Query 009993
Match_columns 520
No_of_seqs 896 out of 4792
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 17:31:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009993.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009993hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.8E-52 2E-56 414.6 44.8 395 54-496 9-430 (445)
2 1p22_A F-BOX/WD-repeat protein 100.0 6.8E-51 2.3E-55 405.4 39.0 369 55-457 2-419 (435)
3 3v7d_B Cell division control p 100.0 8.3E-51 2.8E-55 408.5 39.8 388 53-493 4-451 (464)
4 1vyh_C Platelet-activating fac 100.0 1E-43 3.5E-48 350.3 38.6 278 135-451 101-410 (410)
5 1got_B GT-beta; complex (GTP-b 100.0 3.4E-42 1.2E-46 330.9 41.0 280 135-449 48-340 (340)
6 3ow8_A WD repeat-containing pr 100.0 4.6E-42 1.6E-46 326.9 37.7 280 133-451 23-320 (321)
7 2ynn_A Coatomer subunit beta'; 100.0 6.3E-42 2.1E-46 323.7 38.4 280 135-453 6-303 (304)
8 2pbi_B Guanine nucleotide-bind 100.0 1.1E-40 3.9E-45 321.9 40.2 284 133-449 55-354 (354)
9 3iz6_a 40S ribosomal protein R 100.0 7.8E-42 2.7E-46 333.6 28.2 293 134-454 58-377 (380)
10 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.9E-40 6.4E-45 319.4 37.1 303 134-458 7-341 (345)
11 1nr0_A Actin interacting prote 100.0 2.1E-40 7E-45 343.8 39.8 352 107-510 106-609 (611)
12 4ery_A WD repeat-containing pr 100.0 9.5E-40 3.3E-44 310.1 38.7 280 134-451 15-311 (312)
13 1nr0_A Actin interacting prote 100.0 2.5E-40 8.5E-45 343.1 36.1 360 110-494 24-512 (611)
14 3frx_A Guanine nucleotide-bind 100.0 1.4E-39 4.9E-44 309.6 37.6 285 134-453 9-318 (319)
15 1erj_A Transcriptional repress 100.0 1.5E-39 5.1E-44 318.9 38.7 281 140-453 62-390 (393)
16 4g56_B MGC81050 protein; prote 100.0 2.8E-40 9.5E-45 319.5 32.6 299 122-456 22-347 (357)
17 4gqb_B Methylosome protein 50; 100.0 5.6E-40 1.9E-44 314.8 34.4 290 129-455 17-334 (344)
18 2xzm_R RACK1; ribosome, transl 100.0 8.6E-39 3E-43 307.6 38.0 292 133-453 12-341 (343)
19 2hes_X YDR267CP; beta-propelle 100.0 9.8E-39 3.4E-43 305.4 37.1 294 135-453 7-329 (330)
20 4aow_A Guanine nucleotide-bind 100.0 1.7E-38 5.8E-43 305.0 37.4 291 133-454 29-339 (340)
21 1vyh_C Platelet-activating fac 100.0 4.8E-39 1.7E-43 316.9 30.7 265 107-392 111-410 (410)
22 2ymu_A WD-40 repeat protein; u 100.0 1.1E-37 3.8E-42 321.8 39.8 316 123-494 240-570 (577)
23 3odt_A Protein DOA1; ubiquitin 100.0 3.4E-37 1.2E-41 292.3 37.5 284 133-457 9-301 (313)
24 4gqb_B Methylosome protein 50; 100.0 4.5E-38 1.5E-42 301.6 31.5 265 107-394 33-332 (344)
25 3ow8_A WD repeat-containing pr 100.0 1.9E-37 6.4E-42 295.0 32.4 250 123-392 55-320 (321)
26 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.9E-37 2.3E-41 305.4 37.8 291 125-453 138-443 (445)
27 1r5m_A SIR4-interacting protei 100.0 4.3E-37 1.5E-41 304.4 33.9 321 132-493 33-414 (425)
28 2ymu_A WD-40 repeat protein; u 100.0 1.2E-36 4E-41 314.1 37.5 315 125-494 201-529 (577)
29 1k8k_C P40, ARP2/3 complex 41 100.0 3.1E-36 1.1E-40 293.0 35.0 301 137-456 3-365 (372)
30 1sq9_A Antiviral protein SKI8; 100.0 1.9E-36 6.6E-41 297.3 32.8 299 134-453 8-396 (397)
31 3dm0_A Maltose-binding peripla 100.0 4.9E-36 1.7E-40 316.0 37.6 295 136-451 376-692 (694)
32 3i2n_A WD repeat-containing pr 100.0 2.7E-36 9.1E-41 291.7 32.6 306 135-455 11-356 (357)
33 1got_B GT-beta; complex (GTP-b 100.0 2.6E-36 9E-41 289.9 32.1 265 106-390 57-340 (340)
34 3zwl_B Eukaryotic translation 100.0 3.7E-35 1.3E-39 284.8 39.9 280 135-455 25-349 (369)
35 3vl1_A 26S proteasome regulato 100.0 2.2E-36 7.6E-41 299.3 30.8 312 143-492 57-407 (420)
36 2ynn_A Coatomer subunit beta'; 100.0 3.8E-36 1.3E-40 284.0 30.5 267 106-393 15-302 (304)
37 1gxr_A ESG1, transducin-like e 100.0 4.7E-35 1.6E-39 280.4 37.4 272 138-450 47-335 (337)
38 3frx_A Guanine nucleotide-bind 100.0 2.3E-35 7.9E-40 280.6 33.0 263 107-393 20-317 (319)
39 4g56_B MGC81050 protein; prote 100.0 3.6E-36 1.2E-40 290.6 26.5 266 106-394 44-344 (357)
40 2pm9_A Protein WEB1, protein t 100.0 1E-36 3.5E-41 301.2 23.1 318 141-492 11-402 (416)
41 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-34 4.5E-39 325.0 42.4 330 136-494 609-1024(1249)
42 3ei3_B DNA damage-binding prot 100.0 3.6E-35 1.2E-39 287.0 32.9 277 135-452 66-382 (383)
43 3gre_A Serine/threonine-protei 100.0 5.4E-36 1.9E-40 298.2 27.5 310 130-449 47-437 (437)
44 3vl1_A 26S proteasome regulato 100.0 6.9E-35 2.4E-39 288.6 35.2 299 125-452 77-419 (420)
45 1pgu_A Actin interacting prote 100.0 1.2E-34 4.3E-39 301.2 38.5 322 127-493 143-603 (615)
46 1erj_A Transcriptional repress 100.0 3.5E-35 1.2E-39 287.9 31.5 266 106-393 66-389 (393)
47 3dwl_C Actin-related protein 2 100.0 2.3E-36 7.8E-41 294.8 22.9 298 138-450 7-377 (377)
48 2pm9_A Protein WEB1, protein t 100.0 2.5E-36 8.5E-41 298.4 23.1 318 125-453 44-415 (416)
49 1r5m_A SIR4-interacting protei 100.0 2.5E-35 8.4E-40 291.8 30.2 289 141-451 107-424 (425)
50 2pbi_B Guanine nucleotide-bind 100.0 3.7E-35 1.3E-39 283.2 30.0 270 99-390 61-354 (354)
51 3mkq_A Coatomer beta'-subunit; 100.0 4.9E-35 1.7E-39 314.5 34.1 281 135-453 6-303 (814)
52 2pm7_B Protein transport prote 100.0 2.6E-34 8.8E-39 270.5 34.0 246 135-393 2-285 (297)
53 3fm0_A Protein CIAO1; WDR39,SG 100.0 9.4E-35 3.2E-39 279.6 31.7 278 107-395 19-337 (345)
54 4h5i_A Guanine nucleotide-exch 100.0 2.5E-34 8.5E-39 278.5 34.0 287 143-453 15-344 (365)
55 3sfz_A APAF-1, apoptotic pepti 100.0 7.3E-35 2.5E-39 327.1 34.7 327 124-494 635-1106(1249)
56 1gxr_A ESG1, transducin-like e 100.0 3.6E-34 1.2E-38 274.3 34.0 305 141-493 8-326 (337)
57 2hes_X YDR267CP; beta-propelle 100.0 4.7E-34 1.6E-38 272.9 34.5 298 173-512 3-328 (330)
58 2j04_B YDR362CP, TAU91; beta p 100.0 2.9E-35 9.9E-40 296.2 26.0 304 141-453 132-518 (524)
59 3v7d_B Cell division control p 100.0 1.6E-33 5.3E-38 282.7 38.6 295 124-448 140-459 (464)
60 3k26_A Polycomb protein EED; W 100.0 1.1E-34 3.6E-39 281.3 28.4 286 136-451 12-365 (366)
61 4aez_A CDC20, WD repeat-contai 100.0 6.3E-34 2.2E-38 279.9 33.9 283 139-459 88-387 (401)
62 1yfq_A Cell cycle arrest prote 100.0 4.4E-34 1.5E-38 274.5 31.6 281 137-450 6-322 (342)
63 4ery_A WD repeat-containing pr 100.0 8.4E-34 2.9E-38 269.1 32.8 266 106-392 25-311 (312)
64 4a11_B DNA excision repair pro 100.0 1E-33 3.5E-38 278.7 33.7 287 133-458 34-371 (408)
65 4e54_B DNA damage-binding prot 100.0 4.2E-35 1.4E-39 291.4 23.9 284 135-455 112-433 (435)
66 3iz6_a 40S ribosomal protein R 100.0 2.4E-35 8.2E-40 287.6 21.6 274 99-394 63-376 (380)
67 1p22_A F-BOX/WD-repeat protein 100.0 5.1E-34 1.8E-38 283.7 30.4 256 124-394 151-415 (435)
68 1pgu_A Actin interacting prote 100.0 4.5E-34 1.5E-38 296.9 30.2 300 108-451 22-365 (615)
69 3bg1_A Protein SEC13 homolog; 100.0 3.6E-34 1.2E-38 271.9 25.0 244 136-393 7-293 (316)
70 2oaj_A Protein SNI1; WD40 repe 100.0 3.9E-33 1.3E-37 299.7 35.5 234 135-391 10-310 (902)
71 2xzm_R RACK1; ribosome, transl 100.0 5.9E-33 2E-37 266.9 32.8 257 123-394 46-341 (343)
72 4gga_A P55CDC, cell division c 100.0 1.6E-32 5.6E-37 271.5 36.0 269 145-455 108-398 (420)
73 3mkq_A Coatomer beta'-subunit; 100.0 8.1E-33 2.8E-37 297.2 36.7 351 107-493 16-412 (814)
74 3vu4_A KMHSV2; beta-propeller 100.0 8.1E-33 2.8E-37 267.0 32.3 297 134-455 11-339 (355)
75 2oaj_A Protein SNI1; WD40 repe 100.0 2.4E-33 8.1E-38 301.4 29.4 232 107-344 20-309 (902)
76 3mmy_A MRNA export factor; mRN 100.0 9.8E-33 3.4E-37 267.6 30.4 283 134-452 31-346 (368)
77 4ggc_A P55CDC, cell division c 100.0 8.9E-32 3E-36 255.6 36.1 267 145-453 28-316 (318)
78 2pm7_B Protein transport prote 100.0 3.7E-32 1.3E-36 255.7 33.0 245 178-452 3-285 (297)
79 4gga_A P55CDC, cell division c 100.0 3.7E-32 1.3E-36 268.9 34.4 250 125-394 124-396 (420)
80 4aow_A Guanine nucleotide-bind 100.0 2.5E-32 8.5E-37 262.0 31.6 279 98-394 34-338 (340)
81 3f3f_A Nucleoporin SEH1; struc 100.0 1.1E-32 3.6E-37 265.0 28.1 290 136-455 5-340 (351)
82 3jrp_A Fusion protein of prote 100.0 3.6E-32 1.2E-36 264.9 30.4 247 134-393 3-287 (379)
83 4aez_A CDC20, WD repeat-contai 100.0 3.1E-32 1.1E-36 267.8 30.0 256 122-395 109-382 (401)
84 4ggc_A P55CDC, cell division c 100.0 6.4E-32 2.2E-36 256.6 30.3 251 123-393 42-315 (318)
85 3dw8_B Serine/threonine-protei 100.0 7.7E-32 2.6E-36 268.9 31.9 247 140-395 26-375 (447)
86 3gre_A Serine/threonine-protei 100.0 3.8E-32 1.3E-36 270.5 28.7 288 150-458 35-365 (437)
87 3dm0_A Maltose-binding peripla 100.0 5.1E-32 1.7E-36 285.3 30.6 267 107-393 385-693 (694)
88 3i2n_A WD repeat-containing pr 100.0 2.3E-32 7.7E-37 264.1 25.3 276 106-394 20-354 (357)
89 2j04_B YDR362CP, TAU91; beta p 100.0 1E-32 3.5E-37 277.7 22.8 254 127-393 184-517 (524)
90 1sq9_A Antiviral protein SKI8; 100.0 9.2E-32 3.2E-36 264.0 26.8 271 106-394 18-396 (397)
91 3zwl_B Eukaryotic translation 100.0 8.2E-31 2.8E-35 254.1 33.0 278 106-395 34-348 (369)
92 3bg1_A Protein SEC13 homolog; 100.0 6.6E-32 2.3E-36 256.3 24.3 243 180-451 9-292 (316)
93 3k26_A Polycomb protein EED; W 100.0 7.3E-32 2.5E-36 261.4 24.9 271 106-392 20-365 (366)
94 3jro_A Fusion protein of prote 100.0 1.1E-31 3.6E-36 284.6 28.1 247 135-394 2-286 (753)
95 3odt_A Protein DOA1; ubiquitin 100.0 5.3E-31 1.8E-35 249.5 29.5 261 107-395 21-298 (313)
96 1k8k_C P40, ARP2/3 complex 41 100.0 3.5E-31 1.2E-35 257.3 28.0 277 107-395 11-363 (372)
97 3dwl_C Actin-related protein 2 100.0 3.6E-32 1.2E-36 265.1 20.6 272 107-391 14-377 (377)
98 3ei3_B DNA damage-binding prot 100.0 7.9E-31 2.7E-35 256.2 28.0 294 170-492 59-371 (383)
99 2j04_A TAU60, YPL007P, hypothe 100.0 1E-31 3.5E-36 263.7 21.2 299 139-493 12-350 (588)
100 4e54_B DNA damage-binding prot 100.0 1.1E-31 3.6E-36 266.8 20.9 301 181-517 116-435 (435)
101 2aq5_A Coronin-1A; WD40 repeat 100.0 2.5E-30 8.5E-35 254.3 27.3 279 145-453 37-343 (402)
102 4a11_B DNA excision repair pro 100.0 1.4E-30 4.9E-35 256.1 25.0 318 163-512 22-365 (408)
103 3jrp_A Fusion protein of prote 100.0 1.7E-29 5.9E-34 245.9 31.9 250 175-452 2-287 (379)
104 3dw8_B Serine/threonine-protei 100.0 1.3E-29 4.5E-34 252.7 28.8 288 183-493 27-436 (447)
105 2aq5_A Coronin-1A; WD40 repeat 100.0 3.9E-30 1.3E-34 252.9 24.1 256 123-394 54-343 (402)
106 2xyi_A Probable histone-bindin 100.0 2.7E-29 9.3E-34 249.0 28.3 252 136-394 122-411 (430)
107 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.4E-28 4.7E-33 245.6 33.2 273 142-452 4-391 (450)
108 3mmy_A MRNA export factor; mRN 100.0 1.2E-28 4.2E-33 238.7 28.6 283 168-495 23-337 (368)
109 3lrv_A PRE-mRNA-splicing facto 100.0 3.1E-29 1.1E-33 240.9 24.0 270 149-451 43-332 (343)
110 2xyi_A Probable histone-bindin 100.0 2.3E-28 7.9E-33 242.4 30.8 261 180-454 124-412 (430)
111 4h5i_A Guanine nucleotide-exch 100.0 7.4E-29 2.5E-33 240.0 25.7 234 137-394 68-344 (365)
112 1yfq_A Cell cycle arrest prote 100.0 1.2E-28 4E-33 236.6 25.5 273 180-496 7-315 (342)
113 3vu4_A KMHSV2; beta-propeller 100.0 4.3E-28 1.5E-32 233.9 25.9 284 168-494 3-326 (355)
114 3jro_A Fusion protein of prote 100.0 9.3E-28 3.2E-32 254.4 29.9 247 178-452 3-285 (753)
115 3lrv_A PRE-mRNA-splicing facto 100.0 3E-28 1E-32 234.1 23.1 250 192-494 46-323 (343)
116 3bws_A Protein LP49; two-domai 100.0 8.9E-27 3E-31 231.3 33.5 272 138-451 119-431 (433)
117 2w18_A PALB2, fancn, partner a 100.0 8.3E-27 2.8E-31 215.2 30.0 272 144-450 41-355 (356)
118 1l0q_A Surface layer protein; 100.0 3.8E-26 1.3E-30 223.5 34.8 325 126-494 12-368 (391)
119 4gq1_A NUP37; propeller, trans 100.0 1.2E-27 4.1E-32 234.2 21.5 225 192-450 99-387 (393)
120 2j04_A TAU60, YPL007P, hypothe 100.0 7.8E-28 2.7E-32 236.3 18.1 249 105-393 53-321 (588)
121 1l0q_A Surface layer protein; 100.0 4.5E-25 1.5E-29 215.9 36.3 260 155-456 3-279 (391)
122 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.3E-25 4.4E-30 224.1 32.6 244 137-393 97-391 (450)
123 3f3f_A Nucleoporin SEH1; struc 100.0 5.7E-27 1.9E-31 224.9 21.6 242 105-349 12-339 (351)
124 4gq1_A NUP37; propeller, trans 99.9 6.8E-27 2.3E-31 228.8 21.2 234 139-393 86-389 (393)
125 2w18_A PALB2, fancn, partner a 99.9 1.4E-25 4.9E-30 206.9 25.2 238 133-391 77-355 (356)
126 3bws_A Protein LP49; two-domai 99.9 2E-23 6.8E-28 207.1 34.7 234 137-393 164-432 (433)
127 1nir_A Nitrite reductase; hemo 99.9 3.7E-23 1.3E-27 209.8 29.0 324 149-511 144-513 (543)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 6.2E-23 2.1E-27 201.9 25.1 289 144-485 64-409 (415)
129 1nir_A Nitrite reductase; hemo 99.9 3.2E-22 1.1E-26 202.8 30.6 304 127-456 160-518 (543)
130 2ecf_A Dipeptidyl peptidase IV 99.9 5.7E-21 1.9E-25 202.8 28.7 303 142-494 36-445 (741)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.2E-20 4E-25 185.6 24.5 262 128-434 95-408 (415)
132 1k32_A Tricorn protease; prote 99.9 6.6E-20 2.2E-24 201.5 29.5 320 135-494 45-441 (1045)
133 3u4y_A Uncharacterized protein 99.9 9.3E-19 3.2E-23 166.8 31.4 278 149-453 4-305 (331)
134 1xfd_A DIP, dipeptidyl aminope 99.8 3.5E-20 1.2E-24 196.2 22.0 307 144-491 18-427 (723)
135 3vgz_A Uncharacterized protein 99.8 4.3E-18 1.5E-22 163.5 33.5 233 141-394 39-304 (353)
136 1pby_B Quinohemoprotein amine 99.8 3.1E-19 1.1E-23 170.3 25.2 259 155-455 2-313 (337)
137 3o4h_A Acylamino-acid-releasin 99.8 6.2E-19 2.1E-23 181.7 26.8 239 130-391 8-274 (582)
138 1k32_A Tricorn protease; prote 99.8 1.7E-18 5.8E-23 190.3 31.4 241 127-393 225-502 (1045)
139 1ri6_A Putative isomerase YBHE 99.8 2.7E-18 9.1E-23 164.2 27.6 270 156-451 7-307 (343)
140 2z3z_A Dipeptidyl aminopeptida 99.8 3.4E-18 1.2E-22 180.4 29.5 283 143-454 82-437 (706)
141 2ojh_A Uncharacterized protein 99.8 3.2E-18 1.1E-22 159.8 23.2 230 135-383 34-292 (297)
142 2oit_A Nucleoporin 214KDA; NH2 99.8 7.5E-18 2.6E-22 166.2 25.6 215 164-394 23-279 (434)
143 3vgz_A Uncharacterized protein 99.8 2.9E-17 1E-21 157.7 27.9 257 187-494 45-334 (353)
144 2ojh_A Uncharacterized protein 99.8 1.2E-17 4E-22 155.9 23.9 248 199-495 17-293 (297)
145 2z3z_A Dipeptidyl aminopeptida 99.8 4E-18 1.4E-22 179.9 23.0 294 145-493 28-420 (706)
146 3u4y_A Uncharacterized protein 99.8 3.8E-17 1.3E-21 155.6 26.9 276 194-512 10-304 (331)
147 1ri6_A Putative isomerase YBHE 99.8 5.1E-17 1.7E-21 155.3 27.8 239 140-392 35-307 (343)
148 1xfd_A DIP, dipeptidyl aminope 99.8 1.3E-17 4.3E-22 176.5 25.4 275 108-393 20-393 (723)
149 1jmx_B Amine dehydrogenase; ox 99.8 2.4E-17 8.2E-22 158.0 23.9 259 147-455 4-328 (349)
150 2ecf_A Dipeptidyl peptidase IV 99.8 3.2E-17 1.1E-21 173.9 26.2 277 144-452 110-459 (741)
151 1pby_B Quinohemoprotein amine 99.8 3.4E-17 1.2E-21 156.1 22.9 226 144-394 35-311 (337)
152 3hfq_A Uncharacterized protein 99.8 2.3E-15 7.8E-20 144.3 31.8 261 163-451 15-316 (347)
153 3hfq_A Uncharacterized protein 99.7 6.4E-16 2.2E-20 148.1 27.5 238 139-392 36-316 (347)
154 2oit_A Nucleoporin 214KDA; NH2 99.7 6.8E-17 2.3E-21 159.3 20.8 196 238-453 37-279 (434)
155 3scy_A Hypothetical bacterial 99.7 3.4E-15 1.2E-19 143.9 32.4 275 153-451 12-336 (361)
156 4a5s_A Dipeptidyl peptidase 4 99.7 2.3E-16 8E-21 166.9 25.3 234 143-393 17-353 (740)
157 3scy_A Hypothetical bacterial 99.7 8.3E-15 2.8E-19 141.2 31.9 242 141-392 48-336 (361)
158 3pe7_A Oligogalacturonate lyas 99.7 2.4E-15 8.1E-20 146.5 24.9 289 135-451 23-381 (388)
159 3azo_A Aminopeptidase; POP fam 99.7 4.1E-15 1.4E-19 155.6 25.4 279 135-454 16-371 (662)
160 3o4h_A Acylamino-acid-releasin 99.7 6E-16 2.1E-20 159.3 18.6 258 185-494 24-302 (582)
161 1z68_A Fibroblast activation p 99.7 1.3E-15 4.4E-20 161.0 21.3 296 147-491 20-427 (719)
162 1z68_A Fibroblast activation p 99.7 9.6E-16 3.3E-20 162.0 17.0 256 125-393 35-391 (719)
163 1jof_A Carboxy-CIS,CIS-muconat 99.7 5.3E-14 1.8E-18 135.8 27.8 270 156-453 4-342 (365)
164 1q7f_A NHL, brain tumor CG1071 99.7 3.1E-13 1.1E-17 125.5 31.6 231 139-393 26-280 (286)
165 3fvz_A Peptidyl-glycine alpha- 99.7 1.4E-13 4.7E-18 130.8 29.4 241 142-393 23-322 (329)
166 1jof_A Carboxy-CIS,CIS-muconat 99.7 2E-14 6.8E-19 138.7 23.6 238 141-393 38-341 (365)
167 3pe7_A Oligogalacturonate lyas 99.7 1.5E-14 5.3E-19 140.7 23.0 302 167-510 13-380 (388)
168 1jmx_B Amine dehydrogenase; ox 99.6 2.4E-14 8.3E-19 136.9 23.4 188 144-348 44-326 (349)
169 2oiz_A Aromatic amine dehydrog 99.6 3E-14 1E-18 137.0 22.3 286 153-486 14-360 (361)
170 3c5m_A Oligogalacturonate lyas 99.6 3.3E-14 1.1E-18 138.7 19.2 228 144-394 37-330 (396)
171 3dsm_A Uncharacterized protein 99.5 4.2E-12 1.5E-16 120.3 28.1 253 162-456 15-305 (328)
172 3dsm_A Uncharacterized protein 99.5 5.9E-12 2E-16 119.3 28.4 230 143-392 44-301 (328)
173 2gop_A Trilobed protease; beta 99.5 4.3E-12 1.5E-16 121.3 27.5 251 143-451 15-330 (347)
174 2oiz_A Aromatic amine dehydrog 99.5 1.8E-12 6E-17 124.6 24.7 235 135-394 44-335 (361)
175 2z2n_A Virginiamycin B lyase; 99.5 1.2E-10 4.2E-15 108.4 36.1 233 138-392 10-254 (299)
176 1q7f_A NHL, brain tumor CG1071 99.5 1.7E-11 5.7E-16 113.7 28.9 232 188-453 35-281 (286)
177 2xdw_A Prolyl endopeptidase; a 99.5 5.7E-12 1.9E-16 132.7 28.3 242 139-395 121-416 (710)
178 2gop_A Trilobed protease; beta 99.5 4.7E-12 1.6E-16 121.0 25.3 220 143-392 59-330 (347)
179 2bkl_A Prolyl endopeptidase; m 99.5 7.1E-13 2.4E-17 139.2 21.3 241 139-394 117-398 (695)
180 1qks_A Cytochrome CD1 nitrite 99.5 7.3E-11 2.5E-15 119.3 34.2 313 151-494 164-523 (567)
181 3no2_A Uncharacterized protein 99.5 1.9E-11 6.5E-16 112.4 27.4 202 153-380 4-230 (276)
182 3e5z_A Putative gluconolactona 99.5 8.4E-12 2.9E-16 116.4 25.3 233 136-393 21-286 (296)
183 3c5m_A Oligogalacturonate lyas 99.5 2.3E-12 7.8E-17 125.5 21.3 283 167-493 13-370 (396)
184 2dg1_A DRP35, lactonase; beta 99.5 1.2E-11 4.2E-16 117.4 25.7 231 143-392 6-262 (333)
185 3azo_A Aminopeptidase; POP fam 99.5 4E-12 1.4E-16 132.9 24.1 226 147-394 81-370 (662)
186 2dg1_A DRP35, lactonase; beta 99.5 4.4E-11 1.5E-15 113.6 28.7 238 127-383 28-300 (333)
187 3q7m_A Lipoprotein YFGL, BAMB; 99.5 4.4E-11 1.5E-15 115.7 28.7 265 153-456 52-341 (376)
188 4a5s_A Dipeptidyl peptidase 4 99.5 1.3E-11 4.3E-16 130.7 26.4 244 125-381 35-381 (740)
189 3fvz_A Peptidyl-glycine alpha- 99.5 1.3E-10 4.3E-15 110.2 30.1 229 188-452 29-322 (329)
190 1qks_A Cytochrome CD1 nitrite 99.4 4.9E-10 1.7E-14 113.3 35.3 247 144-394 198-478 (567)
191 1rwi_B Serine/threonine-protei 99.4 4.1E-11 1.4E-15 110.0 25.2 229 144-394 25-265 (270)
192 2qc5_A Streptogramin B lactona 99.4 3E-09 1E-13 99.0 34.8 231 140-392 17-259 (300)
193 3q7m_A Lipoprotein YFGL, BAMB; 99.4 1.5E-10 5.2E-15 111.9 26.7 260 153-449 102-375 (376)
194 2mad_H Methylamine dehydrogena 99.4 1.6E-09 5.3E-14 104.1 32.8 273 150-458 28-356 (373)
195 2z2n_A Virginiamycin B lyase; 99.4 3.8E-09 1.3E-13 98.2 32.6 231 141-393 55-295 (299)
196 1yr2_A Prolyl oligopeptidase; 99.4 1E-10 3.6E-15 123.6 24.4 239 140-395 160-443 (741)
197 1xip_A Nucleoporin NUP159; bet 99.3 1.7E-10 5.8E-15 109.9 22.0 180 183-379 38-230 (388)
198 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 1.9E-09 6.5E-14 101.2 29.1 236 141-393 16-299 (314)
199 2xdw_A Prolyl endopeptidase; a 99.3 6.2E-10 2.1E-14 117.1 27.9 264 152-454 81-416 (710)
200 1rwi_B Serine/threonine-protei 99.3 4.5E-10 1.5E-14 103.0 23.7 228 188-455 29-267 (270)
201 2bkl_A Prolyl endopeptidase; m 99.3 1.1E-10 3.8E-15 122.4 22.1 266 151-454 76-399 (695)
202 3sjl_D Methylamine dehydrogena 99.3 3.2E-10 1.1E-14 107.6 22.9 272 149-458 39-369 (386)
203 3no2_A Uncharacterized protein 99.3 5.6E-11 1.9E-15 109.3 16.4 218 247-491 5-230 (276)
204 3e5z_A Putative gluconolactona 99.3 1.8E-09 6.3E-14 100.4 26.6 185 187-393 32-246 (296)
205 3hrp_A Uncharacterized protein 99.3 5.8E-09 2E-13 101.6 28.7 229 143-391 131-408 (409)
206 1kb0_A Quinohemoprotein alcoho 99.3 1E-09 3.6E-14 113.9 24.5 189 154-350 77-349 (677)
207 2mad_H Methylamine dehydrogena 99.2 2.8E-08 9.7E-13 95.3 32.3 228 147-396 70-353 (373)
208 1yiq_A Quinohemoprotein alcoho 99.2 1.2E-09 4E-14 113.8 24.0 189 154-350 70-341 (689)
209 1xip_A Nucleoporin NUP159; bet 99.2 3.6E-10 1.2E-14 107.7 18.4 170 144-333 39-230 (388)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 1.3E-08 4.4E-13 95.4 27.3 233 188-452 23-299 (314)
211 3iuj_A Prolyl endopeptidase; h 99.2 3E-09 1E-13 111.4 23.9 236 139-394 125-406 (693)
212 2qc5_A Streptogramin B lactona 99.2 7.1E-08 2.4E-12 89.5 30.3 228 141-391 60-298 (300)
213 3c75_H MADH, methylamine dehyd 99.2 8.2E-09 2.8E-13 99.8 23.5 271 152-457 82-407 (426)
214 1yr2_A Prolyl oligopeptidase; 99.1 3.9E-09 1.3E-13 111.5 23.2 265 151-454 115-443 (741)
215 3sjl_D Methylamine dehydrogena 99.1 1.1E-08 3.9E-13 96.9 23.8 227 147-395 82-365 (386)
216 1fs1_A SKP2 F-BOX, cyclin A/CD 99.1 3.7E-11 1.3E-15 79.0 4.4 47 61-107 6-52 (53)
217 2hz6_A Endoplasmic reticulum t 99.1 4.6E-11 1.6E-15 115.0 6.2 182 153-348 8-193 (369)
218 3g4e_A Regucalcin; six bladed 99.1 1.7E-07 5.8E-12 87.1 29.3 212 143-373 13-249 (297)
219 2ghs_A AGR_C_1268P; regucalcin 99.1 4.9E-07 1.7E-11 85.2 30.8 215 144-381 50-290 (326)
220 1kb0_A Quinohemoprotein alcoho 99.0 7.9E-08 2.7E-12 99.8 26.8 236 153-396 127-510 (677)
221 1yiq_A Quinohemoprotein alcoho 99.0 7.8E-08 2.7E-12 100.0 26.7 236 154-397 121-509 (689)
222 2hz6_A Endoplasmic reticulum t 99.0 6.8E-11 2.3E-15 113.8 1.5 183 245-456 7-196 (369)
223 3dr2_A Exported gluconolactona 99.0 2.2E-07 7.5E-12 86.7 24.3 223 138-384 40-298 (305)
224 2iwa_A Glutamine cyclotransfer 99.0 6.9E-07 2.4E-11 80.2 26.1 192 144-348 22-238 (266)
225 2ad6_A Methanol dehydrogenase 98.9 5E-07 1.7E-11 91.7 27.4 185 154-350 62-338 (571)
226 3hxj_A Pyrrolo-quinoline quino 98.9 1.1E-08 3.8E-13 96.6 14.3 262 141-453 58-325 (330)
227 3hrp_A Uncharacterized protein 98.9 2E-07 6.7E-12 90.8 23.3 237 188-451 136-409 (409)
228 3g4e_A Regucalcin; six bladed 98.9 1.2E-06 4.2E-11 81.2 27.6 185 189-394 19-230 (297)
229 1kv9_A Type II quinohemoprotei 98.9 2E-07 6.8E-12 96.7 23.7 189 154-350 66-336 (668)
230 3hxj_A Pyrrolo-quinoline quino 98.9 1.7E-08 6E-13 95.2 13.4 214 148-392 25-243 (330)
231 3c75_H MADH, methylamine dehyd 98.9 2.1E-07 7.1E-12 90.0 20.7 227 147-395 122-404 (426)
232 3dr2_A Exported gluconolactona 98.9 5.7E-07 2E-11 83.8 23.0 182 189-393 51-267 (305)
233 1w6s_A Methanol dehydrogenase 98.9 2.1E-06 7.3E-11 87.1 28.4 188 154-350 62-345 (599)
234 3nol_A Glutamine cyclotransfer 98.8 1.8E-06 6.3E-11 76.4 23.8 178 145-337 45-245 (262)
235 1mda_H Methylamine dehydrogena 98.8 1.9E-07 6.3E-12 88.8 18.2 223 135-373 59-365 (368)
236 3nok_A Glutaminyl cyclase; bet 98.8 1.7E-06 5.9E-11 76.6 22.9 178 144-336 56-254 (268)
237 2ghs_A AGR_C_1268P; regucalcin 98.8 1E-05 3.5E-10 76.0 29.2 182 189-392 55-259 (326)
238 2qe8_A Uncharacterized protein 98.8 1.5E-07 5E-12 89.5 16.4 227 143-393 17-278 (343)
239 2iwa_A Glutamine cyclotransfer 98.8 2.6E-06 8.8E-11 76.4 23.3 188 188-394 26-238 (266)
240 1flg_A Protein (quinoprotein e 98.7 7.2E-06 2.5E-10 83.3 28.0 189 154-350 68-358 (582)
241 3mbr_X Glutamine cyclotransfer 98.7 1.1E-05 3.7E-10 70.9 25.1 179 143-336 21-223 (243)
242 1mda_H Methylamine dehydrogena 98.7 5.7E-07 1.9E-11 85.4 17.2 248 165-457 47-351 (368)
243 3l2o_B F-box only protein 4; s 98.7 4.1E-09 1.4E-13 93.4 2.3 50 63-112 4-53 (312)
244 3iuj_A Prolyl endopeptidase; h 98.7 2.3E-06 7.8E-11 89.5 22.3 185 189-393 135-359 (693)
245 3nol_A Glutamine cyclotransfer 98.6 8.6E-06 2.9E-10 72.1 21.9 175 193-382 52-244 (262)
246 4a2l_A BT_4663, two-component 98.6 0.00019 6.5E-09 76.3 35.0 240 142-394 214-481 (795)
247 1kv9_A Type II quinohemoprotei 98.6 1.3E-05 4.5E-10 83.1 25.0 237 154-397 117-492 (668)
248 2qe8_A Uncharacterized protein 98.6 7.8E-06 2.7E-10 77.5 21.3 204 139-343 63-317 (343)
249 3nok_A Glutaminyl cyclase; bet 98.6 1.1E-05 3.9E-10 71.4 20.4 180 188-381 58-254 (268)
250 1w6s_A Methanol dehydrogenase 98.6 2.6E-05 8.7E-10 79.2 25.8 232 157-397 124-507 (599)
251 1k3i_A Galactose oxidase precu 98.5 2.1E-05 7.1E-10 81.6 25.4 264 147-441 190-530 (656)
252 2ad6_A Methanol dehydrogenase 98.5 3.5E-05 1.2E-09 78.2 26.1 235 154-396 115-497 (571)
253 1fwx_A Nitrous oxide reductase 98.5 3.1E-05 1.1E-09 76.8 23.9 222 157-393 18-361 (595)
254 3mbr_X Glutamine cyclotransfer 98.5 4.2E-05 1.4E-09 67.1 21.4 181 187-381 23-223 (243)
255 4a2l_A BT_4663, two-component 98.5 0.0013 4.5E-08 69.8 37.2 237 142-394 262-527 (795)
256 2ece_A 462AA long hypothetical 98.4 0.00021 7.2E-09 68.4 26.1 191 192-393 93-352 (462)
257 2p4o_A Hypothetical protein; p 98.4 0.00046 1.6E-08 64.0 28.3 221 143-383 32-278 (306)
258 3v9f_A Two-component system se 98.4 0.00034 1.2E-08 74.2 30.7 285 142-453 257-569 (781)
259 2e31_A FBS1, F-box only protei 98.4 2.3E-07 7.8E-12 83.6 4.2 49 63-111 50-99 (297)
260 1npe_A Nidogen, entactin; glyc 98.4 0.00032 1.1E-08 63.6 25.5 192 238-456 36-242 (267)
261 2ece_A 462AA long hypothetical 98.3 8.3E-05 2.9E-09 71.2 21.7 177 145-335 140-399 (462)
262 3v9f_A Two-component system se 98.3 0.0018 6.1E-08 68.6 34.3 242 143-394 211-479 (781)
263 1flg_A Protein (quinoprotein e 98.3 0.00037 1.2E-08 70.8 26.9 236 154-397 117-520 (582)
264 2fp8_A Strictosidine synthase; 98.3 0.00073 2.5E-08 63.1 26.9 230 144-393 20-313 (322)
265 1fwx_A Nitrous oxide reductase 98.3 8.5E-05 2.9E-09 73.7 20.9 217 152-382 99-407 (595)
266 1npe_A Nidogen, entactin; glyc 98.2 0.0029 9.8E-08 57.1 29.0 209 143-374 36-260 (267)
267 2fp8_A Strictosidine synthase; 98.1 0.0012 4.1E-08 61.6 24.5 197 189-392 25-268 (322)
268 2xzh_A Clathrin heavy chain 1; 98.0 0.0039 1.3E-07 56.6 23.1 188 256-458 86-296 (365)
269 1bpo_A Protein (clathrin); cla 97.8 0.0086 3E-07 56.6 23.8 188 256-458 85-295 (494)
270 3amr_A 3-phytase; beta-propell 97.8 0.011 3.6E-07 54.8 24.0 188 153-346 39-262 (355)
271 2xbg_A YCF48-like protein; pho 97.8 0.017 5.9E-07 53.8 25.5 239 129-391 66-320 (327)
272 3ii7_A Kelch-like protein 7; p 97.7 0.0098 3.3E-07 54.8 23.3 224 154-393 12-272 (306)
273 2vpj_A Kelch-like protein 12; 97.7 0.0065 2.2E-07 55.9 22.0 187 243-453 59-279 (301)
274 2xn4_A Kelch-like protein 2; s 97.7 0.014 4.7E-07 53.7 24.1 223 154-394 16-277 (302)
275 2xbg_A YCF48-like protein; pho 97.7 0.03 1E-06 52.2 35.0 239 127-386 23-272 (327)
276 1k3i_A Galactose oxidase precu 97.7 0.001 3.5E-08 68.9 17.8 234 144-382 244-530 (656)
277 2p4o_A Hypothetical protein; p 97.7 0.029 9.9E-07 51.7 26.6 232 238-494 32-278 (306)
278 3v65_B Low-density lipoprotein 97.7 0.038 1.3E-06 52.8 29.1 194 237-455 115-321 (386)
279 3ei3_A DNA damage-binding prot 97.7 0.06 2E-06 59.0 31.7 181 142-335 553-755 (1158)
280 2xe4_A Oligopeptidase B; hydro 97.7 0.0023 7.8E-08 67.3 19.5 193 139-344 169-395 (751)
281 2xn4_A Kelch-like protein 2; s 97.6 0.0096 3.3E-07 54.8 21.6 189 243-453 58-277 (302)
282 2vpj_A Kelch-like protein 12; 97.6 0.011 3.8E-07 54.3 21.8 227 153-393 14-278 (301)
283 3ii7_A Kelch-like protein 7; p 97.6 0.018 6E-07 53.1 23.1 226 195-453 13-273 (306)
284 3qqz_A Putative uncharacterize 97.6 0.04 1.4E-06 48.9 24.3 198 137-345 21-251 (255)
285 3tc9_A Hypothetical hydrolase; 97.5 0.089 3E-06 51.0 26.9 144 188-347 142-301 (430)
286 3v64_C Agrin; beta propeller, 97.4 0.08 2.7E-06 49.7 29.7 150 237-393 72-234 (349)
287 3v64_C Agrin; beta propeller, 97.4 0.082 2.8E-06 49.6 27.9 229 143-393 34-275 (349)
288 3v65_B Low-density lipoprotein 97.4 0.057 1.9E-06 51.6 24.3 191 143-348 116-319 (386)
289 1zgk_A Kelch-like ECH-associat 97.4 0.022 7.5E-07 52.5 20.5 224 153-393 24-287 (308)
290 3p5b_L Low density lipoprotein 97.4 0.1 3.5E-06 50.1 28.7 198 235-456 109-324 (400)
291 1zgk_A Kelch-like ECH-associat 97.4 0.034 1.2E-06 51.2 21.6 227 192-453 23-288 (308)
292 3sov_A LRP-6, low-density lipo 97.4 0.091 3.1E-06 48.6 26.6 191 239-455 36-241 (318)
293 2ast_B S-phase kinase-associat 97.3 0.0001 3.5E-09 69.4 3.3 45 63-107 8-52 (336)
294 1ijq_A LDL receptor, low-densi 97.3 0.11 3.8E-06 48.0 30.5 214 204-455 10-241 (316)
295 3ei3_A DNA damage-binding prot 97.3 0.34 1.2E-05 53.1 30.7 211 165-391 808-1060(1158)
296 4asc_A Kelch repeat and BTB do 97.2 0.1 3.5E-06 48.1 22.9 218 156-393 7-277 (315)
297 3m0c_C LDL receptor, low-densi 97.1 0.36 1.2E-05 50.5 30.2 151 236-393 422-589 (791)
298 2xe4_A Oligopeptidase B; hydro 97.1 0.081 2.8E-06 55.5 22.9 190 240-449 176-395 (751)
299 3pbp_A Nucleoporin NUP82; beta 97.1 0.11 3.7E-06 49.2 20.9 154 282-447 28-207 (452)
300 1xi4_A Clathrin heavy chain; a 97.1 0.035 1.2E-06 60.6 19.6 196 255-463 84-300 (1630)
301 4hw6_A Hypothetical protein, I 97.0 0.26 9E-06 47.7 25.6 188 144-345 140-372 (433)
302 3sov_A LRP-6, low-density lipo 97.0 0.22 7.4E-06 46.0 26.2 213 163-394 12-239 (318)
303 2woz_A Kelch repeat and BTB do 97.0 0.17 5.8E-06 46.7 21.8 220 156-393 18-287 (318)
304 3qqz_A Putative uncharacterize 96.9 0.2 6.9E-06 44.3 26.7 161 232-393 21-204 (255)
305 3tc9_A Hypothetical hydrolase; 96.9 0.34 1.2E-05 46.8 25.8 147 144-303 138-300 (430)
306 4asc_A Kelch repeat and BTB do 96.9 0.18 6.1E-06 46.4 21.3 142 246-394 45-222 (315)
307 2be1_A Serine/threonine-protei 96.9 0.13 4.4E-06 47.7 19.6 247 195-457 11-302 (339)
308 3ott_A Two-component system se 96.9 0.6 2E-05 49.0 32.7 223 142-393 21-260 (758)
309 3p5b_L Low density lipoprotein 96.8 0.36 1.2E-05 46.2 28.9 194 141-348 110-321 (400)
310 4hw6_A Hypothetical protein, I 96.8 0.42 1.5E-05 46.2 27.4 143 188-346 144-303 (433)
311 1ijq_A LDL receptor, low-densi 96.7 0.37 1.3E-05 44.4 31.1 217 164-394 10-239 (316)
312 3ott_A Two-component system se 96.7 0.82 2.8E-05 47.9 32.5 228 142-390 62-304 (758)
313 3kci_A Probable E3 ubiquitin-p 96.6 0.52 1.8E-05 44.9 27.5 261 186-455 54-348 (389)
314 2woz_A Kelch repeat and BTB do 96.6 0.38 1.3E-05 44.2 20.9 142 246-394 56-232 (318)
315 2be1_A Serine/threonine-protei 96.6 0.03 1E-06 51.9 12.8 184 154-349 10-233 (339)
316 3amr_A 3-phytase; beta-propell 96.5 0.48 1.7E-05 43.8 22.6 181 192-392 38-262 (355)
317 2p9w_A MAL S 1 allergenic prot 96.5 0.43 1.5E-05 43.7 20.0 200 146-347 16-265 (334)
318 3m0c_C LDL receptor, low-densi 96.5 1 3.5E-05 47.1 28.0 193 142-348 423-633 (791)
319 1n7d_A LDL receptor, low-densi 96.3 0.012 4E-07 61.1 9.7 195 238-456 406-618 (699)
320 2uvk_A YJHT; unknown function, 96.3 0.25 8.7E-06 46.3 18.4 93 192-293 18-126 (357)
321 2p1m_B Transport inhibitor res 96.2 0.0019 6.5E-08 66.0 3.1 38 60-97 2-40 (594)
322 2uvk_A YJHT; unknown function, 96.1 0.33 1.1E-05 45.5 17.8 226 153-394 19-343 (357)
323 3pbp_A Nucleoporin NUP82; beta 96.0 0.25 8.6E-06 46.8 15.8 143 246-389 31-208 (452)
324 2p9w_A MAL S 1 allergenic prot 96.0 0.93 3.2E-05 41.5 23.0 160 233-393 8-215 (334)
325 4a0p_A LRP6, LRP-6, low-densit 95.8 1.9 6.6E-05 43.8 27.6 191 143-349 37-239 (628)
326 1n7d_A LDL receptor, low-densi 95.8 0.075 2.6E-06 55.1 12.5 219 163-395 385-616 (699)
327 3s94_A LRP-6, low-density lipo 95.7 2.1 7.1E-05 43.5 24.0 150 237-393 39-202 (619)
328 3s94_A LRP-6, low-density lipo 95.6 2.4 8.2E-05 43.1 23.7 193 142-349 39-245 (619)
329 3qhy_B Beta-lactamase inhibito 95.5 1.3 4.5E-05 39.8 20.8 221 186-453 25-247 (282)
330 4a0p_A LRP6, LRP-6, low-densit 95.4 2.8 9.5E-05 42.7 28.7 172 202-393 13-197 (628)
331 3kya_A Putative phosphatase; s 95.2 2.6 8.7E-05 41.2 24.8 149 187-347 143-341 (496)
332 2xzh_A Clathrin heavy chain 1; 94.9 2.2 7.5E-05 38.9 31.5 223 150-393 74-332 (365)
333 3qhy_B Beta-lactamase inhibito 94.8 2.1 7.3E-05 38.4 21.7 221 144-393 25-246 (282)
334 4d9s_A UVB-resistance protein 94.6 3.2 0.00011 39.6 35.7 300 143-455 16-360 (406)
335 1bpo_A Protein (clathrin); cla 94.2 4 0.00014 38.8 31.6 260 162-459 46-338 (494)
336 3ogk_B Coronatine-insensitive 94.1 0.018 6.1E-07 58.7 2.2 35 64-98 13-48 (592)
337 1xi4_A Clathrin heavy chain; a 94.1 7.3 0.00025 43.1 21.8 218 162-398 46-294 (1630)
338 1a12_A RCC1, regulator of chro 93.5 5.3 0.00018 38.1 36.4 259 185-454 59-367 (413)
339 3kya_A Putative phosphatase; s 93.1 7.1 0.00024 38.1 26.7 193 144-345 140-408 (496)
340 2zwa_A Leucine carboxyl methyl 93.1 8 0.00027 39.9 20.1 198 192-394 396-636 (695)
341 4d9s_A UVB-resistance protein 92.3 7.9 0.00027 36.8 32.1 259 184-453 15-306 (406)
342 2zwa_A Leucine carboxyl methyl 92.1 4.9 0.00017 41.5 16.9 186 152-348 396-636 (695)
343 3mvd_K Regulator of chromosome 91.0 11 0.00038 36.0 37.7 257 186-454 76-376 (423)
344 2ism_A Putative oxidoreductase 89.0 14 0.00049 34.2 24.5 67 144-213 32-114 (352)
345 1tl2_A L10, protein (tachylect 88.3 2.6 8.8E-05 36.0 8.8 72 317-393 41-116 (236)
346 1tl2_A L10, protein (tachylect 81.8 24 0.00081 30.2 12.9 177 154-347 4-208 (236)
347 3s25_A Hypothetical 7-bladed b 80.9 31 0.0011 31.0 23.5 210 148-390 58-290 (302)
348 1cru_A Protein (soluble quinop 80.4 17 0.00058 35.1 12.1 55 316-374 26-86 (454)
349 4hfx_A Transcription elongatio 79.9 0.96 3.3E-05 32.6 2.2 63 66-138 12-74 (97)
350 3sre_A PON1, serum paraoxonase 79.6 39 0.0013 31.3 23.0 184 183-384 50-288 (355)
351 2g8s_A Glucose/sorbosone dehyd 76.3 48 0.0016 30.5 14.7 155 317-490 18-214 (353)
352 3kci_A Probable E3 ubiquitin-p 75.5 53 0.0018 30.7 31.8 247 145-397 55-349 (389)
353 3das_A Putative oxidoreductase 75.2 51 0.0017 30.3 13.7 116 316-440 31-158 (347)
354 2ism_A Putative oxidoreductase 70.8 65 0.0022 29.6 24.1 194 187-393 35-297 (352)
355 4gq2_M Nucleoporin NUP120; bet 70.5 17 0.00057 39.0 9.8 38 143-180 236-273 (950)
356 2wg3_C Hedgehog-interacting pr 66.3 89 0.0031 30.1 13.2 60 316-375 13-79 (463)
357 4gq2_M Nucleoporin NUP120; bet 64.8 1E+02 0.0035 33.0 14.4 36 239-274 237-274 (950)
358 3q6k_A 43.2 kDa salivary prote 62.7 1E+02 0.0034 28.8 18.2 135 257-393 123-306 (381)
359 3f7f_A Nucleoporin NUP120; nuc 62.6 13 0.00044 38.0 6.5 37 238-274 222-258 (729)
360 3s25_A Hypothetical 7-bladed b 61.9 89 0.003 28.0 30.0 207 152-393 23-255 (302)
361 3of7_A Regulator of chromosome 58.9 1.3E+02 0.0045 28.9 30.8 263 184-455 66-408 (473)
362 3no0_A DNA gyrase subunit A; D 58.3 98 0.0033 27.3 15.7 125 316-452 67-196 (276)
363 3sbq_A Nitrous-oxide reductase 57.4 1.2E+02 0.0041 30.1 11.8 87 250-336 73-196 (638)
364 3sbq_A Nitrous-oxide reductase 54.9 44 0.0015 33.0 8.4 66 281-348 329-409 (638)
365 3a9g_A Putative uncharacterize 54.8 1.3E+02 0.0044 27.6 25.5 97 238-335 29-153 (354)
366 3f7f_A Nucleoporin NUP120; nuc 54.1 21 0.00073 36.4 6.5 36 143-180 222-257 (729)
367 4fhn_B Nucleoporin NUP120; pro 50.4 1.5E+02 0.0052 32.4 13.1 29 246-274 248-276 (1139)
368 3a9g_A Putative uncharacterize 50.1 1.5E+02 0.0052 27.1 20.9 51 285-335 276-330 (354)
369 3of7_A Regulator of chromosome 48.3 1.9E+02 0.0066 27.7 36.2 210 185-396 148-408 (473)
370 4fhn_B Nucleoporin NUP120; pro 47.4 14 0.00048 40.6 4.3 37 144-180 239-275 (1139)
371 1suu_A DNA gyrase subunit A; t 46.8 1.6E+02 0.0055 26.4 20.3 198 246-452 7-231 (312)
372 3uc1_A DNA gyrase subunit A; D 40.2 2.1E+02 0.0072 25.9 19.2 193 248-452 4-228 (327)
373 4a9v_A PHOX; hydrolase, beta-p 40.0 92 0.0031 30.9 8.2 39 296-334 510-548 (592)
374 3uc1_A DNA gyrase subunit A; D 39.8 2.1E+02 0.0073 25.8 24.8 238 154-394 3-280 (327)
375 3das_A Putative oxidoreductase 38.3 2.3E+02 0.008 25.9 26.2 156 237-393 79-292 (347)
376 3zwu_A Alkaline phosphatase PH 32.0 1.4E+02 0.0047 29.9 8.2 53 282-334 483-548 (592)
377 1zi0_A DNA gyrase subunit A; b 31.9 2.8E+02 0.0095 24.8 28.3 241 152-394 1-278 (307)
378 3no0_A DNA gyrase subunit A; D 29.9 2.8E+02 0.0097 24.2 18.5 155 237-394 67-247 (276)
379 1a12_A RCC1, regulator of chro 28.7 3.6E+02 0.012 25.1 35.7 246 143-395 59-367 (413)
380 3l6v_A GYRA, DNA gyrase subuni 26.4 3.9E+02 0.013 24.7 22.6 151 246-397 6-184 (370)
381 2lh0_A Histone chaperone RTT10 25.3 39 0.0013 22.4 1.9 31 63-93 8-40 (70)
382 2kwv_A RAD30 homolog B, DNA po 24.6 63 0.0022 19.3 2.5 25 55-79 12-36 (48)
383 2wg3_C Hedgehog-interacting pr 21.8 5.3E+02 0.018 24.6 10.3 29 144-172 15-44 (463)
384 3l6v_A GYRA, DNA gyrase subuni 21.4 4.8E+02 0.016 24.0 28.2 243 150-394 3-317 (370)
No 1
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5.8e-52 Score=414.59 Aligned_cols=395 Identities=20% Similarity=0.278 Sum_probs=329.9
Q ss_pred ccccCcccccccCCCHHHHHHHccCCChhhhHHHhhhhhhHHHhhcCcchhhhhhhhhcCC-CCCC--CCCCCCCCCccc
Q 009993 54 DVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGL-PIAS--APLGAGFSDDKS 130 (520)
Q Consensus 54 ~~~~~~~~~~~~~LP~el~~~i~~~L~~~~l~~~s~v~~~~~~~~~~~~lW~~~~~~~~~~-~~~~--~~~~~~~~~~~~ 130 (520)
.+.|.+++|++..||.|++.+||+||++.+|+++++|||+|+.+++++.+|+.++....-. |... ............
T Consensus 9 ~~~~~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (445)
T 2ovr_B 9 VIEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSP 88 (445)
T ss_dssp HHCCCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCH
T ss_pred hcCccccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCc
Confidence 4567788999999999999999999999999999999999999999999999976443211 1100 000000112234
Q ss_pred HHH------------------hhhhhccccccE-EEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe
Q 009993 131 WKE------------------LIDVLYGHTEAV-LTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA 191 (520)
Q Consensus 131 W~~------------------~~~~l~~h~~~V-~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~ 191 (520)
|+. ..+.+.+|.+.| +++ .+++++|++|+.||+|++||+.+++.+..+.+|...|.++.
T Consensus 89 wk~~~~~~~~~~~~w~~~~~~~~~~l~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 166 (445)
T 2ovr_B 89 WKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 166 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCCCEEEECSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEE
T ss_pred HHHHHhhhhhhhhcccCCCcceeEEecccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 552 245688999875 555 45689999999999999999999999999999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEE
Q 009993 192 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLK 271 (520)
Q Consensus 192 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~ 271 (520)
.+++.+++|+.||.|++||+.++. ....+.+|...|.++.++++.+++|+.||+|++||+.+++.+.
T Consensus 167 ~~~~~l~s~~~dg~i~vwd~~~~~-------------~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~ 233 (445)
T 2ovr_B 167 MRDNIIISGSTDRTLKVWNAETGE-------------CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLH 233 (445)
T ss_dssp EETTEEEEEETTSCEEEEETTTTE-------------EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEE
T ss_pred ecCCEEEEEeCCCeEEEEECCcCc-------------EEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEE
Confidence 889999999999999999997763 4567789999999999999999999999999999999999998
Q ss_pred Eee-eccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCc
Q 009993 272 VLR-HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC 349 (520)
Q Consensus 272 ~~~-~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~ 349 (520)
.+. |...|.++..++..+++++ |+.|++||+++++.+..+. +|...|.+++| ++.++++|+.||.|++||++++
T Consensus 234 ~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~- 309 (445)
T 2ovr_B 234 VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG- 309 (445)
T ss_dssp EEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEEC-CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC-
T ss_pred EEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEec-CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC-
Confidence 887 8999999999999999998 9999999999999998887 69999999999 7899999999999999999998
Q ss_pred cccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCccccc---Ccceee
Q 009993 350 TEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH---GFECNL 426 (520)
Q Consensus 350 ~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v 426 (520)
..+..+.+|...+.++.+++++|++|+.||.|++||++++. ....+. .|...|
T Consensus 310 -----~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~-------------------~~~~~~~~~~~~~~v 365 (445)
T 2ovr_B 310 -----NCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ-------------------CLQTLQGPNKHQSAV 365 (445)
T ss_dssp -----CEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCC-------------------EEEEECSTTSCSSCE
T ss_pred -----CEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCc-------------------EEEEEccCCCCCCCE
Confidence 67888899999999999999999999999999999998742 122222 377889
Q ss_pred EEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccccccc
Q 009993 427 LSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAK 496 (520)
Q Consensus 427 ~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~~~ 496 (520)
.++.+++++|++|+.||.|++||+.+++.+...... ........+..++|+|+|..+++++.+..
T Consensus 366 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~~~~la~~~~dg~ 430 (445)
T 2ovr_B 366 TCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTL-----ESGGSGGVVWRIRASNTKLVCAVGSRNGT 430 (445)
T ss_dssp EEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEEC-----TTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred EEEEECCCEEEEEeCCCeEEEEECCCCceeeeeecc-----ccCCCCceEEEEEecCCEEEEEEcccCCC
Confidence 999999999999999999999999987654332110 01233445788999999999988876543
No 2
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=6.8e-51 Score=405.45 Aligned_cols=369 Identities=20% Similarity=0.286 Sum_probs=302.2
Q ss_pred cccCcccccccCCCHH----HHHHHccCCChhhhHHHhhhhhhHHHhhcCcchhhhhhhhhcCCCC--------------
Q 009993 55 VLSNLHRSTITDLPPA----LISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPI-------------- 116 (520)
Q Consensus 55 ~~~~~~~~~~~~LP~e----l~~~i~~~L~~~~l~~~s~v~~~~~~~~~~~~lW~~~~~~~~~~~~-------------- 116 (520)
+.|.+++||+..||.| ++.+||+|||+.+|+++++|||+|+.+++++.+|+.+|...+....
T Consensus 2 ~~~~~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~w~~~ 81 (435)
T 1p22_A 2 PAIMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQY 81 (435)
T ss_dssp CCCCSCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSSGGGG
T ss_pred CChhhhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCcchhhhhhhhccchhhh
Confidence 4678999999999999 9999999999999999999999999999999999998766542100
Q ss_pred --CCCCCCCCCCCc------------------ccHHHh------hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEE
Q 009993 117 --ASAPLGAGFSDD------------------KSWKEL------IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWH 170 (520)
Q Consensus 117 --~~~~~~~~~~~~------------------~~W~~~------~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd 170 (520)
...+........ +.|+.- +....+|...|+|+++ ++++|++|+.||+|++||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd 159 (435)
T 1p22_A 82 LFKNKPPDGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWD 159 (435)
T ss_dssp CC---------CCSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEE
T ss_pred hhccCCCCCCCCchhhHHhhhhhhhcchhHHHhhhccCCccceEEecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEe
Confidence 000000000111 112110 1122356778999877 799999999999999999
Q ss_pred CCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEE
Q 009993 171 LEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRI 250 (520)
Q Consensus 171 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l 250 (520)
+.+++.+..+.+|...|.++..+++.|++|+.||.|++||+.++. ....+.+|...|.+++++++.+
T Consensus 160 ~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~-------------~~~~~~~h~~~v~~l~~~~~~l 226 (435)
T 1p22_A 160 KNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGE-------------MLNTLIHHCEAVLHLRFNNGMM 226 (435)
T ss_dssp SSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCC-------------EEEEECCCCSCEEEEECCTTEE
T ss_pred CCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCc-------------EEEEEcCCCCcEEEEEEcCCEE
Confidence 999999999999999999999999999999999999999998763 4567788999999999999999
Q ss_pred EEEecCCeEEEEECCCCcEE---EEee-eccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEec
Q 009993 251 YSGSWDMTVRVWDRALLKCL---KVLR-HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARS 325 (520)
Q Consensus 251 ~s~s~dg~v~iwd~~~~~~~---~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s 325 (520)
++|+.||+|++||+.+++.. ..+. |...|.++..+++++++++ |+.|++||+++++.+..+. +|...|.++.+
T Consensus 227 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~- 304 (435)
T 1p22_A 227 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN-GHKRGIACLQY- 304 (435)
T ss_dssp EEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEE-
T ss_pred EEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEc-CCCCcEEEEEe-
Confidence 99999999999999988765 3333 8899999999999999999 9999999999999999887 69999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCc
Q 009993 326 HTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKR 405 (520)
Q Consensus 326 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 405 (520)
++.++++|+.||.|++||++++ .++..+.+|...|++++|++.+|++|+.||.|++||+.+.........
T Consensus 305 -~~~~l~~g~~dg~i~iwd~~~~------~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--- 374 (435)
T 1p22_A 305 -RDRLVVSGSSDNTIRLWDIECG------ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAG--- 374 (435)
T ss_dssp -ETTEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTT---
T ss_pred -CCCEEEEEeCCCeEEEEECCCC------CEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCcccccc---
Confidence 4789999999999999999998 778889999999999999999999999999999999987542211110
Q ss_pred eeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHH
Q 009993 406 VSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIE 457 (520)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~ 457 (520)
......+.+|...|.++.+++.+|++|+.||.|++||+.++....
T Consensus 375 -------~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~~~~ 419 (435)
T 1p22_A 375 -------TLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAQ 419 (435)
T ss_dssp -------TTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC--------
T ss_pred -------chheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCCCcc
Confidence 113445678888999999999999999999999999998775543
No 3
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=8.3e-51 Score=408.55 Aligned_cols=388 Identities=21% Similarity=0.254 Sum_probs=311.0
Q ss_pred cccccCcccccccCCCHHHHHHHccCCChhhhHHHhhhhhhHHHhhcC-cchhhhhhhhhcCCCCCCC-----------C
Q 009993 53 NDVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASD-HHAWKEFYCERWGLPIASA-----------P 120 (520)
Q Consensus 53 ~~~~~~~~~~~~~~LP~el~~~i~~~L~~~~l~~~s~v~~~~~~~~~~-~~lW~~~~~~~~~~~~~~~-----------~ 120 (520)
+.+.|++++||+..||.|++.+||+|||+.+|+++++|||.|+.++.+ +.+|+.++........... +
T Consensus 4 ~~~~~~~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (464)
T 3v7d_B 4 TLIKDNLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYP 83 (464)
T ss_dssp -----CCCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTTSCCTTTHHHHHHHHHHHCT
T ss_pred cccCcccccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccccchhhhhhhhhccCC
Confidence 356789999999999999999999999999999999999999999998 7999987643322111100 0
Q ss_pred CCCCC-----------CCcccHH-----HhhhhhccccccE-EEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCC
Q 009993 121 LGAGF-----------SDDKSWK-----ELIDVLYGHTEAV-LTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPL 183 (520)
Q Consensus 121 ~~~~~-----------~~~~~W~-----~~~~~l~~h~~~V-~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~ 183 (520)
..... ...+.|. ....++.+|.+.| .++.+ ++++|++|+.||+|++||+.+++.+..+.+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h 161 (464)
T 3v7d_B 84 KLSQQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGH 161 (464)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CcccchhhHHHHHHhhhhHhhhcCCCcCcceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCC
Confidence 00000 0012332 1245788999885 66666 5789999999999999999999999999999
Q ss_pred CceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE----cCCEEEEEecCC
Q 009993 184 GCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGSWDM 257 (520)
Q Consensus 184 ~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~dg 257 (520)
...|.++. +++ .+++|+.||+|++||+.++. ....+.+|...|.++++ ++.++++|+.||
T Consensus 162 ~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~-------------~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~ 227 (464)
T 3v7d_B 162 DGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC-------------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 227 (464)
T ss_dssp SSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE-------------EEEEECCCSSCEEEEEEEESSSCEEEEEEETTS
T ss_pred CcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc-------------EEEEECCCCCccEEEEEecCCCCCEEEEEcCCC
Confidence 99999887 444 99999999999999997763 55677889999999999 347899999999
Q ss_pred eEEEEECCCCcE-----------------------EEEee-eccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEee
Q 009993 258 TVRVWDRALLKC-----------------------LKVLR-HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVN 312 (520)
Q Consensus 258 ~v~iwd~~~~~~-----------------------~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~ 312 (520)
+|++||++++.. +..+. |...|.++.++++++++++ |+.|++||+++++.+..+.
T Consensus 228 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 307 (464)
T 3v7d_B 228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS 307 (464)
T ss_dssp CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence 999999987653 22333 8889999999999999999 9999999999999999887
Q ss_pred cccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCC
Q 009993 313 GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVR 392 (520)
Q Consensus 313 ~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~ 392 (520)
+|...|.+++|+|+++++++|+.||.|++||++++ .++..+.+|...|.++.|++.+|++|+.||.|++||+.
T Consensus 308 -~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~------~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~ 380 (464)
T 3v7d_B 308 -GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG------ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAN 380 (464)
T ss_dssp -CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred -CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------cEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECC
Confidence 69999999999999999999999999999999998 78889999999999999999999999999999999998
Q ss_pred cccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhh
Q 009993 393 KLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRM 472 (520)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 472 (520)
+.... ....+.+...+.++.+++.++++|+ ||.|++||+.+++.+..... ..
T Consensus 381 ~~~~~------------------~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~---------~~ 432 (464)
T 3v7d_B 381 DYSRK------------------FSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANIL---------KD 432 (464)
T ss_dssp TCCEE------------------EEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTT---------TT
T ss_pred CCcee------------------eeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhc---------cC
Confidence 74211 1112345567788899999999998 89999999998866533111 12
Q ss_pred hhccceeeeccCCCccccccc
Q 009993 473 RRRKLQTEMSSKGGRTDQCSV 493 (520)
Q Consensus 473 ~~~~~~~~~s~~g~~~~~~s~ 493 (520)
...+..++|+ ++++++++.
T Consensus 433 ~~~v~~v~~~--~~~l~~~~~ 451 (464)
T 3v7d_B 433 ADQIWSVNFK--GKTLVAAVE 451 (464)
T ss_dssp CSEEEEEEEE--TTEEEEEEE
T ss_pred CCcEEEEEec--CCEEEEEEE
Confidence 3446777775 666666554
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1e-43 Score=350.32 Aligned_cols=278 Identities=22% Similarity=0.370 Sum_probs=249.6
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV 212 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~ 212 (520)
...+.+|.++|++++|+|++.+|++|+.||+|+|||+.+++....+.+|...|.++. +++++|++|+.||+|++||+.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 456889999999999999999999999999999999999999999999999888776 889999999999999999987
Q ss_pred cCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCC
Q 009993 213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDT 287 (520)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~ 287 (520)
++. ....+.+|...|.+++| +++++++|+.|++|++||++++.++..+. |...|.++. +++.
T Consensus 181 ~~~-------------~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~ 247 (410)
T 1vyh_C 181 GFE-------------CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT 247 (410)
T ss_dssp SSC-------------EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred CCc-------------eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC
Confidence 652 45567799999999999 67899999999999999999999998887 888999887 7889
Q ss_pred EEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCC--------------------CCEEEEEeCCCeEEEEEcc
Q 009993 288 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT--------------------GDFLFTGGEDGAIHMYEII 346 (520)
Q Consensus 288 ~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~--------------------~~~l~tg~~dg~i~iwd~~ 346 (520)
++++++ |+.|++||+.+++....+. +|...|.+++|+|+ +.+|++|+.|+.|++||++
T Consensus 248 ~l~s~s~D~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~ 326 (410)
T 1vyh_C 248 LIASCSNDQTVRVWVVATKECKAELR-EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326 (410)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred EEEEEcCCCeEEEEECCCCceeeEec-CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence 999999 9999999999999888886 69999999999996 6789999999999999999
Q ss_pred cCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcce
Q 009993 347 NDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC 424 (520)
Q Consensus 347 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (520)
++ .++..+.+|...|++++|+| .+|++|+.||.|++||+.+. .+...+.+|..
T Consensus 327 ~~------~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-------------------~~~~~~~~h~~ 381 (410)
T 1vyh_C 327 TG------MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-------------------RCMKTLNAHEH 381 (410)
T ss_dssp TT------EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS-------------------CCCEEEECCSS
T ss_pred CC------ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------------------ceEEEEcCCCC
Confidence 98 78888999999999999976 69999999999999999763 33455677888
Q ss_pred eeEEEEecCC--EEEEecCCCeEEEEeCC
Q 009993 425 NLLSVDIGAD--RIVCGGEEGIVRIWNFS 451 (520)
Q Consensus 425 ~v~~~~~~~~--~l~sg~~Dg~v~iwd~~ 451 (520)
.|.++.++++ +|++|+.||+|++|+++
T Consensus 382 ~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 382 FVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 8888887655 99999999999999863
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.4e-42 Score=330.92 Aligned_cols=280 Identities=18% Similarity=0.285 Sum_probs=244.8
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV 212 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~ 212 (520)
.++|++|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+..|...|.++. |++++|++|+.|+.|++|++.
T Consensus 48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~ 127 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECc
Confidence 567899999999999999999999999999999999999999999999988877655 999999999999999999987
Q ss_pred cCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCE
Q 009993 213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTT 288 (520)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~ 288 (520)
+... .......+.+|.+.|.++.| +++.+++++.|++|++||+++++.+..+. |...|.++. |++++
T Consensus 128 ~~~~---------~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 198 (340)
T 1got_B 128 TREG---------NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198 (340)
T ss_dssp TCSB---------SCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred cCCC---------cceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCE
Confidence 6521 12345567899999999999 66789999999999999999999998887 889999987 78899
Q ss_pred EEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec--CCcC
Q 009993 289 VASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI--PHTG 365 (520)
Q Consensus 289 l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~--~h~~ 365 (520)
+++++ |+.|++||++++..+..+. +|...|++++|+|++++|++|+.||+|++||++.. ..+..+. .+..
T Consensus 199 l~sg~~d~~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~------~~~~~~~~~~~~~ 271 (340)
T 1got_B 199 FVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRAD------QELMTYSHDNIIC 271 (340)
T ss_dssp EEEEETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------EEEEEECCTTCCS
T ss_pred EEEEeCCCcEEEEECCCCeeEEEEc-CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC------cEEEEEccCCccc
Confidence 99999 9999999999999988887 69999999999999999999999999999999987 3444443 3445
Q ss_pred CEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EEEEecC
Q 009993 366 PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGE 441 (520)
Q Consensus 366 ~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~ 441 (520)
.|++++|+| .+|++|+.||.|++||+.+. .....+.+|...|.++.++++ +|++|+.
T Consensus 272 ~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-------------------~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 332 (340)
T 1got_B 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKA-------------------DRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTC-------------------CEEEEEECCSSCEEEEEECTTSSCEEEEET
T ss_pred ceEEEEECCCCCEEEEECCCCeEEEEEcccC-------------------cEeeEeecCCCcEEEEEEcCCCCEEEEEcC
Confidence 899999976 69999999999999999873 233456788888888877654 9999999
Q ss_pred CCeEEEEe
Q 009993 442 EGIVRIWN 449 (520)
Q Consensus 442 Dg~v~iwd 449 (520)
||+|+|||
T Consensus 333 D~~i~iWd 340 (340)
T 1got_B 333 DSFLKIWN 340 (340)
T ss_dssp TSCEEEEC
T ss_pred CccEEecC
Confidence 99999997
No 6
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.6e-42 Score=326.85 Aligned_cols=280 Identities=20% Similarity=0.250 Sum_probs=244.0
Q ss_pred HhhhhhccccccEEEEEEccC----CCEEEEEeCCCeEEEEECCCCcE--EEEeCCCCceEEEEe--cCCCEEEEEeCCC
Q 009993 133 ELIDVLYGHTEAVLTVFVLAS----AKLLFTSGYDSIVRMWHLEDGFS--IASSKPLGCTIRAVA--ADKKLLVAGGTDG 204 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~~~----~~~l~sgs~dg~v~vwd~~~~~~--~~~~~~~~~~v~~~~--~~~~~l~sg~~dg 204 (520)
.+.+.+++|.+.|++++|+|+ +.+|+||+.|++|+||++.++.. ...+.+|...|.++. +++..+++|+.|+
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 345677899999999999874 67999999999999999987754 456889999888776 8889999999999
Q ss_pred cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEE
Q 009993 205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYG 281 (520)
Q Consensus 205 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~ 281 (520)
+|++||+.++. ....+..|...+.+++| ++++|++|+.||.|++||+++++....+. +...|.+
T Consensus 103 ~i~lWd~~~~~-------------~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~ 169 (321)
T 3ow8_A 103 HIRLWDLENGK-------------QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILS 169 (321)
T ss_dssp EEEEEETTTTE-------------EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEE
T ss_pred cEEEEECCCCC-------------EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEE
Confidence 99999997763 45566778888999999 77899999999999999999999888876 7778888
Q ss_pred Ee--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeee
Q 009993 282 LA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA 358 (520)
Q Consensus 282 ~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~ 358 (520)
++ |++++|++++ |+.|++||+++++.+..+. +|..+|++++|+|++++|++|+.||.|++||+++. ....
T Consensus 170 ~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~------~~~~ 242 (321)
T 3ow8_A 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE-GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA------NLAG 242 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC------CEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc-ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc------ceeE
Confidence 77 8999999999 9999999999999998887 69999999999999999999999999999999988 6778
Q ss_pred eecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC--C
Q 009993 359 TWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--D 434 (520)
Q Consensus 359 ~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~ 434 (520)
.+.+|...|.+++|+| .+|++|+.|++|++||+++. .+...+.+|...|.++.+++ .
T Consensus 243 ~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~-------------------~~~~~~~~h~~~v~~v~~s~~g~ 303 (321)
T 3ow8_A 243 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR-------------------TCVHTFFDHQDQVWGVKYNGNGS 303 (321)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------------------EEEEEECCCSSCEEEEEECTTSS
T ss_pred EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-------------------EEEEEEcCCCCcEEEEEECCCCC
Confidence 8999999999999976 69999999999999999873 23344567888888887765 4
Q ss_pred EEEEecCCCeEEEEeCC
Q 009993 435 RIVCGGEEGIVRIWNFS 451 (520)
Q Consensus 435 ~l~sg~~Dg~v~iwd~~ 451 (520)
+|++++.||.|++||..
T Consensus 304 ~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 304 KIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEEETTCCEEEEECC
T ss_pred EEEEEeCCCeEEEEeCC
Confidence 99999999999999974
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.3e-42 Score=323.69 Aligned_cols=280 Identities=19% Similarity=0.253 Sum_probs=239.7
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcc
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAV 212 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~ 212 (520)
.++|.+|.+.|++++|+|++++|++|+.||+|++||+.++..+..+..|..++.++ .+++++|++|+.|++|++||+.
