666666666777787766321 11222222222445566666666
Q ss_pred EEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCC
Q 009993 378 VSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFS 451 (520)
Q Consensus 378 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~ 451 (520)
..+..+ ...+-+.......... +.+. .-....++..+.+.+.+...++-+.||+..
T Consensus 314 yiadkn-~g~vV~~s~~s~m~~~--------------~g~~---ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 314 YIADKN-TGAVVDASPPSMMDKR--------------PGRP---TIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred EeccCC-ceEEEeCCChhhcccc--------------cCcc---eEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 666655 4555565543221110 0000 011222334445588888889999999863
No 362
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.17 E-value=0.42 Score=50.13 Aligned_cols=303 Identities=12% Similarity=0.112 Sum_probs=150.9
Q ss_pred cccEEEEEEccCC------CEEEEEeCCCeEEEEEC-CCCcEEEEe--CC--CCceE--EEEecCCCEEEEEeCCCcEEE
Q 009993 142 TEAVLTVFVLASA------KLLFTSGYDSIVRMWHL-EDGFSIASS--KP--LGCTI--RAVAADKKLLVAGGTDGFIHC 208 (520)
Q Consensus 142 ~~~V~~l~~~~~~------~~l~sgs~dg~v~vwd~-~~~~~~~~~--~~--~~~~v--~~~~~~~~~l~sg~~dg~i~v 208 (520)
...|.|+.++|-| ++++.|.++..+.+--. .+...+... .+ -...| .++..+..+|.++..||.+..
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 4689999999742 37888988776655433 333333222 11 11122 234466889999999999887
Q ss_pred EEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cC-CEEEEEecCCeEEEEECCCCcEEEEee--eccCEEEEe
Q 009993 209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DL-TRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA 283 (520)
Q Consensus 209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~ 283 (520)
+.+.......-+ ..+..--..++.--.| .+ +.+++++ |+-..+|..+..-+...+. .-..+..+.
T Consensus 610 fv~d~~tg~lsd---------~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s-drP~viY~~n~kLv~spls~kev~~~c~f~ 679 (1096)
T KOG1897|consen 610 FVLDINTGQLSD---------RKKVTLGTQPISLRTFSSKSRTAVFALS-DRPTVIYSSNGKLVYSPLSLKEVNHMCPFN 679 (1096)
T ss_pred EEEEcccceEcc---------ccccccCCCCcEEEEEeeCCceEEEEeC-CCCEEEEecCCcEEEeccchHHhhhhcccc
Confidence 655433211111 1111112334443344 33 3444444 4555566543322222222 222233333
Q ss_pred --eCCCEEEEEcCCeEEEEECCCCee--eEEeecccccceEEEEecCCCCEEEEEeCC-----------C---eEEEEEc
Q 009993 284 --PHDTTVASTSGSDVYIWDTNSGCL--LTVVNGAHVGNTKSLARSHTGDFLFTGGED-----------G---AIHMYEI 345 (520)
Q Consensus 284 --~~~~~l~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d-----------g---~i~iwd~ 345 (520)
.-+..++.+..+.+++.-+..-+. ++++. -......+++.+....+++.+.. . .++++|-
T Consensus 680 s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvp--l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~ 757 (1096)
T KOG1897|consen 680 SDAYPDSLASANGGALTIGTIDEIQKLHIRTVP--LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQ 757 (1096)
T ss_pred cccCCceEEEecCCceEEEEecchhhcceeeec--CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecC
Confidence 335567777777787776654332 23332 44556777777654444444321 1 2455554
Q ss_pred ccCccccceeeeeeecCC--cCCEEEEEe--cC-CEEEEEeC----------CCcEEEEeCCcccccCCCCCCCceeeee
Q 009993 346 INDCTEANVLLVATWIPH--TGPVNSLAF--EF-PWLVSAAG----------DGKLSLIDVRKLLRSGRPTSGKRVSRVI 410 (520)
Q Consensus 346 ~~~~~~~~~~~~~~~~~h--~~~v~~l~~--~~-~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 410 (520)
++.+. .....+... ...|.++.| +| .++++|.. .|.|.|+.+....
T Consensus 758 nTf~v----l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~--------------- 818 (1096)
T KOG1897|consen 758 NTFEV----LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN--------------- 818 (1096)
T ss_pred CceeE----EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC---------------
Confidence 44311 111111111 123445556 33 46777654 4666666665411
Q ss_pred ecCCCcccccC--cceeeEEEE-ecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCc
Q 009993 411 EVEPPQRMLHG--FECNLLSVD-IGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGR 487 (520)
Q Consensus 411 ~~~~~~~~~~~--~~~~v~~~~-~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 487 (520)
.....+. -.+.+.++. ++++++|.-+ ..|++|++.++++++...... .....+...-.|..
T Consensus 819 ----~L~~v~e~~v~Gav~aL~~fngkllA~In--~~vrLye~t~~~eLr~e~~~~----------~~~~aL~l~v~gde 882 (1096)
T KOG1897|consen 819 ----SLELVAETVVKGAVYALVEFNGKLLAGIN--QSVRLYEWTTERELRIECNIS----------NPIIALDLQVKGDE 882 (1096)
T ss_pred ----ceeeeeeeeeccceeehhhhCCeEEEecC--cEEEEEEccccceehhhhccc----------CCeEEEEEEecCcE
Confidence 1111111 123344443 5566665554 589999999987666544332 22345555555555
Q ss_pred cccc
Q 009993 488 TDQC 491 (520)
Q Consensus 488 ~~~~ 491 (520)
++.+
T Consensus 883 I~Vg 886 (1096)
T KOG1897|consen 883 IAVG 886 (1096)
T ss_pred EEEe
Confidence 5553
No 363
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.17 E-value=0.0014 Score=39.08 Aligned_cols=37 Identities=32% Similarity=0.653 Sum_probs=31.7
Q ss_pred eeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEE
Q 009993 307 LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE 344 (520)
Q Consensus 307 ~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd 344 (520)
+...+. .|...+.++.|.+++..+++++.|+.+++|+
T Consensus 4 ~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLK-GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEE-ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 444454 5888999999999999999999999999996
No 364
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.16 E-value=0.011 Score=61.58 Aligned_cols=137 Identities=11% Similarity=0.084 Sum_probs=88.1
Q ss_pred CCEEEEE-eCCCcEEEEEcccCcceeeeccCCccccceEEeccCC-CCeEEEEE-------cCCEEEEEecCCeEEEEEC
Q 009993 194 KKLLVAG-GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE-GPITSLAL-------DLTRIYSGSWDMTVRVWDR 264 (520)
Q Consensus 194 ~~~l~sg-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~-------~~~~l~s~s~dg~v~iwd~ 264 (520)
.++|+.- .....|+-.|++.|. .+.....|. .+|..++- .+...+.|-.+..+..||.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GK-------------VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDp 559 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGK-------------VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDP 559 (794)
T ss_pred cceEeecCCCCCceEEEecCCCc-------------EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEecc
Confidence 3344433 345677777887763 333333343 33666665 2345677888899999998
Q ss_pred CCCc--EEE----EeeeccCEEEEe-eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC
Q 009993 265 ALLK--CLK----VLRHSDWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE 336 (520)
Q Consensus 265 ~~~~--~~~----~~~~~~~v~~~~-~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~ 336 (520)
+-.. ++. .+.......|++ ....+||+|+ +|.|++||- .|..-++...+-..+|..|..+.||++|++.+.
T Consensus 560 R~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 560 RLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK 638 (794)
T ss_pred CCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence 8532 222 122445566777 4555677777 999999995 343333443467889999999999999876654
Q ss_pred CCeEEEEEc
Q 009993 337 DGAIHMYEI 345 (520)
Q Consensus 337 dg~i~iwd~ 345 (520)
..+.+++.
T Consensus 639 -tyLlLi~t 646 (794)
T PF08553_consen 639 -TYLLLIDT 646 (794)
T ss_pred -ceEEEEEE
Confidence 45667765
No 365
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.14 E-value=0.22 Score=46.34 Aligned_cols=175 Identities=13% Similarity=0.064 Sum_probs=102.6
Q ss_pred CeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEe----------CCCcEEEEEcccCcceeeeccCCccccceEEe
Q 009993 164 SIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGG----------TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL 233 (520)
Q Consensus 164 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 233 (520)
+.+.|.|.++++.+..+..--..-..++++++.+++++ ..-.|.+||..+-.... ...+
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~-----------EI~i 85 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTG-----------EIEI 85 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEE-----------EEEE
T ss_pred ceEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccc-----------eEec
Confidence 47999999999988777644444456789999888753 33458899987753211 1111
Q ss_pred cc-------CCCCeEEEEEcCCEEEEEe--cCCeEEEEECCCCcEEEEeeeccCEEEEe-eCCCEEEEEcCCeEEEEECC
Q 009993 234 WE-------HEGPITSLALDLTRIYSGS--WDMTVRVWDRALLKCLKVLRHSDWVYGLA-PHDTTVASTSGSDVYIWDTN 303 (520)
Q Consensus 234 ~~-------h~~~v~~l~~~~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~d~~i~iwd~~ 303 (520)
+. .......+.-++++++..- --.+|.|-|+..++.+..+..++...-.- ....+...|.||.+.-..+.
T Consensus 86 P~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld 165 (342)
T PF06433_consen 86 PPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLD 165 (342)
T ss_dssp TTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEET
T ss_pred CCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEEC
Confidence 11 1122233444777665543 34578888888888888777555433333 34455556669998888887
Q ss_pred -CCeeeEEee---cccccce-EEEEecCCCCEEEEEeCCCeEEEEEcccCc
Q 009993 304 -SGCLLTVVN---GAHVGNT-KSLARSHTGDFLFTGGEDGAIHMYEIINDC 349 (520)
Q Consensus 304 -~~~~~~~~~---~~~~~~i-~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~ 349 (520)
.|+...+.. .....++ ..-++...+..++--+.+|.|+--|+....
T Consensus 166 ~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 166 ADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp STSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS
T ss_pred CCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc
Confidence 444432211 1111122 222344445555557789999888887764
No 366
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.11 E-value=0.021 Score=58.06 Aligned_cols=68 Identities=12% Similarity=0.081 Sum_probs=57.5
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEE--EEecCCCEEEEEeCCCcEEEEEcc
Q 009993 145 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR--AVAADKKLLVAGGTDGFIHCWRAV 212 (520)
Q Consensus 145 V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~dg~i~vwd~~ 212 (520)
+++++|+|..-.|+.|-.-|.+.+|...+.+.......|..++. .++++|..++++..-|.|.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 46699999988899999999999999887776666667776655 556999999999999999999875
No 367
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.05 E-value=0.22 Score=44.81 Aligned_cols=200 Identities=12% Similarity=0.081 Sum_probs=100.4
Q ss_pred hhhccccccEEEEEEccCCC-EEEEEeCCCeEEEEECCCCcEEEEeCCC---CceEEEEecCCCEEEEEeCCCcEEEEEc
Q 009993 136 DVLYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSKPL---GCTIRAVAADKKLLVAGGTDGFIHCWRA 211 (520)
Q Consensus 136 ~~l~~h~~~V~~l~~~~~~~-~l~sgs~dg~v~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 211 (520)
+.+.+-.+.+..++|+|+.+ ++++....+.|...+. +|+.++.+.-. ...-.++..++.++++--.++.+.+.++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 34556667799999999755 5556666788888886 47777766422 2222333355555555545888998887
Q ss_pred ccCcceeeeccCCccccceEE--e-ccCCCCeEEEEEcC--CEEEEEecCCeEEEEECCC---CcEEEEee---------
Q 009993 212 VEVLPHLFDISGSEKQNTQFR--L-WEHEGPITSLALDL--TRIYSGSWDMTVRVWDRAL---LKCLKVLR--------- 274 (520)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~--~-~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~~---~~~~~~~~--------- 274 (520)
......+- ........ + ..++..+-.++||. +.|+.+-...-..+|.+.. ...+....
T Consensus 94 ~~~~~~~~-----~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 94 DDDTTSLD-----RADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp ----TT-------EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred eccccccc-----hhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence 44321100 00001111 1 13566789999944 6777777776666776653 22222211
Q ss_pred eccCEEEEe--e-CCCEEEEEc-CCeEEEEECCCCeeeEEeec--cc------ccceEEEEecCCCCEEEEEeCCCeEEE
Q 009993 275 HSDWVYGLA--P-HDTTVASTS-GSDVYIWDTNSGCLLTVVNG--AH------VGNTKSLARSHTGDFLFTGGEDGAIHM 342 (520)
Q Consensus 275 ~~~~v~~~~--~-~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~--~~------~~~i~~l~~s~~~~~l~tg~~dg~i~i 342 (520)
....+.++. + .+++++.+. +..|..+| .+|+.+..+.- +. -.+...|+|.++|++.++ ++-+..++
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~ 246 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYR 246 (248)
T ss_dssp -SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEE
T ss_pred eeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEE
Confidence 112233444 3 345666666 78899999 66766555442 11 136789999999865554 47666655
Q ss_pred E
Q 009993 343 Y 343 (520)
Q Consensus 343 w 343 (520)
|
T Consensus 247 f 247 (248)
T PF06977_consen 247 F 247 (248)
T ss_dssp E
T ss_pred e
Confidence 5
No 368
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.75 E-value=0.0052 Score=63.97 Aligned_cols=107 Identities=18% Similarity=0.228 Sum_probs=76.6
Q ss_pred cCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcccccee
Q 009993 277 DWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVL 355 (520)
Q Consensus 277 ~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~ 355 (520)
..+.+.+..+..++.|+ .|.+-..|....-........-.++|++++|+.+|.+++.|-.+|.|.+||+..+ +
T Consensus 90 ~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~------k 163 (1206)
T KOG2079|consen 90 AGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA------K 163 (1206)
T ss_pred cceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC------c
Confidence 34445556666777777 6888888877642211111124679999999999999999999999999999998 6
Q ss_pred eeeeecCCcCCEEEEEe----cC-CEEEEEeCCCcEEEEeC
Q 009993 356 LVATWIPHTGPVNSLAF----EF-PWLVSAAGDGKLSLIDV 391 (520)
Q Consensus 356 ~~~~~~~h~~~v~~l~~----~~-~~l~s~s~dg~i~vwd~ 391 (520)
.++.+..|..+.+++-+ +. ..++++...|. +|.+
T Consensus 164 ~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 164 ILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 77777777777766655 23 46778877776 5544
No 369
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.71 E-value=0.53 Score=44.03 Aligned_cols=178 Identities=19% Similarity=0.200 Sum_probs=93.7
Q ss_pred EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cC-CEEEEEecCCeEEEEECCCCcEEEEe
Q 009993 196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DL-TRIYSGSWDMTVRVWDRALLKCLKVL 273 (520)
Q Consensus 196 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~-~~l~s~s~dg~v~iwd~~~~~~~~~~ 273 (520)
++++--..+.|.-|+..++.... + .+.+.+.++.. +. ..|+++. .| +.+++.+++..+..+
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~~~--------------~-~~p~~~~~~~~~d~~g~Lv~~~-~g-~~~~~~~~~~~~t~~ 101 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKKRV--------------F-PSPGGFSSGALIDAGGRLIACE-HG-VRLLDPDTGGKITLL 101 (307)
T ss_pred EEEEeCCCCeEEEecCCcCceEE--------------E-ECCCCcccceeecCCCeEEEEc-cc-cEEEeccCCceeEEe
Confidence 34454556677777765542211 1 22333344444 44 4454444 33 567777666553333
Q ss_pred e---ec---cCEEE--EeeCCCEEEEEcC------------CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEE
Q 009993 274 R---HS---DWVYG--LAPHDTTVASTSG------------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFT 333 (520)
Q Consensus 274 ~---~~---~~v~~--~~~~~~~l~~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~t 333 (520)
. .. ...+. +.++|.+.++... |.++.+|. .+..++.+. .+-...+.++||||++.|+.
T Consensus 102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~-~~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD-DDLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec-CcEEecCceEECCCCCEEEE
Confidence 2 11 12222 3377777665433 34666665 444444443 45667789999999988877
Q ss_pred EeCC-CeEEEEEccc-CccccceeeeeeecCCcCCEEEEEec--CCEEEEEeCCC-cEEEEeCC
Q 009993 334 GGED-GAIHMYEIIN-DCTEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDG-KLSLIDVR 392 (520)
Q Consensus 334 g~~d-g~i~iwd~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg-~i~vwd~~ 392 (520)
+... +.|+-|++.. ............+....+..-.++.+ +.+.+++..+| .|.+|+..
T Consensus 180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 7554 7788888763 11111111122222234455555554 34443444444 88999887
No 370
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.012 Score=57.94 Aligned_cols=73 Identities=16% Similarity=0.049 Sum_probs=62.1
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEE---EEecCCCEEEEEeCCCcEEEEEcccCc
Q 009993 142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR---AVAADKKLLVAGGTDGFIHCWRAVEVL 215 (520)
Q Consensus 142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~---~~~~~~~~l~sg~~dg~i~vwd~~~~~ 215 (520)
.-.|.-+.|+|.-.++|++..+|.|.+..+. .+.+.+++.++..++ |+.|||+.|+.|-.||+|++-|++++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 3467888999999999999999999999987 778888875655554 555999999999999999999998774
No 371
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.63 E-value=0.81 Score=45.06 Aligned_cols=144 Identities=16% Similarity=0.094 Sum_probs=75.1
Q ss_pred CCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEee--------eccCEEEEe-eCCCEEEEEcCCeEEEEECCCCe-
Q 009993 238 GPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR--------HSDWVYGLA-PHDTTVASTSGSDVYIWDTNSGC- 306 (520)
Q Consensus 238 ~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--------~~~~v~~~~-~~~~~l~~~~d~~i~iwd~~~~~- 306 (520)
+.|.++.| +...|+....||+++++|+.. +....+. ....+.... .+...++...++.+++.+-....
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G-~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~ 159 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFG-EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPV 159 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCCC-ceeechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccc
Confidence 78999999 667888889999999999863 3311111 111122222 22334444445555554332221
Q ss_pred eeEEe---ecc----ccc-ceEE-EEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--C
Q 009993 307 LLTVV---NGA----HVG-NTKS-LARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P 375 (520)
Q Consensus 307 ~~~~~---~~~----~~~-~i~~-l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~ 375 (520)
..+.+ ... +.. .... ..++.+....+....++.+.+.+-.... . + ...+++..++.+| +
T Consensus 160 ~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~------~---i-~~~~~i~~iavSpng~ 229 (410)
T PF04841_consen 160 KLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK------Q---I-DSDGPIIKIAVSPNGK 229 (410)
T ss_pred hhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc------c---c-cCCCCeEEEEECCCCC
Confidence 11111 100 000 0000 2233444444444555555544422210 0 1 2245889988876 6
Q ss_pred EEEEEeCCCcEEEEeCC
Q 009993 376 WLVSAAGDGKLSLIDVR 392 (520)
Q Consensus 376 ~l~s~s~dg~i~vwd~~ 392 (520)
+++.-..+|.+.|....
T Consensus 230 ~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 230 FIALFTDSGNLWVVSSD 246 (410)
T ss_pred EEEEEECCCCEEEEECc
Confidence 88888889999888654
No 372
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.63 E-value=0.38 Score=49.02 Aligned_cols=105 Identities=15% Similarity=0.047 Sum_probs=66.2
Q ss_pred cCCEEEEEecCCeEEEEECCCCcEEEEeeecc--CEE----------EEeeCCCEEEEEc-CCeEEEEECCCCeeeEEee
Q 009993 246 DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSD--WVY----------GLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVN 312 (520)
Q Consensus 246 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~--~v~----------~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~ 312 (520)
.++.++.++.++.|.-.|..+++.+..+.... .+. .+...+..++.++ ++.+.-+|.++|+.+....
T Consensus 68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 46778888888999999999999888775221 111 1222334455555 9999999999999987765
Q ss_pred cccccceEEEEecC--CCCEEEEEeC------CCeEEEEEcccCcc
Q 009993 313 GAHVGNTKSLARSH--TGDFLFTGGE------DGAIHMYEIINDCT 350 (520)
Q Consensus 313 ~~~~~~i~~l~~s~--~~~~l~tg~~------dg~i~iwd~~~~~~ 350 (520)
......-..+.-+| .+..++++.. +|.|.-+|.++++.
T Consensus 148 ~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 148 NGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKL 193 (527)
T ss_pred cccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCce
Confidence 32111111111122 1334555432 68899999988854
No 373
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.59 E-value=0.71 Score=43.95 Aligned_cols=163 Identities=15% Similarity=0.099 Sum_probs=78.4
Q ss_pred ECCCCcEEEEeCCCCceEE-------EEecCCCEEEEEe-CCCc--EEEEEcccCcceeeeccCCccccceEEeccCC--
Q 009993 170 HLEDGFSIASSKPLGCTIR-------AVAADKKLLVAGG-TDGF--IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE-- 237 (520)
Q Consensus 170 d~~~~~~~~~~~~~~~~v~-------~~~~~~~~l~sg~-~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~-- 237 (520)
|..||..+..+........ ++..+|+.|+.++ .||. +.+.|+.++. ...+....
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~--------------i~QLTdg~g~ 81 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE--------------ITQLTDGPGD 81 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E--------------EEE---SS-B
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE--------------EEECccCCCC
Confidence 5667777776655444333 4557887665544 4655 5555666653 22222211
Q ss_pred CC-eEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee-eccCE---EEE-eeCCCEEEEEc----C-------------
Q 009993 238 GP-ITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWV---YGL-APHDTTVASTS----G------------- 294 (520)
Q Consensus 238 ~~-v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v---~~~-~~~~~~l~~~~----d------------- 294 (520)
.. -..++-+.+.++-......|+-.|+++.+....+. ....+ +-+ ..++..++... +
T Consensus 82 ~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~ 161 (386)
T PF14583_consen 82 NTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREF 161 (386)
T ss_dssp -TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHH
T ss_pred CccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHH
Confidence 11 12233355666555555788999999987665555 22222 222 24555554332 1
Q ss_pred ------CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCC----C-eEEEEEcccC
Q 009993 295 ------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED----G-AIHMYEIIND 348 (520)
Q Consensus 295 ------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d----g-~i~iwd~~~~ 348 (520)
..|.-.|+.+|+....+. ....+..+.|+|....+++-+.. . .-+||-+++.
T Consensus 162 ~~a~p~~~i~~idl~tG~~~~v~~--~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d 224 (386)
T PF14583_consen 162 YEARPHCRIFTIDLKTGERKVVFE--DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD 224 (386)
T ss_dssp HHC---EEEEEEETTT--EEEEEE--ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT
T ss_pred HhhCCCceEEEEECCCCceeEEEe--cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC
Confidence 136667888887665554 45667788999966555543332 2 2477877655
No 374
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.01 Score=58.23 Aligned_cols=84 Identities=17% Similarity=0.182 Sum_probs=55.8
Q ss_pred eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceE-EEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeee-e
Q 009993 284 PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTK-SLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT-W 360 (520)
Q Consensus 284 ~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~-~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~-~ 360 (520)
|.-.++|.+. +|.|.+..++ .+.+.+++. +...++ +++|.|||+.+++|-.||+|++.|+.++.. +.. .
T Consensus 30 P~~dLiA~~t~~gelli~R~n-~qRlwtip~-p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~------l~~~~ 101 (665)
T KOG4640|consen 30 PKMDLIATRTEKGELLIHRLN-WQRLWTIPI-PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR------LVSFL 101 (665)
T ss_pred CccchhheeccCCcEEEEEec-cceeEeccC-CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc------eeccc
Confidence 3334445544 4555555554 444555542 555566 999999999999999999999999999842 222 2
Q ss_pred cCCcCCEEEEEecCC
Q 009993 361 IPHTGPVNSLAFEFP 375 (520)
Q Consensus 361 ~~h~~~v~~l~~~~~ 375 (520)
..-...|.++-|++.
T Consensus 102 ~s~e~~is~~~w~~~ 116 (665)
T KOG4640|consen 102 FSVETDISKGIWDRI 116 (665)
T ss_pred cccccchheeecccc
Confidence 233457777877643
No 375
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.56 E-value=0.54 Score=42.26 Aligned_cols=177 Identities=15% Similarity=0.074 Sum_probs=102.2
Q ss_pred cCCCEEEEEeCCC--cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEE-ecCCeEEEEECCCCc
Q 009993 192 ADKKLLVAGGTDG--FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSG-SWDMTVRVWDRALLK 268 (520)
Q Consensus 192 ~~~~~l~sg~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~-s~dg~v~iwd~~~~~ 268 (520)
.++.++-+.+.-| .|+.+|+.++... ....+. ..---..++.-++.|+-- =.++...+||..+.+
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~-----------~~~~l~-~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVL-----------QSVPLP-PRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEE-----------EEEE-T-TT--EEEEEEETTEEEEEESSSSEEEEEETTTTE
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEE-----------EEEECC-ccccceeEEEECCEEEEEEecCCeEEEEccccce
Confidence 5566666766665 6888998887421 111111 111222344434444433 356889999999999
Q ss_pred EEEEeeeccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecc----cccceEEEEecCCCCEEEEEeCCCeEEEE
Q 009993 269 CLKVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGA----HVGNTKSLARSHTGDFLFTGGEDGAIHMY 343 (520)
Q Consensus 269 ~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~----~~~~i~~l~~s~~~~~l~tg~~dg~i~iw 343 (520)
.+.++.....=..+..++..|+.+. ...++++|+.+.+....+.-. .-..++-+.+. +|...|=.-....|...
T Consensus 122 ~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I 200 (264)
T PF05096_consen 122 KIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI 200 (264)
T ss_dssp EEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence 9999987777788888887777766 789999999988776665421 12245666665 56666666667778888
Q ss_pred EcccCccccceeeee---e------ecCCcCCEEEEEecC---CEEEEEe
Q 009993 344 EIINDCTEANVLLVA---T------WIPHTGPVNSLAFEF---PWLVSAA 381 (520)
Q Consensus 344 d~~~~~~~~~~~~~~---~------~~~h~~~v~~l~~~~---~~l~s~s 381 (520)
|..++........-. . ..+.....+.|+++| .+++||-
T Consensus 201 dp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 201 DPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp ETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred eCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 888874321110000 0 001145689999976 3666663
No 376
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.56 E-value=0.0012 Score=61.72 Aligned_cols=45 Identities=27% Similarity=0.516 Sum_probs=41.8
Q ss_pred cccCCCHHHHHHHccCCChhhhHHHhhhhhhHHHhhcCcchhhhh
Q 009993 63 TITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEF 107 (520)
Q Consensus 63 ~~~~LP~el~~~i~~~L~~~~l~~~s~v~~~~~~~~~~~~lW~~~ 107 (520)
.-..||+|+..++|+|||..+|++++++|+.|+.++.|..-|..+
T Consensus 71 ~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~i 115 (483)
T KOG4341|consen 71 ISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHI 115 (483)
T ss_pred ccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceee
Confidence 456699999999999999999999999999999999999989765
No 377
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.035 Score=58.21 Aligned_cols=68 Identities=19% Similarity=0.320 Sum_probs=53.2
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe-----cCCCEEEEEeCCCcEEEEEc
Q 009993 142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-----ADKKLLVAGGTDGFIHCWRA 211 (520)
Q Consensus 142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~-----~~~~~l~sg~~dg~i~vwd~ 211 (520)
.++|++++|+.+|.+++.|-.+|.|.+||+..++.++.+..|+.+...+- .++..++++...|. +|..