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~ 85 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 56789999999999999999999999999999999999999999999998887765 4999999999999999999998
Q ss_pred cCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcE-EEEee-eccCEEEEe--e-C
Q 009993 213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKC-LKVLR-HSDWVYGLA--P-H 285 (520)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~-~~~~v~~~~--~-~ 285 (520)
++. ....+.+|...|.+++| ++.+|++|+.|++|++||++++.. ...+. |...|.++. | +
T Consensus 86 ~~~-------------~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~ 152 (304)
T 2ynn_A 86 TGE-------------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152 (304)
T ss_dssp TCC-------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTC
T ss_pred CCc-------------EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCC
Confidence 763 55678899999999999 668999999999999999998744 44554 899999988 4 5
Q ss_pred CCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecC--CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecC
Q 009993 286 DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH--TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP 362 (520)
Q Consensus 286 ~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 362 (520)
+..+++++ |++|++||++++.....+..+|...+..+.|+| ++.+|++|+.|++|++||++++ .++.++.+
T Consensus 153 ~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~------~~~~~~~~ 226 (304)
T 2ynn_A 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK------SCVATLEG 226 (304)
T ss_dssp TTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT------EEEEEEEC
T ss_pred CCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC------ccceeeCC
Confidence 67899988 999999999998887777767778899999987 6789999999999999999998 78889999
Q ss_pred CcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC----EE
Q 009993 363 HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD----RI 436 (520)
Q Consensus 363 h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~l 436 (520)
|...|++++|+| ++|++|+.||+|++||+.+. .....+..|...+.++.+.+. ++
T Consensus 227 h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (304)
T 2ynn_A 227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY-------------------KVEKTLNVGLERSWCIATHPTGRKNYI 287 (304)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-------------------CEEEEECCSSSSEEEEEECTTCGGGCE
T ss_pred CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC-------------------ceeeeccCCCccEEEEEECCCCCceEE
Confidence 999999999987 58999999999999999873 333445566667777765442 57
Q ss_pred EEecCCCeEEEEeCCch
Q 009993 437 VCGGEEGIVRIWNFSQA 453 (520)
Q Consensus 437 ~sg~~Dg~v~iwd~~~~ 453 (520)
++|+.|| +.+|++.+.
T Consensus 288 asg~~~g-~~~~~~~~~ 303 (304)
T 2ynn_A 288 ASGFDNG-FTVLSLGND 303 (304)
T ss_dssp EEEETTE-EEEEECC--
T ss_pred EEecCCc-eEEEEeccC
Confidence 7777665 788887653
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.1e-40 Score=321.86 Aligned_cols=284 Identities=19% Similarity=0.252 Sum_probs=240.9
Q ss_pred HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEE--EecCCCEEEEEeCCCcEEEEE
Q 009993 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRA--VAADKKLLVAGGTDGFIHCWR 210 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~vwd 210 (520)
...++|+||.+.|++++|+|++++|+||+.||+|++||..+++....+..|...|.+ ++|++..+++|+.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 346789999999999999999999999999999999999999988888877766655 459999999999999999999
Q ss_pred cccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--e-
Q 009993 211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--P- 284 (520)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~- 284 (520)
+...... ........+.+|...|.+++| ++..|++++.|++|++||+++++++..+. |...|.++. +
T Consensus 135 ~~~~~~~-------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~ 207 (354)
T 2pbi_B 135 LTFDKNE-------NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS 207 (354)
T ss_dssp CCCCTTC-------CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCC
T ss_pred Eeccccc-------cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeC
Confidence 8654210 112345567789999999999 66799999999999999999999999887 888898876 3
Q ss_pred -CCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecC
Q 009993 285 -HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP 362 (520)
Q Consensus 285 -~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 362 (520)
+++++++++ |+.|++||+++++++..+. +|...|++++|+|++.+|++|+.|++|++||++.. ..+..+..
T Consensus 208 ~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~------~~~~~~~~ 280 (354)
T 2pbi_B 208 ETGNTFVSGGCDKKAMVWDMRSGQCVQAFE-THESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD------REVAIYSK 280 (354)
T ss_dssp SSCCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------EEEEEECC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC------cEEEEEcC
Confidence 568999998 9999999999999998886 69999999999999999999999999999999887 34444433
Q ss_pred --CcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC--CEE
Q 009993 363 --HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRI 436 (520)
Q Consensus 363 --h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l 436 (520)
+...+++++|+| .+|++|+.|+.|++||+.++ .....+.+|...|.++.+++ .+|
T Consensus 281 ~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-------------------~~~~~l~~h~~~v~~l~~spdg~~l 341 (354)
T 2pbi_B 281 ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG-------------------SRVSILFGHENRVSTLRVSPDGTAF 341 (354)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-------------------SEEEEECCCSSCEEEEEECTTSSCE
T ss_pred CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC-------------------ceEEEEECCCCcEEEEEECCCCCEE
Confidence 345789999975 79999999999999999773 22344567888887777655 499
Q ss_pred EEecCCCeEEEEe
Q 009993 437 VCGGEEGIVRIWN 449 (520)
Q Consensus 437 ~sg~~Dg~v~iwd 449 (520)
++|+.||+|++|+
T Consensus 342 ~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 342 CSGSWDHTLRVWA 354 (354)
T ss_dssp EEEETTSEEEEEC
T ss_pred EEEcCCCCEEecC
Confidence 9999999999996
No 9
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=7.8e-42 Score=333.59 Aligned_cols=293 Identities=18% Similarity=0.228 Sum_probs=238.9
Q ss_pred hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEE--EecCCCEEEEEeCCCcEEEEEc
Q 009993 134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRA--VAADKKLLVAGGTDGFIHCWRA 211 (520)
Q Consensus 134 ~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~vwd~ 211 (520)
+.++|+||.+.|++++|+|++++|+||+.|++|+|||+.+++....+..|...|.+ ++|++++|++|+.|+.|++||+
T Consensus 58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~ 137 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL 137 (380)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence 46789999999999999999999999999999999999999999999998877764 5599999999999999999998
Q ss_pred ccCcceeeeccCCccccceEEeccCCCCeEEEEEc---CCEEEEEecCCeEEEEECCCCcEEEEee------eccCEEEE
Q 009993 212 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD---LTRIYSGSWDMTVRVWDRALLKCLKVLR------HSDWVYGL 282 (520)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~v~iwd~~~~~~~~~~~------~~~~v~~~ 282 (520)
.+.... .........+.+|.+.|.++.|. +..|++|+.|++|++||+++++.+..+. |...|.++
T Consensus 138 ~~~~~~------~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~ 211 (380)
T 3iz6_a 138 SSQADR------DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL 211 (380)
T ss_dssp CCCSSC------CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEE
T ss_pred CCCccc------cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEE
Confidence 654210 01122344577999999999993 4679999999999999999999988772 77889988
Q ss_pred e---eCCCEEEEEc-CCeEEEEECCC-CeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeee
Q 009993 283 A---PHDTTVASTS-GSDVYIWDTNS-GCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV 357 (520)
Q Consensus 283 ~---~~~~~l~~~~-d~~i~iwd~~~-~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~ 357 (520)
. ++++++++|+ |+.|++||++. +..+..+. +|.+.|++++|+|++.+|++|+.||+|++||++++ ..+
T Consensus 212 ~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~------~~~ 284 (380)
T 3iz6_a 212 SINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH-GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG------HQL 284 (380)
T ss_dssp EECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC-CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT------EEE
T ss_pred EeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC-CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC------cEE
Confidence 7 3788999999 99999999984 46666665 79999999999999999999999999999999988 445
Q ss_pred eeecCC-------cCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEE
Q 009993 358 ATWIPH-------TGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLS 428 (520)
Q Consensus 358 ~~~~~h-------~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 428 (520)
..+..+ ...|++++|+| .+|++|+.||.|++||+.+..... .......+|...|.+
T Consensus 285 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~---------------~~~~~~~~h~~~v~~ 349 (380)
T 3iz6_a 285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVL---------------NLGTLQNSHEGRISC 349 (380)
T ss_dssp EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEE---------------EECCSCSSCCCCCCE
T ss_pred EEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEE---------------EEecccCCCCCceEE
Confidence 554433 23589999976 799999999999999987642111 001112456666666
Q ss_pred EEe--cCCEEEEecCCCeEEEEeCCchH
Q 009993 429 VDI--GADRIVCGGEEGIVRIWNFSQAF 454 (520)
Q Consensus 429 ~~~--~~~~l~sg~~Dg~v~iwd~~~~~ 454 (520)
+.+ ++.+|++|+.||+|++|++....
T Consensus 350 l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 350 LGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 555 55699999999999999998653
No 10
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-40 Score=319.39 Aligned_cols=303 Identities=19% Similarity=0.254 Sum_probs=238.5
Q ss_pred hhhhhccccc-cEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEE---EeCCCCceEEEEe--cCCCEEEEEeCCCcEE
Q 009993 134 LIDVLYGHTE-AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA---SSKPLGCTIRAVA--ADKKLLVAGGTDGFIH 207 (520)
Q Consensus 134 ~~~~l~~h~~-~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~---~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~ 207 (520)
++.++.+|.+ .|++++|+|+|++|++|+.|++|+|||+.++.... ...+|...|.++. |++++|++|+.|++|+
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~ 86 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTC 86 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEE
Confidence 4667889998 99999999999999999999999999998876432 2367888887765 8999999999999999
Q ss_pred EEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCc---EEEEee-eccCEEE
Q 009993 208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLK---CLKVLR-HSDWVYG 281 (520)
Q Consensus 208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~-~~~~v~~ 281 (520)
+||+.++. ......+.+|...|.+++| ++++|++|+.|++|++||++++. ++..+. |...|.+
T Consensus 87 iw~~~~~~-----------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~ 155 (345)
T 3fm0_A 87 IWKKNQDD-----------FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKH 155 (345)
T ss_dssp EEEECCC------------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEE
T ss_pred EEEccCCC-----------eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEE
Confidence 99986542 2345678899999999999 67899999999999999998764 344444 8888998
Q ss_pred Ee--eCCCEEEEEc-CCeEEEEECCCCee--eEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcccc----
Q 009993 282 LA--PHDTTVASTS-GSDVYIWDTNSGCL--LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA---- 352 (520)
Q Consensus 282 ~~--~~~~~l~~~~-d~~i~iwd~~~~~~--~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~---- 352 (520)
+. |++.+|++++ |+.|++||.+++.. ...+. +|...|++++|+|++++|++|+.|++|++||........
T Consensus 156 ~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~-~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~ 234 (345)
T 3fm0_A 156 VVWHPSQELLASASYDDTVKLYREEEDDWVCCATLE-GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVAC 234 (345)
T ss_dssp EEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCC
T ss_pred EEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEec-CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCcccee
Confidence 87 8899999999 99999999988753 34554 799999999999999999999999999999975432211
Q ss_pred -----ceeeeeeecC-CcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcce
Q 009993 353 -----NVLLVATWIP-HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC 424 (520)
Q Consensus 353 -----~~~~~~~~~~-h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (520)
...++..+.+ |...|++++|++ ..|++++.|+.|++|+........... . ........+|..
T Consensus 235 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~-----~-----~~~~~~~~~h~~ 304 (345)
T 3fm0_A 235 SGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPT-----F-----SLTAHLHQAHSQ 304 (345)
T ss_dssp C---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCC-----E-----EEEEEETTSSSS
T ss_pred eccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceee-----E-----EEEeeecccccC
Confidence 1233445555 889999999976 699999999999999987642211000 0 001122357888
Q ss_pred eeEEEEecCC---EEEEecCCCeEEEEeCCchHhHHH
Q 009993 425 NLLSVDIGAD---RIVCGGEEGIVRIWNFSQAFEIER 458 (520)
Q Consensus 425 ~v~~~~~~~~---~l~sg~~Dg~v~iwd~~~~~~~~~ 458 (520)
.|.++.|+++ +|++|+.||+|++|++.+++.+.+
T Consensus 305 ~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 305 DVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp CEEEEEECSSSTTEEEEEETTSCEEEEEECC------
T ss_pred cEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence 8888888753 899999999999999998776544
No 11
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.1e-40 Score=343.76 Aligned_cols=352 Identities=19% Similarity=0.236 Sum_probs=267.7
Q ss_pred hhhhhcCCCCCCCCCCCCCC-----CcccHH--HhhhhhccccccEEEEEEccCCC-EEEEEeCCCeEEEEECCCCcEEE
Q 009993 107 FYCERWGLPIASAPLGAGFS-----DDKSWK--ELIDVLYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIA 178 (520)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~-----~~~~W~--~~~~~l~~h~~~V~~l~~~~~~~-~l~sgs~dg~v~vwd~~~~~~~~ 178 (520)
+.+..|. |+.......+.. ..+.|+ +...++.+|.+.|++++|+|++. .|++|+.|++|++||..+++.+.
T Consensus 106 v~~v~fs-~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~ 184 (611)
T 1nr0_A 106 VKDISWD-SESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS 184 (611)
T ss_dssp EEEEEEC-TTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE
T ss_pred eEEEEEC-CCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEee
Confidence 3455666 454444333322 346787 45677899999999999999987 69999999999999999999999
Q ss_pred EeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEe-------ccCCCCeEEEEE--cC
Q 009993 179 SSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL-------WEHEGPITSLAL--DL 247 (520)
Q Consensus 179 ~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-------~~h~~~v~~l~~--~~ 247 (520)
.+.+|...|.++. |++++|++|+.|++|++||+.++.. ...+ .+|.+.|.+++| ++
T Consensus 185 ~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~-------------~~~~~~~~~~~~~h~~~V~~v~~spdg 251 (611)
T 1nr0_A 185 TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK-------------TGVFEDDSLKNVAHSGSVFGLTWSPDG 251 (611)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-------------EEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred eeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE-------------eeeeccccccccccCCCEEEEEECCCC
Confidence 9999999888765 9999999999999999999877642 2222 279999999999 77
Q ss_pred CEEEEEecCCeEEEEECCCCcEEEEe--------------------------------------------eeccCEEEEe
Q 009993 248 TRIYSGSWDMTVRVWDRALLKCLKVL--------------------------------------------RHSDWVYGLA 283 (520)
Q Consensus 248 ~~l~s~s~dg~v~iwd~~~~~~~~~~--------------------------------------------~~~~~v~~~~ 283 (520)
.+|++++.|++|++||+.+++++..+ .|...|.+++
T Consensus 252 ~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~ 331 (611)
T 1nr0_A 252 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALS 331 (611)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEE
Confidence 89999999999999999987765433 2667788877
Q ss_pred --eCCCEEEEEc-CCeEEEEECCCCeeeEEeec-----------------------------------------------
Q 009993 284 --PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG----------------------------------------------- 313 (520)
Q Consensus 284 --~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~----------------------------------------------- 313 (520)
|++++|++++ |+.|++||+.+++....+..
T Consensus 332 ~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~ 411 (611)
T 1nr0_A 332 SSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLS 411 (611)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECS
T ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecC
Confidence 8899999999 99999999987654322100
Q ss_pred ----------------------------------ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeee
Q 009993 314 ----------------------------------AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT 359 (520)
Q Consensus 314 ----------------------------------~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~ 359 (520)
.|...+.+++|+|+|++|++|+.|++|++||+.+... .....
T Consensus 412 ~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~----~~~~~ 487 (611)
T 1nr0_A 412 SQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV----SEVKT 487 (611)
T ss_dssp SCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE----EEEEE
T ss_pred CCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCce----eeeec
Confidence 0224567899999999999999999999999987621 22333
Q ss_pred ecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC--CE
Q 009993 360 WIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DR 435 (520)
Q Consensus 360 ~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~ 435 (520)
.+|...|++++|+| ++|++++.|++|++||+.+..... . .....+|...|.+++|++ ++
T Consensus 488 -~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~--------------~--~~~~~~H~~~V~~v~fspdg~~ 550 (611)
T 1nr0_A 488 -IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA--------------H--TNSWTFHTAKVACVSWSPDNVR 550 (611)
T ss_dssp -EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES--------------C--CCCCCCCSSCEEEEEECTTSSE
T ss_pred -cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCcee--------------e--eeeeeecccceeEEEECCCCCE
Confidence 67999999999977 699999999999999998621110 0 001234777777777655 49
Q ss_pred EEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhh-hhccceeeeccCCCcccccccccccCCCCCCcceeeec
Q 009993 436 IVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRM-RRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHN 510 (520)
Q Consensus 436 l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~g~~~~~~s~~~~~~~~~~~~~~~~~~ 510 (520)
|++|+.|++|++||+.++.... ......+ ...+..++|+|||. +++++.+ .+..+|..
T Consensus 551 lasgs~D~~v~lW~~~~~~~~~--------~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D--------~~i~lW~~ 609 (611)
T 1nr0_A 551 LATGSLDNSVIVWNMNKPSDHP--------IIIKGAHAMSSVNSVIWLNETT-IVSAGQD--------SNIKFWNV 609 (611)
T ss_dssp EEEEETTSCEEEEETTCTTSCC--------EEETTSSTTSCEEEEEEEETTE-EEEEETT--------SCEEEEEC
T ss_pred EEEEECCCcEEEEECCCccccc--------chhhccCcccCeeEEEEcCCCE-EEEecCC--------CCEEEEec
Confidence 9999999999999998754210 0111223 45678999999998 8877642 22467764
No 12
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=9.5e-40 Score=310.11 Aligned_cols=280 Identities=24% Similarity=0.349 Sum_probs=243.7
Q ss_pred hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009993 134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA 211 (520)
Q Consensus 134 ~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~ 211 (520)
+..++.+|.+.|++++|+|++++|++|+.||.|++|++.+++....+.+|...|.++. +++++|++|+.||.|++||+
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 94 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 94 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence 3567889999999999999999999999999999999999999999999998887765 89999999999999999999
Q ss_pred ccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCC
Q 009993 212 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHD 286 (520)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~ 286 (520)
.++. ....+.+|...|.+++| +++++++|+.|++|++||+++++.+..+. |...|.++. +++
T Consensus 95 ~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (312)
T 4ery_A 95 SSGK-------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 161 (312)
T ss_dssp TTCC-------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred CCCc-------------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCC
Confidence 7753 45677889999999999 67899999999999999999999988887 888898887 788
Q ss_pred CEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcC
Q 009993 287 TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG 365 (520)
Q Consensus 287 ~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 365 (520)
.++++++ |+.|++||+++++.+..+...+...+..++|+|++++|++++.||.|++||++++ ..+..+.+|..
T Consensus 162 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~ 235 (312)
T 4ery_A 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG------KCLKTYTGHKN 235 (312)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT------EEEEEECSSCC
T ss_pred CEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC------cEEEEEEecCC
Confidence 9999998 9999999999999888876667788999999999999999999999999999988 67777888876
Q ss_pred CEEEE--Ee---cCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EEEE
Q 009993 366 PVNSL--AF---EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVC 438 (520)
Q Consensus 366 ~v~~l--~~---~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s 438 (520)
.+.++ .+ ++.+|++|+.||.|++||+.+. .....+.+|...|.++.++++ ++++
T Consensus 236 ~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-------------------~~~~~~~~h~~~v~~~~~~p~~~~l~s 296 (312)
T 4ery_A 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK-------------------EIVQKLQGHTDVVISTACHPTENIIAS 296 (312)
T ss_dssp SSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred ceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc-------------------hhhhhhhccCCcEEEEeecCcCCceEE
Confidence 54332 23 2479999999999999999873 334456788888888777654 8888
Q ss_pred ec--CCCeEEEEeCC
Q 009993 439 GG--EEGIVRIWNFS 451 (520)
Q Consensus 439 g~--~Dg~v~iwd~~ 451 (520)
++ .||+|++|+.+
T Consensus 297 ~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 297 AALENDKTIKLWKSD 311 (312)
T ss_dssp EECTTTCCEEEEECC
T ss_pred EEccCCccEEEecCC
Confidence 86 69999999864
No 13
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.5e-40 Score=343.14 Aligned_cols=360 Identities=15% Similarity=0.191 Sum_probs=266.3
Q ss_pred hhcCCCCCCCCCCCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc--EEEEeCCC
Q 009993 110 ERWGLPIASAPLGAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPL 183 (520)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~--~~~~~~~~ 183 (520)
..|. |+............++|+ ....+|.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++ ....+.+|
T Consensus 24 ~~~s-pdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~ 102 (611)
T 1nr0_A 24 LGNT-PAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF 102 (611)
T ss_dssp CEEC-TTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECS
T ss_pred EeeC-CCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeeccc
Confidence 3344 444333333334557786 4567789999999999999999999999999999999997543 45577888
Q ss_pred CceEEEEe--cCCCEEEEEeCC----CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc--CC-EEEEEe
Q 009993 184 GCTIRAVA--ADKKLLVAGGTD----GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LT-RIYSGS 254 (520)
Q Consensus 184 ~~~v~~~~--~~~~~l~sg~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~s 254 (520)
...|.+++ |+++.|++++.+ +.|++||..+ ....+.+|...|.+++|. +. .|++|+
T Consensus 103 ~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~---------------~~~~l~gh~~~v~~v~f~p~~~~~l~s~s 167 (611)
T 1nr0_A 103 SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT---------------SNGNLTGQARAMNSVDFKPSRPFRIISGS 167 (611)
T ss_dssp SSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC---------------BCBCCCCCSSCEEEEEECSSSSCEEEEEE
T ss_pred CCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC---------------CcceecCCCCCceEEEECCCCCeEEEEEe
Confidence 88887765 999999998875 4677777422 233567899999999994 33 699999
Q ss_pred cCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeec------ccccceEEEEe
Q 009993 255 WDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG------AHVGNTKSLAR 324 (520)
Q Consensus 255 ~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~------~~~~~i~~l~~ 324 (520)
.|++|++||..++++...+. |...|.+++ |++++|++++ |++|++||+.+++.+..+.. +|.+.|.+++|
T Consensus 168 ~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~ 247 (611)
T 1nr0_A 168 DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW 247 (611)
T ss_dssp TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEE
T ss_pred CCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEE
Confidence 99999999999998888887 999999987 8999999999 99999999999998887743 69999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcccCccccce-------------------------------------eeeeeecCCcCCE
Q 009993 325 SHTGDFLFTGGEDGAIHMYEIINDCTEANV-------------------------------------LLVATWIPHTGPV 367 (520)
Q Consensus 325 s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~-------------------------------------~~~~~~~~h~~~v 367 (520)
+|++++|++++.|++|++||+.++...... .....+.+|...|
T Consensus 248 spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v 327 (611)
T 1nr0_A 248 SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAI 327 (611)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCE
Confidence 999999999999999999999876422111 1234567899999
Q ss_pred EEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCC--CCceee-------------------eee-------------
Q 009993 368 NSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTS--GKRVSR-------------------VIE------------- 411 (520)
Q Consensus 368 ~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~~~-------------------~~~------------- 411 (520)
++++|+| ++|++++.|++|++||+.++........ ...+.. +..
T Consensus 328 ~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~ 407 (611)
T 1nr0_A 328 TALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVA 407 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCE
T ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceee
Confidence 9999976 6999999999999999987543221100 000000 000
Q ss_pred -----------cCCC-------------------ccc-ccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHh
Q 009993 412 -----------VEPP-------------------QRM-LHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRA 460 (520)
Q Consensus 412 -----------~~~~-------------------~~~-~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~ 460 (520)
+.+. ... .+.......++++++.+|++|+.||+|++||+.++...
T Consensus 408 ~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~---- 483 (611)
T 1nr0_A 408 NKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVS---- 483 (611)
T ss_dssp EECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEE----
T ss_pred eecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCcee----
Confidence 0000 000 00112234455566779999999999999999764210
Q ss_pred hhhcccccchhhhhccceeeeccCCCcccccccc
Q 009993 461 RALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVA 494 (520)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~ 494 (520)
.... ..+...+..++|+|||+.+++++.+
T Consensus 484 ----~~~~-~~h~~~v~~v~fspdg~~las~s~d 512 (611)
T 1nr0_A 484 ----EVKT-IVHPAEITSVAFSNNGAFLVATDQS 512 (611)
T ss_dssp ----EEEE-EECSSCEEEEEECTTSSEEEEEETT
T ss_pred ----eeec-cCCCCceEEEEECCCCCEEEEEcCC
Confidence 0011 2234557899999999999987743
No 14
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.4e-39 Score=309.63 Aligned_cols=285 Identities=24% Similarity=0.385 Sum_probs=229.2
Q ss_pred hhhhhccccccEEEEEEccCC-CEEEEEeCCCeEEEEECCC-----CcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCc
Q 009993 134 LIDVLYGHTEAVLTVFVLASA-KLLFTSGYDSIVRMWHLED-----GFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGF 205 (520)
Q Consensus 134 ~~~~l~~h~~~V~~l~~~~~~-~~l~sgs~dg~v~vwd~~~-----~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~ 205 (520)
+..+|+||.+.|++++|+|++ ++|+||+.|++|++|++.. +.++..+.+|...|.++. +++.+|++|+.|++
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~ 88 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKT 88 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCE
Confidence 356789999999999999965 8999999999999999864 345678889998887665 89999999999999
Q ss_pred EEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEe-eeccCEEEE
Q 009993 206 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGL 282 (520)
Q Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~v~~~ 282 (520)
|++||+.++. ....+.+|...|.+++| ++.++++|+.|++|++||++.. ++..+ .|...|.++
T Consensus 89 v~~wd~~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~~~~~h~~~v~~~ 154 (319)
T 3frx_A 89 LRLWDVATGE-------------TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQV 154 (319)
T ss_dssp EEEEETTTTE-------------EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEE
T ss_pred EEEEECCCCC-------------eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEeccCCcEEEE
Confidence 9999998763 45677899999999999 6789999999999999999754 44444 488999988
Q ss_pred e--e------CCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccc
Q 009993 283 A--P------HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN 353 (520)
Q Consensus 283 ~--~------~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~ 353 (520)
. | ++..+++++ |+.|++||+++++....+. +|...|.+++|+|++++|++|+.||.|++||+.+.
T Consensus 155 ~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~----- 228 (319)
T 3frx_A 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK----- 228 (319)
T ss_dssp EECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-----
T ss_pred EEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----
Confidence 7 3 344788888 9999999999999888886 69999999999999999999999999999999988
Q ss_pred eeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCC-cccccCcceeeE--E
Q 009993 354 VLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPP-QRMLHGFECNLL--S 428 (520)
Q Consensus 354 ~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~--~ 428 (520)
..+..+..+ ..|.+++|+| .+|++++. +.+++|++....... .+.+. ......+...+. +
T Consensus 229 -~~~~~~~~~-~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~------------~~~~~~~~~~~~~~~~v~~~~ 293 (319)
T 3frx_A 229 -KAMYTLSAQ-DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVD------------DLRPEFAGYSKAAEPHAVSLA 293 (319)
T ss_dssp -EEEEEEECC-SCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEE------------EECCCCTTCCGGGCCCEEEEE
T ss_pred -cEEEEecCC-CcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeee------------ccCccccccccCcCcceeEEE
Confidence 566666554 6899999987 46776665 459999987642211 11111 111123344444 4
Q ss_pred EEecCCEEEEecCCCeEEEEeCCch
Q 009993 429 VDIGADRIVCGGEEGIVRIWNFSQA 453 (520)
Q Consensus 429 ~~~~~~~l~sg~~Dg~v~iwd~~~~ 453 (520)
+++++++|++|+.||.|++||+.++
T Consensus 294 ~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 294 WSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp ECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred ECCCCCEEEEeecCceEEEEEEeec
Confidence 5556669999999999999998764
No 15
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.5e-39 Score=318.94 Aligned_cols=281 Identities=25% Similarity=0.382 Sum_probs=235.5
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCc------------------eEE--EEecCCCEEEE
Q 009993 140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC------------------TIR--AVAADKKLLVA 199 (520)
Q Consensus 140 ~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~------------------~v~--~~~~~~~~l~s 199 (520)
+|.+.|++++|+|+|++|++|+ |+++++|++.+++.+..+..+.. .|. ++++++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999987 78999999999998887765532 244 45599999999
Q ss_pred EeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeecc
Q 009993 200 GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSD 277 (520)
Q Consensus 200 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 277 (520)
|+.||.|++||+.++. ....+.+|...|.+++| ++++|++++.|++|++||++++++...+.+..
T Consensus 141 ~~~d~~i~iwd~~~~~-------------~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~ 207 (393)
T 1erj_A 141 GAEDRLIRIWDIENRK-------------IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED 207 (393)
T ss_dssp EETTSCEEEEETTTTE-------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred EcCCCeEEEEECCCCc-------------EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCC
Confidence 9999999999997652 45677899999999999 77899999999999999999999998888888
Q ss_pred CEEEEe--e-CCCEEEEEc-CCeEEEEECCCCeeeEEee------cccccceEEEEecCCCCEEEEEeCCCeEEEEEccc
Q 009993 278 WVYGLA--P-HDTTVASTS-GSDVYIWDTNSGCLLTVVN------GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIN 347 (520)
Q Consensus 278 ~v~~~~--~-~~~~l~~~~-d~~i~iwd~~~~~~~~~~~------~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~ 347 (520)
.+.++. + +++++++++ |+.|++||++++..+..+. .+|...|++++|+|++++|++|+.||.|++||+++
T Consensus 208 ~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 208 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 888877 5 789999999 9999999999998877663 36889999999999999999999999999999986
Q ss_pred Ccccc------ceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccc
Q 009993 348 DCTEA------NVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML 419 (520)
Q Consensus 348 ~~~~~------~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (520)
..... ...+...+.+|...|.+++|++ .+|++|+.||.|++||+.++ .+...+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~-------------------~~~~~l 348 (393)
T 1erj_A 288 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-------------------NPLLML 348 (393)
T ss_dssp -------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-------------------CEEEEE
T ss_pred CCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-------------------eEEEEE
Confidence 53211 1234567789999999999965 79999999999999999873 334456
Q ss_pred cCcceeeEEEEec--------CCEEEEecCCCeEEEEeCCch
Q 009993 420 HGFECNLLSVDIG--------ADRIVCGGEEGIVRIWNFSQA 453 (520)
Q Consensus 420 ~~~~~~v~~~~~~--------~~~l~sg~~Dg~v~iwd~~~~ 453 (520)
.+|...|.++.+. +.+|+||+.||+|+||++...
T Consensus 349 ~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 349 QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 7888888888865 358999999999999998653
No 16
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.8e-40 Score=319.45 Aligned_cols=299 Identities=20% Similarity=0.259 Sum_probs=222.1
Q ss_pred CCCCCCcccHHHhhhhhccccccEEEEEEccCCCEEEEEeC------CCeEEEEECCCCcEEEE----eCCCCceEEEEe
Q 009993 122 GAGFSDDKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGY------DSIVRMWHLEDGFSIAS----SKPLGCTIRAVA 191 (520)
Q Consensus 122 ~~~~~~~~~W~~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~------dg~v~vwd~~~~~~~~~----~~~~~~~v~~~~ 191 (520)
..+....+.|+.......+|.+.|++++|+|||++|++|+. |+.|++|+..++..... ..+|...|.++.
T Consensus 22 ~~g~~~~~~w~~p~~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~ 101 (357)
T 4g56_B 22 SNGSSKGSAWGRPVTAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVA 101 (357)
T ss_dssp ------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEE
T ss_pred cCCCccccccCCCCCCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEE
Confidence 34555668898777777899999999999999999999997 78899999887754332 345766777665
Q ss_pred --cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCC
Q 009993 192 --ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALL 267 (520)
Q Consensus 192 --~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~ 267 (520)
|++ .+++++.||+|++||+.++... ........+|...|++++| ++++|++|+.|++|++||++++
T Consensus 102 ~s~d~-~~l~~s~dg~v~lWd~~~~~~~---------~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~ 171 (357)
T 4g56_B 102 WVSEK-GILVASDSGAVELWEILEKESL---------LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK 171 (357)
T ss_dssp EETTT-EEEEEETTSCEEEC-----------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT
T ss_pred EcCCC-CEEEEECCCEEEEeecccccee---------EEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 765 5667889999999999876421 1233456689999999999 7789999999999999999999
Q ss_pred cEEEEee-eccCEEEEe--eCC-CEEEEEc-CCeEEEEECCCCeeeEEee-cccccceEEEEecCC-CCEEEEEeCCCeE
Q 009993 268 KCLKVLR-HSDWVYGLA--PHD-TTVASTS-GSDVYIWDTNSGCLLTVVN-GAHVGNTKSLARSHT-GDFLFTGGEDGAI 340 (520)
Q Consensus 268 ~~~~~~~-~~~~v~~~~--~~~-~~l~~~~-d~~i~iwd~~~~~~~~~~~-~~~~~~i~~l~~s~~-~~~l~tg~~dg~i 340 (520)
+++..+. |...|.++. +++ .++++++ |+.|++||+++++....+. ..|...+++++|+|+ +.+|++|+.|+.|
T Consensus 172 ~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i 251 (357)
T 4g56_B 172 AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNV 251 (357)
T ss_dssp EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCE
T ss_pred cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccce
Confidence 9999887 899999987 454 4677777 9999999999988776554 246778999999997 4689999999999
Q ss_pred EEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcc
Q 009993 341 HMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQR 417 (520)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (520)
++||++++ ..+..+.+|...|++++|+| .+|++|+.||+|+|||++++. ...
T Consensus 252 ~~wd~~~~------~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~-------------------~~~ 306 (357)
T 4g56_B 252 SLVNIKNP------DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE-------------------VFR 306 (357)
T ss_dssp EEEESSCG------GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE-------------------EEE
T ss_pred eEEECCCC------cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc-------------------EeE
Confidence 99999988 67888999999999999976 479999999999999998742 111
Q ss_pred cccCcceeeEEEEec---CCEEEEecCCCeEEEEeCCchHhH
Q 009993 418 MLHGFECNLLSVDIG---ADRIVCGGEEGIVRIWNFSQAFEI 456 (520)
Q Consensus 418 ~~~~~~~~v~~~~~~---~~~l~sg~~Dg~v~iwd~~~~~~~ 456 (520)
..+|...|.+++|+ +.+|+|||.||+|++|++......
T Consensus 307 -~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 307 -DLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp -ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred -ECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence 23678888888875 459999999999999999865443
No 17
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.6e-40 Score=314.84 Aligned_cols=290 Identities=18% Similarity=0.205 Sum_probs=224.1
Q ss_pred ccHHHhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC-----------cEEEEeCCCCceEEEEe--cCCC
Q 009993 129 KSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-----------FSIASSKPLGCTIRAVA--ADKK 195 (520)
Q Consensus 129 ~~W~~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~-----------~~~~~~~~~~~~v~~~~--~~~~ 195 (520)
+.|+-.......|...|.+++|+|||++|++++ |+++++||.... ........+...|.++. ++ .
T Consensus 17 r~w~~~~~~~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~ 94 (344)
T 4gqb_B 17 REWNLPPNAPACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE-R 94 (344)
T ss_dssp ------CCSCSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT-T
T ss_pred cccCCCCCCcccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC-C
Confidence 456544445567888899999999999999888 778888873211 00111112334566555 65 5
Q ss_pred EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEe
Q 009993 196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL 273 (520)
Q Consensus 196 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 273 (520)
.|++|+.||+|++||+.++... ......+.+|.+.|++++| ++++|++|+.|++|++||+++++++..+
T Consensus 95 ~l~~~s~dg~v~lWd~~~~~~~---------~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~ 165 (344)
T 4gqb_B 95 GILVASDSGAVELWELDENETL---------IVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY 165 (344)
T ss_dssp EEEEEETTSEEEEEEECTTSSC---------EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred eEEEEECCCEEEEEeccCCCce---------eEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 7889999999999999876421 1223456689999999999 7899999999999999999999999998
Q ss_pred e-eccCEEEEe--eCC-CEEEEEc-CCeEEEEECCCCeeeEEeec-ccccceEEEEecCC-CCEEEEEeCCCeEEEEEcc
Q 009993 274 R-HSDWVYGLA--PHD-TTVASTS-GSDVYIWDTNSGCLLTVVNG-AHVGNTKSLARSHT-GDFLFTGGEDGAIHMYEII 346 (520)
Q Consensus 274 ~-~~~~v~~~~--~~~-~~l~~~~-d~~i~iwd~~~~~~~~~~~~-~~~~~i~~l~~s~~-~~~l~tg~~dg~i~iwd~~ 346 (520)
. |...|.++. +++ .++++++ |+.|++||+++++....+.. .|...+.+++|+|+ +.+|++|+.||.|++||++
T Consensus 166 ~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~ 245 (344)
T 4gqb_B 166 RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK 245 (344)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence 7 999999988 555 5778888 99999999999988877652 35567999999995 5688999999999999999
Q ss_pred cCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcc
Q 009993 347 NDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE 423 (520)
Q Consensus 347 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (520)
++ .++.++.+|...|++++|+| .+|++|+.|++|+|||+.++. ...+.+|.
T Consensus 246 ~~------~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~--------------------~~~~~~H~ 299 (344)
T 4gqb_B 246 ST------SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE--------------------LFRSQAHR 299 (344)
T ss_dssp C--------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE--------------------EEEECCCS
T ss_pred CC------cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc--------------------EEEEcCCC
Confidence 88 77888999999999999976 479999999999999998631 11246788
Q ss_pred eeeEEEEecC--C-EEEEecCCCeEEEEeCCchHh
Q 009993 424 CNLLSVDIGA--D-RIVCGGEEGIVRIWNFSQAFE 455 (520)
Q Consensus 424 ~~v~~~~~~~--~-~l~sg~~Dg~v~iwd~~~~~~ 455 (520)
..|.++.|++ . +|++||.||+|++|++.++..
T Consensus 300 ~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 300 DFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp SCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred CCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 8898888764 3 788999999999999987543
No 18
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=8.6e-39 Score=307.65 Aligned_cols=292 Identities=18% Similarity=0.299 Sum_probs=226.0
Q ss_pred HhhhhhccccccEEEEEE-----cc-CCCEEEEEeCCCeEEEEECCCC-------cEEEEeCCCCceEEEEe--cCCCEE
Q 009993 133 ELIDVLYGHTEAVLTVFV-----LA-SAKLLFTSGYDSIVRMWHLEDG-------FSIASSKPLGCTIRAVA--ADKKLL 197 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~-----~~-~~~~l~sgs~dg~v~vwd~~~~-------~~~~~~~~~~~~v~~~~--~~~~~l 197 (520)
.+..+|+||.+.|++++| ++ ++++|+||+.|++|++||+.++ .....+.+|...|.++. +++.++
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 346689999999999999 76 8999999999999999999753 45677889998888765 899999
Q ss_pred EEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEe--
Q 009993 198 VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL-- 273 (520)
Q Consensus 198 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~-- 273 (520)
++|+.|++|++||+.++. ....+.+|...|.+++| ++++|++++.|++|++||+.........
T Consensus 92 ~s~s~D~~v~lwd~~~~~-------------~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 158 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGT-------------TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEK 158 (343)
T ss_dssp EEEETTSEEEEEETTSSC-------------EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTT
T ss_pred EEEcCCCcEEEEECCCCc-------------EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecc
Confidence 999999999999998763 45677899999999999 6789999999999999999844333322
Q ss_pred -eeccCEEEEe--eCC----------CEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCe
Q 009993 274 -RHSDWVYGLA--PHD----------TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA 339 (520)
Q Consensus 274 -~~~~~v~~~~--~~~----------~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~ 339 (520)
.|...|.++. +++ .++++++ |+.|++||. ..+....+. +|...|.+++|+|+|++|++|+.||.
T Consensus 159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~-~h~~~v~~~~~s~~g~~l~sgs~dg~ 236 (343)
T 2xzm_R 159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFK-AHESNVNHLSISPNGKYIATGGKDKK 236 (343)
T ss_dssp TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred cCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEc-CccccceEEEECCCCCEEEEEcCCCe
Confidence 3778888887 443 6888888 999999994 455666665 69999999999999999999999999
Q ss_pred EEEEEcccCccccceeeeeeecCCcCCEEEEEecCC-EEEEEeCCCcEEEEeCCcccccC--CCCCCCceeeeeecCCCc
Q 009993 340 IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP-WLVSAAGDGKLSLIDVRKLLRSG--RPTSGKRVSRVIEVEPPQ 416 (520)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~ 416 (520)
|++||+.... .....+ .+...|++++|+|+ .+++++.|+.|++||+.+..... ...... ....
T Consensus 237 v~iwd~~~~~-----~~~~~~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~--------~~~~ 302 (343)
T 2xzm_R 237 LLIWDILNLT-----YPQREF-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEP--------ITKA 302 (343)
T ss_dssp EEEEESSCCS-----SCSEEE-ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCS--------GGGB
T ss_pred EEEEECCCCc-----ccceee-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCc--------chhh
Confidence 9999995442 222222 34567999999873 44556678889999998743221 000000 0001
Q ss_pred ccccCcceeeEEEEec--CCEEEEecCCCeEEEEeCCch
Q 009993 417 RMLHGFECNLLSVDIG--ADRIVCGGEEGIVRIWNFSQA 453 (520)
Q Consensus 417 ~~~~~~~~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~~~ 453 (520)
....+|...+.+++|+ +.+|++|+.||.|++|+++++
T Consensus 303 ~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 303 EGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp TTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 1123566667666655 559999999999999998765
No 19
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-39 Score=305.38 Aligned_cols=294 Identities=22% Similarity=0.296 Sum_probs=223.1
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC--cEEEEe-CC-CCceEEEEe--cCCCEEEEEeCCCcEEE
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG--FSIASS-KP-LGCTIRAVA--ADKKLLVAGGTDGFIHC 208 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~--~~~~~~-~~-~~~~v~~~~--~~~~~l~sg~~dg~i~v 208 (520)
+++|++|.+.|++++|+|+ +|++|+.|++|++||+.++ ..+..+ .+ |...|.++. |++++|++|+.|++|++
T Consensus 7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~i 84 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI 84 (330)
T ss_dssp EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 5678999999999999987 9999999999999999875 445555 44 888887765 89999999999999999
Q ss_pred EEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCC----cEEEEee-eccCEEE
Q 009993 209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALL----KCLKVLR-HSDWVYG 281 (520)
Q Consensus 209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~----~~~~~~~-~~~~v~~ 281 (520)
||+...... .........+.+|...|.+++| ++++|++|+.|++|++||++.. +++..+. |...|.+
T Consensus 85 w~~~~~~~~------~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~ 158 (330)
T 2hes_X 85 WAKEESADR------TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH 158 (330)
T ss_dssp EEC-------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEE
T ss_pred EEcccCcCc------cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEE
Confidence 998543110 0112345667899999999999 6789999999999999999432 4556665 8899999
Q ss_pred Ee--eCCCEEEEEc-CCeEEEEECCCC--eeeEEeecccccceEEEEecCC--CCEEEEEeCCCeEEEEEcccCcccc--
Q 009993 282 LA--PHDTTVASTS-GSDVYIWDTNSG--CLLTVVNGAHVGNTKSLARSHT--GDFLFTGGEDGAIHMYEIINDCTEA-- 352 (520)
Q Consensus 282 ~~--~~~~~l~~~~-d~~i~iwd~~~~--~~~~~~~~~~~~~i~~l~~s~~--~~~l~tg~~dg~i~iwd~~~~~~~~-- 352 (520)
+. |++.+|++++ |++|++||..++ +++..+. +|...|.+++|+|+ +.+|++|+.|++|++||++......
T Consensus 159 v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~ 237 (330)
T 2hes_X 159 VIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN-GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQ 237 (330)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc-CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccc
Confidence 87 8899999999 999999999876 5666665 79999999999998 6789999999999999997652211
Q ss_pred ceeeeeeecC-CcCCEEEEEecC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcce-eeEEE
Q 009993 353 NVLLVATWIP-HTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC-NLLSV 429 (520)
Q Consensus 353 ~~~~~~~~~~-h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~ 429 (520)
.......+.+ |...|++++|++ .+|++++.||.|++||..++.. ........+|.. .+.++
T Consensus 238 ~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~----------------~~~~~~~~~h~~~~v~~v 301 (330)
T 2hes_X 238 EWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEW----------------KVFAKRALCHGVYEINVV 301 (330)
T ss_dssp EEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEE----------------EEEEEESCTTTTSCEEEE
T ss_pred eeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCce----------------EEEeccccccccceEEEE
Confidence 1123444544 899999999975 6899999999999999865310 000111234554 56666
Q ss_pred Eec----CCEEEEecCCCeEEEEeCCch
Q 009993 430 DIG----ADRIVCGGEEGIVRIWNFSQA 453 (520)
Q Consensus 430 ~~~----~~~l~sg~~Dg~v~iwd~~~~ 453 (520)
.+. +.+|++|+.||+|+||++++.
T Consensus 302 ~~~~~~~~~~las~s~Dg~v~~W~~~~~ 329 (330)
T 2hes_X 302 KWLELNGKTILATGGDDGIVNFWSLEKA 329 (330)
T ss_dssp EEC-----CCEEEEETTSEEEEEEC---
T ss_pred EEecCCCceEEEEecCCCcEEEEEeccC
Confidence 654 458999999999999998753
No 20
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.7e-38 Score=305.04 Aligned_cols=291 Identities=21% Similarity=0.324 Sum_probs=231.8
Q ss_pred HhhhhhccccccEEEEEEccC-CCEEEEEeCCCeEEEEECCCCc-----EEEEeCCCCceEEEEe--cCCCEEEEEeCCC
Q 009993 133 ELIDVLYGHTEAVLTVFVLAS-AKLLFTSGYDSIVRMWHLEDGF-----SIASSKPLGCTIRAVA--ADKKLLVAGGTDG 204 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~~~-~~~l~sgs~dg~v~vwd~~~~~-----~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg 204 (520)
.+..+|+||++.|++|+|+|+ +++|+|||.|++|+|||+.+++ +...+.+|...|.++. +++++|++|+.|+
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 345679999999999999997 6899999999999999987653 5667889998888765 8999999999999
Q ss_pred cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee--eccCEE
Q 009993 205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVY 280 (520)
Q Consensus 205 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~ 280 (520)
.|++|+..... .......+...+..+.+ ++.++++|+.|+.+++||........... |...+.
T Consensus 109 ~i~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~ 175 (340)
T 4aow_A 109 TLRLWDLTTGT-------------TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVS 175 (340)
T ss_dssp EEEEEETTTTE-------------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEE
T ss_pred cceEEeecccc-------------eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCccc
Confidence 99999986652 34445567777888877 67889999999999999998765544332 778888
Q ss_pred EEe--e--CCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcccccee
Q 009993 281 GLA--P--HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVL 355 (520)
Q Consensus 281 ~~~--~--~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~ 355 (520)
.+. + ...++++++ |+.|++||+++++.+..+. +|.+.|++++|+|++++|++|+.||.|++||+++. .
T Consensus 176 ~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~------~ 248 (340)
T 4aow_A 176 CVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG------K 248 (340)
T ss_dssp EEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT------E
T ss_pred ceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEec-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC------c
Confidence 776 2 345677777 9999999999999998887 69999999999999999999999999999999988 5
Q ss_pred eeeeecCCcCCEEEEEecC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC-
Q 009993 356 LVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA- 433 (520)
Q Consensus 356 ~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 433 (520)
.+..+..+ ..|.++.|+| ..+++++.|+.|++||+++....... ..........+|...|.++.+++
T Consensus 249 ~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~----------~~~~~~~~~~~h~~~v~~l~~s~d 317 (340)
T 4aow_A 249 HLYTLDGG-DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDEL----------KQEVISTSSKAEPPQCTSLAWSAD 317 (340)
T ss_dssp EEEEEECS-SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEE----------CCC-------CCCCCEEEEEECTT
T ss_pred eeeeecCC-ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEec----------cccceeeeccCCCCCEEEEEECCC
Confidence 66666544 5899999987 57888889999999999874322111 01122233456777777777654
Q ss_pred -CEEEEecCCCeEEEEeCCchH
Q 009993 434 -DRIVCGGEEGIVRIWNFSQAF 454 (520)
Q Consensus 434 -~~l~sg~~Dg~v~iwd~~~~~ 454 (520)
++|++|+.||.|+|||+++|.
T Consensus 318 g~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 318 GQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp SSEEEEEETTSCEEEEEEEC--
T ss_pred CCEEEEEeCCCEEEEEeCCCcC
Confidence 599999999999999999875
No 21
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.8e-39 Score=316.94 Aligned_cols=265 Identities=23% Similarity=0.328 Sum_probs=232.8
Q ss_pred hhhhhcCCCCCCC-CCCCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC
Q 009993 107 FYCERWGLPIASA-PLGAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK 181 (520)
Q Consensus 107 ~~~~~~~~~~~~~-~~~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~ 181 (520)
+.|..|. |.... ..++.+...++|+ ++.+++++|.+.|++++|+|++++|++|+.|++|++||+.+++.+..+.
T Consensus 111 V~~~~~~-p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~ 189 (410)
T 1vyh_C 111 VTRVIFH-PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH 189 (410)
T ss_dssp EEEEEEC-SSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCC
T ss_pred EEEEEEc-CCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEc
Confidence 4555665 44332 2334456678998 5678899999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCC
Q 009993 182 PLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM 257 (520)
Q Consensus 182 ~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg 257 (520)
+|...|.++. |++++|++|+.|++|++||+.++. ....+.+|...|.++.+ ++.++++|+.|+
T Consensus 190 ~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~-------------~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~ 256 (410)
T 1vyh_C 190 GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-------------CVKTFTGHREWVRMVRPNQDGTLIASCSNDQ 256 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-------------EEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-------------EEEEEeCCCccEEEEEECCCCCEEEEEcCCC
Confidence 9998888776 899999999999999999998763 45677899999999999 778999999999
Q ss_pred eEEEEECCCCcEEEEee-eccCEEEEe--eC--------------------CCEEEEEc-CCeEEEEECCCCeeeEEeec
Q 009993 258 TVRVWDRALLKCLKVLR-HSDWVYGLA--PH--------------------DTTVASTS-GSDVYIWDTNSGCLLTVVNG 313 (520)
Q Consensus 258 ~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~--------------------~~~l~~~~-d~~i~iwd~~~~~~~~~~~~ 313 (520)
+|++||+.++++...+. |...|.++. |+ +.++++|+ |+.|++||++++.++..+.
T Consensus 257 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~- 335 (410)
T 1vyh_C 257 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV- 335 (410)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE-
T ss_pred eEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE-
Confidence 99999999999988886 888999887 43 56899988 9999999999999998887
Q ss_pred ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeC
Q 009993 314 AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDV 391 (520)
Q Consensus 314 ~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~ 391 (520)
+|...|++++|+|++.+|++|+.||.|++||+.++ .++..+.+|...|++++|+| .+|++|+.||+|++|++
T Consensus 336 ~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~------~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 336 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK------RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS------CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------ceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 69999999999999999999999999999999888 67888899999999999987 59999999999999996
Q ss_pred C
Q 009993 392 R 392 (520)
Q Consensus 392 ~ 392 (520)
+
T Consensus 410 r 410 (410)
T 1vyh_C 410 R 410 (410)
T ss_dssp -
T ss_pred C
Confidence 4
No 22
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.1e-37 Score=321.83 Aligned_cols=316 Identities=22% Similarity=0.343 Sum_probs=263.0
Q ss_pred CCCCCcccHH---HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEE
Q 009993 123 AGFSDDKSWK---ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLL 197 (520)
Q Consensus 123 ~~~~~~~~W~---~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l 197 (520)
+.+...++|+ +.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|.++. |++..+
T Consensus 240 ~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l 318 (577)
T 2ymu_A 240 SDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTI 318 (577)
T ss_dssp ETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred eCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEE
Confidence 3345568897 456778999999999999999999999999999999996 5677888899998887765 899999
Q ss_pred EEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-
Q 009993 198 VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR- 274 (520)
Q Consensus 198 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~- 274 (520)
++++.||.|++||.... ....+.+|...|.++++ ++.++++++.|++|++||. +++.+..+.
T Consensus 319 ~t~~~d~~i~~w~~~~~--------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~ 383 (577)
T 2ymu_A 319 ASASDDKTVKLWNRNGQ--------------HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG 383 (577)
T ss_dssp EEEETTSCEEEEETTSC--------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEEC
T ss_pred EEEeCCCeEEEEeCCCC--------------eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecC
Confidence 99999999999997543 34567789999999999 7789999999999999996 566677666
Q ss_pred eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccc
Q 009993 275 HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE 351 (520)
Q Consensus 275 ~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~ 351 (520)
|...|.++. ++++++++++ |+.|++||. +++.+..+. +|...|++++|+|++++|++++.|+.|++||...
T Consensus 384 ~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~---- 457 (577)
T 2ymu_A 384 HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG---- 457 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS----
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEec-CCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC----
Confidence 889999887 8899999998 999999995 566677776 6999999999999999999999999999999643
Q ss_pred cceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEE
Q 009993 352 ANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSV 429 (520)
Q Consensus 352 ~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 429 (520)
..+..+.+|...|++++|+| .+|++++.|+.|++||... .....+.+|...|.++
T Consensus 458 ---~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~--------------------~~~~~~~~h~~~v~~l 514 (577)
T 2ymu_A 458 ---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--------------------QLLQTLTGHSSSVRGV 514 (577)
T ss_dssp ---CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS--------------------CEEEEEECCSSCEEEE
T ss_pred ---CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC--------------------CEEEEEeCCCCCEEEE
Confidence 46778889999999999976 6999999999999999642 2334456787777777
Q ss_pred Eec--CCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccccc
Q 009993 430 DIG--ADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVA 494 (520)
Q Consensus 430 ~~~--~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~ 494 (520)
.++ +++|++++.||.|++||.. ++.+ .....+...+..++|+|||+.+++++.+
T Consensus 515 ~~s~dg~~l~s~~~dg~v~lwd~~-~~~~----------~~~~~h~~~v~~~~fs~dg~~l~s~~~D 570 (577)
T 2ymu_A 515 AFSPDGQTIASASDDKTVKLWNRN-GQLL----------QTLTGHSSSVWGVAFSPDGQTIASASSD 570 (577)
T ss_dssp EECTTSSCEEEEETTSEEEEECTT-SCEE----------EEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred EEcCCCCEEEEEECcCEEEEEeCC-CCEE----------EEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 765 4599999999999999964 3221 1122345567899999999999987753
No 23
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-37 Score=292.26 Aligned_cols=284 Identities=21% Similarity=0.332 Sum_probs=242.4
Q ss_pred HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009993 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR 210 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd 210 (520)
++.+++.+|.+.|++++| |++++|++|+.||.|++||+.++.....+..|...+.++. +++.++++|+.||.|++|+
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 87 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP 87 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 346788999999999999 9999999999999999999999998888888888887765 9999999999999999999
Q ss_pred cccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--e-CC
Q 009993 211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--P-HD 286 (520)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~-~~ 286 (520)
+.... .......+.+|...|.++.|+++++++++.||.|++|| .++....+. |...+.++. + ++
T Consensus 88 ~~~~~----------~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (313)
T 3odt_A 88 LFATS----------GEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSE 155 (313)
T ss_dssp TTCCT----------TSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTT
T ss_pred eeecC----------CCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCC
Confidence 86642 12345667899999999999999999999999999999 666666666 888898877 4 88
Q ss_pred CEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcC
Q 009993 287 TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG 365 (520)
Q Consensus 287 ~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 365 (520)
..+++++ |+.|++|| .++....+...|...+.+++|+|++. +++++.||.|++||++++ ..+..+.+|..
T Consensus 156 ~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~------~~~~~~~~~~~ 226 (313)
T 3odt_A 156 NKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG------DVLRTYEGHES 226 (313)
T ss_dssp TEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC------CEEEEEECCSS
T ss_pred CEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch------hhhhhhhcCCc
Confidence 9999988 99999999 55666666655899999999999988 999999999999999988 67888889999
Q ss_pred CEEEEEecCC-EEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC-EEEEecCCC
Q 009993 366 PVNSLAFEFP-WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEG 443 (520)
Q Consensus 366 ~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg 443 (520)
.|++++|+|+ .|++++.||.|++||++++ .....+..|...+.++.++++ .+++++.||
T Consensus 227 ~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~-------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg 287 (313)
T 3odt_A 227 FVYCIKLLPNGDIVSCGEDRTVRIWSKENG-------------------SLKQVITLPAISIWSVDCMSNGDIIVGSSDN 287 (313)
T ss_dssp CEEEEEECTTSCEEEEETTSEEEEECTTTC-------------------CEEEEEECSSSCEEEEEECTTSCEEEEETTS
T ss_pred eEEEEEEecCCCEEEEecCCEEEEEECCCC-------------------ceeEEEeccCceEEEEEEccCCCEEEEeCCC
Confidence 9999999874 8999999999999999873 233445566667777777655 577899999
Q ss_pred eEEEEeCCchHhHH
Q 009993 444 IVRIWNFSQAFEIE 457 (520)
Q Consensus 444 ~v~iwd~~~~~~~~ 457 (520)
.|++||+.++....
T Consensus 288 ~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 288 LVRIFSQEKSRWAS 301 (313)
T ss_dssp CEEEEESCGGGCCC
T ss_pred cEEEEeCCCCceee
Confidence 99999999875543
No 24
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.5e-38 Score=301.64 Aligned_cols=265 Identities=16% Similarity=0.165 Sum_probs=217.2
Q ss_pred hhhhhcCCCCCCCCCCCCCCCcccHHHh---------------hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEEC
Q 009993 107 FYCERWGLPIASAPLGAGFSDDKSWKEL---------------IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHL 171 (520)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~W~~~---------------~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~ 171 (520)
+.+..|+ |+..+++..++...++|+.. ......|...|.+++|+|++ .|++|+.||+|+|||+
T Consensus 33 v~~~~fs-~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~ 110 (344)
T 4gqb_B 33 LEAARYR-SDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWEL 110 (344)
T ss_dssp EEEEEEC-TTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEE
T ss_pred EEEEEEC-CCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEec
Confidence 4567787 66666655556666788621 11223456789999999985 6889999999999999
Q ss_pred CCCcEEEE----eCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE
Q 009993 172 EDGFSIAS----SKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL 245 (520)
Q Consensus 172 ~~~~~~~~----~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 245 (520)
.+++.+.. ..+|...|.++. +++++|++|+.||+|++||+.++. ....+.+|.+.|.+++|
T Consensus 111 ~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~-------------~~~~~~~h~~~V~~~~~ 177 (344)
T 4gqb_B 111 DENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV-------------VLSSYRAHAAQVTCVAA 177 (344)
T ss_dssp CTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-------------EEEEECCCSSCEEEEEE
T ss_pred cCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-------------EEEEEcCcCCceEEEEe
Confidence 99876543 348988888765 899999999999999999998763 56778899999999999
Q ss_pred --cC-CEEEEEecCCeEEEEECCCCcEEEEee---eccCEEEEe--e-CCCEEEEEc-CCeEEEEECCCCeeeEEeeccc
Q 009993 246 --DL-TRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLA--P-HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAH 315 (520)
Q Consensus 246 --~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~--~-~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~ 315 (520)
++ ..+++|+.|++|++||+++++....+. +...+.++. + +++++++|+ |+.|++||+++++++..+. +|
T Consensus 178 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~-~h 256 (344)
T 4gqb_B 178 SPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA-VH 256 (344)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE-CC
T ss_pred cCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc-CC
Confidence 33 578999999999999999999888875 556677777 4 567888888 9999999999999999887 69
Q ss_pred ccceEEEEecCCC-CEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeC
Q 009993 316 VGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDV 391 (520)
Q Consensus 316 ~~~i~~l~~s~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~ 391 (520)
...|++++|+|++ .+|++|+.|++|+|||++++ . +..+.+|.+.|++++|+| .+|++|+.||+|++|++
T Consensus 257 ~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~------~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 257 SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS------E-LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC------E-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC------c-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 9999999999998 57999999999999999887 3 345789999999999976 36889999999999999
Q ss_pred Ccc
Q 009993 392 RKL 394 (520)
Q Consensus 392 ~~~ 394 (520)
.+.
T Consensus 330 ~~~ 332 (344)
T 4gqb_B 330 PTE 332 (344)
T ss_dssp CC-
T ss_pred CCC
Confidence 863
No 25
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.9e-37 Score=295.00 Aligned_cols=250 Identities=22% Similarity=0.282 Sum_probs=224.7
Q ss_pred CCCCCcccHH------HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceE--EEEecCC
Q 009993 123 AGFSDDKSWK------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTI--RAVAADK 194 (520)
Q Consensus 123 ~~~~~~~~W~------~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v--~~~~~~~ 194 (520)
+.+...++|+ .+...+.||...|.+++|++++.++++|+.|++|++||+.+++.+..+..|...+ .+++|++
T Consensus 55 s~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg 134 (321)
T 3ow8_A 55 SLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 134 (321)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTS
T ss_pred cCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCC
Confidence 4455668997 2345689999999999999999999999999999999999999999888776655 4566999
Q ss_pred CEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEE
Q 009993 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKV 272 (520)
Q Consensus 195 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~ 272 (520)
++|++|+.||.|++|++.++. ....+..|...|.+++| ++++|++|+.||.|++||+++++.+..
T Consensus 135 ~~l~~g~~dg~v~i~~~~~~~-------------~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~ 201 (321)
T 3ow8_A 135 QYLATGTHVGKVNIFGVESGK-------------KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT 201 (321)
T ss_dssp SEEEEECTTSEEEEEETTTCS-------------EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CEEEEEcCCCcEEEEEcCCCc-------------eeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence 999999999999999997763 44567788899999999 778999999999999999999999988
Q ss_pred ee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993 273 LR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND 348 (520)
Q Consensus 273 ~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~ 348 (520)
+. |...|.++. |++++|++++ |+.|++||+++++....+. +|...|.+++|+|++.+|++|+.|++|++||++++
T Consensus 202 ~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~ 280 (321)
T 3ow8_A 202 LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR 280 (321)
T ss_dssp ECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred EcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc-CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence 87 888888877 8899999999 9999999999999888886 69999999999999999999999999999999998
Q ss_pred ccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCC
Q 009993 349 CTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR 392 (520)
Q Consensus 349 ~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~ 392 (520)
.++.++.+|...|++++|+| .+|++++.||.|++||..
T Consensus 281 ------~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 281 ------TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ------EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred ------EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 78889999999999999976 699999999999999963
No 26
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6.9e-37 Score=305.42 Aligned_cols=291 Identities=21% Similarity=0.397 Sum_probs=253.4
Q ss_pred CCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEE
Q 009993 125 FSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAG 200 (520)
Q Consensus 125 ~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg 200 (520)
+...++|+ +.+..+.+|.+.|++++|+ ++++++|+.||+|++||+.+++.+..+.+|...|.++..+++.+++|
T Consensus 138 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~ 215 (445)
T 2ovr_B 138 DNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSG 215 (445)
T ss_dssp TSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEE
T ss_pred CCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEE
Confidence 45568888 5577889999999999997 67999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee-eccCE
Q 009993 201 GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWV 279 (520)
Q Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v 279 (520)
+.||.|++||+.++. ....+.+|...|.++.++++++++|+.||.|++||+++++.+..+. |...|
T Consensus 216 s~dg~i~~wd~~~~~-------------~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 282 (445)
T 2ovr_B 216 SRDATLRVWDIETGQ-------------CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 282 (445)
T ss_dssp ETTSEEEEEESSSCC-------------EEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCE
T ss_pred eCCCEEEEEECCCCc-------------EEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCce
Confidence 999999999997753 4566778999999999999999999999999999999999998887 88999
Q ss_pred EEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeee
Q 009993 280 YGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA 358 (520)
Q Consensus 280 ~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~ 358 (520)
.++..++..+++++ |+.|++||+++++.+..+. +|...+.++.+ +++++++|+.||.|++||++++ ..+.
T Consensus 283 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~------~~~~ 353 (445)
T 2ovr_B 283 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT-GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTG------QCLQ 353 (445)
T ss_dssp EEEEECSSEEEEEETTSCEEEEETTTCCEEEEEC-CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTC------CEEE
T ss_pred EEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEc-CCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCC------cEEE
Confidence 99999999999999 9999999999999998887 68889998887 4679999999999999999888 5666
Q ss_pred eecC---CcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC-
Q 009993 359 TWIP---HTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD- 434 (520)
Q Consensus 359 ~~~~---h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 434 (520)
.+.+ |...|++++|++++|++|+.||.|++||+.++.... .+.. ....+|...+.++.++++
T Consensus 354 ~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~---------~~~~-----~~~~~~~~~v~~~~~s~~~ 419 (445)
T 2ovr_B 354 TLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR---------NLVT-----LESGGSGGVVWRIRASNTK 419 (445)
T ss_dssp EECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE---------EEEE-----CTTGGGTCEEEEEEECSSE
T ss_pred EEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceee---------eeec-----cccCCCCceEEEEEecCCE
Confidence 6665 889999999999999999999999999998742211 1100 011456677888877766
Q ss_pred -EEEEecCCCe----EEEEeCCch
Q 009993 435 -RIVCGGEEGI----VRIWNFSQA 453 (520)
Q Consensus 435 -~l~sg~~Dg~----v~iwd~~~~ 453 (520)
++++|+.||+ |.+||++..
T Consensus 420 ~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 420 LVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEEEcccCCCCccEEEEEECCCC
Confidence 8999999998 999999864
No 27
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-37 Score=304.41 Aligned_cols=321 Identities=14% Similarity=0.167 Sum_probs=246.7
Q ss_pred HHhhhhhccc--cccEEEEEEccCCC-EEEEEeCCCeEEEEEC----CCCc------EEEEeCC----------CCceEE
Q 009993 132 KELIDVLYGH--TEAVLTVFVLASAK-LLFTSGYDSIVRMWHL----EDGF------SIASSKP----------LGCTIR 188 (520)
Q Consensus 132 ~~~~~~l~~h--~~~V~~l~~~~~~~-~l~sgs~dg~v~vwd~----~~~~------~~~~~~~----------~~~~v~ 188 (520)
+...+.+..| .+.|++++|+|+++ +|++|+.||.|++|++ .+++ ....+.. |...|.
T Consensus 33 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (425)
T 1r5m_A 33 DGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVT 112 (425)
T ss_dssp -CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEE
T ss_pred hhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceE
Confidence 3445556554 59999999999999 9999999999999999 8887 4444433 566776
Q ss_pred EEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEEC
Q 009993 189 AVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDR 264 (520)
Q Consensus 189 ~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~ 264 (520)
++. +++++|++|+.||.|++||. ++ .....+.+|...|.+++| ++++|++++.|+.|++||+
T Consensus 113 ~~~~s~~~~~l~~~~~dg~i~i~~~-~~-------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 178 (425)
T 1r5m_A 113 CLAWSHDGNSIVTGVENGELRLWNK-TG-------------ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNV 178 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEET-TS-------------CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEeC-CC-------------CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEEC
Confidence 665 89999999999999999993 32 255667789999999999 6789999999999999999
Q ss_pred CCCcEEEEee-eccC---------------EEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEec
Q 009993 265 ALLKCLKVLR-HSDW---------------VYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARS 325 (520)
Q Consensus 265 ~~~~~~~~~~-~~~~---------------v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s 325 (520)
.+++.+..+. +... +.++. +++. +++++ ++.|++||+++++.+..+. +|...|.+++|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~ 256 (425)
T 1r5m_A 179 ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQITEKTPTGKLI-GHHGPISVLEFN 256 (425)
T ss_dssp TTTEEEEEECCC---------------CCCBSCCEEEETTE-EEEECGGGCEEEEETTCSSCSEEEC-CCSSCEEEEEEE
T ss_pred CCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEcCCCceeeeec-cCCCceEEEEEC
Confidence 9999888876 3333 55544 5544 55555 9999999999999888886 699999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCC-EEEEEeCCCcEEEEeCCcccccCCCCCCC
Q 009993 326 HTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP-WLVSAAGDGKLSLIDVRKLLRSGRPTSGK 404 (520)
Q Consensus 326 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 404 (520)
|++++|++++.||.|++||++++ ..+..+.+|...|.++.|+|+ ++++++.||.|++||+++..
T Consensus 257 ~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--------- 321 (425)
T 1r5m_A 257 DTNKLLLSASDDGTLRIWHGGNG------NSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNT--------- 321 (425)
T ss_dssp TTTTEEEEEETTSCEEEECSSSB------SCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTE---------
T ss_pred CCCCEEEEEcCCCEEEEEECCCC------ccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCc---------
Confidence 99999999999999999999988 677788889999999999874 99999999999999998742
Q ss_pred ceeeeeecCCCcccccCcceeeEEEEec--CCEEEEecCCCeEEEEeCCchHhHHHHhhhhc----------ccccchhh
Q 009993 405 RVSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVCGGEEGIVRIWNFSQAFEIERRARALR----------GIRLENRM 472 (520)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~----------~~~~~~~~ 472 (520)
....+..|...+.++.++ +.+|++++.||.|++||+.++........... ........
T Consensus 322 ----------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (425)
T 1r5m_A 322 ----------LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSS 391 (425)
T ss_dssp ----------EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCT
T ss_pred ----------EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCc
Confidence 223344555666666655 56999999999999999987762211111000 11112222
Q ss_pred hh--ccceeeeccCCCccccccc
Q 009993 473 RR--RKLQTEMSSKGGRTDQCSV 493 (520)
Q Consensus 473 ~~--~~~~~~~s~~g~~~~~~s~ 493 (520)
.. .+..++|+|+|+.+++++.
T Consensus 392 ~~~~~v~~~~~s~~~~~l~~~~~ 414 (425)
T 1r5m_A 392 QDNDYIFDLSWNCAGNKISVAYS 414 (425)
T ss_dssp TCCCCEEEEEECTTSSEEEEEES
T ss_pred ccCCceEEEEccCCCceEEEEec
Confidence 22 6789999999999988774
No 28
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.2e-36 Score=314.13 Aligned_cols=315 Identities=22% Similarity=0.345 Sum_probs=259.8
Q ss_pred CCCcccHH---HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEE
Q 009993 125 FSDDKSWK---ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVA 199 (520)
Q Consensus 125 ~~~~~~W~---~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s 199 (520)
+...++|+ +.+..+.+|.+.|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|.++. |++..+++
T Consensus 201 d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~ 279 (577)
T 2ymu_A 201 DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIAS 279 (577)
T ss_dssp TSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEE
Confidence 44557887 456778999999999999999999999999999999995 5778888999999888765 89999999
Q ss_pred EeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeecc
Q 009993 200 GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSD 277 (520)
Q Consensus 200 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 277 (520)
++.|+.|++||.... ....+.+|...|.++++ ++..+++++.|++|++||...........|..
T Consensus 280 ~~~d~~i~~w~~~~~--------------~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~ 345 (577)
T 2ymu_A 280 ASDDKTVKLWNRNGQ--------------LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSS 345 (577)
T ss_dssp EETTSCEEEEETTSC--------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSS
T ss_pred EeCCCEEEEEeCCCc--------------EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCC
Confidence 999999999996432 45567899999999999 67899999999999999987655444444888
Q ss_pred CEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccce
Q 009993 278 WVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANV 354 (520)
Q Consensus 278 ~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~ 354 (520)
.|.++. |+++++++++ |+.|++||. +++.+..+. +|...|.+++|+|++++|++++.|+.|++||.. +
T Consensus 346 ~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~-~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~------ 416 (577)
T 2ymu_A 346 SVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G------ 416 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-C------
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEec-CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-C------
Confidence 998877 8899999998 899999995 566677776 699999999999999999999999999999953 3
Q ss_pred eeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEec
Q 009993 355 LLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG 432 (520)
Q Consensus 355 ~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 432 (520)
..+..+.+|...|++++|+| .+|++++.|+.|++||... .....+.+|...+.++.++
T Consensus 417 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~--------------------~~~~~~~~~~~~v~~~~~s 476 (577)
T 2ymu_A 417 QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG--------------------QLLQTLTGHSSSVRGVAFS 476 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS--------------------CEEEEEECCSSCEEEEEEC
T ss_pred CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC--------------------CEEEEEcCCCCCEEEEEEc
Confidence 46778889999999999976 6999999999999999643 2233456677777766665
Q ss_pred --CCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccccc
Q 009993 433 --ADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVA 494 (520)
Q Consensus 433 --~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~ 494 (520)
+.+|++++.|+.|++||.. +..+. ....+...+..++|+|||+.+++++.+
T Consensus 477 pd~~~las~~~d~~i~iw~~~-~~~~~----------~~~~h~~~v~~l~~s~dg~~l~s~~~d 529 (577)
T 2ymu_A 477 PDGQTIASASDDKTVKLWNRN-GQLLQ----------TLTGHSSSVRGVAFSPDGQTIASASDD 529 (577)
T ss_dssp TTSCEEEEEETTSEEEEEETT-SCEEE----------EEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred CCCCEEEEEeCCCEEEEEcCC-CCEEE----------EEeCCCCCEEEEEEcCCCCEEEEEECc
Confidence 5599999999999999964 32211 112234557899999999999987753
No 29
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.1e-36 Score=293.03 Aligned_cols=301 Identities=14% Similarity=0.115 Sum_probs=238.8
Q ss_pred hhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc--EEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009993 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV 212 (520)
Q Consensus 137 ~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~ 212 (520)
.+..|.++|++++|+|++++|++|+.|+.|++||+.+++ .+..+.+|...|.++. +++++|++++.||.|++||+.
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 356799999999999999999999999999999999987 8888999998887765 899999999999999999997
Q ss_pred cCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcE---EEEee--eccCEEEEe--
Q 009993 213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKC---LKVLR--HSDWVYGLA-- 283 (520)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~---~~~~~--~~~~v~~~~-- 283 (520)
++. ......+..|...|.+++| +++++++++.|+.|++||++.+.. ...+. |...|.++.
T Consensus 83 ~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 151 (372)
T 1k8k_C 83 GRT-----------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH 151 (372)
T ss_dssp TTE-----------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC
T ss_pred CCe-----------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEc
Confidence 653 1233445679999999999 678999999999999999988763 33332 788899888
Q ss_pred eCCCEEEEEc-CCeEEEEEC------------------CCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEE
Q 009993 284 PHDTTVASTS-GSDVYIWDT------------------NSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE 344 (520)
Q Consensus 284 ~~~~~l~~~~-d~~i~iwd~------------------~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd 344 (520)
++++++++++ |+.|++||+ ..++.+..+. +|...|.+++|+|++.+|++++.||.|++||
T Consensus 152 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d 230 (372)
T 1k8k_C 152 PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAWVSHDSTVCLAD 230 (372)
T ss_dssp TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 7889999998 999999995 4677777776 6999999999999999999999999999999
Q ss_pred cccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc--cc--ccCCCCCCCce--------eee-
Q 009993 345 IINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK--LL--RSGRPTSGKRV--------SRV- 409 (520)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~--~~--~~~~~~~~~~~--------~~~- 409 (520)
++++ ..+..+..|..+|++++|+| .+|++| .|+.|++|++.+ +. ........... ..+
T Consensus 231 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (372)
T 1k8k_C 231 ADKK------MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQ 303 (372)
T ss_dssp GGGT------TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHH
T ss_pred CCCC------ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhh
Confidence 9988 67888889999999999975 355555 999999999987 31 11000000000 000
Q ss_pred --eecCCC-------cccccCcceeeEEEEe---cC---CEEEEecCCCeEEEEeCCchHhH
Q 009993 410 --IEVEPP-------QRMLHGFECNLLSVDI---GA---DRIVCGGEEGIVRIWNFSQAFEI 456 (520)
Q Consensus 410 --~~~~~~-------~~~~~~~~~~v~~~~~---~~---~~l~sg~~Dg~v~iwd~~~~~~~ 456 (520)
...... .....+|...|.++.+ ++ .+|+||+.||.|++|++.++..+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 304 NLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp HCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred hcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence 000000 2223488888888863 34 79999999999999999876543
No 30
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.9e-36 Score=297.35 Aligned_cols=299 Identities=17% Similarity=0.120 Sum_probs=235.7
Q ss_pred hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc------EEEEeCCCCceEEEEe--cC----C---CEEE
Q 009993 134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF------SIASSKPLGCTIRAVA--AD----K---KLLV 198 (520)
Q Consensus 134 ~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~------~~~~~~~~~~~v~~~~--~~----~---~~l~ 198 (520)
+.+.+++|.+.|++++|+| ++|++|+.||.|++||+.+++ .+..+.+|...|.++. ++ + .+|+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence 3567889999999999998 799999999999999999988 7888889998888765 77 8 9999
Q ss_pred EEeCCCcEEEEEcccCcceeeeccCCccccceEEeccC-----CCCeEEEEEc------CCE-EEEEecCCeEEEEECCC
Q 009993 199 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH-----EGPITSLALD------LTR-IYSGSWDMTVRVWDRAL 266 (520)
Q Consensus 199 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~------~~~-l~s~s~dg~v~iwd~~~ 266 (520)
+++.||.|++||+.++.. ........+..| ...|.+++|. +++ |++++.||.|++||+++
T Consensus 86 s~~~dg~i~iw~~~~~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDE--------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp EEETTSCEEEEEEEECTT--------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred EEcCCCCEEEEEccCCcc--------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 999999999999987631 001115567778 5999999997 578 99999999999999988
Q ss_pred ------CcEEE-----Eee--------eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecc---c---ccc
Q 009993 267 ------LKCLK-----VLR--------HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGA---H---VGN 318 (520)
Q Consensus 267 ------~~~~~-----~~~--------~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~---~---~~~ 318 (520)
++.+. .+. |...|.++. +++ ++++++ |+.|++||+++++.+..+. . | ...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~h~~~~~~ 235 (397)
T 1sq9_A 158 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFE-SQHSMINNSNS 235 (397)
T ss_dssp SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEE-CCC---CCCCC
T ss_pred cccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEe-ccccccccCCc
Confidence 65554 442 577788877 777 888888 8999999999999988886 5 7 899
Q ss_pred eEEEEecCCCCEEEEEeCC---CeEEEEEcccCccccceeeeeeecC-------------CcCCEEEEEecC--CEEEEE
Q 009993 319 TKSLARSHTGDFLFTGGED---GAIHMYEIINDCTEANVLLVATWIP-------------HTGPVNSLAFEF--PWLVSA 380 (520)
Q Consensus 319 i~~l~~s~~~~~l~tg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~-------------h~~~v~~l~~~~--~~l~s~ 380 (520)
|.+++|+|++.+|++++.| |.|++||++++ ..+..+.+ |...|++++|+| ++|+++
T Consensus 236 i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 309 (397)
T 1sq9_A 236 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA 309 (397)
T ss_dssp EEEEEECSSTTEEEEEEEETTEEEEEEEETTTC------CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred cceEEECCCCCEEEEEecCCCCceEEEEECCCC------cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEE
Confidence 9999999999999999999 99999999988 66777777 999999999975 699999
Q ss_pred eCCCcEEEEeCCcccccCCCCCCCceeeeeec-----CCCcccccCcceeeEEEEecC------------CEEEEecCCC
Q 009993 381 AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEV-----EPPQRMLHGFECNLLSVDIGA------------DRIVCGGEEG 443 (520)
Q Consensus 381 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~------------~~l~sg~~Dg 443 (520)
+.||.|++||+++.............. .. .........|...|.++.+++ .+|++|+.||
T Consensus 310 ~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg 386 (397)
T 1sq9_A 310 GWDGKLRFWDVKTKERITTLNMHCDDI---EIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR 386 (397)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCGGGC---SSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT
T ss_pred eCCCeEEEEEcCCCceeEEEecccCcc---cchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCC
Confidence 999999999998753221111000000 00 000001112366666666544 4899999999
Q ss_pred eEEEEeCCch
Q 009993 444 IVRIWNFSQA 453 (520)
Q Consensus 444 ~v~iwd~~~~ 453 (520)
.|++|++.++
T Consensus 387 ~i~iw~~~~g 396 (397)
T 1sq9_A 387 SIRWFREAGG 396 (397)
T ss_dssp EEEEEEEEC-
T ss_pred cEEEEEcCCC
Confidence 9999999876
No 31
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.9e-36 Score=315.99 Aligned_cols=295 Identities=18% Similarity=0.322 Sum_probs=224.7
Q ss_pred hhhccccccEEEEEEccCC-CEEEEEeCCCeEEEEECCCC-----cEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEE
Q 009993 136 DVLYGHTEAVLTVFVLASA-KLLFTSGYDSIVRMWHLEDG-----FSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIH 207 (520)
Q Consensus 136 ~~l~~h~~~V~~l~~~~~~-~~l~sgs~dg~v~vwd~~~~-----~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~ 207 (520)
..+++|++.|++++|+|++ ++|+||+.|++|++|++.+. .....+.+|...|.++. +++++|++|+.||+|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 4588999999999999864 79999999999999999763 34567889998887765 8999999999999999
Q ss_pred EEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEe----eeccCEEE
Q 009993 208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL----RHSDWVYG 281 (520)
Q Consensus 208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~----~~~~~v~~ 281 (520)
+||+.++. ....+.+|...|.+++| ++++|++|+.|++|++||.......... .|...|.+
T Consensus 456 vwd~~~~~-------------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 522 (694)
T 3dm0_A 456 LWDLAAGV-------------STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSC 522 (694)
T ss_dssp EEETTTTE-------------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEE
T ss_pred EEECCCCc-------------ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEE
Confidence 99997753 45677899999999999 6789999999999999998765443332 27788998
Q ss_pred Ee--eCC--CEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceee
Q 009993 282 LA--PHD--TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL 356 (520)
Q Consensus 282 ~~--~~~--~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~ 356 (520)
+. +++ ..+++++ |+.|++||+++++....+. +|.+.|++++|+|++++|++|+.||.|++||++++ ..
T Consensus 523 ~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~------~~ 595 (694)
T 3dm0_A 523 VRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA-GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG------KK 595 (694)
T ss_dssp EEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT------EE
T ss_pred EEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC------ce
Confidence 88 444 5788888 9999999999999888886 69999999999999999999999999999999988 55
Q ss_pred eeeecCCcCCEEEEEecC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeE--EEEecC
Q 009993 357 VATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLL--SVDIGA 433 (520)
Q Consensus 357 ~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~ 433 (520)
+..+.. ...|.+++|+| ..+++++.|+.|++||+++............................+...+. ++++++
T Consensus 596 ~~~~~~-~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg 674 (694)
T 3dm0_A 596 LYSLEA-NSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG 674 (694)
T ss_dssp EECCBC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTS
T ss_pred EEEecC-CCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCC
Confidence 555544 46899999987 34555556777999999876433211110000000000000000111222344 455566
Q ss_pred CEEEEecCCCeEEEEeCC
Q 009993 434 DRIVCGGEEGIVRIWNFS 451 (520)
Q Consensus 434 ~~l~sg~~Dg~v~iwd~~ 451 (520)
.+|++|+.||+|+||++.
T Consensus 675 ~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 675 STLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp SEEEEEETTSEEEEEEC-
T ss_pred CEEEEEcCCCeEEEEecc
Confidence 799999999999999986
No 32
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.7e-36 Score=291.69 Aligned_cols=306 Identities=15% Similarity=0.186 Sum_probs=232.7
Q ss_pred hhhhccccccEEEEEEccCCCEE-EEEeC---CCeEEEEECCCCcEEEEe-CCCCceEEEEe--cC---CCEEEEEeCCC
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLL-FTSGY---DSIVRMWHLEDGFSIASS-KPLGCTIRAVA--AD---KKLLVAGGTDG 204 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l-~sgs~---dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~--~~---~~~l~sg~~dg 204 (520)
.+.+++|.+.|++++|+|++..+ ++|+. |+.|++||+.+++..... .+|...|.++. ++ +.+|++|+.||
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 34567899999999999998655 56665 999999999998765443 36777888776 66 69999999999
Q ss_pred cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--------cCCEEEEEecCCeEEEEECCCCc-EEEEee-
Q 009993 205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--------DLTRIYSGSWDMTVRVWDRALLK-CLKVLR- 274 (520)
Q Consensus 205 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--------~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~- 274 (520)
.|++||+.++. .....+.+|...|.++.| ++++|++++.||+|++||+++++ .+..+.
T Consensus 91 ~i~iwd~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~ 158 (357)
T 3i2n_A 91 NLHIWNLEAPE------------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEP 158 (357)
T ss_dssp CEEEECTTSCS------------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECC
T ss_pred eEEEEeCCCCC------------ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccc
Confidence 99999997752 245667899999999965 46799999999999999999886 666664
Q ss_pred e----ccCEEEEe------eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecC---CCCEEEEEeCCCeE
Q 009993 275 H----SDWVYGLA------PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH---TGDFLFTGGEDGAI 340 (520)
Q Consensus 275 ~----~~~v~~~~------~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~---~~~~l~tg~~dg~i 340 (520)
+ ...+.++. +++.++++++ |+.|++||+++++..... .|...|.+++|+| ++.++++|+.||.|
T Consensus 159 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 236 (357)
T 3i2n_A 159 VQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET--NIKNGVCSLEFDRKDISMNKLVATSLEGKF 236 (357)
T ss_dssp CTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEESCSSSSCCEEEEEESTTEE
T ss_pred cCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec--CCCCceEEEEcCCCCCCCCEEEEECCCCeE
Confidence 2 33787776 7899999999 899999999999886554 4889999999999 99999999999999
Q ss_pred EEEEcccCccccceeeeeeecCCcCCEEEEEecCC---EEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcc
Q 009993 341 HMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP---WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQR 417 (520)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (520)
++||++++...... ....+.+|...|++++|+|. +|++|+.||.|++||+++........................
T Consensus 237 ~i~d~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (357)
T 3i2n_A 237 HVFDMRTQHPTKGF-ASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQ 315 (357)
T ss_dssp EEEEEEEEETTTEE-EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEE
T ss_pred EEEeCcCCCcccce-eeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceee
Confidence 99999987432211 11234589999999999873 799999999999999987543321111110000000012234
Q ss_pred cccCcceeeEEEEecCC--EEE-EecCCCeEEEEeCCchHh
Q 009993 418 MLHGFECNLLSVDIGAD--RIV-CGGEEGIVRIWNFSQAFE 455 (520)
Q Consensus 418 ~~~~~~~~v~~~~~~~~--~l~-sg~~Dg~v~iwd~~~~~~ 455 (520)
.+.+|...|.++.++++ +|+ +|+.||.|++||+.+...
T Consensus 316 ~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 316 NVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred ccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 45677778887777654 676 899999999999987543
No 33
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.6e-36 Score=289.85 Aligned_cols=265 Identities=17% Similarity=0.237 Sum_probs=226.2
Q ss_pred hhhhhhcCCCCCCCC-CCCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC----cE
Q 009993 106 EFYCERWGLPIASAP-LGAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG----FS 176 (520)
Q Consensus 106 ~~~~~~~~~~~~~~~-~~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~----~~ 176 (520)
.+++..|. |+.... ..+.+...++|+ ..+..+..|...|.+++|+|++++|++|+.|+.|++|++.++ ..
T Consensus 57 ~v~~~~~s-~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~ 135 (340)
T 1got_B 57 KIYAMHWG-TDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRV 135 (340)
T ss_dssp CEEEEEEC-TTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEE
T ss_pred ceEEEEEC-CCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCccee
Confidence 45677776 444433 334455668998 446678899999999999999999999999999999999876 34
Q ss_pred EEEeCCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEE
Q 009993 177 IASSKPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSG 253 (520)
Q Consensus 177 ~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~ 253 (520)
...+.+|...+.++. .++..+++++.|++|++||+.++. ....+.+|.+.|.+++| ++.++++|
T Consensus 136 ~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 136 SRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQ-------------QTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp EEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTE-------------EEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCc-------------EEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 566788998888776 334469999999999999997763 45677899999999999 67899999
Q ss_pred ecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeec-ccccceEEEEecCCC
Q 009993 254 SWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG-AHVGNTKSLARSHTG 328 (520)
Q Consensus 254 s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~-~~~~~i~~l~~s~~~ 328 (520)
+.|++|++||++++.+...+. |...|.++. |+++++++++ |+.|++||+++++.+..+.. .+...|.+++|+|++
T Consensus 203 ~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g 282 (340)
T 1got_B 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282 (340)
T ss_dssp ETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS
T ss_pred eCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCC
Confidence 999999999999999998887 889999887 8899999999 99999999999988777642 233579999999999
Q ss_pred CEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEe
Q 009993 329 DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLID 390 (520)
Q Consensus 329 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd 390 (520)
.+|++|+.||.|++||+.+. ..+..+.+|.++|++++|+| .+|++|+.||.|+|||
T Consensus 283 ~~l~~g~~d~~i~vwd~~~~------~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 283 RLLLAGYDDFNCNVWDALKA------DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEECCCCeEEEEEcccC------cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999888 67788899999999999976 5999999999999997
No 34
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-35 Score=284.82 Aligned_cols=280 Identities=14% Similarity=0.176 Sum_probs=236.4
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV 212 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~ 212 (520)
...|.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.++. +++++|++++.||.|++||+.
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 104 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS 104 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 456899999999999999999999999999999999999999999999999888776 889999999999999999997
Q ss_pred cCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecC-----CeEEEEECCCCcEE-----------EEee
Q 009993 213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD-----MTVRVWDRALLKCL-----------KVLR 274 (520)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d-----g~v~iwd~~~~~~~-----------~~~~ 274 (520)
++. ....+. |...|.+++| ++.++++++.+ +.|++||+.+.... ..+.
T Consensus 105 ~~~-------------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 170 (369)
T 3zwl_B 105 NGQ-------------CVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII 170 (369)
T ss_dssp TCC-------------EEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE
T ss_pred CCc-------------EEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc
Confidence 763 233333 8889999999 77899999998 99999998765422 2222
Q ss_pred -ecc--CEEEEe--eCCCEEEEEc-CCeEEEEECCC-CeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEccc
Q 009993 275 -HSD--WVYGLA--PHDTTVASTS-GSDVYIWDTNS-GCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIN 347 (520)
Q Consensus 275 -~~~--~v~~~~--~~~~~l~~~~-d~~i~iwd~~~-~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~ 347 (520)
+.. .+.++. ++++++++++ |+.|++||+++ +..+..+. .|...|.+++|+|++.+|++++.||.|++||+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 249 (369)
T 3zwl_B 171 THEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID-LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST 249 (369)
T ss_dssp CCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe-cCCCceeEEEECCCCCEEEEecCCceEEEEECCC
Confidence 333 777776 8889999988 89999999999 67777776 6999999999999999999999999999999998
Q ss_pred CccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCC--------------cEEEEeCCcccccCCCCCCCceeeeee
Q 009993 348 DCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDG--------------KLSLIDVRKLLRSGRPTSGKRVSRVIE 411 (520)
Q Consensus 348 ~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg--------------~i~vwd~~~~~~~~~~~~~~~~~~~~~ 411 (520)
+ ..+..+. +...+.++.|+| .++++++.++ .+++||+.+.
T Consensus 250 ~------~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~----------------- 305 (369)
T 3zwl_B 250 L------QVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE----------------- 305 (369)
T ss_dssp C------CEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC-----------------
T ss_pred C------ceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC-----------------
Confidence 8 4555554 778999999976 7999999888 8999998773
Q ss_pred cCCCcccccCcceeeEEEEec--CCEEEEecCCCeEEEEeCCchHh
Q 009993 412 VEPPQRMLHGFECNLLSVDIG--ADRIVCGGEEGIVRIWNFSQAFE 455 (520)
Q Consensus 412 ~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~~~~~ 455 (520)
.....+.+|...|.++.++ +.+|++|+.||.|++|+++++..
T Consensus 306 --~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 306 --EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp --CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred --cchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence 3344456777778777775 45999999999999999998654
No 35
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.2e-36 Score=299.31 Aligned_cols=312 Identities=16% Similarity=0.112 Sum_probs=242.0
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEE-EEecCCCEEEEEeCCCcEEEEEcccCcceeeec
Q 009993 143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR-AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDI 221 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 221 (520)
..+++++|+|++++|++|+.|+.|++||+.+++....+..|..... .+++++++|++|+.||.|++||+.++.
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL------ 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCE------
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcc------
Confidence 3455789999999999999999999999998877666666643333 445899999999999999999987652
Q ss_pred cCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CC
Q 009993 222 SGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GS 295 (520)
Q Consensus 222 ~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~ 295 (520)
....+.+|...|.+++| ++++|++|+.|++|++||+++++.+..+. |...|.++. ++++++++++ |+
T Consensus 131 -------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~ 203 (420)
T 3vl1_A 131 -------QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDG 203 (420)
T ss_dssp -------EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTS
T ss_pred -------eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCC
Confidence 34455789999999999 67899999999999999999999888887 899999887 7899999998 99
Q ss_pred eEEEEECCCCeeeEEeec--ccccc---------------------eEEEEecCCCCEEEEEeCCCeEEEEEcccCcccc
Q 009993 296 DVYIWDTNSGCLLTVVNG--AHVGN---------------------TKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA 352 (520)
Q Consensus 296 ~i~iwd~~~~~~~~~~~~--~~~~~---------------------i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~ 352 (520)
.|++||+++++.+..+.. .|... +.+++|+|++++|++|+.||.|++||++++.
T Consensus 204 ~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--- 280 (420)
T 3vl1_A 204 TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE--- 280 (420)
T ss_dssp CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC---
T ss_pred cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc---
Confidence 999999999998888763 23334 4445567899999999999999999999883
Q ss_pred ceeeeee-ecCCcCCEEEEEecCC---EEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccC-cceeeE
Q 009993 353 NVLLVAT-WIPHTGPVNSLAFEFP---WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG-FECNLL 427 (520)
Q Consensus 353 ~~~~~~~-~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~ 427 (520)
.... ..+|...|++++|+|+ +|++|+.||.|++||+++.. .+...+.+ |...+.
T Consensus 281 ---~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~------------------~~~~~~~~~~~~~v~ 339 (420)
T 3vl1_A 281 ---QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE------------------CPVGEFLINEGTPIN 339 (420)
T ss_dssp ---EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT------------------SCSEEEEESTTSCEE
T ss_pred ---eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc------------------CchhhhhccCCCCce
Confidence 3333 3468899999999873 99999999999999998742 11222232 455555
Q ss_pred EEEec-CCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCC---cccccc
Q 009993 428 SVDIG-ADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGG---RTDQCS 492 (520)
Q Consensus 428 ~~~~~-~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~---~~~~~s 492 (520)
++.+. +.+|++++.||.|++|++..+........ .............+..++|+|+|. ++.++.
T Consensus 340 ~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g 407 (420)
T 3vl1_A 340 NVYFAAGALFVSSGFDTSIKLDIISDPESERPAIE-FETPTFLVSNDDAVSQFCYVSDDESNGEVLEVG 407 (420)
T ss_dssp EEEEETTEEEEEETTTEEEEEEEECCTTCCSCEEC-TTSCEEECCSSCCCCEEEEECCSSSSCEEEEEE
T ss_pred EEEeCCCCEEEEecCCccEEEEeccCCCCCcccee-ccCccEEccCCcceEEEEEccCCCCcceEEEEc
Confidence 55544 45999999999999999987533221111 111112223345678899999999 555544
No 36
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.8e-36 Score=284.02 Aligned_cols=267 Identities=16% Similarity=0.206 Sum_probs=226.8
Q ss_pred hhhhhhcCCCCCCCCC-CCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 009993 106 EFYCERWGLPIASAPL-GAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS 180 (520)
Q Consensus 106 ~~~~~~~~~~~~~~~~-~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~ 180 (520)
.+.+..|+ |+....+ .+.+...++|+ ..++.+.+|..+|.+++|+|++++|++|+.|++|++||+.+++.+..+
T Consensus 15 ~V~~~~fs-p~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 93 (304)
T 2ynn_A 15 RVKGIDFH-PTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF 93 (304)
T ss_dssp CEEEEEEC-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ceEEEEEC-CCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEE
Confidence 35677787 5554433 34455668998 446788999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc---CCEEEEEec
Q 009993 181 KPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD---LTRIYSGSW 255 (520)
Q Consensus 181 ~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~ 255 (520)
.+|...|.++. |++.+|++|+.||+|++||+.++. .....+.+|...|.+++|+ +..|++|+.
T Consensus 94 ~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~------------~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW------------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT------------EEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc------------chhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 99999888776 899999999999999999997652 2445678999999999994 478999999
Q ss_pred CCeEEEEECCCCcEEEEee--eccCEEEEe----eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCC
Q 009993 256 DMTVRVWDRALLKCLKVLR--HSDWVYGLA----PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG 328 (520)
Q Consensus 256 dg~v~iwd~~~~~~~~~~~--~~~~v~~~~----~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~ 328 (520)
|++|++||++++.....+. +...+..+. +++.++++++ |+.|++||+++++++..+. +|...|.+++|+|++
T Consensus 162 D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~h~~~v~~~~~~p~~ 240 (304)
T 2ynn_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTL 240 (304)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSS
T ss_pred CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeC-CCCCCEEEEEECCCC
Confidence 9999999998887666654 556777766 3678999998 9999999999999999987 699999999999999
Q ss_pred CEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCC----EEEEEeCCCcEEEEeCCc
Q 009993 329 DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP----WLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 329 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~l~s~s~dg~i~vwd~~~ 393 (520)
.+|++|+.||+|++||+.+. +...++..|...+.+++|+|. ++++|+.|| +.+|++.+
T Consensus 241 ~~l~s~s~Dg~i~iWd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 241 PIIISGSEDGTLKIWNSSTY------KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp SEEEEEETTSCEEEEETTTC------CEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred CEEEEEcCCCeEEEEECCCC------ceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 99999999999999999998 778889999999999998762 577777655 77888764
No 37
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.7e-35 Score=280.45 Aligned_cols=272 Identities=21% Similarity=0.284 Sum_probs=229.6
Q ss_pred hccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEE---EEeC--CCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009993 138 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI---ASSK--PLGCTIRAVA--ADKKLLVAGGTDGFIHCWR 210 (520)
Q Consensus 138 l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~---~~~~--~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd 210 (520)
..+|.+.|++++|+|++++|++++ ||.|++||+.++... ..+. +|...+.++. +++++|++++.||.|++||
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 125 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence 348999999999999999999999 999999999877533 2222 6777777665 8999999999999999999
Q ss_pred cccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eC
Q 009993 211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PH 285 (520)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~ 285 (520)
+.++. ......+..|...|.+++| +++++++++.||.|++||+++++.+..+. |...|.++. ++
T Consensus 126 ~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~ 194 (337)
T 1gxr_A 126 LAAPT-----------PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND 194 (337)
T ss_dssp CCCC-------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred CCCCC-----------cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCC
Confidence 97653 1245567789999999999 67899999999999999999999888887 888999887 78
Q ss_pred CCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCc
Q 009993 286 DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT 364 (520)
Q Consensus 286 ~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 364 (520)
++.+++++ |+.|++||+++++.+..+. +...+.+++|+|+++++++++.||.|++||+++.. ...+..|.
T Consensus 195 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~-------~~~~~~~~ 265 (337)
T 1gxr_A 195 GTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-------KYQLHLHE 265 (337)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-------EEEECCCS
T ss_pred CCEEEEEecCCcEEEEECCCCceEeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC-------eEEEcCCc
Confidence 88999998 9999999999999888874 78899999999999999999999999999998872 34567899
Q ss_pred CCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEe--cCCEEEEec
Q 009993 365 GPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--GADRIVCGG 440 (520)
Q Consensus 365 ~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~ 440 (520)
..|++++|+| ++|++++.||.|++||+.+.... ....|...+.++.+ ++++|++++
T Consensus 266 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~--------------------~~~~~~~~v~~~~~s~~~~~l~~~~ 325 (337)
T 1gxr_A 266 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--------------------FQSKESSSVLSCDISVDDKYIVTGS 325 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE--------------------EEEECSSCEEEEEECTTSCEEEEEE
T ss_pred cceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE--------------------EEecCCCcEEEEEECCCCCEEEEec
Confidence 9999999975 69999999999999999874211 11224445555555 556999999
Q ss_pred CCCeEEEEeC
Q 009993 441 EEGIVRIWNF 450 (520)
Q Consensus 441 ~Dg~v~iwd~ 450 (520)
.||.|++|++
T Consensus 326 ~dg~i~iw~~ 335 (337)
T 1gxr_A 326 GDKKATVYEV 335 (337)
T ss_dssp TTSCEEEEEE
T ss_pred CCCeEEEEEE
Confidence 9999999996
No 38
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.3e-35 Score=280.56 Aligned_cols=263 Identities=17% Similarity=0.231 Sum_probs=221.6
Q ss_pred hhhhhcCCCCCCCCCC--CCCCCcccHH---------HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 009993 107 FYCERWGLPIASAPLG--AGFSDDKSWK---------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF 175 (520)
Q Consensus 107 ~~~~~~~~~~~~~~~~--~~~~~~~~W~---------~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~ 175 (520)
+.+..|. |.....+. +.+...++|+ ..++.+++|...|.+++|+|++++|++|+.|++|++||+.+++
T Consensus 20 V~~l~~~-~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~ 98 (319)
T 3frx_A 20 VTSLATS-AGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE 98 (319)
T ss_dssp EEEEEEC-SSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred EEEEEcc-CCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence 4566666 43323333 3355568896 2356789999999999999999999999999999999999999
Q ss_pred EEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC------
Q 009993 176 SIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL------ 247 (520)
Q Consensus 176 ~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~------ 247 (520)
.+..+.+|...|.++. +++.+|++|+.|++|++||+... ....+.+|...|.++.+.+
T Consensus 99 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~--------------~~~~~~~h~~~v~~~~~~~~~~~~~ 164 (319)
T 3frx_A 99 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--------------CLATLLGHNDWVSQVRVVPNEKADD 164 (319)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC--------------EEEEECCCSSCEEEEEECCC-----
T ss_pred eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------------eEEEEeccCCcEEEEEEccCCCCCC
Confidence 9999999999998876 88999999999999999998542 4567789999999999933
Q ss_pred --CEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEE
Q 009993 248 --TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKS 321 (520)
Q Consensus 248 --~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~ 321 (520)
..+++++.|++|++||+++++....+. |...|.++. |++++|++++ |+.|++||+.+++.+..+. +...|.+
T Consensus 165 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~ 242 (319)
T 3frx_A 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS--AQDEVFS 242 (319)
T ss_dssp -CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE--CCSCEEE
T ss_pred CccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEE
Confidence 379999999999999999998888776 899999887 8899999999 9999999999999988886 4578999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeee--------cCCcCCEEEEEecC--CEEEEEeCCCcEEEEeC
Q 009993 322 LARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW--------IPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDV 391 (520)
Q Consensus 322 l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~--------~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~ 391 (520)
++|+|++.++++++.+ .+++|++... ..+..+ ..|...+.+++|+| ++|++|+.||.|++||+
T Consensus 243 ~~~sp~~~~la~~~~~-~i~v~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 243 LAFSPNRYWLAAATAT-GIKVFSLDPQ------YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315 (319)
T ss_dssp EEECSSSSEEEEEETT-EEEEEEETTE------EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred EEEcCCCCEEEEEcCC-CcEEEEeCcC------eeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEE
Confidence 9999999999988765 4999999876 233332 23567899999976 69999999999999998
Q ss_pred Cc
Q 009993 392 RK 393 (520)
Q Consensus 392 ~~ 393 (520)
.+
T Consensus 316 ~t 317 (319)
T 3frx_A 316 MT 317 (319)
T ss_dssp EE
T ss_pred ee
Confidence 76
No 39
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.6e-36 Score=290.61 Aligned_cols=266 Identities=16% Similarity=0.171 Sum_probs=210.4
Q ss_pred hhhhhhcCCCCCCCCCCCCCCCcccHH---------------HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEE
Q 009993 106 EFYCERWGLPIASAPLGAGFSDDKSWK---------------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWH 170 (520)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~W~---------------~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd 170 (520)
.+.+..|+ |+..+++..+....+.|+ .+.....+|.+.|++++|+|++. +++++.||+|+|||
T Consensus 44 ~V~~v~fS-pDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd 121 (357)
T 4g56_B 44 QIGAVRYR-RDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWE 121 (357)
T ss_dssp EEEEEEEC-SSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC-
T ss_pred CEEEEEEC-CCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEee
Confidence 45778888 776665544433334443 22334467999999999999986 55678899999999
Q ss_pred CCCCcEEE----EeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEE
Q 009993 171 LEDGFSIA----SSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLA 244 (520)
Q Consensus 171 ~~~~~~~~----~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 244 (520)
+.+++... ...+|...|.++. |++++|++|+.||.|++||+.++. ....+.+|...|++++
T Consensus 122 ~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~-------------~~~~~~~h~~~v~~v~ 188 (357)
T 4g56_B 122 ILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA-------------VLKSYNAHSSEVNCVA 188 (357)
T ss_dssp -------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE-------------EEEEECCCSSCEEEEE
T ss_pred ccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-------------EEEEEcCCCCCEEEEE
Confidence 99886543 3357888887765 899999999999999999997753 5667789999999999
Q ss_pred E--cC-CEEEEEecCCeEEEEECCCCcEEEEee---eccCEEEEe--eC-CCEEEEEc-CCeEEEEECCCCeeeEEeecc
Q 009993 245 L--DL-TRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLA--PH-DTTVASTS-GSDVYIWDTNSGCLLTVVNGA 314 (520)
Q Consensus 245 ~--~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~--~~-~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~ 314 (520)
| ++ ..+++++.||+|++||+++++....+. +...+.++. |+ +.++++++ |+.|++||+++++.+..+. +
T Consensus 189 ~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~-~ 267 (357)
T 4g56_B 189 ACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA-V 267 (357)
T ss_dssp ECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC-C
T ss_pred EccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe-c
Confidence 9 33 579999999999999999998776654 667788887 44 56888888 8999999999999998887 6
Q ss_pred cccceEEEEecCCC-CEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEe
Q 009993 315 HVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLID 390 (520)
Q Consensus 315 ~~~~i~~l~~s~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd 390 (520)
|...|++++|+|++ .+|++|+.||+|+|||++++ +.+. ..+|.+.|++++|+| .+|++|+.||+|++|+
T Consensus 268 ~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~------~~~~-~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 268 HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS------EVFR-DLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC------EEEE-ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC------cEeE-ECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence 99999999999987 57999999999999999887 4444 348999999999976 5999999999999999
Q ss_pred CCcc
Q 009993 391 VRKL 394 (520)
Q Consensus 391 ~~~~ 394 (520)
+.+.
T Consensus 341 ~~~~ 344 (357)
T 4g56_B 341 LPSE 344 (357)
T ss_dssp CC--
T ss_pred CCCC
Confidence 9764
No 40
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-36 Score=301.18 Aligned_cols=318 Identities=14% Similarity=0.141 Sum_probs=247.2
Q ss_pred ccccEEEEEEccCCC-EEEEE----------eCCCeEEEEECCCCc---EEEEeCCCCceEEEEe--cCCCEEEEEeCCC
Q 009993 141 HTEAVLTVFVLASAK-LLFTS----------GYDSIVRMWHLEDGF---SIASSKPLGCTIRAVA--ADKKLLVAGGTDG 204 (520)
Q Consensus 141 h~~~V~~l~~~~~~~-~l~sg----------s~dg~v~vwd~~~~~---~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg 204 (520)
+...|.+++|+|+++ +|++| +.|+.|++||+.++. .+..+ .|...|.++. +++.+|++|+.||
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence 456789999999987 99999 899999999999876 33333 4677777665 8999999999999
Q ss_pred cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--c-CCEEEEEecCCeEEEEECCCCc------EEEEe--
Q 009993 205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D-LTRIYSGSWDMTVRVWDRALLK------CLKVL-- 273 (520)
Q Consensus 205 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~-~~~l~s~s~dg~v~iwd~~~~~------~~~~~-- 273 (520)
.|++||+.+.. ........+.+|...|.+++| + +++|++++.||+|++||+.+++ ....+
T Consensus 90 ~v~vw~~~~~~---------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 160 (416)
T 2pm9_A 90 SLELYSTNEAN---------NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ 160 (416)
T ss_dssp CEEEECCSSTT---------SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCC
T ss_pred eEEEeeccccc---------ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccc
Confidence 99999987621 012256677889999999999 3 6899999999999999999886 33333
Q ss_pred --eeccCEEEEe--eC-CCEEEEEc-CCeEEEEECCCCeeeEEeeccc-----ccceEEEEecCCC-CEEEEEeCCC---
Q 009993 274 --RHSDWVYGLA--PH-DTTVASTS-GSDVYIWDTNSGCLLTVVNGAH-----VGNTKSLARSHTG-DFLFTGGEDG--- 338 (520)
Q Consensus 274 --~~~~~v~~~~--~~-~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~-----~~~i~~l~~s~~~-~~l~tg~~dg--- 338 (520)
.|...|.++. ++ +.++++++ |+.|++||+++++.+..+...+ ...+.+++|+|++ .++++++.|+
T Consensus 161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~ 240 (416)
T 2pm9_A 161 SMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDP 240 (416)
T ss_dssp SCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSC
T ss_pred ccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCc
Confidence 3778888887 66 67899988 9999999999999988886321 7899999999997 6899999999
Q ss_pred eEEEEEcccCccccceeeeeeec-CCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCC
Q 009993 339 AIHMYEIINDCTEANVLLVATWI-PHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEP 414 (520)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 414 (520)
.|++||+++.. .++..+. +|...|++++|+| .+|++++.||.|++||+++. .
T Consensus 241 ~i~~~d~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~-------------------~ 296 (416)
T 2pm9_A 241 SILIWDLRNAN-----TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA-------------------E 296 (416)
T ss_dssp CCCEEETTSTT-----SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC-------------------C
T ss_pred eEEEEeCCCCC-----CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC-------------------c
Confidence 99999999863 3566677 8999999999965 69999999999999999873 2
Q ss_pred CcccccCcceeeEEEEec--C-CEEEEecCCCeEEEEeCCchHhHHHHhh--------------hhc-----------cc
Q 009993 415 PQRMLHGFECNLLSVDIG--A-DRIVCGGEEGIVRIWNFSQAFEIERRAR--------------ALR-----------GI 466 (520)
Q Consensus 415 ~~~~~~~~~~~v~~~~~~--~-~~l~sg~~Dg~v~iwd~~~~~~~~~~~~--------------~~~-----------~~ 466 (520)
....+.+|...+.++.++ + .+|++++.||.|++|++.+......... ... ..
T Consensus 297 ~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (416)
T 2pm9_A 297 QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL 376 (416)
T ss_dssp EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCC
T ss_pred cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc
Confidence 333445666666665554 4 5999999999999999987653221100 000 00
Q ss_pred ccchhhhhccceeeeccCCCcccccc
Q 009993 467 RLENRMRRRKLQTEMSSKGGRTDQCS 492 (520)
Q Consensus 467 ~~~~~~~~~~~~~~~s~~g~~~~~~s 492 (520)
.......+....++|+|||+.+++++
T Consensus 377 ~~~~~~~~~~~~~~~s~dg~~la~~~ 402 (416)
T 2pm9_A 377 QAPTWYGEPSPAAHWAFGGKLVQITP 402 (416)
T ss_dssp CCCSTTCCCSCCCEEETTTEEECBCT
T ss_pred cCCccccCCccceEEeeCCeEEEEeC
Confidence 11122445556899999999999887
No 41
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.3e-34 Score=325.02 Aligned_cols=330 Identities=15% Similarity=0.215 Sum_probs=261.9
Q ss_pred hhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEccc
Q 009993 136 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVE 213 (520)
Q Consensus 136 ~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~ 213 (520)
..+.+|.+.|++++|+|+|++|++|+.||+|++||+.+++.+..+.+|...|.++. |++++|++|+.||.|++||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 35679999999999999999999999999999999999999999999999988766 8999999999999999999987
Q ss_pred CcceeeeccCCccccceEEeccCCCCeEEEEE----cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCC
Q 009993 214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHD 286 (520)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~ 286 (520)
+. ....+.+|...|.+++| ++..+++|+.|++|++||+.+++++..+. |...|.++. +++
T Consensus 689 ~~-------------~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~ 755 (1249)
T 3sfz_A 689 GK-------------LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD 755 (1249)
T ss_dssp CC-------------EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSST
T ss_pred Cc-------------eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCC
Confidence 63 55667789999999999 23578899999999999999999888876 888888877 888
Q ss_pred CEEEEEc-CCeEEEEECCCCeeeEEe------------------------------------------------------
Q 009993 287 TTVASTS-GSDVYIWDTNSGCLLTVV------------------------------------------------------ 311 (520)
Q Consensus 287 ~~l~~~~-d~~i~iwd~~~~~~~~~~------------------------------------------------------ 311 (520)
+++++++ ||.|++||+.++.....+
T Consensus 756 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~ 835 (1249)
T 3sfz_A 756 ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEI 835 (1249)
T ss_dssp TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEE
T ss_pred CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEE
Confidence 8999888 899999998776543332
Q ss_pred ecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEE
Q 009993 312 NGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLI 389 (520)
Q Consensus 312 ~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vw 389 (520)
..+|...+.+++|+|++.++++++.||.|++||+.++ ..+..+.+|.+.|++++|+| .+|++++.||.|++|
T Consensus 836 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~------~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw 909 (1249)
T 3sfz_A 836 HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR------LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 909 (1249)
T ss_dssp ECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC------ceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEE
Confidence 2257788999999999999999999999999999988 77888999999999999976 699999999999999
Q ss_pred eCCcccccCCCCCCCcee--------------------eeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEe
Q 009993 390 DVRKLLRSGRPTSGKRVS--------------------RVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWN 449 (520)
Q Consensus 390 d~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd 449 (520)
|+.+.............. ....................+++++++++++|+.||.|++|+
T Consensus 910 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d 989 (1249)
T 3sfz_A 910 ETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIE 989 (1249)
T ss_dssp EHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEE
T ss_pred EccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEE
Confidence 987543222111110000 000001111111223344556666777999999999999999
Q ss_pred CCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccccc
Q 009993 450 FSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVA 494 (520)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~ 494 (520)
+.++..... ...+...+..++|+|+|+.+++++.+
T Consensus 990 ~~~~~~~~~----------~~~h~~~v~~l~~s~dg~~l~s~~~d 1024 (1249)
T 3sfz_A 990 LPNNRVFSS----------GVGHKKAVRHIQFTADGKTLISSSED 1024 (1249)
T ss_dssp TTTTSCEEE----------CCCCSSCCCCEEECSSSSCEEEECSS
T ss_pred cCCCceeee----------cccCCCceEEEEECCCCCEEEEEcCC
Confidence 987643221 12334557889999999999988743
No 42
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.6e-35 Score=287.00 Aligned_cols=277 Identities=11% Similarity=0.038 Sum_probs=217.0
Q ss_pred hhhhccccccEEEEEEccCC-CEEEEEeCCCeEEEEECCCCcEEEEeC--CCCceEEEEe--c-CCCEEEEEeCCCcEEE
Q 009993 135 IDVLYGHTEAVLTVFVLASA-KLLFTSGYDSIVRMWHLEDGFSIASSK--PLGCTIRAVA--A-DKKLLVAGGTDGFIHC 208 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~-~~l~sgs~dg~v~vwd~~~~~~~~~~~--~~~~~v~~~~--~-~~~~l~sg~~dg~i~v 208 (520)
.+.+.+|.+.|++++|+|++ ++|++|+.||.|++||+.+++....+. +|...|.++. | ++.+|++++.||.|++
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i 145 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL 145 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence 55778999999999999999 999999999999999999888777765 6888888776 6 6789999999999999
Q ss_pred EEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--
Q 009993 209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA-- 283 (520)
Q Consensus 209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~-- 283 (520)
||+.+... .......+|...|.+++| ++.++++|+.|+.|++||+ +++.+..+. |...|.++.
T Consensus 146 wd~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~ 213 (383)
T 3ei3_B 146 RDFSGSVI-----------QVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFN 213 (383)
T ss_dssp EETTSCEE-----------EEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEEC
T ss_pred EECCCCce-----------EEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEEC
Confidence 99875321 111122345588999999 7789999999999999999 566777766 899999988
Q ss_pred eCCC-EEEEEc-CCeEEEEECCC----CeeeEEeecccccceEEEEecC-CCCEEEEEeCCCeEEEEEcccCccccceee
Q 009993 284 PHDT-TVASTS-GSDVYIWDTNS----GCLLTVVNGAHVGNTKSLARSH-TGDFLFTGGEDGAIHMYEIINDCTEANVLL 356 (520)
Q Consensus 284 ~~~~-~l~~~~-d~~i~iwd~~~----~~~~~~~~~~~~~~i~~l~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~ 356 (520)
+++. ++++++ |+.|++||+++ +..+..+ +|...|.+++|+| ++.+|++++.|+.|++||++++..
T Consensus 214 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~------ 285 (383)
T 3ei3_B 214 PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK------ 285 (383)
T ss_dssp SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS------
T ss_pred CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc------
Confidence 7777 888888 99999999998 5666666 4999999999999 999999999999999999998743
Q ss_pred eeeecC-------CcC----------CEEEEEecC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCccc
Q 009993 357 VATWIP-------HTG----------PVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRM 418 (520)
Q Consensus 357 ~~~~~~-------h~~----------~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (520)
...+.+ |.. .+..++|+| ..+ +|+.||.|++||+.++.. ...
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~-------------------~~~ 345 (383)
T 3ei3_B 286 PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGL-------------------VHQ 345 (383)
T ss_dssp CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCE-------------------EEE
T ss_pred ccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCce-------------------eee
Confidence 223322 222 344455543 122 777999999999987422 222
Q ss_pred ccC--cce--eeEEEEecCCEEEEecCCCeEEEEeCCc
Q 009993 419 LHG--FEC--NLLSVDIGADRIVCGGEEGIVRIWNFSQ 452 (520)
Q Consensus 419 ~~~--~~~--~v~~~~~~~~~l~sg~~Dg~v~iwd~~~ 452 (520)
+.+ |.. .+.++++++.+|++|+ ||.|++||+++
T Consensus 346 l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 346 LRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred ecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 222 233 3345666777999997 99999999975
No 43
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-36 Score=298.21 Aligned_cols=310 Identities=11% Similarity=0.143 Sum_probs=228.2
Q ss_pred cHH---Hhhhhh-ccccccEEEEEEcc-CCCEEEEEeCCCeEEEEECCC---Cc---EEEEeCCCCceEEEEe--cCCCE
Q 009993 130 SWK---ELIDVL-YGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLED---GF---SIASSKPLGCTIRAVA--ADKKL 196 (520)
Q Consensus 130 ~W~---~~~~~l-~~h~~~V~~l~~~~-~~~~l~sgs~dg~v~vwd~~~---~~---~~~~~~~~~~~v~~~~--~~~~~ 196 (520)
.|+ +++..+ ++|.+.|++++|+| ++++|++|+.||+|+|||+.+ +. ....+ .|...|.++. +++.+
T Consensus 47 ~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~ 125 (437)
T 3gre_A 47 MGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDA 125 (437)
T ss_dssp GGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSE
T ss_pred cccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCE
Confidence 365 456667 89999999999999 999999999999999999876 43 22222 4777787766 88999
Q ss_pred EEEEeCCCcEEEEEcc---cCcceeeeccCCccccceEEecc--CCCCeEEEEE----cCCEEEEEecCCeEEEEECCCC
Q 009993 197 LVAGGTDGFIHCWRAV---EVLPHLFDISGSEKQNTQFRLWE--HEGPITSLAL----DLTRIYSGSWDMTVRVWDRALL 267 (520)
Q Consensus 197 l~sg~~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~----~~~~l~s~s~dg~v~iwd~~~~ 267 (520)
|++|+.||.|++||+. ++..... .... ......+.. +...+.++.+ ++.++++|+.|++|++||++++
T Consensus 126 l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 202 (437)
T 3gre_A 126 FAVSSKDGQIIVLKVNHYQQESEVKF-LNCE--CIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL 202 (437)
T ss_dssp EEEEETTSEEEEEEEEEEEETTEEEE-EEEE--EEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC
T ss_pred EEEEeCCCEEEEEEeccccCCceeec-cccc--eeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence 9999999999999995 3321110 0000 011111222 6677888885 4789999999999999999999
Q ss_pred cEEEEee---eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEec----CCCCEEEEEeCC
Q 009993 268 KCLKVLR---HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARS----HTGDFLFTGGED 337 (520)
Q Consensus 268 ~~~~~~~---~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s----~~~~~l~tg~~d 337 (520)
+++..+. |...|.++. +++.++++++ |+.|++||+++++.+..+..+|...|.+++|+ |++.+|++|+.|
T Consensus 203 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~d 282 (437)
T 3gre_A 203 ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSK 282 (437)
T ss_dssp CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTT
T ss_pred eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCC
Confidence 9998886 678999988 7899999999 99999999999999988865688899999555 567899999999
Q ss_pred CeEEEEEcccCccccceeeeeeec------------------------C--CcCCEEEEEecC-CEEEEEeCCCcEEEEe
Q 009993 338 GAIHMYEIINDCTEANVLLVATWI------------------------P--HTGPVNSLAFEF-PWLVSAAGDGKLSLID 390 (520)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~------------------------~--h~~~v~~l~~~~-~~l~s~s~dg~i~vwd 390 (520)
|.|++||++++. .+..+. + |...|++++|++ .+|++|+.||.|++||
T Consensus 283 g~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 283 TFLTIWNFVKGH------CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFS 356 (437)
T ss_dssp EEEEEEETTTTE------EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEE
T ss_pred CcEEEEEcCCCc------EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEE
Confidence 999999998873 332222 2 677789999975 5899999999999999
Q ss_pred CCcccccCCCCCCC----ceeeee--------------ecCCCcccccCcceeeEEEEecCC----EEEEecCCCeEEEE
Q 009993 391 VRKLLRSGRPTSGK----RVSRVI--------------EVEPPQRMLHGFECNLLSVDIGAD----RIVCGGEEGIVRIW 448 (520)
Q Consensus 391 ~~~~~~~~~~~~~~----~~~~~~--------------~~~~~~~~~~~~~~~v~~~~~~~~----~l~sg~~Dg~v~iw 448 (520)
+.++.......... ...... ...........|...|.++.+.+. +|++|+.||.|+||
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw 436 (437)
T 3gre_A 357 LNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIF 436 (437)
T ss_dssp TTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEE
T ss_pred CCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEe
Confidence 99875443222110 000000 000111223347777777776543 99999999999999
Q ss_pred e
Q 009993 449 N 449 (520)
Q Consensus 449 d 449 (520)
+
T Consensus 437 ~ 437 (437)
T 3gre_A 437 Q 437 (437)
T ss_dssp C
T ss_pred C
Confidence 5
No 44
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.9e-35 Score=288.57 Aligned_cols=299 Identities=13% Similarity=0.168 Sum_probs=239.6
Q ss_pred CCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEE
Q 009993 125 FSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLV 198 (520)
Q Consensus 125 ~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~ 198 (520)
+...++|+ +....+.+| ..+....|+|++++|++|+.||.|++||+.+++....+.+|...|.++. |++++|+
T Consensus 77 d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 155 (420)
T 3vl1_A 77 DGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALI 155 (420)
T ss_dssp TTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEE
T ss_pred CCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEE
Confidence 44557777 445566666 5555667899999999999999999999999999888889999988776 8999999
Q ss_pred EEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee--
Q 009993 199 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-- 274 (520)
Q Consensus 199 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-- 274 (520)
+|+.||.|++||+.++. ....+.+|...|.+++| ++++|++++.||+|++||+++++.+..+.
T Consensus 156 s~s~d~~i~iwd~~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 222 (420)
T 3vl1_A 156 SSSQDMQLKIWSVKDGS-------------NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRK 222 (420)
T ss_dssp EEETTSEEEEEETTTCC-------------CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBT
T ss_pred EEeCCCeEEEEeCCCCc-------------CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecC
Confidence 99999999999997753 45567789999999999 67899999999999999999999988876
Q ss_pred --eccCEEEEe-----------------------eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCC
Q 009993 275 --HSDWVYGLA-----------------------PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG 328 (520)
Q Consensus 275 --~~~~v~~~~-----------------------~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~ 328 (520)
+...+.++. ++++++++++ ||.|++||+++++.+..+..+|...|.+++|+|++
T Consensus 223 ~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 302 (420)
T 3vl1_A 223 ENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNN 302 (420)
T ss_dssp TBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSC
T ss_pred CCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCC
Confidence 344454443 5788999988 99999999999998888877789999999999999
Q ss_pred C-EEEEEeCCCeEEEEEcccCccccceeeeeeecC-CcCCEEEEEecC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCc
Q 009993 329 D-FLFTGGEDGAIHMYEIINDCTEANVLLVATWIP-HTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKR 405 (520)
Q Consensus 329 ~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 405 (520)
. +|++|+.||.|++||++++. .++..+.+ |...|+++.+.+ .+|++++.||.|++||+.........
T Consensus 303 ~~~l~~g~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~----- 372 (420)
T 3vl1_A 303 ANYIYAGYENGMLAQWDLRSPE-----CPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPA----- 372 (420)
T ss_dssp TTEEEEEETTSEEEEEETTCTT-----SCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCE-----
T ss_pred CCEEEEEeCCCeEEEEEcCCCc-----CchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccc-----
Confidence 9 99999999999999999873 23555555 778899998854 69999999999999999874222110
Q ss_pred eeeeeecCCCcccccCcceee--EEEEecCC---EEEEecCCCeEEEEeCCc
Q 009993 406 VSRVIEVEPPQRMLHGFECNL--LSVDIGAD---RIVCGGEEGIVRIWNFSQ 452 (520)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~---~l~sg~~Dg~v~iwd~~~ 452 (520)
.. ......+.+|...+ .++++++. .+++++.+|.+.+|++++
T Consensus 373 ----~~-~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 373 ----IE-FETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp ----EC-TTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ----ee-ccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 00 11111233444444 45556666 688888899999999975
No 45
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.2e-34 Score=301.15 Aligned_cols=322 Identities=15% Similarity=0.163 Sum_probs=250.1
Q ss_pred CcccHH--HhhhhhccccccEEEEEEccCCC-EEEEEeCCCeEEEEECCCCcEEEEeCCCCc---eEEEEe--cC-CCEE
Q 009993 127 DDKSWK--ELIDVLYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSKPLGC---TIRAVA--AD-KKLL 197 (520)
Q Consensus 127 ~~~~W~--~~~~~l~~h~~~V~~l~~~~~~~-~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~---~v~~~~--~~-~~~l 197 (520)
....|+ +....+.+|.+.|++++|+|+++ ++++|+.|+.|++||+.+++.+..+.+|.. .|.++. |+ +++|
T Consensus 143 ~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 222 (615)
T 1pgu_A 143 VFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFV 222 (615)
T ss_dssp EEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEE
T ss_pred EEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEE
Confidence 346677 45677899999999999999998 899999999999999999999999999988 787765 88 9999
Q ss_pred EEEeCCCcEEEEEcccCcceeeeccCCccccceEEe-c---cCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEE
Q 009993 198 VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL-W---EHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKV 272 (520)
Q Consensus 198 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~---~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~ 272 (520)
++++.||.|++||+.++. ....+ . +|...|.+++| ++.++++++.|+.|++||+++++.+..
T Consensus 223 ~~~~~dg~i~vwd~~~~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~ 289 (615)
T 1pgu_A 223 ITVGSDRKISCFDGKSGE-------------FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQK 289 (615)
T ss_dssp EEEETTCCEEEEETTTCC-------------EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred EEEeCCCeEEEEECCCCC-------------EeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEE
Confidence 999999999999997763 34444 4 89999999999 889999999999999999999999888
Q ss_pred eeec-----cCEEEEe-eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCC------------------
Q 009993 273 LRHS-----DWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT------------------ 327 (520)
Q Consensus 273 ~~~~-----~~v~~~~-~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~------------------ 327 (520)
+... ..+.++. +++.++++++ ++.|++||+.+++.+..+. +|...|.+++| |+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~ 367 (615)
T 1pgu_A 290 WTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTIS-GHNKGITALTV-NPLISGSYDGRIMEWSSSSM 367 (615)
T ss_dssp EECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEEC-CCSSCEEEEET-TTTEEEETTSCEEETTTTEE
T ss_pred EcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEe-CCCCCEEEEEe-cCcEEECCCCeEEEEEchhh
Confidence 8733 5666666 6888999888 9999999999888777765 45555555554 33
Q ss_pred ---------------CCEEEEEeCCCeEEEEEcccCcc------------------------------------------
Q 009993 328 ---------------GDFLFTGGEDGAIHMYEIINDCT------------------------------------------ 350 (520)
Q Consensus 328 ---------------~~~l~tg~~dg~i~iwd~~~~~~------------------------------------------ 350 (520)
+..+++++.|+.|++||+.+...
T Consensus 368 ~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (615)
T 1pgu_A 368 HQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS 447 (615)
T ss_dssp ECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred cCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCC
Confidence 55566666666666665543210
Q ss_pred ------------------ccce--------eee-eeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCC
Q 009993 351 ------------------EANV--------LLV-ATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPT 401 (520)
Q Consensus 351 ------------------~~~~--------~~~-~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~ 401 (520)
...+ ... ..+.+|...|++++|+| ++|++++.||.|++||+.++..
T Consensus 448 ~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~----- 522 (615)
T 1pgu_A 448 PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV----- 522 (615)
T ss_dssp CEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----
T ss_pred CceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcc-----
Confidence 0000 111 55678999999999976 7999999999999999987422
Q ss_pred CCCceeeeeecCCCcccccC-cceeeEEEEe------------cCCEEEEecCCCeEEEEeCCchH-hHHHHhhhhcccc
Q 009993 402 SGKRVSRVIEVEPPQRMLHG-FECNLLSVDI------------GADRIVCGGEEGIVRIWNFSQAF-EIERRARALRGIR 467 (520)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~------------~~~~l~sg~~Dg~v~iwd~~~~~-~~~~~~~~~~~~~ 467 (520)
...+.+ |...|.++.+ ++.+|++|+.||.|++||+.++. .+.
T Consensus 523 --------------~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~---------- 578 (615)
T 1pgu_A 523 --------------KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK---------- 578 (615)
T ss_dssp --------------EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEE----------
T ss_pred --------------eeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceech----------
Confidence 222344 6677777776 45599999999999999998763 211
Q ss_pred cchhhhhccceeeeccCCCccccccc
Q 009993 468 LENRMRRRKLQTEMSSKGGRTDQCSV 493 (520)
Q Consensus 468 ~~~~~~~~~~~~~~s~~g~~~~~~s~ 493 (520)
....+...+..++|+|+|+ +++++.
T Consensus 579 ~~~~h~~~v~~l~~s~~~~-l~s~~~ 603 (615)
T 1pgu_A 579 ALNAHKDGVNNLLWETPST-LVSSGA 603 (615)
T ss_dssp ETTSSTTCEEEEEEEETTE-EEEEET
T ss_pred hhhcCccceEEEEEcCCCC-eEEecC
Confidence 1223355688999999999 887764
No 46
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.5e-35 Score=287.89 Aligned_cols=266 Identities=20% Similarity=0.297 Sum_probs=218.5
Q ss_pred hhhhhhcCCCCCCCCCCCCCCCcccHH----Hhhhhhcccc------------------ccEEEEEEccCCCEEEEEeCC
Q 009993 106 EFYCERWGLPIASAPLGAGFSDDKSWK----ELIDVLYGHT------------------EAVLTVFVLASAKLLFTSGYD 163 (520)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~W~----~~~~~l~~h~------------------~~V~~l~~~~~~~~l~sgs~d 163 (520)
.++|..|+ |+............++|+ +.+..+.+|. ..|++++|+|+|++|++|+.|
T Consensus 66 ~V~~v~fs-pdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d 144 (393)
T 1erj_A 66 VVCCVKFS-NDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAED 144 (393)
T ss_dssp CCCEEEEC-TTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEEC-CCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCC
Confidence 35677787 565555444445557776 2333444443 349999999999999999999
Q ss_pred CeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeE
Q 009993 164 SIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPIT 241 (520)
Q Consensus 164 g~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 241 (520)
++|++||+.+++.+..+.+|...|.++. +++.+|++|+.|++|++||+.++. ....+ .+...+.
T Consensus 145 ~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~-------------~~~~~-~~~~~v~ 210 (393)
T 1erj_A 145 RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-------------CSLTL-SIEDGVT 210 (393)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-------------EEEEE-ECSSCEE
T ss_pred CeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe-------------eEEEE-EcCCCcE
Confidence 9999999999999999999999888776 899999999999999999998763 22222 3667899
Q ss_pred EEEE---cCCEEEEEecCCeEEEEECCCCcEEEEe--------eeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCe-
Q 009993 242 SLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVL--------RHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGC- 306 (520)
Q Consensus 242 ~l~~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~--------~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~- 306 (520)
++++ ++.++++|+.|++|++||+++++.+..+ .|...|.++. ++++++++++ |+.|++||+++..
T Consensus 211 ~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~ 290 (393)
T 1erj_A 211 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 290 (393)
T ss_dssp EEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCC
Confidence 9998 5689999999999999999999887766 2778899887 7899999999 9999999997642
Q ss_pred -----------eeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-
Q 009993 307 -----------LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF- 374 (520)
Q Consensus 307 -----------~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~- 374 (520)
+...+. +|...|.+++|+|++.+|++|+.||.|++||+.++ .++..+.+|...|.+++|++
T Consensus 291 ~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~------~~~~~l~~h~~~v~~v~~~~~ 363 (393)
T 1erj_A 291 KSDSKTPNSGTCEVTYI-GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG------NPLLMLQGHRNSVISVAVANG 363 (393)
T ss_dssp ----------CEEEEEE-CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEECSS
T ss_pred cccccCCCCCcceEEEe-cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC------eEEEEECCCCCCEEEEEecCC
Confidence 334444 69999999999999999999999999999999988 67888999999999999964
Q ss_pred -------CEEEEEeCCCcEEEEeCCc
Q 009993 375 -------PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 375 -------~~l~s~s~dg~i~vwd~~~ 393 (520)
++|++|+.||+|++|++..
T Consensus 364 ~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 364 SSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp CTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred cCcCCCCCEEEEECCCCcEEECcccc
Confidence 5899999999999999875
No 47
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-36 Score=294.80 Aligned_cols=298 Identities=12% Similarity=0.073 Sum_probs=219.9
Q ss_pred hccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC--cEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEccc
Q 009993 138 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG--FSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVE 213 (520)
Q Consensus 138 l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~--~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~ 213 (520)
++.|.++|++++|+|++++|++|+.|+.|++||+.++ +.+..+.+|...|.++. +++++|++|+.||.|++||+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 4557789999999999999999999999999999988 77888899999888776 8899999999999999999977
Q ss_pred CcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcE---EEEee--eccCEEEEe--e
Q 009993 214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKC---LKVLR--HSDWVYGLA--P 284 (520)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~---~~~~~--~~~~v~~~~--~ 284 (520)
+. .......+.+|...|.+++| ++++|++++.|++|++||+++++. ...+. |...|.++. +
T Consensus 87 ~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 156 (377)
T 3dwl_C 87 DG----------TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP 156 (377)
T ss_dssp ------------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT
T ss_pred CC----------ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC
Confidence 53 12245667789999999999 678999999999999999998873 55554 889999988 7
Q ss_pred CCCEEEEEc-CCeEEEEECC------------------CCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEc
Q 009993 285 HDTTVASTS-GSDVYIWDTN------------------SGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI 345 (520)
Q Consensus 285 ~~~~l~~~~-d~~i~iwd~~------------------~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~ 345 (520)
+++++++++ |+.|++||++ .++.+..+ +|...|++++|+|++++|++|+.||.|++||+
T Consensus 157 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~ 234 (377)
T 3dwl_C 157 NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYP 234 (377)
T ss_dssp TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEE
T ss_pred CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 889999998 9999999985 34455555 69999999999999999999999999999999
Q ss_pred ccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccC-C-CCCCCc----------------
Q 009993 346 INDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSG-R-PTSGKR---------------- 405 (520)
Q Consensus 346 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~-~-~~~~~~---------------- 405 (520)
.++... ...+..+.+|..+|++++|+| .+|++|+.|+.+ +|+........ . ......
T Consensus 235 ~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (377)
T 3dwl_C 235 SAPEQP--PRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREE 311 (377)
T ss_dssp CSTTSC--EEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC
T ss_pred CCCCCc--ceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccc
Confidence 988321 112778889999999999965 577777655555 77765321110 0 000000
Q ss_pred eee---------eee------cCCCcccccCcceeeEEEEecC---C---EEEEecCCCeEEEEeC
Q 009993 406 VSR---------VIE------VEPPQRMLHGFECNLLSVDIGA---D---RIVCGGEEGIVRIWNF 450 (520)
Q Consensus 406 ~~~---------~~~------~~~~~~~~~~~~~~v~~~~~~~---~---~l~sg~~Dg~v~iwd~ 450 (520)
... +.. ..........|...|.++.+.+ . .|+|||.||.|++||+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 312 EGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 000 000 0011122334888888887532 2 6999999999999985
No 48
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-36 Score=298.44 Aligned_cols=318 Identities=15% Similarity=0.141 Sum_probs=242.5
Q ss_pred CCCcccHHHh------hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCC----CcEEEEeCCCCceEEEEe--c
Q 009993 125 FSDDKSWKEL------IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED----GFSIASSKPLGCTIRAVA--A 192 (520)
Q Consensus 125 ~~~~~~W~~~------~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~----~~~~~~~~~~~~~v~~~~--~ 192 (520)
+...++|+.. ......|...|++++|+|++++|++|+.||.|++||+.+ ...+..+.+|...|.++. +
T Consensus 44 d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 123 (416)
T 2pm9_A 44 DSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNA 123 (416)
T ss_dssp CCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECS
T ss_pred CCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcC
Confidence 4456889721 122246899999999999999999999999999999987 457888889988887765 7
Q ss_pred C-CCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--c-CCEEEEEecCCeEEEEECCCCc
Q 009993 193 D-KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D-LTRIYSGSWDMTVRVWDRALLK 268 (520)
Q Consensus 193 ~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~-~~~l~s~s~dg~v~iwd~~~~~ 268 (520)
+ +.+|++|+.||.|++||+.++...... ..........+|...|.+++| + +.++++++.||.|++||+++++
T Consensus 124 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 199 (416)
T 2pm9_A 124 KQDNVLASGGNNGEIFIWDMNKCTESPSN----YTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK 199 (416)
T ss_dssp SSTTBEEEECSSSCEEBCBTTTTSSCTTT----CCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcccccc----ccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC
Confidence 6 889999999999999999876310000 001112234579999999999 3 5789999999999999999999
Q ss_pred EEEEee-e------ccCEEEEe--eCC-CEEEEEc-CC---eEEEEECCCC-eeeEEeecccccceEEEEecC-CCCEEE
Q 009993 269 CLKVLR-H------SDWVYGLA--PHD-TTVASTS-GS---DVYIWDTNSG-CLLTVVNGAHVGNTKSLARSH-TGDFLF 332 (520)
Q Consensus 269 ~~~~~~-~------~~~v~~~~--~~~-~~l~~~~-d~---~i~iwd~~~~-~~~~~~~~~~~~~i~~l~~s~-~~~~l~ 332 (520)
.+..+. + ...|.++. +++ .++++++ |+ .|++||++++ ..+..+..+|...|.+++|+| ++.+|+
T Consensus 200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~ 279 (416)
T 2pm9_A 200 EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLL 279 (416)
T ss_dssp EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEE
T ss_pred cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEE
Confidence 988887 3 67899888 665 5888888 77 9999999987 455555426999999999999 999999
Q ss_pred EEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcccccCCCCC---CCce
Q 009993 333 TGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTS---GKRV 406 (520)
Q Consensus 333 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~---~~~~ 406 (520)
+++.||.|++||++++ ..+..+.+|...|++++|+| .+|++++.||.|++||+.+......... ....
T Consensus 280 s~~~dg~v~~wd~~~~------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 353 (416)
T 2pm9_A 280 SSGRDNTVLLWNPESA------EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQE 353 (416)
T ss_dssp EEESSSEEEEECSSSC------CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC---------
T ss_pred EEeCCCCEEEeeCCCC------ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccC
Confidence 9999999999999988 67888899999999999976 6899999999999999987644322111 0000
Q ss_pred e--eeeec------------CCCcccccCccee--eEEEEecCCEEEEecCCCeEEEEeCCch
Q 009993 407 S--RVIEV------------EPPQRMLHGFECN--LLSVDIGADRIVCGGEEGIVRIWNFSQA 453 (520)
Q Consensus 407 ~--~~~~~------------~~~~~~~~~~~~~--v~~~~~~~~~l~sg~~Dg~v~iwd~~~~ 453 (520)
. .+... ... .....|... ..++++++++|++|+.||.|+||++.++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 354 SETDFWNNVSREESKEKPSVFHL-QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp -------------CCSCCCSSCC-CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred Ccccccccccccccccccccccc-cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 0 00000 000 111113333 4677788889999999999999999864
No 49
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-35 Score=291.78 Aligned_cols=289 Identities=14% Similarity=0.121 Sum_probs=234.4
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccee
Q 009993 141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHL 218 (520)
Q Consensus 141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~ 218 (520)
|.+.|++++|+|++++|++|+.||.|++|| .++..+..+..|...|.++. +++++|++++.||.|++||+.++.
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--- 182 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT--- 182 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE---
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc---
Confidence 788999999999999999999999999999 67888899999998888776 899999999999999999997763
Q ss_pred eeccCCccccceEEeccCCCC---------------eEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEE
Q 009993 219 FDISGSEKQNTQFRLWEHEGP---------------ITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYG 281 (520)
Q Consensus 219 ~~~~~~~~~~~~~~~~~h~~~---------------v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~ 281 (520)
....+..+... +.+++| .++.+++++.||.|++||+.+++.+..+. |...|.+
T Consensus 183 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~ 252 (425)
T 1r5m_A 183 ----------VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISV 252 (425)
T ss_dssp ----------EEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEE
T ss_pred ----------EEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEE
Confidence 23334444444 888888 66889999999999999999998888776 8888988
Q ss_pred Ee--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeee
Q 009993 282 LA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA 358 (520)
Q Consensus 282 ~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~ 358 (520)
+. ++++++++++ |+.|++||+++++.+..+. +|...|.+++|+|++ ++++++.||.|++||++++ ..+.
T Consensus 253 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~------~~~~ 324 (425)
T 1r5m_A 253 LEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY-GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN------TLLA 324 (425)
T ss_dssp EEEETTTTEEEEEETTSCEEEECSSSBSCSEEEC-CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT------EEEE
T ss_pred EEECCCCCEEEEEcCCCEEEEEECCCCccceEec-CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC------cEeE
Confidence 87 7889999999 9999999999999888886 599999999999999 9999999999999999988 6788
Q ss_pred eecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeee-eecCCCcccccCcce--eeEEEEecC
Q 009993 359 TWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRV-IEVEPPQRMLHGFEC--NLLSVDIGA 433 (520)
Q Consensus 359 ~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~v~~~~~~~ 433 (520)
.+..|...|.+++|+| ++|++++.||.|++||+.+................ .........+.+|.. .|.++.+++
T Consensus 325 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 404 (425)
T 1r5m_A 325 LSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC 404 (425)
T ss_dssp EEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECT
T ss_pred ecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC
Confidence 8889999999999976 69999999999999999876422111110000000 000123455666744 677777654
Q ss_pred --CEEEEecCCCeEEEEeCC
Q 009993 434 --DRIVCGGEEGIVRIWNFS 451 (520)
Q Consensus 434 --~~l~sg~~Dg~v~iwd~~ 451 (520)
.+|++++.||.|++|+++
T Consensus 405 ~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 405 AGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp TSSEEEEEESSSCCEEEECC
T ss_pred CCceEEEEecCceEEEEeec
Confidence 599999999999999986
No 50
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.7e-35 Score=283.24 Aligned_cols=270 Identities=17% Similarity=0.216 Sum_probs=227.3
Q ss_pred cCcchhhhhhhhhcCCCCCCC-CCCCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 009993 99 SDHHAWKEFYCERWGLPIASA-PLGAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED 173 (520)
Q Consensus 99 ~~~~lW~~~~~~~~~~~~~~~-~~~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~ 173 (520)
..|. ..++|..|. |+... ...+.+...++|+ ...+.+..|...|.+++|+|+|.+|++|+.|+.+++|++..
T Consensus 61 ~gH~--~~V~~~~~s-~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~ 137 (354)
T 2pbi_B 61 KGHG--NKVLCMDWC-KDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTF 137 (354)
T ss_dssp ECCS--SCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCC
T ss_pred cCCC--CeEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEec
Confidence 3444 446788887 44433 3334455568998 34566788999999999999999999999999999999865
Q ss_pred C------cEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE
Q 009993 174 G------FSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL 245 (520)
Q Consensus 174 ~------~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 245 (520)
. .....+.+|...|.++. +++..|++|+.||+|++||+.++. ....+.+|...|.++++
T Consensus 138 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~-------------~~~~~~~h~~~v~~~~~ 204 (354)
T 2pbi_B 138 DKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ-------------LLQSFHGHGADVLCLDL 204 (354)
T ss_dssp CTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-------------EEEEEECCSSCEEEEEE
T ss_pred cccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe-------------EEEEEcCCCCCeEEEEE
Confidence 4 23455667888777665 889999999999999999997763 45677899999999998
Q ss_pred ----cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeec-ccc
Q 009993 246 ----DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG-AHV 316 (520)
Q Consensus 246 ----~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~-~~~ 316 (520)
++++|++|+.||+|++||+++++++..+. |...|.++. |++.++++++ |++|++||+++++.+..+.. .+.
T Consensus 205 ~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~ 284 (354)
T 2pbi_B 205 APSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESII 284 (354)
T ss_dssp CCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCC
T ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcc
Confidence 35799999999999999999999998887 899999988 7899999999 99999999999887776642 234
Q ss_pred cceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEe
Q 009993 317 GNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLID 390 (520)
Q Consensus 317 ~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd 390 (520)
..+.+++|+|++.+|++|+.|+.|++||+.++ ..+..+.+|.+.|++++|+| .+|++|+.||+|++|+
T Consensus 285 ~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~------~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 285 FGASSVDFSLSGRLLFAGYNDYTINVWDVLKG------SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTC------SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred cceeEEEEeCCCCEEEEEECCCcEEEEECCCC------ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 57899999999999999999999999999888 66788899999999999976 6999999999999996
No 51
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.9e-35 Score=314.45 Aligned_cols=281 Identities=18% Similarity=0.243 Sum_probs=240.5
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV 212 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~ 212 (520)
.+.+.+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+.+|...|.++. |++++|++|+.||.|++||+.
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 85 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 567899999999999999999999999999999999999999999999998887765 999999999999999999997
Q ss_pred cCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCC-cEEEEee-eccCEEEEe--e-C
Q 009993 213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALL-KCLKVLR-HSDWVYGLA--P-H 285 (520)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~-~~~~v~~~~--~-~ 285 (520)
++. ....+.+|.+.|++++| ++.+|++++.||+|++||+.++ .....+. |...|.++. | +
T Consensus 86 ~~~-------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 152 (814)
T 3mkq_A 86 TGE-------------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152 (814)
T ss_dssp TCC-------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTE
T ss_pred CCc-------------EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCC
Confidence 763 55667789999999999 6789999999999999999987 5556665 888999888 5 6
Q ss_pred CCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecC--CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecC
Q 009993 286 DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH--TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP 362 (520)
Q Consensus 286 ~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 362 (520)
+..+++++ |+.|++||+.++.....+...+...+.+++|+| ++.++++|+.||.|++||+.++ ..+..+.+
T Consensus 153 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~------~~~~~~~~ 226 (814)
T 3mkq_A 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK------SCVATLEG 226 (814)
T ss_dssp EEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT------EEEEEEEC
T ss_pred CCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC------cEEEEEcC
Confidence 77888888 999999999999888888766668999999999 9999999999999999999988 67888889
Q ss_pred CcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC---EEE
Q 009993 363 HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD---RIV 437 (520)
Q Consensus 363 h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~ 437 (520)
|...|++++|+| ++|++++.||.|++||+.++ .....+..+...+.++.++++ .++
T Consensus 227 ~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~ 287 (814)
T 3mkq_A 227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY-------------------KVEKTLNVGLERSWCIATHPTGRKNYI 287 (814)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-------------------SEEEEECCSSSSEEEEEECTTCGGGEE
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------------------cEEEEeecCCCcEEEEEEccCCCceEE
Confidence 999999999977 68999999999999999873 223334455566777766554 234
Q ss_pred EecCCCeEEEEeCCch
Q 009993 438 CGGEEGIVRIWNFSQA 453 (520)
Q Consensus 438 sg~~Dg~v~iwd~~~~ 453 (520)
+++.|+.+.+|++..+
T Consensus 288 ~~~~~~~~~~~~~~~~ 303 (814)
T 3mkq_A 288 ASGFDNGFTVLSLGND 303 (814)
T ss_dssp EEEETTEEEEEECSCC
T ss_pred EEEeCCCEEEEEcCCC
Confidence 4455677899987654
No 52
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.6e-34 Score=270.47 Aligned_cols=246 Identities=15% Similarity=0.132 Sum_probs=201.2
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCC--CcEEEEeCCCCceEEEEe--c--CCCEEEEEeCCCcEEE
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED--GFSIASSKPLGCTIRAVA--A--DKKLLVAGGTDGFIHC 208 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~--~~~~~~~~~~~~~v~~~~--~--~~~~l~sg~~dg~i~v 208 (520)
+..+.+|.+.|++++|+|+|++|++|+.|++|+|||+.+ ++.+.++.+|...|.++. + ++++|++|+.||+|++
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 346789999999999999999999999999999999974 367788999999998886 3 3789999999999999
Q ss_pred EEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc----CCEEEEEecCCeEEEEECCCCcE--EEEee-eccCEEE
Q 009993 209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD----LTRIYSGSWDMTVRVWDRALLKC--LKVLR-HSDWVYG 281 (520)
Q Consensus 209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~v~iwd~~~~~~--~~~~~-~~~~v~~ 281 (520)
||+.++. ......+.+|...|.+++|. +.+|++|+.|++|++||++++.. ...+. |...|.+
T Consensus 82 Wd~~~~~-----------~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~ 150 (297)
T 2pm7_B 82 WKEENGR-----------WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS 150 (297)
T ss_dssp EEBSSSC-----------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEE
T ss_pred EEcCCCc-----------eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccce
Confidence 9997652 12445677899999999993 67999999999999999987632 23333 8888988
Q ss_pred Ee--eC-------------CCEEEEEc-CCeEEEEECCCCe----eeEEeecccccceEEEEecCCC---CEEEEEeCCC
Q 009993 282 LA--PH-------------DTTVASTS-GSDVYIWDTNSGC----LLTVVNGAHVGNTKSLARSHTG---DFLFTGGEDG 338 (520)
Q Consensus 282 ~~--~~-------------~~~l~~~~-d~~i~iwd~~~~~----~~~~~~~~~~~~i~~l~~s~~~---~~l~tg~~dg 338 (520)
+. |+ +++|++++ |+.|++||++++. ....+. +|...|.+++|+|++ .+|++|+.|+
T Consensus 151 ~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-~H~~~V~~v~~sp~~~~~~~las~s~D~ 229 (297)
T 2pm7_B 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYMASVSQDR 229 (297)
T ss_dssp EEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred EeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec-CCCCceEEEEECCCCCCceEEEEEECCC
Confidence 87 43 46899988 9999999998765 445555 799999999999985 8999999999
Q ss_pred eEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993 339 AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 393 (520)
+|++||++....... ........|...|.+++|+| ++|++++.||.|++|+...