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 57999999999999999999999999999999998888776655544331 44456777776675 5654
No 378
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.53 E-value=0.25 Score=44.44 Aligned_cols=202 Identities=14% Similarity=0.130 Sum_probs=88.3
Q ss_pred EEEEe--eCCCEEEEEc--CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccce
Q 009993 279 VYGLA--PHDTTVASTS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANV 354 (520)
Q Consensus 279 v~~~~--~~~~~l~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~ 354 (520)
+..+. ++.+.|++.. .+.|..++. +|+.++.+...-.+....+++..++.++++--.++.+.++++.........
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~ 102 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDR 102 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--E
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccch
Confidence 44554 4434333333 455666665 356666665433566788888877777766656899999998554321111
Q ss_pred eeeeee-----cCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeE
Q 009993 355 LLVATW-----IPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLL 427 (520)
Q Consensus 355 ~~~~~~-----~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 427 (520)
.....+ ..+...+-.++|++ +.|+.+-...-..++.+..... ......... .... ..........
T Consensus 103 ~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~------~~~~~~~~~-~~~~-~~~~~~~d~S 174 (248)
T PF06977_consen 103 ADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPG------GFDLFVSDD-QDLD-DDKLFVRDLS 174 (248)
T ss_dssp EEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-------SS--EEEE--HHHH--HT--SS---
T ss_pred hhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccC------ccceeeccc-cccc-cccceecccc
Confidence 111111 13455689999987 5777777776677777764210 000000000 0000 0011111233
Q ss_pred EEEecCC---EEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCccccc
Q 009993 428 SVDIGAD---RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQC 491 (520)
Q Consensus 428 ~~~~~~~---~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 491 (520)
++++++. +++..+....|..+| .+|..+... ...++..-..+.-.+.-.++|.++|...++.
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~-~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSL-SLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEE-E-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEE-EeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 3333333 666677777777777 333322110 0011110111222346788999999765543
No 379
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.51 E-value=0.01 Score=37.52 Aligned_cols=34 Identities=15% Similarity=0.060 Sum_probs=30.0
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcE
Q 009993 142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS 176 (520)
Q Consensus 142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~ 176 (520)
...|.+++|+|..++||.|+.||.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 357999999999999999999999999998 5544
No 380
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=96.51 E-value=0.0015 Score=56.92 Aligned_cols=81 Identities=22% Similarity=0.290 Sum_probs=61.1
Q ss_pred cccccCCCHHHHHHHccCC-ChhhhHHHhhhhhhHHHhhcCcchhhhhhhhhcCCCCCCCCCCCCCCCcccHHHhhhhhc
Q 009993 61 RSTITDLPPALISEILNCL-DPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELIDVLY 139 (520)
Q Consensus 61 ~~~~~~LP~el~~~i~~~L-~~~~l~~~s~v~~~~~~~~~~~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~l~ 139 (520)
.-.+.+||.|++..|+.-| |..+|..++++-...+.+.++..+||.++.-.|....-...+..+..-.+.|+++...|+
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~k~~q~dWkqmyf~L~ 278 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILSKKGQKDWKQMYFQLR 278 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccchhHHHHHHHHH
Confidence 3468999999999998777 899999999999999999999999999866555422222233334444477997766665
Q ss_pred cc
Q 009993 140 GH 141 (520)
Q Consensus 140 ~h 141 (520)
.|
T Consensus 279 r~ 280 (332)
T KOG3926|consen 279 RT 280 (332)
T ss_pred Hh
Confidence 44
No 381
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.96 Score=44.12 Aligned_cols=188 Identities=18% Similarity=0.189 Sum_probs=125.3
Q ss_pred EEEEEccCCC-EEEEEeCCCeEEEEECCCCcEEEEeC-CCCceEEEEecCCCEEEEEeC---CCcEEEEEcccCcceeee
Q 009993 146 LTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSK-PLGCTIRAVAADKKLLVAGGT---DGFIHCWRAVEVLPHLFD 220 (520)
Q Consensus 146 ~~l~~~~~~~-~l~sgs~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~l~sg~~---dg~i~vwd~~~~~~~~~~ 220 (520)
..+++++.+. ..++...++.|.+.|..+........ +....-..+.++++.++.+.. ++++.+.|..+...
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~---- 152 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV---- 152 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE----
Confidence 4667788777 44455556899999988777666553 344455677788887777665 67888888766532
Q ss_pred ccCCccccceEEeccCCCCeEEEEE--cCCEEEEEe-cCCeEEEEECCCCcEEE-E----ee--eccCEEEEeeCCCEEE
Q 009993 221 ISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDRALLKCLK-V----LR--HSDWVYGLAPHDTTVA 290 (520)
Q Consensus 221 ~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s-~dg~v~iwd~~~~~~~~-~----~~--~~~~v~~~~~~~~~l~ 290 (520)
......-..+ ..+++ +++.++... .+++|.+.|..+..... . .. .......+.+++..+.
T Consensus 153 ---------~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~y 222 (381)
T COG3391 153 ---------TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVY 222 (381)
T ss_pred ---------EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEE
Confidence 1122222223 56666 667555554 78999999987766653 1 11 2234455668998777
Q ss_pred EEc-C---CeEEEEECCCCeeeEE-eecccccceEEEEecCCCCEEEEEeC-CCeEEEEEcccC
Q 009993 291 STS-G---SDVYIWDTNSGCLLTV-VNGAHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIIND 348 (520)
Q Consensus 291 ~~~-d---~~i~iwd~~~~~~~~~-~~~~~~~~i~~l~~s~~~~~l~tg~~-dg~i~iwd~~~~ 348 (520)
+.. . +.+...|..++..... ...+.. ....+.++|+|..+.+... .+.+.+.|..+.
T Consensus 223 V~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 223 VANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred EEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 766 2 4899999988877665 222222 5667899999999888744 488999998876
No 382
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.46 E-value=1.6 Score=46.44 Aligned_cols=197 Identities=13% Similarity=-0.001 Sum_probs=114.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeCCCCce--------EEEEe------------------cCCCEEEEEeCCCcEE
Q 009993 154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT--------IRAVA------------------ADKKLLVAGGTDGFIH 207 (520)
Q Consensus 154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~--------v~~~~------------------~~~~~l~sg~~dg~i~ 207 (520)
+..|+.++.++.|.-.|..+|+.+..+...... +..++ ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 567888888999999999999998877543211 01111 1345888999999999
Q ss_pred EEEcccCcceeeeccCCccccceEEeccCCC---CeEE-EEEcCCEEEEEec----------CCeEEEEECCCCcEEEEe
Q 009993 208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEG---PITS-LALDLTRIYSGSW----------DMTVRVWDRALLKCLKVL 273 (520)
Q Consensus 208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~-l~~~~~~l~s~s~----------dg~v~iwd~~~~~~~~~~ 273 (520)
-.|..+|+.+-- ............+..... .+++ -.+.++.++.|+. +|.|+-+|.++|+.+..+
T Consensus 274 ALDA~TGk~~W~-fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCED-FGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEE-ecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999998864321 100000000000000000 0111 1124556666643 689999999999988776
Q ss_pred eec----------cC-----------EEEEeeCCCEEEEEc-------------------CCeEEEEECCCCeeeEEeec
Q 009993 274 RHS----------DW-----------VYGLAPHDTTVASTS-------------------GSDVYIWDTNSGCLLTVVNG 313 (520)
Q Consensus 274 ~~~----------~~-----------v~~~~~~~~~l~~~~-------------------d~~i~iwd~~~~~~~~~~~~ 313 (520)
... +. ..++.+...+++.+. .+.|.-.|.++|+....+..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 411 10 112222223332211 24577788899988877764
Q ss_pred ccc--------cceEEEEecC-CCC---EEEEEeCCCeEEEEEcccCccc
Q 009993 314 AHV--------GNTKSLARSH-TGD---FLFTGGEDGAIHMYEIINDCTE 351 (520)
Q Consensus 314 ~~~--------~~i~~l~~s~-~~~---~l~tg~~dg~i~iwd~~~~~~~ 351 (520)
.|. .+..-+.+.. +|+ .++.++.+|.++++|.++++..
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 221 1111222322 553 7889999999999999998654
No 383
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.44 E-value=0.19 Score=44.87 Aligned_cols=197 Identities=19% Similarity=0.278 Sum_probs=104.0
Q ss_pred hhhccccccEEEEEEccCCCEEEEEeCC-----CeEEEEECCCC-cEEEEeCCCCceEE--EEecCCCEEEEEeCCCcEE
Q 009993 136 DVLYGHTEAVLTVFVLASAKLLFTSGYD-----SIVRMWHLEDG-FSIASSKPLGCTIR--AVAADKKLLVAGGTDGFIH 207 (520)
Q Consensus 136 ~~l~~h~~~V~~l~~~~~~~~l~sgs~d-----g~v~vwd~~~~-~~~~~~~~~~~~v~--~~~~~~~~l~sg~~dg~i~ 207 (520)
+.+.||. .|+|||.+|++.-.| |.|-|||...+ ..+..+..|...-. .+.+||+.++.+. |-|.
T Consensus 113 RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIe 184 (366)
T COG3490 113 RHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIE 184 (366)
T ss_pred ceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--Ccee
Confidence 4456664 489999999987544 67999998755 45566666654443 4458999888764 3333
Q ss_pred EE--------EcccCcceeeecc-CCccccceEEec--cCCCCeEEEEEcC-CEEEEEe-cCC-----eEEEEECCCCcE
Q 009993 208 CW--------RAVEVLPHLFDIS-GSEKQNTQFRLW--EHEGPITSLALDL-TRIYSGS-WDM-----TVRVWDRALLKC 269 (520)
Q Consensus 208 vw--------d~~~~~~~~~~~~-~~~~~~~~~~~~--~h~~~v~~l~~~~-~~l~s~s-~dg-----~v~iwd~~~~~~ 269 (520)
.- |+.+.++.+.-+. ..........+. .+.-.|..++.++ +.+..|+ ..| --.+=-...++.
T Consensus 185 thpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~ 264 (366)
T COG3490 185 THPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEP 264 (366)
T ss_pred cccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCc
Confidence 22 2333322222221 111111222232 3455666666622 2233322 111 111111223333
Q ss_pred EEEee--------eccCEEEEe--eCCCEEEEEc--CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCC
Q 009993 270 LKVLR--------HSDWVYGLA--PHDTTVASTS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED 337 (520)
Q Consensus 270 ~~~~~--------~~~~v~~~~--~~~~~l~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d 337 (520)
+..+. ....|-+++ .+..+++..+ ++...+||..+|..+..-.. ..+..++ +...-+++.+.+
T Consensus 265 l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l---~daaGva--~~~~gf~vssg~ 339 (366)
T COG3490 265 LEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL---PDAAGVA--AAKGGFAVSSGQ 339 (366)
T ss_pred CcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc---cccccce--eccCceEEecCC
Confidence 33332 234556666 3356666666 57789999999987765431 1122222 234446666778
Q ss_pred CeEEEEEc
Q 009993 338 GAIHMYEI 345 (520)
Q Consensus 338 g~i~iwd~ 345 (520)
|.+.++.-
T Consensus 340 G~~~~~s~ 347 (366)
T COG3490 340 GRIIFYSR 347 (366)
T ss_pred ceEEeccc
Confidence 88888743
No 384
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.36 E-value=0.0078 Score=51.67 Aligned_cols=138 Identities=15% Similarity=0.068 Sum_probs=77.1
Q ss_pred EEEEEecCCeEEEEECCCCcEEEEee--eccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEE-EEe
Q 009993 249 RIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKS-LAR 324 (520)
Q Consensus 249 ~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~-l~~ 324 (520)
.+..-+.||.|+-++++..+....-. +... ..+..-+..+++|. +|.|++|+.............-...|.+ +.-
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~ 110 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN 110 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence 35566778999888876543221111 2222 44444455566666 9999999987321111111111222222 222
Q ss_pred cCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCc-CCEEEEEe--cCCEEEEE--eCCCcEEEEeCCc
Q 009993 325 SHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT-GPVNSLAF--EFPWLVSA--AGDGKLSLIDVRK 393 (520)
Q Consensus 325 s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~-~~v~~l~~--~~~~l~s~--s~dg~i~vwd~~~ 393 (520)
..++.+..+++.||.|+.|++... +.+.....|. .++..+.. +...++.+ |.|..++.|++..
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~~p~------k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNIKPN------KVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccceeEEeccCCceeeeccccC------ceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 335568889999999999998877 4455555555 33333333 23455555 6666666666654
No 385
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=0.089 Score=50.97 Aligned_cols=139 Identities=17% Similarity=0.162 Sum_probs=91.7
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEeCCCCc-eEEEEecCCC-------EEEEEeCCCcEEEEEcccCcceeeeccCCcccc
Q 009993 157 LFTSGYDSIVRMWHLEDGFSIASSKPLGC-TIRAVAADKK-------LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQN 228 (520)
Q Consensus 157 l~sgs~dg~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~-------~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 228 (520)
|.++.....++--|++.|+.+..+.-+.. ++..+.|+.+ .-+.|-.|..|.-||.+-........
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~------- 421 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV------- 421 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee-------
Confidence 34555556678889999999988877665 5556655432 34557778889999975321110000
Q ss_pred ceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEE-ee-eccCEEEEe--eCCCEEEEEcCCeEEEEECC
Q 009993 229 TQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKV-LR-HSDWVYGLA--PHDTTVASTSGSDVYIWDTN 303 (520)
Q Consensus 229 ~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~-~~~~v~~~~--~~~~~l~~~~d~~i~iwd~~ 303 (520)
....-........|++- ...++++||.+|-|++||- .+...++ ++ ...+|..+. .+|+++++.++..+.+.++.
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred eeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 00001112344556666 6689999999999999997 4433333 33 677888776 89999999999998888764
No 386
>PHA03098 kelch-like protein; Provisional
Probab=96.16 E-value=0.47 Score=48.81 Aligned_cols=183 Identities=11% Similarity=0.021 Sum_probs=90.5
Q ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEE--eCCCCceEEEEecCCCEEEEEeCCC-----cEEEEEcccCcceee
Q 009993 153 SAKLLFTSGYDS------IVRMWHLEDGFSIAS--SKPLGCTIRAVAADKKLLVAGGTDG-----FIHCWRAVEVLPHLF 219 (520)
Q Consensus 153 ~~~~l~sgs~dg------~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~sg~~dg-----~i~vwd~~~~~~~~~ 219 (520)
++.+++.|+.++ .+..||..+++-... +............++..++.|+.++ .+..||..+..-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-- 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWR-- 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCcee--
Confidence 566777777543 467788776644221 1111111222335677778888653 3566776554211
Q ss_pred eccCCccccceEEeccCCCCeEEEEEcCCEEEEEecC------CeEEEEECCCCcEEEEeeec---cCEEEEeeCCCEEE
Q 009993 220 DISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD------MTVRVWDRALLKCLKVLRHS---DWVYGLAPHDTTVA 290 (520)
Q Consensus 220 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~l~ 290 (520)
....+............++...+.|+.+ ..+..||..+.+-...-..+ .....+..++.+++
T Consensus 372 ---------~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv 442 (534)
T PHA03098 372 ---------EEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYV 442 (534)
T ss_pred ---------eCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEE
Confidence 1111111111112233466666777632 45888998765433221111 11122335666666
Q ss_pred EEc-C--------CeEEEEECCCCeeeEEeeccc-ccceEEEEecCCCCEEEEEeCC-----CeEEEEEcccC
Q 009993 291 STS-G--------SDVYIWDTNSGCLLTVVNGAH-VGNTKSLARSHTGDFLFTGGED-----GAIHMYEIIND 348 (520)
Q Consensus 291 ~~~-d--------~~i~iwd~~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~tg~~d-----g~i~iwd~~~~ 348 (520)
.|+ + ..+.+||+.+++-...-.... ......+.+ ++.+++.|+.+ +.+.+||..+.
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 665 2 138889988764322111011 111112222 66777777664 46888887765
No 387
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.05 E-value=1.1 Score=46.16 Aligned_cols=69 Identities=14% Similarity=0.081 Sum_probs=39.4
Q ss_pred ccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEE
Q 009993 316 VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSL 388 (520)
Q Consensus 316 ~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~v 388 (520)
...+..+.|.+++.++ ++..++...+|.+.-..... ....-.....++..|+-++..++....+|.+.+
T Consensus 496 ~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~---~~~~~~n~~~~v~~vaa~~~~iyv~~~~g~~~l 564 (591)
T PRK13616 496 GDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNS---DALPSRNLSAPVVAVAASPSTVYVTDARAVLQL 564 (591)
T ss_pred CCccccceEecCCEEE-EEecCCCCceEEEecCCccc---cccCCCCccCceEEEecCCceEEEEcCCceEEe
Confidence 3346788999888854 55555555556554332111 110111235678888887777777777774433
No 388
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.04 E-value=2.6 Score=44.85 Aligned_cols=68 Identities=19% Similarity=0.074 Sum_probs=48.2
Q ss_pred cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEE-------------EEe----eCCCEEEEEc-----------CCeE
Q 009993 246 DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVY-------------GLA----PHDTTVASTS-----------GSDV 297 (520)
Q Consensus 246 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~-------------~~~----~~~~~l~~~~-----------d~~i 297 (520)
.++.++.++.|+.+.-.|.++|+....+...+.|. .+. ..+..+++++ +|.|
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 44688999999999999999999987765333221 011 1233444442 4779
Q ss_pred EEEECCCCeeeEEeec
Q 009993 298 YIWDTNSGCLLTVVNG 313 (520)
Q Consensus 298 ~iwd~~~~~~~~~~~~ 313 (520)
+-+|.++|+.+..+..
T Consensus 339 ~A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 339 RAFDVNTGALVWAWDP 354 (764)
T ss_pred EEEECCCCcEeeEEec
Confidence 9999999999988864
No 389
>PHA03098 kelch-like protein; Provisional
Probab=96.02 E-value=0.26 Score=50.72 Aligned_cols=186 Identities=11% Similarity=0.059 Sum_probs=91.5
Q ss_pred EecCCCEEEEEeCCC------cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecC-----Ce
Q 009993 190 VAADKKLLVAGGTDG------FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD-----MT 258 (520)
Q Consensus 190 ~~~~~~~l~sg~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-----g~ 258 (520)
+..++..++.|+.++ .+..||..+..... ...+.........+..++..++.|+.+ ..
T Consensus 291 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-----------~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~ 359 (534)
T PHA03098 291 VVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-----------VPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNT 359 (534)
T ss_pred EEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-----------CCCCCcccccceEEEECCEEEEEeCCCCCEecce
Confidence 346677777777643 46667765543211 001111112223344477777777765 35
Q ss_pred EEEEECCCCcEEEEee--eccC-EEEEeeCCCEEEEEc-C------CeEEEEECCCCeeeE--EeecccccceEEEEecC
Q 009993 259 VRVWDRALLKCLKVLR--HSDW-VYGLAPHDTTVASTS-G------SDVYIWDTNSGCLLT--VVNGAHVGNTKSLARSH 326 (520)
Q Consensus 259 v~iwd~~~~~~~~~~~--~~~~-v~~~~~~~~~l~~~~-d------~~i~iwd~~~~~~~~--~~~~~~~~~i~~l~~s~ 326 (520)
+..||..+.+-...-. .+.. ......++++.+.|+ + ..+..||+.+++-.. .+..+..+ .+++. .
T Consensus 360 v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~--~~~~~-~ 436 (534)
T PHA03098 360 VESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG--GCAIY-H 436 (534)
T ss_pred EEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC--ceEEE-E
Confidence 7788887654332211 1111 112235666666665 2 358899988754221 11111111 12222 2
Q ss_pred CCCEEEEEeCCC--------eEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCC-----CcEEEEeCCc
Q 009993 327 TGDFLFTGGEDG--------AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGD-----GKLSLIDVRK 393 (520)
Q Consensus 327 ~~~~l~tg~~dg--------~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~ 393 (520)
++.+++.|+.++ .+.+||..+..- ..+..+.........+.+++..++.|+.+ ..|.+||..+
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W----~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKW----TELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCce----eeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 566666676432 378888876521 11111111111223344566666777654 4677888765
No 390
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.01 E-value=0.94 Score=43.64 Aligned_cols=232 Identities=12% Similarity=0.047 Sum_probs=102.2
Q ss_pred CCEEEEEe-cCCeEEEEECCC----CcEEEEee----ec-cCE----EEEe-eCCCEEEEEc---C----CeEEEEECCC
Q 009993 247 LTRIYSGS-WDMTVRVWDRAL----LKCLKVLR----HS-DWV----YGLA-PHDTTVASTS---G----SDVYIWDTNS 304 (520)
Q Consensus 247 ~~~l~s~s-~dg~v~iwd~~~----~~~~~~~~----~~-~~v----~~~~-~~~~~l~~~~---d----~~i~iwd~~~ 304 (520)
.++|+..+ ..+.|+|.|+.+ .+..+++. +. ..+ +.-+ ++|+.++++- + |.+.++|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 46677766 668899999873 45555554 11 111 1112 6787877753 2 5699999998
Q ss_pred CeeeEEeeccc--ccceEEEEecCCCCEEEEEeC--------------------CCeEEEEEcccCccccceeeeeeecC
Q 009993 305 GCLLTVVNGAH--VGNTKSLARSHTGDFLFTGGE--------------------DGAIHMYEIINDCTEANVLLVATWIP 362 (520)
Q Consensus 305 ~~~~~~~~~~~--~~~i~~l~~s~~~~~l~tg~~--------------------dg~i~iwd~~~~~~~~~~~~~~~~~~ 362 (520)
.+......... ..--+.+-+.|..+.++|... ..++++||+.+. +.++++.-
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r------~~~Q~idL 240 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR------KLLQTIDL 240 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT------EEEEEEES
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC------cEeeEEec
Confidence 88777765422 334456778888888887642 457999999998 55655543
Q ss_pred C--cCCEEEEEe--cC--C-EEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCc-------cc---ccCccee
Q 009993 363 H--TGPVNSLAF--EF--P-WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQ-------RM---LHGFECN 425 (520)
Q Consensus 363 h--~~~v~~l~~--~~--~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~ 425 (520)
- ...+..|.| +| . -++.+.-.++|..|--.... .+ ....+..+.... .+ +.....-
T Consensus 241 g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g---~W----~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~L 313 (461)
T PF05694_consen 241 GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDG---EW----AAEKVIDIPAKKVEGWILPEMLKPFGAVPPL 313 (461)
T ss_dssp -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETT---EE----EEEEEEEE--EE--SS---GGGGGG-EE---
T ss_pred CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCC---Ce----eeeEEEECCCcccCcccccccccccccCCCc
Confidence 2 234566777 44 2 33344445555555432110 00 011111111110 11 1111222
Q ss_pred eE--EEEecCCE-EEEecCCCeEEEEeCCchHhHHHHhhhhc-cc--------ccchhhhhccceeeeccCCCccccc
Q 009993 426 LL--SVDIGADR-IVCGGEEGIVRIWNFSQAFEIERRARALR-GI--------RLENRMRRRKLQTEMSSKGGRTDQC 491 (520)
Q Consensus 426 v~--~~~~~~~~-l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~s~~g~~~~~~ 491 (520)
++ .++.+.++ .++.=.+|.||.||+++....+...+..- +. ...++....++-+..|.||+|+-.+
T Consensus 314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 33 35566664 45555799999999998766543322111 10 0112333446788999999998764
No 391
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.00 E-value=1.7 Score=45.87 Aligned_cols=143 Identities=15% Similarity=0.112 Sum_probs=98.4
Q ss_pred CCEEEEEec----------CCeEEEEECCCCcEEEEe---eeccCEEEEeeCCCEEEEEcCCeEEEEECCCCeeeEEeec
Q 009993 247 LTRIYSGSW----------DMTVRVWDRALLKCLKVL---RHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNG 313 (520)
Q Consensus 247 ~~~l~s~s~----------dg~v~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~ 313 (520)
+.++++|.. .|.|.++.+.....+... .-.+.+.++..-+..+++|-+..|++|+..+.+.++.-.
T Consensus 787 ~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~In~~vrLye~t~~~eLr~e~- 865 (1096)
T KOG1897|consen 787 NTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGINQSVRLYEWTTERELRIEC- 865 (1096)
T ss_pred ceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEecCcEEEEEEccccceehhhh-
Confidence 356666642 477888877764333333 367778888844445555668899999999886665543
Q ss_pred ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe-cCCEEEEEeCCCcEEEEeCC
Q 009993 314 AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF-EFPWLVSAAGDGKLSLIDVR 392 (520)
Q Consensus 314 ~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~vwd~~ 392 (520)
.+..++..+...-.|+.+++|..=+.+.+-..+..+- +...+. -.-+..+.+++.+ +.+.++.+..+|.+.+-...