T Consensus 230 ~v~iWd~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 230 TCIIWTQDNEQGPWK-KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CEEEEEESSTTSCCE-EEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred cEEEEEeCCCCCccc-eeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 999999987521110 11111256888999999976 6999999999999999763
No 53
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=9.4e-35 Score=279.56 Aligned_cols=278 Identities=19% Similarity=0.250 Sum_probs=221.7
Q ss_pred hhhhhcCCCCCCCCC-CCCCCCcccHHHh-------hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC--cE
Q 009993 107 FYCERWGLPIASAPL-GAGFSDDKSWKEL-------IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG--FS 176 (520)
Q Consensus 107 ~~~~~~~~~~~~~~~-~~~~~~~~~W~~~-------~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~--~~ 176 (520)
+++..|+ |+...+. .+.+...++|+.. .....+|.+.|.+++|+|++++|++|+.|++|++|++.++ +.
T Consensus 19 v~~l~~s-p~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~ 97 (345)
T 3fm0_A 19 CWFLAWN-PAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFEC 97 (345)
T ss_dssp EEEEEEC-TTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEE
T ss_pred EEEEEEC-CCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEE
Confidence 3456676 5554443 3446667999721 1224799999999999999999999999999999999876 45
Q ss_pred EEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEE
Q 009993 177 IASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYS 252 (520)
Q Consensus 177 ~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s 252 (520)
+..+.+|...|.++. |++++|++|+.|++|++||+.++.. ......+.+|...|.+++| ++.+|++
T Consensus 98 ~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~----------~~~~~~~~~h~~~v~~~~~~p~~~~l~s 167 (345)
T 3fm0_A 98 VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE----------YECVSVLNSHTQDVKHVVWHPSQELLAS 167 (345)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC----------EEEEEEECCCCSCEEEEEECSSSSCEEE
T ss_pred EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC----------eEEEEEecCcCCCeEEEEECCCCCEEEE
Confidence 778899999888766 8999999999999999999876521 2345567889999999999 6789999
Q ss_pred EecCCeEEEEECCCCcE--EEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCC---------------eeeEEe
Q 009993 253 GSWDMTVRVWDRALLKC--LKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSG---------------CLLTVV 311 (520)
Q Consensus 253 ~s~dg~v~iwd~~~~~~--~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~---------------~~~~~~ 311 (520)
|+.|++|++||.++++. ...+. |...|.+++ |++++|++++ |++|++||.... .++..+
T Consensus 168 ~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T 3fm0_A 168 ASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL 247 (345)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEE
T ss_pred EeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEe
Confidence 99999999999988754 34454 889999987 8899999999 999999996321 234445
Q ss_pred ecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcccccee---eeeeecCCcCCEEEEEecC---CEEEEEeCCCc
Q 009993 312 NGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVL---LVATWIPHTGPVNSLAFEF---PWLVSAAGDGK 385 (520)
Q Consensus 312 ~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~---~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~ 385 (520)
...|...|++++|+|++..|++++.|+.|++|+........... ......+|...|++++|+| .+|++|+.||+
T Consensus 248 ~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~ 327 (345)
T 3fm0_A 248 SGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGE 327 (345)
T ss_dssp CSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred cCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCc
Confidence 44588899999999999999999999999999987653222111 1233468999999999987 48999999999
Q ss_pred EEEEeCCccc
Q 009993 386 LSLIDVRKLL 395 (520)
Q Consensus 386 i~vwd~~~~~ 395 (520)
|++|++.+..
T Consensus 328 v~~W~~~~~~ 337 (345)
T 3fm0_A 328 VAFWKYQRPE 337 (345)
T ss_dssp EEEEEECC--
T ss_pred EEEEEecCCC
Confidence 9999998754
No 54
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.5e-34 Score=278.51 Aligned_cols=287 Identities=13% Similarity=0.090 Sum_probs=223.2
Q ss_pred ccEEEEEEccCCCEEEEEeCCC-------eEEEEECCCCcE----------EEEeCCCCceEEEEecCCCEEEEEe----
Q 009993 143 EAVLTVFVLASAKLLFTSGYDS-------IVRMWHLEDGFS----------IASSKPLGCTIRAVAADKKLLVAGG---- 201 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~sgs~dg-------~v~vwd~~~~~~----------~~~~~~~~~~v~~~~~~~~~l~sg~---- 201 (520)
-+|++++|+||+++|++|+.|. .|++|++..+.. ...+.+|...+.+++++++.+++|.
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~ 94 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENS 94 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCH
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCc
Confidence 4799999999999999998644 599999876532 1245678888999999999888874
Q ss_pred -------CCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEE--EecCCeEEEEECCCCcEE
Q 009993 202 -------TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYS--GSWDMTVRVWDRALLKCL 270 (520)
Q Consensus 202 -------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s--~s~dg~v~iwd~~~~~~~ 270 (520)
.|+.+++|++.+.......... ........+...+.+++| ||+++++ ++.|++|++||+++++++
T Consensus 95 ~~l~s~~~d~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~ 170 (365)
T 4h5i_A 95 TKITQGKGNKHLRKFKYDKVNDQLEFLTS----VDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEK 170 (365)
T ss_dssp HHHHHTSCCCCEEEEEEETTTTEEEEEEE----ECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEE
T ss_pred cEEEEecCCCcEEEEEecCCCceEEEeee----eceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEE
Confidence 4678999998765432211100 001112245567889999 7787664 457899999999999999
Q ss_pred EEeeeccCEEEEe--eCCCEEEEEcCCeEEEEECCCCeeeEE-eecccccceEEEEecCCCCEEEEEeCCC----eEEEE
Q 009993 271 KVLRHSDWVYGLA--PHDTTVASTSGSDVYIWDTNSGCLLTV-VNGAHVGNTKSLARSHTGDFLFTGGEDG----AIHMY 343 (520)
Q Consensus 271 ~~~~~~~~v~~~~--~~~~~l~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~i~~l~~s~~~~~l~tg~~dg----~i~iw 343 (520)
..+.|...|.+++ |+++++++++++.+.+|+..++..+.. ...+|...|.+++|+|++.++++++.|+ .+++|
T Consensus 171 ~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~ 250 (365)
T 4h5i_A 171 FEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI 250 (365)
T ss_dssp EEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred EEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence 9999888999887 899999999988888888888776543 3346888999999999999999999887 68888
Q ss_pred EcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccC
Q 009993 344 EIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG 421 (520)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (520)
++..... .......+.+|..+|++++|+| ++|++|+.|++|+|||++++. .....+.+
T Consensus 251 ~~~~~~~--~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~------------------~~~~~~~g 310 (365)
T 4h5i_A 251 SIKSGNT--SVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLS------------------MSKIFKQA 310 (365)
T ss_dssp EEETTEE--EEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTE------------------EEEEETTS
T ss_pred cccccee--cceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCc------------------EEEEecCc
Confidence 8876631 1133556788999999999977 699999999999999998742 12223578
Q ss_pred cceeeEEEEecCC--EEEEecCCCeEEEEeCCch
Q 009993 422 FECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQA 453 (520)
Q Consensus 422 ~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~~ 453 (520)
|...|.+++|+++ +|||||.|++|||||+...
T Consensus 311 H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 311 HSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp SSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 8888888877654 9999999999999999754
No 55
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7.3e-35 Score=327.12 Aligned_cols=327 Identities=18% Similarity=0.238 Sum_probs=266.9
Q ss_pred CCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--c--CCC
Q 009993 124 GFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--A--DKK 195 (520)
Q Consensus 124 ~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~--~~~ 195 (520)
.+...++|+ +.+.++.+|.+.|++++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.++. + ++.
T Consensus 635 ~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 714 (1249)
T 3sfz_A 635 ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHL 714 (1249)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCC
T ss_pred CCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCce
Confidence 345568898 45778899999999999999999999999999999999999999999999999888876 5 566
Q ss_pred EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEe
Q 009993 196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL 273 (520)
Q Consensus 196 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 273 (520)
.+++|+.||.|++||+.++. ....+.+|.+.|.+++| +++++++++.||+|++||+.+++....+
T Consensus 715 ~l~sg~~d~~v~vwd~~~~~-------------~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 781 (1249)
T 3sfz_A 715 LLATGSNDFFLKLWDLNQKE-------------CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSI 781 (1249)
T ss_dssp EEEEEETTSCEEEEETTSSS-------------EEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCcc-------------hhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCccccee
Confidence 89999999999999997763 55677899999999999 7789999999999999999877654443
Q ss_pred e--------------------------------------------------------eccCEEEEe--eCCCEEEEEc-C
Q 009993 274 R--------------------------------------------------------HSDWVYGLA--PHDTTVASTS-G 294 (520)
Q Consensus 274 ~--------------------------------------------------------~~~~v~~~~--~~~~~l~~~~-d 294 (520)
. |...|.++. +++.++++++ +
T Consensus 782 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d 861 (1249)
T 3sfz_A 782 NVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ 861 (1249)
T ss_dssp ECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSS
T ss_pred cccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCC
Confidence 2 334455544 7889999998 8
Q ss_pred CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccc-----------------------
Q 009993 295 SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE----------------------- 351 (520)
Q Consensus 295 ~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~----------------------- 351 (520)
+.|++||+.++..+..+. +|...|.+++|+|++.++++++.||.|++||+......
T Consensus 862 g~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 940 (1249)
T 3sfz_A 862 YCVELWNIDSRLKVADCR-GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAV 940 (1249)
T ss_dssp SCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEE
T ss_pred CeEEEEEcCCCceeeecC-CCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEe
Confidence 999999999999988887 69999999999999999999999999999997531000
Q ss_pred --------------------------------------------------cceeeeeeecCCcCCEEEEEecC--CEEEE
Q 009993 352 --------------------------------------------------ANVLLVATWIPHTGPVNSLAFEF--PWLVS 379 (520)
Q Consensus 352 --------------------------------------------------~~~~~~~~~~~h~~~v~~l~~~~--~~l~s 379 (520)
........+.+|...|++++|+| ++|++
T Consensus 941 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 1020 (1249)
T 3sfz_A 941 DNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLIS 1020 (1249)
T ss_dssp ESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEE
T ss_pred cCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEE
Confidence 00123345567999999999976 69999
Q ss_pred EeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC-EEEEecCCCeEEEEeCCchHhHHH
Q 009993 380 AAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEIER 458 (520)
Q Consensus 380 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~~~~ 458 (520)
++.||.|++||+.++... ...+|...+.++.+.++ .+++++.||.|++||+.++..+..
T Consensus 1021 ~~~dg~i~vwd~~~~~~~--------------------~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~ 1080 (1249)
T 3sfz_A 1021 SSEDSVIQVWNWQTGDYV--------------------FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERD 1080 (1249)
T ss_dssp ECSSSBEEEEETTTTEEE--------------------CCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEE
T ss_pred EcCCCEEEEEECCCCceE--------------------EEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEE
Confidence 999999999999874221 13466777888887766 899999999999999988754322
Q ss_pred HhhhhcccccchhhhhccceeeeccCCCcccccccc
Q 009993 459 RARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVA 494 (520)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~ 494 (520)
.......+..++|+|||+.+++++.+
T Consensus 1081 ----------~~~~~~~v~~~~~s~d~~~l~s~s~d 1106 (1249)
T 3sfz_A 1081 ----------FTCHQGTVLSCAISSDATKFSSTSAD 1106 (1249)
T ss_dssp ----------EECCSSCCCCEEECSSSSSCEEECCS
T ss_pred ----------EcccCCcEEEEEECCCCCEEEEEcCC
Confidence 12234457899999999999988753
No 56
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.6e-34 Score=274.28 Aligned_cols=305 Identities=18% Similarity=0.256 Sum_probs=243.7
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccee
Q 009993 141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHL 218 (520)
Q Consensus 141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~ 218 (520)
|.++|.+++|+|+|++++++..++.+.+|............+|...|.++. ++++++++++ ||.|++||+.++...
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~- 85 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK- 85 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC-
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce-
Confidence 567899999999999999998888777776665555555557887776665 8999999999 999999999775310
Q ss_pred eeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCc--EEEEee-eccCEEEEe--eCCCEEEE
Q 009993 219 FDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLK--CLKVLR-HSDWVYGLA--PHDTTVAS 291 (520)
Q Consensus 219 ~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~-~~~~v~~~~--~~~~~l~~ 291 (520)
.........+|...|.+++| +++++++++.||.|++||+.+++ ....+. |...|.++. ++++++++
T Consensus 86 -------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 158 (337)
T 1gxr_A 86 -------SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFS 158 (337)
T ss_dssp -------SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred -------eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEE
Confidence 11122223379999999999 67899999999999999999887 444444 778888877 78899999
Q ss_pred Ec-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEE
Q 009993 292 TS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL 370 (520)
Q Consensus 292 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l 370 (520)
++ |+.|++||+++++.+..+. +|...+.+++|+|++++|++++.||.|++||++++ ..+..+ .|...+.++
T Consensus 159 ~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~------~~~~~~-~~~~~v~~~ 230 (337)
T 1gxr_A 159 CCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG------RQLQQH-DFTSQIFSL 230 (337)
T ss_dssp EETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT------EEEEEE-ECSSCEEEE
T ss_pred EeCCCcEEEEeCCCCceeeeee-cccCceEEEEECCCCCEEEEEecCCcEEEEECCCC------ceEeee-cCCCceEEE
Confidence 88 8999999999999988887 59999999999999999999999999999999988 444444 477899999
Q ss_pred EecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEec--CCEEEEecCCCeEE
Q 009993 371 AFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVCGGEEGIVR 446 (520)
Q Consensus 371 ~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~Dg~v~ 446 (520)
+|+| ++|++++.||.|++||+++.. ...+..|...+.++.++ +++|++++.||.|+
T Consensus 231 ~~s~~~~~l~~~~~~~~i~~~~~~~~~--------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 290 (337)
T 1gxr_A 231 GYCPTGEWLAVGMESSNVEVLHVNKPD--------------------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLN 290 (337)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTSSC--------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCC--------------------eEEEcCCccceeEEEECCCCCEEEEecCCCcEE
Confidence 9976 699999999999999998742 11234566667666665 55999999999999
Q ss_pred EEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCccccccc
Q 009993 447 IWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSV 493 (520)
Q Consensus 447 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~ 493 (520)
+||+.++..+.. ......+..++|+|+|+.+++++.
T Consensus 291 ~~~~~~~~~~~~-----------~~~~~~v~~~~~s~~~~~l~~~~~ 326 (337)
T 1gxr_A 291 AWRTPYGASIFQ-----------SKESSSVLSCDISVDDKYIVTGSG 326 (337)
T ss_dssp EEETTTCCEEEE-----------EECSSCEEEEEECTTSCEEEEEET
T ss_pred EEECCCCeEEEE-----------ecCCCcEEEEEECCCCCEEEEecC
Confidence 999988754411 112345788999999999988774
No 57
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-34 Score=272.91 Aligned_cols=298 Identities=18% Similarity=0.179 Sum_probs=218.2
Q ss_pred CCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEe-cc-CCCCeEEEEE--cCC
Q 009993 173 DGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL-WE-HEGPITSLAL--DLT 248 (520)
Q Consensus 173 ~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~l~~--~~~ 248 (520)
+.+.+..+.+|...|.++..++.+|++|+.|++|++||+.++.. .....+ .+ |...|.+++| +++
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~-----------~~~~~~~~~~h~~~v~~v~~sp~~~ 71 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDF-----------TLIDVLDETAHKKAIRSVAWRPHTS 71 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCC-----------EEEEEECTTCCCSCEEEEEECTTSS
T ss_pred ccccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCe-----------EEEEEEecCCccCCEEEEEECCCCC
Confidence 45677888999999999986666999999999999999876421 122233 34 9999999999 678
Q ss_pred EEEEEecCCeEEEEECCC-------CcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCC----eeeEEeec
Q 009993 249 RIYSGSWDMTVRVWDRAL-------LKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSG----CLLTVVNG 313 (520)
Q Consensus 249 ~l~s~s~dg~v~iwd~~~-------~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~----~~~~~~~~ 313 (520)
+|++|+.|++|++||+.. .+.+..+. |...|.++. |++++|++++ |++|++||++.. +.+..+.
T Consensus 72 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~- 150 (330)
T 2hes_X 72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ- 150 (330)
T ss_dssp EEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC-
T ss_pred EEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec-
Confidence 999999999999999853 34555555 899999987 8899999999 999999999532 4555565
Q ss_pred ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCC----EEEEEeCCCcEEEE
Q 009993 314 AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP----WLVSAAGDGKLSLI 389 (520)
Q Consensus 314 ~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~l~s~s~dg~i~vw 389 (520)
+|...|.+++|+|++.+|++|+.|++|++||...+.. .++..+.+|.+.|.+++|+|. +|++|+.|++|++|
T Consensus 151 ~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw 226 (330)
T 2hes_X 151 EHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW----ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226 (330)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE----EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe----eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEE
Confidence 6999999999999999999999999999999876521 467788999999999999763 79999999999999
Q ss_pred eCCcccccCCCCCCCceeeeeecCCCccccc-CcceeeEEEEecCC-EEEEecCCCeEEEEeCCchHhHHHHhhhhcccc
Q 009993 390 DVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH-GFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEIERRARALRGIR 467 (520)
Q Consensus 390 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~ 467 (520)
|+....... .. . ......+. .|...|.++.+++. +|++++.||.|++|+..++... .. ..
T Consensus 227 ~~~~~~~~~-----~~--~----~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~-----~~--~~ 288 (330)
T 2hes_X 227 KYMGDDEDD-----QQ--E----WVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWK-----VF--AK 288 (330)
T ss_dssp EEEEECTTS-----CE--E----EEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEE-----EE--EE
T ss_pred EecCCCccc-----cc--e----eEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceE-----EE--ec
Confidence 997642110 00 0 01111223 37788888888755 8999999999999998654210 00 00
Q ss_pred cchhhhh-ccceeeecc--CCCcccccccccccCCCCCCcceeeeccc
Q 009993 468 LENRMRR-RKLQTEMSS--KGGRTDQCSVAAKKNPMNGNRRSVWHNKR 512 (520)
Q Consensus 468 ~~~~~~~-~~~~~~~s~--~g~~~~~~s~~~~~~~~~~~~~~~~~~~~ 512 (520)
....+.. .+..++|+| +|..+++++.+. +..+|....
T Consensus 289 ~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg--------~v~~W~~~~ 328 (330)
T 2hes_X 289 RALCHGVYEINVVKWLELNGKTILATGGDDG--------IVNFWSLEK 328 (330)
T ss_dssp ESCTTTTSCEEEEEEC-----CCEEEEETTS--------EEEEEEC--
T ss_pred cccccccceEEEEEEecCCCceEEEEecCCC--------cEEEEEecc
Confidence 0111222 467889999 688888887532 247887643
No 58
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-35 Score=296.25 Aligned_cols=304 Identities=11% Similarity=0.104 Sum_probs=217.6
Q ss_pred ccccEEEEEEccCC---------CEEEE-------------------EeCCCeEEEEECCCCcEE----EEeCCCCceEE
Q 009993 141 HTEAVLTVFVLASA---------KLLFT-------------------SGYDSIVRMWHLEDGFSI----ASSKPLGCTIR 188 (520)
Q Consensus 141 h~~~V~~l~~~~~~---------~~l~s-------------------gs~dg~v~vwd~~~~~~~----~~~~~~~~~v~ 188 (520)
+.+.|.+|+|+|++ ++||+ ++.|++|+|||+.+++.. ..+..|...|.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 46677777777765 45554 668899999999877642 33555666676
Q ss_pred EEe--cC------CCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeE
Q 009993 189 AVA--AD------KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTV 259 (520)
Q Consensus 189 ~~~--~~------~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v 259 (520)
++. |+ +.+|++|+.||+|++||+.++....... .........+.+|...|++++| .++.|++|+.||+|
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~--~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV 289 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF--KMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFV 289 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE--ECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc--eeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEE
Confidence 654 64 5799999999999999997653210000 0011234567889999999999 55799999999999
Q ss_pred EEEECCCCc-EEEEee-eccCEEEE--e--eCC-CEEEEEc-CCeEEEEECCCCeeeEEeeccccc--ceEEEEecCCCC
Q 009993 260 RVWDRALLK-CLKVLR-HSDWVYGL--A--PHD-TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVG--NTKSLARSHTGD 329 (520)
Q Consensus 260 ~iwd~~~~~-~~~~~~-~~~~v~~~--~--~~~-~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~--~i~~l~~s~~~~ 329 (520)
++||++++. ....+. |...|.++ . +++ .+|++++ |++|++||+++++.+..+. +|.. .|.+++|+|++.
T Consensus 290 ~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~-~~~~~~~v~~v~fsp~~~ 368 (524)
T 2j04_B 290 AEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV-SRFRGSNLVPVVYCPQIY 368 (524)
T ss_dssp EEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE-EECSCCSCCCEEEETTTT
T ss_pred EEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc-cccccCcccceEeCCCcC
Confidence 999999764 344454 89999998 3 456 7899999 9999999999988776665 3543 588999999999
Q ss_pred EEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccC-C-------
Q 009993 330 FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSG-R------- 399 (520)
Q Consensus 330 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~-~------- 399 (520)
.+++++.|++|++||++++ .++.++.+|.+.|++|+|+| ++|++|+.||+|++||+....... .
T Consensus 369 ~l~s~~~d~tv~lwd~~~~------~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~ 442 (524)
T 2j04_B 369 SYIYSDGASSLRAVPSRAA------FAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQK 442 (524)
T ss_dssp EEEEECSSSEEEEEETTCT------TCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CC
T ss_pred eEEEeCCCCcEEEEECccc------ccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCcccee
Confidence 9999999999999999988 56677889999999999987 689999999999999986532111 0
Q ss_pred ------CCCCC--ceeeeee---c------CCCcccccCcceeeEEEEecCC-----EEEEecCCCeEEEEeCCch
Q 009993 400 ------PTSGK--RVSRVIE---V------EPPQRMLHGFECNLLSVDIGAD-----RIVCGGEEGIVRIWNFSQA 453 (520)
Q Consensus 400 ------~~~~~--~~~~~~~---~------~~~~~~~~~~~~~v~~~~~~~~-----~l~sg~~Dg~v~iwd~~~~ 453 (520)
..... ....+.. + ......+.+|...|.+++|+++ .+++|+.||.|+||++.-+
T Consensus 443 ~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 443 SLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred eeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 00000 0000000 0 2234456788888888888776 8999999999999998743
No 59
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.6e-33 Score=282.72 Aligned_cols=295 Identities=21% Similarity=0.307 Sum_probs=237.8
Q ss_pred CCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe----cCCC
Q 009993 124 GFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA----ADKK 195 (520)
Q Consensus 124 ~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~----~~~~ 195 (520)
.+...++|+ +.+..+.+|.+.|++++|+|++ +|++|+.||+|++||+.+++.+..+.+|...|.++. +++.
T Consensus 140 ~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 218 (464)
T 3v7d_B 140 DDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK 218 (464)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCE
T ss_pred CCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCC
Confidence 345568898 5577889999999999999988 999999999999999999999999999999988775 4678
Q ss_pred EEEEEeCCCcEEEEEcccCcceeeec----------cCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECC
Q 009993 196 LLVAGGTDGFIHCWRAVEVLPHLFDI----------SGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRA 265 (520)
Q Consensus 196 ~l~sg~~dg~i~vwd~~~~~~~~~~~----------~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~ 265 (520)
++++|+.||.|++||+.++....... ...........+.+|...|.++..+++++++|+.||+|++||++
T Consensus 219 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~ 298 (464)
T 3v7d_B 219 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVA 298 (464)
T ss_dssp EEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred EEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 99999999999999998764221100 00011123557789999999999999999999999999999999
Q ss_pred CCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEE
Q 009993 266 LLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIH 341 (520)
Q Consensus 266 ~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~ 341 (520)
+++++..+. |...|.++. ++++.+++++ |+.|++||+++++.+..+. +|...|.+++|+ +.+|++|+.||.|+
T Consensus 299 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~s~dg~v~ 375 (464)
T 3v7d_B 299 QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ-GHTALVGLLRLS--DKFLVSAAADGSIR 375 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEC--SSEEEEEETTSEEE
T ss_pred CCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCcEEEEEEc--CCEEEEEeCCCcEE
Confidence 999998887 889998887 7889999999 9999999999999999987 699999999997 58999999999999
Q ss_pred EEEcccCccccceeeeeeecCCcCCEEEEEe--cCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccc
Q 009993 342 MYEIINDCTEANVLLVATWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML 419 (520)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (520)
+||+.+.. ..... .|...+..++| ++.++++|+ ||.|++||++++... ....
T Consensus 376 vwd~~~~~------~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~------------------~~~~ 429 (464)
T 3v7d_B 376 GWDANDYS------RKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV------------------HANI 429 (464)
T ss_dssp EEETTTCC------EEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEE------------------ESCT
T ss_pred EEECCCCc------eeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEE------------------ehhh
Confidence 99998873 22222 24444555555 567888888 899999999985221 1224
Q ss_pred cCcceeeEEEEecCC-EEEEecCCCeEEEE
Q 009993 420 HGFECNLLSVDIGAD-RIVCGGEEGIVRIW 448 (520)
Q Consensus 420 ~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iw 448 (520)
.+|...|.++.++++ .+++++.||.+.+|
T Consensus 430 ~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 430 LKDADQIWSVNFKGKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp TTTCSEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred ccCCCcEEEEEecCCEEEEEEEeCCeEEEE
Confidence 567788999999988 45555667765554
No 60
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.1e-34 Score=281.34 Aligned_cols=286 Identities=15% Similarity=0.194 Sum_probs=228.2
Q ss_pred hhhccccccEEEEEEccC----CCEEEEEeCCCeEEEEECCCCcEEEEeCC-----CCceEEEE--ecC----CCEEEEE
Q 009993 136 DVLYGHTEAVLTVFVLAS----AKLLFTSGYDSIVRMWHLEDGFSIASSKP-----LGCTIRAV--AAD----KKLLVAG 200 (520)
Q Consensus 136 ~~l~~h~~~V~~l~~~~~----~~~l~sgs~dg~v~vwd~~~~~~~~~~~~-----~~~~v~~~--~~~----~~~l~sg 200 (520)
....+|.+.|++++|+|+ ...+++++.++.|++||+.+++.+..+.. |...|.++ +++ +.+|++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 345699999999999984 45677777778999999998877766643 44556655 466 6699999
Q ss_pred eCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCcEEEEe----
Q 009993 201 GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVL---- 273 (520)
Q Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~---- 273 (520)
+.||.|++||+.++. ....+.+|...|.+++| ++.+|++|+.||+|++||+++++.+..+
T Consensus 92 ~~dg~i~v~d~~~~~-------------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 158 (366)
T 3k26_A 92 GSRGIIRIINPITMQ-------------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE 158 (366)
T ss_dssp ETTCEEEEECTTTCC-------------EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTT
T ss_pred cCCCEEEEEEchhce-------------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccc
Confidence 999999999987653 45567789999999999 4589999999999999999999999887
Q ss_pred eeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEee---------------------------cccccceEEEE
Q 009993 274 RHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVN---------------------------GAHVGNTKSLA 323 (520)
Q Consensus 274 ~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~---------------------------~~~~~~i~~l~ 323 (520)
.|...|.++. +++.++++++ |+.|++||+++++....+. .+|...|.+++
T Consensus 159 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (366)
T 3k26_A 159 GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVR 238 (366)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEE
T ss_pred cccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEE
Confidence 3889999988 7889999998 9999999999876543222 13889999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEEcccCccc--------cceeeeeeecCCcCCEEEEEec----CCEEEEEeCCCcEEEEeC
Q 009993 324 RSHTGDFLFTGGEDGAIHMYEIINDCTE--------ANVLLVATWIPHTGPVNSLAFE----FPWLVSAAGDGKLSLIDV 391 (520)
Q Consensus 324 ~s~~~~~l~tg~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~vwd~ 391 (520)
|+ ++++++++.||.|++||+++.... .....+..+..|...|++++|+ +.+|++|+.||.|++||+
T Consensus 239 ~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~ 316 (366)
T 3k26_A 239 WL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDL 316 (366)
T ss_dssp EE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEEC
T ss_pred Ec--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEEC
Confidence 98 789999999999999999876421 1224477788899999999995 579999999999999999
Q ss_pred CcccccCCCCCCCceeeeeecCCCcccccCc--ceeeEEEEec--CCEEEEecCCCeEEEEeCC
Q 009993 392 RKLLRSGRPTSGKRVSRVIEVEPPQRMLHGF--ECNLLSVDIG--ADRIVCGGEEGIVRIWNFS 451 (520)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~ 451 (520)
.+.... ......+.+| ...|.++.++ +.+|++|+.||.|++||+.
T Consensus 317 ~~~~~~---------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 317 EVEDPH---------------KAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CSSSGG---------------GCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCCCCc---------------cccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 874221 1111233444 5667776665 4599999999999999985
No 61
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.3e-34 Score=279.88 Aligned_cols=283 Identities=19% Similarity=0.216 Sum_probs=223.9
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCC-CCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCc
Q 009993 139 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP-LGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVL 215 (520)
Q Consensus 139 ~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~ 215 (520)
.+|.+.+.+..+++++..+++++.|+.|++||+.+++....+.. |...|.++. +++.+|++|+.||.|++||+.++.
T Consensus 88 ~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 167 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT 167 (401)
T ss_dssp TTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred CCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe
Confidence 46766544433444456688899999999999999998877765 777777665 899999999999999999987653
Q ss_pred ceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECC-CCcEEEEee-eccCEEEEe--eCCCEEEE
Q 009993 216 PHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRA-LLKCLKVLR-HSDWVYGLA--PHDTTVAS 291 (520)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~-~~~~~~~~~-~~~~v~~~~--~~~~~l~~ 291 (520)
....+.+|...|.+++|+++.+++|+.||.|++||++ ....+..+. |...|.++. +++.++++
T Consensus 168 -------------~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 234 (401)
T 4aez_A 168 -------------KLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLAS 234 (401)
T ss_dssp -------------EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred -------------EEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEE
Confidence 5567779999999999999999999999999999998 455566665 899999887 78999999
Q ss_pred Ec-CCeEEEEECCCCeeeEEeecccccceEEEEecCCC-CEEEEEe--CCCeEEEEEcccCccccceeeeeeecCCcCCE
Q 009993 292 TS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG-DFLFTGG--EDGAIHMYEIINDCTEANVLLVATWIPHTGPV 367 (520)
Q Consensus 292 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~tg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v 367 (520)
++ |+.|++||+++++.+..+. +|...|.+++|+|++ .++++|+ .|+.|++||++++ ..+..+. +...|
T Consensus 235 ~~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~------~~~~~~~-~~~~v 306 (401)
T 4aez_A 235 GGNDNVVQIWDARSSIPKFTKT-NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG------ARVNTVD-AGSQV 306 (401)
T ss_dssp EETTSCEEEEETTCSSEEEEEC-CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC------CEEEEEE-CSSCE
T ss_pred EeCCCeEEEccCCCCCccEEec-CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC------CEEEEEe-CCCcE
Confidence 99 8999999999999888886 599999999999976 4666655 7999999999988 5555554 56789
Q ss_pred EEEEecC--CEEEEE--eCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEec--CCEEEEecC
Q 009993 368 NSLAFEF--PWLVSA--AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVCGGE 441 (520)
Q Consensus 368 ~~l~~~~--~~l~s~--s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~ 441 (520)
++++|+| .+++++ +.||.|++||+.+.... ....+.+|...|.++.++ +.+|++++.
T Consensus 307 ~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~-----------------~~~~~~~h~~~v~~~~~s~dg~~l~s~~~ 369 (401)
T 4aez_A 307 TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT-----------------KQVDIPAHDTRVLYSALSPDGRILSTAAS 369 (401)
T ss_dssp EEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE-----------------EEEEEECCSSCCCEEEECTTSSEEEEECT
T ss_pred EEEEECCCCCeEEEEeecCCCcEEEEecCCccce-----------------eEEEecCCCCCEEEEEECCCCCEEEEEeC
Confidence 9999976 678884 48999999999863211 111235666666666654 559999999
Q ss_pred CCeEEEEeCCchHhHHHH
Q 009993 442 EGIVRIWNFSQAFEIERR 459 (520)
Q Consensus 442 Dg~v~iwd~~~~~~~~~~ 459 (520)
||.|++|++.++..+.+.
T Consensus 370 dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 370 DENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp TSEEEEEECCC-------
T ss_pred CCcEEEEECCCCcccccc
Confidence 999999999998876654
No 62
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.4e-34 Score=274.55 Aligned_cols=281 Identities=12% Similarity=0.103 Sum_probs=229.4
Q ss_pred hhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc---EEEEeCCCCceEEEEe--cCCC-EEEEEeCCCcEEEEE
Q 009993 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF---SIASSKPLGCTIRAVA--ADKK-LLVAGGTDGFIHCWR 210 (520)
Q Consensus 137 ~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~---~~~~~~~~~~~v~~~~--~~~~-~l~sg~~dg~i~vwd 210 (520)
...+|.+.|++++|+|++++|++|+.|+.|++|++.++. ....+.+|...|.++. ++++ +|++|+.||.|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 456899999999999999999999999999999998877 3445557887777665 8999 999999999999999
Q ss_pred c-ccCcceeeeccCCccccceEEecc--CCCCeEEEEEc-CCEEEEEecCCeEEEEECCC---------CcEEEEeeecc
Q 009993 211 A-VEVLPHLFDISGSEKQNTQFRLWE--HEGPITSLALD-LTRIYSGSWDMTVRVWDRAL---------LKCLKVLRHSD 277 (520)
Q Consensus 211 ~-~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~-~~~l~s~s~dg~v~iwd~~~---------~~~~~~~~~~~ 277 (520)
+ .++ ....+.+ |...|.+++|. ++.+++++.|+.|++||+++ ++++..+.+..
T Consensus 86 ~~~~~--------------~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 151 (342)
T 1yfq_A 86 LIGSP--------------SFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKN 151 (342)
T ss_dssp SSSSS--------------SEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCC
T ss_pred eccCC--------------ceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCC
Confidence 8 765 2356667 99999999996 78999999999999999988 77777777889
Q ss_pred CEEEEeeCCCEEEEEc-CCeEEEEECCC-Cee-eEEeecccccceEEEEecC-CCCEEEEEeCCCeEEEEEcccCccccc
Q 009993 278 WVYGLAPHDTTVASTS-GSDVYIWDTNS-GCL-LTVVNGAHVGNTKSLARSH-TGDFLFTGGEDGAIHMYEIINDCTEAN 353 (520)
Q Consensus 278 ~v~~~~~~~~~l~~~~-d~~i~iwd~~~-~~~-~~~~~~~~~~~i~~l~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~~~ 353 (520)
.|.++...+..+++++ ++.|++||+++ +.. .......|...+.+++|+| +++++++|+.||.|++|+++.......
T Consensus 152 ~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 152 KIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp CEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred ceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence 9999996666688777 99999999998 543 3333346888999999999 999999999999999999987611100
Q ss_pred eeeeeeecCCcC---------CEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCc
Q 009993 354 VLLVATWIPHTG---------PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGF 422 (520)
Q Consensus 354 ~~~~~~~~~h~~---------~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (520)
......+..|.. .|++++|+| ++|++|+.||.|++||+.++. ....+.+|
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-------------------~~~~~~~~ 292 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK-------------------KIKNFAKF 292 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE-------------------EEEECCCC
T ss_pred cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh-------------------Hhhhhhcc
Confidence 134555666654 999999976 689999999999999998742 23335566
Q ss_pred -ceeeEEEEecCCEEEEecCCCe-EEEEeC
Q 009993 423 -ECNLLSVDIGADRIVCGGEEGI-VRIWNF 450 (520)
Q Consensus 423 -~~~v~~~~~~~~~l~sg~~Dg~-v~iwd~ 450 (520)
...|.++.+++.+|++|+.||. .+.|..
T Consensus 293 h~~~v~~~~~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 293 NEDSVVKIACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp SSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred cCCCceEecCCCCeEEEEecCCcccccccc
Confidence 7788888888889999999998 554443
No 63
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=8.4e-34 Score=269.12 Aligned_cols=266 Identities=21% Similarity=0.311 Sum_probs=223.9
Q ss_pred hhhhhhcCCCCCCCC-CCCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 009993 106 EFYCERWGLPIASAP-LGAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS 180 (520)
Q Consensus 106 ~~~~~~~~~~~~~~~-~~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~ 180 (520)
.+.+..|. |+.... ..+.+...++|+ +....+.+|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+
T Consensus 25 ~v~~~~~s-~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 103 (312)
T 4ery_A 25 AVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103 (312)
T ss_dssp CEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred cEEEEEEC-CCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEE
Confidence 34566676 444433 233455668887 456778999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecC
Q 009993 181 KPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD 256 (520)
Q Consensus 181 ~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d 256 (520)
.+|...|.++. +++++|++|+.||.|++||+.++. ....+..|..+|.+++| ++.++++++.|
T Consensus 104 ~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (312)
T 4ery_A 104 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170 (312)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-------------EEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-------------EEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 99998887765 899999999999999999997753 45667789999999999 67899999999
Q ss_pred CeEEEEECCCCcEEEEee--eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccce---EEEEecCCC
Q 009993 257 MTVRVWDRALLKCLKVLR--HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNT---KSLARSHTG 328 (520)
Q Consensus 257 g~v~iwd~~~~~~~~~~~--~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i---~~l~~s~~~ 328 (520)
|.|++||+++++.+..+. +...+..+. ++++++++++ |+.|++||+++++.+..+. +|.... ......+++
T Consensus 171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 249 (312)
T 4ery_A 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSVTGG 249 (312)
T ss_dssp SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC-SSCCSSSCCCEEEECSSS
T ss_pred CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE-ecCCceEEEEEEEEeCCC
Confidence 999999999998887764 556677665 8899999998 9999999999999988886 465433 223334678
Q ss_pred CEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEe--CCCcEEEEeCC
Q 009993 329 DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAA--GDGKLSLIDVR 392 (520)
Q Consensus 329 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s--~dg~i~vwd~~ 392 (520)
.+|++|+.||.|++||+.++ ..+..+.+|...|.+++|+| ++|++++ .|+.|++|+..
T Consensus 250 ~~l~sg~~dg~i~vwd~~~~------~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 250 KWIVSGSEDNLVYIWNLQTK------EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CEEEECCTTSCEEEEETTTC------CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred cEEEEECCCCEEEEEECCCc------hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 89999999999999999988 67888999999999999987 6888887 69999999864
No 64
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=278.66 Aligned_cols=287 Identities=17% Similarity=0.231 Sum_probs=221.8
Q ss_pred HhhhhhccccccEEEEEEcc-CCCEEEEEeCCCeEEEEECCCCcEEEEe-------------CCCCceEEEEe--c-CCC
Q 009993 133 ELIDVLYGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLEDGFSIASS-------------KPLGCTIRAVA--A-DKK 195 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~~-~~~~l~sgs~dg~v~vwd~~~~~~~~~~-------------~~~~~~v~~~~--~-~~~ 195 (520)
+....+.+|.+.|++++|+| ++++|++|+.||.|++||+.++.....+ .+|...|.++. + ++.
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence 34567889999999999999 9999999999999999999988655443 25888888776 6 778
Q ss_pred EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-----cCCEEEEEecCCeEEEEECCCCcEE
Q 009993 196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-----DLTRIYSGSWDMTVRVWDRALLKCL 270 (520)
Q Consensus 196 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-----~~~~l~s~s~dg~v~iwd~~~~~~~ 270 (520)
+|++++.||.|++||+.++. .. ....+...+.++.+ ++.++++++.|+.|++||+++++.+
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~-------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 179 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQ-------------TA-DVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS 179 (408)
T ss_dssp CEEEEETTSEEEEEETTTTE-------------EE-EEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC
T ss_pred EEEEEeCCCeEEEeeCCCCc-------------cc-eeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee
Confidence 99999999999999997753 22 22347788999998 3348999999999999999999988
Q ss_pred EEee-eccCEEEEe--eCCC-EEEEEc-CCeEEEEECCCCe-eeEEee--------------cccccceEEEEecCCCCE
Q 009993 271 KVLR-HSDWVYGLA--PHDT-TVASTS-GSDVYIWDTNSGC-LLTVVN--------------GAHVGNTKSLARSHTGDF 330 (520)
Q Consensus 271 ~~~~-~~~~v~~~~--~~~~-~l~~~~-d~~i~iwd~~~~~-~~~~~~--------------~~~~~~i~~l~~s~~~~~ 330 (520)
..+. |...|.++. +++. ++++++ |+.|++||++++. .+..+. .+|...|.+++|+|++++
T Consensus 180 ~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 259 (408)
T 4a11_B 180 HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH 259 (408)
T ss_dssp EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE
T ss_pred eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCE
Confidence 8887 889999988 6776 577877 9999999998875 333331 358889999999999999
Q ss_pred EEEEeCCCeEEEEEcccCccccceeeeeeecCC------cCCEEEEEe-cCCEEEEEeCCCcEEEEeCCcccccCCCCCC
Q 009993 331 LFTGGEDGAIHMYEIINDCTEANVLLVATWIPH------TGPVNSLAF-EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSG 403 (520)
Q Consensus 331 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h------~~~v~~l~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 403 (520)
|++++.||.|++||+.++.. ......+ ......... ....+++++.|+.|++||+.++
T Consensus 260 l~~~~~dg~i~vwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~--------- 324 (408)
T 4a11_B 260 LLTVGTDNRMRLWNSSNGEN------TLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG--------- 324 (408)
T ss_dssp EEEEETTSCEEEEETTTCCB------CCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---------
T ss_pred EEEecCCCeEEEEECCCCcc------ceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC---------
Confidence 99999999999999998742 2222111 111122222 2367778888999999999873
Q ss_pred CceeeeeecCCCcccccCcceeeEEEEec--CCEEEEecCCCeEEEEeCCchHhHHH
Q 009993 404 KRVSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVCGGEEGIVRIWNFSQAFEIER 458 (520)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~~~~~~~~ 458 (520)
.....+.+|...|.++.++ +.+|++|+.||.|++||+.+++.+..
T Consensus 325 ----------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 325 ----------EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp ----------CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------
T ss_pred ----------cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence 3344456777777776665 45999999999999999999876654
No 65
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.2e-35 Score=291.40 Aligned_cols=284 Identities=14% Similarity=0.052 Sum_probs=205.9
Q ss_pred hhhhccccccEEEEEEcc-CCCEEEEEeCCCeEEEEECCCCcE--EEEeCCCCceEEEEe--c-CCCEEEEEeCCCcEEE
Q 009993 135 IDVLYGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLEDGFS--IASSKPLGCTIRAVA--A-DKKLLVAGGTDGFIHC 208 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~-~~~~l~sgs~dg~v~vwd~~~~~~--~~~~~~~~~~v~~~~--~-~~~~l~sg~~dg~i~v 208 (520)
.....+|...|+||+|+| ++++||+|+.||+|+|||+.++.. ...+.+|...|.++. | ++++|++|+.||+|++
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 345678999999999999 567999999999999999987754 445568988888776 4 6889999999999999
Q ss_pred EEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--
Q 009993 209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA-- 283 (520)
Q Consensus 209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~-- 283 (520)
||++++... .......+...+.+++| ++.+|++|+.||+|++||++.. .+..+. |...|.++.
T Consensus 192 wd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~~~h~~~v~~v~~~ 259 (435)
T 4e54_B 192 QDFKGNILR-----------VFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTHVALN 259 (435)
T ss_dssp EETTSCEEE-----------EEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCSBCCSSCEEEEEEC
T ss_pred eeccCCcee-----------EEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEEecccceEEeeeec
Confidence 998764211 11112234456778888 7789999999999999999754 444454 899999988
Q ss_pred eCCC-EEEEEc-CCeEEEEECCCCeeeEEee--cccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeee
Q 009993 284 PHDT-TVASTS-GSDVYIWDTNSGCLLTVVN--GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT 359 (520)
Q Consensus 284 ~~~~-~l~~~~-d~~i~iwd~~~~~~~~~~~--~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~ 359 (520)
|++. ++++++ |+.|++||+++++....+. .+|...|++++|+|+|.+|++|+.||.|++||+.++. ....
T Consensus 260 p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~------~~~~ 333 (435)
T 4e54_B 260 PCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWD------CPLG 333 (435)
T ss_dssp TTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSS------SEEE
T ss_pred CCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCc------cceE
Confidence 5554 777887 9999999998876543332 3689999999999999999999999999999999873 3333
Q ss_pred ecCCcC------CEEEEEecC--CEEEEEe------------CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccc
Q 009993 360 WIPHTG------PVNSLAFEF--PWLVSAA------------GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML 419 (520)
Q Consensus 360 ~~~h~~------~v~~l~~~~--~~l~s~s------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (520)
+..|.. .+....|++ ..+++++ .++.|++||..++... ....
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~------------------~~l~ 395 (435)
T 4e54_B 334 LIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMM------------------CQLY 395 (435)
T ss_dssp ECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEE------------------EEEC
T ss_pred EecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEE------------------EEEe
Confidence 433321 122334443 3444443 3467999999874221 1112
Q ss_pred cCcceeeE---EEEecCCEEEEecCCCeEEEEeCCchHh
Q 009993 420 HGFECNLL---SVDIGADRIVCGGEEGIVRIWNFSQAFE 455 (520)
Q Consensus 420 ~~~~~~v~---~~~~~~~~l~sg~~Dg~v~iwd~~~~~~ 455 (520)
.+|...|. ++++++.+|++|+ |+.|+||++++++.
T Consensus 396 ~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 396 DPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp CSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred CCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 34444443 4566777888876 78999999998754
No 66
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.4e-35 Score=287.65 Aligned_cols=274 Identities=19% Similarity=0.262 Sum_probs=223.1
Q ss_pred cCcchhhhhhhhhcCCCCCCC-CCCCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 009993 99 SDHHAWKEFYCERWGLPIASA-PLGAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED 173 (520)
Q Consensus 99 ~~~~lW~~~~~~~~~~~~~~~-~~~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~ 173 (520)
..|. ..+++..|. |+... ..++.+...++|+ +....+++|...|.+++|+|++++|++|+.|+.|++||+.+
T Consensus 63 ~gH~--~~V~~~~~s-p~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~ 139 (380)
T 3iz6_a 63 QGHS--GKVYSLDWT-PEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSS 139 (380)
T ss_dssp CCCS--SCEEEEEEC-TTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCC
T ss_pred cccc--cEEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCC
Confidence 3444 346788887 45443 3344456679998 44677899999999999999999999999999999999975
Q ss_pred Cc-------EEEEeCCCCceEEEEe--cC-CCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEe-----ccCCC
Q 009993 174 GF-------SIASSKPLGCTIRAVA--AD-KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL-----WEHEG 238 (520)
Q Consensus 174 ~~-------~~~~~~~~~~~v~~~~--~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~ 238 (520)
.. ....+.+|...+.++. |+ +..|++|+.|++|++||+.++.. ...+ .+|..
T Consensus 140 ~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~-------------~~~~~~~~~~~h~~ 206 (380)
T 3iz6_a 140 QADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR-------------ISIFGSEFPSGHTA 206 (380)
T ss_dssp CSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE-------------EEEECCCSSSSCCS
T ss_pred CccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE-------------EEEeecccCCCCcc
Confidence 32 3345678888777665 44 56799999999999999987642 2222 57999
Q ss_pred CeEEEEE---cCCEEEEEecCCeEEEEECC-CCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEE
Q 009993 239 PITSLAL---DLTRIYSGSWDMTVRVWDRA-LLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTV 310 (520)
Q Consensus 239 ~v~~l~~---~~~~l~s~s~dg~v~iwd~~-~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~ 310 (520)
.|.++++ +++++++|+.|++|++||++ ..+.+..+. |...|.++. |++.+|++++ |++|++||+++++.+..
T Consensus 207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~ 286 (380)
T 3iz6_a 207 DVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV 286 (380)
T ss_dssp CEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEE
T ss_pred CeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEE
Confidence 9999999 56899999999999999998 456667665 889999887 8899999999 99999999999998887
Q ss_pred eecc------cccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeee----cCCcCCEEEEEecC--CEEE
Q 009993 311 VNGA------HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW----IPHTGPVNSLAFEF--PWLV 378 (520)
Q Consensus 311 ~~~~------~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~----~~h~~~v~~l~~~~--~~l~ 378 (520)
+... +...|++++|+|+|++|++|+.||.|++||+..+ ..+..+ .+|.+.|++++|+| .+|+
T Consensus 287 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~------~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 360 (380)
T 3iz6_a 287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA------EMVLNLGTLQNSHEGRISCLGLSSDGSALC 360 (380)
T ss_dssp ECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC------CEEEEECCSCSSCCCCCCEEEECSSSSEEE
T ss_pred ecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC------ceEEEEecccCCCCCceEEEEECCCCCEEE
Confidence 7531 1234899999999999999999999999999887 344444 68999999999976 6999
Q ss_pred EEeCCCcEEEEeCCcc
Q 009993 379 SAAGDGKLSLIDVRKL 394 (520)
Q Consensus 379 s~s~dg~i~vwd~~~~ 394 (520)
+|+.||+|++|++...
T Consensus 361 sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 361 TGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EECTTSCEEEEECCSS
T ss_pred EeeCCCCEEEEecCCC
Confidence 9999999999998763
No 67
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=5.1e-34 Score=283.67 Aligned_cols=256 Identities=23% Similarity=0.351 Sum_probs=225.2
Q ss_pred CCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEE
Q 009993 124 GFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVA 199 (520)
Q Consensus 124 ~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s 199 (520)
.+...++|+ +....+.+|.+.|++++| ++++|++|+.||+|++||+.+++.+..+.+|...|.++..++..+++
T Consensus 151 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s 228 (435)
T 1p22_A 151 RDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVT 228 (435)
T ss_dssp SSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEE
T ss_pred CCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEE
Confidence 345568887 457788999999999998 78999999999999999999999999999999999999988999999
Q ss_pred EeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee-eccC
Q 009993 200 GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDW 278 (520)
Q Consensus 200 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~ 278 (520)
|+.||.|++||+.++.. ......+.+|...|.+++++++++++|+.||+|++||+++++.+..+. |...
T Consensus 229 ~s~dg~i~vwd~~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 298 (435)
T 1p22_A 229 CSKDRSIAVWDMASPTD----------ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG 298 (435)
T ss_dssp EETTSCEEEEECSSSSC----------CEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred eeCCCcEEEEeCCCCCC----------ceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCc
Confidence 99999999999977532 123356779999999999999999999999999999999999999887 8899
Q ss_pred EEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccc---e
Q 009993 279 VYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN---V 354 (520)
Q Consensus 279 v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~---~ 354 (520)
|.++..++.++++++ |+.|++||+++++.+..+. +|...|.+++| ++.+|++|+.||.|++||+.++..... .
T Consensus 299 v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~ 375 (435)
T 1p22_A 299 IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGT 375 (435)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTT
T ss_pred EEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEe-CCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccc
Confidence 999999999999999 9999999999999999887 69999999999 789999999999999999987632111 1
Q ss_pred eeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcc
Q 009993 355 LLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 355 ~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~ 394 (520)
.++..+.+|.+.|++++|++.+|++|+.||.|++||+.+.
T Consensus 376 ~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 376 LCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp TEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC----
T ss_pred hheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCC
Confidence 1677889999999999999999999999999999999875
No 68
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.5e-34 Score=296.92 Aligned_cols=300 Identities=17% Similarity=0.209 Sum_probs=246.5
Q ss_pred hhhhcCCCCCCCCCCCCCCCcccHH--------Hhhhhhcccccc-EEEEEEcc--CCCEEEEEeCCCeEEEEECCCC--
Q 009993 108 YCERWGLPIASAPLGAGFSDDKSWK--------ELIDVLYGHTEA-VLTVFVLA--SAKLLFTSGYDSIVRMWHLEDG-- 174 (520)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~W~--------~~~~~l~~h~~~-V~~l~~~~--~~~~l~sgs~dg~v~vwd~~~~-- 174 (520)
.+..|. |+.......+.....+|+ +....+.+|.+. |++++|+| ++++|++|+.||+|++||+.++
T Consensus 22 ~~~~~s-pdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~ 100 (615)
T 1pgu_A 22 THLSYD-PTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKE 100 (615)
T ss_dssp CCCEEE-TTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGG
T ss_pred eEEEEC-CCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcc
Confidence 445555 444444443444556675 256778999999 99999999 9999999999999999999755
Q ss_pred ------cEEEEeCCCCceEEEEe--cCCCEEEEEeCC----CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEE
Q 009993 175 ------FSIASSKPLGCTIRAVA--ADKKLLVAGGTD----GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITS 242 (520)
Q Consensus 175 ------~~~~~~~~~~~~v~~~~--~~~~~l~sg~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 242 (520)
..+..+..|...|.++. +++++|++++.+ +.|.+||. + .....+.+|...|.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~-------------~~~~~~~~~~~~v~~ 165 (615)
T 1pgu_A 101 SNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--G-------------NSLGEVSGHSQRINA 165 (615)
T ss_dssp GTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--C-------------CEEEECCSCSSCEEE
T ss_pred cccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--C-------------CcceeeecCCccEEE
Confidence 66777888888887765 999999999988 68888873 2 245667899999999
Q ss_pred EEE--cCC-EEEEEecCCeEEEEECCCCcEEEEee-ecc---CEEEEe--eC-CCEEEEEc-CCeEEEEECCCCeeeEEe
Q 009993 243 LAL--DLT-RIYSGSWDMTVRVWDRALLKCLKVLR-HSD---WVYGLA--PH-DTTVASTS-GSDVYIWDTNSGCLLTVV 311 (520)
Q Consensus 243 l~~--~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~---~v~~~~--~~-~~~l~~~~-d~~i~iwd~~~~~~~~~~ 311 (520)
++| ++. .+++++.|+.|++||..+++.+..+. |.. .|.++. ++ ++++++++ |+.|++||+++++.+..+
T Consensus 166 ~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 245 (615)
T 1pgu_A 166 CHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI 245 (615)
T ss_dssp EEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC
T ss_pred EEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEe
Confidence 999 444 89999999999999999999998887 777 898887 77 88999988 999999999999999888
Q ss_pred ec---ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCC----cCCEEEEEe-cCCEEEEEeCC
Q 009993 312 NG---AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH----TGPVNSLAF-EFPWLVSAAGD 383 (520)
Q Consensus 312 ~~---~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h----~~~v~~l~~-~~~~l~s~s~d 383 (520)
.. +|...|.+++|+ ++.+|++++.||.|++||++++ ..+..+..+ ...+.++.| ++.++++++.|
T Consensus 246 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 318 (615)
T 1pgu_A 246 EDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS------KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 318 (615)
T ss_dssp CBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT------EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETT
T ss_pred cccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC------cEEEEEcCCCCcccCceeEEEeCCCCeEEEEECC
Confidence 44 699999999999 9999999999999999999988 566666655 467888888 67899999999
Q ss_pred CcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCC
Q 009993 384 GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFS 451 (520)
Q Consensus 384 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~ 451 (520)
|.|++||+.+.. ....+.+|...+.++.+ ++ +++++.||.|++|++.
T Consensus 319 g~i~~~d~~~~~-------------------~~~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 319 GTLNFYELGHDE-------------------VLKTISGHNKGITALTV-NP-LISGSYDGRIMEWSSS 365 (615)
T ss_dssp SCEEEEETTEEE-------------------EEEEECCCSSCEEEEET-TT-TEEEETTSCEEETTTT
T ss_pred CCEEEEECCCCc-------------------EEEEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEch
Confidence 999999998732 22344567777777777 77 8888888888888876
No 69
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.6e-34 Score=271.92 Aligned_cols=244 Identities=15% Similarity=0.146 Sum_probs=192.7
Q ss_pred hhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc--EEEEeCCCCceEEEEe--c--CCCEEEEEeCCCcEEEE
Q 009993 136 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVA--A--DKKLLVAGGTDGFIHCW 209 (520)
Q Consensus 136 ~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~--~--~~~~l~sg~~dg~i~vw 209 (520)
..+.+|.+.|++++|+|+|++|++|+.|++|+|||+.++. .+..+.+|...|.++. + ++++|++|+.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 4568999999999999999999999999999999998875 4677899999998876 3 38899999999999999
Q ss_pred EcccCcceeeeccCCccccceEEeccCCCCeEEEEEc----CCEEEEEecCCeEEEEECCCCcEE---EEee-eccCEEE
Q 009993 210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD----LTRIYSGSWDMTVRVWDRALLKCL---KVLR-HSDWVYG 281 (520)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~v~iwd~~~~~~~---~~~~-~~~~v~~ 281 (520)
|+.++. ......+.+|...|.+++|+ +.+|++|+.|++|++||++++... ..+. |...|.+
T Consensus 87 d~~~~~-----------~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~ 155 (316)
T 3bg1_A 87 REENGT-----------WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNA 155 (316)
T ss_dssp CCSSSC-----------CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCC
T ss_pred ECCCCc-----------ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcce
Confidence 987652 12445677899999999993 568999999999999999876432 2222 6667766
Q ss_pred Ee--eC-----------------CCEEEEEc-CCeEEEEECCCC---eeeEEeecccccceEEEEecCCC----CEEEEE
Q 009993 282 LA--PH-----------------DTTVASTS-GSDVYIWDTNSG---CLLTVVNGAHVGNTKSLARSHTG----DFLFTG 334 (520)
Q Consensus 282 ~~--~~-----------------~~~l~~~~-d~~i~iwd~~~~---~~~~~~~~~~~~~i~~l~~s~~~----~~l~tg 334 (520)
+. |+ +.+|++++ |+.|++||++.+ +.+..+. +|...|.+++|+|++ .+|++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~-~h~~~V~~v~~sp~~~~~~~~las~ 234 (316)
T 3bg1_A 156 VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE-AHSDWVRDVAWAPSIGLPTSTIASC 234 (316)
T ss_dssp CEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB-CCSSCEEEEECCCCSSCSCCEEEEE
T ss_pred EEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc-cCCCceEEEEecCCCCCCCceEEEE
Confidence 65 43 36788888 999999999765 3455554 799999999999986 899999
Q ss_pred eCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993 335 GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 393 (520)
+.||+|++|++.+..... .....+..|...|.+++|+| ++|++++.||.|++|+...
T Consensus 235 s~D~~v~iw~~~~~~~~~--~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 235 SQDGRVFIWTCDDASSNT--WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp ETTCEEEEEECSSTTCCC--CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred cCCCeEEEEEccCccccc--hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 999999999997632100 11233457889999999986 6999999999999999753
No 70
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-33 Score=299.71 Aligned_cols=234 Identities=12% Similarity=0.056 Sum_probs=185.2
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV 212 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~ 212 (520)
.....||.+.|++++|+|++++||+|+.||+|+||+..+.+....+ .|...|.++. + +++|++++.|++|++||+.
T Consensus 10 ~~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~ 87 (902)
T 2oaj_A 10 ETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLY 87 (902)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETT
T ss_pred cccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECC
Confidence 3345699999999999999999999999999999999887766554 3666676655 7 7899999999999999998
Q ss_pred cCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEE-----------Eee-eccC
Q 009993 213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLK-----------VLR-HSDW 278 (520)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~-----------~~~-~~~~ 278 (520)
++. ....+ .|.+.|++++| +++++++|+.||+|++||++++++.. .+. |...
T Consensus 88 ~~~-------------~~~~~-~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~ 153 (902)
T 2oaj_A 88 SQK-------------VLTTV-FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSP 153 (902)
T ss_dssp TCS-------------EEEEE-ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCC
T ss_pred CCc-------------EEEEE-cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCC
Confidence 763 23333 36789999999 77899999999999999999887641 112 6788
Q ss_pred EEEEe--eC-CCEEEEEc-CCeEEEEECCCCeeeEEeec-----------------ccccceEEEEecCCCCEEEEEeCC
Q 009993 279 VYGLA--PH-DTTVASTS-GSDVYIWDTNSGCLLTVVNG-----------------AHVGNTKSLARSHTGDFLFTGGED 337 (520)
Q Consensus 279 v~~~~--~~-~~~l~~~~-d~~i~iwd~~~~~~~~~~~~-----------------~~~~~i~~l~~s~~~~~l~tg~~d 337 (520)
|.+++ |+ +..+++++ |+.| +||+++++.+..+.. .|...|++++|+|+|.+|++|+.|
T Consensus 154 V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~D 232 (902)
T 2oaj_A 154 IVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHED 232 (902)
T ss_dssp CCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETT
T ss_pred eEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECC
Confidence 98888 43 36788888 8999 999999998887752 135779999999999999999999
Q ss_pred CeEEEEEcccCccccceeeee--ee---c-------------CCcCCEEEEEec----C---CEEEEEeCC-----CcEE
Q 009993 338 GAIHMYEIINDCTEANVLLVA--TW---I-------------PHTGPVNSLAFE----F---PWLVSAAGD-----GKLS 387 (520)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~--~~---~-------------~h~~~v~~l~~~----~---~~l~s~s~d-----g~i~ 387 (520)
|+|++||++++. ++. .+ . .|..+|++++|. | ..|++|+.| ..+.
T Consensus 233 g~i~lWd~~~g~------~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~ 306 (902)
T 2oaj_A 233 NSLVFWDANSGH------MIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLT 306 (902)
T ss_dssp CCEEEEETTTCC------EEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEE
T ss_pred CeEEEEECCCCc------EEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEE
Confidence 999999998873 222 11 1 135579999993 3 357777665 3788
Q ss_pred EEeC
Q 009993 388 LIDV 391 (520)
Q Consensus 388 vwd~ 391 (520)
+|++
T Consensus 307 ~~~~ 310 (902)
T 2oaj_A 307 MIDL 310 (902)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8874
No 71
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.9e-33 Score=266.92 Aligned_cols=257 Identities=16% Similarity=0.262 Sum_probs=204.3
Q ss_pred CCCCCcccHHH-----------hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe
Q 009993 123 AGFSDDKSWKE-----------LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA 191 (520)
Q Consensus 123 ~~~~~~~~W~~-----------~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~ 191 (520)
+.+...++|+. ....+.+|.+.|++++|+|++.++++|+.|++|++||+.+++.+..+.+|...|.++.
T Consensus 46 s~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~ 125 (343)
T 2xzm_R 46 SRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVA 125 (343)
T ss_dssp ETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEE
T ss_pred cCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEE
Confidence 33455688872 2456899999999999999999999999999999999999999999999999888765
Q ss_pred --cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC------------CEEEEEecCC
Q 009993 192 --ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL------------TRIYSGSWDM 257 (520)
Q Consensus 192 --~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~------------~~l~s~s~dg 257 (520)
|++++|++|+.|++|++||+..... .......+|...|.+++|.+ .++++++.||
T Consensus 126 ~sp~~~~l~s~~~d~~i~~wd~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 194 (343)
T 2xzm_R 126 FSPDNRQILSAGAEREIKLWNILGECK-----------FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG 194 (343)
T ss_dssp ECSSTTEEEEEETTSCEEEEESSSCEE-----------EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTS
T ss_pred ECCCCCEEEEEcCCCEEEEEeccCCce-----------eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCC
Confidence 8999999999999999999863210 00111236889999999943 5899999999
Q ss_pred eEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCC-CeeeEEeecccccceEEEEecCCCCEEE
Q 009993 258 TVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNS-GCLLTVVNGAHVGNTKSLARSHTGDFLF 332 (520)
Q Consensus 258 ~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~-~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 332 (520)
+|++||. +.+....+. |...|.+++ |++++|++++ |+.|++||+.. ......+. +...|.+++|+|++.+++
T Consensus 195 ~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~--~~~~v~~v~~sp~~~~la 271 (343)
T 2xzm_R 195 RLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD--AGSTINQIAFNPKLQWVA 271 (343)
T ss_dssp EEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE--CSSCEEEEEECSSSCEEE
T ss_pred EEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec--CCCcEEEEEECCCCCEEE
Confidence 9999994 455555665 889999887 8899999999 99999999944 44444443 556799999999998877
Q ss_pred EEeCCCeEEEEEcccCcccc--cee-----eeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993 333 TGGEDGAIHMYEIINDCTEA--NVL-----LVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 333 tg~~dg~i~iwd~~~~~~~~--~~~-----~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~ 394 (520)
+| .|+.|++||+.+..... ... ......+|...|++++|+| ++|++|+.||.|++|++.++
T Consensus 272 ~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 272 VG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 55 57789999998764311 000 0011237888999999986 69999999999999998764
No 72
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.6e-32 Score=271.48 Aligned_cols=269 Identities=20% Similarity=0.277 Sum_probs=218.2
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEe--CCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeee
Q 009993 145 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS--KPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFD 220 (520)
Q Consensus 145 V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~--~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 220 (520)
+..|+|+++ ++|++|. |++|+|||..+|+....+ .+|...|.+++ +++++|++|+.||.|++||+.++.
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~----- 180 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK----- 180 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-----
Confidence 567999975 5777765 999999999999887765 46776777665 999999999999999999997763
Q ss_pred ccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCc-EEEEee-eccCEEEEe--eCCCEEEEEc-CC
Q 009993 221 ISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLK-CLKVLR-HSDWVYGLA--PHDTTVASTS-GS 295 (520)
Q Consensus 221 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~ 295 (520)
....+.+|...+.++.+++..+++|+.|+.+++||..... .+..+. |...+..+. +++.++++++ |+
T Consensus 181 --------~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~ 252 (420)
T 4gga_A 181 --------RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN 252 (420)
T ss_dssp --------EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred --------EEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccc
Confidence 5667889999999999999999999999999999988654 445555 888888877 8899999998 99
Q ss_pred eEEEEECCCCee----eEEeecccccceEEEEecCCCC-EEEE--EeCCCeEEEEEcccCccccceeeeeeecCCcCCEE
Q 009993 296 DVYIWDTNSGCL----LTVVNGAHVGNTKSLARSHTGD-FLFT--GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN 368 (520)
Q Consensus 296 ~i~iwd~~~~~~----~~~~~~~~~~~i~~l~~s~~~~-~l~t--g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~ 368 (520)
.+++||..+++. +.... .|...|.+++|+|.+. ++++ |+.|++|++||+.++ .+...+..| ..+.
T Consensus 253 ~v~i~~~~~~~~~~~~~~~~~-~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~------~~~~~~~~~-~~v~ 324 (420)
T 4gga_A 253 LVNVWPSAPGEGGWVPLQTFT-QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG------ACLSAVDAH-SQVC 324 (420)
T ss_dssp CEEEEESSCCSSCSCCSEEEC-CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT------EEEEEEECS-SCEE
T ss_pred cceEEeeccccccceeeeeec-ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc------ccceeeccc-ccee
Confidence 999999987653 33443 6899999999999664 5554 457999999999998 566666555 4688
Q ss_pred EEEecC--CEEEEEe--CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC--CEEEEecCC
Q 009993 369 SLAFEF--PWLVSAA--GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEE 442 (520)
Q Consensus 369 ~l~~~~--~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~D 442 (520)
++.|.+ +.+++++ .|+.|+|||+.++ .+...+.+|...|.++.+++ .+|+|||.|
T Consensus 325 ~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~-------------------~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D 385 (420)
T 4gga_A 325 SILWSPHYKELISGHGFAQNQLVIWKYPTM-------------------AKVAELKGHTSRVLSLTMSPDGATVASAAAD 385 (420)
T ss_dssp EEEEETTTTEEEEEECTTTCCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred eeeecCCCCeEEEEEecCCCEEEEEECCCC-------------------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecC
Confidence 888865 5666654 7999999999873 34455778998998887754 599999999
Q ss_pred CeEEEEeCCchHh
Q 009993 443 GIVRIWNFSQAFE 455 (520)
Q Consensus 443 g~v~iwd~~~~~~ 455 (520)
|+|+|||+.+...
T Consensus 386 ~tvriWdv~~~~~ 398 (420)
T 4gga_A 386 ETLRLWRCFELDP 398 (420)
T ss_dssp TEEEEECCSCSSC
T ss_pred CeEEEEECCCCCc
Confidence 9999999976543
No 73
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=8.1e-33 Score=297.20 Aligned_cols=351 Identities=13% Similarity=0.123 Sum_probs=268.5
Q ss_pred hhhhhcCCCCCCCCCC-CCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC
Q 009993 107 FYCERWGLPIASAPLG-AGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK 181 (520)
Q Consensus 107 ~~~~~~~~~~~~~~~~-~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~ 181 (520)
+.|..|+ |+...... ..+...++|+ ..+..+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.
T Consensus 16 v~~i~~s-p~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 94 (814)
T 3mkq_A 16 VKGIDFH-PTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE 94 (814)
T ss_dssp EEEEEEC-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred eEEEEEC-CCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 4567777 55444333 3344568898 3567888999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc---CCEEEEEecC
Q 009993 182 PLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD---LTRIYSGSWD 256 (520)
Q Consensus 182 ~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~d 256 (520)
+|...|.++. |++.+|++|+.||.|++||+.++. .....+.+|...|.+++|+ ++.+++++.|
T Consensus 95 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 162 (814)
T 3mkq_A 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW------------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (814)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS------------EEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc------------eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC
Confidence 9998888765 899999999999999999997652 3455677899999999994 4689999999
Q ss_pred CeEEEEECCCCcEEEEee--eccCEEEEe--e--CCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCC
Q 009993 257 MTVRVWDRALLKCLKVLR--HSDWVYGLA--P--HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD 329 (520)
Q Consensus 257 g~v~iwd~~~~~~~~~~~--~~~~v~~~~--~--~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~ 329 (520)
|+|++||+.++.....+. +...+.++. + ++.++++++ |+.|++||+.+++.+..+. +|...|.+++|+|++.
T Consensus 163 g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~ 241 (814)
T 3mkq_A 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLP 241 (814)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSS
T ss_pred CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCC
Confidence 999999999888777765 446677766 5 889999999 8999999999999988887 6999999999999999
Q ss_pred EEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCC---EEEEEeCCCcEEEEeCCcccccCCCCCCCce
Q 009993 330 FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP---WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRV 406 (520)
Q Consensus 330 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 406 (520)
++++|+.||.|++||+.++ ..+..+..|...+.+++|+|+ .+++++.|+.+.+|++...............
T Consensus 242 ~l~~~~~dg~v~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 315 (814)
T 3mkq_A 242 IIISGSEDGTLKIWNSSTY------KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKL 315 (814)
T ss_dssp EEEEEETTSCEEEEETTTC------SEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEE
T ss_pred EEEEEeCCCeEEEEECCCC------cEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCE
Confidence 9999999999999999988 678888899999999999874 2355555777999998764322211111100
Q ss_pred eee------------------------eecCCCcccccCcce--eeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHh
Q 009993 407 SRV------------------------IEVEPPQRMLHGFEC--NLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRA 460 (520)
Q Consensus 407 ~~~------------------------~~~~~~~~~~~~~~~--~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~ 460 (520)
... ............+.. ...++++++.++++++ ||.+.+|++.....
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~----- 389 (814)
T 3mkq_A 316 VWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRN----- 389 (814)
T ss_dssp EEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEE-----
T ss_pred EEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccc-----
Confidence 000 000001111222333 3455566667888888 89999999742211
Q ss_pred hhhcccccchhhhhccceeeeccCCCccccccc
Q 009993 461 RALRGIRLENRMRRRKLQTEMSSKGGRTDQCSV 493 (520)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~ 493 (520)
........++|+|||+.++++..
T Consensus 390 ----------~~~~~i~~~~~spdg~~la~~~~ 412 (814)
T 3mkq_A 390 ----------KAFGKCQDFVWGPDSNSYALIDE 412 (814)
T ss_dssp ----------EEEEECSEEEECTTSSCEEEECT
T ss_pred ----------cCCCceEEEEEeCCCCeEEEEeC
Confidence 11234568899999999887653
No 74
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=8.1e-33 Score=267.00 Aligned_cols=297 Identities=13% Similarity=0.076 Sum_probs=214.6
Q ss_pred hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEE-EEEeCCCcEEEEEcc
Q 009993 134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLL-VAGGTDGFIHCWRAV 212 (520)
Q Consensus 134 ~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l-~sg~~dg~i~vwd~~ 212 (520)
.+.++.+|.+.|++++|+|||++|++|+.|+ +++|++.+++.......+...+.++.++++.+ ++|+.|++|++||..
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~ 89 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDV 89 (355)
T ss_dssp --------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETT
T ss_pred CccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECC
Confidence 3556789999999999999999999998775 78999998877766555556677777887777 567888999999998
Q ss_pred cCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCC-cEEEEeeeccCEEEEeeCCCEEEE
Q 009993 213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALL-KCLKVLRHSDWVYGLAPHDTTVAS 291 (520)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~l~~ 291 (520)
++. ....+ .|...|.++.++++.++++. |+.|++||+.++ +.+..+.....+.++++ .+++.
T Consensus 90 ~~~-------------~~~~~-~~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~ 152 (355)
T 3vu4_A 90 KKQ-------------DVSRI-KVDAPVKDLFLSREFIVVSY-GDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVY 152 (355)
T ss_dssp TTE-------------EEEEE-ECSSCEEEEEECSSEEEEEE-TTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEE
T ss_pred CCc-------------EEEEE-ECCCceEEEEEcCCEEEEEE-cCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEE
Confidence 763 23333 36779999999888877765 789999999988 66666655444555556 66666
Q ss_pred E--c-CCeEEEEECCCCe---------------e-eEEeecccccceEEEEecCCCCEEEEEeCCCe-EEEEEcccCccc
Q 009993 292 T--S-GSDVYIWDTNSGC---------------L-LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA-IHMYEIINDCTE 351 (520)
Q Consensus 292 ~--~-d~~i~iwd~~~~~---------------~-~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~-i~iwd~~~~~~~ 351 (520)
+ + +|.|++||++++. + +..+. +|...|++++|+|+|.+|++|+.||+ |++||++++
T Consensus 153 ~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~-~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~--- 228 (355)
T 3vu4_A 153 SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK-AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG--- 228 (355)
T ss_dssp EESSCTTCEEEEECCC------------------CCEEEC-CCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC---
T ss_pred eCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE-ccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC---
Confidence 4 5 8999999999865 1 55565 79999999999999999999999998 999999998
Q ss_pred cceeeeeeec-C-CcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceee-ee-ecC-CCcccc---cC
Q 009993 352 ANVLLVATWI-P-HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSR-VI-EVE-PPQRML---HG 421 (520)
Q Consensus 352 ~~~~~~~~~~-~-h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~-~~~-~~~~~~---~~ 421 (520)
.++..+. + |...|++++|+| .+|++++.|++|++||++................ .. ... .....+ ..
T Consensus 229 ---~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (355)
T 3vu4_A 229 ---VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKH 305 (355)
T ss_dssp ---CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTT
T ss_pred ---cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCC
Confidence 6777787 5 999999999976 6999999999999999986532111000000000 00 000 000000 11
Q ss_pred cceeeEEEEecCCEEEEecCCCeEEEEeCCchHh
Q 009993 422 FECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFE 455 (520)
Q Consensus 422 ~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~ 455 (520)
....+.++.++++.|++++.||.+++|++..+..
T Consensus 306 ~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 306 VRGCKIAWISESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp CCCCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred CCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence 1225567777777999999999999999986643
No 75
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-33 Score=301.39 Aligned_cols=232 Identities=11% Similarity=0.101 Sum_probs=168.8
Q ss_pred hhhhhcCCCCCCCC-CCCCCCCcccHHHhh---hhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCC
Q 009993 107 FYCERWGLPIASAP-LGAGFSDDKSWKELI---DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP 182 (520)
Q Consensus 107 ~~~~~~~~~~~~~~-~~~~~~~~~~W~~~~---~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~ 182 (520)
+.|..|. |+..++ .++.+...++|+... .....|...|.+++|+| |++|++++.|++|++||+.+++.+..+.
T Consensus 20 V~~lafs-pdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~- 96 (902)
T 2oaj_A 20 PIAAAFD-FTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF- 96 (902)
T ss_dssp EEEEEEE-TTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-
T ss_pred cEEEEEC-CCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-
Confidence 4566666 444332 233345568897221 11235889999999999 8899999999999999999999888886
Q ss_pred CCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC---CEEEEEecCC
Q 009993 183 LGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL---TRIYSGSWDM 257 (520)
Q Consensus 183 ~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg 257 (520)
|...|.++. |++++|++|+.||.|++||+.++....+..... ......+.+|.+.|.+++|++ ..+++|+.||
T Consensus 97 ~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~--~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg 174 (902)
T 2oaj_A 97 VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNL--QKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYV 174 (902)
T ss_dssp CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCH--HHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSC
T ss_pred CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccc--cccccccccCCCCeEEEEEccCCCCEEEEEeCCC
Confidence 555676665 899999999999999999998764321111000 000023467999999999954 5799999999
Q ss_pred eEEEEECCCCcEEEEee-e------------------ccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEE--ee-
Q 009993 258 TVRVWDRALLKCLKVLR-H------------------SDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTV--VN- 312 (520)
Q Consensus 258 ~v~iwd~~~~~~~~~~~-~------------------~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~--~~- 312 (520)
+| +||+++++++..+. | ...|.++. |++.+|++++ |+.|++||+++++++.. +.
T Consensus 175 ~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~ 253 (902)
T 2oaj_A 175 TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFE 253 (902)
T ss_dssp EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSC
T ss_pred cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecc
Confidence 99 99999999888776 3 36798887 8899999999 99999999999887653 21
Q ss_pred -cc-------------cccceEEEEec----CCC-CEEEEEeCC-----CeEEEEE
Q 009993 313 -GA-------------HVGNTKSLARS----HTG-DFLFTGGED-----GAIHMYE 344 (520)
Q Consensus 313 -~~-------------~~~~i~~l~~s----~~~-~~l~tg~~d-----g~i~iwd 344 (520)
.. |...|++++|+ |++ .+|++|+.| +.+.+|+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~ 309 (902)
T 2oaj_A 254 TEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMID 309 (902)
T ss_dssp SCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEE
T ss_pred cccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEe
Confidence 01 34578999995 443 456666554 2566666
No 76
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=9.8e-33 Score=267.59 Aligned_cols=283 Identities=14% Similarity=0.219 Sum_probs=225.9
Q ss_pred hhhhhccccccEEEEEEccC---CCEEEEEeCCCeEEEEECCC-CcEE-EEeCCCCceEEEEe--cCCCEEEEEeCCCcE
Q 009993 134 LIDVLYGHTEAVLTVFVLAS---AKLLFTSGYDSIVRMWHLED-GFSI-ASSKPLGCTIRAVA--ADKKLLVAGGTDGFI 206 (520)
Q Consensus 134 ~~~~l~~h~~~V~~l~~~~~---~~~l~sgs~dg~v~vwd~~~-~~~~-~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i 206 (520)
.+..+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +..+ ..+.+|...|.++. +++++|++|+.||.|
T Consensus 31 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v 110 (368)
T 3mmy_A 31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTA 110 (368)
T ss_dssp CEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred eeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcE
Confidence 46678999999999999999 69999999999999999997 5555 67788888888766 899999999999999
Q ss_pred EEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE----cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEE
Q 009993 207 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGL 282 (520)
Q Consensus 207 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~ 282 (520)
++||+.++. ...+.+|...|.+++| ++.++++++.||.|++||+++++.+..+.....+.++
T Consensus 111 ~iwd~~~~~--------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 176 (368)
T 3mmy_A 111 KMWDLSSNQ--------------AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCA 176 (368)
T ss_dssp EEEETTTTE--------------EEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEE
T ss_pred EEEEcCCCC--------------ceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEE
Confidence 999998762 3345679999999999 4467999999999999999999999999877788888
Q ss_pred eeCCCEEEEEc-CCeEEEEECCCCeeeEE-eecccccceEEEEecCCCCE----EEEEeCCCeEEEEEcccCccccceee
Q 009993 283 APHDTTVASTS-GSDVYIWDTNSGCLLTV-VNGAHVGNTKSLARSHTGDF----LFTGGEDGAIHMYEIINDCTEANVLL 356 (520)
Q Consensus 283 ~~~~~~l~~~~-d~~i~iwd~~~~~~~~~-~~~~~~~~i~~l~~s~~~~~----l~tg~~dg~i~iwd~~~~~~~~~~~~ 356 (520)
.+.+..++++. ++.+++||++....... ....+...+.++++.++... +++|+.||.|++||++..... ..
T Consensus 177 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~---~~ 253 (368)
T 3mmy_A 177 DVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA---KD 253 (368)
T ss_dssp EEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH---HH
T ss_pred EecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc---cc
Confidence 86666777766 99999999988654333 33334555666666655544 999999999999999876321 23
Q ss_pred eeeecCCcC------------CEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCc
Q 009993 357 VATWIPHTG------------PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGF 422 (520)
Q Consensus 357 ~~~~~~h~~------------~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (520)
+..+.+|.. +|++++|+| ++|++|+.||.|++||+.++. ....+.+|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~-------------------~~~~~~~~ 314 (368)
T 3mmy_A 254 NFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART-------------------KLKTSEQL 314 (368)
T ss_dssp SEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE-------------------EEEECCCC
T ss_pred ceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc-------------------EEEEecCC
Confidence 455666665 799999976 599999999999999998742 23345567
Q ss_pred ceeeEEEEec--CCEEEEecCCCeEEEEeCCc
Q 009993 423 ECNLLSVDIG--ADRIVCGGEEGIVRIWNFSQ 452 (520)
Q Consensus 423 ~~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~~ 452 (520)
...+.++.++ +.+|++|+.|+..+.|++-+
T Consensus 315 ~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 315 DQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp SSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred CCCceEEEECCCCCeEEEEecccccccccccC
Confidence 7777777665 45999999998766666543
No 77
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=8.9e-32 Score=255.57 Aligned_cols=267 Identities=19% Similarity=0.254 Sum_probs=214.2
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC--CCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeee
Q 009993 145 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK--PLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFD 220 (520)
Q Consensus 145 V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~--~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 220 (520)
+.+|+|++++ +|++| .|++|+|||+.+++.+..+. +|...|.++. +++++|++|+.||+|++||+.++.
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~----- 100 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK----- 100 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-----
Confidence 4678999875 67766 49999999999999887664 6776777665 899999999999999999998763
Q ss_pred ccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCc-EEEEee-eccCEEEEe--eCCCEEEEEc-CC
Q 009993 221 ISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLK-CLKVLR-HSDWVYGLA--PHDTTVASTS-GS 295 (520)
Q Consensus 221 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~ 295 (520)
....+.+|...+.++.+++..+++++.++.+++|+..... .+..+. |...+..+. ++++++++++ |+
T Consensus 101 --------~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 172 (318)
T 4ggc_A 101 --------RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN 172 (318)
T ss_dssp --------EEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred --------eEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCc
Confidence 5567789999999999999999999999999999988764 344444 788888776 7889999998 99
Q ss_pred eEEEEECCCCeee----EEeecccccceEEEEecCCCCE---EEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEE
Q 009993 296 DVYIWDTNSGCLL----TVVNGAHVGNTKSLARSHTGDF---LFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN 368 (520)
Q Consensus 296 ~i~iwd~~~~~~~----~~~~~~~~~~i~~l~~s~~~~~---l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~ 368 (520)
.|++||+++++.. ... ..+.+.|.++.++|++.. +++++.++.|++||.... .... ...+...+.
T Consensus 173 ~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~------~~~~-~~~~~~~v~ 244 (318)
T 4ggc_A 173 LVNVWPSAPGEGGWVPLQTF-TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG------ACLS-AVDAHSQVC 244 (318)
T ss_dssp CEEEEESSCBTTBSCCSEEE-CCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC------CEEE-EEECSSCEE
T ss_pred ceeEEECCCCcccccceeee-cccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc------cccc-cccceeeee
Confidence 9999999887532 222 357889999999997653 346778999999999887 3333 335667889
Q ss_pred EEEecC--CEEEEE--eCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC--CEEEEecCC
Q 009993 369 SLAFEF--PWLVSA--AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEE 442 (520)
Q Consensus 369 ~l~~~~--~~l~s~--s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~D 442 (520)
.+.|.+ ..++++ +.|+.|++||++++ .+...+.+|...|.++.+++ .+|+|||.|
T Consensus 245 ~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~-------------------~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D 305 (318)
T 4ggc_A 245 SILWSPHYKELISGHGFAQNQLVIWKYPTM-------------------AKVAELKGHTSRVLSLTMSPDGATVASAAAD 305 (318)
T ss_dssp EEEEETTTTEEEEEECTTTCCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred eeeecccccceEEEEEcCCCEEEEEECCCC-------------------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecC
Confidence 999965 555554 47999999999873 34455778998898888764 499999999
Q ss_pred CeEEEEeCCch
Q 009993 443 GIVRIWNFSQA 453 (520)
Q Consensus 443 g~v~iwd~~~~ 453 (520)
|+|+|||+.+.
T Consensus 306 ~~v~iWd~~~~ 316 (318)
T 4ggc_A 306 ETLRLWRCFEL 316 (318)
T ss_dssp TEEEEECCSCC
T ss_pred CeEEEEECCCC
Confidence 99999998753
No 78
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.7e-32 Score=255.69 Aligned_cols=245 Identities=18% Similarity=0.219 Sum_probs=193.7
Q ss_pred EEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc----CCEEE
Q 009993 178 ASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD----LTRIY 251 (520)
Q Consensus 178 ~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~ 251 (520)
..+.+|...|.++. +++++|++|+.|++|++||+.+.. ......+.+|.++|.+++|. +++|+
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-----------~~~~~~l~gH~~~V~~v~~s~~~~g~~l~ 71 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-----------HKLIDTLTGHEGPVWRVDWAHPKFGTILA 71 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-----------BCCCEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-----------cEEEEEEccccCCeEEEEecCCCcCCEEE
Confidence 45678888887665 899999999999999999986431 23556788999999999992 68999
Q ss_pred EEecCCeEEEEECCCCc--EEEEee-eccCEEEEe--eC--CCEEEEEc-CCeEEEEECCCCee--eEEeecccccceEE
Q 009993 252 SGSWDMTVRVWDRALLK--CLKVLR-HSDWVYGLA--PH--DTTVASTS-GSDVYIWDTNSGCL--LTVVNGAHVGNTKS 321 (520)
Q Consensus 252 s~s~dg~v~iwd~~~~~--~~~~~~-~~~~v~~~~--~~--~~~l~~~~-d~~i~iwd~~~~~~--~~~~~~~~~~~i~~ 321 (520)
+|+.|++|++||+++++ .+..+. |...|.++. |+ +.++++++ |+.|++||++++.. ...+. +|...|.+
T Consensus 72 s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~-~h~~~v~~ 150 (297)
T 2pm7_B 72 SCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNS 150 (297)
T ss_dssp EEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE-CCSSCEEE
T ss_pred EEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee-cccCccce
Confidence 99999999999998874 444454 888999988 54 78899988 99999999987632 33343 69999999
Q ss_pred EEecCC-------------CCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-----CEEEEEeCC
Q 009993 322 LARSHT-------------GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-----PWLVSAAGD 383 (520)
Q Consensus 322 l~~s~~-------------~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~l~s~s~d 383 (520)
++|+|+ +++|++|+.|++|++||++++.. .......+.+|...|++++|+| .+|++++.|
T Consensus 151 ~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~--~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D 228 (297)
T 2pm7_B 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ--TYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD 228 (297)
T ss_dssp EEECCCC------------CCEEEEEETTSCEEEEEEETTTT--EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred EeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc--eEEEEEEecCCCCceEEEEECCCCCCceEEEEEECC
Confidence 999997 57999999999999999987631 1125667889999999999987 489999999
Q ss_pred CcEEEEeCCcccccCCCCCCCceeeeeecCCCcccc--cCcceeeEEEEe--cCCEEEEecCCCeEEEEeCCc
Q 009993 384 GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML--HGFECNLLSVDI--GADRIVCGGEEGIVRIWNFSQ 452 (520)
Q Consensus 384 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~--~~~~l~sg~~Dg~v~iwd~~~ 452 (520)
++|++||+++..... ....+ .+|...+.++++ ++++|++++.||.|++|+...
T Consensus 229 ~~v~iWd~~~~~~~~----------------~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 229 RTCIIWTQDNEQGPW----------------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SCEEEEEESSTTSCC----------------EEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CcEEEEEeCCCCCcc----------------ceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 999999987631100 00111 345556666655 556999999999999999763
No 79
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.7e-32 Score=268.94 Aligned_cols=250 Identities=21% Similarity=0.273 Sum_probs=216.1
Q ss_pred CCCcccHH----Hhhhh--hccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEE
Q 009993 125 FSDDKSWK----ELIDV--LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLV 198 (520)
Q Consensus 125 ~~~~~~W~----~~~~~--l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 198 (520)
+...++|+ ++.+. +.+|.+.|++|+|+|+|++|++|+.||+|+|||+.+++.+..+.+|...+.+++.++..++
T Consensus 124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~ 203 (420)
T 4gga_A 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILS 203 (420)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEE
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEE
Confidence 55668998 33343 4578899999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcE----EEE
Q 009993 199 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKC----LKV 272 (520)
Q Consensus 199 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~----~~~ 272 (520)
+|+.|+.+++||..... .....+.+|...+..+.+ ++.++++++.|+.+++||..+++. +..
T Consensus 204 sgs~d~~i~~~d~~~~~------------~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~ 271 (420)
T 4gga_A 204 SGSRSGHIHHHDVRVAE------------HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT 271 (420)
T ss_dssp EEETTSEEEEEETTSSS------------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEE
T ss_pred EEeCCCceeEeeecccc------------eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeee
Confidence 99999999999987652 345677899999999999 779999999999999999987653 233
Q ss_pred e-eeccCEEEEe--e-CCCEEEEE--c-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEe--CCCeEEEE
Q 009993 273 L-RHSDWVYGLA--P-HDTTVAST--S-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG--EDGAIHMY 343 (520)
Q Consensus 273 ~-~~~~~v~~~~--~-~~~~l~~~--~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~--~dg~i~iw 343 (520)
. .|...|.++. + ++.+++++ + |+.|++||+.+++....+. +...+.++.|+|+++.+++++ .|+.|+||
T Consensus 272 ~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~--~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iw 349 (420)
T 4gga_A 272 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGHGFAQNQLVIW 349 (420)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE--CSSCEEEEEEETTTTEEEEEECTTTCCEEEE
T ss_pred ecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec--cccceeeeeecCCCCeEEEEEecCCCEEEEE
Confidence 3 3888898887 3 45566553 4 8999999999999998886 556799999999999888765 79999999
Q ss_pred EcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993 344 EIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~ 394 (520)
|+.++ .++.++.+|.+.|++++|+| .+|+||+.|++|+|||+...
T Consensus 350 d~~~~------~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 350 KYPTM------AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp ETTTC------CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred ECCCC------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 99998 78899999999999999976 69999999999999999764
No 80
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.5e-32 Score=261.98 Aligned_cols=279 Identities=18% Similarity=0.255 Sum_probs=221.9
Q ss_pred hcCcchhhhhhhhhcCCCCCCCCCC--CCCCCcccHH---------HhhhhhccccccEEEEEEccCCCEEEEEeCCCeE
Q 009993 98 ASDHHAWKEFYCERWGLPIASAPLG--AGFSDDKSWK---------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIV 166 (520)
Q Consensus 98 ~~~~~lW~~~~~~~~~~~~~~~~~~--~~~~~~~~W~---------~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v 166 (520)
+..|. ..+.|..|. |.....+. +.+...++|+ ...+++++|.+.|++++|+|++++|++|+.|+.|
T Consensus 34 L~GH~--~~V~~v~~s-p~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i 110 (340)
T 4aow_A 34 LKGHN--GWVTQIATT-PQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL 110 (340)
T ss_dssp ECCCS--SCEEEEEEC-TTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ECCcc--CCEEEEEEe-CCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence 44555 446788887 55333333 4455679998 2366789999999999999999999999999999
Q ss_pred EEEECCCCcEEEEeCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEE
Q 009993 167 RMWHLEDGFSIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLA 244 (520)
Q Consensus 167 ~vwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 244 (520)
++|+............+...+... .+++..|++|+.|+.+++||..... .......+|...|..++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~------------~~~~~~~~~~~~v~~~~ 178 (340)
T 4aow_A 111 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC------------KYTVQDESHSEWVSCVR 178 (340)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE------------EEEECSSSCSSCEEEEE
T ss_pred eEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc------------eEEEEeccccCcccceE
Confidence 999999988877776665555444 4889999999999999999986542 23344567999999999
Q ss_pred E--c--CCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccc
Q 009993 245 L--D--LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHV 316 (520)
Q Consensus 245 ~--~--~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~ 316 (520)
+ + ...+++++.|++|++||+++++.+..+. |...|.++. |++++|++++ |+.|++||+++++.+..+. +.
T Consensus 179 ~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~~ 256 (340)
T 4aow_A 179 FSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD--GG 256 (340)
T ss_dssp ECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE--CS
T ss_pred EccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec--CC
Confidence 9 2 3578999999999999999999988887 899999887 8899999999 9999999999999998886 56
Q ss_pred cceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccce---eeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeC
Q 009993 317 GNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANV---LLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDV 391 (520)
Q Consensus 317 ~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~---~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~ 391 (520)
..+.+++|+|++.++ +++.|+.|++||+++....... .......+|...|++++|+| ++|++|+.||.|+|||+
T Consensus 257 ~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 257 DIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp SCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred ceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 789999999987655 5667999999999877321111 11223457899999999976 69999999999999999
Q ss_pred Ccc
Q 009993 392 RKL 394 (520)
Q Consensus 392 ~~~ 394 (520)
.++
T Consensus 336 ~tG 338 (340)
T 4aow_A 336 TIG 338 (340)
T ss_dssp EC-
T ss_pred CCc
Confidence 875
No 81
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.1e-32 Score=264.98 Aligned_cols=290 Identities=16% Similarity=0.175 Sum_probs=206.4
Q ss_pred hhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC----cEEEEeCCCCceEEEEe--c--CCCEEEEEeCCCcEE
Q 009993 136 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG----FSIASSKPLGCTIRAVA--A--DKKLLVAGGTDGFIH 207 (520)
Q Consensus 136 ~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~----~~~~~~~~~~~~v~~~~--~--~~~~l~sg~~dg~i~ 207 (520)
+.+.+|.+.|++++|+|++++|++|+.||.|++||+.++ +....+.+|...|.++. + ++.+|++|+.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 457899999999999999999999999999999999876 46677789999998877 5 589999999999999
Q ss_pred EEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--c--CCEEEEEecCCeEEEEECCCCcEEEEee---------
Q 009993 208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D--LTRIYSGSWDMTVRVWDRALLKCLKVLR--------- 274 (520)
Q Consensus 208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~--~~~l~s~s~dg~v~iwd~~~~~~~~~~~--------- 274 (520)
+||+.++.... ..........+.+|...|.+++| + +.++++++.||.|++||+++++.+..+.
T Consensus 85 vwd~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 160 (351)
T 3f3f_A 85 LWEEDPDQEEC----SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS 160 (351)
T ss_dssp EEEECTTSCTT----SSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred EEecCCCcccc----cccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence 99998763210 00111346677899999999999 4 7899999999999999998876543322
Q ss_pred -----eccCEEEEe--eC---CCEEEEEc-CCeEEEEECCCCee--eEEeecccccceEEEEecCCC----CEEEEEeCC
Q 009993 275 -----HSDWVYGLA--PH---DTTVASTS-GSDVYIWDTNSGCL--LTVVNGAHVGNTKSLARSHTG----DFLFTGGED 337 (520)
Q Consensus 275 -----~~~~v~~~~--~~---~~~l~~~~-d~~i~iwd~~~~~~--~~~~~~~~~~~i~~l~~s~~~----~~l~tg~~d 337 (520)
+...+.++. |+ +..+++++ ++.+.+|+...+.. +..+. +|...|++++|+|++ .+|++|+.|
T Consensus 161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~p~~~~~~~~l~s~~~d 239 (351)
T 3f3f_A 161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP-GHKSLIRSISWAPSIGRWYQLIATGCKD 239 (351)
T ss_dssp CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC-CCCSCEEEEEECCCSSCSSEEEEEEETT
T ss_pred cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC-CCCcceeEEEECCCCCCcceEEEEEcCC
Confidence 455677776 54 88888888 88898888877764 44554 699999999999998 899999999
Q ss_pred CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEE----EEeCCCcEEEEeCCcccccCCCCCCCceeeeee
Q 009993 338 GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLV----SAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE 411 (520)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~----s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 411 (520)
|.|++||++.+. .......+...+......+ ..+. .+.....+.+|+...
T Consensus 240 g~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 295 (351)
T 3f3f_A 240 GRIRIFKITEKL------SPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ------------------ 295 (351)
T ss_dssp SCEEEEEEEECC---------------------------------------------CCSEE------------------
T ss_pred CeEEEEeCCCCc------CccccCCcccceeccCCCcccccccccccccccceeeeeccccc------------------
Confidence 999999998873 2222222222222222222 2222 223344445554433
Q ss_pred cCCCcccccCcceeeEEEEecC--CEEEEecCCCeEEEEeCCchHh
Q 009993 412 VEPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGIVRIWNFSQAFE 455 (520)
Q Consensus 412 ~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~v~iwd~~~~~~ 455 (520)
......+.+|...|.++.+++ .+|++|+.||.|++|++.++..
T Consensus 296 -~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 296 -VELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp -EEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred -ccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 223344567877888777764 5999999999999999997643
No 82
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-32 Score=264.86 Aligned_cols=247 Identities=16% Similarity=0.151 Sum_probs=206.2
Q ss_pred hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECC--CCcEEEEeCCCCceEEEEe--cC--CCEEEEEeCCCcEE
Q 009993 134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLE--DGFSIASSKPLGCTIRAVA--AD--KKLLVAGGTDGFIH 207 (520)
Q Consensus 134 ~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~~~v~~~~--~~--~~~l~sg~~dg~i~ 207 (520)
++.++.+|.+.|++++|+|++++|++|+.||.|++||+. +++.+..+.+|...|.++. ++ +.+|++|+.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 467889999999999999999999999999999999998 5677788999999998876 44 89999999999999
Q ss_pred EEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--c--CCEEEEEecCCeEEEEECCCCcEEE--Ee-eeccCEE
Q 009993 208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D--LTRIYSGSWDMTVRVWDRALLKCLK--VL-RHSDWVY 280 (520)
Q Consensus 208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~--~~~l~s~s~dg~v~iwd~~~~~~~~--~~-~~~~~v~ 280 (520)
+||+.++. ......+.+|...|.+++| + +.++++++.|+.|++||++++.... .+ .|...|.
T Consensus 83 iwd~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~ 151 (379)
T 3jrp_A 83 IWKEENGR-----------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN 151 (379)
T ss_dssp EEEEETTE-----------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEE
T ss_pred EEEcCCCc-----------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceE
Confidence 99998753 2245667789999999999 4 7899999999999999999874322 23 3888999
Q ss_pred EEe--e-------------CCCEEEEEc-CCeEEEEECCCCe----eeEEeecccccceEEEEecCC---CCEEEEEeCC
Q 009993 281 GLA--P-------------HDTTVASTS-GSDVYIWDTNSGC----LLTVVNGAHVGNTKSLARSHT---GDFLFTGGED 337 (520)
Q Consensus 281 ~~~--~-------------~~~~l~~~~-d~~i~iwd~~~~~----~~~~~~~~~~~~i~~l~~s~~---~~~l~tg~~d 337 (520)
++. + ++.++++++ |+.|++||++++. ....+. +|...|.+++|+|+ +.+|++++.|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~l~s~~~d 230 (379)
T 3jrp_A 152 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYLASVSQD 230 (379)
T ss_dssp EEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred EEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe-cccCcEeEEEECCCCCCCCeEEEEeCC
Confidence 988 5 588999988 9999999998764 334444 69999999999999 8999999999
Q ss_pred CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993 338 GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 393 (520)
|.|++||++++..... ........|...|++++|+| .+|++++.||.|++|++..
T Consensus 231 g~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 231 RTCIIWTQDNEQGPWK-KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp SCEEEEEESSTTSCCE-EEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CEEEEEeCCCCCccce-eeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 9999999988632111 23333455889999999976 6999999999999999985
No 83
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.1e-32 Score=267.81 Aligned_cols=256 Identities=18% Similarity=0.174 Sum_probs=219.4
Q ss_pred CCCCCCcccHH----Hhhhhhcc-ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCE
Q 009993 122 GAGFSDDKSWK----ELIDVLYG-HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKL 196 (520)
Q Consensus 122 ~~~~~~~~~W~----~~~~~l~~-h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 196 (520)
.+.+...++|+ +....+.. |.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.++..+++.
T Consensus 109 ~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 188 (401)
T 4aez_A 109 VALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHV 188 (401)
T ss_dssp EEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTE
T ss_pred EECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCE
Confidence 34455568887 23334444 89999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee
Q 009993 197 LVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR 274 (520)
Q Consensus 197 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 274 (520)
+++|+.||.|++||+.... .....+.+|.+.|.+++| ++.+|++|+.||.|++||+++++.+..+.
T Consensus 189 l~~~~~dg~i~i~d~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 256 (401)
T 4aez_A 189 LSSGSRSGAIHHHDVRIAN------------HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT 256 (401)
T ss_dssp EEEEETTSEEEEEETTSSS------------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC
T ss_pred EEEEcCCCCEEEEecccCc------------ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec
Confidence 9999999999999997542 345677889999999999 67899999999999999999999888886
Q ss_pred -eccCEEEEe--eC-CCEEEEEc---CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEE--EeCCCeEEEEEc
Q 009993 275 -HSDWVYGLA--PH-DTTVASTS---GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFT--GGEDGAIHMYEI 345 (520)
Q Consensus 275 -~~~~v~~~~--~~-~~~l~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~t--g~~dg~i~iwd~ 345 (520)
|...|.++. ++ ..++++++ |+.|++||+.+++.+..+. +...+.+++|+|++.++++ |+.||.|++||+
T Consensus 257 ~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~ 334 (401)
T 4aez_A 257 NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY 334 (401)
T ss_dssp CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEE
T ss_pred CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEec
Confidence 888898887 54 45677654 8999999999999998885 6788999999999999999 448999999999
Q ss_pred ccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCccc
Q 009993 346 INDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLL 395 (520)
Q Consensus 346 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~ 395 (520)
.++.. .....+.+|...|.+++|+| .+|++++.||.|++||+.++.
T Consensus 335 ~~~~~----~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 335 SSSGL----TKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp ETTEE----EEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred CCccc----eeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 88632 34555779999999999976 699999999999999998753
No 84
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=6.4e-32 Score=256.55 Aligned_cols=251 Identities=21% Similarity=0.239 Sum_probs=213.2
Q ss_pred CCCCCcccHH----Hhhhhh--ccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCE
Q 009993 123 AGFSDDKSWK----ELIDVL--YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKL 196 (520)
Q Consensus 123 ~~~~~~~~W~----~~~~~l--~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 196 (520)
+.+...++|+ ++++++ .+|...|++++|+|++++|++|+.||+|++||+++++.+..+.+|...+.++++++..
T Consensus 42 g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~ 121 (318)
T 4ggc_A 42 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYI 121 (318)
T ss_dssp EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTE
T ss_pred EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCE
Confidence 3455678998 334444 5788899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEE---
Q 009993 197 LVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLK--- 271 (520)
Q Consensus 197 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~--- 271 (520)
+++|+.++.+++|+..... .....+.+|...+..+.+ +++++++++.|++|++||+++++...
T Consensus 122 l~s~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 189 (318)
T 4ggc_A 122 LSSGSRSGHIHHHDVRVAE------------HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL 189 (318)
T ss_dssp EEEEETTSEEEEEETTSSS------------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS
T ss_pred EEEEecCCceEeeecCCCc------------eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce
Confidence 9999999999999987652 355677899999999999 77899999999999999998875332
Q ss_pred --EeeeccCEEEEe--eC-CCEEE--EEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEe--CCCeEE
Q 009993 272 --VLRHSDWVYGLA--PH-DTTVA--STS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG--EDGAIH 341 (520)
Q Consensus 272 --~~~~~~~v~~~~--~~-~~~l~--~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~--~dg~i~ 341 (520)
...+...|.++. +. +..+. +++ ++.|++||........... +...+..+.|+|++..+++++ .|+.|+
T Consensus 190 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~sg~~d~~i~ 267 (318)
T 4ggc_A 190 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGHGFAQNQLV 267 (318)
T ss_dssp EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE--CSSCEEEEEEETTTTEEEEEECTTTCCEE
T ss_pred eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc--ceeeeeeeeecccccceEEEEEcCCCEEE
Confidence 222677788776 33 44443 344 6899999999988877664 778899999999999887654 799999
Q ss_pred EEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993 342 MYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 393 (520)
+||++++ .++.++.+|.+.|++++|+| .+|+||+.||+|+|||+..
T Consensus 268 iwd~~~~------~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 268 IWKYPTM------AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp EEETTTC------CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEECCCC------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 9999998 78889999999999999976 6999999999999999975
No 85
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=7.7e-32 Score=268.91 Aligned_cols=247 Identities=14% Similarity=0.194 Sum_probs=193.0
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc-----------EEEEeCCCC------------ceEEEEe--cCC
Q 009993 140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF-----------SIASSKPLG------------CTIRAVA--ADK 194 (520)
Q Consensus 140 ~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~-----------~~~~~~~~~------------~~v~~~~--~~~ 194 (520)
.|.+.|++++|+|+|++|++|+.||.|+|||+.++. ....+.+|. ..|.++. +++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 478999999999999999999999999999999877 477888897 5565554 777
Q ss_pred --CEEEEEeCCCcEEEEEcccCcceee--eccCCc------------------------cccceEE-eccCCCCeEEEEE
Q 009993 195 --KLLVAGGTDGFIHCWRAVEVLPHLF--DISGSE------------------------KQNTQFR-LWEHEGPITSLAL 245 (520)
Q Consensus 195 --~~l~sg~~dg~i~vwd~~~~~~~~~--~~~~~~------------------------~~~~~~~-~~~h~~~v~~l~~ 245 (520)
..|++++.||.|++||+.++..... ...... ....... ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 7999999999999999976432110 000000 0001112 3689999999999
Q ss_pred --cCCEEEEEecCCeEEEEECCC-CcEEEEe--------eeccCEEEEe--eCC-CEEEEEc-CCeEEEEECCCCee---
Q 009993 246 --DLTRIYSGSWDMTVRVWDRAL-LKCLKVL--------RHSDWVYGLA--PHD-TTVASTS-GSDVYIWDTNSGCL--- 307 (520)
Q Consensus 246 --~~~~l~s~s~dg~v~iwd~~~-~~~~~~~--------~~~~~v~~~~--~~~-~~l~~~~-d~~i~iwd~~~~~~--- 307 (520)
++++|++| .|++|++||+++ ++.+..+ .|...|.++. |++ .++++++ |+.|++||+++++.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 77899998 799999999994 4555533 3788899988 776 8999998 99999999999886
Q ss_pred -eEEeeccccc------------ceEEEEecCCCCEEEEEeCCCeEEEEEccc-CccccceeeeeeecCCcCC-------
Q 009993 308 -LTVVNGAHVG------------NTKSLARSHTGDFLFTGGEDGAIHMYEIIN-DCTEANVLLVATWIPHTGP------- 366 (520)
Q Consensus 308 -~~~~~~~~~~------------~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~h~~~------- 366 (520)
+..+. +|.. .|.+++|+|++.+|++++. +.|++||++. + .++..+.+|...
T Consensus 265 ~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~------~~~~~~~~~~~~~~~l~~~ 336 (447)
T 3dw8_B 265 HSKLFE-EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN------RPVETYQVHEYLRSKLCSL 336 (447)
T ss_dssp TCEEEC-CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS------SCSCCEESCGGGTTTHHHH
T ss_pred eeeEec-cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc------cccceeecccccccccccc
Confidence 56665 4654 8999999999999999999 9999999987 5 566777777542
Q ss_pred --------EEEEEecC--CEEEEEeCCCcEEEEeCCccc
Q 009993 367 --------VNSLAFEF--PWLVSAAGDGKLSLIDVRKLL 395 (520)
Q Consensus 367 --------v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~ 395 (520)
+..++|+| .+|++|+.||.|++||+.++.
T Consensus 337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence 33488876 699999999999999998754
No 86
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-32 Score=270.45 Aligned_cols=288 Identities=14% Similarity=0.211 Sum_probs=215.8
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCcEEEEe-CCCCceEEEEe--c-CCCEEEEEeCCCcEEEEEcccCcceeeeccCCc
Q 009993 150 VLASAKLLFTSGYDSIVRMWHLEDGFSIASS-KPLGCTIRAVA--A-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSE 225 (520)
Q Consensus 150 ~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~--~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~ 225 (520)
|+|++..+++++ .|+ .+++.+..+ .+|...|.++. + ++.+|++|+.||+|++||+.+.... .
T Consensus 35 f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~-------~ 100 (437)
T 3gre_A 35 FGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG-------E 100 (437)
T ss_dssp GCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT-------C
T ss_pred cCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC-------c
Confidence 678888887765 388 567888888 88988888776 7 8999999999999999998762100 0
Q ss_pred cccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECC---CCcEEEEee-------------eccCEEEEe----
Q 009993 226 KQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRA---LLKCLKVLR-------------HSDWVYGLA---- 283 (520)
Q Consensus 226 ~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~---~~~~~~~~~-------------~~~~v~~~~---- 283 (520)
.......+ +|...|.+++| ++++|++|+.||+|++||+. +++...... +...+.++.
T Consensus 101 ~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 179 (437)
T 3gre_A 101 VYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVN 179 (437)
T ss_dssp CCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEEC
T ss_pred ccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEc
Confidence 01122222 59999999999 67899999999999999995 555544333 234455554
Q ss_pred eCCCEEEEEc-CCeEEEEECCCCeeeEEeecc-cccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec
Q 009993 284 PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGA-HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI 361 (520)
Q Consensus 284 ~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~-~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 361 (520)
+++.++++++ |+.|++||+++++.+..+... |...|++++|+|++.+|++|+.||.|++||++++ .++..+.
T Consensus 180 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~ 253 (437)
T 3gre_A 180 EEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN------VLIRSWS 253 (437)
T ss_dssp SSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT------EEEEEEB
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc------cEEEEEe
Confidence 5688999998 999999999999999888743 8899999999999999999999999999999988 6777765
Q ss_pred -CCcCCEEEEEecC------CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCC-----cccccC--cceeeE
Q 009993 362 -PHTGPVNSLAFEF------PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPP-----QRMLHG--FECNLL 427 (520)
Q Consensus 362 -~h~~~v~~l~~~~------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~v~ 427 (520)
+|..+|++++|+| .+|++|+.||.|++||++++........+..........+. ...+.+ |...|.
T Consensus 254 ~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 333 (437)
T 3gre_A 254 FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALS 333 (437)
T ss_dssp CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGC
T ss_pred cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceE
Confidence 7888999998765 38999999999999999876433221111100000000000 001233 666677
Q ss_pred EEEecCC-EEEEecCCCeEEEEeCCchHhHHH
Q 009993 428 SVDIGAD-RIVCGGEEGIVRIWNFSQAFEIER 458 (520)
Q Consensus 428 ~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~~~~ 458 (520)
++.+++. +|++|+.||.|++||+.++..+..
T Consensus 334 ~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 365 (437)
T 3gre_A 334 TISVSNDKILLTDEATSSIVMFSLNELSSSKA 365 (437)
T ss_dssp CEEEETTEEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred EEEECCceEEEecCCCCeEEEEECCCcccceE
Confidence 7777654 899999999999999998876543
No 87
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.1e-32 Score=285.33 Aligned_cols=267 Identities=20% Similarity=0.259 Sum_probs=215.1
Q ss_pred hhhhhcCCCCCCCCCC--CCCCCcccHHH---------hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 009993 107 FYCERWGLPIASAPLG--AGFSDDKSWKE---------LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF 175 (520)
Q Consensus 107 ~~~~~~~~~~~~~~~~--~~~~~~~~W~~---------~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~ 175 (520)
+.|..|. |.....+. +.+...++|+- ..+.+.+|.+.|.+++|+|++++|++|+.|++|+|||+.++.
T Consensus 385 V~~v~~~-~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~ 463 (694)
T 3dm0_A 385 VTAIATP-IDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGV 463 (694)
T ss_dssp EEEEECC-TTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred eEEEEec-CCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 4566665 33333333 33555688962 245789999999999999999999999999999999999999
Q ss_pred EEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC----CE
Q 009993 176 SIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL----TR 249 (520)
Q Consensus 176 ~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~ 249 (520)
.+..+.+|...|.++. ++++.|++|+.|++|++||........ ......+|...|.+++|++ ..
T Consensus 464 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~----------~~~~~~~h~~~v~~~~~~~~~~~~~ 533 (694)
T 3dm0_A 464 STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYT----------ISEGGEGHRDWVSCVRFSPNTLQPT 533 (694)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE----------ECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCccee----------eccCCCCCCCcEEEEEEeCCCCcce
Confidence 9999999999888765 899999999999999999975431100 0011246899999999933 57
Q ss_pred EEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEec
Q 009993 250 IYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARS 325 (520)
Q Consensus 250 l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s 325 (520)
+++|+.|++|++||++++++...+. |...|.++. ++++++++++ |+.|++||+++++.+..+. +...+.+++|+
T Consensus 534 l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~s 611 (694)
T 3dm0_A 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE--ANSVIHALCFS 611 (694)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB--CSSCEEEEEEC
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec--CCCcEEEEEEc
Confidence 9999999999999999999988887 899999887 8899999999 9999999999999887764 56789999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecC-------------------CcCCEEEEEecC--CEEEEEeCCC
Q 009993 326 HTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP-------------------HTGPVNSLAFEF--PWLVSAAGDG 384 (520)
Q Consensus 326 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------------------h~~~v~~l~~~~--~~l~s~s~dg 384 (520)
|++.++++++ |+.|++||++++ ..+..+.. +...+++++|+| .+|++|+.||
T Consensus 612 p~~~~l~~~~-~~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg 684 (694)
T 3dm0_A 612 PNRYWLCAAT-EHGIKIWDLESK------SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG 684 (694)
T ss_dssp SSSSEEEEEE-TTEEEEEETTTT------EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS
T ss_pred CCCcEEEEEc-CCCEEEEECCCC------CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC
Confidence 9998887775 556999999988 33333322 122478999976 6999999999
Q ss_pred cEEEEeCCc
Q 009993 385 KLSLIDVRK 393 (520)
Q Consensus 385 ~i~vwd~~~ 393 (520)
.|++||+..
T Consensus 685 ~i~iW~i~~ 693 (694)
T 3dm0_A 685 VIRVWGIGR 693 (694)
T ss_dssp EEEEEEC--
T ss_pred eEEEEeccC
Confidence 999999863
No 88
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.3e-32 Score=264.08 Aligned_cols=276 Identities=16% Similarity=0.193 Sum_probs=223.3
Q ss_pred hhhhhhcCCCCCCCCCCCC-----CCCcccHHH----hh-hhhccccccEEEEEEccC---CCEEEEEeCCCeEEEEECC
Q 009993 106 EFYCERWGLPIASAPLGAG-----FSDDKSWKE----LI-DVLYGHTEAVLTVFVLAS---AKLLFTSGYDSIVRMWHLE 172 (520)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~-----~~~~~~W~~----~~-~~l~~h~~~V~~l~~~~~---~~~l~sgs~dg~v~vwd~~ 172 (520)
.+.+..|. |.....+.++ +...++|+. .. ....+|.+.|++++|+|+ +++|++|+.||.|++||+.
T Consensus 20 ~v~~~~~~-p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 98 (357)
T 3i2n_A 20 TVFDCKWV-PCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLE 98 (357)
T ss_dssp CEEEEEEC-TTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTT
T ss_pred ceEEEEEc-CCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCC
Confidence 34667776 5554444444 445688872 22 223489999999999998 6999999999999999999
Q ss_pred CCc-EEEEeCCCCceEEEE--------ecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCC----C
Q 009993 173 DGF-SIASSKPLGCTIRAV--------AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEG----P 239 (520)
Q Consensus 173 ~~~-~~~~~~~~~~~v~~~--------~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~----~ 239 (520)
+++ .+..+.+|...|.++ +++++.|++|+.||.|++||+.++.. ....+..|.+ .
T Consensus 99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~------------~~~~~~~~~~~~~~~ 166 (357)
T 3i2n_A 99 APEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD------------PVANMEPVQGENKRD 166 (357)
T ss_dssp SCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS------------CSEEECCCTTSCCCC
T ss_pred CCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC------------cceeccccCCCCCCc
Confidence 988 888999999999887 47899999999999999999987631 2334444443 8
Q ss_pred eEEEE----E--cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--e---CCCEEEEEc-CCeEEEEECCCCee
Q 009993 240 ITSLA----L--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--P---HDTTVASTS-GSDVYIWDTNSGCL 307 (520)
Q Consensus 240 v~~l~----~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~---~~~~l~~~~-d~~i~iwd~~~~~~ 307 (520)
|.+++ | ++.++++++.||.|++||+++++......+...|.++. + ++..+++++ |+.|++||+++++.
T Consensus 167 v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 246 (357)
T 3i2n_A 167 CWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP 246 (357)
T ss_dssp EEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEET
T ss_pred eEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCc
Confidence 89988 3 77899999999999999999999887777999999988 5 789999998 99999999988766
Q ss_pred eEEee----cccccceEEEEecCCCC-EEEEEeCCCeEEEEEcccCcccc-------------ceeeeeeecCCcCCEEE
Q 009993 308 LTVVN----GAHVGNTKSLARSHTGD-FLFTGGEDGAIHMYEIINDCTEA-------------NVLLVATWIPHTGPVNS 369 (520)
Q Consensus 308 ~~~~~----~~~~~~i~~l~~s~~~~-~l~tg~~dg~i~iwd~~~~~~~~-------------~~~~~~~~~~h~~~v~~ 369 (520)
...+. .+|...|++++|+|++. +|++|+.||.|++||++.+.... ....+..+.+|..+|++
T Consensus 247 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~ 326 (357)
T 3i2n_A 247 TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISS 326 (357)
T ss_dssp TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEE
T ss_pred ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeE
Confidence 54443 26999999999999998 89999999999999998754321 22467788899999999
Q ss_pred EEecC--CEEE-EEeCCCcEEEEeCCcc
Q 009993 370 LAFEF--PWLV-SAAGDGKLSLIDVRKL 394 (520)
Q Consensus 370 l~~~~--~~l~-s~s~dg~i~vwd~~~~ 394 (520)
++|+| .+|+ +++.||.|++||+.+.
T Consensus 327 ~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 327 LDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred EEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 99976 4676 8999999999999864
No 89
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-32 Score=277.69 Aligned_cols=254 Identities=11% Similarity=0.066 Sum_probs=199.3
Q ss_pred CcccHHH----h----hhhhccccccEEEEEEccC------CCEEEEEeCCCeEEEEECCCCcE-----------EEEeC
Q 009993 127 DDKSWKE----L----IDVLYGHTEAVLTVFVLAS------AKLLFTSGYDSIVRMWHLEDGFS-----------IASSK 181 (520)
Q Consensus 127 ~~~~W~~----~----~~~l~~h~~~V~~l~~~~~------~~~l~sgs~dg~v~vwd~~~~~~-----------~~~~~ 181 (520)
..++|+- + ..++.+|.+.|.+++|+|+ +.+||+|+.||+|++||+.++.. ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 3578972 1 1346788999999999996 57999999999999999987642 23677
Q ss_pred CCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEE--E--cC-CEEEEEec
Q 009993 182 PLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLA--L--DL-TRIYSGSW 255 (520)
Q Consensus 182 ~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~--~~-~~l~s~s~ 255 (520)
+|...|.+++ ..+..|++|+.||+|++||+.++. .....+.+|...|.+++ + ++ .+|+||+.
T Consensus 264 ~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~------------~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~ 331 (524)
T 2j04_B 264 LADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPE------------VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAV 331 (524)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCS------------SCSEEEECSSSCEEEEEEECCTTSCCEEEEEET
T ss_pred cCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCC------------CceEEeecccccEEEEEEEcCCCCCeEEEEecc
Confidence 8988998887 234689999999999999997652 23445778999999994 4 45 78999999
Q ss_pred CCeEEEEECCCCcEEEEee-ecc--CEEEE--eeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCC
Q 009993 256 DMTVRVWDRALLKCLKVLR-HSD--WVYGL--APHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD 329 (520)
Q Consensus 256 dg~v~iwd~~~~~~~~~~~-~~~--~v~~~--~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~ 329 (520)
|++|++||++++++...+. |.. .|.++ .|++..+++++ |++|++||++++.++..+. +|.+.|++++|+|++.
T Consensus 332 D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~-gH~~~V~sva~Sp~g~ 410 (524)
T 2j04_B 332 DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV-SRETTITAIGVSRLHP 410 (524)
T ss_dssp TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE-ECSSCEEEEECCSSCC
T ss_pred CCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee-cCCCceEEEEeCCCCC
Confidence 9999999999888766654 432 35444 48888898888 8999999999998877776 6999999999999999
Q ss_pred EEEEEeCCCeEEEEEcccCcccc--------------------------------------ceeeeeeecCCcCCEEEEE
Q 009993 330 FLFTGGEDGAIHMYEIINDCTEA--------------------------------------NVLLVATWIPHTGPVNSLA 371 (520)
Q Consensus 330 ~l~tg~~dg~i~iwd~~~~~~~~--------------------------------------~~~~~~~~~~h~~~v~~l~ 371 (520)
+|++|+.||+|++||+....... ....+..+.+|...|++|+
T Consensus 411 ~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Va 490 (524)
T 2j04_B 411 MVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTK 490 (524)
T ss_dssp BCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEE
T ss_pred eEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEE
Confidence 99999999999999864321000 0123445667999999999
Q ss_pred ecCC-----EEEEEeCCCcEEEEeCCc
Q 009993 372 FEFP-----WLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 372 ~~~~-----~l~s~s~dg~i~vwd~~~ 393 (520)
|+|+ .+++|+.||.|+||+++.
T Consensus 491 fsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 491 WNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp ECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred CCCCCCccHHHHhhccCceEEEEEccc
Confidence 9885 899999999999999875
No 90
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=9.2e-32 Score=263.97 Aligned_cols=271 Identities=17% Similarity=0.149 Sum_probs=222.3
Q ss_pred hhhhhhcCCCCCCCCCCCCCCCcccHH----H------hhhhhccccccEEEEEEccC----C---CEEEEEeCCCeEEE
Q 009993 106 EFYCERWGLPIASAPLGAGFSDDKSWK----E------LIDVLYGHTEAVLTVFVLAS----A---KLLFTSGYDSIVRM 168 (520)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~W~----~------~~~~l~~h~~~V~~l~~~~~----~---~~l~sgs~dg~v~v 168 (520)
.+.+..|. | ..+...+.+...++|+ + ....+.+|...|++++|+|+ + ++|++|+.||.|++
T Consensus 18 ~i~~~~~~-~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~i 95 (397)
T 1sq9_A 18 DIFSVSAC-N-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLF 95 (397)
T ss_dssp CEEEEEEC-S-SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEE
T ss_pred CeEEEEec-C-CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEE
Confidence 35666675 3 2222333455567887 3 57778899999999999999 9 99999999999999
Q ss_pred EECCCCcE-----EEEeCCC-----CceEEE--Ee----cCCCE-EEEEeCCCcEEEEEccc------CcceeeeccCCc
Q 009993 169 WHLEDGFS-----IASSKPL-----GCTIRA--VA----ADKKL-LVAGGTDGFIHCWRAVE------VLPHLFDISGSE 225 (520)
Q Consensus 169 wd~~~~~~-----~~~~~~~-----~~~v~~--~~----~~~~~-l~sg~~dg~i~vwd~~~------~~~~~~~~~~~~ 225 (520)
||+.+++. +..+..| ...|.+ ++ +++.. |++|+.||.|++||+.+ +....
T Consensus 96 w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------- 168 (397)
T 1sq9_A 96 YRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN------- 168 (397)
T ss_dssp EEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC-------
T ss_pred EEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceee-------
Confidence 99998887 8888887 466655 45 67999 99999999999999987 42111
Q ss_pred cccceEEe-------ccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee----e---ccCEEEEe--eCCC
Q 009993 226 KQNTQFRL-------WEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR----H---SDWVYGLA--PHDT 287 (520)
Q Consensus 226 ~~~~~~~~-------~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~----~---~~~v~~~~--~~~~ 287 (520)
......+ ..|...|.+++| ++ .+++++.||.|++||+++++.+..+. | ...|.++. +++.
T Consensus 169 -~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~ 246 (397)
T 1sq9_A 169 -WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 246 (397)
T ss_dssp -CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred -ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCC
Confidence 1111134 458999999999 56 99999999999999999999888886 4 88999887 7899
Q ss_pred EEEEEc-C---CeEEEEECCCCeeeEEeecc-------------cccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcc
Q 009993 288 TVASTS-G---SDVYIWDTNSGCLLTVVNGA-------------HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCT 350 (520)
Q Consensus 288 ~l~~~~-d---~~i~iwd~~~~~~~~~~~~~-------------~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~ 350 (520)
+|++++ | +.|++||+++++.+..+. + |...|.+++|+|++++|++++.||.|++||++++
T Consensus 247 ~l~~~~~d~~~g~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-- 323 (397)
T 1sq9_A 247 LLAIAHDSNSFGCITLYETEFGERIGSLS-VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-- 323 (397)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEEC-BC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--
T ss_pred EEEEEecCCCCceEEEEECCCCcccceec-cCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC--
Confidence 999998 8 999999999999988886 5 8999999999999999999999999999999988
Q ss_pred ccceeeeeeec------CC---------------cCCEEEEEecCC------------EEEEEeCCCcEEEEeCCcc
Q 009993 351 EANVLLVATWI------PH---------------TGPVNSLAFEFP------------WLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 351 ~~~~~~~~~~~------~h---------------~~~v~~l~~~~~------------~l~s~s~dg~i~vwd~~~~ 394 (520)
..+..+. +| ...|++++|+|+ +|++++.||.|++||+.++
T Consensus 324 ----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 324 ----ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp ----EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ----ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 6677777 77 999999999764 8999999999999999763
No 91
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.2e-31 Score=254.14 Aligned_cols=278 Identities=17% Similarity=0.221 Sum_probs=230.7
Q ss_pred hhhhhhcCCCCCCCCC-CCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 009993 106 EFYCERWGLPIASAPL-GAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS 180 (520)
Q Consensus 106 ~~~~~~~~~~~~~~~~-~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~ 180 (520)
.+.+..|. |+..... .+.+...++|+ +.+..+.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+
T Consensus 34 ~v~~~~~s-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 112 (369)
T 3zwl_B 34 PLTQVKYN-KEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW 112 (369)
T ss_dssp CEEEEEEC-TTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred eEEEEEEc-CCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 34566676 4444333 33355668897 557788999999999999999999999999999999999999988888
Q ss_pred CCCCceEEEEe--cCCCEEEEEeCC-----CcEEEEEcccCcceeeeccCCccccceEEeccCCC--CeEEEEE--cCCE
Q 009993 181 KPLGCTIRAVA--ADKKLLVAGGTD-----GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEG--PITSLAL--DLTR 249 (520)
Q Consensus 181 ~~~~~~v~~~~--~~~~~l~sg~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~--~~~~ 249 (520)
. +...+.++. +++.++++++.+ |.|.+||+.+......... ........+..|.. .+.+++| ++++
T Consensus 113 ~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (369)
T 3zwl_B 113 K-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTK--VSEEPIHKIITHEGLDAATVAGWSTKGKY 189 (369)
T ss_dssp E-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEE--ECSSCSEEEECCTTCCCEEEEEECGGGCE
T ss_pred e-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecc--cccceeeeccCCcCccceeEEEEcCCCCE
Confidence 7 666666554 999999999999 9999999977642111000 01123445556766 9999999 7789
Q ss_pred EEEEecCCeEEEEECCC-CcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEe
Q 009993 250 IYSGSWDMTVRVWDRAL-LKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLAR 324 (520)
Q Consensus 250 l~s~s~dg~v~iwd~~~-~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~ 324 (520)
+++++.||.|++||+++ .+.+..+. |...|.++. +++.+|++++ |+.|++||+++++.+..+. +...+.+++|
T Consensus 190 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~ 267 (369)
T 3zwl_B 190 IIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE--TDCPLNTAVI 267 (369)
T ss_dssp EEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEEEE
T ss_pred EEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec--CCCCceeEEe
Confidence 99999999999999998 67777776 888999887 7899999998 9999999999999988886 7889999999
Q ss_pred cCCCCEEEEEeCCC--------------eEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEE
Q 009993 325 SHTGDFLFTGGEDG--------------AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSL 388 (520)
Q Consensus 325 s~~~~~l~tg~~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~v 388 (520)
+|++.++++++.++ .+++||+.++ ..+..+.+|...|++++|+| ++|++++.||.|++
T Consensus 268 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i 341 (369)
T 3zwl_B 268 TPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE------EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRL 341 (369)
T ss_dssp CSSSSEEEEEECCC-------------CEEEEEETTTC------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred cCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC------cchhheecccCcEEEEEECCCCCEEEEEcCCCeEEE
Confidence 99999999999988 8999999988 67888899999999999976 69999999999999
Q ss_pred EeCCccc
Q 009993 389 IDVRKLL 395 (520)
Q Consensus 389 wd~~~~~ 395 (520)
|++.+..
T Consensus 342 w~~~~~~ 348 (369)
T 3zwl_B 342 HHFEKSY 348 (369)
T ss_dssp EEECHHH
T ss_pred EECcccc
Confidence 9998753
No 92
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=6.6e-32 Score=256.34 Aligned_cols=243 Identities=18% Similarity=0.190 Sum_probs=188.8
Q ss_pred eCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc----CCEEEEE
Q 009993 180 SKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD----LTRIYSG 253 (520)
Q Consensus 180 ~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~ 253 (520)
+.+|...|.++. +++++|++|+.|++|++||+.++. ......+.+|.+.|.+++|. +++|++|
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~-----------~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~ 77 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG-----------QILIADLRGHEGPVWQVAWAHPMYGNILASC 77 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE-----------EEEEEEEECCSSCEEEEEECCGGGSSCEEEE
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC-----------cEEEEEEcCCCccEEEEEeCCCCCCCEEEEE
Confidence 467888887765 899999999999999999987652 12345678999999999992 6899999
Q ss_pred ecCCeEEEEECCCCc--EEEEee-eccCEEEEe--eC--CCEEEEEc-CCeEEEEECCCCeee--EEeecccccceEEEE
Q 009993 254 SWDMTVRVWDRALLK--CLKVLR-HSDWVYGLA--PH--DTTVASTS-GSDVYIWDTNSGCLL--TVVNGAHVGNTKSLA 323 (520)
Q Consensus 254 s~dg~v~iwd~~~~~--~~~~~~-~~~~v~~~~--~~--~~~l~~~~-d~~i~iwd~~~~~~~--~~~~~~~~~~i~~l~ 323 (520)
+.|++|++||+++++ ....+. |...|.+++ |+ +.+|++++ |+.|++||++.+... .....+|...+.+++
T Consensus 78 s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~ 157 (316)
T 3bg1_A 78 SYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVS 157 (316)
T ss_dssp ETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCE
T ss_pred ECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEE
Confidence 999999999999874 445554 888999887 55 67899998 999999999876322 223347889999999
Q ss_pred ecCC-----------------CCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC------CEEEEE
Q 009993 324 RSHT-----------------GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF------PWLVSA 380 (520)
Q Consensus 324 ~s~~-----------------~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~------~~l~s~ 380 (520)
|+|+ +.+|++|+.|++|++||++... ...++..+.+|...|++++|+| .+|++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~---~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~ 234 (316)
T 3bg1_A 158 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG---QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASC 234 (316)
T ss_dssp ECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS---CEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEE
T ss_pred EccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC---ccceeeecccCCCceEEEEecCCCCCCCceEEEE
Confidence 9997 4689999999999999996541 1135667889999999999986 479999
Q ss_pred eCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEec--CCEEEEecCCCeEEEEeCC
Q 009993 381 AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVCGGEEGIVRIWNFS 451 (520)
Q Consensus 381 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~ 451 (520)
+.||+|++||+.+.... ......+.+|...|.++.++ +.+|++|+.||+|++|+..
T Consensus 235 s~D~~v~iw~~~~~~~~---------------~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 235 SQDGRVFIWTCDDASSN---------------TWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp ETTCEEEEEECSSTTCC---------------CCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred cCCCeEEEEEccCcccc---------------chhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 99999999998763110 01112234566677777765 4599999999999999975
No 93
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=7.3e-32 Score=261.36 Aligned_cols=271 Identities=15% Similarity=0.153 Sum_probs=218.1
Q ss_pred hhhhhhcCCC--CCC--CCCCCCCCCcccHH----Hhhhhhcc-----ccccEEEEEEccC----CCEEEEEeCCCeEEE
Q 009993 106 EFYCERWGLP--IAS--APLGAGFSDDKSWK----ELIDVLYG-----HTEAVLTVFVLAS----AKLLFTSGYDSIVRM 168 (520)
Q Consensus 106 ~~~~~~~~~~--~~~--~~~~~~~~~~~~W~----~~~~~l~~-----h~~~V~~l~~~~~----~~~l~sgs~dg~v~v 168 (520)
.+.+..|.+. +.. .....+....++|+ +.+..+.. |.+.|++++|+|+ +++|++|+.||.|++
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v 99 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRI 99 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEE
T ss_pred ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEE
Confidence 4566777621 112 22223344557887 33344443 5678999999998 679999999999999
Q ss_pred EECCCCcEEEEeCCCCceEEEEe--c-CCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEe---ccCCCCeEE
Q 009993 169 WHLEDGFSIASSKPLGCTIRAVA--A-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL---WEHEGPITS 242 (520)
Q Consensus 169 wd~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~ 242 (520)
||+.+++.+..+.+|...|.++. | ++.+|++|+.||.|++||+.++. ....+ .+|...|.+
T Consensus 100 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------------~~~~~~~~~~~~~~v~~ 166 (366)
T 3k26_A 100 INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT-------------LVAIFGGVEGHRDEVLS 166 (366)
T ss_dssp ECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE-------------EEEEECSTTSCSSCEEE
T ss_pred EEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe-------------EEEEecccccccCceeE
Confidence 99999999999999999988876 6 88999999999999999997753 33344 689999999
Q ss_pred EEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-----------------------------eccCEEEEeeCCCEEEE
Q 009993 243 LAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-----------------------------HSDWVYGLAPHDTTVAS 291 (520)
Q Consensus 243 l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-----------------------------~~~~v~~~~~~~~~l~~ 291 (520)
++| ++++|++++.||.|++||+++++....+. |...|.++...++++++
T Consensus 167 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 246 (366)
T 3k26_A 167 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILS 246 (366)
T ss_dssp EEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEE
T ss_pred EEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEE
Confidence 999 67899999999999999998876543322 78889999977999999
Q ss_pred Ec-CCeEEEEECCCCee--------------eEEeecccccceEEEEecCC--CCEEEEEeCCCeEEEEEcccCccccce
Q 009993 292 TS-GSDVYIWDTNSGCL--------------LTVVNGAHVGNTKSLARSHT--GDFLFTGGEDGAIHMYEIINDCTEANV 354 (520)
Q Consensus 292 ~~-d~~i~iwd~~~~~~--------------~~~~~~~~~~~i~~l~~s~~--~~~l~tg~~dg~i~iwd~~~~~~~~~~ 354 (520)
++ |+.|++||+.++.. +..+. +|...|++++|+|+ +.+|++|+.||.|++||+.++....
T Consensus 247 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-- 323 (366)
T 3k26_A 247 KSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD-YSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK-- 323 (366)
T ss_dssp ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE-CSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG--
T ss_pred EecCCEEEEEeCCCccccccccccCCcchheecccc-ccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc--
Confidence 99 99999999987643 55555 68889999999999 9999999999999999999874322
Q ss_pred eeeeeecCC--cCCEEEEEecC--CEEEEEeCCCcEEEEeCC
Q 009993 355 LLVATWIPH--TGPVNSLAFEF--PWLVSAAGDGKLSLIDVR 392 (520)
Q Consensus 355 ~~~~~~~~h--~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~ 392 (520)
.....+.+| ...|++++|+| ++|++++.||.|++||+.
T Consensus 324 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 324 AKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 134466677 79999999976 699999999999999985
No 94
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-31 Score=284.61 Aligned_cols=247 Identities=16% Similarity=0.140 Sum_probs=203.4
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECC--CCcEEEEeCCCCceEEEEe--cC--CCEEEEEeCCCcEEE
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLE--DGFSIASSKPLGCTIRAVA--AD--KKLLVAGGTDGFIHC 208 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~~~v~~~~--~~--~~~l~sg~~dg~i~v 208 (520)
+.++.||.+.|++++|+|++++|++|+.||+|+|||+. ++..+..+.+|...|.++. ++ +++|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 46789999999999999999999999999999999998 5577888999999998877 55 899999999999999
Q ss_pred EEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--c--CCEEEEEecCCeEEEEECCCCcEE--EEe-eeccCEEE
Q 009993 209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D--LTRIYSGSWDMTVRVWDRALLKCL--KVL-RHSDWVYG 281 (520)
Q Consensus 209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~--~~~l~s~s~dg~v~iwd~~~~~~~--~~~-~~~~~v~~ 281 (520)
||+.++. ......+.+|...|.+++| + ++.+++|+.||+|++||++++... ..+ .|...|.+
T Consensus 82 wd~~~~~-----------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~ 150 (753)
T 3jro_A 82 WKEENGR-----------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS 150 (753)
T ss_dssp EEEETTE-----------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEE
T ss_pred EECCCCc-----------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEE
Confidence 9997753 2245667789999999999 4 789999999999999999887332 222 38889999
Q ss_pred Ee--e-------------CCCEEEEEc-CCeEEEEECCCC----eeeEEeecccccceEEEEecCC---CCEEEEEeCCC
Q 009993 282 LA--P-------------HDTTVASTS-GSDVYIWDTNSG----CLLTVVNGAHVGNTKSLARSHT---GDFLFTGGEDG 338 (520)
Q Consensus 282 ~~--~-------------~~~~l~~~~-d~~i~iwd~~~~----~~~~~~~~~~~~~i~~l~~s~~---~~~l~tg~~dg 338 (520)
+. | ++..+++++ ||.|++||++++ .....+. +|...|++++|+|+ +.++++|+.||
T Consensus 151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~~~l~s~s~Dg 229 (753)
T 3jro_A 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYLASVSQDR 229 (753)
T ss_dssp EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEESSS
T ss_pred EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec-CCCCcEEEEEeccCCCCCCEEEEEecCC
Confidence 88 4 477888888 999999999887 4445554 69999999999999 89999999999
Q ss_pred eEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993 339 AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~ 394 (520)
.|++||++++..... ........|...|++++|+| .+|++|+.||.|++||+...
T Consensus 230 ~I~iwd~~~~~~~~~-~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 230 TCIIWTQDNEQGPWK-KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp CEEEEEESSSSSCCB-CCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred EEEEecCCCCCCcce-eEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 999999988632111 23444556889999999976 69999999999999999864
No 95
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-31 Score=249.54 Aligned_cols=261 Identities=16% Similarity=0.162 Sum_probs=219.4
Q ss_pred hhhhhcCCCCCCC-CCCCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC---cEEE
Q 009993 107 FYCERWGLPIASA-PLGAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG---FSIA 178 (520)
Q Consensus 107 ~~~~~~~~~~~~~-~~~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~---~~~~ 178 (520)
+.+..| |.... ...+.+...++|+ .....+.+|.+.|.+++|+|++++|++|+.||.|++|++... +.+.
T Consensus 21 v~~~~~--~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~ 98 (313)
T 3odt_A 21 VRDVVA--VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLY 98 (313)
T ss_dssp EEEEEE--EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-C
T ss_pred cEEEEe--cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCccc
Confidence 455555 33333 2333455568898 456778899999999999999999999999999999998654 5677
Q ss_pred EeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEec
Q 009993 179 SSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSW 255 (520)
Q Consensus 179 ~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~ 255 (520)
.+.+|...+.++..+++.+++|+.||.|++||. ......+..|...|.++.+ +++.+++++.
T Consensus 99 ~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~---------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 163 (313)
T 3odt_A 99 TLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKE---------------GSLVYNLQAHNASVWDAKVVSFSENKFLTASA 163 (313)
T ss_dssp EECCCSSCEEEEEEETTEEEEEETTSEEEEEET---------------TEEEEEEECCSSCEEEEEEEETTTTEEEEEET
T ss_pred chhhcccCEEEEEecCCEEEEEeCCCCEEEEcC---------------CcEEEecccCCCceeEEEEccCCCCEEEEEEC
Confidence 888999999999999999999999999999992 2255667789999999998 6799999999
Q ss_pred CCeEEEEECCCCcEEEEee--eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCE
Q 009993 256 DMTVRVWDRALLKCLKVLR--HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDF 330 (520)
Q Consensus 256 dg~v~iwd~~~~~~~~~~~--~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 330 (520)
||.|++|| ..+....+. +...+.++. +++. +++++ |+.|++||+++++.+..+. +|...|++++|+|++ .
T Consensus 164 d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~-~ 238 (313)
T 3odt_A 164 DKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE-GHESFVYCIKLLPNG-D 238 (313)
T ss_dssp TSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTS-C
T ss_pred CCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh-cCCceEEEEEEecCC-C
Confidence 99999999 445555554 888898887 6777 66666 9999999999999998887 699999999999999 5
Q ss_pred EEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCC-EEEEEeCCCcEEEEeCCccc
Q 009993 331 LFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP-WLVSAAGDGKLSLIDVRKLL 395 (520)
Q Consensus 331 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~ 395 (520)
+++++.||.|++||++++ ..+..+..|...|++++|+|+ .+++++.||.|++||+++..
T Consensus 239 l~~~~~dg~v~iwd~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 239 IVSCGEDRTVRIWSKENG------SLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp EEEEETTSEEEEECTTTC------CEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGG
T ss_pred EEEEecCCEEEEEECCCC------ceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCc
Confidence 889999999999999998 678888899999999999763 57889999999999998754
No 96
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.5e-31 Score=257.35 Aligned_cols=277 Identities=16% Similarity=0.158 Sum_probs=221.2
Q ss_pred hhhhhcCCCCCCCCCC-CCCCCcccHH----H--hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 009993 107 FYCERWGLPIASAPLG-AGFSDDKSWK----E--LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIAS 179 (520)
Q Consensus 107 ~~~~~~~~~~~~~~~~-~~~~~~~~W~----~--~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~ 179 (520)
+.+..|. |+...... +.....++|+ + .+..+.+|.+.|++++|+|++++|++|+.||.|++||+.+++....
T Consensus 11 i~~~~~s-~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 89 (372)
T 1k8k_C 11 ISCHAWN-KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT 89 (372)
T ss_dssp CCEEEEC-TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred eEEEEEC-CCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeee
Confidence 4566676 45444333 3455568887 2 6778899999999999999999999999999999999988875444
Q ss_pred --eCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEE
Q 009993 180 --SKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSG 253 (520)
Q Consensus 180 --~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~ 253 (520)
+..|...+.++. +++++|++|+.||.|++||+.++... ........+|...|.+++| ++++++++
T Consensus 90 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 160 (372)
T 1k8k_C 90 LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW---------WVCKHIKKPIRSTVLSLDWHPNSVLLAAG 160 (372)
T ss_dssp EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE---------EEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcc---------eeeeeeecccCCCeeEEEEcCCCCEEEEE
Confidence 366777777665 89999999999999999999776311 0122233678999999999 67899999
Q ss_pred ecCCeEEEEEC------------------CCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEe
Q 009993 254 SWDMTVRVWDR------------------ALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVV 311 (520)
Q Consensus 254 s~dg~v~iwd~------------------~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~ 311 (520)
+.||.|++||+ .+++.+..+. |...|.++. +++.++++++ |+.|++||+++++.+..+
T Consensus 161 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 240 (372)
T 1k8k_C 161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL 240 (372)
T ss_dssp ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE
Confidence 99999999995 4677888775 888899887 7888999998 999999999999999888
Q ss_pred ecccccceEEEEecCCCCEEEEEeCCCeEEEEEccc--Ccc--c------------------------cceeee------
Q 009993 312 NGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIN--DCT--E------------------------ANVLLV------ 357 (520)
Q Consensus 312 ~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~--~~~--~------------------------~~~~~~------ 357 (520)
. .|...|.+++|+|++.++++| .|+.|++|++.. +.. . ......
T Consensus 241 ~-~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (372)
T 1k8k_C 241 A-SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG 318 (372)
T ss_dssp E-CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------
T ss_pred c-cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccc
Confidence 7 588899999999999988887 999999999988 310 0 000010
Q ss_pred eee-cCCcCCEEEEEec-C-----CEEEEEeCCCcEEEEeCCccc
Q 009993 358 ATW-IPHTGPVNSLAFE-F-----PWLVSAAGDGKLSLIDVRKLL 395 (520)
Q Consensus 358 ~~~-~~h~~~v~~l~~~-~-----~~l~s~s~dg~i~vwd~~~~~ 395 (520)
..+ .+|..+|++++|. + .+|++|+.||.|++||+++..
T Consensus 319 ~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 319 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 223 4899999999963 3 699999999999999998753
No 97
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.6e-32 Score=265.06 Aligned_cols=272 Identities=13% Similarity=0.060 Sum_probs=205.4
Q ss_pred hhhhhcCCCCCCCCC-CCCCCCcccHH------HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc---E
Q 009993 107 FYCERWGLPIASAPL-GAGFSDDKSWK------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF---S 176 (520)
Q Consensus 107 ~~~~~~~~~~~~~~~-~~~~~~~~~W~------~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~---~ 176 (520)
+.|..|. |+..... .+.+...++|+ +....+.+|.+.|++++|+|++++|++|+.|++|++||+.++. .
T Consensus 14 v~~~~~s-~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~ 92 (377)
T 3dwl_C 14 SYEHAFN-SQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQ 92 (377)
T ss_dssp CSCCEEC-SSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCC
T ss_pred EEEEEEC-CCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceee
Confidence 4567776 4544433 33466678887 3567889999999999999999999999999999999999887 6
Q ss_pred EEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEecc-CCCCeEEEEE--cCCEEE
Q 009993 177 IASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE-HEGPITSLAL--DLTRIY 251 (520)
Q Consensus 177 ~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~--~~~~l~ 251 (520)
...+.+|...|.++. +++++|++|+.|+.|++||+.++.. ......+.+ |...|.+++| ++++|+
T Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----------~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 162 (377)
T 3dwl_C 93 TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND----------WWVSKHLKRPLRSTILSLDWHPNNVLLA 162 (377)
T ss_dssp EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC---------------CCCCEEECSSCCSCEEEEEECTTSSEEE
T ss_pred eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc----------ceeeeEeecccCCCeEEEEEcCCCCEEE
Confidence 777888999888876 8899999999999999999877531 113455666 9999999999 678999
Q ss_pred EEecCCeEEEEECC------------------CCcEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCee---
Q 009993 252 SGSWDMTVRVWDRA------------------LLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCL--- 307 (520)
Q Consensus 252 s~s~dg~v~iwd~~------------------~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~--- 307 (520)
+++.|++|++||++ .++++..+.|...|.++. |++++|++++ |+.|++||+++++.
T Consensus 163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~ 242 (377)
T 3dwl_C 163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR 242 (377)
T ss_dssp EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE
T ss_pred EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce
Confidence 99999999999985 344555556888899887 8899999988 99999999999877
Q ss_pred -eEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccc--cc----------------------ee-------
Q 009993 308 -LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE--AN----------------------VL------- 355 (520)
Q Consensus 308 -~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~--~~----------------------~~------- 355 (520)
+..+. +|...|.+++|+|++++|++|+.|+.+ +|+....... .. ..
T Consensus 243 ~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (377)
T 3dwl_C 243 ALITVK-LSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTAL 320 (377)
T ss_dssp ECCCEE-CSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---------
T ss_pred eeEeec-CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccc
Confidence 66665 699999999999999999999877766 6666522100 00 00
Q ss_pred ---------------eeeeecCCcCCEEEEEecC---C---EEEEEeCCCcEEEEeC
Q 009993 356 ---------------LVATWIPHTGPVNSLAFEF---P---WLVSAAGDGKLSLIDV 391 (520)
Q Consensus 356 ---------------~~~~~~~h~~~v~~l~~~~---~---~l~s~s~dg~i~vwd~ 391 (520)
.......|...|+++.+.+ . .|+||+.||.|++||+
T Consensus 321 ~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 321 RSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ----------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0011123999999999743 2 6999999999999985
No 98
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=7.9e-31 Score=256.16 Aligned_cols=294 Identities=11% Similarity=0.117 Sum_probs=210.5
Q ss_pred ECCCCcEEEEeCCCCceEEEEe--cCC-CEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc
Q 009993 170 HLEDGFSIASSKPLGCTIRAVA--ADK-KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD 246 (520)
Q Consensus 170 d~~~~~~~~~~~~~~~~v~~~~--~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 246 (520)
++.+......+.+|...|.++. +++ ++|++|+.||.|++||+.++.. .......+|...|.+++|.