T Consensus 866 ~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg--~f~evA-rD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 866 NISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEG--NFEEVA-RDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred cccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCC--ceEEee-hhhCccceeeEEEecCceEEeecccccEEEEEec
Confidence 5888899999999999999999888887766655421 111111 1235567777777 66777788888988887776
Q ss_pred c
Q 009993 393 K 393 (520)
Q Consensus 393 ~ 393 (520)
+
T Consensus 943 ~ 943 (1096)
T KOG1897|consen 943 S 943 (1096)
T ss_pred C
Confidence 4
No 392
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.96 E-value=0.014 Score=50.16 Aligned_cols=102 Identities=13% Similarity=0.121 Sum_probs=63.3
Q ss_pred cCCEEEEEecCCeEEEEECCCCcEEEEe--eeccCEEEEee---CCCEEEEEc-CCeEEEEECCCCeeeEEeecccc-cc
Q 009993 246 DLTRIYSGSWDMTVRVWDRALLKCLKVL--RHSDWVYGLAP---HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHV-GN 318 (520)
Q Consensus 246 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~---~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~-~~ 318 (520)
-+..++.|+.+|.|.+|+.......... .....|.++-| ++.+..++. +|.|+.|++.-++.+-... .|. .+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g-~h~~~~ 147 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG-QHNFES 147 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeec-cccCCC
Confidence 4567899999999999987621111111 12233333333 333555555 9999999998887776654 465 45
Q ss_pred eEEEEecCCCCEEEEE--eCCCeEEEEEcccC
Q 009993 319 TKSLARSHTGDFLFTG--GEDGAIHMYEIIND 348 (520)
Q Consensus 319 i~~l~~s~~~~~l~tg--~~dg~i~iwd~~~~ 348 (520)
+.....+..+.+++.+ |.|..++.|++..-
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 5555555556666666 66677777776544
No 393
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.93 E-value=0.026 Score=35.72 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=28.9
Q ss_pred cccceEEEEecCCCCEEEEEeCCCeEEEEEcc
Q 009993 315 HVGNTKSLARSHTGDFLFTGGEDGAIHMYEII 346 (520)
Q Consensus 315 ~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~ 346 (520)
....|..++|+|..+++|.|+.+|.|.+|.+.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34579999999999999999999999999983
No 394
>PHA02790 Kelch-like protein; Provisional
Probab=95.78 E-value=0.64 Score=46.96 Aligned_cols=181 Identities=12% Similarity=0.022 Sum_probs=88.9
Q ss_pred CCCEEEEEeCCC-----eEEEEECCCCcEEE--EeCCCCceEEEEecCCCEEEEEeCCC--cEEEEEcccCcceeeeccC
Q 009993 153 SAKLLFTSGYDS-----IVRMWHLEDGFSIA--SSKPLGCTIRAVAADKKLLVAGGTDG--FIHCWRAVEVLPHLFDISG 223 (520)
Q Consensus 153 ~~~~l~sgs~dg-----~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~sg~~dg--~i~vwd~~~~~~~~~~~~~ 223 (520)
++.+++.|+.++ ++..||..++.-.. .+............++...+.|+.++ .+..||..++.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~-------- 342 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAA-------- 342 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCe--------
Confidence 456667777543 46678877654322 22111111222336777778887643 46667754432
Q ss_pred CccccceEEeccCCCCeEEEEEcCCEEEEEecCC---eEEEEECCCCcEEEEee--ecc-CEEEEeeCCCEEEEEcCCeE
Q 009993 224 SEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDM---TVRVWDRALLKCLKVLR--HSD-WVYGLAPHDTTVASTSGSDV 297 (520)
Q Consensus 224 ~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg---~v~iwd~~~~~~~~~~~--~~~-~v~~~~~~~~~l~~~~d~~i 297 (520)
......+............++...+.|+.++ ++..||.++.+-...-. .+. ....+..++.+.+.| |.+
T Consensus 343 ---W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~ 417 (480)
T PHA02790 343 ---WVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNA 417 (480)
T ss_pred ---EEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--Cce
Confidence 1111111111122233344777777777653 47788877654332211 111 112223566666655 356
Q ss_pred EEEECCCCeeeEEeeccc-ccceEEEEecCCCCEEEEEeCC-----CeEEEEEcccC
Q 009993 298 YIWDTNSGCLLTVVNGAH-VGNTKSLARSHTGDFLFTGGED-----GAIHMYEIIND 348 (520)
Q Consensus 298 ~iwd~~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~tg~~d-----g~i~iwd~~~~ 348 (520)
.+||+++++=...-...+ .... +++. -++++.+.|+.+ ..+..||..++
T Consensus 418 e~ydp~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 418 EFYCESSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred EEecCCCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 778887654221111011 1112 2222 267777777754 34667776655
No 395
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.6 Score=39.84 Aligned_cols=168 Identities=19% Similarity=0.162 Sum_probs=98.0
Q ss_pred CCCEEEEEeC--CCeEEEEECCCCcEEEEeCCCCceEE--EEecCCCEEEE-EeCCCcEEEEEcccCcceeeeccCCccc
Q 009993 153 SAKLLFTSGY--DSIVRMWHLEDGFSIASSKPLGCTIR--AVAADKKLLVA-GGTDGFIHCWRAVEVLPHLFDISGSEKQ 227 (520)
Q Consensus 153 ~~~~l~sgs~--dg~v~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~l~s-g~~dg~i~vwd~~~~~~~~~~~~~~~~~ 227 (520)
+|.++.+.+. ...|++||+.+|+.+.+..-....+. .+..-++.+.. --.+|.-..+|..+-+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~------------ 122 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLE------------ 122 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhh------------
Confidence 4566666654 34699999999988765432211111 11122333332 3346666677765532
Q ss_pred cceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee---eccCEEEEe----eCCCEEEEEc-CCeEEE
Q 009993 228 NTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLA----PHDTTVASTS-GSDVYI 299 (520)
Q Consensus 228 ~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~----~~~~~l~~~~-d~~i~i 299 (520)
+... ....+.=..++.++..|+.++...+++.-|.++.....++. ...+|..+. -+|...+-.- ...|..
T Consensus 123 -~lg~-~~y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~r 200 (262)
T COG3823 123 -ELGR-FSYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIAR 200 (262)
T ss_pred -hhcc-cccCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEE
Confidence 1111 12345556777788778888777888888887766655554 333444333 4555554444 566777
Q ss_pred EECCCCeeeEEee-----------cccccceEEEEecCCCC-EEEEE
Q 009993 300 WDTNSGCLLTVVN-----------GAHVGNTKSLARSHTGD-FLFTG 334 (520)
Q Consensus 300 wd~~~~~~~~~~~-----------~~~~~~i~~l~~s~~~~-~l~tg 334 (520)
.|+.+|+.+..+. ..+..-.+.+++.|+++ +++||
T Consensus 201 I~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 201 IDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 7777777665543 12444677889998874 45555
No 396
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.59 E-value=2.7 Score=41.62 Aligned_cols=232 Identities=16% Similarity=0.109 Sum_probs=119.7
Q ss_pred ccEEEEEEccCCCEEEEE-eCC----CeEEEEECCCCcEEEEe-CCCCceEEEEecCCCEEEEEeCCC-----------c
Q 009993 143 EAVLTVFVLASAKLLFTS-GYD----SIVRMWHLEDGFSIASS-KPLGCTIRAVAADKKLLVAGGTDG-----------F 205 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~sg-s~d----g~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~l~sg~~dg-----------~ 205 (520)
-.+....++|+|+++|-+ +.. ..++++|+++|+.+... ......-..+.++++.|+....+. .
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 344467899999988854 333 35999999999776532 222222267778877766555433 2
Q ss_pred EEEEEcccCcceeeeccCCccccceEEeccCCCC--eEEEEE--cCCEEEEEecC----CeEEEEECCCC-----cEEEE
Q 009993 206 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGP--ITSLAL--DLTRIYSGSWD----MTVRVWDRALL-----KCLKV 272 (520)
Q Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~--~~~~l~s~s~d----g~v~iwd~~~~-----~~~~~ 272 (520)
|..|++.+... .....+...... ...+.. ++++++..+.. ..+.+.|...+ .....
T Consensus 204 v~~~~~gt~~~-----------~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l 272 (414)
T PF02897_consen 204 VYRHKLGTPQS-----------EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL 272 (414)
T ss_dssp EEEEETTS-GG-----------G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE
T ss_pred EEEEECCCChH-----------hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE
Confidence 66777655421 112233333333 344555 77776644332 35788888764 33333
Q ss_pred eeeccCE-EEEeeCCC-EEEEEc----CCeEEEEECCCCee---eEEeeccccc--ceEEEEecCCCCEEE-EEeCCC--
Q 009993 273 LRHSDWV-YGLAPHDT-TVASTS----GSDVYIWDTNSGCL---LTVVNGAHVG--NTKSLARSHTGDFLF-TGGEDG-- 338 (520)
Q Consensus 273 ~~~~~~v-~~~~~~~~-~l~~~~----d~~i~iwd~~~~~~---~~~~~~~~~~--~i~~l~~s~~~~~l~-tg~~dg-- 338 (520)
......+ ..+...+. +++.+. .+.|.-.++..... ...+. .+.. .+..+.. .+++|+ ....++
T Consensus 273 ~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~-~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~ 349 (414)
T PF02897_consen 273 SPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI-PEDEDVSLEDVSL--FKDYLVLSYRENGSS 349 (414)
T ss_dssp EESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEE--ETTEEEEEEEETTEE
T ss_pred eCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc-CCCCceeEEEEEE--ECCEEEEEEEECCcc
Confidence 3333333 44443344 444443 25677788877652 22333 3444 3444444 344444 444554
Q ss_pred eEEEEEcc-cCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeC---CCcEEEEeCCcc
Q 009993 339 AIHMYEII-NDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAG---DGKLSLIDVRKL 394 (520)
Q Consensus 339 ~i~iwd~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~---dg~i~vwd~~~~ 394 (520)
.|+++++. +. ........-.+.|..+..++ .+.++.+. -+++..||+.++
T Consensus 350 ~l~v~~~~~~~------~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 350 RLRVYDLDDGK------ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp EEEEEETT-TE------EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEEEECCCCc------EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 48888888 33 12222222234455555432 23333332 356777777764
No 397
>PHA02790 Kelch-like protein; Provisional
Probab=95.58 E-value=0.55 Score=47.40 Aligned_cols=143 Identities=7% Similarity=-0.039 Sum_probs=73.7
Q ss_pred EEEcCCEEEEEecC--CeEEEEECCCCcEEEEee--ecc-CEEEEeeCCCEEEEEc-C---CeEEEEECCCCeeeEEeec
Q 009993 243 LALDLTRIYSGSWD--MTVRVWDRALLKCLKVLR--HSD-WVYGLAPHDTTVASTS-G---SDVYIWDTNSGCLLTVVNG 313 (520)
Q Consensus 243 l~~~~~~l~s~s~d--g~v~iwd~~~~~~~~~~~--~~~-~v~~~~~~~~~l~~~~-d---~~i~iwd~~~~~~~~~~~~ 313 (520)
+..++...+.|+.+ .++..||..+.+-...-. ... .......++++.+.|+ + ..+..||+++.+-...-..
T Consensus 315 v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 315 VPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred EEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence 34477777777754 357888876553322222 111 1122336777777766 4 3477899877643221110
Q ss_pred ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCC-----CcEEE
Q 009993 314 AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGD-----GKLSL 388 (520)
Q Consensus 314 ~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-----g~i~v 388 (520)
.....-.+++ .-++.+.+.|+ .+.+||..++. +..+..+.........+..++...+.||.+ ..|..
T Consensus 395 ~~~r~~~~~~-~~~~~IYv~GG---~~e~ydp~~~~----W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~ 466 (480)
T PHA02790 395 YYPHYKSCAL-VFGRRLFLVGR---NAEFYCESSNT----WTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEV 466 (480)
T ss_pred CCccccceEE-EECCEEEEECC---ceEEecCCCCc----EeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEE
Confidence 1111111222 23566666663 56788886652 122222322233344455677777777754 34667
Q ss_pred EeCCc
Q 009993 389 IDVRK 393 (520)
Q Consensus 389 wd~~~ 393 (520)
||..+
T Consensus 467 Yd~~~ 471 (480)
T PHA02790 467 YNNRT 471 (480)
T ss_pred EECCC
Confidence 77665
No 398
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.46 E-value=2.6 Score=40.63 Aligned_cols=184 Identities=11% Similarity=0.050 Sum_probs=91.5
Q ss_pred ccCCCEEEEE---------eCCCeEEEEECCCCcEEEEeCC-CCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeee
Q 009993 151 LASAKLLFTS---------GYDSIVRMWHLEDGFSIASSKP-LGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD 220 (520)
Q Consensus 151 ~~~~~~l~sg---------s~dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 220 (520)
|||+++++.. +..+.+.|+|+++++....... ....-..++|+|+.++... ++.|.+++..++......
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT 79 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLT 79 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEec
Confidence 5778777764 2356789999999765544332 3445567889999998876 578999987666332222
Q ss_pred ccCCccccceEEeccC---------CCCeEEEEE--cCCEEEEEecC-CeEEEEEC---CCCcEEEEeeeccCEEEEe-e
Q 009993 221 ISGSEKQNTQFRLWEH---------EGPITSLAL--DLTRIYSGSWD-MTVRVWDR---ALLKCLKVLRHSDWVYGLA-P 284 (520)
Q Consensus 221 ~~~~~~~~~~~~~~~h---------~~~v~~l~~--~~~~l~s~s~d-g~v~iwd~---~~~~~~~~~~~~~~v~~~~-~ 284 (520)
..+.. .+ +.|- -+.-..+-| |+++|+....| ..|+.+.+ ..... .-..+..+. |
T Consensus 80 ~dg~~---~i--~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~-----~yp~~~~~~YP 149 (353)
T PF00930_consen 80 TDGEP---GI--YNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS-----QYPEVESIRYP 149 (353)
T ss_dssp S--TT---TE--EESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE-----SS-EEEEEE--
T ss_pred cccce---eE--EcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc-----cCCcccccccC
Confidence 22200 00 0000 111234555 66666655443 33333322 11110 000122222 1
Q ss_pred C-CCEEEEEcCCeEEEEECCCCeeeEE-ee---cccccceEEEEecCCCCEEEE--EeCCC---eEEEEEcccC
Q 009993 285 H-DTTVASTSGSDVYIWDTNSGCLLTV-VN---GAHVGNTKSLARSHTGDFLFT--GGEDG---AIHMYEIIND 348 (520)
Q Consensus 285 ~-~~~l~~~~d~~i~iwd~~~~~~~~~-~~---~~~~~~i~~l~~s~~~~~l~t--g~~dg---~i~iwd~~~~ 348 (520)
. |..- ..-.+.++|+.+++.... .. ......+..+.|.+++..|+. ...+. .+.++|..++
T Consensus 150 k~G~~n---p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg 220 (353)
T PF00930_consen 150 KAGDPN---PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTG 220 (353)
T ss_dssp BTTS------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTT
T ss_pred CCCCcC---CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCC
Confidence 0 0000 012477889988865322 11 123556889999999984443 33332 3666777665
No 399
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.25 E-value=0.87 Score=44.83 Aligned_cols=179 Identities=13% Similarity=0.025 Sum_probs=98.5
Q ss_pred cccEEEEEEccCCCEEEEEe---CC-CeEEEEECCCCcEEEEe--CCCCceEEEEecCCCEEEE-EeCCCcEEEE--Ecc
Q 009993 142 TEAVLTVFVLASAKLLFTSG---YD-SIVRMWHLEDGFSIASS--KPLGCTIRAVAADKKLLVA-GGTDGFIHCW--RAV 212 (520)
Q Consensus 142 ~~~V~~l~~~~~~~~l~sgs---~d-g~v~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~l~s-g~~dg~i~vw--d~~ 212 (520)
...+..-+|+|++..++-.+ .. ..+.++++.+++..... .++ ...-.++|+|++|+. ...||...+| |+.
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~-~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN-NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCc-cCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 34555567888887655442 22 45889999887654433 333 334578899987765 4556665544 554
Q ss_pred cCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEe-cCC--eEEEEECCCCcEEEEee--eccCEEEEeeCCC
Q 009993 213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS-WDM--TVRVWDRALLKCLKVLR--HSDWVYGLAPHDT 287 (520)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s-~dg--~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~ 287 (520)
++. ........+... -.++.-+|++++-.+ ..| .|.+.|.+......... .....-.++|+|+
T Consensus 271 ~~~-----------~~~Lt~~~gi~~-~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~ 338 (425)
T COG0823 271 GKN-----------LPRLTNGFGINT-SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGD 338 (425)
T ss_pred CCc-----------ceecccCCcccc-CccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCC
Confidence 432 001111111111 122233787766554 344 46666776665433222 2222445569999
Q ss_pred EEEEEc--CCe--EEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEe
Q 009993 288 TVASTS--GSD--VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG 335 (520)
Q Consensus 288 ~l~~~~--d~~--i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~ 335 (520)
+++..+ +|. |.+.|+.++...+.+. +......-.+.|++..+...+
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt--~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRILT--STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEcc--ccccCCCCCcCCCCceEEEec
Confidence 998877 455 7777776665444432 333444556777777665443
No 400
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.06 E-value=3.4 Score=39.54 Aligned_cols=187 Identities=13% Similarity=0.089 Sum_probs=84.9
Q ss_pred EEccCCCEEEEEe-CCC--eEEEEECCCCcEEEEeCCC--CceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccC
Q 009993 149 FVLASAKLLFTSG-YDS--IVRMWHLEDGFSIASSKPL--GCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISG 223 (520)
Q Consensus 149 ~~~~~~~~l~sgs-~dg--~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~ 223 (520)
+|.++|+.|+-++ .|| .+.+-|+.+++..+-..+. ...-..++++++.++-...+..|.-.|+.+.+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~------ 115 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEER------ 115 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EE------
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEE------
Confidence 4677886555544 455 4666688888766544332 1112456677787766555667888888776431
Q ss_pred CccccceEEeccCCCCeEEEEE----cCCEEEE----------------------EecCCeEEEEECCCCcEEEEeeecc
Q 009993 224 SEKQNTQFRLWEHEGPITSLAL----DLTRIYS----------------------GSWDMTVRVWDRALLKCLKVLRHSD 277 (520)
Q Consensus 224 ~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s----------------------~s~dg~v~iwd~~~~~~~~~~~~~~ 277 (520)
.+..+ ....+-...| ++..++- +--...|.-.|+.+|+....+....
T Consensus 116 -----~vy~~--p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~ 188 (386)
T PF14583_consen 116 -----VVYEV--PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD 188 (386)
T ss_dssp -----EEEE----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS
T ss_pred -----EEEEC--CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc
Confidence 11111 1222211222 2222211 1112456667888888777777777
Q ss_pred CEEEEe---eCCCEEEEEcCC-----eEEEEECCC-CeeeEEeec-ccccceEEEEecCCCCEEEEE-----eCCCeEEE
Q 009993 278 WVYGLA---PHDTTVASTSGS-----DVYIWDTNS-GCLLTVVNG-AHVGNTKSLARSHTGDFLFTG-----GEDGAIHM 342 (520)
Q Consensus 278 ~v~~~~---~~~~~l~~~~d~-----~i~iwd~~~-~~~~~~~~~-~~~~~i~~l~~s~~~~~l~tg-----~~dg~i~i 342 (520)
++.-+. .++.+|+-|..| .-+||-+++ +...+.+.. .....+..=-|.|||..|.-- +.+..|.-
T Consensus 189 wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~ 268 (386)
T PF14583_consen 189 WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAG 268 (386)
T ss_dssp -EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEE
T ss_pred cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEe
Confidence 777665 455666666533 136665543 233333321 112233334588999866532 22445666
Q ss_pred EEcccC
Q 009993 343 YEIIND 348 (520)
Q Consensus 343 wd~~~~ 348 (520)
+|+.++
T Consensus 269 ~d~~t~ 274 (386)
T PF14583_consen 269 YDPDTG 274 (386)
T ss_dssp E-TTT-
T ss_pred eCCCCC
Confidence 777766
No 401
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.91 E-value=2.8 Score=37.97 Aligned_cols=190 Identities=9% Similarity=0.049 Sum_probs=118.5
Q ss_pred EEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCc
Q 009993 189 AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLK 268 (520)
Q Consensus 189 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~ 268 (520)
.+...+++.+.+..+.-+++.|+.+... .... .+....+--.++...|++.+.+..|.-+.+.|+.+.+
T Consensus 91 Dv~vse~yvyvad~ssGL~IvDIS~P~s----------P~~~-~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdps 159 (370)
T COG5276 91 DVRVSEEYVYVADWSSGLRIVDISTPDS----------PTLI-GFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred eeEecccEEEEEcCCCceEEEeccCCCC----------ccee-ccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCC
Confidence 3445678888888888899999977632 1111 1222235556677799999999977667788887654
Q ss_pred EEEE---eee-ccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeeccc-ccceEEEEecCCCCEEEEEeCCCeEEE
Q 009993 269 CLKV---LRH-SDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAH-VGNTKSLARSHTGDFLFTGGEDGAIHM 342 (520)
Q Consensus 269 ~~~~---~~~-~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~tg~~dg~i~i 342 (520)
.... ... ......+.-.|++-..+. |+.+.+.|+........+.... ...+.++..+++..+++... --+.+
T Consensus 160 sP~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvli 237 (370)
T COG5276 160 SPQLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLI 237 (370)
T ss_pred CceeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEE
Confidence 3322 222 222345666777777776 9999999998765444332212 33678888887766666543 33667
Q ss_pred EEcccCccccceeeeeeecC-CcCCEEEEEecCCEEEEEeCCCcEEEEeCCcc
Q 009993 343 YEIINDCTEANVLLVATWIP-HTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~ 394 (520)
-|..+...+ ........ ....++.+..++++...+..+.-+-+-|+.++
T Consensus 238 vd~s~~ssp---~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 238 VDVSGPSSP---TVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred EecCCCCCc---eEeeccccCCcccccceecccceeeeeccccCceeEeccCC
Confidence 777666321 11111111 11233445667788888888888888888764
No 402
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.91 E-value=0.37 Score=46.91 Aligned_cols=135 Identities=13% Similarity=0.105 Sum_probs=82.7
Q ss_pred EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---------cCCEEEEEecCCeEEEEECCC
Q 009993 196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---------DLTRIYSGSWDMTVRVWDRAL 266 (520)
Q Consensus 196 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---------~~~~l~s~s~dg~v~iwd~~~ 266 (520)
++.++.....++-.|++.|. .+....-|.. |+-+.+ ++..-+.|-.|..|.-||.+-
T Consensus 348 il~~~~~~~~l~klDIE~GK-------------IVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv 413 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGK-------------IVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRV 413 (644)
T ss_pred EeeCCCCcCcceeeecccce-------------eeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccc
Confidence 34455555667777877763 2222222333 443443 122345566778899999873
Q ss_pred CcE--EEEee-----eccCEEEEe-eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCC
Q 009993 267 LKC--LKVLR-----HSDWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED 337 (520)
Q Consensus 267 ~~~--~~~~~-----~~~~v~~~~-~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d 337 (520)
... +...+ ......|+. ....++++|+ +|.|++||. .+..-++...+-..+|..+..+.+|++|+..+ +
T Consensus 414 ~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~ 491 (644)
T KOG2395|consen 414 QGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-K 491 (644)
T ss_pred cCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-c
Confidence 221 11111 333445555 4556777777 999999998 55554444457888999999999999887654 4
Q ss_pred CeEEEEEcc
Q 009993 338 GAIHMYEII 346 (520)
Q Consensus 338 g~i~iwd~~ 346 (520)
..+.+.++.
T Consensus 492 tyLlLi~t~ 500 (644)
T KOG2395|consen 492 TYLLLIDTL 500 (644)
T ss_pred cEEEEEEEe
Confidence 556666653
No 403
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.63 E-value=2.1 Score=43.99 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=68.4
Q ss_pred eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEec--CCCCEEEEEeCCCeEEEEEcc-----cCcccccee
Q 009993 284 PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARS--HTGDFLFTGGEDGAIHMYEII-----NDCTEANVL 355 (520)
Q Consensus 284 ~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s--~~~~~l~tg~~dg~i~iwd~~-----~~~~~~~~~ 355 (520)
..++..++.+ ...+.|||.+.+.....-.-...+.|..+.|. |+++.+++.+..+.|.+|.-. +..+.....
T Consensus 39 s~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i 118 (631)
T PF12234_consen 39 SIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPI 118 (631)
T ss_pred ccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccccee
Confidence 3444444444 57799999999875544432357889999885 688888888899999988532 221111111
Q ss_pred eeeeecCCc-CCEEEEEecC-CEEEEEeCCCcEEEEeCC
Q 009993 356 LVATWIPHT-GPVNSLAFEF-PWLVSAAGDGKLSLIDVR 392 (520)
Q Consensus 356 ~~~~~~~h~-~~v~~l~~~~-~~l~s~s~dg~i~vwd~~ 392 (520)
....+..|+ .+|.+..|-+ ..|++|+ ++.+.|+|-.
T Consensus 119 ~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 119 RKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDKW 156 (631)
T ss_pred EEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECCC
Confidence 112233444 5788999955 4566555 4568888754
No 404
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.45 E-value=4.5 Score=41.83 Aligned_cols=74 Identities=16% Similarity=0.020 Sum_probs=44.1
Q ss_pred ccceEEEEecCCCCEEEEEeCCCeEEEEEc---ccCccccceeeeeeecC-CcCCEEEEEecC-CEEEEEeCCCcEEEEe
Q 009993 316 VGNTKSLARSHTGDFLFTGGEDGAIHMYEI---INDCTEANVLLVATWIP-HTGPVNSLAFEF-PWLVSAAGDGKLSLID 390 (520)
Q Consensus 316 ~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~---~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~-~~l~s~s~dg~i~vwd 390 (520)
.+.|..+.|||||..++... +|.|++--+ ..+. ..+.....+.. -...+.++.|.+ ..|+.+..++...+|.
T Consensus 447 ~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~ 523 (591)
T PRK13616 447 PGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWY 523 (591)
T ss_pred CCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecccEEeecccCCccccceEecCCEEEEEecCCCCceEE
Confidence 45799999999999888765 577777332 2331 11111122222 233468899944 4566776666566666
Q ss_pred CC
Q 009993 391 VR 392 (520)
Q Consensus 391 ~~ 392 (520)
+.
T Consensus 524 v~ 525 (591)
T PRK13616 524 VN 525 (591)
T ss_pred Ee
Confidence 54
No 405
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.32 E-value=3.9 Score=36.94 Aligned_cols=221 Identities=12% Similarity=0.077 Sum_probs=119.0
Q ss_pred EEEEccCC-CEEEEEeCCCe-EEEEECCCCcEEEEe--------CCCCceEEEEecCCCEEEEEeCC-----CcEEEEEc
Q 009993 147 TVFVLASA-KLLFTSGYDSI-VRMWHLEDGFSIASS--------KPLGCTIRAVAADKKLLVAGGTD-----GFIHCWRA 211 (520)
Q Consensus 147 ~l~~~~~~-~~l~sgs~dg~-v~vwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~l~sg~~d-----g~i~vwd~ 211 (520)
.++|+|.. .-++.+-.-|+ ..++|....+...++ .+|. .++++|.+|+..-.| |.|-|||.
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG----vfs~dG~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG----VFSPDGRLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc----ccCCCCcEEEeecCCCCCCCceEEEEec
Confidence 56677753 34555555554 568888877655444 3343 578999999876544 77899998
Q ss_pred ccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec------------------CCeEEEEECCCCcEEE
Q 009993 212 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW------------------DMTVRVWDRALLKCLK 271 (520)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~------------------dg~v~iwd~~~~~~~~ 271 (520)
..+. ..+-.+..|.-.-..+.+ ||..++.+.. .-++.+.|..+++.+.