T Consensus 59 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~~~~h~~~v~~~~~~ 127 (383)
T 3ei3_B 59 SLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK-----------TSFIQGMGPGDAITGMKFN 127 (383)
T ss_dssp HHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC-----------EEEECCCSTTCBEEEEEEE
T ss_pred cccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc-----------ceeeecCCcCCceeEEEeC
Confidence 3345556667788888888776 787 8999999999999999986531 1222334799999999994
Q ss_pred ---CCEEEEEecCCeEEEEECCCCcEEEEee----eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccc
Q 009993 247 ---LTRIYSGSWDMTVRVWDRALLKCLKVLR----HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHV 316 (520)
Q Consensus 247 ---~~~l~s~s~dg~v~iwd~~~~~~~~~~~----~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~ 316 (520)
+++|++++.|++|++||+++ ..+..+. +...|.++. ++++++++++ |+.|++||+ +++.+..+. +|.
T Consensus 128 ~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~-~h~ 204 (383)
T 3ei3_B 128 QFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEK-LHK 204 (383)
T ss_dssp TTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEE-CSS
T ss_pred CCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEec-cCC
Confidence 47899999999999999986 4444443 347788877 8899999999 999999999 567777776 699
Q ss_pred cceEEEEecCCCC-EEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCC
Q 009993 317 GNTKSLARSHTGD-FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVR 392 (520)
Q Consensus 317 ~~i~~l~~s~~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~ 392 (520)
..|.+++|+|++. ++++|+.|+.|++||+++..... ..+..+ +|...|++++|+| .+|++++.|+.|++||++
T Consensus 205 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~ 281 (383)
T 3ei3_B 205 AKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN--SYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY 281 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTT--CEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETT
T ss_pred CcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCccc--ceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECC
Confidence 9999999999999 99999999999999999843211 344444 6999999999977 699999999999999998
Q ss_pred cccccCCCCCCCceeeeeecCCCcccccCcceee--EEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccch
Q 009993 393 KLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNL--LSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLEN 470 (520)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 470 (520)
+............. .................+ .++++++.+ +|+.||.|++||+.++..+......
T Consensus 282 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~-------- 349 (383)
T 3ei3_B 282 DWSKPDQIIIHPHR--QFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDP-------- 349 (383)
T ss_dssp BTTSCSEEEECCBC--CCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBT--------
T ss_pred CCcccccccccccc--ccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCC--------
Confidence 76433211100000 000000000000011122 334445555 8899999999999887653322110
Q ss_pred hhhhccceeeeccCCCcccccc
Q 009993 471 RMRRRKLQTEMSSKGGRTDQCS 492 (520)
Q Consensus 471 ~~~~~~~~~~~s~~g~~~~~~s 492 (520)
........++|+|+|+.+++++
T Consensus 350 ~~~~~~~~~~~s~~g~~l~s~s 371 (383)
T 3ei3_B 350 NAAGIISLNKFSPTGDVLASGM 371 (383)
T ss_dssp TBCSCCCEEEECTTSSEEEEEE
T ss_pred CCCceEEEEEEecCccEEEEec
Confidence 1122345569999999998874
No 99
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1e-31 Score=263.71 Aligned_cols=299 Identities=7% Similarity=-0.040 Sum_probs=217.9
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcc
Q 009993 139 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLP 216 (520)
Q Consensus 139 ~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~ 216 (520)
+.-...|.+++|+|||+++||++.|++|+ |...++. +.+|...|.++. |+| .++.+.+|+....
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~---l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~-- 77 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD---INCNSKNLFHVKEFPLE-------FENKLDFELAQQN-- 77 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC---CSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS--
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceee--cccccce---ecCCCccEEEEEECCCC-------CcceEEEEeCCCc--
Confidence 34568899999999999999999999999 7655544 468888777665 777 4566555553221
Q ss_pred eeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeecc-----CEEEEe--eCCC
Q 009993 217 HLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSD-----WVYGLA--PHDT 287 (520)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-----~v~~~~--~~~~ 287 (520)
....+ .|...|.+++| +|.+|++++.||+|++||..+ ++..+.|.. .|.+++ |+|+
T Consensus 78 ------------~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~ 142 (588)
T 2j04_A 78 ------------GLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIES 142 (588)
T ss_dssp ------------CSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSS
T ss_pred ------------eEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCC
Confidence 11111 45789999999 889999999999999999654 555555443 488877 9999
Q ss_pred EEEEEc-CCeEEEEECCCCee-------eEEee---cccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceee
Q 009993 288 TVASTS-GSDVYIWDTNSGCL-------LTVVN---GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL 356 (520)
Q Consensus 288 ~l~~~~-d~~i~iwd~~~~~~-------~~~~~---~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~ 356 (520)
+|++|+ ||+|++||+.++.. +..+. .+|...|.+++|+|+| +++++.|++|++||+.++... ..
T Consensus 143 ~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~---~~ 217 (588)
T 2j04_A 143 SIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ---PV 217 (588)
T ss_dssp CEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC---CC
T ss_pred EEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc---cc
Confidence 999999 99999999998852 55653 4688899999999999 888999999999999887310 12
Q ss_pred eeee-cCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEe--cC
Q 009993 357 VATW-IPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--GA 433 (520)
Q Consensus 357 ~~~~-~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~ 433 (520)
..++ .+|...|.+++|+++.|++++ +++|++||+.+... .....+|...+..+.+ ++
T Consensus 218 ~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~-------------------~~~~~gh~~~V~~va~~~s~ 277 (588)
T 2j04_A 218 SRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYSI-------------------SSLKTGSLENFHIIPLNHEK 277 (588)
T ss_dssp EEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTEE-------------------EEEECSCCSCCCEEEETTCS
T ss_pred eeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCeE-------------------EEEEcCCCceEEEEEeeeCC
Confidence 3455 478899999999878999887 69999999987421 1112367777777766 55
Q ss_pred C--EEEEecCCCeEEEEeCC-----c-hHhHHHHhhhh-------cccccchhhhhccceeeeccCCCccccccc
Q 009993 434 D--RIVCGGEEGIVRIWNFS-----Q-AFEIERRARAL-------RGIRLENRMRRRKLQTEMSSKGGRTDQCSV 493 (520)
Q Consensus 434 ~--~l~sg~~Dg~v~iwd~~-----~-~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~ 493 (520)
+ .++++++||+ ++|.+. . +..+....... ......+. ...+..++|||||..+|+++-
T Consensus 278 d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 278 ESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp SCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred CCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 4 8999999999 999973 1 11111110000 00000111 233677999999999888754
No 100
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.98 E-value=1.1e-31 Score=266.85 Aligned_cols=301 Identities=14% Similarity=0.142 Sum_probs=200.1
Q ss_pred CCCCceEEEEe--c-CCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEe
Q 009993 181 KPLGCTIRAVA--A-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGS 254 (520)
Q Consensus 181 ~~~~~~v~~~~--~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s 254 (520)
.+|...|++++ | ++++||+|+.||.|+|||+.++. ......+.+|.+.|++++| ++++|++|+
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~-----------~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s 184 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD-----------KPTFIKGIGAGGSITGLKFNPLNTNQFYASS 184 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS-----------CCEEECCCSSSCCCCEEEECSSCTTEEEEEC
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC-----------ceeEEEccCCCCCEEEEEEeCCCCCEEEEEe
Confidence 34555666665 5 56799999999999999987653 2234456789999999999 468999999
Q ss_pred cCCeEEEEECCCCcEEEEee---eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCC
Q 009993 255 WDMTVRVWDRALLKCLKVLR---HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG 328 (520)
Q Consensus 255 ~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~ 328 (520)
.||+|++||++++....... +...+.++. +++.+|++|+ ||.|++||++. +.+..+. +|...|++++|+|++
T Consensus 185 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~-~h~~~v~~v~~~p~~ 262 (435)
T 4e54_B 185 MEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLR-MHKKKVTHVALNPCC 262 (435)
T ss_dssp SSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSB-CCSSCEEEEEECTTC
T ss_pred CCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEe-cccceEEeeeecCCC
Confidence 99999999998765443333 233455554 8999999999 99999999875 4455555 699999999999987
Q ss_pred C-EEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCc
Q 009993 329 D-FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKR 405 (520)
Q Consensus 329 ~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 405 (520)
. ++++|+.|+.|++||+++.... .......+|...|++++|+| .+|++++.||.|+|||+.++...........
T Consensus 263 ~~~~~s~s~d~~v~iwd~~~~~~~---~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~ 339 (435)
T 4e54_B 263 DWFLATASVDQTVKIWDLRQVRGK---ASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPH 339 (435)
T ss_dssp SSEEEEEETTSBCCEEETTTCCSS---SCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCC
T ss_pred ceEEEEecCcceeeEEeccccccc---ceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccc
Confidence 6 7889999999999999887322 22334468999999999976 6999999999999999987533221111100
Q ss_pred eeeeeecCCCcccccCccee--eEEEEecCC-EEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhcccee-ee
Q 009993 406 VSRVIEVEPPQRMLHGFECN--LLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQT-EM 481 (520)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 481 (520)
.. ................ +.+..+++. .++++..++.|++||..++..+.... ......+..+ +|
T Consensus 340 ~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~---------~~~~~~v~s~~~f 408 (435)
T 4e54_B 340 RH--FQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY---------DPESSGISSLNEF 408 (435)
T ss_dssp CC--CSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC---------CSSCCCCCCEEEE
T ss_pred cc--cccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe---------CCCCCcEEEEEEE
Confidence 00 0000000000011111 222223344 33444456789999999876543221 1122233444 79
Q ss_pred ccCCCcccccccccccCCCCCCcceeeecccCCCCc
Q 009993 482 SSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMSGK 517 (520)
Q Consensus 482 s~~g~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (520)
+|+|..+++++ + ++..||..+.+..+|
T Consensus 409 spdg~~lasg~--------d-~~i~iW~~~~gk~rK 435 (435)
T 4e54_B 409 NPMGDTLASAM--------G-YHILIWSQQEARTRK 435 (435)
T ss_dssp CTTSSCEEEEC--------S-SEEEECCCC------
T ss_pred CCCCCEEEEEc--------C-CcEEEEECCcCeeeC
Confidence 99999987653 1 235799876554443
No 101
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=2.5e-30 Score=254.34 Aligned_cols=279 Identities=13% Similarity=0.138 Sum_probs=215.6
Q ss_pred EEEEEEccCCCE-EEEEeCCCeEEEEECCCCc----EEEEeCCCCceEEEEe--c-CCCEEEEEeCCCcEEEEEcccCcc
Q 009993 145 VLTVFVLASAKL-LFTSGYDSIVRMWHLEDGF----SIASSKPLGCTIRAVA--A-DKKLLVAGGTDGFIHCWRAVEVLP 216 (520)
Q Consensus 145 V~~l~~~~~~~~-l~sgs~dg~v~vwd~~~~~----~~~~~~~~~~~v~~~~--~-~~~~l~sg~~dg~i~vwd~~~~~~ 216 (520)
...++++|+... +++|+.||.|+||++.... .+..+.+|...|.++. + ++++|++|+.||.|++||+.++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 345788887654 4457899999999996652 3445778999998876 6 889999999999999999987631
Q ss_pred eeeeccCCccccceEEeccCCCCeEEEEE--cC-CEEEEEecCCeEEEEECCCCcEEEEe--e-eccCEEEEe--eCCCE
Q 009993 217 HLFDISGSEKQNTQFRLWEHEGPITSLAL--DL-TRIYSGSWDMTVRVWDRALLKCLKVL--R-HSDWVYGLA--PHDTT 288 (520)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~s~s~dg~v~iwd~~~~~~~~~~--~-~~~~v~~~~--~~~~~ 288 (520)
.. ........+.+|...|.+++| ++ ++|++++.||+|++||+++++.+..+ . |...|.++. +++.+
T Consensus 117 ~~------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 190 (402)
T 2aq5_A 117 VL------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL 190 (402)
T ss_dssp SS------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC
T ss_pred cc------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE
Confidence 10 011356678899999999999 44 68999999999999999999999888 4 889999988 78999
Q ss_pred EEEEc-CCeEEEEECCCCeeeEEeecccccc-eEEEEecCCCCEEEEE---eCCCeEEEEEcccCccccceeeeeeecCC
Q 009993 289 VASTS-GSDVYIWDTNSGCLLTVVNGAHVGN-TKSLARSHTGDFLFTG---GEDGAIHMYEIINDCTEANVLLVATWIPH 363 (520)
Q Consensus 289 l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~-i~~l~~s~~~~~l~tg---~~dg~i~iwd~~~~~~~~~~~~~~~~~~h 363 (520)
|++++ |+.|++||+++++.+..+..+|.+. +.++.|+|++.+|++| +.|+.|++||+++.... .......|
T Consensus 191 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~----~~~~~~~~ 266 (402)
T 2aq5_A 191 ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP----LSLQELDT 266 (402)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC----SEEEECCC
T ss_pred EEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC----ceEEeccC
Confidence 99988 9999999999999998884467765 8999999999999999 79999999999887421 11122357
Q ss_pred cCCEEEEEecC--CEEE-EEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccC--cceeeEEEEecCC--EE
Q 009993 364 TGPVNSLAFEF--PWLV-SAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG--FECNLLSVDIGAD--RI 436 (520)
Q Consensus 364 ~~~v~~l~~~~--~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~--~l 436 (520)
...+.+++|+| .+|+ +|+.||.|++||+.+... ....+.. |...+.++.+.++ ++
T Consensus 267 ~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~------------------~~~~l~~~~~~~~v~~~~~sp~~~~~ 328 (402)
T 2aq5_A 267 SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP------------------FLHYLSMFSSKESQRGMGYMPKRGLE 328 (402)
T ss_dssp CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT------------------CEEEEEEECCSSCCSEEEECCGGGSC
T ss_pred CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc------------------ceEeecccccCCcccceEEecccccc
Confidence 77899999976 4665 566799999999987421 1111222 3355666666655 54
Q ss_pred EEecCCCeEEEEeCCch
Q 009993 437 VCGGEEGIVRIWNFSQA 453 (520)
Q Consensus 437 ~sg~~Dg~v~iwd~~~~ 453 (520)
+ +.|+.+++|++.++
T Consensus 329 ~--s~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 329 V--NKCEIARFYKLHER 343 (402)
T ss_dssp G--GGTEEEEEEEEETT
T ss_pred e--ecceeEEEEEcCCC
Confidence 4 45679999999864
No 102
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=256.13 Aligned_cols=318 Identities=17% Similarity=0.171 Sum_probs=231.2
Q ss_pred CCeEEEEECCCCcEEEEeCCCCceEEEEe--c-CCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCC
Q 009993 163 DSIVRMWHLEDGFSIASSKPLGCTIRAVA--A-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGP 239 (520)
Q Consensus 163 dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 239 (520)
++.+++|+++.++....+.+|...|.++. | ++++|++|+.||.|++||+.++....................+|...
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence 45678888888888888899999998876 7 89999999999999999998764211000000000000011359999
Q ss_pred eEEEEE---cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--e---CCCEEEEEc-CCeEEEEECCCCeeeEE
Q 009993 240 ITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--P---HDTTVASTS-GSDVYIWDTNSGCLLTV 310 (520)
Q Consensus 240 v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~---~~~~l~~~~-d~~i~iwd~~~~~~~~~ 310 (520)
|.+++| ++.++++++.||.|++||+.+++....+.+...+.++. + ++.++++++ ++.|++||+++++.+..
T Consensus 102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~ 181 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI 181 (408)
T ss_dssp EEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE
T ss_pred EEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee
Confidence 999999 44689999999999999999999999998888888877 3 455888888 99999999999998888
Q ss_pred eecccccceEEEEecCCCC-EEEEEeCCCeEEEEEcccCcccc----------ceeeeeeecCCcCCEEEEEecC--CEE
Q 009993 311 VNGAHVGNTKSLARSHTGD-FLFTGGEDGAIHMYEIINDCTEA----------NVLLVATWIPHTGPVNSLAFEF--PWL 377 (520)
Q Consensus 311 ~~~~~~~~i~~l~~s~~~~-~l~tg~~dg~i~iwd~~~~~~~~----------~~~~~~~~~~h~~~v~~l~~~~--~~l 377 (520)
+. +|...|.+++|+|++. ++++|+.||.|++||++...... .........+|...|++++|+| .+|
T Consensus 182 ~~-~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 260 (408)
T 4a11_B 182 LQ-GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL 260 (408)
T ss_dssp EC-CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEE
T ss_pred ec-CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEE
Confidence 87 6999999999999998 58999999999999998764110 0011222367899999999976 699
Q ss_pred EEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEE-ecCCEEEEecCCCeEEEEeCCchHhH
Q 009993 378 VSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVD-IGADRIVCGGEEGIVRIWNFSQAFEI 456 (520)
Q Consensus 378 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~l~sg~~Dg~v~iwd~~~~~~~ 456 (520)
++++.||.|++||+.++........... . ........... .....+++++.||.|++||+.++..+
T Consensus 261 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 327 (408)
T 4a11_B 261 LTVGTDNRMRLWNSSNGENTLVNYGKVC------------N-NSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI 327 (408)
T ss_dssp EEEETTSCEEEEETTTCCBCCCCCCCCC------------C-CCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE
T ss_pred EEecCCCeEEEEECCCCccceecccccc------------c-cccccceeEEecCCCceEEEEecCCEEEEEECcCCcce
Confidence 9999999999999998643322111100 0 00111111222 22347777788999999999887544
Q ss_pred HHHhhhhcccccchhhhhccceeeeccCCCcccccccccccCCCCCCcceeeeccc
Q 009993 457 ERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKR 512 (520)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~~~~~~~~~~~~~~~~~~~ 512 (520)
... ..+...+..++|+|+|..+++++.+. ...+|....
T Consensus 328 ~~~----------~~~~~~v~~~~~s~~~~~l~s~~~dg--------~i~iw~~~~ 365 (408)
T 4a11_B 328 TML----------KGHYKTVDCCVFQSNFQELYSGSRDC--------NILAWVPSL 365 (408)
T ss_dssp EEE----------CCCSSCEEEEEEETTTTEEEEEETTS--------CEEEEEECC
T ss_pred eee----------ccCCCeEEEEEEcCCCCEEEEECCCC--------eEEEEeCCC
Confidence 221 22345578999999999999877532 246777643
No 103
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.7e-29 Score=245.86 Aligned_cols=250 Identities=18% Similarity=0.192 Sum_probs=197.7
Q ss_pred cEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc----CC
Q 009993 175 FSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD----LT 248 (520)
Q Consensus 175 ~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~ 248 (520)
+.+..+.+|...|.++. +++++|++|+.||.|++||+.... ......+.+|...|++++|. ++
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~ 70 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----------HKLIDTLTGHEGPVWRVDWAHPKFGT 70 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-----------EEEEEEECCCSSCEEEEEECCGGGCS
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-----------ceeeeEecCCCCcEEEEEeCCCCCCC
Confidence 45667788999888776 899999999999999999987432 23556778999999999993 78
Q ss_pred EEEEEecCCeEEEEECCCCc--EEEEee-eccCEEEEe--eC--CCEEEEEc-CCeEEEEECCCCee--eEEeecccccc
Q 009993 249 RIYSGSWDMTVRVWDRALLK--CLKVLR-HSDWVYGLA--PH--DTTVASTS-GSDVYIWDTNSGCL--LTVVNGAHVGN 318 (520)
Q Consensus 249 ~l~s~s~dg~v~iwd~~~~~--~~~~~~-~~~~v~~~~--~~--~~~l~~~~-d~~i~iwd~~~~~~--~~~~~~~~~~~ 318 (520)
+|++|+.||.|++||+.+++ .+..+. |...|.++. ++ +.++++++ |+.|++||++++.. ...+. +|...
T Consensus 71 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~ 149 (379)
T 3jrp_A 71 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIG 149 (379)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE-CCTTC
T ss_pred EEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEec-CCCCc
Confidence 99999999999999999987 555554 888999988 66 78899988 99999999998733 33333 68999
Q ss_pred eEEEEecC-------------CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-----CEEEEE
Q 009993 319 TKSLARSH-------------TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-----PWLVSA 380 (520)
Q Consensus 319 i~~l~~s~-------------~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~l~s~ 380 (520)
|.+++|+| ++.++++|+.||.|++||++++... ......+.+|...|++++|+| .+|+++
T Consensus 150 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~ 227 (379)
T 3jrp_A 150 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 227 (379)
T ss_dssp EEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred eEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc--eeeEEEEecccCcEeEEEECCCCCCCCeEEEE
Confidence 99999999 6999999999999999999876321 235667889999999999975 489999
Q ss_pred eCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEe--cCCEEEEecCCCeEEEEeCCc
Q 009993 381 AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--GADRIVCGGEEGIVRIWNFSQ 452 (520)
Q Consensus 381 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~~Dg~v~iwd~~~ 452 (520)
+.||.|++||+++..... .........|...+.++.+ ++.+|++++.||.|++|++..
T Consensus 228 ~~dg~i~iwd~~~~~~~~--------------~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 228 SQDRTCIIWTQDNEQGPW--------------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp ETTSCEEEEEESSTTSCC--------------EEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred eCCCEEEEEeCCCCCccc--------------eeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 999999999998742110 0001112335556665555 556999999999999999874
No 104
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=252.71 Aligned_cols=288 Identities=11% Similarity=0.124 Sum_probs=203.9
Q ss_pred CCceEEEE--ecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCC------------CCeEEEEE--c
Q 009993 183 LGCTIRAV--AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE------------GPITSLAL--D 246 (520)
Q Consensus 183 ~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~l~~--~ 246 (520)
+...|.++ ++++++|++|+.||.|++||+.++..... ...........+.+|. ..|.+++| +
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS--HSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----C--CCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc--ccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 45566655 49999999999999999999987631100 0011122456777898 88999999 4
Q ss_pred C--CEEEEEecCCeEEEEECCCCcEE---------------------------------------EEe--eeccCEEEEe
Q 009993 247 L--TRIYSGSWDMTVRVWDRALLKCL---------------------------------------KVL--RHSDWVYGLA 283 (520)
Q Consensus 247 ~--~~l~s~s~dg~v~iwd~~~~~~~---------------------------------------~~~--~~~~~v~~~~ 283 (520)
+ ..+++++.|++|++||+.++... ..+ .|...|.++.
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 4 68999999999999998765432 122 3888888887
Q ss_pred --eCCCEEEEEcCCeEEEEECCC-CeeeEEe------ecccccceEEEEecCCC-CEEEEEeCCCeEEEEEcccCccccc
Q 009993 284 --PHDTTVASTSGSDVYIWDTNS-GCLLTVV------NGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEAN 353 (520)
Q Consensus 284 --~~~~~l~~~~d~~i~iwd~~~-~~~~~~~------~~~~~~~i~~l~~s~~~-~~l~tg~~dg~i~iwd~~~~~~~~~ 353 (520)
+++++++++.|+.|++||+++ ++.+..+ ..+|...|++++|+|++ .+|++|+.||.|++||++++....
T Consensus 185 ~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~- 263 (447)
T 3dw8_B 185 INSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD- 263 (447)
T ss_dssp ECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC-
T ss_pred EcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc-
Confidence 889999998899999999994 4444432 23689999999999998 999999999999999999873110
Q ss_pred eeeeeeecCCcC------------CEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccc
Q 009993 354 VLLVATWIPHTG------------PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML 419 (520)
Q Consensus 354 ~~~~~~~~~h~~------------~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (520)
..+..+.+|.. .|++++|+| .+|++++. +.|++||+++.. .+...+
T Consensus 264 -~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~------------------~~~~~~ 323 (447)
T 3dw8_B 264 -RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN------------------RPVETY 323 (447)
T ss_dssp -TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS------------------SCSCCE
T ss_pred -ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc------------------ccccee
Confidence 11566777775 999999976 68999998 999999998621 111222
Q ss_pred cCcce-----------------eeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhh--hhcccc-------------
Q 009993 420 HGFEC-----------------NLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRAR--ALRGIR------------- 467 (520)
Q Consensus 420 ~~~~~-----------------~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~--~~~~~~------------- 467 (520)
.+|.. ...++++++.+|++|+.||.|++||+.++..+.-... ..+...
T Consensus 324 ~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (447)
T 3dw8_B 324 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKR 403 (447)
T ss_dssp ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCC
T ss_pred eccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCc
Confidence 22321 1256777788999999999999999998765310000 000000
Q ss_pred -------cchhhhhccceeeeccCCCccccccc
Q 009993 468 -------LENRMRRRKLQTEMSSKGGRTDQCSV 493 (520)
Q Consensus 468 -------~~~~~~~~~~~~~~s~~g~~~~~~s~ 493 (520)
..-.....+..++|+|+|..+++++.
T Consensus 404 ~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~ 436 (447)
T 3dw8_B 404 KKDEISVDSLDFNKKILHTAWHPKENIIAVATT 436 (447)
T ss_dssp CTTCEEGGGCCTTSCCCEEEECSSSSEEEEECS
T ss_pred ccccccccccccCCceeEEEECCCCCEEEEEec
Confidence 00122345677999999999988764
No 105
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=3.9e-30 Score=252.94 Aligned_cols=256 Identities=16% Similarity=0.185 Sum_probs=206.3
Q ss_pred CCCCCcccHH--------HhhhhhccccccEEEEEEcc-CCCEEEEEeCCCeEEEEECCCC-------cEEEEeCCCCce
Q 009993 123 AGFSDDKSWK--------ELIDVLYGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLEDG-------FSIASSKPLGCT 186 (520)
Q Consensus 123 ~~~~~~~~W~--------~~~~~l~~h~~~V~~l~~~~-~~~~l~sgs~dg~v~vwd~~~~-------~~~~~~~~~~~~ 186 (520)
+++....+|+ ..+..+.+|.+.|++++|+| ++++|++|+.||+|++||+.++ +.+..+.+|...
T Consensus 54 ~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~ 133 (402)
T 2aq5_A 54 SGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133 (402)
T ss_dssp SSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSC
T ss_pred cCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCe
Confidence 3455567786 24567889999999999999 8999999999999999999988 567888899988
Q ss_pred EEEEe--cCC-CEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEe--ccCCCCeEEEEE--cCCEEEEEecCCeE
Q 009993 187 IRAVA--ADK-KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL--WEHEGPITSLAL--DLTRIYSGSWDMTV 259 (520)
Q Consensus 187 v~~~~--~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~--~~~~l~s~s~dg~v 259 (520)
|.++. +++ ++|++|+.||.|++||+.++. ....+ .+|...|.+++| ++++|++++.||.|
T Consensus 134 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 200 (402)
T 2aq5_A 134 VGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-------------AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRV 200 (402)
T ss_dssp EEEEEECSSBTTEEEEEETTSCEEEEETTTTE-------------EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEE
T ss_pred EEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-------------ccEEEecCCCCCceEEEEECCCCCEEEEEecCCcE
Confidence 88776 776 699999999999999997753 44556 789999999999 77899999999999
Q ss_pred EEEECCCCcEEEEe-e-eccC-EEEEe--eCCCEEEEE---c-CCeEEEEECCCCee-eEEeecccccceEEEEecCCCC
Q 009993 260 RVWDRALLKCLKVL-R-HSDW-VYGLA--PHDTTVAST---S-GSDVYIWDTNSGCL-LTVVNGAHVGNTKSLARSHTGD 329 (520)
Q Consensus 260 ~iwd~~~~~~~~~~-~-~~~~-v~~~~--~~~~~l~~~---~-d~~i~iwd~~~~~~-~~~~~~~~~~~i~~l~~s~~~~ 329 (520)
++||+++++.+..+ . |... +.++. +++.+++++ + |+.|++||++++.. +......|...+.+++|+|+++
T Consensus 201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 280 (402)
T 2aq5_A 201 RVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTN 280 (402)
T ss_dssp EEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTT
T ss_pred EEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCC
Confidence 99999999998887 3 5543 55554 889999998 5 89999999998764 4444335788899999999999
Q ss_pred EEE-EEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcc
Q 009993 330 FLF-TGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 330 ~l~-tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~ 394 (520)
+|+ +|+.||.|++||+.++... ...+..+. |..+|++++|+|+..+.++.++.+++|++.+.
T Consensus 281 ~l~~~g~~dg~i~i~d~~~~~~~--~~~l~~~~-~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 281 IVYLCGKGDSSIRYFEITSEAPF--LHYLSMFS-SKESQRGMGYMPKRGLEVNKCEIARFYKLHER 343 (402)
T ss_dssp EEEEEETTCSCEEEEEECSSTTC--EEEEEEEC-CSSCCSEEEECCGGGSCGGGTEEEEEEEEETT
T ss_pred EEEEEEcCCCeEEEEEecCCCcc--eEeecccc-cCCcccceEEecccccceecceeEEEEEcCCC
Confidence 986 5567999999999987310 11223332 66899999998853333456779999999763
No 106
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=2.7e-29 Score=249.03 Aligned_cols=252 Identities=16% Similarity=0.176 Sum_probs=206.5
Q ss_pred hhhccccccEEEEEEccC-CCEEEEEeCCCeEEEEECCC----------CcEEEEeCCCCceEEEEe--cCCC-EEEEEe
Q 009993 136 DVLYGHTEAVLTVFVLAS-AKLLFTSGYDSIVRMWHLED----------GFSIASSKPLGCTIRAVA--ADKK-LLVAGG 201 (520)
Q Consensus 136 ~~l~~h~~~V~~l~~~~~-~~~l~sgs~dg~v~vwd~~~----------~~~~~~~~~~~~~v~~~~--~~~~-~l~sg~ 201 (520)
..+.+|.+.|++++|+|+ +.+|++|+.||.|++|++.+ ...+..+.+|...+.+++ +++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445789999999999997 78999999999999999986 567778888988776665 7777 999999
Q ss_pred CCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCC---cEEEEee-
Q 009993 202 TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALL---KCLKVLR- 274 (520)
Q Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~---~~~~~~~- 274 (520)
.||.|++||+.++... .........+.+|...|.+++| ++..+++++.||.|++||++++ +.+..+.
T Consensus 202 ~dg~i~vwd~~~~~~~------~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~ 275 (430)
T 2xyi_A 202 DDHTICLWDINATPKE------HRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 275 (430)
T ss_dssp TTSCEEEEETTSCCBG------GGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred CCCeEEEEeCCCCCCC------CceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence 9999999999774210 0011224566789999999999 4578999999999999999987 4666664
Q ss_pred eccCEEEEe--eCCC-EEEEEc-CCeEEEEECCC-CeeeEEeecccccceEEEEecCCCC-EEEEEeCCCeEEEEEcccC
Q 009993 275 HSDWVYGLA--PHDT-TVASTS-GSDVYIWDTNS-GCLLTVVNGAHVGNTKSLARSHTGD-FLFTGGEDGAIHMYEIIND 348 (520)
Q Consensus 275 ~~~~v~~~~--~~~~-~l~~~~-d~~i~iwd~~~-~~~~~~~~~~~~~~i~~l~~s~~~~-~l~tg~~dg~i~iwd~~~~ 348 (520)
|...|.++. +++. ++++++ ||.|++||+++ +..+..+. +|...|.+++|+|++. +|++++.||.|++||+...
T Consensus 276 ~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~-~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee-cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence 888999988 6565 677888 99999999998 45677776 6999999999999985 7999999999999999873
Q ss_pred cccc--------ceeeeeeecCCcCCEEEEEecC--C-EEEEEeCCCcEEEEeCCcc
Q 009993 349 CTEA--------NVLLVATWIPHTGPVNSLAFEF--P-WLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 349 ~~~~--------~~~~~~~~~~h~~~v~~l~~~~--~-~l~s~s~dg~i~vwd~~~~ 394 (520)
.... ....+..+.+|...|++++|+| . +|++++.||.|+||++...
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 355 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 2111 1245677789999999999987 3 8999999999999999864
No 107
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-28 Score=245.55 Aligned_cols=273 Identities=10% Similarity=0.065 Sum_probs=209.1
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc---EEEEeCCC-----------------------------------
Q 009993 142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF---SIASSKPL----------------------------------- 183 (520)
Q Consensus 142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~---~~~~~~~~----------------------------------- 183 (520)
..+|.+++|+|+|++|+++ .++.|++||+.+|+ .+..+..+
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999977666 47899999999998 65555432
Q ss_pred -------------------CceEEEE--ecCCCEE-EEEeCCCcEEEEEcc--cCcceeeeccCCccccceEEe--ccCC
Q 009993 184 -------------------GCTIRAV--AADKKLL-VAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRL--WEHE 237 (520)
Q Consensus 184 -------------------~~~v~~~--~~~~~~l-~sg~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~--~~h~ 237 (520)
...|.++ +|++++| ++|+.||.|++||+. ++. ....+ ..|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~-------------~~~~~~~~~~~ 149 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN-------------VLKLRKRFCFS 149 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS-------------CEEEEEEEECS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc-------------eeeeeecccCC
Confidence 2246655 4899986 899999999999997 442 22233 3677
Q ss_pred CCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEE----Eee-eccCEEEEe--eC---CCEEEEEc-CCeEEEEECCC
Q 009993 238 GPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLK----VLR-HSDWVYGLA--PH---DTTVASTS-GSDVYIWDTNS 304 (520)
Q Consensus 238 ~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~----~~~-~~~~v~~~~--~~---~~~l~~~~-d~~i~iwd~~~ 304 (520)
..|.+++| ++.+|++|+.||.|++|++.+++... .+. |...|.++. ++ +++|++++ |+.|++||+++
T Consensus 150 ~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~ 229 (450)
T 2vdu_B 150 KRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ 229 (450)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred CCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence 89999999 67899999999999999998877553 444 888999887 77 88999998 99999999999
Q ss_pred CeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec-----------------------
Q 009993 305 GCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI----------------------- 361 (520)
Q Consensus 305 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~----------------------- 361 (520)
++.+..+..+|...|.+++|+ ++++|++|+.|+.|++||++++. .+..+.
T Consensus 230 ~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (450)
T 2vdu_B 230 CFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGK------NLSTFDYNSLIKPYLNDQHLAPPRFQNEN 302 (450)
T ss_dssp TTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCC------EEEEEECHHHHGGGCCTTSBC--------
T ss_pred CceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCc------Eeeeecchhhhhhhhhhcccccccccccc
Confidence 988887666799999999999 99999999999999999999883 333333
Q ss_pred --CCcCCEEEEEecC--CEEEEEe-CCCcEEEEeC--CcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC
Q 009993 362 --PHTGPVNSLAFEF--PWLVSAA-GDGKLSLIDV--RKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD 434 (520)
Q Consensus 362 --~h~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 434 (520)
.....|.++.|.| ++|++++ .|+.|++|++ .+.. .. .....+.++ ..+.++.++++
T Consensus 303 ~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~---------~l-------~~~~~~~~~-~~v~~~~~~~~ 365 (450)
T 2vdu_B 303 NDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKG---------DL-------ALKQIITFP-YNVISLSAHND 365 (450)
T ss_dssp --CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTT---------CE-------EEEEEEECS-SCEEEEEEETT
T ss_pred cccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCC---------ce-------eeccEeccC-CceEEEEecCC
Confidence 2345789999975 6888888 8999999999 3310 00 112223444 56777777776
Q ss_pred -EEEEecC-------CCeEEEEeCCc
Q 009993 435 -RIVCGGE-------EGIVRIWNFSQ 452 (520)
Q Consensus 435 -~l~sg~~-------Dg~v~iwd~~~ 452 (520)
.+++.+. +..|.+|.+..
T Consensus 366 ~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 366 EFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred cEEEEEecccCCCCCCcceEEEEEEc
Confidence 4444432 55688887753
No 108
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=1.2e-28 Score=238.68 Aligned_cols=283 Identities=13% Similarity=0.206 Sum_probs=213.6
Q ss_pred EEECCCCcEEEEeCCCCceEEEEe--cC---CCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEE
Q 009993 168 MWHLEDGFSIASSKPLGCTIRAVA--AD---KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITS 242 (520)
Q Consensus 168 vwd~~~~~~~~~~~~~~~~v~~~~--~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 242 (520)
.|+....+.+..+.+|...|.++. |+ +++|++|+.||.|++||+.+.. ......+.+|...|.+
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~-----------~~~~~~~~~h~~~v~~ 91 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG-----------QTIPKAQQMHTGPVLD 91 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS-----------CEEEEEEEECSSCEEE
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC-----------ceeEEEeccccCCEEE
Confidence 345566677888899999998887 66 5899999999999999997632 1233567789999999
Q ss_pred EEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe----eCCCEEEEEc-CCeEEEEECCCCeeeEEeeccc
Q 009993 243 LAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA----PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAH 315 (520)
Q Consensus 243 l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~----~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~ 315 (520)
++| ++++|++++.||.|++||+++++.+....|...|.++. +++.++++++ |+.|++||+++++.+..+. .
T Consensus 92 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~ 169 (368)
T 3mmy_A 92 VCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ--L 169 (368)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE--C
T ss_pred EEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe--c
Confidence 999 67899999999999999999999988888999999886 5677888888 9999999999999888886 3
Q ss_pred ccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe--cCC----EEEEEeCCCcEEEE
Q 009993 316 VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--EFP----WLVSAAGDGKLSLI 389 (520)
Q Consensus 316 ~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~----~l~s~s~dg~i~vw 389 (520)
...+.++.+. +..+++++.++.+++|+++..... .......+...+.++.+ ++. .+++++.||.|++|
T Consensus 170 ~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~ 243 (368)
T 3mmy_A 170 PERCYCADVI--YPMAVVATAERGLIVYQLENQPSE----FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243 (368)
T ss_dssp SSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEE----EEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred CCCceEEEec--CCeeEEEeCCCcEEEEEeccccch----hhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence 3466677665 458889999999999999876321 11111223334444444 433 49999999999999
Q ss_pred eCCcccccCCCCCCCceeeeeecCCCcccccCcc------------eeeEEEEec--CCEEEEecCCCeEEEEeCCchHh
Q 009993 390 DVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE------------CNLLSVDIG--ADRIVCGGEEGIVRIWNFSQAFE 455 (520)
Q Consensus 390 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~~~~~ 455 (520)
|++..... .....+.+|. ..+.++.++ +.+|++|+.||.|++||+.++..
T Consensus 244 ~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~ 307 (368)
T 3mmy_A 244 YINPPNPA----------------KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTK 307 (368)
T ss_dssp ESSCSCHH----------------HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred ecCCCCcc----------------ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcE
Confidence 99874210 1111222333 256666665 55999999999999999997754
Q ss_pred HHHHhhhhcccccchhhhhccceeeeccCCCccccccccc
Q 009993 456 IERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAA 495 (520)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~~ 495 (520)
+... ......+..++|+|+|+.+++++.+.
T Consensus 308 ~~~~----------~~~~~~v~~~~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 308 LKTS----------EQLDQPISACCFNHNGNIFAYASSYD 337 (368)
T ss_dssp EEEC----------CCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred EEEe----------cCCCCCceEEEECCCCCeEEEEeccc
Confidence 4221 12345578999999999999998754
No 109
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.1e-29 Score=240.90 Aligned_cols=270 Identities=8% Similarity=-0.030 Sum_probs=193.5
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCcccc
Q 009993 149 FVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQN 228 (520)
Q Consensus 149 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 228 (520)
.+.+++.+|++|+.||+|++||+.+++.+..+. ...+.++..... +++|+.|++|++|+.... ...++.... ..
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~-~~~~~~~~~--~~ 116 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQ-ITILDSKTN--KV 116 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-EEEECSTTEEEEEETTTE-EEEEETTTC--CE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-eEEecCCCeEEEEEccCc-eEEeecCCc--ce
Confidence 345678899999999999999999998887775 223333332222 999999999999987642 112222111 11
Q ss_pred ceEEeccCCCCeEEEEE----cCCEEEEEecCCeEEEEECCCCcEEEEee--eccCEEEEe--eCCCEEEEEc-CCeEEE
Q 009993 229 TQFRLWEHEGPITSLAL----DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA--PHDTTVASTS-GSDVYI 299 (520)
Q Consensus 229 ~~~~~~~h~~~v~~l~~----~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~--~~~~~l~~~~-d~~i~i 299 (520)
......+|.+.|.++++ +++++++++.||+|++||+++++...... +...+.++. |++.++++|+ |+.|++
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i 196 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV 196 (343)
T ss_dssp EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 11223367789999999 45789999999999999999999877664 555677766 8999999988 999999
Q ss_pred EECCCCeee-EEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEE--EEEecC--
Q 009993 300 WDTNSGCLL-TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN--SLAFEF-- 374 (520)
Q Consensus 300 wd~~~~~~~-~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~--~l~~~~-- 374 (520)
||+++++.+ ..+..+|.++|++++|+|++.+|++++ |+.|++||+++..... .+..+..|...+. +++|+|
T Consensus 197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g 272 (343)
T 3lrv_A 197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL---AYPTYTIPEFKTGTVTYDIDDSG 272 (343)
T ss_dssp EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB---SSCCCBC-----CCEEEEECTTS
T ss_pred EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce---eecccccccccccceEEEECCCC
Confidence 999999887 677644999999999999999999999 5599999999883221 1222222444444 699976
Q ss_pred CEEEEEeC-CCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEe-----cCCEEEEecCCCeEEEE
Q 009993 375 PWLVSAAG-DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI-----GADRIVCGGEEGIVRIW 448 (520)
Q Consensus 375 ~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~l~sg~~Dg~v~iw 448 (520)
.+|++++. |+.|++|++.+..... .. ..+..+.+ +...+++++.||.++++
T Consensus 273 ~~l~~~s~~d~~i~v~~~~~~~~~~---------------------~~--~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 273 KNMIAYSNESNSLTIYKFDKKTKNW---------------------TK--DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTTCSE---------------------EE--EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred CEEEEecCCCCcEEEEEEcccccce---------------------Ee--cCceeEecCccccccceeEEEecCCceEEE
Confidence 69999998 9999999997632110 00 22223333 33488888889988887
Q ss_pred eCC
Q 009993 449 NFS 451 (520)
Q Consensus 449 d~~ 451 (520)
-..
T Consensus 330 ~~~ 332 (343)
T 3lrv_A 330 LKT 332 (343)
T ss_dssp EEC
T ss_pred Eec
Confidence 544
No 110
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=2.3e-28 Score=242.36 Aligned_cols=261 Identities=16% Similarity=0.236 Sum_probs=196.5
Q ss_pred eCCCCceEEEEe--cC-CCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCC-EEEEE
Q 009993 180 SKPLGCTIRAVA--AD-KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLT-RIYSG 253 (520)
Q Consensus 180 ~~~~~~~v~~~~--~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~-~l~s~ 253 (520)
...|...|.++. ++ +.+|++|+.||.|++||+.+..... ...........+.+|...|.+++| ++. +|++|
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~---~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKP---EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSC---CTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCccccc---CccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 345666665554 75 6799999999999999997631100 000113456778899999999999 344 99999
Q ss_pred ecCCeEEEEECCCCcE-------EEEe-eeccCEEEEe--e-CCCEEEEEc-CCeEEEEECCCC---eeeEEeecccccc
Q 009993 254 SWDMTVRVWDRALLKC-------LKVL-RHSDWVYGLA--P-HDTTVASTS-GSDVYIWDTNSG---CLLTVVNGAHVGN 318 (520)
Q Consensus 254 s~dg~v~iwd~~~~~~-------~~~~-~~~~~v~~~~--~-~~~~l~~~~-d~~i~iwd~~~~---~~~~~~~~~~~~~ 318 (520)
+.||+|++||+.++.. ...+ .|...|.++. + ++.++++++ |+.|++||++++ ..+..+. .|...
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~ 279 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTAE 279 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-CCSSC
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-cCCCC
Confidence 9999999999987322 2333 3888899988 4 677888888 999999999987 4666665 69999
Q ss_pred eEEEEecCCCC-EEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcc
Q 009993 319 TKSLARSHTGD-FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 319 i~~l~~s~~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~ 394 (520)
|++++|+|++. ++++|+.||.|++||++... .++..+.+|...|++++|+| .+|++++.||.|++||+...
T Consensus 280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-----~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLK-----LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTT-----SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-----CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence 99999999987 78899999999999999853 46778889999999999986 47999999999999999873
Q ss_pred cccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC---EEEEecCCCeEEEEeCCchH
Q 009993 395 LRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD---RIVCGGEEGIVRIWNFSQAF 454 (520)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~sg~~Dg~v~iwd~~~~~ 454 (520)
........ .............+|...+.++.++++ +|++++.||.|+||++....
T Consensus 355 ~~~~~~~~-----~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 355 GEEQSTED-----AEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp TCCCCHHH-----HHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred ccccCccc-----cccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 21110000 000001223345677777887777654 89999999999999998653
No 111
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=7.4e-29 Score=240.02 Aligned_cols=234 Identities=10% Similarity=0.131 Sum_probs=181.4
Q ss_pred hhccccccEEEEEEccCCCEEEEE-----------eCCCeEEEEECCCCcEE----EEeC-----CCC--ceEEEEecCC
Q 009993 137 VLYGHTEAVLTVFVLASAKLLFTS-----------GYDSIVRMWHLEDGFSI----ASSK-----PLG--CTIRAVAADK 194 (520)
Q Consensus 137 ~l~~h~~~V~~l~~~~~~~~l~sg-----------s~dg~v~vwd~~~~~~~----~~~~-----~~~--~~v~~~~~~~ 194 (520)
.|.+|.+.|.+++++ ++.+++| +.|+++++|++.+.... .... .+. ..+.+++|||
T Consensus 68 ~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg 145 (365)
T 4h5i_A 68 ALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG 145 (365)
T ss_dssp ECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred EccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence 467899999998774 5666665 45788999998765322 1111 122 3456788999
Q ss_pred CEEEEEe--CCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEE
Q 009993 195 KLLVAGG--TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCL 270 (520)
Q Consensus 195 ~~l~sg~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~ 270 (520)
+++++++ .|++|++||+.++. ....+ .|.+.|.+++| ++.++++++.| .+++|+..+++.+
T Consensus 146 ~~la~as~~~d~~i~iwd~~~~~-------------~~~~~-~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~ 210 (365)
T 4h5i_A 146 TVAAIASSKVPAIMRIIDPSDLT-------------EKFEI-ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCI 210 (365)
T ss_dssp SCEEEEESCSSCEEEEEETTTTE-------------EEEEE-ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEE
T ss_pred CEEEEEECCCCCEEEEeECCCCc-------------EEEEe-CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcce
Confidence 9887554 78999999998763 23333 47889999999 77899998855 5677777777665
Q ss_pred EEee---eccCEEEEe--eCCCEEEEEc-CC----eEEEEECCCCeee----EEeecccccceEEEEecCCCCEEEEEeC
Q 009993 271 KVLR---HSDWVYGLA--PHDTTVASTS-GS----DVYIWDTNSGCLL----TVVNGAHVGNTKSLARSHTGDFLFTGGE 336 (520)
Q Consensus 271 ~~~~---~~~~v~~~~--~~~~~l~~~~-d~----~i~iwd~~~~~~~----~~~~~~~~~~i~~l~~s~~~~~l~tg~~ 336 (520)
.... |...|.++. |++..+++++ ++ .+++||+...... ..+. +|...|++++|+|+|++||+|+.
T Consensus 211 ~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~V~~~~~Spdg~~lasgs~ 289 (365)
T 4h5i_A 211 ARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVT-NRFKGITSMDVDMKGELAVLASN 289 (365)
T ss_dssp EEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEE-SSCSCEEEEEECTTSCEEEEEET
T ss_pred eeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeec-CCCCCeEeEEECCCCCceEEEcC
Confidence 4432 677788776 8999999988 65 5888998776532 2333 68899999999999999999999
Q ss_pred CCeEEEEEcccCccccceeeeee-ecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993 337 DGAIHMYEIINDCTEANVLLVAT-WIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 337 dg~i~iwd~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~ 394 (520)
|++|+|||++++ +++.+ +.+|..+|++|+|+| ++|++||.|++|+|||+...
T Consensus 290 D~~V~iwd~~~~------~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 290 DNSIALVKLKDL------SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TSCEEEEETTTT------EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCEEEEEECCCC------cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999998 66766 478999999999987 69999999999999999754
No 112
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.2e-28 Score=236.63 Aligned_cols=273 Identities=10% Similarity=0.082 Sum_probs=210.5
Q ss_pred eCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCC-EEEEEe
Q 009993 180 SKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLT-RIYSGS 254 (520)
Q Consensus 180 ~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~-~l~s~s 254 (520)
..+|...|.++. +++.+|++|+.||.|++||+.++.. ......+.+|...|.+++| +++ +|++|+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 76 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK----------NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT 76 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT----------EEEEEEEEECSSCEEEEEEEESSSEEEEEEE
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc----------cccceeeeecCCceEEEEECCCCCcEEEEEc
Confidence 457888887765 8999999999999999999977531 1124455689999999999 678 999999
Q ss_pred cCCeEEEEEC-CCCcEEEEee--eccCEEEEe--eCCCEEEEEc-CCeEEEEECCC---------CeeeEEeecccccce
Q 009993 255 WDMTVRVWDR-ALLKCLKVLR--HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNS---------GCLLTVVNGAHVGNT 319 (520)
Q Consensus 255 ~dg~v~iwd~-~~~~~~~~~~--~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~---------~~~~~~~~~~~~~~i 319 (520)
.||.|++||+ .+++...... |...|.++. + +..+++++ |+.|++||+++ ++++..+. |...+
T Consensus 77 ~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v 153 (342)
T 1yfq_A 77 VQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKI 153 (342)
T ss_dssp TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCE
T ss_pred CCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--eCCce
Confidence 9999999999 8887765556 889999988 5 88899888 99999999987 66666654 88999
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEEccc-CccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCccc
Q 009993 320 KSLARSHTGDFLFTGGEDGAIHMYEIIN-DCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLL 395 (520)
Q Consensus 320 ~~l~~s~~~~~l~tg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~ 395 (520)
.+++|+|++ +++++.|+.|++||+++ ... ........|...|.+++|+| .++++++.||.|++|+++...
T Consensus 154 ~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~ 227 (342)
T 1yfq_A 154 FTMDTNSSR--LIVGMNNSQVQWFRLPLCEDD----NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227 (342)
T ss_dssp EEEEECSSE--EEEEESTTEEEEEESSCCTTC----CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTC
T ss_pred EEEEecCCc--EEEEeCCCeEEEEECCccccc----cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCC
Confidence 999999887 99999999999999988 521 23334557888999999976 699999999999999997641
Q ss_pred ccCCCCCCCceeeeeecCCCcccccCc---------ceeeEEEEe--cCCEEEEecCCCeEEEEeCCchHhHHHHhhhhc
Q 009993 396 RSGRPTSGKRVSRVIEVEPPQRMLHGF---------ECNLLSVDI--GADRIVCGGEEGIVRIWNFSQAFEIERRARALR 464 (520)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~--~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~ 464 (520)
.... ......+.+| ...+.++.+ ++.+|++|+.||.|++||+.++..+...
T Consensus 228 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----- 289 (342)
T 1yfq_A 228 DDYN-------------SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF----- 289 (342)
T ss_dssp CSTT-------------CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC-----
T ss_pred cccc-------------cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhh-----
Confidence 0000 0112222333 336666665 4569999999999999999987543321
Q ss_pred ccccchhh-hhccceeeeccCCCcccccccccc
Q 009993 465 GIRLENRM-RRRKLQTEMSSKGGRTDQCSVAAK 496 (520)
Q Consensus 465 ~~~~~~~~-~~~~~~~~~s~~g~~~~~~s~~~~ 496 (520)
... ...+..++ |+|..+++++.+..
T Consensus 290 -----~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 290 -----AKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp -----CCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred -----hcccCCCceEec--CCCCeEEEEecCCc
Confidence 111 23456666 99999999987765
No 113
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=4.3e-28 Score=233.86 Aligned_cols=284 Identities=11% Similarity=0.129 Sum_probs=191.2
Q ss_pred EEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE
Q 009993 168 MWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL 245 (520)
Q Consensus 168 vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 245 (520)
+|++.+...+.....|...|.+++ +++++|++|+.+| +++||+.++. ....... ..+..+.+
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~-------------~~~~~~~--~~~~~~~~ 66 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVA-------------HIMSQEM--RHLSKVRM 66 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEE-------------EEEEEEC--SCCCEEEE
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcc-------------eeeeeec--CCeEEEEE
Confidence 566777777777778887776655 9999999998776 7899986542 1111111 23445555
Q ss_pred --cCCEE-EEEecCCeEEEEECCCCcEEEEeeeccCEEEEeeCCCEEEEEcCCeEEEEECCCC-eeeEEeecccccceEE
Q 009993 246 --DLTRI-YSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSG-CLLTVVNGAHVGNTKS 321 (520)
Q Consensus 246 --~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~i~~ 321 (520)
+++.+ ++++.|++|++||..+++++..+.+...|.++..++..++++.++.|++||+.++ +.+..+.. +...
T Consensus 67 ~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~----~~~~ 142 (355)
T 3vu4_A 67 LHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR----FGGV 142 (355)
T ss_dssp CTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE----EEEE
T ss_pred cCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc----CCce
Confidence 66665 6788889999999999999999998899999998888888888999999999988 66666542 3445
Q ss_pred EEecCCCCEEEE--EeCCCeEEEEEcccCccc---------cceee-eeeecCCcCCEEEEEecC--CEEEEEeCCCc-E
Q 009993 322 LARSHTGDFLFT--GGEDGAIHMYEIINDCTE---------ANVLL-VATWIPHTGPVNSLAFEF--PWLVSAAGDGK-L 386 (520)
Q Consensus 322 l~~s~~~~~l~t--g~~dg~i~iwd~~~~~~~---------~~~~~-~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~-i 386 (520)
+++++ .++++ |+.||.|++||+.++... ....+ +..+.+|.+.|++++|+| .+|++|+.||+ |
T Consensus 143 ~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v 220 (355)
T 3vu4_A 143 CEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTII 220 (355)
T ss_dssp EEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEE
T ss_pred EEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEE
Confidence 56666 56665 688999999999876310 00112 678899999999999976 69999999998 9
Q ss_pred EEEeCCcccccCCCCCCCceeeeeecCCCccccc-C-cceeeEEEEecC--CEEEEecCCCeEEEEeCCchHhHHHHhhh
Q 009993 387 SLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH-G-FECNLLSVDIGA--DRIVCGGEEGIVRIWNFSQAFEIERRARA 462 (520)
Q Consensus 387 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~--~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~ 462 (520)
++||++++ .....+. + |...|.++.+++ .+|++|+.||+|++||+..+...... .
T Consensus 221 ~iwd~~~~-------------------~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~--~ 279 (355)
T 3vu4_A 221 RVFKTEDG-------------------VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRH--A 279 (355)
T ss_dssp EEEETTTC-------------------CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSE--E
T ss_pred EEEECCCC-------------------cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccc--c
Confidence 99999874 2223333 4 777777777655 59999999999999999865321110 0
Q ss_pred hcc---------------cccchhhhhccceeeeccCCCcccccccc
Q 009993 463 LRG---------------IRLENRMRRRKLQTEMSSKGGRTDQCSVA 494 (520)
Q Consensus 463 ~~~---------------~~~~~~~~~~~~~~~~s~~g~~~~~~s~~ 494 (520)
... .............++|++||+.+++.+.+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~d 326 (355)
T 3vu4_A 280 LKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHT 326 (355)
T ss_dssp TTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTT
T ss_pred ccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCC
Confidence 000 00011111123668999999999887753
No 114
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.3e-28 Score=254.38 Aligned_cols=247 Identities=18% Similarity=0.197 Sum_probs=194.6
Q ss_pred EEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--c--CCEEE
Q 009993 178 ASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D--LTRIY 251 (520)
Q Consensus 178 ~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~--~~~l~ 251 (520)
..+.+|...|.++. +++++|++|+.||.|++||+.++. ......+.+|.++|++++| + +++++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-----------~~~~~~l~~h~~~V~~l~~s~~~~~~~l~ 71 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----------HKLIDTLTGHEGPVWRVDWAHPKFGTILA 71 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-----------EEEEEEECCCSSCEEEEEECCTTSCSEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-----------CccceeccCCcCceEEEEecCCCCCCEEE
Confidence 45678999998887 889999999999999999987432 2355678899999999999 3 78999
Q ss_pred EEecCCeEEEEECCCCc--EEEEee-eccCEEEEe--eC--CCEEEEEc-CCeEEEEECCCCe--eeEEeecccccceEE
Q 009993 252 SGSWDMTVRVWDRALLK--CLKVLR-HSDWVYGLA--PH--DTTVASTS-GSDVYIWDTNSGC--LLTVVNGAHVGNTKS 321 (520)
Q Consensus 252 s~s~dg~v~iwd~~~~~--~~~~~~-~~~~v~~~~--~~--~~~l~~~~-d~~i~iwd~~~~~--~~~~~~~~~~~~i~~ 321 (520)
+|+.||+|++||+.+++ .+..+. |...|.++. |+ +..+++++ ||.|++||++++. ....+. +|...|.+
T Consensus 72 s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~-~~~~~v~~ 150 (753)
T 3jro_A 72 SCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNS 150 (753)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE-CCSSCEEE
T ss_pred EEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEee-cCCCceEE
Confidence 99999999999999886 444444 889999988 66 88999998 9999999998873 233343 68999999
Q ss_pred EEecC-------------CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-----CEEEEEeCC
Q 009993 322 LARSH-------------TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-----PWLVSAAGD 383 (520)
Q Consensus 322 l~~s~-------------~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~l~s~s~d 383 (520)
++|+| ++.++++|+.||.|++||++++... ......+.+|..+|++++|+| .+|++|+.|
T Consensus 151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~D 228 (753)
T 3jro_A 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 228 (753)
T ss_dssp EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESS
T ss_pred EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc--ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecC
Confidence 99999 5899999999999999999877322 245667889999999999975 489999999
Q ss_pred CcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEE--EEecCCEEEEecCCCeEEEEeCCc
Q 009993 384 GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLS--VDIGADRIVCGGEEGIVRIWNFSQ 452 (520)
Q Consensus 384 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~Dg~v~iwd~~~ 452 (520)
|.|++||+++..... ........+|...+.+ +++++.+|++|+.||.|++|++..
T Consensus 229 g~I~iwd~~~~~~~~--------------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 229 RTCIIWTQDNEQGPW--------------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SCEEEEEESSSSSCC--------------BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CEEEEecCCCCCCcc--------------eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 999999998752111 0111122345555554 445666999999999999999984
No 115
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3e-28 Score=234.07 Aligned_cols=250 Identities=11% Similarity=0.042 Sum_probs=185.8
Q ss_pred cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECC------
Q 009993 192 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRA------ 265 (520)
Q Consensus 192 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~------ 265 (520)
.++..+++|+.||.|++||+.++.. ...+. ...|.++.+.+. +++++.|++|++|+..
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~-------------~~~~~--~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~ 109 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKT-------------ITTIT--TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITIL 109 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSC-------------EEEEE--EECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEE
T ss_pred CCCCEEEEECCCCcEEEEECCCCcE-------------EEEEe--cCCceeeeeCCc-eEEecCCCeEEEEEccCceEEe
Confidence 6788999999999999999987642 22222 355666777666 9999999999999665
Q ss_pred ---CCcEEEEee--eccCEEEEe--e--CCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEe
Q 009993 266 ---LLKCLKVLR--HSDWVYGLA--P--HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG 335 (520)
Q Consensus 266 ---~~~~~~~~~--~~~~v~~~~--~--~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~ 335 (520)
+++.+..+. |...|.++. + +++++++++ |+.|++||+++++........|...+++++|+|++.+|++|+
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~ 189 (343)
T 3lrv_A 110 DSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYS 189 (343)
T ss_dssp ETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEEC
T ss_pred ecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEc
Confidence 555555554 667899988 7 889999988 999999999999987776555677899999999999999999
Q ss_pred CCCeEEEEEcccCccccceeee-eeecC-CcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeee
Q 009993 336 EDGAIHMYEIINDCTEANVLLV-ATWIP-HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE 411 (520)
Q Consensus 336 ~dg~i~iwd~~~~~~~~~~~~~-~~~~~-h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 411 (520)
.||.|++||++++ ..+ ..+.. |.++|++++|+| .+|++++ |+.|++||+++.........
T Consensus 190 ~dg~i~iwd~~~~------~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~--------- 253 (343)
T 3lrv_A 190 PDGILDVYNLSSP------DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPT--------- 253 (343)
T ss_dssp TTSCEEEEESSCT------TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCC---------
T ss_pred CCCEEEEEECCCC------CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecc---------
Confidence 9999999999988 444 56677 999999999976 5899999 55999999998533211110
Q ss_pred cCCCcccccCcce----eeEEEEecCCEEEEecC-CCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeecc---
Q 009993 412 VEPPQRMLHGFEC----NLLSVDIGADRIVCGGE-EGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSS--- 483 (520)
Q Consensus 412 ~~~~~~~~~~~~~----~v~~~~~~~~~l~sg~~-Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--- 483 (520)
+..|.. ...++++++.+|++++. |+.|++|++........ ......+.|++
T Consensus 254 -------~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~--------------~~~~~~~~~~~~~~ 312 (343)
T 3lrv_A 254 -------YTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWT--------------KDEESALCLQSDTA 312 (343)
T ss_dssp -------CBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEE--------------EEEEEECCC----C
T ss_pred -------cccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceE--------------ecCceeEecCcccc
Confidence 001111 34667777789999888 99999999976532110 02345677777
Q ss_pred CCCcccccccc
Q 009993 484 KGGRTDQCSVA 494 (520)
Q Consensus 484 ~g~~~~~~s~~ 494 (520)
++..+++++.+
T Consensus 313 ~~~~l~~~~~d 323 (343)
T 3lrv_A 313 DFTDMDVVCGD 323 (343)
T ss_dssp CCCEEEEEEET
T ss_pred ccceeEEEecC
Confidence 77777766654
No 116
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=8.9e-27 Score=231.29 Aligned_cols=272 Identities=13% Similarity=0.114 Sum_probs=211.2
Q ss_pred hccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEE-----EeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009993 138 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA-----SSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR 210 (520)
Q Consensus 138 l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~-----~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd 210 (520)
+..+ ..+.+++|+|++.++++++.|+.|++||+.+++.+. .+.+|...+.++. +++.++++++.|+.|++||
T Consensus 119 ~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d 197 (433)
T 3bws_A 119 FKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFD 197 (433)
T ss_dssp EECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEE
T ss_pred EcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEE
Confidence 4444 345699999988888888889999999999998887 3446777776665 7899999999999999999
Q ss_pred cccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEE-EEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eC
Q 009993 211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIY-SGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PH 285 (520)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~ 285 (520)
+.++. ....+..|...+.+++| +++.++ +++.|+.|++||+++++.+..+.....+.++. ++
T Consensus 198 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 264 (433)
T 3bws_A 198 LKTLA-------------YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKD 264 (433)
T ss_dssp TTTCC-------------EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTT
T ss_pred CCCce-------------EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCC
Confidence 87653 44556688999999999 566664 55589999999999999988887666677776 78
Q ss_pred CCEEEEEc---------CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEE-EEEeCCCeEEEEEcccCcccccee
Q 009993 286 DTTVASTS---------GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFL-FTGGEDGAIHMYEIINDCTEANVL 355 (520)
Q Consensus 286 ~~~l~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l-~tg~~dg~i~iwd~~~~~~~~~~~ 355 (520)
++.+++++ |+.|++||+.+++.+..+. |...+.+++|+|+++.+ ++++.|+.|++||+.++ .
T Consensus 265 g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~------~ 336 (433)
T 3bws_A 265 GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG--PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK------K 336 (433)
T ss_dssp SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE--EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT------E
T ss_pred CCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc--CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC------c
Confidence 88888776 5789999999998877763 67789999999999754 66789999999999987 4
Q ss_pred eeeeecCCcCCEEEEEecC--CEEEEEeC---------------CCcEEEEeCCcccccCCCCCCCceeeeeecCCCccc
Q 009993 356 LVATWIPHTGPVNSLAFEF--PWLVSAAG---------------DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRM 418 (520)
Q Consensus 356 ~~~~~~~h~~~v~~l~~~~--~~l~s~s~---------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (520)
.+..+. +...+.+++|+| ++|++++. ||.|++||+.++... ..
T Consensus 337 ~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~-------------------~~ 396 (433)
T 3bws_A 337 VQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK-------------------EF 396 (433)
T ss_dssp EEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE-------------------EE
T ss_pred EEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE-------------------EE
Confidence 455543 667899999976 57877776 579999999874221 11
Q ss_pred cc-CcceeeEEEEecCCEEEEec-CCCeEEEEeCC
Q 009993 419 LH-GFECNLLSVDIGADRIVCGG-EEGIVRIWNFS 451 (520)
Q Consensus 419 ~~-~~~~~v~~~~~~~~~l~sg~-~Dg~v~iwd~~ 451 (520)
+. +......++++++++|++++ .|+.|++|+++
T Consensus 397 ~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 397 WEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EECSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred ecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 11 12233445556667777766 59999999986
No 117
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=8.3e-27 Score=215.17 Aligned_cols=272 Identities=13% Similarity=0.081 Sum_probs=180.1
Q ss_pred cEEEEEEccCCC---EEEEEeCCCeEEEEECCCC---cEEEEeCCCCceEEEEecCC--C-EEEEEeCCCcEE-EEEccc
Q 009993 144 AVLTVFVLASAK---LLFTSGYDSIVRMWHLEDG---FSIASSKPLGCTIRAVAADK--K-LLVAGGTDGFIH-CWRAVE 213 (520)
Q Consensus 144 ~V~~l~~~~~~~---~l~sgs~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~--~-~l~sg~~dg~i~-vwd~~~ 213 (520)
.+.++.|-..|- .+++++ ...|++|+..++ +.+.++..|..+|..+.+.. . ++.++-.+=.+. ++-+.-
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~ 119 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC 119 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence 455666644332 566666 567999999998 88999999999998887332 2 222221111111 111100
Q ss_pred CcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEe---cCCeEEEEEC-CCCcEEEEee-ecc--CEEEEee--
Q 009993 214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS---WDMTVRVWDR-ALLKCLKVLR-HSD--WVYGLAP-- 284 (520)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s---~dg~v~iwd~-~~~~~~~~~~-~~~--~v~~~~~-- 284 (520)
. .. ...........+|...|..+ ....++..+ .|+.|++|++ .+++.+..+. |.. .+.++++
T Consensus 120 s------pd-~~~~~~~l~s~g~~~~v~~l--~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~ 190 (356)
T 2w18_A 120 S------SD-DESEKQVLLKSGNIKAVLGL--TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ 190 (356)
T ss_dssp -------------CCEEEEEEEEEEEEEEE--TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEE
T ss_pred C------CC-ccccccEEEeCCCeEEEEec--CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccC
Confidence 0 00 00001111123344444443 445555554 5999999999 4577777665 444 4555666
Q ss_pred -CCCEEEEEc-CCeEEEEECCCCeeeEEeeccc--ccceEEEEecCCCCEE------------EEEeCCCeEEEEEcccC
Q 009993 285 -HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAH--VGNTKSLARSHTGDFL------------FTGGEDGAIHMYEIIND 348 (520)
Q Consensus 285 -~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~--~~~i~~l~~s~~~~~l------------~tg~~dg~i~iwd~~~~ 348 (520)
++.+|++++ |++|+|||+++++++.++..+| ...+.+++|+|+|.++ ++|+.|++|++||..++
T Consensus 191 g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg 270 (356)
T 2w18_A 191 GMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT 270 (356)
T ss_dssp TSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT
T ss_pred CCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC
Confidence 779999999 9999999999999999997432 3467888999999876 56888999999999988
Q ss_pred ccccceeeeeee-----cCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcc
Q 009993 349 CTEANVLLVATW-----IPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE 423 (520)
Q Consensus 349 ~~~~~~~~~~~~-----~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (520)
..+..+ .+|...+.+..+++..+++|+.|++|+|||+.++ .....+.+|.
T Consensus 271 ------k~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tG-------------------k~l~tL~gH~ 325 (356)
T 2w18_A 271 ------LSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLG-------------------QCTALLPPVS 325 (356)
T ss_dssp ------EEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTC-------------------SEEEEECCC-
T ss_pred ------EEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCC-------------------cEEEEecCCC
Confidence 444443 4777777777778889999999999999999984 3344455665
Q ss_pred ee---eEEEEecCCEEEEecCCCeEEEEeC
Q 009993 424 CN---LLSVDIGADRIVCGGEEGIVRIWNF 450 (520)
Q Consensus 424 ~~---v~~~~~~~~~l~sg~~Dg~v~iwd~ 450 (520)
.. ..+++|++.+|++|+.|++|+|||+
T Consensus 326 ~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 326 DQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp -CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 43 2457777779999999999999996
No 118
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=3.8e-26 Score=223.53 Aligned_cols=325 Identities=12% Similarity=0.073 Sum_probs=229.6
Q ss_pred CCcccHH----HhhhhhccccccEEEEEEccCCCEE-EEEeCCCeEEEEECCCCcEEEEeCCCCceEE--EEecCCCEEE
Q 009993 126 SDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLL-FTSGYDSIVRMWHLEDGFSIASSKPLGCTIR--AVAADKKLLV 198 (520)
Q Consensus 126 ~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l-~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~l~ 198 (520)
...+.|+ +++..+.+|. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+. .+. ++++++++|+
T Consensus 12 ~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~ 89 (391)
T 1l0q_A 12 DNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVY 89 (391)
T ss_dssp TEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEE
T ss_pred CEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEE
Confidence 3446665 3455666665 48999999999976 677799999999999999988887554 444 4558999775
Q ss_pred E-EeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEE-EEEecCCeEEEEECCCCcEEEEee
Q 009993 199 A-GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRI-YSGSWDMTVRVWDRALLKCLKVLR 274 (520)
Q Consensus 199 s-g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~ 274 (520)
+ ++.++.|++||+.++. ....+. +...+.+++| +++.+ ++++.|+.|++||+.+++.+..+.
T Consensus 90 ~~~~~~~~v~v~d~~~~~-------------~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 155 (391)
T 1l0q_A 90 VTNMASSTLSVIDTTSNT-------------VAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS 155 (391)
T ss_dssp EEETTTTEEEEEETTTTE-------------EEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EEECCCCEEEEEECCCCe-------------EEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe
Confidence 4 5567999999998763 222333 4457899999 56666 788889999999999999988888
Q ss_pred eccCEEEEe--eCCCEE-EEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEe---CCCeEEEEEccc
Q 009993 275 HSDWVYGLA--PHDTTV-ASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG---EDGAIHMYEIIN 347 (520)
Q Consensus 275 ~~~~v~~~~--~~~~~l-~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~---~dg~i~iwd~~~ 347 (520)
....+.++. ++++.+ +++. ++.|++||+++++....+. +...+.+++|+|+++++++++ .++.|++||+.+
T Consensus 156 ~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~ 233 (391)
T 1l0q_A 156 VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK--VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT 233 (391)
T ss_dssp CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC
Confidence 666667665 788877 4555 7999999999998887775 567889999999999999888 689999999998
Q ss_pred CccccceeeeeeecCCcCCEEEEEecC--CEE-EEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccc-cCcc
Q 009993 348 DCTEANVLLVATWIPHTGPVNSLAFEF--PWL-VSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML-HGFE 423 (520)
Q Consensus 348 ~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 423 (520)
+ ..+..+..|. .+.+++|+| ++| ++++.|+.|++||+.++........+..... ........ .++.
T Consensus 234 ~------~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 303 (391)
T 1l0q_A 234 N------KITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYA---SGQFIGSIPVQPV 303 (391)
T ss_dssp T------EEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEC---CSSCEEECSSCCC
T ss_pred C------eEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCc---cceeeeccccccc
Confidence 8 5566666655 578999976 456 6778899999999987543322211111000 00000000 0111
Q ss_pred eeeEEEEec--------C--CEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCccccccc
Q 009993 424 CNLLSVDIG--------A--DRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSV 493 (520)
Q Consensus 424 ~~v~~~~~~--------~--~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~ 493 (520)
..+..+..+ . -.+...+.|..+++|++.++... ........|+++|.+.++..+
T Consensus 304 ~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~----------------~~~~~~~~~~~~g~y~~~~~~ 367 (391)
T 1l0q_A 304 YPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS----------------KKQNPTHTYSETGIYTVRLTV 367 (391)
T ss_dssp CCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE----------------CSSSCEECCSSCEEEEEEEEE
T ss_pred ccccccccccccccccccceEEEEeCCCCceEEEEECCCCccc----------------CcCCCeEEeCCCceEEEEEEE
Confidence 112222222 1 25677778999999999876421 011245689999998888665
Q ss_pred c
Q 009993 494 A 494 (520)
Q Consensus 494 ~ 494 (520)
.
T Consensus 368 ~ 368 (391)
T 1l0q_A 368 S 368 (391)
T ss_dssp E
T ss_pred E
Confidence 4
No 119
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=1.2e-27 Score=234.16 Aligned_cols=225 Identities=10% Similarity=0.013 Sum_probs=154.0
Q ss_pred cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE----------cCCEEEEEecCCeEEE
Q 009993 192 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----------DLTRIYSGSWDMTVRV 261 (520)
Q Consensus 192 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----------~~~~l~s~s~dg~v~i 261 (520)
+++.+|++|+.|++|++||..++.... ......+.+|.+.|++++| ++++|++|+.|++|++
T Consensus 99 ~~~~~las~~~d~~v~lw~~~~~~~~~--------~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~ 170 (393)
T 4gq1_A 99 VYSLFLACVCQDNTVRLIITKNETIIT--------QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLII 170 (393)
T ss_dssp EEEEEEEEEETTSCEEEEEEETTEEEE--------EEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEE
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccce--------eeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEE
Confidence 556789999999999999998764211 1122346789999999999 4578999999999999
Q ss_pred EECCCCcEEEEe-eeccCEEEEe--eCC-CEEEEEc-CCeEEEEECCCCeeeEEee------------------------
Q 009993 262 WDRALLKCLKVL-RHSDWVYGLA--PHD-TTVASTS-GSDVYIWDTNSGCLLTVVN------------------------ 312 (520)
Q Consensus 262 wd~~~~~~~~~~-~~~~~v~~~~--~~~-~~l~~~~-d~~i~iwd~~~~~~~~~~~------------------------ 312 (520)
||++++.++..+ .|...|.+++ |++ .+|++++ |++|++||+++++......
T Consensus 171 Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 250 (393)
T 4gq1_A 171 WRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS 250 (393)
T ss_dssp EEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-----
T ss_pred EECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec
Confidence 999887665554 5889999988 555 4788888 9999999999876533221
Q ss_pred cccccceEEEEec-CCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEE------------------ec
Q 009993 313 GAHVGNTKSLARS-HTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLA------------------FE 373 (520)
Q Consensus 313 ~~~~~~i~~l~~s-~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~------------------~~ 373 (520)
.+|...+.++.|+ |++..+++++.|+++++||+..+. ....+..|...+..+. |.
T Consensus 251 ~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
T 4gq1_A 251 SGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN------DYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH 324 (393)
T ss_dssp -CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred ccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC------CCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence 2466778888886 799999999999999999998773 3333333333333222 22
Q ss_pred C----CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEec--CCEEEEecCCCeEEE
Q 009993 374 F----PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVCGGEEGIVRI 447 (520)
Q Consensus 374 ~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~Dg~v~i 447 (520)
+ .++++|+.||.|++||+.++ .......+|...|.+++|+ +++||+++.|| +.+
T Consensus 325 ~~~~~~~~~sgs~Dg~V~lwd~~~~-------------------~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~l 384 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQLINTYEK-------------------DSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLL 384 (393)
T ss_dssp SSCTTEEEEEETTTTEEEEEETTCT-------------------TCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEE
T ss_pred cCCCCEEEEEECCCCEEEEEECCCC-------------------cEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEE
Confidence 1 26778889999999999874 2223334555667666654 55999999877 555
Q ss_pred EeC
Q 009993 448 WNF 450 (520)
Q Consensus 448 wd~ 450 (520)
|.+
T Consensus 385 vrL 387 (393)
T 4gq1_A 385 TRL 387 (393)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 120
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.8e-28 Score=236.28 Aligned_cols=249 Identities=8% Similarity=-0.029 Sum_probs=186.2
Q ss_pred hhhhhhhcCCCCCCCCCCCCCCCcccHH-Hhhhhhc-cccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCC
Q 009993 105 KEFYCERWGLPIASAPLGAGFSDDKSWK-ELIDVLY-GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP 182 (520)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~W~-~~~~~l~-~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~ 182 (520)
+.+++..|. |++ .......|. +....+. +|.+.|++++|+|+|.+||+++.||+|++||.++ .+..+.