T Consensus 148 r~~f------------qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~lie 215 (366)
T COG3490 148 REGF------------QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE 215 (366)
T ss_pred cccc------------ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhh
Confidence 7552 234445566655566666 7777665542 1123334444554443
Q ss_pred Eee-----eccCEEEEe--eCCCEEEEEc-CCe-----EEEEECCCCeeeEEeec------ccccceEEEEecCCCCEEE
Q 009993 272 VLR-----HSDWVYGLA--PHDTTVASTS-GSD-----VYIWDTNSGCLLTVVNG------AHVGNTKSLARSHTGDFLF 332 (520)
Q Consensus 272 ~~~-----~~~~v~~~~--~~~~~l~~~~-d~~-----i~iwd~~~~~~~~~~~~------~~~~~i~~l~~s~~~~~l~ 332 (520)
... +...|..+. .++..++.+. .|. ..+=-...++.+..+.. .....|-+++.+.+..+++
T Consensus 216 kh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~ 295 (366)
T COG3490 216 KHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVA 295 (366)
T ss_pred hccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEE
Confidence 332 223344444 4555544443 221 11111122333332221 1233566777776666655
Q ss_pred EEe-CCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeC
Q 009993 333 TGG-EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDV 391 (520)
Q Consensus 333 tg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~ 391 (520)
..+ ..+...+||..++. .+.. ..-.....+.....-++..+.+|.+.++.-
T Consensus 296 lTSP~GN~~vi~da~tG~------vv~~--a~l~daaGva~~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 296 LTSPRGNRAVIWDAATGA------VVSE--AALPDAAGVAAAKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred EecCCCCeEEEEEcCCCc------EEec--ccccccccceeccCceEEecCCceEEeccc
Confidence 444 44567889999983 2221 111123344445566777778888888743
No 406
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.21 E-value=3.4 Score=35.86 Aligned_cols=154 Identities=20% Similarity=0.192 Sum_probs=82.4
Q ss_pred CCEEEEEcCCeEEEEECC--CCeeeEEeecccccceEEEEecCCCCEEEEEeCC---C---eEEEE-EcccCccccceee
Q 009993 286 DTTVASTSGSDVYIWDTN--SGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED---G---AIHMY-EIINDCTEANVLL 356 (520)
Q Consensus 286 ~~~l~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d---g---~i~iw-d~~~~~~~~~~~~ 356 (520)
+.+++++++..|.+|++. ..+....+. .-+.|..+.++..|++|+|-=++ . .+|+| +.+.......+..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 445555668899999988 335566664 56889999999999999985332 2 45664 2222110000001
Q ss_pred eeeecCC---------------------cCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecC
Q 009993 357 VATWIPH---------------------TGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVE 413 (520)
Q Consensus 357 ~~~~~~h---------------------~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 413 (520)
..+.|| ..++.+++.-| .-|+.|+ ++++.+|.+....... ....+..+.
T Consensus 107 -vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~------~~~~~lDFe 178 (215)
T PF14761_consen 107 -VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQS------EKFSFLDFE 178 (215)
T ss_pred -EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEec------ccccEEech
Confidence 011121 22344444432 2344444 4579999887643210 000111111
Q ss_pred CCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCC
Q 009993 414 PPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFS 451 (520)
Q Consensus 414 ~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~ 451 (520)
.............-+++.+.++|..+. -.+++..+.
T Consensus 179 -~~l~~~~~~~~p~~v~ic~~yiA~~s~-~ev~Vlkl~ 214 (215)
T PF14761_consen 179 -RSLIDHIDNFKPTQVAICEGYIAVMSD-LEVLVLKLE 214 (215)
T ss_pred -hhhhheecCceEEEEEEEeeEEEEecC-CEEEEEEEe
Confidence 111122333446677777888888885 467777653
No 407
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.17 E-value=2.3 Score=33.74 Aligned_cols=102 Identities=9% Similarity=0.085 Sum_probs=69.2
Q ss_pred EEcC--CEEEEEecCCeEEEEECCC--------CcEEEEeeeccCEEEEe-------eCCCEEEEEcCCeEEEEECCCCe
Q 009993 244 ALDL--TRIYSGSWDMTVRVWDRAL--------LKCLKVLRHSDWVYGLA-------PHDTTVASTSGSDVYIWDTNSGC 306 (520)
Q Consensus 244 ~~~~--~~l~s~s~dg~v~iwd~~~--------~~~~~~~~~~~~v~~~~-------~~~~~l~~~~d~~i~iwd~~~~~ 306 (520)
.||| ..|+.++.-|.|.|++... ...+..+.....|+++. .....|+.|+...+..||+....
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~ 84 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNS 84 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCc
Confidence 4444 3477888889999998663 34566677788888886 24678999999999999998877
Q ss_pred eeEEeecccccceEEEEecC----CCCEEEEEeCCCeEEEEEcccC
Q 009993 307 LLTVVNGAHVGNTKSLARSH----TGDFLFTGGEDGAIHMYEIIND 348 (520)
Q Consensus 307 ~~~~~~~~~~~~i~~l~~s~----~~~~l~tg~~dg~i~iwd~~~~ 348 (520)
.+.... -...++++.+-. ...++++| .+..|.-||....
T Consensus 85 d~Fyke--~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~ 127 (136)
T PF14781_consen 85 DLFYKE--VPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGN 127 (136)
T ss_pred hhhhhh--CccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCc
Confidence 664433 345677776632 23344444 4566777776554
No 408
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.02 E-value=6.6 Score=38.46 Aligned_cols=138 Identities=15% Similarity=0.182 Sum_probs=87.2
Q ss_pred CEEEEEecCCeEEEEECCCCc-----EEEEeeeccCEEEEe-------eCCCEEEEEcCCeEEEEECCC--Ce-------
Q 009993 248 TRIYSGSWDMTVRVWDRALLK-----CLKVLRHSDWVYGLA-------PHDTTVASTSGSDVYIWDTNS--GC------- 306 (520)
Q Consensus 248 ~~l~s~s~dg~v~iwd~~~~~-----~~~~~~~~~~v~~~~-------~~~~~l~~~~d~~i~iwd~~~--~~------- 306 (520)
+.+++||..|.++||+..... .+-..+...+|..+. .....|++-.-..+.+|.+.. |.
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~ 117 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQY 117 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEE
Confidence 679999999999999986443 334444778888877 234567776688888888732 11
Q ss_pred eeEEeecccc--cceEEEEecC----C-CCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEE
Q 009993 307 LLTVVNGAHV--GNTKSLARSH----T-GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWL 377 (520)
Q Consensus 307 ~~~~~~~~~~--~~i~~l~~s~----~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l 377 (520)
.+..+. .|. .....++.-| . ..++.+-+.||.+.+|+-+.. .....+.+ .--...+.|.+ +.+
T Consensus 118 ~L~~~y-eh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~------~f~~~lp~-~llPgPl~Y~~~tDsf 189 (418)
T PF14727_consen 118 QLELIY-EHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF------AFSRFLPD-FLLPGPLCYCPRTDSF 189 (418)
T ss_pred EEEEEE-EEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE------EEEEEcCC-CCCCcCeEEeecCCEE
Confidence 112221 232 2334444433 2 367888999999999997665 22222222 22233455644 688
Q ss_pred EEEeCCCcEEEEeCCc
Q 009993 378 VSAAGDGKLSLIDVRK 393 (520)
Q Consensus 378 ~s~s~dg~i~vwd~~~ 393 (520)
++++.+..+.-|....
T Consensus 190 vt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 190 VTASSSWTLECYKYQD 205 (418)
T ss_pred EEecCceeEEEecHHH
Confidence 8888888888887653
No 409
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.84 E-value=9.2 Score=39.50 Aligned_cols=33 Identities=21% Similarity=0.137 Sum_probs=28.4
Q ss_pred ccceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993 316 VGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND 348 (520)
Q Consensus 316 ~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~ 348 (520)
.+.+..+..||+.++|+--..+|.|.+-+.+..
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence 356778999999999999999999999887766
No 410
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.25 E-value=0.7 Score=40.94 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEE
Q 009993 238 GPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKV 272 (520)
Q Consensus 238 ~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 272 (520)
.++..+..+++++++.+.+|.+++||+.+++.+..
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~ 47 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLP 47 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccC
Confidence 45666777999999999999999999998876544
No 411
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.24 E-value=1.9 Score=42.45 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=59.4
Q ss_pred CeEEEEECCCCcEEEEee--eccCEEEEeeCCCEEEEEc--CC--eEEEEECCCCeeeEEeecccccceEEEEecCCCCE
Q 009993 257 MTVRVWDRALLKCLKVLR--HSDWVYGLAPHDTTVASTS--GS--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDF 330 (520)
Q Consensus 257 g~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~--d~--~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 330 (520)
..+.++|+.+++...... .....-.++|+|+.++.+. || .|++.|+..+...+ +.. ..+.-..-.|+|||+.
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~-~~gi~~~Ps~spdG~~ 295 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTN-GFGINTSPSWSPDGSK 295 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-ccc-CCccccCccCCCCCCE
Confidence 468999999887666655 4445556779999888777 44 48888988887444 432 2222336679999998
Q ss_pred EEEE-eCCCe--EEEEEcccC
Q 009993 331 LFTG-GEDGA--IHMYEIIND 348 (520)
Q Consensus 331 l~tg-~~dg~--i~iwd~~~~ 348 (520)
++-. +..|. |.+++....
T Consensus 296 ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 296 IVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred EEEEeCCCCCcceEEECCCCC
Confidence 7754 44555 445555544
No 412
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.01 E-value=9.8 Score=37.32 Aligned_cols=144 Identities=13% Similarity=0.095 Sum_probs=79.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCcE----EEEeCCCCceEEEEe-------cCCCEEEEEeCCCcEEEEEcccCcceeeecc
Q 009993 154 AKLLFTSGYDSIVRMWHLEDGFS----IASSKPLGCTIRAVA-------ADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS 222 (520)
Q Consensus 154 ~~~l~sgs~dg~v~vwd~~~~~~----~~~~~~~~~~v~~~~-------~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 222 (520)
...+++||.+|.++||+...+.. +.--..-..+|..+. .+...||+ -.-..+.+|.+.......
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~---- 111 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTV---- 111 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCc----
Confidence 46899999999999999854431 111112345666664 12233443 445677777763221100
Q ss_pred CCccccceEEeccCCCC--eEEEEE------c-CCEEEEEecCCeEEEEECCCCcEEEEee---eccCEEEEeeCCCEEE
Q 009993 223 GSEKQNTQFRLWEHEGP--ITSLAL------D-LTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLAPHDTTVA 290 (520)
Q Consensus 223 ~~~~~~~~~~~~~h~~~--v~~l~~------~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~l~ 290 (520)
.............|.-. ...++. . .+.+..-+.||.+.+++-+.......+. .++++.-+...+.++.
T Consensus 112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt 191 (418)
T PF14727_consen 112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVT 191 (418)
T ss_pred ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEE
Confidence 00001122223334322 222332 2 3678999999999999987665544444 5666655555555555
Q ss_pred EEcCCeEEEEEC
Q 009993 291 STSGSDVYIWDT 302 (520)
Q Consensus 291 ~~~d~~i~iwd~ 302 (520)
+.++..+..|..
T Consensus 192 ~sss~~l~~Yky 203 (418)
T PF14727_consen 192 ASSSWTLECYKY 203 (418)
T ss_pred ecCceeEEEecH
Confidence 555777777754
No 413
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.95 E-value=9.9 Score=37.21 Aligned_cols=72 Identities=14% Similarity=0.206 Sum_probs=48.0
Q ss_pred cceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCC----EEEEEe-------------cC---C-
Q 009993 317 GNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP----VNSLAF-------------EF---P- 375 (520)
Q Consensus 317 ~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~----v~~l~~-------------~~---~- 375 (520)
..+.+++.+|++.+.++...=|.|.++|+..+ ..++.++|-.+. +....- .+ .
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~------~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARG------IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCC------hhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence 35788999999998888877799999999888 445445443321 000000 00 1
Q ss_pred EEEEEeCCCcEEEEeCCcc
Q 009993 376 WLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 376 ~l~s~s~dg~i~vwd~~~~ 394 (520)
+++-+-.-|.|.||.++++
T Consensus 382 LvIyaprRg~lEvW~~~~g 400 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQG 400 (415)
T ss_pred EEEEeccCCeEEEEecCCC
Confidence 3445566899999999875
No 414
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=92.57 E-value=11 Score=36.76 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=10.9
Q ss_pred EEEecCCEEEEecCC
Q 009993 428 SVDIGADRIVCGGEE 442 (520)
Q Consensus 428 ~~~~~~~~l~sg~~D 442 (520)
++..++.+++.||..
T Consensus 339 av~~~~~iyv~GG~~ 353 (376)
T PRK14131 339 SVSWNNGVLLIGGET 353 (376)
T ss_pred EEEeCCEEEEEcCCC
Confidence 566777788888864
No 415
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.36 E-value=17 Score=38.54 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=27.7
Q ss_pred cccceEEEEecCC---CCEEEEEeCCCeEEEEEcccCc
Q 009993 315 HVGNTKSLARSHT---GDFLFTGGEDGAIHMYEIINDC 349 (520)
Q Consensus 315 ~~~~i~~l~~s~~---~~~l~tg~~dg~i~iwd~~~~~ 349 (520)
+...|..+.|+|. +..|++=..|+++++||+....
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 4557888889885 4788888899999999997654
No 416
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=92.32 E-value=11 Score=36.31 Aligned_cols=212 Identities=15% Similarity=0.066 Sum_probs=106.1
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC-C------------------CCceEEEEecCCCEEEEEeC
Q 009993 142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK-P------------------LGCTIRAVAADKKLLVAGGT 202 (520)
Q Consensus 142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~-~------------------~~~~v~~~~~~~~~l~sg~~ 202 (520)
...+....|+|+|+.++-.. ++.|.+++..++...+... + ......-++||+++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 56778889999999998886 6789999988775443221 2 11233457799998887655
Q ss_pred C-CcEEEEEcccCcceeeeccCCccccceEEeccCC---CCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEe-e-
Q 009993 203 D-GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE---GPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL-R- 274 (520)
Q Consensus 203 d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~- 274 (520)
| ..|..+.+... .... -.+..+.+ -|.-.. .-.+.++|+.+++....- .
T Consensus 121 d~~~v~~~~~~~~-------------------~~~~~~yp~~~~~~YPk~G~~np----~v~l~v~~~~~~~~~~~~~~~ 177 (353)
T PF00930_consen 121 DEREVPEYPLPDY-------------------SPPDSQYPEVESIRYPKAGDPNP----RVSLFVVDLASGKTTELDPPN 177 (353)
T ss_dssp E-TTS-EEEEEEE-------------------SSSTESS-EEEEEE--BTTS-------EEEEEEEESSSTCCCEE---H
T ss_pred CCcCCceEEeecc-------------------CCccccCCcccccccCCCCCcCC----ceEEEEEECCCCcEEEeeecc
Confidence 4 44544443211 0111 12333333 111111 013667888777653211 1
Q ss_pred ----eccCEEEEe--eCCCEEEE-Ec--C---CeEEEEECCCCeeeEEeecccccce---EEEEec-CCCC-EEEEEeCC
Q 009993 275 ----HSDWVYGLA--PHDTTVAS-TS--G---SDVYIWDTNSGCLLTVVNGAHVGNT---KSLARS-HTGD-FLFTGGED 337 (520)
Q Consensus 275 ----~~~~v~~~~--~~~~~l~~-~~--d---~~i~iwd~~~~~~~~~~~~~~~~~i---~~l~~s-~~~~-~l~tg~~d 337 (520)
....+..+. +++..++. -. + ..+.++|..++...........+.| ....+. +++. ++.....|
T Consensus 178 ~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~ 257 (353)
T PF00930_consen 178 SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD 257 (353)
T ss_dssp HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence 223344444 66763333 32 2 2377788887755433332222222 244554 5554 55556677
Q ss_pred CeEEEEEcccCccccceeeeeeecCCcCCEEE-EEecC--C-EEEEEeC
Q 009993 338 GAIHMYEIINDCTEANVLLVATWIPHTGPVNS-LAFEF--P-WLVSAAG 382 (520)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~--~-~l~s~s~ 382 (520)
|.-+||-+.... .....+....-.|+. +.+++ + ..+++..
T Consensus 258 G~~hly~~~~~~-----~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~ 301 (353)
T PF00930_consen 258 GYRHLYLYDLDG-----GKPRQLTSGDWEVTSILGWDEDNNRIYFTANG 301 (353)
T ss_dssp SSEEEEEEETTS-----SEEEESS-SSS-EEEEEEEECTSSEEEEEESS
T ss_pred CCcEEEEEcccc-----cceeccccCceeecccceEcCCCCEEEEEecC
Confidence 765555544432 123344445556655 44454 3 4455555
No 417
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.20 E-value=0.63 Score=28.59 Aligned_cols=31 Identities=16% Similarity=0.018 Sum_probs=26.0
Q ss_pred ccEEEEEEccCC---CEEEEEeCCCeEEEEECCC
Q 009993 143 EAVLTVFVLASA---KLLFTSGYDSIVRMWHLED 173 (520)
Q Consensus 143 ~~V~~l~~~~~~---~~l~sgs~dg~v~vwd~~~ 173 (520)
++|.++.|+|+. .+|+.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 578999999853 5888888889999999985
No 418
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.12 E-value=12 Score=36.34 Aligned_cols=95 Identities=17% Similarity=0.248 Sum_probs=51.1
Q ss_pred cCCeEEEEECCCCcEEEEeeec---c---CEEEEe-eCCCEEEEEc--CCeEEEEEC-CCCe----eeEEeecc------
Q 009993 255 WDMTVRVWDRALLKCLKVLRHS---D---WVYGLA-PHDTTVASTS--GSDVYIWDT-NSGC----LLTVVNGA------ 314 (520)
Q Consensus 255 ~dg~v~iwd~~~~~~~~~~~~~---~---~v~~~~-~~~~~l~~~~--d~~i~iwd~-~~~~----~~~~~~~~------ 314 (520)
...++.+||+.+.+.++++... . .|..+. |+..+-++++ .++|..|-. ..++ .+..+...
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 3468999999999999999732 1 222222 5555555544 666666544 4332 22222210
Q ss_pred ---c-------ccceEEEEecCCCCEEEEEe-CCCeEEEEEcccCc
Q 009993 315 ---H-------VGNTKSLARSHTGDFLFTGG-EDGAIHMYEIINDC 349 (520)
Q Consensus 315 ---~-------~~~i~~l~~s~~~~~l~tg~-~dg~i~iwd~~~~~ 349 (520)
- ..-|+.+..|.|.++|..++ .+|.|+.||+....
T Consensus 300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 0 24578999999999887654 58999999998874
No 419
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.96 E-value=14 Score=38.69 Aligned_cols=109 Identities=9% Similarity=0.045 Sum_probs=65.1
Q ss_pred CCCEEEEEeCCCeEEEEEcccCc--------------cccceeeeeeecCCcCCEEEEEec--C--CEEEEEeCCCcEEE
Q 009993 327 TGDFLFTGGEDGAIHMYEIINDC--------------TEANVLLVATWIPHTGPVNSLAFE--F--PWLVSAAGDGKLSL 388 (520)
Q Consensus 327 ~~~~l~tg~~dg~i~iwd~~~~~--------------~~~~~~~~~~~~~h~~~v~~l~~~--~--~~l~s~s~dg~i~v 388 (520)
+...|+.+.+||.|.+|.+..-. ....+++...+. -...++++++. . ++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 55688999999999999763210 001111222222 23478899986 3 57777777778888
Q ss_pred EeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC---C---EEEEecCCCeEEEEeC
Q 009993 389 IDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA---D---RIVCGGEEGIVRIWNF 450 (520)
Q Consensus 389 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~---~l~sg~~Dg~v~iwd~ 450 (520)
|-+........ ........|..+..++-.+. . .|++++-.|.+-+|++
T Consensus 192 Faf~l~~~r~~--------------~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFY--------------HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccc--------------cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 87654211100 00011145666655555433 2 7888999999999888
No 420
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.95 E-value=0.66 Score=28.48 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=26.1
Q ss_pred cceEEEEecCCC---CEEEEEeCCCeEEEEEcccC
Q 009993 317 GNTKSLARSHTG---DFLFTGGEDGAIHMYEIIND 348 (520)
Q Consensus 317 ~~i~~l~~s~~~---~~l~tg~~dg~i~iwd~~~~ 348 (520)
+.+.++.|+|.. ++|+.+-.-|.|.|+|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468899999854 48888777899999999964
No 421
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.77 E-value=11 Score=39.39 Aligned_cols=108 Identities=15% Similarity=0.146 Sum_probs=66.8
Q ss_pred CeEEEEE----cCCEEEEEecCCeEEEEECCC-------C-------------cEEEEeeeccCEEEEee----CCCEEE
Q 009993 239 PITSLAL----DLTRIYSGSWDMTVRVWDRAL-------L-------------KCLKVLRHSDWVYGLAP----HDTTVA 290 (520)
Q Consensus 239 ~v~~l~~----~~~~l~s~s~dg~v~iwd~~~-------~-------------~~~~~~~~~~~v~~~~~----~~~~l~ 290 (520)
.|+-|.. +...|+.+..||.|.+|.+++ . ++...+..+..+++++. ..+++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence 3455544 457799999999999997521 0 01122234556777773 366777
Q ss_pred EEc-CCeEEEEECCC--CeeeEEeecccccceEEEEecCCC---C---EEEEEeCCCeEEEEEcc
Q 009993 291 STS-GSDVYIWDTNS--GCLLTVVNGAHVGNTKSLARSHTG---D---FLFTGGEDGAIHMYEII 346 (520)
Q Consensus 291 ~~~-d~~i~iwd~~~--~~~~~~~~~~~~~~i~~l~~s~~~---~---~l~tg~~dg~i~iwd~~ 346 (520)
+++ ...|.||-... .+....-...+...|.+++|-++. . .|++++-.|.+.+|++.
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 777 46666664433 221111111356678899987643 2 78888999999998883
No 422
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=91.58 E-value=19 Score=37.35 Aligned_cols=161 Identities=11% Similarity=0.123 Sum_probs=95.4
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEE--EEeC-CCC------ceEEEEe--cCCCEEEEEeC-CC---cE
Q 009993 142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI--ASSK-PLG------CTIRAVA--ADKKLLVAGGT-DG---FI 206 (520)
Q Consensus 142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~--~~~~-~~~------~~v~~~~--~~~~~l~sg~~-dg---~i 206 (520)
.+.|-.+.|.++++.+++...+|.|.+||...+... ..+. .+. .-|..+. ....++++-+. ++ ..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 678899999999999999999999999999333211 1111 111 1122222 12344444444 32 24
Q ss_pred EEEEcccCcceeeeccCCccccceE--EeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEeeec-------c
Q 009993 207 HCWRAVEVLPHLFDISGSEKQNTQF--RLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHS-------D 277 (520)
Q Consensus 207 ~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-------~ 277 (520)
+++.+....... .... ....+...=..+++..+.|+-- .+++|.+|++...+..+++.-+ .
T Consensus 209 kL~~l~~~~~~~---------~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~ 278 (670)
T PF10395_consen 209 KLISLSNESSSI---------FELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESD 278 (670)
T ss_pred EEEEeccCCcce---------EEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccc
Confidence 455551111111 1111 1112222223455544444433 6789999999988887777622 3
Q ss_pred CEEEEe-eCCCEEEEEcCCeEEEEECCCCeeeEEee
Q 009993 278 WVYGLA-PHDTTVASTSGSDVYIWDTNSGCLLTVVN 312 (520)
Q Consensus 278 ~v~~~~-~~~~~l~~~~d~~i~iwd~~~~~~~~~~~ 312 (520)
.+.++. +..+.++.+.++.|++.|+.-...+..+.
T Consensus 279 ~~vSl~~~s~nRvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 279 DLVSLKPPSPNRVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred cceEeecCCCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence 566666 88899999999999999998766665554
No 423
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.56 E-value=11 Score=34.49 Aligned_cols=156 Identities=14% Similarity=0.155 Sum_probs=96.9
Q ss_pred cCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeecc--CEEEEe--eCCCEEEEEc-CCeEEEEECCCCee
Q 009993 235 EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSD--WVYGLA--PHDTTVASTS-GSDVYIWDTNSGCL 307 (520)
Q Consensus 235 ~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~--~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~ 307 (520)
+-...|.++.| +.+.|++......-.++=...|+.+.++.... ..-.+. .++.++++-. +..+.++.+.....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 44556999999 44678888877777788777899998887221 122233 3344444444 67777776665422
Q ss_pred eEE-----ee---ccc-ccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCC-------cCCEEEEE
Q 009993 308 LTV-----VN---GAH-VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH-------TGPVNSLA 371 (520)
Q Consensus 308 ~~~-----~~---~~~-~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h-------~~~v~~l~ 371 (520)
+.. +. ..+ +.....++|.|....|+.+-+-.-+.||.+...... ..+.....+ -..|.++.
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~---l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS---LSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc---cccccccCcccccceEeeccccce
Confidence 211 11 112 556789999999999999988888888887754211 011111111 12466777
Q ss_pred ecC---CEEEEEeCCCcEEEEeCCc
Q 009993 372 FEF---PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 372 ~~~---~~l~s~s~dg~i~vwd~~~ 393 (520)
|++ ..|+-+..++.+.-.|...
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCC
Confidence 764 4666666777777777664
No 424
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.53 E-value=1.7 Score=38.51 Aligned_cols=75 Identities=15% Similarity=0.109 Sum_probs=51.4
Q ss_pred eeeccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEe------ec-------ccccceEEEEecCCCCEEEEEeCCC
Q 009993 273 LRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVV------NG-------AHVGNTKSLARSHTGDFLFTGGEDG 338 (520)
Q Consensus 273 ~~~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~------~~-------~~~~~i~~l~~s~~~~~l~tg~~dg 338 (520)
+.-+.++..+..++.++++-+ +|.+++||+.+++.+..- .. .....|..+.++.+|.-+++-+ +|
T Consensus 9 i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng 87 (219)
T PF07569_consen 9 IVLGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NG 87 (219)
T ss_pred EecCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CC
Confidence 345566777887787777766 999999999998765432 11 2445677777777777666553 56
Q ss_pred eEEEEEcccC
Q 009993 339 AIHMYEIIND 348 (520)
Q Consensus 339 ~i~iwd~~~~ 348 (520)
..+.|+..-+
T Consensus 88 ~~y~y~~~L~ 97 (219)
T PF07569_consen 88 DSYSYSPDLG 97 (219)
T ss_pred CEEEeccccc
Confidence 7788876544
No 425
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.39 E-value=20 Score=38.00 Aligned_cols=32 Identities=16% Similarity=0.080 Sum_probs=24.4
Q ss_pred CCCCeEEEEE-----cCCEEEEEecCCeEEEEECCCC
Q 009993 236 HEGPITSLAL-----DLTRIYSGSWDMTVRVWDRALL 267 (520)
Q Consensus 236 h~~~v~~l~~-----~~~~l~s~s~dg~v~iwd~~~~ 267 (520)
+...|..+.| ++..|+.-..|+++++||+...
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 3456677777 3467888899999999999754
No 426
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.95 E-value=8.2 Score=42.50 Aligned_cols=138 Identities=15% Similarity=0.273 Sum_probs=82.6
Q ss_pred EEecCCeEEEEECCCCcEEEEee-eccCEEEEe---eC--------CCEEEEEcCCeEEEEECC----CCeee-----EE
Q 009993 252 SGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA---PH--------DTTVASTSGSDVYIWDTN----SGCLL-----TV 310 (520)
Q Consensus 252 s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~---~~--------~~~l~~~~d~~i~iwd~~----~~~~~-----~~ 310 (520)
-.+-|..+.+|+.+++.....+. ....|..+. |. ...|+.+.--.|.++-+. ++..- ..