T Consensus 53 ~~v~~V~Fs-Pdg------~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~- 122 (588)
T 2j04_A 53 KNLFHVKEF-PLE------FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD- 122 (588)
T ss_dssp GGTEEEEEE-CCC------CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-
T ss_pred ccEEEEEEC-CCC------CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-
Confidence 456677775 443 222223443 2222333 6689999999999999999999999999999654 666666
Q ss_pred CCc-----eEEE--EecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEe----ccCCCCeEEEEEcCCEEE
Q 009993 183 LGC-----TIRA--VAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL----WEHEGPITSLALDLTRIY 251 (520)
Q Consensus 183 ~~~-----~v~~--~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~~~~~l~ 251 (520)
|.. .+.+ ++|+|++|++|+.||+|++||+.++... .........+ .+|...|.+++|.++-++
T Consensus 123 ~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~------~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLa 196 (588)
T 2j04_A 123 SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSEN------TPEFYFESSIRLSDAGSKDWVTHIVWYEDVLV 196 (588)
T ss_dssp CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTT------CCCCEEEEEEECSCTTCCCCEEEEEEETTEEE
T ss_pred CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccc------cccceeeeeeecccccccccEEEEEEcCCcEE
Confidence 553 3554 5599999999999999999999775210 0000023444 678899999999443399
Q ss_pred EEecCCeEEEEECCCCcE---EEEee--eccCEEEEeeCCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEe--
Q 009993 252 SGSWDMTVRVWDRALLKC---LKVLR--HSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLAR-- 324 (520)
Q Consensus 252 s~s~dg~v~iwd~~~~~~---~~~~~--~~~~v~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~-- 324 (520)
+++.|++|++||+.++.. ..++. |...|.+++..++.++++++++|++||+.+++...... +|...+..++|
T Consensus 197 ass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~~~tIkLWd~~~~~~~~~~~-gh~~~V~~va~~~ 275 (588)
T 2j04_A 197 AALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTCPGYVHKIDLKNYSISSLKT-GSLENFHIIPLNH 275 (588)
T ss_dssp EEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEECSSEEEEEETTTTEEEEEEC-SCCSCCCEEEETT
T ss_pred EEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEeCCeEEEEECCCCeEEEEEc-CCCceEEEEEeee
Confidence 999999999999988773 34553 67889888865889999999999999999888744443 69999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCc
Q 009993 325 SHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 325 s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~ 393 (520)
+|++..++++++||+ ++|... .++++|+..++++.|+++++|+...
T Consensus 276 s~d~~~La~a~edG~-klw~~d----------------------~~~~spd~~l~a~~d~~v~lW~~~g 321 (588)
T 2j04_A 276 EKESTILLMSNKTSY-KVLLED----------------------ELHVTADNIIAPYLEKKFKKWSTIW 321 (588)
T ss_dssp CSSCEEEEECSSCEE-EEEESS----------------------SEEEECCCSSHHHHHHHHHHTTTTT
T ss_pred CCCCCEEEEEcCCCC-EEEeec----------------------cEEECCCceEEEEcCCEEEEEECCC
Confidence 999999999999999 999965 1446665444444599999998754
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=4.5e-25 Score=215.89 Aligned_cols=260 Identities=11% Similarity=0.055 Sum_probs=198.7
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEeCCCCce-EEEEecCCCEE-EEEeCCCcEEEEEcccCcceeeeccCCccccceEE
Q 009993 155 KLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT-IRAVAADKKLL-VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR 232 (520)
Q Consensus 155 ~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 232 (520)
.++++++.|+.|++||+.+++.+..+..|... ..+++++++.+ ++++.|+.|++||+.++. ....
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~-------------~~~~ 69 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN-------------VIAT 69 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE-------------EEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCe-------------EEEE
Confidence 46888999999999999999999888877542 33455899876 677799999999997763 2333
Q ss_pred eccCCCCeEEEEE--cCCEEE-EEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEE-EEEc-CCeEEEEECCCC
Q 009993 233 LWEHEGPITSLAL--DLTRIY-SGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTV-ASTS-GSDVYIWDTNSG 305 (520)
Q Consensus 233 ~~~h~~~v~~l~~--~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l-~~~~-d~~i~iwd~~~~ 305 (520)
+..+ ..+.+++| ++++++ +++.|+.|++||+.+++.+..+.+...+.++. ++++.+ ++++ ++.|++||+.++
T Consensus 70 ~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 148 (391)
T 1l0q_A 70 VPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK 148 (391)
T ss_dssp EECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred EECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 3333 48999999 567765 55567999999999999998888777777776 788877 5666 899999999999
Q ss_pred eeeEEeecccccceEEEEecCCCCEE-EEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEe-
Q 009993 306 CLLTVVNGAHVGNTKSLARSHTGDFL-FTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAA- 381 (520)
Q Consensus 306 ~~~~~~~~~~~~~i~~l~~s~~~~~l-~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s- 381 (520)
+.+..+. ....+.+++|+|+++.+ ++++.|+.|++||++++ .....+. +...+.+++|+| ++|++++
T Consensus 149 ~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~------~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~ 219 (391)
T 1l0q_A 149 AVINTVS--VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN------SVIDTVK-VEAAPSGIAVNPEGTKAYVTNV 219 (391)
T ss_dssp EEEEEEE--CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT------EEEEEEE-CSSEEEEEEECTTSSEEEEEEE
T ss_pred cEEEEEe--cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC------eEEEEEe-cCCCccceEECCCCCEEEEEec
Confidence 9888876 34567999999999987 57788999999999988 4444443 456789999976 5777777
Q ss_pred --CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcc-eeeEEEEecCCEE-EEecCCCeEEEEeCCchHhH
Q 009993 382 --GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE-CNLLSVDIGADRI-VCGGEEGIVRIWNFSQAFEI 456 (520)
Q Consensus 382 --~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~l-~sg~~Dg~v~iwd~~~~~~~ 456 (520)
.++.|++||+.++... ..+..+. ....++++++++| ++++.|+.|++||+.+++.+
T Consensus 220 ~~~~~~v~~~d~~~~~~~-------------------~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~ 279 (391)
T 1l0q_A 220 DKYFNTVSMIDTGTNKIT-------------------ARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTIT 279 (391)
T ss_dssp CSSCCEEEEEETTTTEEE-------------------EEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CcCCCcEEEEECCCCeEE-------------------EEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEE
Confidence 7899999999874211 1112222 2234555666655 78899999999999987554
No 122
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.3e-25 Score=224.05 Aligned_cols=244 Identities=14% Similarity=0.093 Sum_probs=194.4
Q ss_pred hhccccccEEEEEEccCCCEE-EEEeCCCeEEEEECC--CCcEEEEeC--CCCceEEEE--ecCCCEEEEEeCCCcEEEE
Q 009993 137 VLYGHTEAVLTVFVLASAKLL-FTSGYDSIVRMWHLE--DGFSIASSK--PLGCTIRAV--AADKKLLVAGGTDGFIHCW 209 (520)
Q Consensus 137 ~l~~h~~~V~~l~~~~~~~~l-~sgs~dg~v~vwd~~--~~~~~~~~~--~~~~~v~~~--~~~~~~l~sg~~dg~i~vw 209 (520)
...+|.+.|++++|+|++++| ++|+.||.|++||+. +++.+..+. .|...|.++ +|++.+|++|+.||.|++|
T Consensus 97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSI 176 (450)
T ss_dssp ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence 456889999999999999996 899999999999999 888887775 455666555 5899999999999999999
Q ss_pred EcccCcceeeeccCCccccceEEeccCCCCeEEEEE--c---CCEEEEEecCCeEEEEECCCCcEEEEe--eeccCEEEE
Q 009993 210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D---LTRIYSGSWDMTVRVWDRALLKCLKVL--RHSDWVYGL 282 (520)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~---~~~l~s~s~dg~v~iwd~~~~~~~~~~--~~~~~v~~~ 282 (520)
++.++... ......+.+|...|.+++| + +.+|++|+.|++|++||+++++.+..+ .|...|.++
T Consensus 177 ~~~~~~~~---------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~ 247 (450)
T 2vdu_B 177 DINSIPEE---------KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSI 247 (450)
T ss_dssp ETTSCCCS---------SCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEE
T ss_pred ecCCcccc---------cccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEE
Confidence 98765311 0022345679999999999 5 569999999999999999999888774 388999988
Q ss_pred ee-CCCEEEEEc-CCeEEEEECCCCeeeEEeecc------------------------cccceEEEEecCCCCEEEEEe-
Q 009993 283 AP-HDTTVASTS-GSDVYIWDTNSGCLLTVVNGA------------------------HVGNTKSLARSHTGDFLFTGG- 335 (520)
Q Consensus 283 ~~-~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~------------------------~~~~i~~l~~s~~~~~l~tg~- 335 (520)
.. ++.+|++++ |+.|++||+++++.+..+... ....|.+++|+|++++|++++
T Consensus 248 ~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 327 (450)
T 2vdu_B 248 CCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVE 327 (450)
T ss_dssp EECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEET
T ss_pred EECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEEC
Confidence 75 789999999 999999999999988877521 235689999999999999998
Q ss_pred CCCeEEEEEc--ccCccccceeeeeeecCCcCCEEEEEecCC-EEEEEeC-------CCcEEEEeCCc
Q 009993 336 EDGAIHMYEI--INDCTEANVLLVATWIPHTGPVNSLAFEFP-WLVSAAG-------DGKLSLIDVRK 393 (520)
Q Consensus 336 ~dg~i~iwd~--~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s~-------dg~i~vwd~~~ 393 (520)
.|+.|++|++ ... .....+..+..| +.|.+++|+|+ .+++.+. +..|.+|.+..
T Consensus 328 ~d~~i~iw~~~~~~~---~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 328 ATKCIIILEMSEKQK---GDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp TCSEEEEEEECSSST---TCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred CCCeEEEEEeccCCC---CceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 8999999999 333 122456667777 89999999886 4444332 45588887754
No 123
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=5.7e-27 Score=224.91 Aligned_cols=242 Identities=16% Similarity=0.205 Sum_probs=188.2
Q ss_pred hhhhhhhcCCCCCCCCC-CCCCCCcccHH--------HhhhhhccccccEEEEEEcc--CCCEEEEEeCCCeEEEEECCC
Q 009993 105 KEFYCERWGLPIASAPL-GAGFSDDKSWK--------ELIDVLYGHTEAVLTVFVLA--SAKLLFTSGYDSIVRMWHLED 173 (520)
Q Consensus 105 ~~~~~~~~~~~~~~~~~-~~~~~~~~~W~--------~~~~~l~~h~~~V~~l~~~~--~~~~l~sgs~dg~v~vwd~~~ 173 (520)
..+.|..|. |+...+. .+.+...++|+ ++...+.+|.+.|++++|+| ++++|++|+.||.|++||+.+
T Consensus 12 ~~v~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~ 90 (351)
T 3f3f_A 12 DLVHDVVYD-FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDP 90 (351)
T ss_dssp SCEEEEEEC-SSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECT
T ss_pred cceeEEEEc-CCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCC
Confidence 345677777 4444333 33345568897 25667789999999999999 699999999999999999988
Q ss_pred C---------cEEEEeCCCCceEEEEe--cC--CCEEEEEeCCCcEEEEEcccCccee-eeccCCccccceEEeccCCCC
Q 009993 174 G---------FSIASSKPLGCTIRAVA--AD--KKLLVAGGTDGFIHCWRAVEVLPHL-FDISGSEKQNTQFRLWEHEGP 239 (520)
Q Consensus 174 ~---------~~~~~~~~~~~~v~~~~--~~--~~~l~sg~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~h~~~ 239 (520)
+ +.+..+..|...|.++. ++ +.++++++.||.|++||+.++.... +... ...........+|...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 169 (351)
T 3f3f_A 91 DQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT-SEMKVLSIPPANHLQS 169 (351)
T ss_dssp TSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE-EEEESCSCCCSSCSCC
T ss_pred CcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc-ccccccccccCCcccc
Confidence 7 56778889998888776 77 8999999999999999998764211 0000 0000011112368889
Q ss_pred eEEEEE--c---CCEEEEEecCCeEEEEECCCCcE--EEEee-eccCEEEEe--eCC----CEEEEEc-CCeEEEEECCC
Q 009993 240 ITSLAL--D---LTRIYSGSWDMTVRVWDRALLKC--LKVLR-HSDWVYGLA--PHD----TTVASTS-GSDVYIWDTNS 304 (520)
Q Consensus 240 v~~l~~--~---~~~l~s~s~dg~v~iwd~~~~~~--~~~~~-~~~~v~~~~--~~~----~~l~~~~-d~~i~iwd~~~ 304 (520)
+.+++| + +..+++++.|+.+.+|+...++. +..+. |...|.++. +++ +++++++ |+.|++||+++
T Consensus 170 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 170 DFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE 249 (351)
T ss_dssp CEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred eeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence 999999 3 78999999999998888887765 44444 888999988 666 6888888 99999999987
Q ss_pred C----------------------------------------------eeeEEeecccccceEEEEecCCCCEEEEEeCCC
Q 009993 305 G----------------------------------------------CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG 338 (520)
Q Consensus 305 ~----------------------------------------------~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg 338 (520)
+ +.+..+. +|...|++++|+|++++|++|+.||
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg 328 (351)
T 3f3f_A 250 KLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD-DHNGEVWSVSWNLTGTILSSAGDDG 328 (351)
T ss_dssp CC---------------------------------------CCSEEEEEEEEEC-TTSSCEEEEEECSSSCCEEEEETTS
T ss_pred CcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe-cccccEEEEEEcCCCCEEEEecCCC
Confidence 5 4455554 6999999999999999999999999
Q ss_pred eEEEEEcccCc
Q 009993 339 AIHMYEIINDC 349 (520)
Q Consensus 339 ~i~iwd~~~~~ 349 (520)
.|++||+.++.
T Consensus 329 ~v~iw~~~~~~ 339 (351)
T 3f3f_A 329 KVRLWKATYSN 339 (351)
T ss_dssp CEEEEEECTTS
T ss_pred cEEEEecCcCc
Confidence 99999999873
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=6.8e-27 Score=228.78 Aligned_cols=234 Identities=11% Similarity=0.078 Sum_probs=162.0
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEE-----EEeCCCCceEEEEe--c--------CCCEEEEEeCC
Q 009993 139 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI-----ASSKPLGCTIRAVA--A--------DKKLLVAGGTD 203 (520)
Q Consensus 139 ~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~-----~~~~~~~~~v~~~~--~--------~~~~l~sg~~d 203 (520)
..|...+....+.+++.+|++|+.|++|+|||+.++... ..+.+|...|.+++ | ++++|++|+.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 445555666666677889999999999999999988653 34678999998876 4 78899999999
Q ss_pred CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC---CEEEEEecCCeEEEEECCCCcEEEEee------
Q 009993 204 GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL---TRIYSGSWDMTVRVWDRALLKCLKVLR------ 274 (520)
Q Consensus 204 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~v~iwd~~~~~~~~~~~------ 274 (520)
++|++||+.++. ....+.+|...|.+++|.+ .+|++|+.|++|++||+++++......
T Consensus 166 ~tv~~Wd~~~~~-------------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~ 232 (393)
T 4gq1_A 166 CTLIIWRLTDEG-------------PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVK 232 (393)
T ss_dssp SEEEEEEEETTE-------------EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CS
T ss_pred CeEEEEECCCCc-------------eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcc
Confidence 999999997652 4556678999999999943 479999999999999998876543321
Q ss_pred --------------------eccCEEEEe---eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEec-----
Q 009993 275 --------------------HSDWVYGLA---PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARS----- 325 (520)
Q Consensus 275 --------------------~~~~v~~~~---~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s----- 325 (520)
|...+.++. +++..+++++ |+++++||+..++....+. .|...+..+.+.
T Consensus 233 ~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~-~~~~~~~~~~~~~~~~~ 311 (393)
T 4gq1_A 233 NPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEIS-DSTMKLGPKNLLPNVQG 311 (393)
T ss_dssp CCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEE
T ss_pred cceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEe-eecCccccEEEcccccc
Confidence 334455554 6889999999 9999999999887666554 344444433333
Q ss_pred -------------C--CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEE
Q 009993 326 -------------H--TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSL 388 (520)
Q Consensus 326 -------------~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~v 388 (520)
| ++.++++|+.||.|++||+.++ .....+.+|..+|++++|+| ++|++++.|| +.+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~------~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~l 384 (393)
T 4gq1_A 312 ISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK------DSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLL 384 (393)
T ss_dssp ECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT------TCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEE
T ss_pred ccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC------cEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEE
Confidence 2 3346778889999999999988 55666778899999999976 7999998776 767
Q ss_pred EeCCc
Q 009993 389 IDVRK 393 (520)
Q Consensus 389 wd~~~ 393 (520)
|.+..
T Consensus 385 vrL~g 389 (393)
T 4gq1_A 385 TRLMG 389 (393)
T ss_dssp EEEGG
T ss_pred EEEeC
Confidence 76644
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=1.4e-25 Score=206.94 Aligned_cols=238 Identities=11% Similarity=0.056 Sum_probs=158.3
Q ss_pred HhhhhhccccccEEEEEEccCCC-EEEEEeCCCeE-EEEEC--CCC----cEEEEeCCCCceEEEEecCCCEEEEEe--C
Q 009993 133 ELIDVLYGHTEAVLTVFVLASAK-LLFTSGYDSIV-RMWHL--EDG----FSIASSKPLGCTIRAVAADKKLLVAGG--T 202 (520)
Q Consensus 133 ~~~~~l~~h~~~V~~l~~~~~~~-~l~sgs~dg~v-~vwd~--~~~----~~~~~~~~~~~~v~~~~~~~~~l~sg~--~ 202 (520)
+.++++++|..+|..+.+.||.. +++.+-..=.+ -++-+ ... .......+|...+..+ ++++.+.+++ .
T Consensus 77 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l-~~g~lv~ss~~g~ 155 (356)
T 2w18_A 77 EKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL-TKRRLVSSSGTLS 155 (356)
T ss_dssp EEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE-TTTEEEEEESSST
T ss_pred eeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec-CCCcEEEecccCC
Confidence 34677788887777777777432 22222111111 11111 100 1111112233334444 4555555543 5
Q ss_pred CCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-----cCCEEEEEecCCeEEEEECCCCcEEEEee-ec
Q 009993 203 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-----DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HS 276 (520)
Q Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-----~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~ 276 (520)
|+.|++|++.... .....+.+|...++.++| ++..|++|+.|++|++||+.++++++++. |.
T Consensus 156 d~~V~~~~~s~dG------------~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~ 223 (356)
T 2w18_A 156 DQQVEVMTFAEDG------------GGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD 223 (356)
T ss_dssp TCEEEEEEECTTS------------CEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC
T ss_pred CCcEEEEEECCCC------------ceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC
Confidence 8999999984421 233445567766666665 45899999999999999999999999996 32
Q ss_pred ---cCEEE--EeeCCCEE------------EEEc-CCeEEEEECCCCeeeEEe----ecccccceEEEEecCCCCEEEEE
Q 009993 277 ---DWVYG--LAPHDTTV------------ASTS-GSDVYIWDTNSGCLLTVV----NGAHVGNTKSLARSHTGDFLFTG 334 (520)
Q Consensus 277 ---~~v~~--~~~~~~~l------------~~~~-d~~i~iwd~~~~~~~~~~----~~~~~~~i~~l~~s~~~~~l~tg 334 (520)
..+.+ ++|++.++ ++|+ |++|++||..+++.+..+ ..+|...+.+..++ +.++++|
T Consensus 224 ~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASg 301 (356)
T 2w18_A 224 SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAI 301 (356)
T ss_dssp ---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEE
T ss_pred cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEE
Confidence 34543 45888876 4566 899999999999887765 24666665555544 8899999
Q ss_pred eCCCeEEEEEcccCccccceeeeeeecCCcCCEE-EEEecC--CEEEEEeCCCcEEEEeC
Q 009993 335 GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN-SLAFEF--PWLVSAAGDGKLSLIDV 391 (520)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~--~~l~s~s~dg~i~vwd~ 391 (520)
+.|++|+|||+.++ +++.++.+|...+. +++|+| ++|++|+.|++|+|||+
T Consensus 302 S~DgTIkIWDl~tG------k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 302 LTSGTIAIWDLLLG------QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ETTSCEEEEETTTC------SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred cCCCcEEEEECCCC------cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 99999999999999 78899999987655 589987 59999999999999995
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.93 E-value=2e-23 Score=207.09 Aligned_cols=234 Identities=13% Similarity=0.103 Sum_probs=191.2
Q ss_pred hhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEE--ecCCCEEE-EEeCCCcEEEEEccc
Q 009993 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AADKKLLV-AGGTDGFIHCWRAVE 213 (520)
Q Consensus 137 ~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~-sg~~dg~i~vwd~~~ 213 (520)
.+.+|.+.|.+++|+|+++++++++.|+.|++||+.+++.+..+..|...+.++ ++++..++ +++.|+.|++||+.+
T Consensus 164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~ 243 (433)
T 3bws_A 164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT 243 (433)
T ss_dssp HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC
Confidence 567999999999999999999999999999999999999998888777666554 58888875 555799999999876
Q ss_pred CcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEe--------cCCeEEEEECCCCcEEEEeeeccCEEEEe
Q 009993 214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS--------WDMTVRVWDRALLKCLKVLRHSDWVYGLA 283 (520)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s--------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~ 283 (520)
+. ....+. +...+.++++ +++++++++ .|+.|++||+.+++.+..+.+...+.++.
T Consensus 244 ~~-------------~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 309 (433)
T 3bws_A 244 KL-------------EIRKTD-KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIV 309 (433)
T ss_dssp TE-------------EEEECC-CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEE
T ss_pred Cc-------------EEEEec-CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEE
Confidence 53 222332 3455889999 667888888 48899999999999888887777777766
Q ss_pred --eCCCEE-EEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC---------------CCeEEEEE
Q 009993 284 --PHDTTV-ASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE---------------DGAIHMYE 344 (520)
Q Consensus 284 --~~~~~l-~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~---------------dg~i~iwd 344 (520)
++++.+ ++++ ++.|++||+.+++.+..+. +...+.+++|+|+++++++++. ||.|++||
T Consensus 310 ~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d 387 (433)
T 3bws_A 310 SGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP--VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVID 387 (433)
T ss_dssp ECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEE
T ss_pred ECCCCCEEEEEecCCCEEEEEECCCCcEEEEec--CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEE
Confidence 778655 5546 8999999999999888775 6778999999999999888876 57999999
Q ss_pred cccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeC-CCcEEEEeCCc
Q 009993 345 IINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG-DGKLSLIDVRK 393 (520)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~-dg~i~vwd~~~ 393 (520)
+.++ ..+..+.. ...+.+++|+| ++|++++. |+.|++|++..
T Consensus 388 ~~~~------~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 388 TTTD------TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TTTT------EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CCCC------cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 9888 55555555 45789999976 57877764 99999999864
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=3.7e-23 Score=209.77 Aligned_cols=324 Identities=12% Similarity=0.071 Sum_probs=222.8
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC-CCCceEEEEecCCCEEEEEeCCCcEEEEEc--ccCcceeeeccCCc
Q 009993 149 FVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK-PLGCTIRAVAADKKLLVAGGTDGFIHCWRA--VEVLPHLFDISGSE 225 (520)
Q Consensus 149 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~--~~~~~~~~~~~~~~ 225 (520)
+|+|++.++++++.|++|.+||..+++.+.++. ++......++|++++|++++.|+.|.+||+ .++.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~---------- 213 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT---------- 213 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE----------
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCc----------
Confidence 378999999999999999999999999999887 555455567899999999999999999999 5542
Q ss_pred cccceEEeccCCCCeEEEEEc------CCEEEEEe-cCCeEEEEECCCCcEEEEeee-----------c-cCEEEEe--e
Q 009993 226 KQNTQFRLWEHEGPITSLALD------LTRIYSGS-WDMTVRVWDRALLKCLKVLRH-----------S-DWVYGLA--P 284 (520)
Q Consensus 226 ~~~~~~~~~~h~~~v~~l~~~------~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~-----------~-~~v~~~~--~ 284 (520)
....+. +...+..++|+ ++++++++ .+++|.+||..+++++..+.. . ..+.++. +
T Consensus 214 ---~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~ 289 (543)
T 1nir_A 214 ---KVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH 289 (543)
T ss_dssp ---EEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS
T ss_pred ---EEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECC
Confidence 233443 44567888884 57888887 489999999999999888762 1 2566665 5
Q ss_pred CCCEE-EEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEE-eCCCeEEEEEcccCccccceeeeeeec
Q 009993 285 HDTTV-ASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTG-GEDGAIHMYEIINDCTEANVLLVATWI 361 (520)
Q Consensus 285 ~~~~l-~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~~~ 361 (520)
++..+ ++.. ++.|.+||..+++.+......+...+..+.|+|+|++++++ ..+++|.+||+.++ +++..+.
T Consensus 290 ~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg------~l~~~i~ 363 (543)
T 1nir_A 290 EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR------RLSALVD 363 (543)
T ss_dssp SSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT------EEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC------eEEEeec
Confidence 55554 4445 79999999988765442111356678889999999987655 45899999999998 4555554
Q ss_pred C----CcCCEEEEEecC---CEEEEEe-CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceee--EEEEe
Q 009993 362 P----HTGPVNSLAFEF---PWLVSAA-GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNL--LSVDI 431 (520)
Q Consensus 362 ~----h~~~v~~l~~~~---~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~ 431 (520)
. |.+....+ ++| ..++++. .|++|.+||+.+..... .. ....+.+.+|...+ ..+++
T Consensus 364 ~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~--~~----------~~~v~~l~~~g~~~~~v~~~p 430 (543)
T 1nir_A 364 VGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ--YA----------WKKVAELQGQGGGSLFIKTHP 430 (543)
T ss_dssp CSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT--TB----------TSEEEEEECSCSCCCCEECCT
T ss_pred cCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch--hc----------CeEEEEEEcCCCCceEEEcCC
Confidence 3 65444444 343 4666765 68999999998621100 00 12233344454443 44566
Q ss_pred cCCEEEEec-------CCCeEEEEeCCchHhHHHHhhh--hcccccchhhhhccceeeeccCCCcccccccccccCCCCC
Q 009993 432 GADRIVCGG-------EEGIVRIWNFSQAFEIERRARA--LRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNG 502 (520)
Q Consensus 432 ~~~~l~sg~-------~Dg~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~~~~~~~~~ 502 (520)
++++|++++ .+++|.+||+.+++.+.+.... ..+. ....+++..++|+|||+.+..+....+. ..
T Consensus 431 dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~~g~~~~~s~~~~~~---~~ 504 (543)
T 1nir_A 431 KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADL---GEGAKRVVQPEYNKRGDEVWFSVWNGKN---DS 504 (543)
T ss_dssp TCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCC---CSSCCEEEEEEECSSSSEEEEEEECCTT---SC
T ss_pred CCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhccc---CCCCCceEeccCCCCCCEEEEEeecCCC---CC
Confidence 677888887 2789999999987643111000 0000 1114567899999999999977654322 11
Q ss_pred Ccceeeecc
Q 009993 503 NRRSVWHNK 511 (520)
Q Consensus 503 ~~~~~~~~~ 511 (520)
+...||..+
T Consensus 505 ~~i~v~D~~ 513 (543)
T 1nir_A 505 SALVVVDDK 513 (543)
T ss_dssp CEEEEEETT
T ss_pred CeEEEEECC
Confidence 234677665
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=6.2e-23 Score=201.86 Aligned_cols=289 Identities=13% Similarity=0.048 Sum_probs=203.4
Q ss_pred cEEEEEEccCC-CEEEEEe----CCC----eEEEEEC--CCCcEE--EEeCCCCceEEEEe--c--------------CC
Q 009993 144 AVLTVFVLASA-KLLFTSG----YDS----IVRMWHL--EDGFSI--ASSKPLGCTIRAVA--A--------------DK 194 (520)
Q Consensus 144 ~V~~l~~~~~~-~~l~sgs----~dg----~v~vwd~--~~~~~~--~~~~~~~~~v~~~~--~--------------~~ 194 (520)
.|...+|.+.| +++++|+ .|| +|++||+ .+++.+ ..+.+|...+..+. + .+
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~ 143 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR 143 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence 45555666665 4566776 467 8999999 899877 44677766554433 1 15
Q ss_pred CEEEEEeCC------CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCC---eEEEEE
Q 009993 195 KLLVAGGTD------GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM---TVRVWD 263 (520)
Q Consensus 195 ~~l~sg~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg---~v~iwd 263 (520)
..++.++.+ +.|++||+..+ ....+.+|...|.+++| ++++|++++.|+ .|++||
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g~--------------~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d 209 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDGY--------------NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQT 209 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSC--------------SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CEEEEEEecCCCCccceEEEEcCCCC--------------CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEE
Confidence 666666654 79999998643 34556678999999999 778999999885 999999
Q ss_pred CCCCcEEEEeeeccCEEEEe--eCCCEEE-EEc-CC--eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC-
Q 009993 264 RALLKCLKVLRHSDWVYGLA--PHDTTVA-STS-GS--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE- 336 (520)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~--~~~~~l~-~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~- 336 (520)
+.+++......+...+.++. |+++.|+ +++ ++ .|++||+.+++.. .+. .|...+.+++|+|+|++|++++.
T Consensus 210 ~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~-~~~~~~~~~~~spdg~~l~~~s~~ 287 (415)
T 2hqs_A 210 LANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVT-DGRSNNTEPTWFPDSQNLAFTSDQ 287 (415)
T ss_dssp TTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECC-CCSSCEEEEEECTTSSEEEEEECT
T ss_pred CCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCc-CCCCcccceEECCCCCEEEEEECC
Confidence 99998876555777787766 8999877 555 44 4999999988763 443 57888999999999999888876
Q ss_pred CC--eEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCC---CcEEEEeCCcccccCCCCCCCceeee
Q 009993 337 DG--AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGD---GKLSLIDVRKLLRSGRPTSGKRVSRV 409 (520)
Q Consensus 337 dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~ 409 (520)
++ .|++||+.++. ...+..|...+.+++|+| ++|++++.+ +.|++||+.++..
T Consensus 288 ~g~~~i~~~d~~~~~-------~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~------------- 347 (415)
T 2hqs_A 288 AGRPQVYKVNINGGA-------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV------------- 347 (415)
T ss_dssp TSSCEEEEEETTSSC-------CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-------------
T ss_pred CCCcEEEEEECCCCC-------EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-------------
Confidence 45 67777887762 233455667889999976 578777754 5899999987421
Q ss_pred eecCCCcccccCcceeeEEEEecCCEEEEecCCC---eEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCC
Q 009993 410 IEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEG---IVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKG 485 (520)
Q Consensus 410 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 485 (520)
............++++++++|++++.|+ .|++||+..+.. .. .......+..++|+|.-
T Consensus 348 ------~~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~-~~----------l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 348 ------QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-AR----------LPATDGQVKFPAWSPYL 409 (415)
T ss_dssp ------EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EE----------CCCSSSEEEEEEECCCC
T ss_pred ------EEecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcE-EE----------eeCCCCCCcCCcccccc
Confidence 1111112233455666777888888777 799999874321 11 11122345677777754
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=3.2e-22 Score=202.85 Aligned_cols=304 Identities=13% Similarity=0.079 Sum_probs=211.2
Q ss_pred CcccHH----Hhhhhhc-cccccEEEEEEccCCCEEEEEeCCCeEEEEEC--CCCcEEEEeCCCCc-eEEEEec----CC
Q 009993 127 DDKSWK----ELIDVLY-GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHL--EDGFSIASSKPLGC-TIRAVAA----DK 194 (520)
Q Consensus 127 ~~~~W~----~~~~~l~-~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~--~~~~~~~~~~~~~~-~v~~~~~----~~ 194 (520)
....|+ +++.++. +|. +.+++|+|+|++|++++.|++|++||+ .+++.+.++..+.. .-.+++| ++
T Consensus 160 ~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg 237 (543)
T 1nir_A 160 QIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYED 237 (543)
T ss_dssp EEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTT
T ss_pred eEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCC
Confidence 346676 4456666 444 899999999999999999999999999 88888888874433 2345668 99
Q ss_pred CEEEEEeC-CCcEEEEEcccCcceeeeccCCccccceEEecc----------C-CCCeEEEEEc--C-CEEEEEecCCeE
Q 009993 195 KLLVAGGT-DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE----------H-EGPITSLALD--L-TRIYSGSWDMTV 259 (520)
Q Consensus 195 ~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~----------h-~~~v~~l~~~--~-~~l~s~s~dg~v 259 (520)
+++++++. +++|.+||..+++. ...+.. | ...+.++.++ + .++++...+++|
T Consensus 238 ~~l~v~~~~~~~v~v~D~~t~~~-------------~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i 304 (543)
T 1nir_A 238 RYTIAGAYWPPQFAIMDGETLEP-------------KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV 304 (543)
T ss_dssp TEEEEEEEESSEEEEEETTTCCE-------------EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred CEEEEEEccCCeEEEEecccccc-------------ceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeE
Confidence 99999885 89999999877642 112211 2 2378888883 3 457778889999
Q ss_pred EEEECCCCcEEE--EeeeccCEEE--EeeCCCEEEEEc--CCeEEEEECCCCeeeEEeecc---cccceEEEEecCC-CC
Q 009993 260 RVWDRALLKCLK--VLRHSDWVYG--LAPHDTTVASTS--GSDVYIWDTNSGCLLTVVNGA---HVGNTKSLARSHT-GD 329 (520)
Q Consensus 260 ~iwd~~~~~~~~--~~~~~~~v~~--~~~~~~~l~~~~--d~~i~iwd~~~~~~~~~~~~~---~~~~i~~l~~s~~-~~ 329 (520)
.+||..+.+.+. .+.+...+.. ++|+++++++++ +++|.+||+.+++++..+..+ |.+....+ ++|+ +.
T Consensus 305 ~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~ 383 (543)
T 1nir_A 305 LLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGP 383 (543)
T ss_dssp EEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEE
T ss_pred EEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCcc
Confidence 999998876544 4444444544 458999776654 799999999999998887632 55444443 4677 55
Q ss_pred EEEEEe-CCCeEEEEEcccCcc-ccceeeeeeecCCcCCEEEEEecC--CEEEEEe-------CCCcEEEEeCCcccccC
Q 009993 330 FLFTGG-EDGAIHMYEIINDCT-EANVLLVATWIPHTGPVNSLAFEF--PWLVSAA-------GDGKLSLIDVRKLLRSG 398 (520)
Q Consensus 330 ~l~tg~-~dg~i~iwd~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s-------~dg~i~vwd~~~~~~~~ 398 (520)
.++++. .|++|.+||+.+... ....+.+.++.+|.+.+..+.++| ++|++++ .+++|.|||+.+.....
T Consensus 384 ~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~ 463 (543)
T 1nir_A 384 VWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKY 463 (543)
T ss_dssp EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCC
T ss_pred EEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCe
Confidence 666665 589999999987211 112378899999998889999987 6888887 27799999999863221
Q ss_pred CCCCCCceeeeeecCCCcccccCcceeeEEEEe--cCCEEEEe-----cCCCeEEEEeCCchHhH
Q 009993 399 RPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--GADRIVCG-----GEEGIVRIWNFSQAFEI 456 (520)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg-----~~Dg~v~iwd~~~~~~~ 456 (520)
. ...+... .-+..+...+..+.+ +++.++++ +.|+.|.|||..+++.+
T Consensus 464 ~---------~~~v~~~-~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 464 Q---------VLPIAEW-ADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp E---------EECHHHH-HCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred E---------Eeechhh-cccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 0 0000000 001223344555554 55655543 35899999999988654
No 130
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.88 E-value=5.7e-21 Score=202.85 Aligned_cols=303 Identities=13% Similarity=-0.014 Sum_probs=212.7
Q ss_pred cccEEEEEEccCCCEEEEEeC-CC-----eEEEEECCCCcEEEEeCCCC--------------------------ceEEE
Q 009993 142 TEAVLTVFVLASAKLLFTSGY-DS-----IVRMWHLEDGFSIASSKPLG--------------------------CTIRA 189 (520)
Q Consensus 142 ~~~V~~l~~~~~~~~l~sgs~-dg-----~v~vwd~~~~~~~~~~~~~~--------------------------~~v~~ 189 (520)
...|.+++|+|||++|++++. |+ .|++||+.+++....+..+. ..-.+
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 557899999999999999998 88 99999999998776665432 22346
Q ss_pred EecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCC
Q 009993 190 VAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALL 267 (520)
Q Consensus 190 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~ 267 (520)
++|||++|++++. +.|.+||+.++.. .....+..|...+.+++| |+++|++++ ++.|++||+.++
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~-----------~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g 182 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGK-----------AAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASG 182 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCST-----------TSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTT
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCc-----------ceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCC
Confidence 7799999999987 9999999876510 012234567788999999 788898887 469999999988
Q ss_pred cEEEEee-ecc------------------CEEEEeeCCCEEEEEc-CC--------------------------------
Q 009993 268 KCLKVLR-HSD------------------WVYGLAPHDTTVASTS-GS-------------------------------- 295 (520)
Q Consensus 268 ~~~~~~~-~~~------------------~v~~~~~~~~~l~~~~-d~-------------------------------- 295 (520)
+...... +.. .-..++|+++.|+.++ |+
T Consensus 183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 7765544 222 2245669999888876 54
Q ss_pred -eEEEEECCC-CeeeEEeec-ccccceEEEEecCCCCEEEEEeC-----CCeEEEEEcccCccccceeeeeeecCCcC--
Q 009993 296 -DVYIWDTNS-GCLLTVVNG-AHVGNTKSLARSHTGDFLFTGGE-----DGAIHMYEIINDCTEANVLLVATWIPHTG-- 365 (520)
Q Consensus 296 -~i~iwd~~~-~~~~~~~~~-~~~~~i~~l~~s~~~~~l~tg~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~h~~-- 365 (520)
.|++||+.+ ++....... .|...+..++| |||++|++++. +..|++||+.++ .....+..+..
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g------~~~~~~~~~~~~~ 335 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN------QQRVLAHETSPTW 335 (741)
T ss_dssp EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC------CEEEEEEEECSSC
T ss_pred eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC------ceEEEEEcCCCCc
Confidence 789999998 776544332 47788999999 99999987654 567999999887 33333333332
Q ss_pred --CEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceee---EEEEecCCEE-E
Q 009993 366 --PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNL---LSVDIGADRI-V 437 (520)
Q Consensus 366 --~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~l-~ 437 (520)
.+..++|+| +++++++.||.++||.+... .. ...+..+...+ ..++++++.| +
T Consensus 336 ~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~------------------~~-~~~l~~~~~~v~~~~~~s~dg~~l~~ 396 (741)
T 2ecf_A 336 VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSK------------------GK-AAALTHGNWSVDELLAVDEKAGLAYF 396 (741)
T ss_dssp CCCCSCCEECTTSCEEEEECTTSSCEEEEECSS------------------SC-EEESCCSSSCEEEEEEEETTTTEEEE
T ss_pred CCcCCceEECCCCeEEEEecCCCccEEEEEcCC------------------CC-eeeeeecceEEEeEeEEeCCCCEEEE
Confidence 446788865 68888999998888877531 11 12223333333 3467777755 5
Q ss_pred EecCCC--eEEEEeCCc-hHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccccc
Q 009993 438 CGGEEG--IVRIWNFSQ-AFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVA 494 (520)
Q Consensus 438 sg~~Dg--~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~ 494 (520)
+++.|+ .++||++.. +..+. ... . ......++|+|||++++.....
T Consensus 397 ~~~~~~~~~~~l~~~~~~g~~~~-------~l~--~--~~~~~~~~~spdg~~l~~~~~~ 445 (741)
T 2ecf_A 397 RAGIESARESQIYAVPLQGGQPQ-------RLS--K--APGMHSASFARNASVYVDSWSN 445 (741)
T ss_dssp EECSSCTTCBEEEEEETTCCCCE-------ECC--C--SCSEEEEEECTTSSEEEEEEEE
T ss_pred EEeCCCCceEEEEEEEcCCCCee-------ecc--c--CCCceEEEECCCCCEEEEEecC
Confidence 566666 899999864 21111 111 1 2234588999999998876443
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.87 E-value=1.2e-20 Score=185.64 Aligned_cols=262 Identities=10% Similarity=-0.015 Sum_probs=193.5
Q ss_pred cccHHH--h----h--hhhccccccEEEEEEcc--------------CCCEEEEEeCC------CeEEEEECCCCcEEEE
Q 009993 128 DKSWKE--L----I--DVLYGHTEAVLTVFVLA--------------SAKLLFTSGYD------SIVRMWHLEDGFSIAS 179 (520)
Q Consensus 128 ~~~W~~--~----~--~~l~~h~~~V~~l~~~~--------------~~~~l~sgs~d------g~v~vwd~~~~~~~~~ 179 (520)
.++|+. . + ..+.+|...+..+++++ .+..++.++.+ +.|++||+.. .....
T Consensus 95 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~ 173 (415)
T 2hqs_A 95 YQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFV 173 (415)
T ss_dssp EEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEE
T ss_pred EEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEE
Confidence 477764 2 2 44678888777777664 15566666554 7999999974 44566
Q ss_pred eCCCCceEEE--EecCCCEEEEEeCCC---cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEE-
Q 009993 180 SKPLGCTIRA--VAADKKLLVAGGTDG---FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIY- 251 (520)
Q Consensus 180 ~~~~~~~v~~--~~~~~~~l~sg~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~- 251 (520)
+.+|...+.+ ++|+++.|++++.++ .|++||+.++. ...+..|...+.+++| +++.|+
T Consensus 174 l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~--------------~~~l~~~~~~~~~~~~spdg~~la~ 239 (415)
T 2hqs_A 174 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--------------VRQVASFPRHNGAPAFSPDGSKLAF 239 (415)
T ss_dssp EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--------------EEEEECCSSCEEEEEECTTSSEEEE
T ss_pred EeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc--------------EEEeecCCCcccCEEEcCCCCEEEE
Confidence 6667666665 459999999999885 99999998763 2345678889999999 677777
Q ss_pred EEecCC--eEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc--CC--eEEEEECCCCeeeEEeecccccceEEEE
Q 009993 252 SGSWDM--TVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS--GS--DVYIWDTNSGCLLTVVNGAHVGNTKSLA 323 (520)
Q Consensus 252 s~s~dg--~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~--d~--~i~iwd~~~~~~~~~~~~~~~~~i~~l~ 323 (520)
+++.|+ .|++||+.+++......+...+.++. |+++.|+.++ ++ .|++||+.+++... +. .+...+.+++
T Consensus 240 ~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l~-~~~~~~~~~~ 317 (415)
T 2hqs_A 240 ALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-IT-WEGSQNQDAD 317 (415)
T ss_dssp EECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CC-CSSSEEEEEE
T ss_pred EEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-Ee-cCCCcccCeE
Confidence 666665 49999999988755445777787766 8999888777 33 68888998886433 33 3667889999
Q ss_pred ecCCCCEEEEEeCC---CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCC---cEEEEeCCccc
Q 009993 324 RSHTGDFLFTGGED---GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDG---KLSLIDVRKLL 395 (520)
Q Consensus 324 ~s~~~~~l~tg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg---~i~vwd~~~~~ 395 (520)
|+|+|++|++++.+ +.|++||+.++. . ..+..|. .+.+++|+| ++|++++.++ .|++||+...
T Consensus 318 ~spdG~~l~~~~~~~g~~~i~~~d~~~~~------~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~- 388 (415)
T 2hqs_A 318 VSSDGKFMVMVSSNGGQQHIAKQDLATGG------V-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR- 388 (415)
T ss_dssp ECTTSSEEEEEEECSSCEEEEEEETTTCC------E-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC-
T ss_pred ECCCCCEEEEEECcCCceEEEEEECCCCC------E-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC-
Confidence 99999999987764 589999998872 2 3344554 889999976 6788888776 7999998642
Q ss_pred ccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC
Q 009993 396 RSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD 434 (520)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 434 (520)
....+.+|...|.+++|++.
T Consensus 389 -------------------~~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 389 -------------------FKARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp -------------------CEEECCCSSSEEEEEEECCC
T ss_pred -------------------cEEEeeCCCCCCcCCccccc
Confidence 23345667778888888765
No 132
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.86 E-value=6.6e-20 Score=201.51 Aligned_cols=320 Identities=9% Similarity=0.041 Sum_probs=223.6
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCC------CeEEEEECCCCcEEEEeCCCCceE---------EEEecCCCEEEE
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYD------SIVRMWHLEDGFSIASSKPLGCTI---------RAVAADKKLLVA 199 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~d------g~v~vwd~~~~~~~~~~~~~~~~v---------~~~~~~~~~l~s 199 (520)
.+.+.+|.+.|.+++|||||++|++++.+ ..|.+|++.+++ ...+..|...+ .+++|+|+.+++
T Consensus 45 ~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~ 123 (1045)
T 1k32_A 45 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIIS 123 (1045)
T ss_dssp EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEEE
Confidence 45678999999999999999999988643 479999998876 56677777665 566799997777
Q ss_pred EeCC------CcEEEEEcccCcceeeeccCC------------------------------------ccccceEEeccCC
Q 009993 200 GGTD------GFIHCWRAVEVLPHLFDISGS------------------------------------EKQNTQFRLWEHE 237 (520)
Q Consensus 200 g~~d------g~i~vwd~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~h~ 237 (520)
++.+ ..|.+|++.++.......... ........+.+|.
T Consensus 124 ~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~ 203 (1045)
T 1k32_A 124 TDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS 203 (1045)
T ss_dssp ECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS
T ss_pred ECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC
Confidence 7754 357788877664322111000 0001223456899
Q ss_pred CCeEEEEEcCCE-EEEEecCCeEEEEECCC-CcEEEEee-ec-cCEEEEeeCCCEEEEEcCCeEEEEECCCCeeeEEeec
Q 009993 238 GPITSLALDLTR-IYSGSWDMTVRVWDRAL-LKCLKVLR-HS-DWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNG 313 (520)
Q Consensus 238 ~~v~~l~~~~~~-l~s~s~dg~v~iwd~~~-~~~~~~~~-~~-~~v~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~ 313 (520)
..+.++.|.++. +++++.|+++.+|.+.. +.....+. +. ....+++++++.++.+.++.|++||+.... +..+..
T Consensus 204 ~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~-l~~l~~ 282 (1045)
T 1k32_A 204 THVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEK-IEKIEI 282 (1045)
T ss_dssp SCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCC-EEECCC
T ss_pred CcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceE-eeeecc
Confidence 999999996655 55677789999997653 33334443 32 235577799999999899999999995443 334432
Q ss_pred ----------ccccceEEEEec-CCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcC-CEEEEEec-CCEEEEE
Q 009993 314 ----------AHVGNTKSLARS-HTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG-PVNSLAFE-FPWLVSA 380 (520)
Q Consensus 314 ----------~~~~~i~~l~~s-~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~-~~~l~s~ 380 (520)
.|...+.+++|+ |+|++|++++ ++.|.+|++..+ . ...+..|.. .+..++|+ ++.|+++
T Consensus 283 ~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~------~-~~~~~~~~~~~~~~~~~sdg~~l~~~ 354 (1045)
T 1k32_A 283 GDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGT------Y-VLKVPEPLRIRYVRRGGDTKVAFIHG 354 (1045)
T ss_dssp CCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSS------B-EEECSCCSCEEEEEECSSSEEEEEEE
T ss_pred CcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCC------c-eEEccCCCcceEEeeeEcCCCeEEEE
Confidence 134468899999 9999999887 889999998876 2 233556776 88899997 3478888
Q ss_pred eCCCcEE-EEeCCcccccCCCCCCCceeeeeecCCCcccccCccee--eEEEEecCCEEEEecCCCeEEEEeCCchHhHH
Q 009993 381 AGDGKLS-LIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECN--LLSVDIGADRIVCGGEEGIVRIWNFSQAFEIE 457 (520)
Q Consensus 381 s~dg~i~-vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~ 457 (520)
+.++.+. +||+.+... .. +.+|... ..++++++++|++++.++.|++||+.++....
T Consensus 355 s~~~~l~~~~d~~~~~~-------------------~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~ 414 (1045)
T 1k32_A 355 TREGDFLGIYDYRTGKA-------------------EK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV 414 (1045)
T ss_dssp ETTEEEEEEEETTTCCE-------------------EE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred ECCCceEEEEECCCCCc-------------------eE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEE
Confidence 8888888 889875311 11 1133333 44556667799999999999999998764321
Q ss_pred HHhhhhcccccchhhhhccceeeeccCCCcccccccc
Q 009993 458 RRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVA 494 (520)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~ 494 (520)
. ..........++|+|||++++.++..
T Consensus 415 ~----------~~~~~~~v~~~~~SpDG~~la~~~~~ 441 (1045)
T 1k32_A 415 I----------ERSREAMITDFTISDNSRFIAYGFPL 441 (1045)
T ss_dssp E----------EECSSSCCCCEEECTTSCEEEEEEEE
T ss_pred e----------ccCCCCCccceEECCCCCeEEEEecC
Confidence 1 11122335789999999999887654
No 133
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.85 E-value=9.3e-19 Score=166.77 Aligned_cols=278 Identities=9% Similarity=-0.004 Sum_probs=183.3
Q ss_pred EEccCCC-EEEEEeCCCeEEEEECCCCcEEEEeCCCCce-EEEEecCCCEEEEEeC-CCcEEEEEcccCcceeeeccCCc
Q 009993 149 FVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSKPLGCT-IRAVAADKKLLVAGGT-DGFIHCWRAVEVLPHLFDISGSE 225 (520)
Q Consensus 149 ~~~~~~~-~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~ 225 (520)
.|.++++ .+++++.++.|.+||+.+++.+..+..+... ..+++++++++++++. ++.|.+||..++..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~--------- 74 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPP--------- 74 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEEEEEECSSSCEEEEEESTTCEEEEEECSSSSC---------
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcceEEEcCCCCEEEEEeCCCCeEEEEECCCCce---------
Confidence 3555544 4778888999999999999888776644333 4556699997776665 89999999987631
Q ss_pred cccceEEeccCCCCeEEEEE--cCCEEEEEecCC---eEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc--CCe
Q 009993 226 KQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM---TVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS--GSD 296 (520)
Q Consensus 226 ~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg---~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~--d~~ 296 (520)
....+..+..+..++++ ++++++++..++ .|.+||+.+++.+..+.......++. |++++++++. ++.
T Consensus 75 ---~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 151 (331)
T 3u4y_A 75 ---KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSAN 151 (331)
T ss_dssp ---EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTT
T ss_pred ---eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCc
Confidence 13344455555554788 678888655553 99999999999988887655566655 8887665554 578
Q ss_pred -EEEEECCCCeeeE----EeecccccceEEEEecCCCCEEEE-EeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEE
Q 009993 297 -VYIWDTNSGCLLT----VVNGAHVGNTKSLARSHTGDFLFT-GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL 370 (520)
Q Consensus 297 -i~iwd~~~~~~~~----~~~~~~~~~i~~l~~s~~~~~l~t-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l 370 (520)
|.+|++.....+. ... .....+..++|+|+|+++++ +..++.|++||+.++... ..+..+.. ...+..+
T Consensus 152 ~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~---~~~~~~~~-~~~~~~~ 226 (331)
T 3u4y_A 152 TVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI---TLLNAVGT-NNLPGTI 226 (331)
T ss_dssp EEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC---EEEEEEEC-SSCCCCE
T ss_pred eEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc---ceeeeccC-CCCCceE
Confidence 9999987643321 111 23456889999999996654 556899999999887320 11444443 3567889
Q ss_pred EecC--CEEEEE-eCCCcEEEEeCCcccccCCCCCCCceeeeeecCCC--cccccCcceeeEEEEecCCEE-EEecCCCe
Q 009993 371 AFEF--PWLVSA-AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPP--QRMLHGFECNLLSVDIGADRI-VCGGEEGI 444 (520)
Q Consensus 371 ~~~~--~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~l-~sg~~Dg~ 444 (520)
+|+| ++|+.+ ..++.|.+||+.++.... +..+... ............++++++++| +++..++.
T Consensus 227 ~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~ 296 (331)
T 3u4y_A 227 VVSRDGSTVYVLTESTVDVFNFNQLSGTLSF----------VKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRE 296 (331)
T ss_dssp EECTTSSEEEEECSSEEEEEEEETTTTEEEE----------EEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTE
T ss_pred EECCCCCEEEEEEcCCCEEEEEECCCCceee----------ecccccccccCCCCcccccceEECCCCCEEEEecCCCCc
Confidence 9976 556555 457889999998753210 0000000 000001111335778888865 55566779
Q ss_pred EEEEeCCch
Q 009993 445 VRIWNFSQA 453 (520)
Q Consensus 445 v~iwd~~~~ 453 (520)
|.+||+...
T Consensus 297 v~v~d~~~~ 305 (331)
T 3u4y_A 297 LKVFTISGK 305 (331)
T ss_dssp EEEEETTSC
T ss_pred EEEEEecCC
Confidence 999999864
No 134
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.85 E-value=3.5e-20 Score=196.21 Aligned_cols=307 Identities=7% Similarity=-0.011 Sum_probs=202.2
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCC-----ceEEEEecCCCEEEEEeCC---------CcEEEE
Q 009993 144 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-----CTIRAVAADKKLLVAGGTD---------GFIHCW 209 (520)
Q Consensus 144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~l~sg~~d---------g~i~vw 209 (520)
.+.+++|+|||+++++ +.||+|++||+.+++....+..|. ..-.+++|||++|++++.+ +.|.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678899999997776 789999999999998887777665 3456778999999999875 778899
Q ss_pred EcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCE-------
Q 009993 210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWV------- 279 (520)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v------- 279 (520)
|+.++... ......+|...+..++| ||+.|++++. +.|++||+.+++...... +...+
T Consensus 97 d~~~~~~~-----------~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~ 164 (723)
T 1xfd_A 97 KIPHGDPQ-----------SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSD 164 (723)
T ss_dssp ESSSCCCE-----------ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECC
T ss_pred ECCCCceE-----------eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccc
Confidence 99876421 11112245555778888 7788988886 799999999987766554 22222
Q ss_pred -------------EEEeeCCCEEEEEc-CC----------------------------------eEEEEECCCCeeeEEe
Q 009993 280 -------------YGLAPHDTTVASTS-GS----------------------------------DVYIWDTNSGCLLTVV 311 (520)
Q Consensus 280 -------------~~~~~~~~~l~~~~-d~----------------------------------~i~iwd~~~~~~~~~~ 311 (520)
..++|+++.|+.++ ++ .|++||+.+++....+
T Consensus 165 ~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l 244 (723)
T 1xfd_A 165 WLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEM 244 (723)
T ss_dssp HHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEEC
T ss_pred eeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEe
Confidence 34459999998877 42 7999999998865555
Q ss_pred ecc-----cccceEEEEecCCCCEEEEEeC----CCeEEEEEcccCccccceeeeeeec-CCcCCE----EEEEecC--C
Q 009993 312 NGA-----HVGNTKSLARSHTGDFLFTGGE----DGAIHMYEIINDCTEANVLLVATWI-PHTGPV----NSLAFEF--P 375 (520)
Q Consensus 312 ~~~-----~~~~i~~l~~s~~~~~l~tg~~----dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v----~~l~~~~--~ 375 (520)
... +...+..++|+|||+++++... +..|++||+.++. ....+. .+...+ ..++|+| +
T Consensus 245 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~------~~~~~~~~~~~~~~~~~~~~~~spdg~ 318 (723)
T 1xfd_A 245 MPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV------CTKKHEDESEAWLHRQNEEPVFSKDGR 318 (723)
T ss_dssp CCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC------EEEEEEEECSSCCCCCCCCCEECTTSC
T ss_pred eCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc------ceEEEEeccCCEEeccCCCceEcCCCC
Confidence 421 2567899999999998877643 3579999998873 333322 233333 3678876 4
Q ss_pred EEEE--EeCCC------cEEEEeC-CcccccCCCCCCCceeeeeecCCCccccc-Ccc--eeeEEEEecCCEEEEecC-C
Q 009993 376 WLVS--AAGDG------KLSLIDV-RKLLRSGRPTSGKRVSRVIEVEPPQRMLH-GFE--CNLLSVDIGADRIVCGGE-E 442 (520)
Q Consensus 376 ~l~s--~s~dg------~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~v~~~~~~~~~l~sg~~-D 442 (520)
.|+. +..++ .|.+||+ .+... .....+. ++. ..+.+++++++.|+..+. +
T Consensus 319 ~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-----------------~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~ 381 (723)
T 1xfd_A 319 KFFFIRAIPQGGRGKFYHITVSSSQPNSSN-----------------DNIQSITSGDWDVTKILAYDEKGNKIYFLSTED 381 (723)
T ss_dssp SEEEEEEECCSSSSCEEEEEEECSSCCSSS-----------------CCCCBSCCSSSCEEEEEEEETTTTEEEEEESSS
T ss_pred eEEEEEecccCCCcceeEEEEEeccCCCCc-----------------cceeEeecCCeEEEeeeEEcCCCCEEEEEEcCC
Confidence 4543 55677 5677773 33210 0011111 111 123567888887765544 4
Q ss_pred --CeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCccccc
Q 009993 443 --GIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQC 491 (520)
Q Consensus 443 --g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 491 (520)
+.++||++....... .......-........++|+|||++++..
T Consensus 382 ~~~~~~l~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 382 LPRRRQLYSANTVGNFN-----RQCLSCDLVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp CTTCCEEEEECSSTTCC-----CBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred CCcceEEEEEeCCCCCC-----cceecccccCCCCeEEEEECCCCCEEEEE
Confidence 889999987532100 00000000012234678999999988864
No 135
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.84 E-value=4.3e-18 Score=163.55 Aligned_cols=233 Identities=11% Similarity=0.030 Sum_probs=171.8
Q ss_pred ccccEEEEEEccCCCEEEEEeC-------CCeEEEEECCCCcEEEEeCCC-CceEEEEecCCCEEEE-EeCCCcEEEEEc
Q 009993 141 HTEAVLTVFVLASAKLLFTSGY-------DSIVRMWHLEDGFSIASSKPL-GCTIRAVAADKKLLVA-GGTDGFIHCWRA 211 (520)
Q Consensus 141 h~~~V~~l~~~~~~~~l~sgs~-------dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~l~s-g~~dg~i~vwd~ 211 (520)
....+..++|+|+++++++++. ++.|.+||..+++.+..+... ...-.+++++++.+++ +..++.|.+||.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 4467889999999998888874 568999999999888776532 2334567899986554 555799999999
Q ss_pred ccCcceeeeccCCccccceEEeccCCC---------CeEEEEE--cCCEEEEEe--cCCeEEEEECCCCcEEEEee-ecc
Q 009993 212 VEVLPHLFDISGSEKQNTQFRLWEHEG---------PITSLAL--DLTRIYSGS--WDMTVRVWDRALLKCLKVLR-HSD 277 (520)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~l~~--~~~~l~s~s--~dg~v~iwd~~~~~~~~~~~-~~~ 277 (520)
.++.. ...+..+.. .+.++++ +++++++++ .++.|.+||..+++.+..+. +..
T Consensus 119 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 185 (353)
T 3vgz_A 119 KTGEV-------------KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGK 185 (353)
T ss_dssp TTCCE-------------EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCT
T ss_pred CCCee-------------EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCC
Confidence 87642 222222221 2677888 677777766 47899999999999988887 444
Q ss_pred CEE--EEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeec---ccccceEEEEecCCCCEEEEEeC-CCeEEEEEcccCcc
Q 009993 278 WVY--GLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNG---AHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIINDCT 350 (520)
Q Consensus 278 ~v~--~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~---~~~~~i~~l~~s~~~~~l~tg~~-dg~i~iwd~~~~~~ 350 (520)
.+. .+.++++.++++. ++.|.+||+.+++....+.. ++...+..++|+|+++++++++. ++.|.+||+.++
T Consensus 186 ~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~-- 263 (353)
T 3vgz_A 186 MSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG-- 263 (353)
T ss_dssp TCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC--
T ss_pred ccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC--
Confidence 444 4558999888888 89999999999998877763 24556888999999997776665 599999999887
Q ss_pred ccceeeeeeecCCcCCEEEEEecC--CEEEEE-eCCCcEEEEeCCcc
Q 009993 351 EANVLLVATWIPHTGPVNSLAFEF--PWLVSA-AGDGKLSLIDVRKL 394 (520)
Q Consensus 351 ~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~-s~dg~i~vwd~~~~ 394 (520)
..+..+.... ...++|+| ++++++ ..++.|.+||+.++
T Consensus 264 ----~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 264 ----NILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp ----CEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred ----cEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 3444443332 24577865 555544 47899999999874
No 136
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.84 E-value=3.1e-19 Score=170.28 Aligned_cols=259 Identities=12% Similarity=-0.001 Sum_probs=183.5
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEeC-CC---CceEEEEecCCCEE-EEEeCCCcEEEEEcccCcceeeeccCCccccc
Q 009993 155 KLLFTSGYDSIVRMWHLEDGFSIASSK-PL---GCTIRAVAADKKLL-VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNT 229 (520)
Q Consensus 155 ~~l~sgs~dg~v~vwd~~~~~~~~~~~-~~---~~~v~~~~~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 229 (520)
+++++++.++.|.+||+.+++.+..+. ++ ...-.+++++++.+ +++..++.|.+||+.++..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~------------- 68 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET------------- 68 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-------------
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe-------------
Confidence 478999999999999999998888775 33 24456788999766 4556678999999977642
Q ss_pred eEEec-c----CCCCeEEEEE--cCCEEEEEe------------cCCeEEEEECCCCcEEEEeeeccCEEE--EeeCCCE
Q 009993 230 QFRLW-E----HEGPITSLAL--DLTRIYSGS------------WDMTVRVWDRALLKCLKVLRHSDWVYG--LAPHDTT 288 (520)
Q Consensus 230 ~~~~~-~----h~~~v~~l~~--~~~~l~s~s------------~dg~v~iwd~~~~~~~~~~~~~~~v~~--~~~~~~~ 288 (520)
...+. + |...+.++++ +++++++++ .++.|.+||+.+++.+..+.....+.+ +++++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~ 148 (337)
T 1pby_B 69 LGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSK 148 (337)
T ss_dssp EEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSC
T ss_pred EeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCE
Confidence 11111 1 1224567788 677888886 579999999999988887764444443 5589998
Q ss_pred EEEEcCCeEEEEECCCCeeeEEeeccc-ccceEEEEecCCCCEEEEEeCCC------------------------eEEEE
Q 009993 289 VASTSGSDVYIWDTNSGCLLTVVNGAH-VGNTKSLARSHTGDFLFTGGEDG------------------------AIHMY 343 (520)
Q Consensus 289 l~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~tg~~dg------------------------~i~iw 343 (520)
++++ ++.|++||+.+++....+..++ ..+ +.|+|++..++..+.++ .|.+|
T Consensus 149 l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 224 (337)
T 1pby_B 149 LYGL-GRDLHVMDPEAGTLVEDKPIQSWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM 224 (337)
T ss_dssp EEEE-SSSEEEEETTTTEEEEEECSTTTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEE
T ss_pred EEEe-CCeEEEEECCCCcEeeeeeccccCCC---ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEE
Confidence 8877 7899999999999887776332 122 37899988766544332 46899
Q ss_pred EcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccC
Q 009993 344 EIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG 421 (520)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (520)
|+.++.. . ...+..+...+.+++|+| ++++++ ++.|.+||+.++.... . ...+
T Consensus 225 d~~~~~~----~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~---------~---------~~~~ 279 (337)
T 1pby_B 225 DLETGEM----A-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIK---------R---------VPLP 279 (337)
T ss_dssp ETTTCCE----E-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEE---------E---------EECS
T ss_pred eCCCCCc----e-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcc---------e---------ecCC
Confidence 9988742 1 333455667888999976 577777 7999999998642211 0 0112
Q ss_pred cceeeEEEEecCCEEEEecCCCeEEEEeCCchHh
Q 009993 422 FECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFE 455 (520)
Q Consensus 422 ~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~ 455 (520)
+.....++++++++|++++.++.|++||+.+++.
T Consensus 280 ~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 280 HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcE
Confidence 2233456667777888889999999999987644
No 137
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=6.2e-19 Score=181.69 Aligned_cols=239 Identities=10% Similarity=0.037 Sum_probs=171.8
Q ss_pred cHHHhhhhhccc-cccEEEEEEccCCCEEEEEeC-CCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeC---
Q 009993 130 SWKELIDVLYGH-TEAVLTVFVLASAKLLFTSGY-DSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGT--- 202 (520)
Q Consensus 130 ~W~~~~~~l~~h-~~~V~~l~~~~~~~~l~sgs~-dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~--- 202 (520)
.|.++++.++.+ ..+|++++|+|||+.||+++. ||+++||++.+++.......+...+..+. |+ +.+++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g 86 (582)
T 3o4h_A 8 EFSRIVRDVERLIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKG 86 (582)
T ss_dssp CHHHHHHHHHHHHHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTT
T ss_pred cHHHHHHHHHHHhccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCC
Confidence 377777777654 678999999999999999887 99999999976665443333334565554 67 67777765
Q ss_pred CCcEEEEEccc--CcceeeeccCCccccceEEec-cCCCCeEEEEEcCC-EEEEEecCCeEEEEECCCCcEEEEeeeccC
Q 009993 203 DGFIHCWRAVE--VLPHLFDISGSEKQNTQFRLW-EHEGPITSLALDLT-RIYSGSWDMTVRVWDRALLKCLKVLRHSDW 278 (520)
Q Consensus 203 dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~ 278 (520)
+....+|.+.. ... .. .+. .+...+.+++++++ .+++.+.++.+.+||+.+++......+...
T Consensus 87 ~~~~~l~~~~~~~~g~------------~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~ 153 (582)
T 3o4h_A 87 AEQHALFKVNTSRPGE------------EQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGF 153 (582)
T ss_dssp SCCEEEEEEETTSTTC------------CE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSC
T ss_pred CcceEEEEEeccCCCc------------cc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCc
Confidence 45567776543 210 11 121 11222445566774 334444444555999999887766665554
Q ss_pred EEEEeeCCCEEEEEc-C----CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCC--eEEEEEcccCccc
Q 009993 279 VYGLAPHDTTVASTS-G----SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG--AIHMYEIINDCTE 351 (520)
Q Consensus 279 v~~~~~~~~~l~~~~-d----~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg--~i~iwd~~~~~~~ 351 (520)
-..++|+|+.++.++ + ..|++||+.+++.. .+. .|.+.+..++|+|||+.|+++..++ .|++||+.++
T Consensus 154 ~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~--- 228 (582)
T 3o4h_A 154 GFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFD-SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG--- 228 (582)
T ss_dssp EEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EEC-CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC---
T ss_pred eEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Eee-cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC---
Confidence 455669999999776 5 67999999988765 343 5888899999999999999888898 8999999887
Q ss_pred cceeeeeeecCCcCCEEEEE--------ecC--CEEEEEeCCCcEEEEeC
Q 009993 352 ANVLLVATWIPHTGPVNSLA--------FEF--PWLVSAAGDGKLSLIDV 391 (520)
Q Consensus 352 ~~~~~~~~~~~h~~~v~~l~--------~~~--~~l~s~s~dg~i~vwd~ 391 (520)
... .+.+|...+..+. |+| ..+++++.||.+++|++
T Consensus 229 ---~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 229 ---SVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp ---CEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred ---cEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 334 5667776666666 876 58899999999999999
No 138
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.83 E-value=1.7e-18 Score=190.32 Aligned_cols=241 Identities=10% Similarity=0.022 Sum_probs=186.9
Q ss_pred CcccHH-----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCC-------------CceEE
Q 009993 127 DDKSWK-----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPL-------------GCTIR 188 (520)
Q Consensus 127 ~~~~W~-----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~-------------~~~v~ 188 (520)
...+|. ...+.+.+|. .+...+|+|+|++|+++. ++.|.+|++.... +..+..+ ...-.
T Consensus 225 ~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~ 301 (1045)
T 1k32_A 225 FGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAE 301 (1045)
T ss_dssp SCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEE
T ss_pred ceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCccccccccccccccccee
Confidence 346675 2244555665 466779999999998885 8999999995443 3355542 24556
Q ss_pred EEe-cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCC-CeEEEEE-cCCEEEEEecCCeEE-EEEC
Q 009993 189 AVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEG-PITSLAL-DLTRIYSGSWDMTVR-VWDR 264 (520)
Q Consensus 189 ~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~-~~~~l~s~s~dg~v~-iwd~ 264 (520)
+++ |+|+.|++++ ++.|.+|++.++. ...+..|.. .+..++| +++.+++++.++.+. +||+
T Consensus 302 ~~S~pdG~~la~~~-~~~i~~~~~~~~~--------------~~~~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~ 366 (1045)
T 1k32_A 302 DFSPLDGDLIAFVS-RGQAFIQDVSGTY--------------VLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDY 366 (1045)
T ss_dssp EEEECGGGCEEEEE-TTEEEEECTTSSB--------------EEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEET
T ss_pred eecCCCCCEEEEEE-cCEEEEEcCCCCc--------------eEEccCCCcceEEeeeEcCCCeEEEEECCCceEEEEEC
Confidence 889 9999999888 7899999986652 233456666 7888888 566788888888898 9999
Q ss_pred CCCcEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCC---
Q 009993 265 ALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG--- 338 (520)
Q Consensus 265 ~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg--- 338 (520)
.+++......+...+..+. |+++.+++++ ++.|++||+.+++...... +|.+.+..++|+|||++|++++.++
T Consensus 367 ~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~-~~~~~v~~~~~SpDG~~la~~~~~~~~~ 445 (1045)
T 1k32_A 367 RTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-SREAMITDFTISDNSRFIAYGFPLKHGE 445 (1045)
T ss_dssp TTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCCEEECTTSCEEEEEEEECSST
T ss_pred CCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc-CCCCCccceEECCCCCeEEEEecCcccc
Confidence 8877654444656677665 8999999888 8999999999998777665 5888899999999999998887654
Q ss_pred -------eEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993 339 -------AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 339 -------~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 393 (520)
.|++||+.++ . ...+..|...+..++|+| ++|+.++.++...+|+...
T Consensus 446 ~~~~~~~~i~l~d~~~g------~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 446 TDGYVMQAIHVYDMEGR------K-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp TCSCCEEEEEEEETTTT------E-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred ccCCCCCeEEEEECCCC------c-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence 8999999887 4 556777888899999975 6899999988888898654
No 139
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.83 E-value=2.7e-18 Score=164.18 Aligned_cols=270 Identities=12% Similarity=0.140 Sum_probs=168.7
Q ss_pred EEEEEeCCCeEEEEECC-CC--cEEEEeC-CCCceEEEEecCCCEEEEEeCC-CcEEEEEcc--cCcceeeeccCCcccc
Q 009993 156 LLFTSGYDSIVRMWHLE-DG--FSIASSK-PLGCTIRAVAADKKLLVAGGTD-GFIHCWRAV--EVLPHLFDISGSEKQN 228 (520)
Q Consensus 156 ~l~sgs~dg~v~vwd~~-~~--~~~~~~~-~~~~~v~~~~~~~~~l~sg~~d-g~i~vwd~~--~~~~~~~~~~~~~~~~ 228 (520)
++++++.|+.|++|++. ++ +.+..+. .......+++|++++|++++.+ +.|.+|++. ++. ..
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~-----------~~ 75 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA-----------LT 75 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC-----------EE
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCc-----------ee
Confidence 34455789999999995 33 2333332 2233345677999999988887 999999986 332 11
Q ss_pred ceEEeccCCCCeEEEEE--cCCEEEEEec-CCeEEEEECC---CCcEEEEeeeccCEEE--EeeCCCEEEEEc--CCeEE
Q 009993 229 TQFRLWEHEGPITSLAL--DLTRIYSGSW-DMTVRVWDRA---LLKCLKVLRHSDWVYG--LAPHDTTVASTS--GSDVY 298 (520)
Q Consensus 229 ~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg~v~iwd~~---~~~~~~~~~~~~~v~~--~~~~~~~l~~~~--d~~i~ 298 (520)
....+..+. .+..++| +++++++++. ++.|.+||+. +.+....+.....+.+ +.++++.+++++ ++.|+
T Consensus 76 ~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~ 154 (343)
T 1ri6_A 76 FAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRIC 154 (343)
T ss_dssp EEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEE
T ss_pred eccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEE
Confidence 222333333 7788888 6677766654 8899999994 4444455544444554 448888777665 79999
Q ss_pred EEECCC-CeeeE----EeecccccceEEEEecCCCCEEEEE-eCCCeEEEEEcccCcccc-ceeeeeeecCC---cCCEE
Q 009993 299 IWDTNS-GCLLT----VVNGAHVGNTKSLARSHTGDFLFTG-GEDGAIHMYEIINDCTEA-NVLLVATWIPH---TGPVN 368 (520)
Q Consensus 299 iwd~~~-~~~~~----~~~~~~~~~i~~l~~s~~~~~l~tg-~~dg~i~iwd~~~~~~~~-~~~~~~~~~~h---~~~v~ 368 (520)
+||+.+ ++... .+.......+..++|+|++++++++ ..++.|.+|++....... .......+... ...+.
T Consensus 155 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
T 1ri6_A 155 LFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAA 234 (343)
T ss_dssp EEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEE
T ss_pred EEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCcc
Confidence 999987 64432 2222234578899999999977655 478999999996421100 01112212111 34677
Q ss_pred EEEecC--CEEE-EEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEec-CCCe
Q 009993 369 SLAFEF--PWLV-SAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGG-EEGI 444 (520)
Q Consensus 369 ~l~~~~--~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~-~Dg~ 444 (520)
.++|+| ++|+ ++..++.|.+||+..... ....+..+ ..+......++++++++|++++ .|+.
T Consensus 235 ~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~--------~~~~~~~~------~~~~~~~~~~~s~dg~~l~~~~~~~~~ 300 (343)
T 1ri6_A 235 DIHITPDGRHLYACDRTASLITVFSVSEDGS--------VLSKEGFQ------PTETQPRGFNVDHSGKYLIAAGQKSHH 300 (343)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTSC--------CEEEEEEE------ECSSSCCCEEECTTSSEEEEECTTTCE
T ss_pred ceEECCCCCEEEEEecCCCEEEEEEEcCCCC--------ceEEeeee------cCCCccceEEECCCCCEEEEecCCCCe
Confidence 899976 4666 555799999999973100 00000000 0111133456667777666666 6899
Q ss_pred EEEEeCC
Q 009993 445 VRIWNFS 451 (520)
Q Consensus 445 v~iwd~~ 451 (520)
|.+|++.