T Consensus 94 WiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 94 WITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee
Confidence 34568899999999876666655 444455443 32 234555555555555332 21110 11
Q ss_pred eecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccc-----------------cc-eeeeeee-cCCcCCEEEEE
Q 009993 311 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE-----------------AN-VLLVATW-IPHTGPVNSLA 371 (520)
Q Consensus 311 ~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~-----------------~~-~~~~~~~-~~h~~~v~~l~ 371 (520)
+. .....|+++....+|+.+++| .|| .+|.+.-.... .. ...+..+ ..+..+|..+.
T Consensus 174 i~-~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 174 IS-VDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT 249 (1311)
T ss_pred ee-cCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence 11 135578889888888877766 555 45554221100 00 0011222 35678999999
Q ss_pred ecC--CEEEEEeCCCcEEEEeCCc
Q 009993 372 FEF--PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 372 ~~~--~~l~s~s~dg~i~vwd~~~ 393 (520)
.+. +.+.+-+..|+|.+||+..
T Consensus 250 ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 250 IDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eccccceeeeeccCceEEEEEccC
Confidence 975 6889999999999999986
No 427
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=90.94 E-value=4.9 Score=41.38 Aligned_cols=100 Identities=15% Similarity=0.224 Sum_probs=65.2
Q ss_pred cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE----cCCEEEEEecCCeEEEEECC--
Q 009993 192 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGSWDMTVRVWDRA-- 265 (520)
Q Consensus 192 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~dg~v~iwd~~-- 265 (520)
.-++..++-+....+.|||...+.. .....+ ...+.|.++.| ++..+++.+..+.|.++--.
T Consensus 39 s~~k~a~V~~~~~~LtIWD~~~~~l-----------E~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~ 106 (631)
T PF12234_consen 39 SIKKIAVVDSSRSELTIWDTRSGVL-----------EYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRY 106 (631)
T ss_pred ccCcEEEEECCCCEEEEEEcCCcEE-----------EEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccch
Confidence 3344444444456789999877631 111122 56789999999 77889999999999998532
Q ss_pred -------CCcEEEEee----eccCEEEEe-eCCCEEEEEcCCeEEEEECC
Q 009993 266 -------LLKCLKVLR----HSDWVYGLA-PHDTTVASTSGSDVYIWDTN 303 (520)
Q Consensus 266 -------~~~~~~~~~----~~~~v~~~~-~~~~~l~~~~d~~i~iwd~~ 303 (520)
+...++.+. .+.+|.+.. -.+..+++|+++.+.|+|-.
T Consensus 107 dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk~ 156 (631)
T PF12234_consen 107 DYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDKW 156 (631)
T ss_pred hhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECCC
Confidence 223344443 235666655 55667778888999998854
No 428
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.93 E-value=9.7 Score=32.84 Aligned_cols=177 Identities=14% Similarity=0.075 Sum_probs=94.6
Q ss_pred cCCCEEEEEeCC--CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEE-EecCCeEEEEECCCCc
Q 009993 192 ADKKLLVAGGTD--GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYS-GSWDMTVRVWDRALLK 268 (520)
Q Consensus 192 ~~~~~l~sg~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s-~s~dg~v~iwd~~~~~ 268 (520)
.++.++.+.+.- ..|++||+.++.........+ -.+.+ ..++ --++++.. .=.+|.-..+|.++.+
T Consensus 54 ~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~------~~~Fg--EGit---~~gd~~y~LTw~egvaf~~d~~t~~ 122 (262)
T COG3823 54 LDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP------DTVFG--EGIT---KLGDYFYQLTWKEGVAFKYDADTLE 122 (262)
T ss_pred eCCEEEEeccccccceeEEEeccCceEEEEeecCC------ccccc--ccee---eccceEEEEEeccceeEEEChHHhh
Confidence 345555555543 469999998775321100000 00001 1111 12333332 2346888899999999
Q ss_pred EEEEeeeccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEee----cccccceEEEEecCCCCEEEEEeCCCeEEEE
Q 009993 269 CLKVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVN----GAHVGNTKSLARSHTGDFLFTGGEDGAIHMY 343 (520)
Q Consensus 269 ~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~----~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iw 343 (520)
++..+..++.=..+..++..++.+. ..+++.-|+++.....++. ...-..++.+.|- +|...|-.-.+..|...
T Consensus 123 ~lg~~~y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI 201 (262)
T COG3823 123 ELGRFSYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARI 201 (262)
T ss_pred hhcccccCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEE
Confidence 9999998888888997777777666 6778888887654433332 1112223334442 45555444444445555
Q ss_pred EcccCccccce------eeeeeecCCcCCEEEEEecC---CEEEEE
Q 009993 344 EIINDCTEANV------LLVATWIPHTGPVNSLAFEF---PWLVSA 380 (520)
Q Consensus 344 d~~~~~~~~~~------~~~~~~~~h~~~v~~l~~~~---~~l~s~ 380 (520)
|..+++...-+ .....-..|....+.+++.| +++++|
T Consensus 202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 55555211000 11111223455678888866 355665
No 429
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.04 E-value=4.3 Score=39.72 Aligned_cols=141 Identities=12% Similarity=0.078 Sum_probs=84.5
Q ss_pred CCCEEE-EEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCC-------EEEEEeCCCcEEEEEcccCcceeeeccCC
Q 009993 153 SAKLLF-TSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKK-------LLVAGGTDGFIHCWRAVEVLPHLFDISGS 224 (520)
Q Consensus 153 ~~~~l~-sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-------~l~sg~~dg~i~vwd~~~~~~~~~~~~~~ 224 (520)
+..+|+ .|+....+.--|++.|+.+..+..|...+..+.|..+ .-+.|-.+..|.-.|.+-...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN-------- 549 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN-------- 549 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCC--------
Confidence 334444 4555566777788999999988888777777664322 233444455554444322110
Q ss_pred ccccceEEe--ccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEcCCeEE
Q 009993 225 EKQNTQFRL--WEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTSGSDVY 298 (520)
Q Consensus 225 ~~~~~~~~~--~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~d~~i~ 298 (520)
....... ........+..- ...+++.||..|-|++||--..+....++ ....|..+. .+|.++++.+...+.
T Consensus 550 --Ki~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yll 627 (776)
T COG5167 550 --KIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLL 627 (776)
T ss_pred --ceeeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEE
Confidence 0001111 011122223222 67899999999999999965433333333 455566555 889999999888888
Q ss_pred EEECC
Q 009993 299 IWDTN 303 (520)
Q Consensus 299 iwd~~ 303 (520)
+-|++
T Consensus 628 L~d~~ 632 (776)
T COG5167 628 LTDVP 632 (776)
T ss_pred EEecc
Confidence 88875
No 430
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.06 E-value=23 Score=34.39 Aligned_cols=180 Identities=13% Similarity=0.061 Sum_probs=98.4
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeCCCC--ceEE--EEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccc
Q 009993 154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLG--CTIR--AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNT 229 (520)
Q Consensus 154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~--~~v~--~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 229 (520)
+..++.+..||.|.-.|.+++..+.....-. ..+. .+..+| .++.++.+|.+..+|..++...
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G-~i~~g~~~g~~y~ld~~~G~~~------------ 134 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG-KIYVGSWDGKLYALDASTGTLV------------ 134 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC-eEEEecccceEEEEECCCCcEE------------
Confidence 3346666888989999999888665433221 0000 011244 4888899998888888766421
Q ss_pred eEEeccCC-CCeEE-EEEcCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe------eCCCEEEEEc---CCeEE
Q 009993 230 QFRLWEHE-GPITS-LALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA------PHDTTVASTS---GSDVY 298 (520)
Q Consensus 230 ~~~~~~h~-~~v~~-l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~------~~~~~l~~~~---d~~i~ 298 (520)
....... -.+.. .......++.++.++.+...|..++........... .... .....++.+. ++.+.
T Consensus 135 -W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~vy~~~~~~~~~~~ 212 (370)
T COG1520 135 -WSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAP-LSLSIYGSPAIASGTVYVGSDGYDGILY 212 (370)
T ss_pred -EEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCc-cccccccCceeecceEEEecCCCcceEE
Confidence 1111111 00111 111344555555789999999999988777653322 1111 2233333333 34678
Q ss_pred EEECCCCeeeEEeecccccceEE---EEecC-----CCCEEEEEeCCCeEEEEEcccC
Q 009993 299 IWDTNSGCLLTVVNGAHVGNTKS---LARSH-----TGDFLFTGGEDGAIHMYEIIND 348 (520)
Q Consensus 299 iwd~~~~~~~~~~~~~~~~~i~~---l~~s~-----~~~~l~tg~~dg~i~iwd~~~~ 348 (520)
-.|..+|.........+...-.. ..... .+.-+..++.++.+...|..++
T Consensus 213 a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G 270 (370)
T COG1520 213 ALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTG 270 (370)
T ss_pred EEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCC
Confidence 88888888776643111111110 11111 1223456777888888898888
No 431
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=89.02 E-value=0.57 Score=36.20 Aligned_cols=49 Identities=22% Similarity=0.389 Sum_probs=41.5
Q ss_pred ccCCCHHHHHHHccCCChhhhHHHhhhhhhHHHhhcCcchhhhhhhhhcCC
Q 009993 64 ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGL 114 (520)
Q Consensus 64 ~~~LP~el~~~i~~~L~~~~l~~~s~v~~~~~~~~~~~~lW~~~~~~~~~~ 114 (520)
+..+|.+++..||..+.|..|.++..-|.... ..++.+|+.++...|+.
T Consensus 4 vG~~py~ll~piL~~~~~~QL~~iE~~np~l~--~~tdeLW~~~i~rdFp~ 52 (109)
T PF06881_consen 4 VGDVPYHLLRPILEKCSPEQLRRIEDNNPHLI--EDTDELWKKLIKRDFPE 52 (109)
T ss_pred cCCCCHHHHHHHHccCCHHHHHHHHHhCCCcc--hhhHHHHHHHHHhHCcC
Confidence 78899999999999999999999988885433 24679999998888863
No 432
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=88.96 E-value=21 Score=33.84 Aligned_cols=104 Identities=10% Similarity=0.029 Sum_probs=53.3
Q ss_pred EEEcCCEEEEEecC-----CeEEEEECCCCcE---EEEee-eccC---EEEEeeCCCEEEEEc-C-----CeEEEEECCC
Q 009993 243 LALDLTRIYSGSWD-----MTVRVWDRALLKC---LKVLR-HSDW---VYGLAPHDTTVASTS-G-----SDVYIWDTNS 304 (520)
Q Consensus 243 l~~~~~~l~s~s~d-----g~v~iwd~~~~~~---~~~~~-~~~~---v~~~~~~~~~l~~~~-d-----~~i~iwd~~~ 304 (520)
+.+++..++.|+.+ ..+..+|+.+.+. ...+. .+.+ ..+...++++.+.|+ . ..+..||+.+
T Consensus 69 ~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 69 VSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred EEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCC
Confidence 34466666777654 3566777766543 12221 1111 112225666666655 2 3588899886
Q ss_pred Cee--eEEeecccccceEEEEecCCCCEEEEEeCCCe----EEEEEcccC
Q 009993 305 GCL--LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA----IHMYEIIND 348 (520)
Q Consensus 305 ~~~--~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~----i~iwd~~~~ 348 (520)
.+= +..+. ........+...++++.+.|+.++. +.+||+.+.
T Consensus 149 ~~W~~~~~~p--~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 149 QEWFELPDFP--GEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred CCeeECCCCC--CCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 542 22121 1111112222335677777876643 567887765
No 433
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=88.94 E-value=15 Score=32.31 Aligned_cols=95 Identities=21% Similarity=0.154 Sum_probs=61.4
Q ss_pred CCeEEEEEcC---CEEEEEecCCeEEEEE--CCCCcE-----EEEeeec-------cCEEEEeeCCCEEEEEc-CCeEEE
Q 009993 238 GPITSLALDL---TRIYSGSWDMTVRVWD--RALLKC-----LKVLRHS-------DWVYGLAPHDTTVASTS-GSDVYI 299 (520)
Q Consensus 238 ~~v~~l~~~~---~~l~s~s~dg~v~iwd--~~~~~~-----~~~~~~~-------~~v~~~~~~~~~l~~~~-d~~i~i 299 (520)
+--+.++|+. .+.++-+.+-+|.-|| ..+|.. +..++.. ..=+++..+|++.+++- .++|..
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQK 237 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEE
Confidence 3345677732 3455667777887787 555532 2222211 11234456677777777 899999
Q ss_pred EECCCCeeeEEeecccccceEEEEecC-CCCEEEE
Q 009993 300 WDTNSGCLLTVVNGAHVGNTKSLARSH-TGDFLFT 333 (520)
Q Consensus 300 wd~~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~t 333 (520)
+|+.+|+.+.++.. ....|++++|-- +-+.+++
T Consensus 238 ~dp~tGK~L~eikl-Pt~qitsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 238 VDPTTGKILLEIKL-PTPQITSCCFGGKNLDILYV 271 (310)
T ss_pred ECCCCCcEEEEEEc-CCCceEEEEecCCCccEEEE
Confidence 99999999999885 478899999953 3334443
No 434
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=88.75 E-value=23 Score=33.98 Aligned_cols=51 Identities=16% Similarity=0.017 Sum_probs=26.0
Q ss_pred EEEcCCEEEEEecC-----------CeEEEEECCCCcEEEEe-eecc---CEEEE-eeCCCEEEEEc
Q 009993 243 LALDLTRIYSGSWD-----------MTVRVWDRALLKCLKVL-RHSD---WVYGL-APHDTTVASTS 293 (520)
Q Consensus 243 l~~~~~~l~s~s~d-----------g~v~iwd~~~~~~~~~~-~~~~---~v~~~-~~~~~~l~~~~ 293 (520)
...++...+.|+.+ ..+..||..+.+-...- ..+. ....+ ..++++.+.|+
T Consensus 60 ~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG 126 (346)
T TIGR03547 60 AAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGG 126 (346)
T ss_pred EEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcC
Confidence 33466767777653 24777887765433221 1111 11223 35667767665
No 435
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.69 E-value=14 Score=36.61 Aligned_cols=28 Identities=21% Similarity=0.069 Sum_probs=22.9
Q ss_pred cceEEEEecCCCCEEEEEeCCCeEEEEE
Q 009993 317 GNTKSLARSHTGDFLFTGGEDGAIHMYE 344 (520)
Q Consensus 317 ~~i~~l~~s~~~~~l~tg~~dg~i~iwd 344 (520)
-.|..+..++.|..++-.+.+|.+.++=
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEc
Confidence 3577888999999999999999776654
No 436
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=88.55 E-value=23 Score=33.65 Aligned_cols=62 Identities=8% Similarity=0.024 Sum_probs=34.1
Q ss_pred EcCCEEEEEec-----CCeEEEEECCCCcEEEE--eeecc--CEEEEeeCCCEEEEEc-CC----eEEEEECCCCe
Q 009993 245 LDLTRIYSGSW-----DMTVRVWDRALLKCLKV--LRHSD--WVYGLAPHDTTVASTS-GS----DVYIWDTNSGC 306 (520)
Q Consensus 245 ~~~~~l~s~s~-----dg~v~iwd~~~~~~~~~--~~~~~--~v~~~~~~~~~l~~~~-d~----~i~iwd~~~~~ 306 (520)
+++...+.|+. ...+..||..+.+-... +.... ....+..++++.+.|+ ++ .+.+||+.+.+
T Consensus 122 ~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 122 KDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred ECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 36666666664 23688888876543222 21111 1122335666666666 42 36788988764
No 437
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=88.33 E-value=42 Score=36.46 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=74.2
Q ss_pred cCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee---eccCEEEEeeCCCEEEEEc-CCe--EEEEECCCCeee
Q 009993 235 EHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLAPHDTTVASTS-GSD--VYIWDTNSGCLL 308 (520)
Q Consensus 235 ~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~l~~~~-d~~--i~iwd~~~~~~~ 308 (520)
.-.++|.+++--.+++++|-. ..+++||+-..+.++... .+..|..+...+..+++|. ... ...|+....+.+
T Consensus 933 ~~~~~v~Ai~~f~~~~LagvG-~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l~ 1011 (1205)
T KOG1898|consen 933 EIPGPVGAICPFQGRVLAGVG-RFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQLI 1011 (1205)
T ss_pred CCCccceEEeccCCEEEEecc-cEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeEE
Confidence 345677777775566665543 689999998877666554 3667888888888888887 333 445666666665
Q ss_pred EEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEccc
Q 009993 309 TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIN 347 (520)
Q Consensus 309 ~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~ 347 (520)
......-...|+++.+- |...++.+..=|.+.+-.+..
T Consensus 1012 ~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1012 VFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred EEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence 55544445567766654 556677777777776665543
No 438
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.06 E-value=12 Score=29.84 Aligned_cols=109 Identities=9% Similarity=-0.011 Sum_probs=65.1
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECCCCc--------EEEEeCCCCceEEEEe-------cCCCEEEEEeCCCcEEEEEc
Q 009993 147 TVFVLASAKLLFTSGYDSIVRMWHLEDGF--------SIASSKPLGCTIRAVA-------ADKKLLVAGGTDGFIHCWRA 211 (520)
Q Consensus 147 ~l~~~~~~~~l~sgs~dg~v~vwd~~~~~--------~~~~~~~~~~~v~~~~-------~~~~~l~sg~~dg~i~vwd~ 211 (520)
.-.|......|+.++.-|.|.|.+..... .+..+ .-+..|.++. .....|+.|+. ..+..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 34566666788888899999999876432 22222 2234555554 23456777765 46889998
Q ss_pred ccCcceeeeccCCccccceEEeccCCCCeEEEEE-----cCCEEEEEecCCeEEEEECCCCcEEE
Q 009993 212 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-----DLTRIYSGSWDMTVRVWDRALLKCLK 271 (520)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-----~~~~l~s~s~dg~v~iwd~~~~~~~~ 271 (520)
.... ..-++.-...|.++.+ ...-++..+.+..|.-||.+..+...
T Consensus 81 ~~N~--------------d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 81 ENNS--------------DLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred ccCc--------------hhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
Confidence 7652 1122334567888877 12334444445778888876555443
No 439
>PF13013 F-box-like_2: F-box-like domain
Probab=87.98 E-value=0.62 Score=35.66 Aligned_cols=35 Identities=26% Similarity=0.232 Sum_probs=29.4
Q ss_pred CcccccccCCCHHHHHHHccCCChhhhHHHhhhhh
Q 009993 58 NLHRSTITDLPPALISEILNCLDPKELGIVSCVSP 92 (520)
Q Consensus 58 ~~~~~~~~~LP~el~~~i~~~L~~~~l~~~s~v~~ 92 (520)
..+.-.+.+||.||+..|+.|.++.++..+...|+
T Consensus 16 ~~~~ltl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 16 NRQSLTLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred CccccchhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 33333578899999999999999999988888887
No 440
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.84 E-value=22 Score=32.61 Aligned_cols=165 Identities=10% Similarity=0.042 Sum_probs=95.9
Q ss_pred hccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCC---CCceEEEEecCCCEEEEEeCCCcEEEEEcccC
Q 009993 138 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP---LGCTIRAVAADKKLLVAGGTDGFIHCWRAVEV 214 (520)
Q Consensus 138 l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~ 214 (520)
+.|-+..|.++.|+|+.+.|++......-.||=...|+.+.+++- |...-....-++.+.++--.++.+.+..+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 456667799999999999999998888888888888998888752 33333344455666666666777777766544
Q ss_pred cceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCCeEEEEECCCCcEEEEee----ec-------cCEEE
Q 009993 215 LPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLR----HS-------DWVYG 281 (520)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~----~~-------~~v~~ 281 (520)
...+. .. ............+.....++|++ ..|+.+-+-.-+.||.+......-... +. ..|.+
T Consensus 161 t~~~~-~~--~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 161 TTVIS-AK--VQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred ccEEe-cc--ceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 21110 00 00001111112256677889943 567777766667777665332111110 11 11223
Q ss_pred Ee---eCCCEEEEEc-CCeEEEEECCCC
Q 009993 282 LA---PHDTTVASTS-GSDVYIWDTNSG 305 (520)
Q Consensus 282 ~~---~~~~~l~~~~-d~~i~iwd~~~~ 305 (520)
+. ..+.+++.+. ++.+.-.|....
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCCC
Confidence 33 3456666666 566777776543
No 441
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=87.55 E-value=25 Score=33.01 Aligned_cols=88 Identities=14% Similarity=0.106 Sum_probs=57.0
Q ss_pred EEEeeCCCEEEEEc--CCeEEEEECCC--C----eeeEEeecccccceEEEEecCCCCEEEEEeCCC-eEEEEEcccCcc
Q 009993 280 YGLAPHDTTVASTS--GSDVYIWDTNS--G----CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG-AIHMYEIINDCT 350 (520)
Q Consensus 280 ~~~~~~~~~l~~~~--d~~i~iwd~~~--~----~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg-~i~iwd~~~~~~ 350 (520)
.+++|+++.++.+. .+.|+-|++.. + +..........+..-.++...+|.+.+++..+| .|.+|+.. +
T Consensus 168 la~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G-- 244 (307)
T COG3386 168 LAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G-- 244 (307)
T ss_pred eEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C--
Confidence 35569998887776 47888887752 1 111122212345556677777888776555554 89999988 6
Q ss_pred ccceeeeeeecCCcCCEEEEEecC
Q 009993 351 EANVLLVATWIPHTGPVNSLAFEF 374 (520)
Q Consensus 351 ~~~~~~~~~~~~h~~~v~~l~~~~ 374 (520)
+.+....-....+++++|-+
T Consensus 245 ----~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 245 ----KLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred ----cEEEEEECCCCCCccceEeC
Confidence 45666655557788999944
No 442
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.42 E-value=10 Score=36.74 Aligned_cols=166 Identities=13% Similarity=0.067 Sum_probs=103.6
Q ss_pred HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEE-EEeC-CCCce----EE---EEecCCCEEEEEeCC
Q 009993 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI-ASSK-PLGCT----IR---AVAADKKLLVAGGTD 203 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~-~~~~-~~~~~----v~---~~~~~~~~l~sg~~d 203 (520)
+.++.|..--..|..+-+.|||+.++.-+. .++.|+++.+.... +.+. ...+. |. .+-..+..+.+++.|
T Consensus 211 e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~d 289 (733)
T COG4590 211 EIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHED 289 (733)
T ss_pred hhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCC
Confidence 345556666778888889999998887665 67889988754321 1111 10111 11 112456678899999
Q ss_pred CcEEEE-EcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee--eccC
Q 009993 204 GFIHCW-RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDW 278 (520)
Q Consensus 204 g~i~vw-d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~ 278 (520)
|.|.-| |+..+.. ........+.-...++..+.. +.+-+++-+..|++..+.....+.+-.-. ....
T Consensus 290 G~vsQWFdvr~~~~--------p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~ 361 (733)
T COG4590 290 GLVSQWFDVRRDGQ--------PHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQ 361 (733)
T ss_pred CceeeeeeeecCCC--------CcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcc
Confidence 999887 4443321 111122222222344555554 33558888899999988765554433322 4556
Q ss_pred EEEEeeCCCEEEEEcCCeEEEEECCCCee
Q 009993 279 VYGLAPHDTTVASTSGSDVYIWDTNSGCL 307 (520)
Q Consensus 279 v~~~~~~~~~l~~~~d~~i~iwd~~~~~~ 307 (520)
+..++|.+.++++-..|.++++.+++..+
T Consensus 362 ~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 362 LVAMSPNQAYLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred eeeeCcccchheeecCCceEEEEecCCCC
Confidence 77788999999998899999998877544
No 443
>PRK10115 protease 2; Provisional
Probab=87.39 E-value=44 Score=35.63 Aligned_cols=192 Identities=9% Similarity=-0.069 Sum_probs=96.5
Q ss_pred ccEEEEEEccCCCEEEEEeC-----CCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCC------CcEEEEEc
Q 009993 143 EAVLTVFVLASAKLLFTSGY-----DSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTD------GFIHCWRA 211 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~sgs~-----dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~d------g~i~vwd~ 211 (520)
-.+..+.++|||++|+-+.. ...|++-|+.+|..+...........++.++++.|+....+ ..|..+++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 45777889999998886533 23588999988864332222222335677888766655442 25666776
Q ss_pred ccCcceeeeccCCccccceEEeccCCCCeE--EEEE-cCCEEEEEec---CCeEEEEECC--CCcEEEEee-eccCEEEE
Q 009993 212 VEVLPHLFDISGSEKQNTQFRLWEHEGPIT--SLAL-DLTRIYSGSW---DMTVRVWDRA--LLKCLKVLR-HSDWVYGL 282 (520)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~l~~-~~~~l~s~s~---dg~v~iwd~~--~~~~~~~~~-~~~~v~~~ 282 (520)
.++.. .....+........ .... ++.+++..+. ++.+.+++.. ++.....+. .......+
T Consensus 207 gt~~~-----------~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 275 (686)
T PRK10115 207 GTPAS-----------QDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSL 275 (686)
T ss_pred CCChh-----------HCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEE
Confidence 66521 01111212122222 1112 5666554433 3568888843 333222233 22233333
Q ss_pred ee-CCCEEEEEc-C---CeEEEEECCCCeeeEEeeccc-ccceEEEEecCCCCEEEEEeCCCeEEEEEcc
Q 009993 283 AP-HDTTVASTS-G---SDVYIWDTNSGCLLTVVNGAH-VGNTKSLARSHTGDFLFTGGEDGAIHMYEII 346 (520)
Q Consensus 283 ~~-~~~~l~~~~-d---~~i~iwd~~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~ 346 (520)
.. .+.+++... + ..|...++........+.... ...+..+.+. .+.++++...+|.-+++-+.
T Consensus 276 ~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 276 DHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred EeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 33 333333333 2 234444554211222333221 2367777776 34566667778776665554
No 444
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=86.96 E-value=4.4 Score=39.56 Aligned_cols=80 Identities=11% Similarity=0.052 Sum_probs=57.8
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe----cCC----------------
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA----ADK---------------- 194 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~----~~~---------------- 194 (520)
...|......+.++..+|++++.|+...=|.|.++|+.++..++.+++-...-..+- ...
T Consensus 300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcce
Confidence 445667778899999999999888887779999999999988887776554333321 111
Q ss_pred C-EEEEEeCCCcEEEEEcccC
Q 009993 195 K-LLVAGGTDGFIHCWRAVEV 214 (520)
Q Consensus 195 ~-~l~sg~~dg~i~vwd~~~~ 214 (520)
. +++-+-.-|.|-||.++++
T Consensus 380 l~LvIyaprRg~lEvW~~~~g 400 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQG 400 (415)
T ss_pred EEEEEEeccCCeEEEEecCCC
Confidence 1 2334556788889988765
No 445
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.65 E-value=5.2 Score=43.95 Aligned_cols=188 Identities=15% Similarity=0.175 Sum_probs=99.1
Q ss_pred HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe---cCC-------CEEEEEeC
Q 009993 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA---ADK-------KLLVAGGT 202 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~---~~~-------~~l~sg~~ 202 (520)
+++..+. |...=+.+-+-|.=..... +-|+.+.+|+.+++.....+.+-...|..+. |.. ++++.-+.
T Consensus 70 el~eq~~-~~~~~~~mGiFpeI~RaWi-TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT 147 (1311)
T KOG1900|consen 70 ELLEQFS-NIECKTDMGIFPEIGRAWI-TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT 147 (1311)
T ss_pred HHHHHhc-CcceeeeeccchhhcceEE-EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc
Confidence 4454444 4444444555554333332 4588999999999888888877666666654 332 23333344
Q ss_pred CCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEE
Q 009993 203 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYG 281 (520)
Q Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~ 281 (520)
--.|.++-+.-..... +.........+......|+|+.. +.+.++-++.|| .+|.+.-.. ..+|-..
T Consensus 148 ~~ei~ilgV~~~~~~~----~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~------~~gWf~~ 215 (1311)
T KOG1900|consen 148 PVEIVILGVSFDEFTG----ELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDG--NLYELVYQA------EDGWFGS 215 (1311)
T ss_pred cceEEEEEEEeccccC----cccccccceeeecCCceEEEEEeccCCcEEEeecCC--CEEEEEEec------cCchhhc
Confidence 4456665442221100 00001111333344567788886 555555666666 444431000 0000000
Q ss_pred EeeCCCEEEEEcCCeEEEEECCCCe------eeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993 282 LAPHDTTVASTSGSDVYIWDTNSGC------LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND 348 (520)
Q Consensus 282 ~~~~~~~l~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~ 348 (520)
..+..++..+. .+..+...+..+|..+......+.+.+=++.|+|.+||+...
T Consensus 216 --------------rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 216 --------------RCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred --------------ccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence 00011111000 011111347789999999888889999999999999999874
No 446
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=86.40 E-value=31 Score=34.25 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=25.6
Q ss_pred cceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993 317 GNTKSLARSHTGDFLFTGGEDGAIHMYEIIND 348 (520)
Q Consensus 317 ~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~ 348 (520)
..|..++..+..+.+++...+|.|.+|++..+
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 34889999998899999999999999999753
No 447
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=86.09 E-value=23 Score=31.20 Aligned_cols=86 Identities=10% Similarity=-0.035 Sum_probs=52.7
Q ss_pred EEEEEeCCCcEEEEE--cccCcc----eeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcE
Q 009993 196 LLVAGGTDGFIHCWR--AVEVLP----HLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKC 269 (520)
Q Consensus 196 ~l~sg~~dg~i~vwd--~~~~~~----~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~ 269 (520)
+.++-+.+-+|.-|| ..+|.. .++++....+.. ...-.=.++.-+|+..+++-..++|...|..+|+.
T Consensus 172 fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e------~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~ 245 (310)
T KOG4499|consen 172 FYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFE------SLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKI 245 (310)
T ss_pred EEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcC------CCCCCcceEccCCcEEEEEecCcEEEEECCCCCcE
Confidence 445666778887787 555432 222222211110 00011123333778888888889999999999999
Q ss_pred EEEee-eccCEEEEeeCCC
Q 009993 270 LKVLR-HSDWVYGLAPHDT 287 (520)
Q Consensus 270 ~~~~~-~~~~v~~~~~~~~ 287 (520)
+..+. ....|++.+..|.
T Consensus 246 L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 246 LLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred EEEEEcCCCceEEEEecCC
Confidence 99998 6677888875443
No 448
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=85.95 E-value=18 Score=39.06 Aligned_cols=130 Identities=13% Similarity=0.136 Sum_probs=86.7
Q ss_pred CeEEEEECC-CCcE---EEEeeeccCEEEEeeCCCEEEEEcCCeEEEEECCCCeeeEEeeccc-ccceEEEEecCCCCEE
Q 009993 257 MTVRVWDRA-LLKC---LKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAH-VGNTKSLARSHTGDFL 331 (520)
Q Consensus 257 g~v~iwd~~-~~~~---~~~~~~~~~v~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l 331 (520)
|.++.|++- .++. ++.......+.++.+....+.+|-+..+++||+...+++++....+ ...|+.+.+ .+..+
T Consensus 912 g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI 989 (1205)
T KOG1898|consen 912 GFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARI 989 (1205)
T ss_pred CceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEE
Confidence 446666543 3342 2333356788889988888888889999999999888777665444 456667666 46788
Q ss_pred EEEeCCCeEEEEEcccCccccceeeeeeecCC--cCCEEEEEe-cCCEEEEEeCCCcEEEEeCCc
Q 009993 332 FTGGEDGAIHMYEIINDCTEANVLLVATWIPH--TGPVNSLAF-EFPWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 332 ~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~-~~~~l~s~s~dg~i~vwd~~~ 393 (520)
++|...-.+.++..+... ..+..+... ...|+++.+ +.+.++.+..=|.+.+-.+..
T Consensus 990 ~VgD~qeSV~~~~y~~~~-----n~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 990 VVGDIQESVHFVRYRRED-----NQLIVFADDPVPRHVTALELLDYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred EEeeccceEEEEEEecCC-----CeEEEEeCCCccceeeEEEEecCCceeeccccCcEEEEECCC
Confidence 888877777776655442 223333322 235666666 668888888888887776653
No 449
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.56 E-value=14 Score=40.89 Aligned_cols=30 Identities=7% Similarity=0.055 Sum_probs=25.4
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 009993 143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLE 172 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~ 172 (520)
.....++|+|...+++.|+.+|.|+++-..
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEeccc
Confidence 344677899999999999999999999754
No 450
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=85.40 E-value=32 Score=32.17 Aligned_cols=139 Identities=14% Similarity=0.085 Sum_probs=64.5
Q ss_pred cCCEEEEEecCCeEEEEECCCCcEEEEee--eccCEEEEe--eCCCEEEEEcCCeE-EEEECCCCeeeEEeecccccceE
Q 009993 246 DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA--PHDTTVASTSGSDV-YIWDTNSGCLLTVVNGAHVGNTK 320 (520)
Q Consensus 246 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~--~~~~~l~~~~d~~i-~iwd~~~~~~~~~~~~~~~~~i~ 320 (520)
+......++..|.|.. ..+.++.-+.+. ....+..+. +++++++++..|.+ .-||.-... -......-...|.
T Consensus 113 ~~~~~~l~~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-w~~~~r~~~~riq 190 (302)
T PF14870_consen 113 GDGSAELAGDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-WQPHNRNSSRRIQ 190 (302)
T ss_dssp ETTEEEEEETT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EE
T ss_pred CCCcEEEEcCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc-ceEEccCccceeh
Confidence 4555554555554332 222333322222 345566655 88999999996554 567754321 1111112467899
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-CEEEEEeCCCcEEE
Q 009993 321 SLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSL 388 (520)
Q Consensus 321 ~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~v 388 (520)
.|.|.|++.+.+++ ..|.|++=+......... +.+.......-.+..++|.+ +.+.+++..|.+.+
T Consensus 191 ~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~-~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~ 257 (302)
T PF14870_consen 191 SMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS-EPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV 257 (302)
T ss_dssp EEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE----B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE
T ss_pred hceecCCCCEEEEe-CCcEEEEccCCCCccccc-cccCCcccCceeeEEEEecCCCCEEEEeCCccEEE
Confidence 99999998876655 888888877222210000 01111112233478899964 56666666665544
No 451
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.05 E-value=61 Score=35.09 Aligned_cols=113 Identities=13% Similarity=0.013 Sum_probs=53.9
Q ss_pred ccCEEEEeeCCCEEEEEcC-CeEEEEECCCCeeeEEeeccc--ccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcccc
Q 009993 276 SDWVYGLAPHDTTVASTSG-SDVYIWDTNSGCLLTVVNGAH--VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA 352 (520)
Q Consensus 276 ~~~v~~~~~~~~~l~~~~d-~~i~iwd~~~~~~~~~~~~~~--~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~ 352 (520)
.....+.+..+..+.++-. ....++...++.....+..+. ...-..++-..++..++.| .|+...+-|.......
T Consensus 157 ~~~p~~~~~~~~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~~~s~~P~I~~l~~~~~ll~~-kd~~gv~vd~~G~~~~- 234 (877)
T KOG2063|consen 157 PDVPKARAWCGHIVCLGLKKSYYIINNTSKGVGPNLFPSSMDNESRKPLIKSLSDQSELLLG-KDNIGVVVDLNGIIAQ- 234 (877)
T ss_pred ccchhhhcccceeEEEeecceeEEEecCCCccccceeeeccccccCCCeEEEecCCceEEEc-cCceEEEEecCCcccC-
Confidence 3333444455555555553 344444444442111111111 1111223333455456655 6666666675444210
Q ss_pred ceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccc
Q 009993 353 NVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLR 396 (520)
Q Consensus 353 ~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~ 396 (520)
..++ .-......+.+...++++-+.. .|.||+..+...
T Consensus 235 ----~~~l-~ws~~P~~v~~~~PYlIa~~~~-~veI~s~~~~ql 272 (877)
T KOG2063|consen 235 ----RGTL-VWSEVPLSVVVESPYLIALLDR-SVEIRSKLDGQL 272 (877)
T ss_pred ----CCce-EecccchhhcccCceEEEEccc-cEEEEeccCHHH
Confidence 0000 0122345556666777776655 999999988633
No 452
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.82 E-value=22 Score=34.60 Aligned_cols=146 Identities=10% Similarity=0.069 Sum_probs=0.0
Q ss_pred CCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEc---ccCccccceeeeeee
Q 009993 285 HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI---INDCTEANVLLVATW 360 (520)
Q Consensus 285 ~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~---~~~~~~~~~~~~~~~ 360 (520)
+..++++.+ +-+=.+-...+......+.....++|.++.|++|.+.+|+--.|.+|.+++. .+.. ....+.
T Consensus 34 NkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l-----~~~~~c 108 (657)
T KOG2377|consen 34 NKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL-----EYTQEC 108 (657)
T ss_pred cceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh-----HHHHHh
Q ss_pred cCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC----EE
Q 009993 361 IPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD----RI 436 (520)
Q Consensus 361 ~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~l 436 (520)
...+..|....|..+.=++--.+.-+.+|-.... ....+....|...|.-..+..+ .|
T Consensus 109 k~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pe------------------krslRlVks~~~nvnWy~yc~et~v~LL 170 (657)
T KOG2377|consen 109 KTKNANILGFCWTSSTEIAFITDQGIEFYQVLPE------------------KRSLRLVKSHNLNVNWYMYCPETAVILL 170 (657)
T ss_pred ccCcceeEEEEEecCeeEEEEecCCeEEEEEchh------------------hhhhhhhhhcccCccEEEEccccceEee
Q ss_pred EEecCCCeEEEEeCCch
Q 009993 437 VCGGEEGIVRIWNFSQA 453 (520)
Q Consensus 437 ~sg~~Dg~v~iwd~~~~ 453 (520)
+|+-...++.=+-++++
T Consensus 171 ~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 171 STTVLENVLNPFHFRAG 187 (657)
T ss_pred eccccccccccEEEeec
No 453
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=84.61 E-value=39 Score=32.43 Aligned_cols=37 Identities=5% Similarity=-0.077 Sum_probs=18.8
Q ss_pred CeEEEEECCCCcEEEE--eeec-cCEEEE-eeCCCEEEEEc
Q 009993 257 MTVRVWDRALLKCLKV--LRHS-DWVYGL-APHDTTVASTS 293 (520)
Q Consensus 257 g~v~iwd~~~~~~~~~--~~~~-~~v~~~-~~~~~~l~~~~ 293 (520)
..+..||..+.+-... +... ..-.++ ..++++++.|+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG 208 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLING 208 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEee
Confidence 4688889876543322 2211 111223 35667766665
No 454
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=84.15 E-value=51 Score=33.45 Aligned_cols=146 Identities=16% Similarity=0.137 Sum_probs=84.1
Q ss_pred CCCeEEEEE-cCCEEEEEe---cCCeEEEEECCCCcEEEEeeeccCEEEEe-------eCCCEEEEEcCCeEEEEECCC-
Q 009993 237 EGPITSLAL-DLTRIYSGS---WDMTVRVWDRALLKCLKVLRHSDWVYGLA-------PHDTTVASTSGSDVYIWDTNS- 304 (520)
Q Consensus 237 ~~~v~~l~~-~~~~l~s~s---~dg~v~iwd~~~~~~~~~~~~~~~v~~~~-------~~~~~l~~~~d~~i~iwd~~~- 304 (520)
-.+|..++| ||+.++-.. .+|.+++=|. ..+..|.| |..+. ....++|+-....|.+|.+..
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~viGqFEh---V~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVIGQFEH---VHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCCc---cEeeccce---eeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 357889999 887755433 3445544432 23333333 44444 124577777799999998752
Q ss_pred ----CeeeEEeec----ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe--cC
Q 009993 305 ----GCLLTVVNG----AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--EF 374 (520)
Q Consensus 305 ----~~~~~~~~~----~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~ 374 (520)
++.+..... ...--...+.|+|....|++-.....-.+++++.... .+..=....+.|.|.+| ++
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s-----rVkaDi~~~G~IhCACWT~DG 167 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS-----RVKADIKTSGLIHCACWTKDG 167 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc-----eEEEeccCCceEEEEEecCcC
Confidence 222211111 1111224577999998888766655555677766532 22222245678999999 55
Q ss_pred CEEEEE-eCCCcEEEEeCCc
Q 009993 375 PWLVSA-AGDGKLSLIDVRK 393 (520)
Q Consensus 375 ~~l~s~-s~dg~i~vwd~~~ 393 (520)
++|+.+ +..=.-++||-..
T Consensus 168 ~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CEEEEEeCCeEEEEEecCch
Confidence 555444 4444568998654
No 455
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=84.09 E-value=53 Score=33.55 Aligned_cols=232 Identities=13% Similarity=0.056 Sum_probs=112.2
Q ss_pred cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccC-CCCeEEEEE-cCC--EEEEEecC--CeEEEEECC
Q 009993 192 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH-EGPITSLAL-DLT--RIYSGSWD--MTVRVWDRA 265 (520)
Q Consensus 192 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~-~~~--~l~s~s~d--g~v~iwd~~ 265 (520)
.++..++.+..+|.+....+..... .......+. .....++.+ +.+ +++.||.- +.+.-|...
T Consensus 220 ~~~~~~lL~~e~G~l~~l~l~~~~~-----------~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~ 288 (504)
T PF10433_consen 220 KDGDRILLQDEDGDLYLLTLDNDGG-----------SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLS 288 (504)
T ss_dssp TTSSEEEEEETTSEEEEEEEEEEEE-----------EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESE
T ss_pred CCCCEEEEEeCCCeEEEEEEEECCC-----------eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCC
Confidence 4577899999999998887654320 112222233 455667777 566 88888864 455556655
Q ss_pred CCcEEEEeeeccCEEEEe-e----C-C-------CEEEEEc---CCeEEEEECCCCee---eEEeecccccceEEEEecC
Q 009993 266 LLKCLKVLRHSDWVYGLA-P----H-D-------TTVASTS---GSDVYIWDTNSGCL---LTVVNGAHVGNTKSLARSH 326 (520)
Q Consensus 266 ~~~~~~~~~~~~~v~~~~-~----~-~-------~~l~~~~---d~~i~iwd~~~~~~---~~~~~~~~~~~i~~l~~s~ 326 (520)
..+.+..+..-++|..+. . . . +++++++ +|.+++..-.-+-. ...........++.+....
T Consensus 289 ~l~~~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~ 368 (504)
T PF10433_consen 289 NLEVLDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSS 368 (504)
T ss_dssp SEEEEEEE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSS
T ss_pred CcEEEEeccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecC
Confidence 556666777777888776 1 1 1 3344433 47788874321111 1111111133444554432
Q ss_pred -CCCEEEEEeCCCeEEEEEcccCccccceeeee--eecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCC
Q 009993 327 -TGDFLFTGGEDGAIHMYEIINDCTEANVLLVA--TWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSG 403 (520)
Q Consensus 327 -~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~--~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 403 (520)
++.+|+.+..+. -+++.+...........+. .+......+.+-.+..+.++=....+ |++.+.........
T Consensus 369 ~~~~~lv~S~~~~-T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~~~-i~l~~~~~~~~~~~---- 442 (504)
T PF10433_consen 369 SDHSYLVLSFPNE-TRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTPKG-IRLIDLEDGKLTQE---- 442 (504)
T ss_dssp SSBSEEEEEESSE-EEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEESSE-EEEEESSSTSEEEE----
T ss_pred CCceEEEEEcCCc-eEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEecCe-EEEEECCCCeEEEE----
Confidence 245777666554 4466664210000001110 12222223333333455555555543 67776544211100
Q ss_pred CceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchH
Q 009993 404 KRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAF 454 (520)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~ 454 (520)
........+.+.+.++.+++.+-.+|.+..+.+....
T Consensus 443 --------------w~~~~~~~I~~a~~~~~~v~v~~~~~~~~~~~~~~~~ 479 (504)
T PF10433_consen 443 --------------WKPPAGSIIVAASINDPQVLVALSGGELVYFELDDNK 479 (504)
T ss_dssp --------------EE-TTS---SEEEESSSEEEEEE-TTEEEEEEEETTE
T ss_pred --------------EeCCCCCeEEEEEECCCEEEEEEeCCcEEEEEEECCc
Confidence 0011334566666777777777778899999887543
No 456
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=83.64 E-value=27 Score=34.57 Aligned_cols=133 Identities=16% Similarity=0.164 Sum_probs=78.1
Q ss_pred EEEecCCeEEEEECCCCcEEEEee-eccCEEEEee--------CCCEEEEEcCCeEEEEECCCCe-eeEEeecccccceE
Q 009993 251 YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAP--------HDTTVASTSGSDVYIWDTNSGC-LLTVVNGAHVGNTK 320 (520)
Q Consensus 251 ~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~--------~~~~l~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~i~ 320 (520)
..|..-..++--|++.|+.+.... +...|....| +...|+.-++..|.-.|++-.. .+.... ....++
T Consensus 484 ~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e--sKdY~t 561 (776)
T COG5167 484 LDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE--SKDYKT 561 (776)
T ss_pred ecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee--ehhccc
Confidence 344555667777888888888877 4444443332 3556777778777777876432 222221 112222
Q ss_pred EEEec----CCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe--cCCEEEEEeCCCcEEEEeCC
Q 009993 321 SLARS----HTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDVR 392 (520)
Q Consensus 321 ~l~~s----~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~ 392 (520)
.-.|+ ....++++|+..|.|++||--... ....+.+-...|..+.. ++.++++.+. ..+.+-|++
T Consensus 562 Kn~Fss~~tTesGyIa~as~kGDirLyDRig~r------AKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 562 KNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR------AKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred cccccccccccCceEEEecCCCceeeehhhcch------hhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 22232 245689999999999999964431 12223344556666665 5566655544 467777775
No 457
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=83.53 E-value=2.4 Score=44.34 Aligned_cols=118 Identities=10% Similarity=0.138 Sum_probs=70.5
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCce-------------EEEEecCCCEEEEEeCCCcEEEEE
Q 009993 144 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT-------------IRAVAADKKLLVAGGTDGFIHCWR 210 (520)
Q Consensus 144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~-------------v~~~~~~~~~l~sg~~dg~i~vwd 210 (520)
.|.-+-|.++.-++..+-.+++|++.+..+... .-+.+|... +..++|||..++.++.||.++.|.
T Consensus 185 ~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 185 LVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred eeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence 344444455677888888899999887765432 223345433 335679999999999999999987
Q ss_pred cccCcceeeeccCCccccceEEeccCC-CCeEEEEEcC-----------CEEEEEe-cCCeEEEEECCCCcEE
Q 009993 211 AVEVLPHLFDISGSEKQNTQFRLWEHE-GPITSLALDL-----------TRIYSGS-WDMTVRVWDRALLKCL 270 (520)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~-----------~~l~s~s-~dg~v~iwd~~~~~~~ 270 (520)
+.- .+.....+......|. .+-.|..++. .++++++ .+..+++|.....+|+
T Consensus 264 iyi--------~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 264 IYI--------TGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eee--------eccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 521 1112223344444554 3333333411 1244444 3567999998888777
No 458
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=83.50 E-value=24 Score=35.02 Aligned_cols=27 Identities=11% Similarity=0.478 Sum_probs=20.1
Q ss_pred eEEEEecC--CEEEEecCCCeEEEEeCCc
Q 009993 426 LLSVDIGA--DRIVCGGEEGIVRIWNFSQ 452 (520)
Q Consensus 426 v~~~~~~~--~~l~sg~~Dg~v~iwd~~~ 452 (520)
+..+..++ +.+++...+|.|.+|++..
T Consensus 192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 192 IVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred eeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 66666554 4999999999999999974
No 459
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.31 E-value=6.1 Score=23.82 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=21.6
Q ss_pred eCCCEEEEEc--CCeEEEEECCCCeeeEEeec
Q 009993 284 PHDTTVASTS--GSDVYIWDTNSGCLLTVVNG 313 (520)
Q Consensus 284 ~~~~~l~~~~--d~~i~iwd~~~~~~~~~~~~ 313 (520)
|+++.++++. ++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 3566666655 68889999888887777753
No 460
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=82.94 E-value=2.8 Score=43.98 Aligned_cols=58 Identities=19% Similarity=0.324 Sum_probs=37.4
Q ss_pred CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe-------------cCCEEEEEeCCCcEEEEeC
Q 009993 327 TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF-------------EFPWLVSAAGDGKLSLIDV 391 (520)
Q Consensus 327 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~-------------~~~~l~s~s~dg~i~vwd~ 391 (520)
+..++..+-.++.|++....... ..-+.+|...++.++| ++..++.+..||.++.|.+
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~-------~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRAL-------RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred ccceeeeccCCCceeEeeechHH-------HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 55677778888999888776652 2334558777776665 3345666666666665554
No 461
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=82.88 E-value=42 Score=31.46 Aligned_cols=67 Identities=18% Similarity=0.075 Sum_probs=50.3
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCC-------ceEEEEecCCCEEEEEeCCCcEEEEEc
Q 009993 145 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-------CTIRAVAADKKLLVAGGTDGFIHCWRA 211 (520)
Q Consensus 145 V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~l~sg~~dg~i~vwd~ 211 (520)
|.+|...++|.+|+|.-.-.+|.+.|-.+|+.+..+.+.. ....+...+-+.+-.+..++.|.++|=
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 5666778899999999888999999999999998887652 222333355555556677889999985
No 462
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=82.63 E-value=50 Score=32.23 Aligned_cols=230 Identities=16% Similarity=0.080 Sum_probs=129.3
Q ss_pred EEEEEEccCCCEEEEEe-CCCeEEEEECCCCcEEEEeC-C-CCceEEEEecCCC-EEEEEeCCCcEEEEEcccCcceeee
Q 009993 145 VLTVFVLASAKLLFTSG-YDSIVRMWHLEDGFSIASSK-P-LGCTIRAVAADKK-LLVAGGTDGFIHCWRAVEVLPHLFD 220 (520)
Q Consensus 145 V~~l~~~~~~~~l~sgs-~dg~v~vwd~~~~~~~~~~~-~-~~~~v~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~ 220 (520)
...+...+++..+.... ....+...+........... + -...-..+.+.+. ..++...++.|.+.|..+...
T Consensus 33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~---- 108 (381)
T COG3391 33 PGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV---- 108 (381)
T ss_pred CceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce----
Confidence 34566777774444332 22345555544221111111 1 1112334556666 444455568899998654321
Q ss_pred ccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec---CCeEEEEECCCCcEEEEeee-ccC-EEEEeeCCCEEEEEc
Q 009993 221 ISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW---DMTVRVWDRALLKCLKVLRH-SDW-VYGLAPHDTTVASTS 293 (520)
Q Consensus 221 ~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~-~~~-v~~~~~~~~~l~~~~ 293 (520)
......+. ....+++ +++.++.+.. ++++.+.|..+.+.+....- ..+ -..+.+++..++.+.
T Consensus 109 --------~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~ 178 (381)
T COG3391 109 --------LGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTN 178 (381)
T ss_pred --------eeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEe
Confidence 11111122 3445555 5666665554 68999999999998888652 223 334448999777766
Q ss_pred --CCeEEEEECCCCeeeE-Eee--cccccceEEEEecCCCCEEEEEeCC---CeEEEEEcccCccccceeeeee-ecCCc
Q 009993 294 --GSDVYIWDTNSGCLLT-VVN--GAHVGNTKSLARSHTGDFLFTGGED---GAIHMYEIINDCTEANVLLVAT-WIPHT 364 (520)
Q Consensus 294 --d~~i~iwd~~~~~~~~-~~~--~~~~~~i~~l~~s~~~~~l~tg~~d---g~i~iwd~~~~~~~~~~~~~~~-~~~h~ 364 (520)
++.|.++|........ ... ..-......+.++|+|..+.+.... +.+...|..++. .... .....
T Consensus 179 ~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~------v~~~~~~~~~ 252 (381)
T COG3391 179 SDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN------VTATDLPVGS 252 (381)
T ss_pred cCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce------EEEecccccc
Confidence 7999999977665553 100 0123344678899999976665443 588888888772 2222 11111
Q ss_pred CCEEEEEecC--CEEEEE-eCCCcEEEEeCCcc
Q 009993 365 GPVNSLAFEF--PWLVSA-AGDGKLSLIDVRKL 394 (520)
Q Consensus 365 ~~v~~l~~~~--~~l~s~-s~dg~i~vwd~~~~ 394 (520)
.....+..+| ..+.+. +..+.+.+-|..+.
T Consensus 253 ~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 253 GAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred CCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 1234455554 555555 34578888888764
No 463
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.40 E-value=25 Score=38.47 Aligned_cols=79 Identities=16% Similarity=0.080 Sum_probs=50.9
Q ss_pred EEcCCeEEEEECCCCee-eEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEE
Q 009993 291 STSGSDVYIWDTNSGCL-LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNS 369 (520)
Q Consensus 291 ~~~d~~i~iwd~~~~~~-~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~ 369 (520)
.-.|+.|++..+..... +..+ .-....++++|+|.|+.++.|...|++.-|...-...... .+.-.. ....|.+
T Consensus 174 ~l~dlsl~V~~~~~~~~~v~s~--p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~i-p~Pp~~--e~yrvl~ 248 (1405)
T KOG3630|consen 174 DLSDLSLRVKSTKQLAQNVTSF--PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEI-PEPPVE--ENYRVLS 248 (1405)
T ss_pred hccccchhhhhhhhhhhhhccc--CcccceeeEEeccccceeeEecCCCeEEEeecccceeecc-cCCCcC--CCcceeE
Confidence 33388888877654332 2222 2456789999999999999999999999987654411000 000001 1467999
Q ss_pred EEecC
Q 009993 370 LAFEF 374 (520)
Q Consensus 370 l~~~~ 374 (520)
|.|-.
T Consensus 249 v~Wl~ 253 (1405)
T KOG3630|consen 249 VTWLS 253 (1405)
T ss_pred EEEec
Confidence 99943
No 464
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=81.95 E-value=45 Score=31.21 Aligned_cols=143 Identities=13% Similarity=0.115 Sum_probs=66.7
Q ss_pred eEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee----eccCEEEEe--eCCCEEEEEcCCeEEEEECCCCeeeEEeec
Q 009993 240 ITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR----HSDWVYGLA--PHDTTVASTSGSDVYIWDTNSGCLLTVVNG 313 (520)
Q Consensus 240 v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~----~~~~v~~~~--~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~ 313 (520)
..++.+.++....++..+. .+.-.+.++.-..+. .+.....+. .++..++++..|.|+. ..+.|+.-..+..
T Consensus 64 l~~I~f~~~~g~ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~-T~DgG~tW~~~~~ 141 (302)
T PF14870_consen 64 LNSISFDGNEGWIVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYR-TTDGGKTWQAVVS 141 (302)
T ss_dssp EEEEEEETTEEEEEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEE-ESSTTSSEEEEE-
T ss_pred EEEEEecCCceEEEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEE-eCCCCCCeeEccc
Confidence 5567775544444555554 333344444333332 222333333 3333334444454332 2233443333333
Q ss_pred ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-CEEEEEeCCCcEEEEe
Q 009993 314 AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLID 390 (520)
Q Consensus 314 ~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd 390 (520)
.-.+.+..+..+++|.+++++..-....-||.-... ..+.. ......|..+.|++ ..|......|.|+.=+
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~----w~~~~--r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~ 213 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT----WQPHN--RNSSRRIQSMGFSPDGNLWMLARGGQIQFSD 213 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-----EEEE----SSS-EEEEEE-TTS-EEEEETTTEEEEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc----ceEEc--cCccceehhceecCCCCEEEEeCCcEEEEcc
Confidence 456788899999999998888665555567643320 01111 22456899999976 3554556888888877
No 465
>PLN02153 epithiospecifier protein
Probab=81.70 E-value=50 Score=31.59 Aligned_cols=103 Identities=17% Similarity=0.086 Sum_probs=51.5
Q ss_pred EcCCEEEEEecC-------CeEEEEECCCCcEEEEeee---cc----CEEEEeeCCCEEEEEc-C-----CeEEEEECCC
Q 009993 245 LDLTRIYSGSWD-------MTVRVWDRALLKCLKVLRH---SD----WVYGLAPHDTTVASTS-G-----SDVYIWDTNS 304 (520)
Q Consensus 245 ~~~~~l~s~s~d-------g~v~iwd~~~~~~~~~~~~---~~----~v~~~~~~~~~l~~~~-d-----~~i~iwd~~~ 304 (520)
.++..++.|+.+ ..+.+||..+.+-...... +. ....+..++++++.|+ + ..+.+||+.+
T Consensus 31 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 31 VGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred ECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCC
Confidence 355666666653 3578888877543322111 11 1222335666666665 3 3588899887
Q ss_pred CeeeE--Eeec---ccccceEEEEecCCCCEEEEEeCC-----------CeEEEEEcccC
Q 009993 305 GCLLT--VVNG---AHVGNTKSLARSHTGDFLFTGGED-----------GAIHMYEIIND 348 (520)
Q Consensus 305 ~~~~~--~~~~---~~~~~i~~l~~s~~~~~l~tg~~d-----------g~i~iwd~~~~ 348 (520)
.+-.. .+.. .....-.+++. -++++++.|+.+ ..+.+||..+.
T Consensus 111 ~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~ 169 (341)
T PLN02153 111 NEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADG 169 (341)
T ss_pred CEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEEEECCCC
Confidence 54221 1100 00011112222 355666676653 24777887765
No 466
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=81.36 E-value=1.3 Score=42.30 Aligned_cols=37 Identities=22% Similarity=0.208 Sum_probs=32.2
Q ss_pred ccCCCHHHHHHHccCC-ChhhhHHHhhhhhhHHHhhcC
Q 009993 64 ITDLPPALISEILNCL-DPKELGIVSCVSPILHRLASD 100 (520)
Q Consensus 64 ~~~LP~el~~~i~~~L-~~~~l~~~s~v~~~~~~~~~~ 100 (520)
-..||+|++..|...| ..-|+.+.+.||+.|+.-+..
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 3579999999999999 556999999999999987753
No 467
>PLN02193 nitrile-specifier protein
Probab=81.23 E-value=65 Score=32.55 Aligned_cols=146 Identities=14% Similarity=0.002 Sum_probs=69.8
Q ss_pred CCCEEEEEeCC-------CeEEEEECCCCcEEEEeCC-----C-C-ceEEEEecCCCEEEEEeCCC-----cEEEEEccc
Q 009993 153 SAKLLFTSGYD-------SIVRMWHLEDGFSIASSKP-----L-G-CTIRAVAADKKLLVAGGTDG-----FIHCWRAVE 213 (520)
Q Consensus 153 ~~~~l~sgs~d-------g~v~vwd~~~~~~~~~~~~-----~-~-~~v~~~~~~~~~l~sg~~dg-----~i~vwd~~~ 213 (520)
++.+++.|+.+ ..+.+||+.+.+-.. ... . . ........++.+.+.|+.++ .+.++|+.+
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~-~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t 253 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSI-SPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTT 253 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEe-CCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCC
Confidence 35566666643 246778887654321 111 1 0 11122335666777777653 467777765
Q ss_pred CcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCC-----eEEEEECCCCcEEEEee------eccCEEEE
Q 009993 214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDM-----TVRVWDRALLKCLKVLR------HSDWVYGL 282 (520)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg-----~v~iwd~~~~~~~~~~~------~~~~v~~~ 282 (520)
..-........ . ............++..++.|+.++ .+..||+.+.+-...-. ........
T Consensus 254 ~~W~~l~~~~~---~-----P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~ 325 (470)
T PLN02193 254 NEWKLLTPVEE---G-----PTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLE 325 (470)
T ss_pred CEEEEcCcCCC---C-----CCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEE
Confidence 43211110000 0 000111122233566666776543 46778877654322111 01111122
Q ss_pred eeCCCEEEEEc-C----CeEEEEECCCCee
Q 009993 283 APHDTTVASTS-G----SDVYIWDTNSGCL 307 (520)
Q Consensus 283 ~~~~~~l~~~~-d----~~i~iwd~~~~~~ 307 (520)
..++++++.++ + ..+.+||+.+.+-
T Consensus 326 ~~~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 326 VVQGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred EECCcEEEEECCCCCccCceEEEECCCCEE
Confidence 35666666665 4 4689999987653
No 468
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=81.20 E-value=55 Score=31.72 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=23.7
Q ss_pred cCcceeeEEEEecCC-EEEEecCCCeEEEEeCCc
Q 009993 420 HGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQ 452 (520)
Q Consensus 420 ~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~ 452 (520)
......+..++..|+ .+++-+.+..|.+|....
T Consensus 427 ~s~~~~i~~ls~gGdRlfv~rs~~~~v~vw~~~~ 460 (465)
T KOG2714|consen 427 PSAGGLIVRLSSGGDRLFVVRSVESPVTVWEVLE 460 (465)
T ss_pred cccCCcEEEEecCCeeEEEEEeccCceeEEEecC
Confidence 344456777888887 666677788899998764
No 469
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=80.81 E-value=0.49 Score=43.26 Aligned_cols=49 Identities=22% Similarity=0.202 Sum_probs=43.1
Q ss_pred ccCCCHHHHHHHccCCChhhhHHHhhhhhhHHHhhcCcchhhhhhhhhc
Q 009993 64 ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERW 112 (520)
Q Consensus 64 ~~~LP~el~~~i~~~L~~~~l~~~s~v~~~~~~~~~~~~lW~~~~~~~~ 112 (520)
+..||..++..++++++++.+.++++|+++..++.+...+|++.+...|
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l 56 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYL 56 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhccccccccccccc
Confidence 6778889999999999999999999999999999999999987543444
No 470
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=80.58 E-value=47 Score=34.61 Aligned_cols=67 Identities=10% Similarity=0.122 Sum_probs=43.6
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcE--EEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEc
Q 009993 142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS--IASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRA 211 (520)
Q Consensus 142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 211 (520)
..-++++.-+|.|+-++.++.||.|++|+...... +.+.... -..+...+.-|+++..|..+.-|.-
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p---~~nlv~tnhgl~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKP---KENLVFTNHGLVTATSDRRALAWKE 82 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCC---ccceeeeccceEEEeccchhheeec
Confidence 34567888889999999999999999999865543 2222111 1112223445677777777777754
No 471
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=80.31 E-value=60 Score=31.61 Aligned_cols=62 Identities=18% Similarity=0.049 Sum_probs=29.4
Q ss_pred CCCEEEEEeC-CCeEEEEECCCC----cEEEEeCC-CCceEEEEecCCCEEEEEeCCC-----------cEEEEEcccC
Q 009993 153 SAKLLFTSGY-DSIVRMWHLEDG----FSIASSKP-LGCTIRAVAADKKLLVAGGTDG-----------FIHCWRAVEV 214 (520)
Q Consensus 153 ~~~~l~sgs~-dg~v~vwd~~~~----~~~~~~~~-~~~~v~~~~~~~~~l~sg~~dg-----------~i~vwd~~~~ 214 (520)
++++.+.|+. +..+.++|+... ..+..+.. ..........++.+.+.|+.+. .+..||..+.
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n 116 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN 116 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC
Confidence 4555554443 445677777532 12222221 1111222335667777776542 3556666543
No 472
>PLN02153 epithiospecifier protein
Probab=79.82 E-value=58 Score=31.15 Aligned_cols=62 Identities=19% Similarity=0.180 Sum_probs=32.6
Q ss_pred CCCEEEEEeCC-------CeEEEEECCCCcEEEE--eCC-CCc---eEEEEecCCCEEEEEeCC-----CcEEEEEcccC
Q 009993 153 SAKLLFTSGYD-------SIVRMWHLEDGFSIAS--SKP-LGC---TIRAVAADKKLLVAGGTD-----GFIHCWRAVEV 214 (520)
Q Consensus 153 ~~~~l~sgs~d-------g~v~vwd~~~~~~~~~--~~~-~~~---~v~~~~~~~~~l~sg~~d-----g~i~vwd~~~~ 214 (520)
++.+++.|+.+ ..+.++|+.+.+-... ... ... .......++.+++.|+.+ ..+.++|..+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 111 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKN 111 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCC
Confidence 45666677653 2577888876543211 110 000 122233566777777754 24667776654
No 473
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=79.81 E-value=21 Score=34.11 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=34.0
Q ss_pred ceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeee-eeecCCcCCEEEEEecC
Q 009993 318 NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV-ATWIPHTGPVNSLAFEF 374 (520)
Q Consensus 318 ~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~-~~~~~h~~~v~~l~~~~ 374 (520)
..++|+|.|+|+++++ ...|.|++++ ..+.....+..+ ............++++|
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p 58 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHP 58 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-T
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceecc
Confidence 4578999999887665 5699999999 333211111111 11233456789999988
No 474
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=79.72 E-value=41 Score=33.51 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=38.1
Q ss_pred ccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeee-eec-CCcCCEEEEEecCCE
Q 009993 316 VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA-TWI-PHTGPVNSLAFEFPW 376 (520)
Q Consensus 316 ~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~-~~~-~h~~~v~~l~~~~~~ 376 (520)
-...+.|+|.|+|++|++--..|.|++++..+..... ...+. ... ...+....|+++|++
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~-~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKV-VFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceee-eecCCceeccCCCCceeeEEECCCc
Confidence 4567899999999888776557999999765442110 00111 111 135678899998764
No 475
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.30 E-value=44 Score=37.20 Aligned_cols=74 Identities=9% Similarity=0.003 Sum_probs=46.0
Q ss_pred ecCCcCCEEEEEe-cCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEE
Q 009993 360 WIPHTGPVNSLAF-EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVC 438 (520)
Q Consensus 360 ~~~h~~~v~~l~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s 438 (520)
+.-+..++.+..+ ++.-++.+..-+.+-+|+........... ..++.. ..++..+++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~-----~~~~~~~v~ 251 (993)
T KOG1983|consen 194 LSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYL-----------------PNGQLE-----SRDGSHFVS 251 (993)
T ss_pred ccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhcc-----------------cccccC-----ccCCceEEE
Confidence 3345556666655 45566666777778888765431111000 011111 566779999
Q ss_pred ecCCCeEEEEeCCchHh
Q 009993 439 GGEEGIVRIWNFSQAFE 455 (520)
Q Consensus 439 g~~Dg~v~iwd~~~~~~ 455 (520)
+..||.+.+||+..+..
T Consensus 252 ~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 252 YHTDGSYAFWDVSSGKL 268 (993)
T ss_pred EEecCCEEeeecCCCce
Confidence 99999999999998754
No 476
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.20 E-value=86 Score=34.02 Aligned_cols=79 Identities=19% Similarity=0.029 Sum_probs=42.1
Q ss_pred EEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCC
Q 009993 189 AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALL 267 (520)
Q Consensus 189 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~ 267 (520)
|+..-|+.++.|+.||.+.+|.+.+.....-.....+....... -+..+|..+.. ...-++-.-.|+.+.++++.+.
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~--~~kk~i~~l~~~~~~~~ll~l~dsqi~~~~l~~~ 98 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKE--FSKKPINKLLVCASLELLLILSDSQIAVHKLPEL 98 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhh--hccchhHHHhhcchhcchheecCCcceeeecCcc
Confidence 66677888999999999999887654211000000000000001 12456666655 2222333444677888887766
Q ss_pred cE
Q 009993 268 KC 269 (520)
Q Consensus 268 ~~ 269 (520)
+.
T Consensus 99 ~~ 100 (877)
T KOG2063|consen 99 EP 100 (877)
T ss_pred cc
Confidence 55
No 477
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=78.30 E-value=52 Score=29.77 Aligned_cols=139 Identities=19% Similarity=0.207 Sum_probs=0.0
Q ss_pred EEEEE-----cCCE-EEEEe-----cCCeEEEEECCCCcEEEEee-eccCEEEEe-----eCCCEEEEEcCCeEEEEECC
Q 009993 241 TSLAL-----DLTR-IYSGS-----WDMTVRVWDRALLKCLKVLR-HSDWVYGLA-----PHDTTVASTSGSDVYIWDTN 303 (520)
Q Consensus 241 ~~l~~-----~~~~-l~s~s-----~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~-----~~~~~l~~~~d~~i~iwd~~ 303 (520)
.|+++ ||.+ |+.+. .+..+++|.-.+......+. .+..|.++- |.-..++++++..|++| +
T Consensus 18 sC~~l~Dl~gDGd~kLvvaD~g~~~~~~kLKVykGt~l~~E~~L~d~P~ai~sFy~d~~ep~~P~iAVA~G~~vyiY--k 95 (257)
T PF14779_consen 18 SCMALADLQGDGDYKLVVADLGTGDQNMKLKVYKGTSLISEITLPDLPSAIVSFYMDEHEPRTPAIAVAAGPSVYIY--K 95 (257)
T ss_pred ceeEeeecCCCCeEEEEEEecCCcCCCceEEEEcCCChhhcccccCCCeEEEEEeccCCCCCCCeEEEEeCCEEEEE--e
Q ss_pred CCeeeEEeecc--------------------------------------------------------------------c
Q 009993 304 SGCLLTVVNGA--------------------------------------------------------------------H 315 (520)
Q Consensus 304 ~~~~~~~~~~~--------------------------------------------------------------------~ 315 (520)
+.++..++.-+ +
T Consensus 96 NlkP~yKftlP~~~~~~~E~eiW~~~~~~~i~~~~l~~~L~~lr~~~~~~LS~rSl~~L~l~~ee~~~fi~~~k~~pl~~ 175 (257)
T PF14779_consen 96 NLKPFYKFTLPPLEINPLEQEIWQQLREGKIDPETLKEMLESLRDIAGVKLSPRSLRFLQLDPEEREAFIERYKDSPLKR 175 (257)
T ss_pred cccceeeecCCCCCCCHHHHHHHHhcccCCCCHHHHHHHHHHHhhccCCccCHHHHHHHCCCHHHHHHHHHHHhcCCccc
Q ss_pred ccceEEEEecCCCC-------EEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC------CEEEEEeC
Q 009993 316 VGNTKSLARSHTGD-------FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF------PWLVSAAG 382 (520)
Q Consensus 316 ~~~i~~l~~s~~~~-------~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~------~~l~s~s~ 382 (520)
...|+||+--.... .|+.|.++|.|+|.|.... ..+....-..-++ .+...+ -.|+.++.
T Consensus 176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af------~il~~~~lpsvPv-~i~~~G~~devdyRI~Va~R 248 (257)
T PF14779_consen 176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAF------TILKQVQLPSVPV-FISVSGQYDEVDYRIVVACR 248 (257)
T ss_pred CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhh------eeEEEEecCCCce-EEEEEeeeeccceEEEEEeC
Q ss_pred CCcEEE
Q 009993 383 DGKLSL 388 (520)
Q Consensus 383 dg~i~v 388 (520)
||.|++
T Consensus 249 dg~iy~ 254 (257)
T PF14779_consen 249 DGKIYT 254 (257)
T ss_pred CCEEEE
No 478
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=77.21 E-value=9.1 Score=21.58 Aligned_cols=25 Identities=28% Similarity=0.210 Sum_probs=15.7
Q ss_pred CEEEEEecCCeEEEEECCCCcEEEE
Q 009993 248 TRIYSGSWDMTVRVWDRALLKCLKV 272 (520)
Q Consensus 248 ~~l~s~s~dg~v~iwd~~~~~~~~~ 272 (520)
..++.++.+|.+..+|.++|+.+..
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEE
Confidence 3566666667777777766665543
No 479
>PRK13684 Ycf48-like protein; Provisional
Probab=76.39 E-value=73 Score=30.43 Aligned_cols=242 Identities=11% Similarity=-0.034 Sum_probs=0.0
Q ss_pred cccHHHhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC----CCCceEEEEecCCCEEEEEeCC
Q 009993 128 DKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK----PLGCTIRAVAADKKLLVAGGTD 203 (520)
Q Consensus 128 ~~~W~~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~l~sg~~d 203 (520)
.+.|......+......+.++.|.++. ...++..+.|..-+ +.|+.-.... ........+..++..+..++..
T Consensus 75 G~tW~~~~~~~~~~~~~l~~v~~~~~~--~~~~G~~g~i~~S~-DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~ 151 (334)
T PRK13684 75 GETWEERSLDLPEENFRLISISFKGDE--GWIVGQPSLLLHTT-DGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNV 151 (334)
T ss_pred CCCceECccCCcccccceeeeEEcCCc--EEEeCCCceEEEEC-CCCCCCeEccCCcCCCCCceEEEEECCCcceeeecc
Q ss_pred CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEee--eccCEE
Q 009993 204 GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVY 280 (520)
Q Consensus 204 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~ 280 (520)
|.|..=+ ..-..-.....+-.+.+.++.+ .+..++..+..|.+..-.-..++...... ....++
T Consensus 152 G~i~~S~-------------DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~ 218 (334)
T PRK13684 152 GAIYRTT-------------DGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQ 218 (334)
T ss_pred ceEEEEC-------------CCCCCceeCcCCCcceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccce
Q ss_pred EEe--eCCCEEEEEcCCeEEEEECCCCeeeEEeecc---cccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcccccee
Q 009993 281 GLA--PHDTTVASTSGSDVYIWDTNSGCLLTVVNGA---HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVL 355 (520)
Q Consensus 281 ~~~--~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~ 355 (520)
++. ++++.++++..|.+++=....+..-.....+ ....+..+.+.|++..+++| .+|.+. .....+ ....
T Consensus 219 ~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G---~tW~ 293 (334)
T PRK13684 219 SMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGG---KTWE 293 (334)
T ss_pred eeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCC---CCCe
Q ss_pred eeeeecCCcCCEEEEEe-cCCEEEEEeCCCcEEEEe
Q 009993 356 LVATWIPHTGPVNSLAF-EFPWLVSAAGDGKLSLID 390 (520)
Q Consensus 356 ~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~vwd 390 (520)
.+.....-....+.+.| +++..+..+..|.|-.|+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 294 KDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYV 329 (334)
T ss_pred ECCcCCCCCcceEEEEEeCCCceEEECCCceEEEec
No 480
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=74.95 E-value=18 Score=35.04 Aligned_cols=153 Identities=15% Similarity=0.107 Sum_probs=86.4
Q ss_pred EeeCCCEEEEEcCCeEEEEECCCCeeeE-Eeeccccc----ceE-EEEecCCCCEEEEEeCCCeEEEE-EcccCccccce
Q 009993 282 LAPHDTTVASTSGSDVYIWDTNSGCLLT-VVNGAHVG----NTK-SLARSHTGDFLFTGGEDGAIHMY-EIINDCTEANV 354 (520)
Q Consensus 282 ~~~~~~~l~~~~d~~i~iwd~~~~~~~~-~~~~~~~~----~i~-~l~~s~~~~~l~tg~~dg~i~iw-d~~~~~~~~~~ 354 (520)
+.|+++.++.-+...+.++++.+..... ++.....+ .|+ .+..-..|..+.+++.||-|.-| |++.+.. ...
T Consensus 228 L~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~-p~l 306 (733)
T COG4590 228 LTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQ-PHL 306 (733)
T ss_pred ECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCC-Ccc
Confidence 3499999999888999999887653321 11111111 122 12222356678889999998776 5554422 112
Q ss_pred eeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEec
Q 009993 355 LLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG 432 (520)
Q Consensus 355 ~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 432 (520)
..++.++-...++..+.-+. +-+++-+.+|++.++...... .....--.....+.++++.
T Consensus 307 ~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~------------------~lL~~~~~~~~~~~~~Sp~ 368 (733)
T COG4590 307 NHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEK------------------LLLFERAYQAPQLVAMSPN 368 (733)
T ss_pred eeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCc------------------ceehhhhhcCcceeeeCcc
Confidence 22232222233444443322 467777788888777644311 0000011124556778888
Q ss_pred CCEEEEecCCCeEEEEeCCchH
Q 009993 433 ADRIVCGGEEGIVRIWNFSQAF 454 (520)
Q Consensus 433 ~~~l~sg~~Dg~v~iwd~~~~~ 454 (520)
++++++-.. |.++++.+++..
T Consensus 369 ~~~Ll~e~~-gki~~~~l~Nr~ 389 (733)
T COG4590 369 QAYLLSEDQ-GKIRLAQLENRN 389 (733)
T ss_pred cchheeecC-CceEEEEecCCC
Confidence 888887654 679999988653
No 481
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=74.94 E-value=71 Score=35.43 Aligned_cols=139 Identities=12% Similarity=0.057 Sum_probs=83.6
Q ss_pred CEEEEEec---------CCeEEEEECCC-----C-----cEEEEee---eccCEEEEeeCCCEEEEEcCCeEEEEECC-C
Q 009993 248 TRIYSGSW---------DMTVRVWDRAL-----L-----KCLKVLR---HSDWVYGLAPHDTTVASTSGSDVYIWDTN-S 304 (520)
Q Consensus 248 ~~l~s~s~---------dg~v~iwd~~~-----~-----~~~~~~~---~~~~v~~~~~~~~~l~~~~d~~i~iwd~~-~ 304 (520)
.+|++|.. -|.+.++|+-. + ..++.+. ..++|..++.-..+++++.+.+|.+|+++ .
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~GqKI~v~~l~r~ 1126 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQGQKIIVRKLDRD 1126 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEeccEEEEccCcEEEEEEeccC
Confidence 46777643 38899999632 2 2223322 77899999977778888889999999994 3
Q ss_pred CeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCC--cCCEEEEEe--cC--CEEE
Q 009993 305 GCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH--TGPVNSLAF--EF--PWLV 378 (520)
Q Consensus 305 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~--~~--~~l~ 378 (520)
...+-.-. -.-+++-....--.++|+.|.--..|.+.-..... ..+..+... .-.++++.| ++ -.++
T Consensus 1127 ~~ligVaF--iD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep-----~rlsL~srd~~~l~v~s~EFLVdg~~L~fl 1199 (1366)
T KOG1896|consen 1127 SELIGVAF--IDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEP-----YRLSLLSRDFEPLNVYSTEFLVDGSNLSFL 1199 (1366)
T ss_pred CcceeeEE--eccceeEEehhhhhhheehhhhhhceEEEEEccCc-----eEEEEeecCCchhhceeeeeEEcCCeeEEE
Confidence 33322211 11222222222235677777776777777665542 122222222 224666777 44 3788
Q ss_pred EEeCCCcEEEEeCCc
Q 009993 379 SAAGDGKLSLIDVRK 393 (520)
Q Consensus 379 s~s~dg~i~vwd~~~ 393 (520)
++..|+.|.++-...
T Consensus 1200 vsDa~rNi~vy~Y~P 1214 (1366)
T KOG1896|consen 1200 VSDADRNIHVYMYAP 1214 (1366)
T ss_pred EEcCCCcEEEEEeCC
Confidence 899999999886653
No 482
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=74.71 E-value=92 Score=30.75 Aligned_cols=194 Identities=12% Similarity=0.023 Sum_probs=99.9
Q ss_pred EEEEccCCCEEEEEeCCC-----------eEEEEECCCCcEE--EEeCC--CCc--eEEEEecCCCEEEEEeCC----Cc
Q 009993 147 TVFVLASAKLLFTSGYDS-----------IVRMWHLEDGFSI--ASSKP--LGC--TIRAVAADKKLLVAGGTD----GF 205 (520)
Q Consensus 147 ~l~~~~~~~~l~sgs~dg-----------~v~vwd~~~~~~~--~~~~~--~~~--~v~~~~~~~~~l~sg~~d----g~ 205 (520)
.+.|.++++.|+....+. .|+.|.+.+...- ..+.. ... .-...+.++++++..+.. ..
T Consensus 174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~ 253 (414)
T PF02897_consen 174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESE 253 (414)
T ss_dssp EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEE
T ss_pred eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCe
Confidence 389999988776655433 3788888776432 33332 222 123345888887654433 23
Q ss_pred EEEEEcccCcceeeeccCCccccceEEeccCC-CCeEEEEEcCCEEEEEec----CCeEEEEECCCCcE---E-EEeeec
Q 009993 206 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE-GPITSLALDLTRIYSGSW----DMTVRVWDRALLKC---L-KVLRHS 276 (520)
Q Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~l~s~s~----dg~v~iwd~~~~~~---~-~~~~~~ 276 (520)
+.+.++..+. ........+.... +....+...++.++.-+. ++.|...++..... . ..+.+.
T Consensus 254 v~~~d~~~~~---------~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~ 324 (414)
T PF02897_consen 254 VYLLDLDDGG---------SPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED 324 (414)
T ss_dssp EEEEECCCTT---------TSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S
T ss_pred EEEEeccccC---------CCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC
Confidence 5666655420 0011222233333 333444445554443332 35777778876652 2 223344
Q ss_pred c--CEEEEeeCCCEEEEEc--C--CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEE--EeC--CCeEEEEEcc
Q 009993 277 D--WVYGLAPHDTTVASTS--G--SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFT--GGE--DGAIHMYEII 346 (520)
Q Consensus 277 ~--~v~~~~~~~~~l~~~~--d--~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~t--g~~--dg~i~iwd~~ 346 (520)
. .+..+...+..|+... + ..|+++|+..+.....+...-.+.|..+...++++.+.. .+. -+++..||+.
T Consensus 325 ~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~ 404 (414)
T PF02897_consen 325 EDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLA 404 (414)
T ss_dssp SSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETT
T ss_pred CceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence 4 4667776665555544 4 459999999444444444334555667766666654332 222 3567778887
Q ss_pred cCc
Q 009993 347 NDC 349 (520)
Q Consensus 347 ~~~ 349 (520)
+++
T Consensus 405 t~~ 407 (414)
T PF02897_consen 405 TGE 407 (414)
T ss_dssp TTC
T ss_pred CCC
Confidence 773
No 483
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.87 E-value=47 Score=36.50 Aligned_cols=139 Identities=9% Similarity=0.032 Sum_probs=76.2
Q ss_pred cCCCEEEE--EeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC---CEEEEEecCCeEEEEECCC
Q 009993 192 ADKKLLVA--GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL---TRIYSGSWDMTVRVWDRAL 266 (520)
Q Consensus 192 ~~~~~l~s--g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~v~iwd~~~ 266 (520)
+|+...++ .+.+-.|..+|+++-....+... ..............-..++.|++ ...+....|+.|++..+..
T Consensus 110 ~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~--~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~ 187 (1405)
T KOG3630|consen 110 HDATDSVVVSTSNGEAVYSFDLEEFSESRYETT--VPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQ 187 (1405)
T ss_pred cCCceEEEEEecCCceEEEEehHhhhhhhhhhc--cccccccchhccccccccccccCCccchhhhhccccchhhhhhhh
Confidence 56554333 33344788899876432111000 00000001111223344555655 3466777888888887653
Q ss_pred C-cEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeec---ccccceEEEEecCCCCEEEE
Q 009993 267 L-KCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG---AHVGNTKSLARSHTGDFLFT 333 (520)
Q Consensus 267 ~-~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~---~~~~~i~~l~~s~~~~~l~t 333 (520)
. .....+.....++++. +.|+.+++|. .|++.-|-..-. ....+.. .....|.+++|-....++++
T Consensus 188 ~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 188 LAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 2 2223344555566665 8899999999 788888875432 2222221 12467899999877776664
No 484
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=73.82 E-value=11 Score=20.61 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=22.3
Q ss_pred CEEEEEecCCEEEEEeCCCcEEEEe
Q 009993 366 PVNSLAFEFPWLVSAAGDGKLSLID 390 (520)
Q Consensus 366 ~v~~l~~~~~~l~s~s~dg~i~vwd 390 (520)
.|.+++..+.+++.+..-+.+|+|.
T Consensus 3 ~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeEEecC
Confidence 5788999999999999999999973
No 485
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=73.57 E-value=8.2 Score=39.89 Aligned_cols=40 Identities=28% Similarity=0.473 Sum_probs=30.1
Q ss_pred ccEEEEEEcc----CCCEEEEEeCCCeEEEEECCCCcEEEEeCC
Q 009993 143 EAVLTVFVLA----SAKLLFTSGYDSIVRMWHLEDGFSIASSKP 182 (520)
Q Consensus 143 ~~V~~l~~~~----~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~ 182 (520)
+.+..++.++ +..+|++-+.|+++|+||+.++.++.+..-
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEET
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEecc
Confidence 4556666666 678999999999999999999999776543
No 486
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=73.07 E-value=80 Score=29.35 Aligned_cols=213 Identities=12% Similarity=0.122 Sum_probs=113.0
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEECC------CCc-EEEEeCC---------CCceEE----EE--ec----CCCEEE
Q 009993 145 VLTVFVLASAKLLFTSGYDSIVRMWHLE------DGF-SIASSKP---------LGCTIR----AV--AA----DKKLLV 198 (520)
Q Consensus 145 V~~l~~~~~~~~l~sgs~dg~v~vwd~~------~~~-~~~~~~~---------~~~~v~----~~--~~----~~~~l~ 198 (520)
-+.|+++|.+.+-++....+...+||.. ..+ .+-++.. .+..|. .+ .. ....++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 3688999999888887788999999986 122 2223321 011111 11 11 123478
Q ss_pred EEeCCCcEEEEEcccCcceeeeccCCccccceEEec-cCCCCe-EEEEE----cCCEEEEEe-cCCeEEEEECCCCcEEE
Q 009993 199 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW-EHEGPI-TSLAL----DLTRIYSGS-WDMTVRVWDRALLKCLK 271 (520)
Q Consensus 199 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v-~~l~~----~~~~l~s~s-~dg~v~iwd~~~~~~~~ 271 (520)
.+++||+|.-|...-+.... ......+. +..+.| ..+++ .+++|+.+. ..++|.++|-.-.+...
T Consensus 105 f~tEdGTisaW~p~v~~t~~--------~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~ 176 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRM--------TRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL 176 (336)
T ss_pred EEeCCceEEeecCcCCcccc--------cccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC
Confidence 88999999999843221100 00111111 112233 23444 245665554 46888888854222110
Q ss_pred --Eeeec-----cCEEEEe-eCCCEEE-------------EEc-CCeEEEEECCCCeeeEEee-cccccceEEEEecC--
Q 009993 272 --VLRHS-----DWVYGLA-PHDTTVA-------------STS-GSDVYIWDTNSGCLLTVVN-GAHVGNTKSLARSH-- 326 (520)
Q Consensus 272 --~~~~~-----~~v~~~~-~~~~~l~-------------~~~-d~~i~iwd~~~~~~~~~~~-~~~~~~i~~l~~s~-- 326 (520)
.+..+ -.-..+. ..+++++ .+. -|.|-+||+. |..++++. .+.-...+.|+..|
T Consensus 177 ~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~ 255 (336)
T TIGR03118 177 PGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPES 255 (336)
T ss_pred CCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhh
Confidence 01000 0001111 1222222 222 4679999975 55565553 34455667777765
Q ss_pred ----CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcC------CEEEEEe
Q 009993 327 ----TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG------PVNSLAF 372 (520)
Q Consensus 327 ----~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~------~v~~l~~ 372 (520)
.+.+|+----||+|..||..++ ..+..+....+ ..+.|.|
T Consensus 256 FG~~sg~lLVGNFGDG~InaFD~~sG------~~~g~L~~~~G~pi~i~GLWgL~f 305 (336)
T TIGR03118 256 FGSLSGALLVGNFGDGTINAYDPQSG------AQLGQLLDPDNHPVKVDGLWSLTF 305 (336)
T ss_pred hCCCCCCeEEeecCCceeEEecCCCC------ceeeeecCCCCCeEEecCeEEeee
Confidence 5677777677999999999888 44444443332 3466666
No 487
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=73.03 E-value=11 Score=21.23 Aligned_cols=26 Identities=8% Similarity=0.087 Sum_probs=20.8
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEe
Q 009993 155 KLLFTSGYDSIVRMWHLEDGFSIASS 180 (520)
Q Consensus 155 ~~l~sgs~dg~v~vwd~~~~~~~~~~ 180 (520)
..++.++.+|.+..+|..+|+.+..+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 36778888999999999888876543
No 488
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=72.28 E-value=20 Score=37.06 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=24.9
Q ss_pred ceEEEEecC----CCCEEEEEeCCCeEEEEEcccCcc
Q 009993 318 NTKSLARSH----TGDFLFTGGEDGAIHMYEIINDCT 350 (520)
Q Consensus 318 ~i~~l~~s~----~~~~l~tg~~dg~i~iwd~~~~~~ 350 (520)
.+..++.++ +..++++-+.|+++|+||+.++..
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 345555555 678999999999999999999843
No 489
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=72.19 E-value=0.43 Score=46.06 Aligned_cols=132 Identities=17% Similarity=0.223 Sum_probs=83.5
Q ss_pred cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEE-EEEc-CCeEEEEECCCCeeeE-EeecccccceE
Q 009993 246 DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTV-ASTS-GSDVYIWDTNSGCLLT-VVNGAHVGNTK 320 (520)
Q Consensus 246 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l-~~~~-d~~i~iwd~~~~~~~~-~~~~~~~~~i~ 320 (520)
.+..++.++.+..+..||-. ++.......+.....++ .++..+ +.+. .+.+.+||+.+..... .....|....
T Consensus 45 e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl- 122 (615)
T KOG2247|consen 45 EGHNLAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL- 122 (615)
T ss_pred CCCceehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH-
Confidence 44447777778888888853 33333333333333333 233333 3344 7899999997653211 1111122222
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-CEEEEEeCCCcE
Q 009993 321 SLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKL 386 (520)
Q Consensus 321 ~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i 386 (520)
+.|++.+..++.|...|.+.|++..+. ..+.....|...++++++.+ ++.+.++.|..+
T Consensus 123 -l~wsKg~~el~ig~~~gn~viynhgts------R~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L 182 (615)
T KOG2247|consen 123 -LAWSKGTPELVIGNNAGNIVIYNHGTS------RRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTL 182 (615)
T ss_pred -HhhccCCccccccccccceEEEeccch------hhhhhhcccccceeEEEecccceeeecCcHHHH
Confidence 678998889999989999999998877 44545555889999999976 566666665433
No 490
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=72.12 E-value=12 Score=22.14 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=12.6
Q ss_pred EEEEecCCeEEEEECCCCcEEEEee
Q 009993 250 IYSGSWDMTVRVWDRALLKCLKVLR 274 (520)
Q Consensus 250 l~s~s~dg~v~iwd~~~~~~~~~~~ 274 (520)
++.++.||.|.-.|.++|+.+..+.
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCCEEEeee
Confidence 3444555555555555555544443
No 491
>PLN02193 nitrile-specifier protein
Probab=71.87 E-value=1.2e+02 Score=30.72 Aligned_cols=145 Identities=12% Similarity=0.068 Sum_probs=72.2
Q ss_pred EEcCCEEEEEecC-----CeEEEEECCCCcEEEEeee---ccC--EEEE-eeCCCEEEEEc-C-----CeEEEEECCCCe
Q 009993 244 ALDLTRIYSGSWD-----MTVRVWDRALLKCLKVLRH---SDW--VYGL-APHDTTVASTS-G-----SDVYIWDTNSGC 306 (520)
Q Consensus 244 ~~~~~~l~s~s~d-----g~v~iwd~~~~~~~~~~~~---~~~--v~~~-~~~~~~l~~~~-d-----~~i~iwd~~~~~ 306 (520)
..++...+.|+.+ ..+..||+.+.+-...-.. +.+ -.++ ..++++++.|+ + ..+..||+.+.+
T Consensus 226 ~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~ 305 (470)
T PLN02193 226 SIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKK 305 (470)
T ss_pred EECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCE
Confidence 3466666677654 3578889877543322111 111 1122 24555555555 3 347788887754
Q ss_pred eeEEeec----ccccceEEEEecCCCCEEEEEeCC----CeEEEEEcccCccccceeeeeee---cCCcCCEEEEEecCC
Q 009993 307 LLTVVNG----AHVGNTKSLARSHTGDFLFTGGED----GAIHMYEIINDCTEANVLLVATW---IPHTGPVNSLAFEFP 375 (520)
Q Consensus 307 ~~~~~~~----~~~~~i~~l~~s~~~~~l~tg~~d----g~i~iwd~~~~~~~~~~~~~~~~---~~h~~~v~~l~~~~~ 375 (520)
-...-.. ...... .++. -++++++.|+.+ ..+.+||+.+..- ..+... ........++.++..
T Consensus 306 W~~~~~~~~~~~~R~~~-~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W----~~~~~~g~~P~~R~~~~~~~~~~~ 379 (470)
T PLN02193 306 WFHCSTPGDSFSIRGGA-GLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKW----TQVETFGVRPSERSVFASAAVGKH 379 (470)
T ss_pred EEeCCCCCCCCCCCCCc-EEEE-ECCcEEEEECCCCCccCceEEEECCCCEE----EEeccCCCCCCCcceeEEEEECCE
Confidence 2211100 001111 1222 256777777765 4588999877621 111111 011112234455667
Q ss_pred EEEEEeCC--------------CcEEEEeCCcc
Q 009993 376 WLVSAAGD--------------GKLSLIDVRKL 394 (520)
Q Consensus 376 ~l~s~s~d--------------g~i~vwd~~~~ 394 (520)
+++.|+.+ ..+.++|+.+.
T Consensus 380 iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~ 412 (470)
T PLN02193 380 IVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL 412 (470)
T ss_pred EEEECCccCCccccccCccceeccEEEEEcCcC
Confidence 77777753 24778888764
No 492
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=71.71 E-value=19 Score=21.55 Aligned_cols=23 Identities=9% Similarity=0.278 Sum_probs=17.2
Q ss_pred CCCCEEEEEe-CCCeEEEEEcccC
Q 009993 326 HTGDFLFTGG-EDGAIHMYEIIND 348 (520)
Q Consensus 326 ~~~~~l~tg~-~dg~i~iwd~~~~ 348 (520)
|++++|+++. .++.|.++|..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~ 24 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATN 24 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC
Confidence 5677666654 5789999999777
No 493
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=70.81 E-value=1.1e+02 Score=29.79 Aligned_cols=191 Identities=13% Similarity=0.148 Sum_probs=103.0
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEE----EecCCCE--EEEEeC-C---CcEEEEEcccCcceeeec
Q 009993 152 ASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRA----VAADKKL--LVAGGT-D---GFIHCWRAVEVLPHLFDI 221 (520)
Q Consensus 152 ~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~----~~~~~~~--l~sg~~-d---g~i~vwd~~~~~~~~~~~ 221 (520)
|...+++....++-+.+||+. |+.+..+..-...-.. +..++.. |+.++. + .+|++|.+......+..+
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence 456788888889999999986 5566666422221112 2334443 344443 2 469999875322122111
Q ss_pred cCCccccceEEeccCCCCeEEEEE--c---CC-EEEEEecCCeEEEEECC---CC----cEEEEeeeccCEEEEe--eCC
Q 009993 222 SGSEKQNTQFRLWEHEGPITSLAL--D---LT-RIYSGSWDMTVRVWDRA---LL----KCLKVLRHSDWVYGLA--PHD 286 (520)
Q Consensus 222 ~~~~~~~~~~~~~~h~~~v~~l~~--~---~~-~l~s~s~dg~v~iwd~~---~~----~~~~~~~~~~~v~~~~--~~~ 286 (520)
..... .+..-...+..+|+ + +. +++....+|.+..|.+. .+ +.++.+.....+..+. ...
T Consensus 145 ~~~~~-----p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~ 219 (381)
T PF02333_consen 145 TDPAA-----PIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDET 219 (381)
T ss_dssp CBTTC------EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTT
T ss_pred CCCCc-----ccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEeccc
Confidence 11100 01112245677777 2 33 57778889988888764 23 4566676666676665 344
Q ss_pred CEEEEEc-CCeEEEEECCCC-----eeeEEeec-ccccceEEEEec--CCC-CEEEEE-eCCCeEEEEEcccC
Q 009993 287 TTVASTS-GSDVYIWDTNSG-----CLLTVVNG-AHVGNTKSLARS--HTG-DFLFTG-GEDGAIHMYEIIND 348 (520)
Q Consensus 287 ~~l~~~~-d~~i~iwd~~~~-----~~~~~~~~-~~~~~i~~l~~s--~~~-~~l~tg-~~dg~i~iwd~~~~ 348 (520)
..|+.+. +.-|.-|+.+.. +.+..... .....+..|++- +++ .+|+++ -.+++..+|+....
T Consensus 220 g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 220 GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 5777777 777888887632 22222221 234567777764 343 355544 44778999997754
No 494
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=69.44 E-value=87 Score=28.25 Aligned_cols=150 Identities=10% Similarity=0.064 Sum_probs=72.0
Q ss_pred EEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC-C--CeEEEEEcccCccccceeee-eeecCCcCCEEEEEe
Q 009993 297 VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-D--GAIHMYEIINDCTEANVLLV-ATWIPHTGPVNSLAF 372 (520)
Q Consensus 297 i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~-d--g~i~iwd~~~~~~~~~~~~~-~~~~~h~~~v~~l~~ 372 (520)
-.+||+.+++... +......-+.+-.+-+||++|.+|+. + ..+++|+............. ..+....---+....
T Consensus 48 s~~yD~~tn~~rp-l~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRP-LTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEe-ccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 4689998876432 22223333444457789999999876 3 34888886541100000000 011111111122222
Q ss_pred -cCCEEEEEeCCC-cEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeC
Q 009993 373 -EFPWLVSAAGDG-KLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNF 450 (520)
Q Consensus 373 -~~~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~ 450 (520)
+++.|+.|+.+. +..+|.-... ......+.-+..........--+..-+.++|++++.+..++ .|||.
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~--------~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~ 196 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGP--------GPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDY 196 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccC--------CCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeC
Confidence 567777777663 2334433211 00000000000000111223345667888999888888765 55687
Q ss_pred CchHhHH
Q 009993 451 SQAFEIE 457 (520)
Q Consensus 451 ~~~~~~~ 457 (520)
.+...++
T Consensus 197 ~~n~v~~ 203 (243)
T PF07250_consen 197 KTNTVVR 203 (243)
T ss_pred CCCeEEe
Confidence 7664433
No 495
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=69.03 E-value=78 Score=29.29 Aligned_cols=97 Identities=18% Similarity=0.264 Sum_probs=60.3
Q ss_pred CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEe------CCCeEEEEEcccCccccceeeeeeecC-----C
Q 009993 295 SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG------EDGAIHMYEIINDCTEANVLLVATWIP-----H 363 (520)
Q Consensus 295 ~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~------~dg~i~iwd~~~~~~~~~~~~~~~~~~-----h 363 (520)
..|++||..+.+-...- .+-.+.|+.+.|..+.++++.|. ....+..||+.+.. ...+.+ -
T Consensus 16 ~~lC~yd~~~~qW~~~g-~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-------w~~~~~~~s~~i 87 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPG-NGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-------WSSLGGGSSNSI 87 (281)
T ss_pred CEEEEEECCCCEeecCC-CCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-------eeecCCcccccC
Confidence 45889998776544333 24678899999986666676664 35568889987762 222222 2
Q ss_pred cCCEEEEEe---cC-CEEEEEe-CC--CcEEEEeCCcccccCC
Q 009993 364 TGPVNSLAF---EF-PWLVSAA-GD--GKLSLIDVRKLLRSGR 399 (520)
Q Consensus 364 ~~~v~~l~~---~~-~~l~s~s-~d--g~i~vwd~~~~~~~~~ 399 (520)
.++|+.+.+ +. +..++|. .+ ..|..||=.+......
T Consensus 88 pgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~ 130 (281)
T PF12768_consen 88 PGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGS 130 (281)
T ss_pred CCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccc
Confidence 468888888 33 3444443 33 3477787766554443
No 496
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=66.88 E-value=14 Score=22.08 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=16.3
Q ss_pred ecCCCEEEEEeCCCcEEEEEcc
Q 009993 191 AADKKLLVAGGTDGFIHCWRAV 212 (520)
Q Consensus 191 ~~~~~~l~sg~~dg~i~vwd~~ 212 (520)
...+..++.++.||.+..+|.+
T Consensus 18 ~v~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 18 AVAGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp EECTSEEEEE-TTSEEEEEETT
T ss_pred EEECCEEEEEcCCCEEEEEeCC
Confidence 3456788888999999888864
No 497
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=66.45 E-value=1.3e+02 Score=29.16 Aligned_cols=188 Identities=15% Similarity=0.110 Sum_probs=99.0
Q ss_pred CCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEE-EcCCEEEEEecCCeEEEEECCCCcEEEE
Q 009993 194 KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLA-LDLTRIYSGSWDMTVRVWDRALLKCLKV 272 (520)
Q Consensus 194 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 272 (520)
+..++++..+|.|.-.|..++... +... ..+....+.+-. .....++.++.++.+..+|.++++.+..
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~-W~~~----------~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~ 136 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVK-WSYP----------LLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWS 136 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEE-eccc----------CcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEE
Confidence 445666678888888887776421 1000 000001111111 1345588899999999999999998888
Q ss_pred eeeccC---EEEEeeCCCEEEEE-cCCeEEEEECCCCeeeEEeeccc--ccceEEEEecCCCCEEEEEeC--CCeEEEEE
Q 009993 273 LRHSDW---VYGLAPHDTTVAST-SGSDVYIWDTNSGCLLTVVNGAH--VGNTKSLARSHTGDFLFTGGE--DGAIHMYE 344 (520)
Q Consensus 273 ~~~~~~---v~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~--~~~i~~l~~s~~~~~l~tg~~--dg~i~iwd 344 (520)
...... ..........+..+ .++.+...|..+|+........- ...+..-.. .....++.+.. ++.+.-.|
T Consensus 137 ~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~ 215 (370)
T COG1520 137 RNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALN 215 (370)
T ss_pred EecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEE
Confidence 874441 11122445555555 47999999999998877754211 111111001 12344555555 66677777
Q ss_pred cccCccccceeeeeeecCCcCCEEEEEe------cCCEEEEEeCCCcEEEEeCCcc
Q 009993 345 IINDCTEANVLLVATWIPHTGPVNSLAF------EFPWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~------~~~~l~s~s~dg~i~vwd~~~~ 394 (520)
..++....+.+..... +......--.+ ...-+..++.++.+...|..++
T Consensus 216 ~~~G~~~w~~~~~~~~-~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G 270 (370)
T COG1520 216 AEDGTLKWSQKVSQTI-GRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTG 270 (370)
T ss_pred ccCCcEeeeeeeeccc-CcccccccccccCceEEECCcEEEEecCCeEEEEEcCCC
Confidence 7777432221111111 11100000111 1234467777787877777765
No 498
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=66.02 E-value=1.4e+02 Score=29.35 Aligned_cols=144 Identities=15% Similarity=0.151 Sum_probs=74.8
Q ss_pred eCCCEEEEEcCCeEEE-EECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec-
Q 009993 284 PHDTTVASTSGSDVYI-WDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI- 361 (520)
Q Consensus 284 ~~~~~l~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~- 361 (520)
+++.+++.+..|.+.. ||.-. ..-..........++++.+.+++..++++ .+|.+.. ....+.... ........
T Consensus 248 ~dG~~~~vg~~G~~~~s~d~G~-~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~-~~~f~~~~~ 323 (398)
T PLN00033 248 PDGDYVAVSSRGNFYLTWEPGQ-PYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEE-DFDFEEADI 323 (398)
T ss_pred CCCCEEEEECCccEEEecCCCC-cceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccc-ccceeeccc
Confidence 6777888877665443 33221 11122222345678899999998887766 5666543 333331100 00111111
Q ss_pred -CCcCCEEEEEec-CCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC-CEEEE
Q 009993 362 -PHTGPVNSLAFE-FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA-DRIVC 438 (520)
Q Consensus 362 -~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s 438 (520)
.....++++.|. ...++.++.+|.+....-... .-. .......-....+.+.+.+ +....
T Consensus 324 ~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~-tW~----------------~~~~~~~~~~~ly~v~f~~~~~g~~ 386 (398)
T PLN00033 324 KSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGK-SWK----------------RDKGADNIAANLYSVKFFDDKKGFV 386 (398)
T ss_pred CCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCc-cee----------------EccccCCCCcceeEEEEcCCCceEE
Confidence 112358888885 467888888887777643211 000 0000011123445666533 56666
Q ss_pred ecCCCeEEEE
Q 009993 439 GGEEGIVRIW 448 (520)
Q Consensus 439 g~~Dg~v~iw 448 (520)
.|.+|.|--|
T Consensus 387 ~G~~G~il~~ 396 (398)
T PLN00033 387 LGNDGVLLRY 396 (398)
T ss_pred EeCCcEEEEe
Confidence 7778887655
No 499
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=65.71 E-value=1.6e+02 Score=29.97 Aligned_cols=145 Identities=16% Similarity=0.098 Sum_probs=74.3
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCC-ceEEEEe-cCCCEEEEEeCCCcEEEEEcccCcceee
Q 009993 142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-CTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLF 219 (520)
Q Consensus 142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~-~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 219 (520)
..+|..+.++..|. +..|+.|| +..||..+++.+..-.+.. ..|.++. .-...+..|+.+| |.+.+.+....
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqG-v~~~e~~G~~~--- 237 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTDQG-VYLQEAEGWRA--- 237 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEeccc-eEEEchhhccc---
Confidence 35677888877774 67788888 6777887777665443332 4455544 3355678888777 44554432100
Q ss_pred eccCCccccceEEeccCCCCeEEEEEcC-CEEEEEecCCeEEEEECCCCcEEEEee---eccCEEEEe--eCCCEEEEEc
Q 009993 220 DISGSEKQNTQFRLWEHEGPITSLALDL-TRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLA--PHDTTVASTS 293 (520)
Q Consensus 220 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~--~~~~~l~~~~ 293 (520)
.-.-..-..+.|..+.-|. ..+-.|+..|..+.---+.+-.....+ ....|.++. .+|.+-+...
T Consensus 238 ---------sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~ 308 (671)
T COG3292 238 ---------SNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTY 308 (671)
T ss_pred ---------cccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCCEeeecc
Confidence 0000011234454444443 567777777654332222222222222 223444544 4455544444
Q ss_pred CCeEEEEE
Q 009993 294 GSDVYIWD 301 (520)
Q Consensus 294 d~~i~iwd 301 (520)
++.+++-+
T Consensus 309 ~giv~~~~ 316 (671)
T COG3292 309 GGIVRYLT 316 (671)
T ss_pred CceEEEec
Confidence 66555543
No 500
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=65.46 E-value=1.4e+02 Score=29.03 Aligned_cols=75 Identities=17% Similarity=0.098 Sum_probs=39.7
Q ss_pred ccceEEEEecCCCCEEEEEe-----------CCC-eEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCC
Q 009993 316 VGNTKSLARSHTGDFLFTGG-----------EDG-AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGD 383 (520)
Q Consensus 316 ~~~i~~l~~s~~~~~l~tg~-----------~dg-~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d 383 (520)
-.....|+|.++|+++++-. ..+ .|.+++-.++.- .......+.......+.+++.+.-|+++...
T Consensus 13 ~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG--~~d~~~vfa~~l~~p~Gi~~~~~GlyV~~~~ 90 (367)
T TIGR02604 13 LRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDG--KYDKSNVFAEELSMVTGLAVAVGGVYVATPP 90 (367)
T ss_pred cCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCC--CcceeEEeecCCCCccceeEecCCEEEeCCC
Confidence 34567889999999777642 223 677776443211 1112223333334567888855335555555
Q ss_pred CcEEEEeCC
Q 009993 384 GKLSLIDVR 392 (520)
Q Consensus 384 g~i~vwd~~ 392 (520)
...++.|..
T Consensus 91 ~i~~~~d~~ 99 (367)
T TIGR02604 91 DILFLRDKD 99 (367)
T ss_pred eEEEEeCCC
Confidence 433343543
Done!