T Consensus 301 v~v~~~d 307 (343)
T 1ri6_A 301 ISVYEIV 307 (343)
T ss_dssp EEEEEEE
T ss_pred EEEEEEc
Confidence 9999664
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.82 E-value=3.4e-18 Score=180.40 Aligned_cols=283 Identities=11% Similarity=0.029 Sum_probs=183.8
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCc--eEEEEecCCCEEEEEeCCCcEEEEEccc-----Cc
Q 009993 143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC--TIRAVAADKKLLVAGGTDGFIHCWRAVE-----VL 215 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~l~sg~~dg~i~vwd~~~-----~~ 215 (520)
..|.+++|+|| +.++.+. |+.|++||+.+++...... +.. .-.+++|+|+.|+++ .|+.|++||+.+ +.
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLFD-TNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEEC-CTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEccC-CcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 56999999999 6555554 5999999999887654433 222 234678999999985 679999999987 54
Q ss_pred ceeeeccCCccc-cceEEeccCCCCeEEEEE--cCCEEEEEe---------------------------------cCCeE
Q 009993 216 PHLFDISGSEKQ-NTQFRLWEHEGPITSLAL--DLTRIYSGS---------------------------------WDMTV 259 (520)
Q Consensus 216 ~~~~~~~~~~~~-~~~~~~~~h~~~v~~l~~--~~~~l~s~s---------------------------------~dg~v 259 (520)
............ ........+...+.++.| |+++|++++ .+..|
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 221100000000 000000111223578888 788999887 44689
Q ss_pred EEEECCCCcEEEEee---eccCEEEEe--eCCCEEEEEc-CC-----eEEEEECCCCeeeEEee-ccccc---ceEEEEe
Q 009993 260 RVWDRALLKCLKVLR---HSDWVYGLA--PHDTTVASTS-GS-----DVYIWDTNSGCLLTVVN-GAHVG---NTKSLAR 324 (520)
Q Consensus 260 ~iwd~~~~~~~~~~~---~~~~v~~~~--~~~~~l~~~~-d~-----~i~iwd~~~~~~~~~~~-~~~~~---~i~~l~~ 324 (520)
++||+.+++...... +...+.++. |+++.+++++ ++ .|++||+.+++....+. ..+.. .+..++|
T Consensus 238 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~ 317 (706)
T 2z3z_A 238 GIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTF 317 (706)
T ss_dssp EEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEE
T ss_pred EEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCcee
Confidence 999999988665542 445666665 8999888876 64 89999999984333332 11222 2467899
Q ss_pred cC--CCCEEEEEeCCCeEEEEEcc-cCccccceeeeeeecCCcCCEEE-EEecC--CEEEEE-eCCC----cEEEEeCCc
Q 009993 325 SH--TGDFLFTGGEDGAIHMYEII-NDCTEANVLLVATWIPHTGPVNS-LAFEF--PWLVSA-AGDG----KLSLIDVRK 393 (520)
Q Consensus 325 s~--~~~~l~tg~~dg~i~iwd~~-~~~~~~~~~~~~~~~~h~~~v~~-l~~~~--~~l~s~-s~dg----~i~vwd~~~ 393 (520)
+| +|+++++++.||.+++|++. ++ ..+..+..|...+.. ++|+| +.|+.+ +.++ .|..||+.+
T Consensus 318 sp~~dg~~l~~~~~~g~~~l~~~~~~~------~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 391 (706)
T 2z3z_A 318 LPGSNNQFIWQSRRDGWNHLYLYDTTG------RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG 391 (706)
T ss_dssp CTTCSSEEEEEECTTSSCEEEEEETTS------CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC
T ss_pred ecCCCCEEEEEEccCCccEEEEEECCC------CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC
Confidence 99 99999999999999999987 33 445666778778877 78976 455544 4444 566666655
Q ss_pred ccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCC----CeEEEEeCCchH
Q 009993 394 LLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEE----GIVRIWNFSQAF 454 (520)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~D----g~v~iwd~~~~~ 454 (520)
+. .....+.......++++++++++.+..+ +.|++||+.++.
T Consensus 392 ~~-------------------~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 392 GK-------------------TKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CC-------------------CEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CC-------------------ceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 31 0111111222334566667766655433 569999998764
No 141
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.81 E-value=3.2e-18 Score=159.77 Aligned_cols=230 Identities=11% Similarity=0.036 Sum_probs=167.5
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCC-CcEEEEeCCCC-ceE--EEEecCCCEEEEEe--CCCcEEE
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED-GFSIASSKPLG-CTI--RAVAADKKLLVAGG--TDGFIHC 208 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~-~~~~~~~~~~~-~~v--~~~~~~~~~l~sg~--~dg~i~v 208 (520)
...+..|.+.|.+++|+|+|++|++++ ++.|.+||+.+ ++.......+. ..+ .+++|++++|++++ .++...+
T Consensus 34 ~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l 112 (297)
T 2ojh_A 34 MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAI 112 (297)
T ss_dssp EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEE
T ss_pred eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceE
Confidence 345677999999999999999999987 78999999999 87776665553 333 56779999999998 4456666
Q ss_pred EEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEE-EEecCCeEEEEEC--CCCcEEEEeeeccCEEEEe
Q 009993 209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIY-SGSWDMTVRVWDR--ALLKCLKVLRHSDWVYGLA 283 (520)
Q Consensus 209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~-s~s~dg~v~iwd~--~~~~~~~~~~~~~~v~~~~ 283 (520)
|.+.... .....+.. ...+..++| ++++++ +++.|+.+++|++ .+++......+...+.++.
T Consensus 113 ~~~~~~~------------~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 179 (297)
T 2ojh_A 113 YLLPSTG------------GTPRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPD 179 (297)
T ss_dssp EEEETTC------------CCCEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEE
T ss_pred EEEECCC------------CceEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccce
Confidence 6653221 01222323 334888888 667766 7889999999985 4455444444677777776
Q ss_pred --eCCCEEEEEc--CCeEEEEECC-CCeeeEEeecccccceEEEEecCCCCEEEEEeCC-----------CeEEEEEccc
Q 009993 284 --PHDTTVASTS--GSDVYIWDTN-SGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED-----------GAIHMYEIIN 347 (520)
Q Consensus 284 --~~~~~l~~~~--d~~i~iwd~~-~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d-----------g~i~iwd~~~ 347 (520)
++++.++.++ ++.+.+|++. .+..+..+. .|...+..++|+|++++|++++.+ +.|++||+.+
T Consensus 180 ~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 180 YSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT-DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC-CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred ECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe-cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCC
Confidence 7888777654 7888999876 445555554 477889999999999999888766 5699999987
Q ss_pred CccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCC
Q 009993 348 DCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGD 383 (520)
Q Consensus 348 ~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~d 383 (520)
+.. ..+..+.+|...+.+++|+| ++|++++.|
T Consensus 259 ~~~----~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 259 GNV----ETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp CSC----EEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred CCc----eeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 732 33445557888899999976 577777655
No 142
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.81 E-value=7.5e-18 Score=166.18 Aligned_cols=215 Identities=19% Similarity=0.222 Sum_probs=149.7
Q ss_pred CeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccc----cceEEeccCCCC
Q 009993 164 SIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQ----NTQFRLWEHEGP 239 (520)
Q Consensus 164 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~~h~~~ 239 (520)
+.+++|+.... +........++++++.++++++.|+ +++|+....... ........ ........+...
T Consensus 23 ~~vri~~~~~~-----~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPEE-----LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ--NKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCSS-----CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC--CCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCccc-----cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh--cccccCcccccccCccccccCCCc
Confidence 46788764311 2233456677888889999998887 888876432110 00000000 001112346778
Q ss_pred eEEEEE--cCCEEE----EEecCCeEEEEECCCC--------cE---EEEee-eccCEEEEe--eC-CCEEEEEc-CCeE
Q 009993 240 ITSLAL--DLTRIY----SGSWDMTVRVWDRALL--------KC---LKVLR-HSDWVYGLA--PH-DTTVASTS-GSDV 297 (520)
Q Consensus 240 v~~l~~--~~~~l~----s~s~dg~v~iwd~~~~--------~~---~~~~~-~~~~v~~~~--~~-~~~l~~~~-d~~i 297 (520)
|.+++| ++++|+ +|+.|++|++||+.++ +. +..+. |...|.++. |+ +.++++++ |++|
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v 174 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence 999999 678888 7889999999998765 22 23333 789999988 55 77899888 9999
Q ss_pred EEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec-------CCcCCEEEE
Q 009993 298 YIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI-------PHTGPVNSL 370 (520)
Q Consensus 298 ~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~h~~~v~~l 370 (520)
++||++++..+.... +|...|++++|+|+|++|++|+.||.|++||++ +. ....+. .|...|.++
T Consensus 175 ~iwD~~~~~~~~~~~-~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~------~~~~~~~~~~~~~~~~~~v~~v 246 (434)
T 2oit_A 175 AVLQVTETVKVCATL-PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ------EKKVIPCPPFYESDHPVRVLDV 246 (434)
T ss_dssp EEEEESSSEEEEEEE-CGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC------EEEEECCCTTCCTTSCEEEEEE
T ss_pred EEEEcCCCcceeecc-CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc------ccccccCCcccCCCCceeEEEE
Confidence 999999987765554 589999999999999999999999999999998 31 222222 234489999
Q ss_pred EecCC--EEE-EEeCCCc------EEEEeCCcc
Q 009993 371 AFEFP--WLV-SAAGDGK------LSLIDVRKL 394 (520)
Q Consensus 371 ~~~~~--~l~-s~s~dg~------i~vwd~~~~ 394 (520)
.|+++ +++ .++.||. +++|++++.
T Consensus 247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 99764 332 2444543 899999864
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.80 E-value=2.9e-17 Score=157.69 Aligned_cols=257 Identities=12% Similarity=0.062 Sum_probs=179.7
Q ss_pred EEEEecCCCEEEEEeC-------CCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEE-EEecC
Q 009993 187 IRAVAADKKLLVAGGT-------DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIY-SGSWD 256 (520)
Q Consensus 187 v~~~~~~~~~l~sg~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~-s~s~d 256 (520)
-.+++++++.+++++. ++.|.+||..++. ....+. ....+..+++ ++++++ +...+
T Consensus 45 ~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~-------------~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~ 110 (353)
T 3vgz_A 45 EMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE-------------VTQAIH-NDLKPFGATINNTTQTLWFGNTVN 110 (353)
T ss_dssp EEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC-------------EEEEEE-ESSCCCSEEEETTTTEEEEEETTT
T ss_pred ceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe-------------EEEEEe-cCCCcceEEECCCCCEEEEEecCC
Confidence 4567799998888874 5689999987763 122222 2334566777 667554 55567
Q ss_pred CeEEEEECCCCcEEEEeeecc----------CEEEE--eeCCCEEEEEc---CCeEEEEECCCCeeeEEeecccccceEE
Q 009993 257 MTVRVWDRALLKCLKVLRHSD----------WVYGL--APHDTTVASTS---GSDVYIWDTNSGCLLTVVNGAHVGNTKS 321 (520)
Q Consensus 257 g~v~iwd~~~~~~~~~~~~~~----------~v~~~--~~~~~~l~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~i~~ 321 (520)
+.|.+||..+++.+..+.... .+.++ +++++.++++. ++.|.+||+.+++.+..+. .+...+..
T Consensus 111 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~ 189 (353)
T 3vgz_A 111 SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ-NTGKMSTG 189 (353)
T ss_dssp TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC-CCCTTCCC
T ss_pred CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec-CCCCccce
Confidence 999999999999888876321 14444 48888777665 6889999999999888875 25556888
Q ss_pred EEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec----CCcCCEEEEEecC--CEEEEEe-CCCcEEEEeCCcc
Q 009993 322 LARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI----PHTGPVNSLAFEF--PWLVSAA-GDGKLSLIDVRKL 394 (520)
Q Consensus 322 l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~----~h~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~~~~ 394 (520)
++|+|+++++++++.++.|.+||+.++ .....+. ++...+.+++|+| +++++++ .++.|.+||+.++
T Consensus 190 ~~~s~dg~~l~~~~~~~~i~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 190 LALDSEGKRLYTTNADGELITIDTADN------KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG 263 (353)
T ss_dssp CEEETTTTEEEEECTTSEEEEEETTTT------EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCC------eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 999999999999999999999999888 3444433 2556788899975 5565555 4599999999874
Q ss_pred cccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC-EEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhh
Q 009993 395 LRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMR 473 (520)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 473 (520)
.... .+........+++++++ .+++...++.|.+||..+++.+... . ..
T Consensus 264 ~~~~-------------------~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~-------~----~~ 313 (353)
T 3vgz_A 264 NILA-------------------KVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF-------D----TP 313 (353)
T ss_dssp CEEE-------------------EEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-------E----CC
T ss_pred cEEE-------------------EEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE-------e----cC
Confidence 2211 11111123467778888 5555667999999999877543221 0 11
Q ss_pred hccceeeeccCCCcccccccc
Q 009993 474 RRKLQTEMSSKGGRTDQCSVA 494 (520)
Q Consensus 474 ~~~~~~~~s~~g~~~~~~s~~ 494 (520)
..+..++|+|||+.+..+...
T Consensus 314 ~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 314 THPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp SEEEEEEECTTSCEEEEEEEC
T ss_pred CCCCeEEEcCCCCEEEEEEcc
Confidence 246789999999987775543
No 144
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.80 E-value=1.2e-17 Score=155.92 Aligned_cols=248 Identities=12% Similarity=0.054 Sum_probs=169.5
Q ss_pred EEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCC-CcEEEEee-
Q 009993 199 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRAL-LKCLKVLR- 274 (520)
Q Consensus 199 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~- 274 (520)
.++.|+.|++||+.++. ...+..|...|.+++| +++++++++ ++.|++||+.+ ++......
T Consensus 17 ~~~~~~~i~~~d~~~~~--------------~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~ 81 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRK--------------MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG 81 (297)
T ss_dssp -CCCCEEEEEEETTTTE--------------EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT
T ss_pred CCCcceeEEEEeCCCCc--------------eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc
Confidence 34678999999987752 3345568899999999 778888876 78999999999 87766554
Q ss_pred e-ccCEEE--EeeCCCEEEEEc-C----CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEE-EEeCCCeEEEEEc
Q 009993 275 H-SDWVYG--LAPHDTTVASTS-G----SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLF-TGGEDGAIHMYEI 345 (520)
Q Consensus 275 ~-~~~v~~--~~~~~~~l~~~~-d----~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~-tg~~dg~i~iwd~ 345 (520)
+ ...+.+ ++++++.++++. + ..|..++..++. ...+. +...+..++|+|+++.|+ +++.|+.+++|++
T Consensus 82 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~ 158 (297)
T 2ojh_A 82 FATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMT--KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSM 158 (297)
T ss_dssp TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECC--SSSSEEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred cccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEee--cCCCccceEECCCCCEEEEEECCCCceEEEEE
Confidence 2 244544 458999998887 2 345566666655 33343 334588999999999877 7888999999997
Q ss_pred ccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEe-CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCc
Q 009993 346 INDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAA-GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGF 422 (520)
Q Consensus 346 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (520)
+... .....+..|...+.++.|+| ++|+.++ .++.+++|++... ......+..+
T Consensus 159 ~~~~-----~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~------------------~~~~~~~~~~ 215 (297)
T 2ojh_A 159 DIDS-----GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVD------------------GSSVERITDS 215 (297)
T ss_dssp ETTT-----CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT------------------SSCEEECCCC
T ss_pred ECCC-----CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCC------------------CCCcEEEecC
Confidence 5432 23455667888999999976 5666655 5999999998632 1111223334
Q ss_pred ceeeE--EEEecCCEEEEecCC-----------CeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCccc
Q 009993 423 ECNLL--SVDIGADRIVCGGEE-----------GIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTD 489 (520)
Q Consensus 423 ~~~v~--~~~~~~~~l~sg~~D-----------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~ 489 (520)
...+. ++++++++|++++.+ +.|++||+.++.... .............++|+|||++++
T Consensus 216 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------~~~~~~~~~~~~~~~~spdg~~l~ 287 (297)
T 2ojh_A 216 AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVET--------LFDLFGGQGTMNSPNWSPDGDEFA 287 (297)
T ss_dssp SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEE--------EEEEEESTTTSCSCCBCTTSSEEE
T ss_pred CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCcee--------eeccCCCCcccccceECCCCCEEE
Confidence 44444 445566688877765 569999998753210 001111223467789999999998
Q ss_pred cccccc
Q 009993 490 QCSVAA 495 (520)
Q Consensus 490 ~~s~~~ 495 (520)
.++-+.
T Consensus 288 ~~~~~~ 293 (297)
T 2ojh_A 288 YVRYFP 293 (297)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 887543
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.80 E-value=4e-18 Score=179.86 Aligned_cols=294 Identities=13% Similarity=0.068 Sum_probs=187.4
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEECCCCcEE-EEeCCC-------------------CceEEEEecCCCEEEEEeCCC
Q 009993 145 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI-ASSKPL-------------------GCTIRAVAADKKLLVAGGTDG 204 (520)
Q Consensus 145 V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~-~~~~~~-------------------~~~v~~~~~~~~~l~sg~~dg 204 (520)
+..+.|. |+.+++++.|+ | +||+.+++.+ ..+..+ .....+++|+ ..++.+ .++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECC
Confidence 3446677 66777788888 8 9999999873 333222 1233455688 665555 359
Q ss_pred cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCC-----CcEEEEee-ec
Q 009993 205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRAL-----LKCLKVLR-HS 276 (520)
Q Consensus 205 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~-----~~~~~~~~-~~ 276 (520)
.|++||+.++. ...+..+...+.+++| ++++|+++ .|+.|++||+.+ ++...... +.
T Consensus 102 ~i~~~d~~~~~--------------~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~ 166 (706)
T 2z3z_A 102 GLVGFDMLARK--------------VTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGT 166 (706)
T ss_dssp EEEEEETTTTE--------------EEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCB
T ss_pred EEEEEECCCCc--------------eEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCC
Confidence 99999997752 2334456667888888 77888885 689999999998 77665443 22
Q ss_pred c----------------CEEEEeeCCCEEEEEc----------------------------------CCeEEEEECCCCe
Q 009993 277 D----------------WVYGLAPHDTTVASTS----------------------------------GSDVYIWDTNSGC 306 (520)
Q Consensus 277 ~----------------~v~~~~~~~~~l~~~~----------------------------------d~~i~iwd~~~~~ 306 (520)
. .-..++|+++.|++++ +..|++||+.+++
T Consensus 167 ~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~ 246 (706)
T 2z3z_A 167 ETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK 246 (706)
T ss_dssp TTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE
T ss_pred CCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc
Confidence 2 2234559999998875 2569999999987
Q ss_pred eeEEeec-ccccceEEEEecCCCCEEEEEeCCC-----eEEEEEcccCccccceeeeeeecCCc---CCEEEEEecC---
Q 009993 307 LLTVVNG-AHVGNTKSLARSHTGDFLFTGGEDG-----AIHMYEIINDCTEANVLLVATWIPHT---GPVNSLAFEF--- 374 (520)
Q Consensus 307 ~~~~~~~-~~~~~i~~l~~s~~~~~l~tg~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~h~---~~v~~l~~~~--- 374 (520)
....... .|...+.+++|+|||++|++++.++ .|++||+.++... ..+.. ..+. ..+.++.|+|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~---~~~~~-~~~~~~~~~~~~~~~sp~~d 322 (706)
T 2z3z_A 247 TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFV---RTLFV-ETDKHYVEPLHPLTFLPGSN 322 (706)
T ss_dssp EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEE---EEEEE-EECSSCCCCCSCCEECTTCS
T ss_pred eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCcee---eEEEE-ccCCCeECccCCceeecCCC
Confidence 6544422 4667899999999999999887775 8999999887211 11111 1122 2346678865
Q ss_pred -CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceee---EEEEecCCEE-EEecCCC----eE
Q 009993 375 -PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNL---LSVDIGADRI-VCGGEEG----IV 445 (520)
Q Consensus 375 -~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~l-~sg~~Dg----~v 445 (520)
+++++++.||.++||++... ......+..+...+ .+++++++.| ++++.++ .|
T Consensus 323 g~~l~~~~~~g~~~l~~~~~~------------------~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l 384 (706)
T 2z3z_A 323 NQFIWQSRRDGWNHLYLYDTT------------------GRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHF 384 (706)
T ss_dssp SEEEEEECTTSSCEEEEEETT------------------SCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEE
T ss_pred CEEEEEEccCCccEEEEEECC------------------CCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEE
Confidence 48888889999999987621 11111222333333 4566677755 4555555 66
Q ss_pred EEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCccccccc
Q 009993 446 RIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSV 493 (520)
Q Consensus 446 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~ 493 (520)
..||+.++.. . ... .......++|+|||++++....
T Consensus 385 ~~~d~~~~~~-~-------~l~----~~~~~~~~~~spdg~~l~~~~~ 420 (706)
T 2z3z_A 385 YCIDIKGGKT-K-------DLT----PESGMHRTQLSPDGSAIIDIFQ 420 (706)
T ss_dssp EEEETTCCCC-E-------ESC----CSSSEEEEEECTTSSEEEEEEE
T ss_pred EEEEcCCCCc-e-------ecc----CCCceEEEEECCCCCEEEEEec
Confidence 7777765431 1 111 1123567899999999887643
No 146
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.79 E-value=3.8e-17 Score=155.58 Aligned_cols=276 Identities=9% Similarity=0.002 Sum_probs=175.6
Q ss_pred CCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec-CCeEEEEECCCCcE-
Q 009993 194 KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DMTVRVWDRALLKC- 269 (520)
Q Consensus 194 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg~v~iwd~~~~~~- 269 (520)
+..+++++.++.|.+||..++. ....+..+...+ .+++ +++++++++. ++.|.+||..+++.
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~-------------~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~ 75 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLE-------------ILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK 75 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCC-------------EEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE
T ss_pred CEEEEEecCCCeEEEEeCcccc-------------eeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee
Confidence 3457788889999999998764 222333445555 8888 6776666665 89999999999987
Q ss_pred EEEee-eccCEE--EEeeCCCEEEEEcCC----eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEE-EEeCCCe-E
Q 009993 270 LKVLR-HSDWVY--GLAPHDTTVASTSGS----DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLF-TGGEDGA-I 340 (520)
Q Consensus 270 ~~~~~-~~~~v~--~~~~~~~~l~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~-tg~~dg~-i 340 (520)
...+. +..+.. .+++++++++++.++ .|.+||+.+++.+..+. ......+++|+|+|++++ ++..++. |
T Consensus 76 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~i 153 (331)
T 3u4y_A 76 VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP--IPYDAVGIAISPNGNGLILIDRSSANTV 153 (331)
T ss_dssp EEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE--CCTTEEEEEECTTSSCEEEEEETTTTEE
T ss_pred EEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE--CCCCccceEECCCCCEEEEEecCCCceE
Confidence 66665 333333 455999999866543 89999999999888775 345578999999998555 4556688 9
Q ss_pred EEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEE-EEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcc
Q 009993 341 HMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWL-VSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQR 417 (520)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (520)
.+|++.......... ...+ .....+..++|+| +++ +++..++.|.+||+.++... ..+..
T Consensus 154 ~~~~~~~~g~~~~~~-~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~---------~~~~~------ 216 (331)
T 3u4y_A 154 RRFKIDADGVLFDTG-QEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI---------TLLNA------ 216 (331)
T ss_dssp EEEEECTTCCEEEEE-EEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC---------EEEEE------
T ss_pred EEEEECCCCcEeecC-Cccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc---------ceeee------
Confidence 999998653221111 1222 3445689999976 445 45556899999999864320 00000
Q ss_pred cccCcceeeEEEEecCCEE-EEecCCCeEEEEeCCchHh--HHHHhhhhcccccchhhhhccceeeeccCCCcccccccc
Q 009993 418 MLHGFECNLLSVDIGADRI-VCGGEEGIVRIWNFSQAFE--IERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVA 494 (520)
Q Consensus 418 ~~~~~~~~v~~~~~~~~~l-~sg~~Dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~ 494 (520)
...+....-.+++++++++ ++...++.|.+||..+++. +... ................++|+|||+++..++.
T Consensus 217 ~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~- 292 (331)
T 3u4y_A 217 VGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSF---GHGLLIDPRPLFGANQMALNKTETKLFISAN- 292 (331)
T ss_dssp EECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEE---ECCCCCCCGGGTTCCCEEECTTSSEEEEEET-
T ss_pred ccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccc---ccccccCCCCcccccceEECCCCCEEEEecC-
Confidence 0111223345677778755 4555688999999987654 1100 0111111111112245799999999876553
Q ss_pred cccCCCCCCcceeeeccc
Q 009993 495 AKKNPMNGNRRSVWHNKR 512 (520)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~ 512 (520)
++....+|....
T Consensus 293 ------~~~~v~v~d~~~ 304 (331)
T 3u4y_A 293 ------ISRELKVFTISG 304 (331)
T ss_dssp ------TTTEEEEEETTS
T ss_pred ------CCCcEEEEEecC
Confidence 223346666543
No 147
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.79 E-value=5.1e-17 Score=155.26 Aligned_cols=239 Identities=12% Similarity=0.146 Sum_probs=162.3
Q ss_pred cccccEEEEEEccCCCEEEEEeCC-CeEEEEECC--CCc--EEEEeCCC-CceEEEEecCCCEEEEEeC-CCcEEEEEcc
Q 009993 140 GHTEAVLTVFVLASAKLLFTSGYD-SIVRMWHLE--DGF--SIASSKPL-GCTIRAVAADKKLLVAGGT-DGFIHCWRAV 212 (520)
Q Consensus 140 ~h~~~V~~l~~~~~~~~l~sgs~d-g~v~vwd~~--~~~--~~~~~~~~-~~~v~~~~~~~~~l~sg~~-dg~i~vwd~~ 212 (520)
.|...+.+++|+|+|++|++++.+ +.|.+|++. ++. .+..+..+ .....+++++++++++++. ++.|.+||+.
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence 567788999999999999988886 999999997 554 33444332 3344567799998877665 8899999985
Q ss_pred cCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEe-cCCeEEEEECCC-CcEEEE----ee--eccCEEEE
Q 009993 213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDRAL-LKCLKV----LR--HSDWVYGL 282 (520)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s-~dg~v~iwd~~~-~~~~~~----~~--~~~~v~~~ 282 (520)
++.. ......+. ....+.+++| +++++++++ .++.|.+||+.+ ++.... +. ....+..+
T Consensus 115 ~~~~----------~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (343)
T 1ri6_A 115 DGLP----------VGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHM 183 (343)
T ss_dssp TTEE----------EEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEE
T ss_pred CCcc----------cccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceE
Confidence 3210 11222232 3345788888 667788777 899999999987 654332 22 23355555
Q ss_pred e--eCCCEEEEEc--CCeEEEEECCC--Cee--eEEee---ccc--ccceEEEEecCCCCEEEE-EeCCCeEEEEEcccC
Q 009993 283 A--PHDTTVASTS--GSDVYIWDTNS--GCL--LTVVN---GAH--VGNTKSLARSHTGDFLFT-GGEDGAIHMYEIIND 348 (520)
Q Consensus 283 ~--~~~~~l~~~~--d~~i~iwd~~~--~~~--~~~~~---~~~--~~~i~~l~~s~~~~~l~t-g~~dg~i~iwd~~~~ 348 (520)
. ++++++++++ ++.|.+||+.. ++. ...+. .++ ...+..++|+|++++|++ +..++.|.+||+...
T Consensus 184 ~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~ 263 (343)
T 1ri6_A 184 VFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSED 263 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCC
Confidence 4 8888665544 79999999954 432 22222 111 235678999999998774 557999999999832
Q ss_pred ccccceeeeeeecCCcCCEEEEEecC--CEEEEEe-CCCcEEEEeCC
Q 009993 349 CTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAA-GDGKLSLIDVR 392 (520)
Q Consensus 349 ~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~~ 392 (520)
.. ....+..+..+.. +.+++|+| ++|++++ .++.|.+|++.
T Consensus 264 ~~--~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 264 GS--VLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp SC--CEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CC--ceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 10 1134444444444 88899976 5777777 68999999665
No 148
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.79 E-value=1.3e-17 Score=176.55 Aligned_cols=275 Identities=10% Similarity=-0.023 Sum_probs=176.6
Q ss_pred hhhhcCCCCCCCCCCCCCCCcccHH----Hhhhhhccccc---cEEEEEEccCCCEEEEEeCC---------CeEEEEEC
Q 009993 108 YCERWGLPIASAPLGAGFSDDKSWK----ELIDVLYGHTE---AVLTVFVLASAKLLFTSGYD---------SIVRMWHL 171 (520)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~W~----~~~~~l~~h~~---~V~~l~~~~~~~~l~sgs~d---------g~v~vwd~ 171 (520)
....|. |+..+...+.+...+.|+ +....+.+|.. .|.+++|+|||++|++++.+ +.+.+||+
T Consensus 20 ~~~~~s-pdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~ 98 (723)
T 1xfd_A 20 PEAKWI-SDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKI 98 (723)
T ss_dssp CCCCBS-SSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred cccEEc-CCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEEC
Confidence 345565 555544444445567787 33445566665 49999999999999999874 78889999
Q ss_pred CCCcEEEEeC---CCCc--eEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCC---------
Q 009993 172 EDGFSIASSK---PLGC--TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE--------- 237 (520)
Q Consensus 172 ~~~~~~~~~~---~~~~--~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~--------- 237 (520)
.+++. ..+. .|.. .-.+++|+|+.|+.++. +.|++||+.++............ . .+.++.
T Consensus 99 ~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~--~--~~~g~~~~v~~ee~~ 172 (723)
T 1xfd_A 99 PHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEG--V--IYNGLSDWLYEEEIL 172 (723)
T ss_dssp SSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTT--T--EEEEECCHHHHHTTS
T ss_pred CCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCC--c--eECcccceeEEEEec
Confidence 98875 2332 3332 23467799999999886 79999999876432111000000 0 000111
Q ss_pred CCeEEEEE--cCCEEEEEecCC----------------------------------eEEEEECCCCcEEEEee-e-----
Q 009993 238 GPITSLAL--DLTRIYSGSWDM----------------------------------TVRVWDRALLKCLKVLR-H----- 275 (520)
Q Consensus 238 ~~v~~l~~--~~~~l~s~s~dg----------------------------------~v~iwd~~~~~~~~~~~-~----- 275 (520)
+.+.+++| |++.|++++.|+ .|++||+.+++....+. +
T Consensus 173 ~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~ 252 (723)
T 1xfd_A 173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRM 252 (723)
T ss_dssp SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGG
T ss_pred cCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCC
Confidence 13378889 788898887653 89999999888655554 2
Q ss_pred -ccCEEEEe--eCCCEEEEEc-C----CeEEEEECCCCeeeEEeecccccceE----EEEecCCCCEEEE--EeCCC---
Q 009993 276 -SDWVYGLA--PHDTTVASTS-G----SDVYIWDTNSGCLLTVVNGAHVGNTK----SLARSHTGDFLFT--GGEDG--- 338 (520)
Q Consensus 276 -~~~v~~~~--~~~~~l~~~~-d----~~i~iwd~~~~~~~~~~~~~~~~~i~----~l~~s~~~~~l~t--g~~dg--- 338 (520)
...+..+. |+++++++.. . ..|++||+.+++....+...+...+. .++|+|+|+.|+. +..++
T Consensus 253 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 332 (723)
T 1xfd_A 253 REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRG 332 (723)
T ss_dssp SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSS
T ss_pred ccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCc
Confidence 44566555 8999887664 2 46999999999877665433344433 7899999997664 55677
Q ss_pred ---eEEEEEc-ccCccccceeeeeeecCCcCCEEE-EEecC--CEEEEEeCC---CcEEEEeCCc
Q 009993 339 ---AIHMYEI-INDCTEANVLLVATWIPHTGPVNS-LAFEF--PWLVSAAGD---GKLSLIDVRK 393 (520)
Q Consensus 339 ---~i~iwd~-~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~--~~l~s~s~d---g~i~vwd~~~ 393 (520)
.|.+||+ .++.. .+...+..+...+.. ++|+| +.|+..+.+ +.+++|++..
T Consensus 333 ~~~~l~~~d~~~~~~~----~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 333 KFYHITVSSSQPNSSN----DNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp CEEEEEEECSSCCSSS----CCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred ceeEEEEEeccCCCCc----cceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 4566663 33310 013334333444554 68865 577655554 7899999874
No 149
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.78 E-value=2.4e-17 Score=157.98 Aligned_cols=259 Identities=14% Similarity=0.076 Sum_probs=169.9
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCC---ceEEEEecCCCEEE-EEeCCCcEEEEEcccCcceeeecc
Q 009993 147 TVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG---CTIRAVAADKKLLV-AGGTDGFIHCWRAVEVLPHLFDIS 222 (520)
Q Consensus 147 ~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~l~-sg~~dg~i~vwd~~~~~~~~~~~~ 222 (520)
.+++++++.++++++.+++|.+||+.+++.+..+..+. ..-.+++++++.++ ++..++.|.+||+.++..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~------ 77 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN------ 77 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE------
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE------
Confidence 45678889999999999999999999998887776443 44567789998665 555789999999977632
Q ss_pred CCccccceEEec-cC-----CCCeEEEEE--cCCEEEEEecC------------CeEEEEECCCCcE---EEEeeeccCE
Q 009993 223 GSEKQNTQFRLW-EH-----EGPITSLAL--DLTRIYSGSWD------------MTVRVWDRALLKC---LKVLRHSDWV 279 (520)
Q Consensus 223 ~~~~~~~~~~~~-~h-----~~~v~~l~~--~~~~l~s~s~d------------g~v~iwd~~~~~~---~~~~~~~~~v 279 (520)
...+. .+ ...+..++| +++++++++.+ +.|.+||+.+++. +..+.+...+
T Consensus 78 -------~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 150 (349)
T 1jmx_B 78 -------TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQV 150 (349)
T ss_dssp -------EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSC
T ss_pred -------EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcc
Confidence 11221 11 223667788 77889888865 8999999988543 3444444455
Q ss_pred EEE--eeCCCEEEEEcCCeEEEEECCCCeeeEEeeccccc-----------------------ceEEEEecCCCCE----
Q 009993 280 YGL--APHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVG-----------------------NTKSLARSHTGDF---- 330 (520)
Q Consensus 280 ~~~--~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----------------------~i~~l~~s~~~~~---- 330 (520)
.++ .++++ ++++ ++.|.+||+.+++.+..+..+... ....+++++++..
T Consensus 151 ~~~~~s~dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 228 (349)
T 1jmx_B 151 YLMRAADDGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT 228 (349)
T ss_dssp CCEEECTTSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC
T ss_pred cceeECCCCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc
Confidence 554 48888 5554 344999999999887776532200 3445666655421
Q ss_pred -------EEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcccccCCC
Q 009993 331 -------LFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRP 400 (520)
Q Consensus 331 -------l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~ 400 (520)
+.....++.+.+|++ ..+...+.+++++| ++++++ ++.|.+||+.++.....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~- 290 (349)
T 1jmx_B 229 ADLLYGYLSVDLKTGKTHTQEF---------------ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKA- 290 (349)
T ss_dssp CEEEEEEEEEETTTCCEEEEEE---------------EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEE-
T ss_pred cccceeEEEEeccCCcEEeccc---------------ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEE-
Confidence 112223344444433 22455678888876 467766 88999999987422110
Q ss_pred CCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHh
Q 009993 401 TSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFE 455 (520)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~ 455 (520)
...++.....++++++++|++++.++.|++||..+++.
T Consensus 291 -----------------~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 291 -----------------ANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp -----------------EECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred -----------------EcCCCCccceEECCCCCEEEEecCCCeEEEEeccccce
Confidence 01122333456677777788888899999999987643
No 150
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.78 E-value=3.2e-17 Score=173.91 Aligned_cols=277 Identities=12% Similarity=-0.017 Sum_probs=184.6
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEECCCCc--EEEEeCCCCceEE--EEecCCCEEEEEeCCCcEEEEEcccCcceee
Q 009993 144 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIR--AVAADKKLLVAGGTDGFIHCWRAVEVLPHLF 219 (520)
Q Consensus 144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~--~~~~~~~~~~~v~--~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 219 (520)
.|.+++|+|||++|++++. +.|.+||+.++. ....+..+...+. +++|+|++|++++. +.|.+||+.++.....
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQL 187 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEEC
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEe
Confidence 4889999999999999986 999999999883 3445555555444 56699999999874 6899999987642211
Q ss_pred eccCCccccceEEeccC--------CCCeEEEEE--cCCEEEEEecCC--------------------------------
Q 009993 220 DISGSEKQNTQFRLWEH--------EGPITSLAL--DLTRIYSGSWDM-------------------------------- 257 (520)
Q Consensus 220 ~~~~~~~~~~~~~~~~h--------~~~v~~l~~--~~~~l~s~s~dg-------------------------------- 257 (520)
...... . ...++ ...+.++.| |+++|++++.|+
T Consensus 188 ~~~~~~---~--~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 188 TADGST---T--IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp CCCCCS---S--EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred ccCCcc---c--eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 100000 0 00000 112467888 788899888776
Q ss_pred -eEEEEECCC-CcEEEEe---eeccCEEEEe-eCCCEEEEEc------CCeEEEEECCCCeeeEEeeccccc----ceEE
Q 009993 258 -TVRVWDRAL-LKCLKVL---RHSDWVYGLA-PHDTTVASTS------GSDVYIWDTNSGCLLTVVNGAHVG----NTKS 321 (520)
Q Consensus 258 -~v~iwd~~~-~~~~~~~---~~~~~v~~~~-~~~~~l~~~~------d~~i~iwd~~~~~~~~~~~~~~~~----~i~~ 321 (520)
.|.+||+.+ ++..... .+...+..+. ++++.|+.+. +..|++||+.+++....+.. +.. .+..
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~~~~~~~ 341 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE-TSPTWVPLHNS 341 (741)
T ss_dssp EEEEEECSSTTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE-ECSSCCCCCSC
T ss_pred eEEEEEECCCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEc-CCCCcCCcCCc
Confidence 889999988 7765543 2444454433 9999888654 35699999999987766653 332 4468
Q ss_pred EEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEE-EecC--CEE-EEEeCCC--cEEEEeCCccc
Q 009993 322 LARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL-AFEF--PWL-VSAAGDG--KLSLIDVRKLL 395 (520)
Q Consensus 322 l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l-~~~~--~~l-~s~s~dg--~i~vwd~~~~~ 395 (520)
++|+|+|+++++++.||.++||.+.... . ...+..|...|..+ .|+| +.| ++++.++ .++||++....
T Consensus 342 ~~~spdg~~~~~~~~~g~~~l~~~~~~~-----~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g 415 (741)
T 2ecf_A 342 LRFLDDGSILWSSERTGFQHLYRIDSKG-----K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQG 415 (741)
T ss_dssp CEECTTSCEEEEECTTSSCEEEEECSSS-----C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTC
T ss_pred eEECCCCeEEEEecCCCccEEEEEcCCC-----C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCC
Confidence 8999999999999999999999886431 3 55666778888887 4876 455 4555565 89999986421
Q ss_pred ccCCCCCCCceeeeeecCCCcccccC-cceeeEEEEecCCEEEEecCC----CeEEEEeCCc
Q 009993 396 RSGRPTSGKRVSRVIEVEPPQRMLHG-FECNLLSVDIGADRIVCGGEE----GIVRIWNFSQ 452 (520)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sg~~D----g~v~iwd~~~ 452 (520)
. ....+.. ......++++++++|+....+ +.+.+|+...
T Consensus 416 ~------------------~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 416 G------------------QPQRLSKAPGMHSASFARNASVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp C------------------CCEECCCSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred C------------------CeeecccCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence 0 0011111 112344566667766554333 4688888754
No 151
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.77 E-value=3.4e-17 Score=156.05 Aligned_cols=226 Identities=13% Similarity=0.019 Sum_probs=165.6
Q ss_pred cEEEEEEccCCCEE-EEEeCCCeEEEEECCCCcEEEEeCC-C------CceEEEEecCCCEEEEEe------------CC
Q 009993 144 AVLTVFVLASAKLL-FTSGYDSIVRMWHLEDGFSIASSKP-L------GCTIRAVAADKKLLVAGG------------TD 203 (520)
Q Consensus 144 ~V~~l~~~~~~~~l-~sgs~dg~v~vwd~~~~~~~~~~~~-~------~~~v~~~~~~~~~l~sg~------------~d 203 (520)
.+.+++|+|+|+++ ++++.++.|.+||+.+++.+..+.. + .....+++++++.++++. .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 47889999999765 4556689999999999988776652 2 233456789999998886 57
Q ss_pred CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeecc--CE
Q 009993 204 GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSD--WV 279 (520)
Q Consensus 204 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~--~v 279 (520)
+.|.+||+.++. ....+. ....+.+++| ++++++++ ++.|.+||+.+++....+.... ..
T Consensus 115 ~~i~v~d~~~~~-------------~~~~~~-~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~ 178 (337)
T 1pby_B 115 TRVALYDAETLS-------------RRKAFE-APRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAE 178 (337)
T ss_dssp CEEEEEETTTTE-------------EEEEEE-CCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTT
T ss_pred ceEEEEECCCCc-------------EEEEEe-CCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCC
Confidence 999999987653 122222 2345667778 67777777 6889999999998887776221 22
Q ss_pred EEEeeCCCEEEEEc--CC-----------------------eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEE
Q 009993 280 YGLAPHDTTVASTS--GS-----------------------DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTG 334 (520)
Q Consensus 280 ~~~~~~~~~l~~~~--d~-----------------------~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg 334 (520)
..+.+++..++... ++ .|.+||+.+++....-...+...+.+++|+|++++++++
T Consensus 179 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 258 (337)
T 1pby_B 179 TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA 258 (337)
T ss_dssp TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe
Confidence 24557777655444 22 478999999877522222455678899999999999988
Q ss_pred eCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993 335 GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~ 394 (520)
++.|.+||+.++ ..+..+..+ ..+.+++|+| ++|++++.++.|.+||+.++
T Consensus 259 --~~~v~~~d~~~~------~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 259 --YNVLESFDLEKN------ASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp --ESEEEEEETTTT------EEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred --CCeEEEEECCCC------cCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence 799999999887 444444433 4578899976 68888889999999999874
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.75 E-value=2.3e-15 Score=144.26 Aligned_cols=261 Identities=15% Similarity=0.121 Sum_probs=159.3
Q ss_pred CCeEEEEECC--CCcEEE--EeC-CCCceEEEEecCCCEEEEEeC---CCcEEEEEcccCcceeeeccCCccccceEEec
Q 009993 163 DSIVRMWHLE--DGFSIA--SSK-PLGCTIRAVAADKKLLVAGGT---DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW 234 (520)
Q Consensus 163 dg~v~vwd~~--~~~~~~--~~~-~~~~~v~~~~~~~~~l~sg~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 234 (520)
++.|.+|+++ +++... ... .....-.+++|+++ |++++. ++.|.+|++.++.. .....+.
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-----------~~~~~~~ 82 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-----------HKLNTVV 82 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-----------EEEEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-----------EEeeeee
Confidence 5567777664 454332 121 22333467789999 555554 68999999966531 1233334
Q ss_pred cCCCCeEEEEE--cCCEEEEEe-cCCeEEEEECCC-Cc--EEEEeeec----------cCEEEE--eeCCCEEEEEc-CC
Q 009993 235 EHEGPITSLAL--DLTRIYSGS-WDMTVRVWDRAL-LK--CLKVLRHS----------DWVYGL--APHDTTVASTS-GS 295 (520)
Q Consensus 235 ~h~~~v~~l~~--~~~~l~s~s-~dg~v~iwd~~~-~~--~~~~~~~~----------~~v~~~--~~~~~~l~~~~-d~ 295 (520)
.+...+..+++ ++++|++++ .+++|.+||+.. +. .+..+.+. ..+.++ +|+++++++.. ++
T Consensus 83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~ 162 (347)
T 3hfq_A 83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD 162 (347)
T ss_dssp EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence 56677888888 678888887 789999999963 32 23333221 125444 48899666555 78
Q ss_pred eEEEEECC-CCeee--EEeecccccceEEEEecCCCCEEEE-EeCCCeEEEEEcccCccccceeeeeeecCCc------C
Q 009993 296 DVYIWDTN-SGCLL--TVVNGAHVGNTKSLARSHTGDFLFT-GGEDGAIHMYEIINDCTEANVLLVATWIPHT------G 365 (520)
Q Consensus 296 ~i~iwd~~-~~~~~--~~~~~~~~~~i~~l~~s~~~~~l~t-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~------~ 365 (520)
.|.+||+. +++.. ..+.......+..++|+|+|+++++ +..++.|.+|++..... ....+..+.... .
T Consensus 163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~ 240 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG--AFTQLGIVKTIPADYTAHN 240 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT--EEEEEEEEESSCTTCCSCC
T ss_pred EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC--ceEEeeeeeecCCCCCCCC
Confidence 99999998 55432 2222223346788999999996665 56789999999885211 112222222222 3
Q ss_pred CEEEEEecC--CEE-EEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecC-
Q 009993 366 PVNSLAFEF--PWL-VSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGE- 441 (520)
Q Consensus 366 ~v~~l~~~~--~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~- 441 (520)
.+..++|+| ++| ++...++.|.+|++..... ...+..+. ..+....-.++++++++|++++.
T Consensus 241 ~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~---------~~~~~~~~-----~~~~~~~~~~~spdg~~l~v~~~~ 306 (347)
T 3hfq_A 241 GAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH---------LTLIQQIS-----TEGDFPRDFDLDPTEAFVVVVNQN 306 (347)
T ss_dssp EEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC---------EEEEEEEE-----CSSSCCCEEEECTTSSEEEEEETT
T ss_pred cceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc---------EEEeEEEe-----cCCCCcCeEEECCCCCEEEEEEcC
Confidence 588899976 556 5666789999999873210 00000000 01122334566677777766664
Q ss_pred CCeEEEEeCC
Q 009993 442 EGIVRIWNFS 451 (520)
Q Consensus 442 Dg~v~iwd~~ 451 (520)
++.|.+|++.
T Consensus 307 ~~~v~v~~~d 316 (347)
T 3hfq_A 307 TDNATLYARD 316 (347)
T ss_dssp TTEEEEEEEC
T ss_pred CCcEEEEEEe
Confidence 5899999654
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.75 E-value=6.4e-16 Score=148.14 Aligned_cols=238 Identities=11% Similarity=0.110 Sum_probs=160.1
Q ss_pred ccccccEEEEEEccCCCEEEEEeC---CCeEEEEECCCCc--EEEEeCCC--CceEEEEecCCCEEEEEe-CCCcEEEEE
Q 009993 139 YGHTEAVLTVFVLASAKLLFTSGY---DSIVRMWHLEDGF--SIASSKPL--GCTIRAVAADKKLLVAGG-TDGFIHCWR 210 (520)
Q Consensus 139 ~~h~~~V~~l~~~~~~~~l~sgs~---dg~v~vwd~~~~~--~~~~~~~~--~~~v~~~~~~~~~l~sg~-~dg~i~vwd 210 (520)
..+...+..++|+|+|+ |++++. ++.|.+|++.++. .+..+..+ ...-.++++++++|++++ .++.|.+|+
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK 114 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 34567778899999999 555544 6899999997775 33333222 334457789999888888 679999999
Q ss_pred ccc-CcceeeeccCCccccceEEec---------cCCCCeEEEEE--cCCEEEEEecCCeEEEEECC-CCcEEEEe--e-
Q 009993 211 AVE-VLPHLFDISGSEKQNTQFRLW---------EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRA-LLKCLKVL--R- 274 (520)
Q Consensus 211 ~~~-~~~~~~~~~~~~~~~~~~~~~---------~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~-~~~~~~~~--~- 274 (520)
+.. +... ....+. .+...+.+++| +++.+++...++.|.+||+. +++..... .
T Consensus 115 ~~~~g~~~-----------~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~ 183 (347)
T 3hfq_A 115 IAADGALT-----------LTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTM 183 (347)
T ss_dssp ECTTSCEE-----------EEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEEC
T ss_pred eCCCCCee-----------ecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEc
Confidence 853 2211 111111 12345888899 66766666678899999998 55443222 2
Q ss_pred -eccCEEE--EeeCCCEEEEEc--CCeEEEEECCC--Cee--eEEeecccc------cceEEEEecCCCCEE-EEEeCCC
Q 009993 275 -HSDWVYG--LAPHDTTVASTS--GSDVYIWDTNS--GCL--LTVVNGAHV------GNTKSLARSHTGDFL-FTGGEDG 338 (520)
Q Consensus 275 -~~~~v~~--~~~~~~~l~~~~--d~~i~iwd~~~--~~~--~~~~~~~~~------~~i~~l~~s~~~~~l-~tg~~dg 338 (520)
....... ++|++++++++. ++.|.+|++.. ++. +..+.. .. ..+..++|+|+|++| +++..++
T Consensus 184 ~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~ 262 (347)
T 3hfq_A 184 EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT-IPADYTAHNGAAAIRLSHDGHFLYVSNRGYN 262 (347)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES-SCTTCCSCCEEEEEEECTTSCEEEEEEETTT
T ss_pred CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee-cCCCCCCCCcceeEEECCCCCEEEEEeCCCC
Confidence 2223444 448999766654 78999999874 543 222221 11 358899999999977 4566789
Q ss_pred eEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeC-CCcEEEEeCC
Q 009993 339 AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG-DGKLSLIDVR 392 (520)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~-dg~i~vwd~~ 392 (520)
.|.+|++.... ....+..+..+...+..++|+| ++|++++. ++.|.+|++.
T Consensus 263 ~v~v~~~~~~g---~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 263 TLAVFAVTADG---HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEEEEEECGGG---CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEEEECCCC---cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 99999997431 2245556666667789999976 57777775 4899999554
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.75 E-value=6.8e-17 Score=159.33 Aligned_cols=196 Identities=15% Similarity=0.112 Sum_probs=138.9
Q ss_pred CCeEEEEE--cCCEEEEEecCCeEEEEECCCC-----------c-----EEEEeeeccCEEEEe--eCCCEEE----EEc
Q 009993 238 GPITSLAL--DLTRIYSGSWDMTVRVWDRALL-----------K-----CLKVLRHSDWVYGLA--PHDTTVA----STS 293 (520)
Q Consensus 238 ~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~-----------~-----~~~~~~~~~~v~~~~--~~~~~l~----~~~ 293 (520)
..+..+++ ++.++++++.|+ +++|+.... . ....+.+...|.+++ +++++|+ +++
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 34566666 678899998887 888875311 1 112233566788887 7899998 666
Q ss_pred -CCeEEEEECCCC--------eee--EEeecccccceEEEEecCC-CCEEEEEeCCCeEEEEEcccCccccceeeeeeec
Q 009993 294 -GSDVYIWDTNSG--------CLL--TVVNGAHVGNTKSLARSHT-GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI 361 (520)
Q Consensus 294 -d~~i~iwd~~~~--------~~~--~~~~~~~~~~i~~l~~s~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 361 (520)
|+.|++||++++ +.+ .....+|...|.+++|+|+ +.+|++++.||+|++||++++ ..+....
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~------~~~~~~~ 189 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET------VKVCATL 189 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS------EEEEEEE
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC------cceeecc
Confidence 899999998765 222 1222368999999999998 889999999999999999988 4455566
Q ss_pred CCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EE-
Q 009993 362 PHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RI- 436 (520)
Q Consensus 362 ~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l- 436 (520)
+|...|++++|+| .+|++|+.||.|++||++.. .. ..+.........|...+.++.|+++ ++
T Consensus 190 ~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~-~~------------~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~ 256 (434)
T 2oit_A 190 PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQ-EK------------KVIPCPPFYESDHPVRVLDVLWIGTYVFAI 256 (434)
T ss_dssp CGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCC-EE------------EEECCCTTCCTTSCEEEEEEEEEETTEEEE
T ss_pred CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCc-cc------------ccccCCcccCCCCceeEEEEEEecCceEEE
Confidence 7899999999976 69999999999999999721 10 0001111111235567888888766 33
Q ss_pred EEecCCCe------EEEEeCCch
Q 009993 437 VCGGEEGI------VRIWNFSQA 453 (520)
Q Consensus 437 ~sg~~Dg~------v~iwd~~~~ 453 (520)
+.++.||. +++|++...
T Consensus 257 ~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 257 VYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEETTCCSSSCCEEEEEECCCT
T ss_pred EEccCCCccCCCCceEEEEeccC
Confidence 23444543 899999864
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.75 E-value=3.4e-15 Score=143.88 Aligned_cols=275 Identities=10% Similarity=0.108 Sum_probs=171.2
Q ss_pred CCCEEEEEeC----CCeEEEEEC--CCCcEE--EEeCCCCceEEEEecCCCEEEEEeCC----CcEEEEEcccCcceeee
Q 009993 153 SAKLLFTSGY----DSIVRMWHL--EDGFSI--ASSKPLGCTIRAVAADKKLLVAGGTD----GFIHCWRAVEVLPHLFD 220 (520)
Q Consensus 153 ~~~~l~sgs~----dg~v~vwd~--~~~~~~--~~~~~~~~~v~~~~~~~~~l~sg~~d----g~i~vwd~~~~~~~~~~ 220 (520)
...+++.|++ ++.|.+|++ .+++.. .........-.+++|++++|++++.+ +.|.+|++.....
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g---- 87 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG---- 87 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT----
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC----
Confidence 3445666644 568999976 455432 22323333446788999999999886 7999999865210
Q ss_pred ccCCccccceEEeccCCCCeEEEEEcCCEEEEEe-cCCeEEEEECCCCcEEEEe----ee-----------ccCEE--EE
Q 009993 221 ISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS-WDMTVRVWDRALLKCLKVL----RH-----------SDWVY--GL 282 (520)
Q Consensus 221 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~----~~-----------~~~v~--~~ 282 (520)
..........+......++++++++++++ .+++|.+|++.....+..+ .+ ...+. .+
T Consensus 88 -----~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 162 (361)
T 3scy_A 88 -----TLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRI 162 (361)
T ss_dssp -----EEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEE
T ss_pred -----cEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEE
Confidence 01123333445567778888888877776 5789999999754332211 11 11223 44
Q ss_pred eeCCCEEEEEc--CCeEEEEECCCCee------e------EEeecccccceEEEEecCCCCEEEEEe-CCCeEEEEEccc
Q 009993 283 APHDTTVASTS--GSDVYIWDTNSGCL------L------TVVNGAHVGNTKSLARSHTGDFLFTGG-EDGAIHMYEIIN 347 (520)
Q Consensus 283 ~~~~~~l~~~~--d~~i~iwd~~~~~~------~------~~~~~~~~~~i~~l~~s~~~~~l~tg~-~dg~i~iwd~~~ 347 (520)
+|++++++++. ++.|.+|++..... + ......+...+..++|+|+|+++++++ .++.|.+|++.+
T Consensus 163 spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 242 (361)
T 3scy_A 163 TPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD 242 (361)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET
T ss_pred CCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC
Confidence 58998766655 78999998875431 1 122223556688999999999887777 689999999986
Q ss_pred CccccceeeeeeecCCcCCEEEEEecC--CEEEEEeC--CCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcc
Q 009993 348 DCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG--DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE 423 (520)
Q Consensus 348 ~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (520)
+.. .....+.....+...+..++|+| ++|+++.. ++.|.+|++.... +. ...+..+ ..+..
T Consensus 243 g~~-~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~-------g~-~~~~~~~------~~g~~ 307 (361)
T 3scy_A 243 GML-DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETN-------GT-LTKVGYQ------LTGIH 307 (361)
T ss_dssp TEE-EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTT-------CC-EEEEEEE------ECSSC
T ss_pred Cce-EEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCC-------Cc-EEEeeEe------cCCCC
Confidence 521 11112222334445678999976 57766655 4899999986210 00 0000000 01222
Q ss_pred eeeEEEEecCCEEEEec-CCCeEEEEeCC
Q 009993 424 CNLLSVDIGADRIVCGG-EEGIVRIWNFS 451 (520)
Q Consensus 424 ~~v~~~~~~~~~l~sg~-~Dg~v~iwd~~ 451 (520)
...+++++++++|++++ .++.|.+|++.
T Consensus 308 ~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 308 PRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp CCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 33456777788777666 77999997665
No 156
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.74 E-value=2.3e-16 Score=166.91 Aligned_cols=234 Identities=9% Similarity=0.064 Sum_probs=162.0
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCc-----eE--EEEecCCCEEEEEeCC---------CcE
Q 009993 143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC-----TI--RAVAADKKLLVAGGTD---------GFI 206 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~-----~v--~~~~~~~~~l~sg~~d---------g~i 206 (520)
....+++|+|||++++++ |++|++||+.+++....+.+|.. .. ..++|||++|+.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 345688999999999886 99999999999998777776643 22 5778999999998876 566
Q ss_pred EEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee--eccCE---
Q 009993 207 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWV--- 279 (520)
Q Consensus 207 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v--- 279 (520)
.+||+.++. ...+..|.+.+...+| ||+.|+.++ |+.|++||..+++..+... +...+
T Consensus 95 ~~~d~~~~~--------------~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g 159 (740)
T 4a5s_A 95 DIYDLNKRQ--------------LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNG 159 (740)
T ss_dssp EEEETTTTE--------------ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEES
T ss_pred EEEECCCCc--------------EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecC
Confidence 799998763 2234567778999999 788888874 6899999998887554322 22222
Q ss_pred ----------------EEEeeCCCEEEEEc-C-C-----------------------------------eEEEEECCC--
Q 009993 280 ----------------YGLAPHDTTVASTS-G-S-----------------------------------DVYIWDTNS-- 304 (520)
Q Consensus 280 ----------------~~~~~~~~~l~~~~-d-~-----------------------------------~i~iwd~~~-- 304 (520)
..++|||+.|+.++ | + .|++||+.+
T Consensus 160 ~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~ 239 (740)
T 4a5s_A 160 ITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLS 239 (740)
T ss_dssp BCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCC
T ss_pred cccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCC
Confidence 34679999888764 2 2 588899988
Q ss_pred -Ce--eeEEeec-----ccccceEEEEecCCCCEEEEEeC----CCeEEEEEcccCccccceeeeeee--cCCcCCEE--
Q 009993 305 -GC--LLTVVNG-----AHVGNTKSLARSHTGDFLFTGGE----DGAIHMYEIINDCTEANVLLVATW--IPHTGPVN-- 368 (520)
Q Consensus 305 -~~--~~~~~~~-----~~~~~i~~l~~s~~~~~l~tg~~----dg~i~iwd~~~~~~~~~~~~~~~~--~~h~~~v~-- 368 (520)
++ ....+.. +|...+..++|+|||+.++.... +..|.+||+.++........+..+ .+|...|.
T Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~ 319 (740)
T 4a5s_A 240 SVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRF 319 (740)
T ss_dssp SSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSS
T ss_pred CCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccC
Confidence 73 2223322 26778999999999997665432 347999999887410000111222 34555444
Q ss_pred ---EEEecC--CEEE-EEe-CCC--cEEEEeCCc
Q 009993 369 ---SLAFEF--PWLV-SAA-GDG--KLSLIDVRK 393 (520)
Q Consensus 369 ---~l~~~~--~~l~-s~s-~dg--~i~vwd~~~ 393 (520)
...|+| +.|+ ..+ .+| .|++||+.+
T Consensus 320 ~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~ 353 (740)
T 4a5s_A 320 RPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK 353 (740)
T ss_dssp SCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC
T ss_pred cCCCceEcCCCCEEEEEEEcCCCceEEEEEECCC
Confidence 677876 4555 555 344 577888765
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.73 E-value=8.3e-15 Score=141.19 Aligned_cols=242 Identities=10% Similarity=0.132 Sum_probs=158.5
Q ss_pred ccccEEEEEEccCCCEEEEEeCC----CeEEEEECCC--Cc--EEEEeCCCCceEEEEecCCCEEEEEe-CCCcEEEEEc
Q 009993 141 HTEAVLTVFVLASAKLLFTSGYD----SIVRMWHLED--GF--SIASSKPLGCTIRAVAADKKLLVAGG-TDGFIHCWRA 211 (520)
Q Consensus 141 h~~~V~~l~~~~~~~~l~sgs~d----g~v~vwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~l~sg~-~dg~i~vwd~ 211 (520)
|...+..++|+|+|++|++++.+ +.|.+|++.. ++ .+.....+......++.++++|++++ .++.|.+|++
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~ 127 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPI 127 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEB
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEe
Confidence 67778889999999999999886 7999998865 43 33344444444555555888777776 5789999998
Q ss_pred ccCcceeeeccCCccccceEEe--------ccCCCCeEEEEE--cCCEEEEEe-cCCeEEEEECCCCcE------E----
Q 009993 212 VEVLPHLFDISGSEKQNTQFRL--------WEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDRALLKC------L---- 270 (520)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~--------~~h~~~v~~l~~--~~~~l~s~s-~dg~v~iwd~~~~~~------~---- 270 (520)
.+..... ........ ..+...+.+++| +++++++++ .++.|.+|++..... +
T Consensus 128 ~~~g~~~-------~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~ 200 (361)
T 3scy_A 128 GQDGALL-------PASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG 200 (361)
T ss_dssp CTTSCBC-------SCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE
T ss_pred CCCCcCc-------ccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc
Confidence 6532100 00000011 112344678888 677665555 588999998875431 1
Q ss_pred ----EEeeeccCEEEE--eeCCCEEEEEc--CCeEEEEECCCCee--eEEee--cccccceEEEEecCCCCEEEEEeCC-
Q 009993 271 ----KVLRHSDWVYGL--APHDTTVASTS--GSDVYIWDTNSGCL--LTVVN--GAHVGNTKSLARSHTGDFLFTGGED- 337 (520)
Q Consensus 271 ----~~~~~~~~v~~~--~~~~~~l~~~~--d~~i~iwd~~~~~~--~~~~~--~~~~~~i~~l~~s~~~~~l~tg~~d- 337 (520)
...........+ ++++++++++. ++.|.+||+.++.. +..+. ..+......++|+|+|++|+++..+
T Consensus 201 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~ 280 (361)
T 3scy_A 201 TPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK 280 (361)
T ss_dssp EEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS
T ss_pred cccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC
Confidence 112233444444 48998776665 79999999987754 22222 1233456899999999998776654
Q ss_pred -CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEe-CCCcEEEEeCC
Q 009993 338 -GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAA-GDGKLSLIDVR 392 (520)
Q Consensus 338 -g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~~ 392 (520)
+.|.+|++.... .....+..+.. ...+.+++|+| ++|++++ .++.|.+|++.
T Consensus 281 ~~~i~v~~~~~~~--g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 281 ADGVAIFKVDETN--GTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp SCEEEEEEECTTT--CCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEEEcCCC--CcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 899999996221 01123444443 45678999976 5787777 67899997654
No 158
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.71 E-value=2.4e-15 Score=146.46 Aligned_cols=289 Identities=11% Similarity=0.004 Sum_probs=176.3
Q ss_pred hhhhccccccEEE-----EEEccCCCEEEEEeC-CC--eEEEEECCCCcEEEEeCCCCceE--EEEecCCCEEEEEeCCC
Q 009993 135 IDVLYGHTEAVLT-----VFVLASAKLLFTSGY-DS--IVRMWHLEDGFSIASSKPLGCTI--RAVAADKKLLVAGGTDG 204 (520)
Q Consensus 135 ~~~l~~h~~~V~~-----l~~~~~~~~l~sgs~-dg--~v~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sg~~dg 204 (520)
+..+..|...... .+|+|||++|+.++. ++ .|.+||+.+++......++...+ ..++|+++.|+.++.++
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~ 102 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGR 102 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTT
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCC
Confidence 3445666666665 789999999998887 66 48888999988777666665443 36889999999999999
Q ss_pred cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE----cCCEEEEE----------------------ecCCe
Q 009993 205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSG----------------------SWDMT 258 (520)
Q Consensus 205 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~----------------------s~dg~ 258 (520)
.|.+||+.++... .....+...+....+ ++..++.. ..+..
T Consensus 103 ~l~~~d~~~g~~~-------------~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (388)
T 3pe7_A 103 NLMRVDLATLEEN-------------VVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCR 169 (388)
T ss_dssp EEEEEETTTCCEE-------------EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEE
T ss_pred eEEEEECCCCcce-------------eeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcce
Confidence 9999999877421 122233333433332 55666532 24478
Q ss_pred EEEEECCCCcEEEEeeeccCEEEEe--e-CCCEEEEEc-CC------eEEEEECCCCeeeEEeecccc-cceEEEEecCC
Q 009993 259 VRVWDRALLKCLKVLRHSDWVYGLA--P-HDTTVASTS-GS------DVYIWDTNSGCLLTVVNGAHV-GNTKSLARSHT 327 (520)
Q Consensus 259 v~iwd~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~-d~------~i~iwd~~~~~~~~~~~~~~~-~~i~~l~~s~~ 327 (520)
|.+||+.+++......+...+..+. | +++.++... ++ .|.++|...+... .+...+. ..+....|+|+
T Consensus 170 l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spd 248 (388)
T 3pe7_A 170 LMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPD 248 (388)
T ss_dssp EEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTT
T ss_pred EEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCC
Confidence 9999999998776666766676654 8 888887766 32 6888888765443 3332222 35778899999
Q ss_pred CCEEEEEeC-CC----eEEEEEcccCccccceeeeeeecCCcCC---EEEEEecC--CEEEEE---------eCCCcEEE
Q 009993 328 GDFLFTGGE-DG----AIHMYEIINDCTEANVLLVATWIPHTGP---VNSLAFEF--PWLVSA---------AGDGKLSL 388 (520)
Q Consensus 328 ~~~l~tg~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~h~~~---v~~l~~~~--~~l~s~---------s~dg~i~v 388 (520)
|+.|+..+. ++ .|++||+.++.. ..+..+.++... ...+.|+| +.|+.. ..+..|++
T Consensus 249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~----~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~ 324 (388)
T 3pe7_A 249 GSALVYVSYLKGSPDRFIYSADPETLEN----RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYV 324 (388)
T ss_dssp SSCEEEEEEETTCCCEEEEEECTTTCCE----EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEE
T ss_pred CCEEEEEecCCCCCcceEEEEecCCCce----EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEE
Confidence 997755433 22 399999988742 223333321100 01113543 455532 45678999
Q ss_pred EeCCcccccCCCCCCCceeeeeecCCCccc---ccCcceeeEEEEecCCEEEE-ecCCCeEEEEeCC
Q 009993 389 IDVRKLLRSGRPTSGKRVSRVIEVEPPQRM---LHGFECNLLSVDIGADRIVC-GGEEGIVRIWNFS 451 (520)
Q Consensus 389 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~l~s-g~~Dg~v~iwd~~ 451 (520)
||+.++... .+......... -..+.....+++++++.|+. +..+|...||.+.
T Consensus 325 ~d~~~~~~~----------~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 325 FNMKNGTQH----------RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp EETTTTEEE----------EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred EeccCCceE----------EeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 999874211 11100000000 00001223466777875554 4457777777654
No 159
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.69 E-value=4.1e-15 Score=155.62 Aligned_cols=279 Identities=9% Similarity=-0.048 Sum_probs=181.3
Q ss_pred hhhhccccccEEEEEEccCCCEEEEE--eCCCeEEEEECCCCcEEEEeCCCCceE-----------EEEe--cCCCE-EE
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTS--GYDSIVRMWHLEDGFSIASSKPLGCTI-----------RAVA--ADKKL-LV 198 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sg--s~dg~v~vwd~~~~~~~~~~~~~~~~v-----------~~~~--~~~~~-l~ 198 (520)
...+.+|...|..++|++++-+++++ +.++...||....+.....+..+...+ ..++ ||++. |+
T Consensus 16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 35678899999999999877666766 568899999965555555665554332 2344 89988 77
Q ss_pred EEeC-CCcEEEEEcc--c-CcceeeeccCCccccceEEecc-----CCCCeEEEEE--cCCEEEEEecC----------C
Q 009993 199 AGGT-DGFIHCWRAV--E-VLPHLFDISGSEKQNTQFRLWE-----HEGPITSLAL--DLTRIYSGSWD----------M 257 (520)
Q Consensus 199 sg~~-dg~i~vwd~~--~-~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~--~~~~l~s~s~d----------g 257 (520)
.++. +..|.++++. + + ....+.. |...+.+++| |++.|++++.| .
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~--------------~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~ 161 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGA--------------VPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRR 161 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCC--------------CCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEE
T ss_pred EEECCCCeEEEEcCCCCCCC--------------CCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCcee
Confidence 6654 4566666654 2 2 1223333 5667888888 78899988877 5
Q ss_pred eEEEEECCC------CcEEEEe-eeccCEE--EEeeCCCEEEEEc-CC--------eEEEEECC-CC--eeeEEeecccc
Q 009993 258 TVRVWDRAL------LKCLKVL-RHSDWVY--GLAPHDTTVASTS-GS--------DVYIWDTN-SG--CLLTVVNGAHV 316 (520)
Q Consensus 258 ~v~iwd~~~------~~~~~~~-~~~~~v~--~~~~~~~~l~~~~-d~--------~i~iwd~~-~~--~~~~~~~~~~~ 316 (520)
.|++||+.+ ++..... .+...+. .++|+|+.|+.++ ++ .|++||+. ++ .....+..+|.
T Consensus 162 ~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~ 241 (662)
T 3azo_A 162 FLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE 241 (662)
T ss_dssp EEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT
T ss_pred EEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC
Confidence 899999988 6655444 4344444 3559999998776 53 79999999 56 23344443457
Q ss_pred cceEEEEecCCCCEEEEEeCCC--eEEEEEcccCccccceeeeeeecCCcCC--------EEEEEecC--CEEEEEeCCC
Q 009993 317 GNTKSLARSHTGDFLFTGGEDG--AIHMYEIINDCTEANVLLVATWIPHTGP--------VNSLAFEF--PWLVSAAGDG 384 (520)
Q Consensus 317 ~~i~~l~~s~~~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~--------v~~l~~~~--~~l~s~s~dg 384 (520)
..+..+.|+|||+++++++.++ .|.+||+.++. .......+... +..++|++ .++++++. +
T Consensus 242 ~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~------~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~ 314 (662)
T 3azo_A 242 EAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA------ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G 314 (662)
T ss_dssp BCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC------EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S
T ss_pred ceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc------eeecccccccccCccccccCceEeEeCCCEEEEEEEc-C
Confidence 8899999999999888888888 55555554442 22222222221 45678854 68888888 9
Q ss_pred cEEEEeC--CcccccCCCCCCCceeeeeecCCCcccccCcceeeEEE-EecCC--EEEEecCCCe--EEEEeCCchH
Q 009993 385 KLSLIDV--RKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSV-DIGAD--RIVCGGEEGI--VRIWNFSQAF 454 (520)
Q Consensus 385 ~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~--~l~sg~~Dg~--v~iwd~~~~~ 454 (520)
.++||.+ .+.. ...+..+...+..+ +++++ ++++++.+.. |.+||+.++.
T Consensus 315 ~~~l~~~d~~~~~--------------------~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 315 AAVLGILDPESGE--------------------LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp SCEEEEEETTTTE--------------------EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred ccEEEEEECCCCc--------------------EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 9999954 3321 12223344455566 77777 4445555544 5555655543
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.69 E-value=6e-16 Score=159.31 Aligned_cols=258 Identities=10% Similarity=0.018 Sum_probs=168.9
Q ss_pred ceEEEEecCCCEEEEEeC-CCcEEEEEcccCcceeeeccCCccccceEEeccCC-CCeEEEEEcCC-EEEEEec---CCe
Q 009993 185 CTIRAVAADKKLLVAGGT-DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE-GPITSLALDLT-RIYSGSW---DMT 258 (520)
Q Consensus 185 ~~v~~~~~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~-~l~s~s~---dg~ 258 (520)
....++++||+.|++++. ||++.||++.++ ....+..|. ..+..+.|+++ .+++++. +..
T Consensus 24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g--------------~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~ 89 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG--------------ETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQ 89 (582)
T ss_dssp EEEEEEEETTTEEEEEEEETTEEEEEEEETT--------------EEEECCSSCCSEECEECTTCSEEEEEEECSTTSCC
T ss_pred hheeecCCCCCeEEEEEccCCceeEEEEcCC--------------CcEeeecccccccccccCCCCeEEEEeccCCCCcc
Confidence 334456699999999887 999999998554 223444555 57889999544 4555554 455
Q ss_pred EEEEECCC---CcEEEEee--eccCEEEEeeCCCE--EEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEE
Q 009993 259 VRVWDRAL---LKCLKVLR--HSDWVYGLAPHDTT--VASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFL 331 (520)
Q Consensus 259 v~iwd~~~---~~~~~~~~--~~~~v~~~~~~~~~--l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 331 (520)
.++|.+.. +... .+. ....+.+++++++. ++++.++.+.+||+.+++...... +.. .+++|+|||++|
T Consensus 90 ~~l~~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~--~~~--~~~~~spDG~~l 164 (582)
T 3o4h_A 90 HALFKVNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR--LPG--FGFVSDIRGDLI 164 (582)
T ss_dssp EEEEEEETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE--ESS--CEEEEEEETTEE
T ss_pred eEEEEEeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec--CCC--ceEEECCCCCEE
Confidence 56654432 2222 332 23335677788753 444446666799999987665543 222 789999999999
Q ss_pred EEEeCC----CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCC--cEEEEeCCcccccCCCCCC
Q 009993 332 FTGGED----GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDG--KLSLIDVRKLLRSGRPTSG 403 (520)
Q Consensus 332 ~tg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~ 403 (520)
++++.+ +.|++||+.++. ...+..|.+.+..++|+| +.|+++..++ .|++||+.++... .....
T Consensus 165 a~~~~~~~~~~~i~~~d~~~g~-------~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~ 236 (582)
T 3o4h_A 165 AGLGFFGGGRVSLFTSNLSSGG-------LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP 236 (582)
T ss_dssp EEEEEEETTEEEEEEEETTTCC-------CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS
T ss_pred EEEEEcCCCCeEEEEEcCCCCC-------ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC
Confidence 988777 789999998872 335678888899999976 6888888888 8999999874322 10000
Q ss_pred CceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeecc
Q 009993 404 KRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSS 483 (520)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 483 (520)
........+....-.++++++.++++++.||.+++|++ ++... . .......++|+
T Consensus 237 ---------~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~-------~------~~~~v~~~~~s- 291 (582)
T 3o4h_A 237 ---------SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE-------A------PQGNHGRVVLW- 291 (582)
T ss_dssp ---------CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC-------C------CSSEEEEEEEE-
T ss_pred ---------CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec-------c------CCCceEEEEec-
Confidence 00000001111122337778879999999999999999 33211 0 01234678899
Q ss_pred CCCcccccccc
Q 009993 484 KGGRTDQCSVA 494 (520)
Q Consensus 484 ~g~~~~~~s~~ 494 (520)
||+.+++.+.+
T Consensus 292 dg~~l~~~s~~ 302 (582)
T 3o4h_A 292 RGKLVTSHTSL 302 (582)
T ss_dssp TTEEEEEEEET
T ss_pred CCEEEEEEcCC
Confidence 88887765543
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.68 E-value=1.3e-15 Score=161.03 Aligned_cols=296 Identities=11% Similarity=0.018 Sum_probs=187.4
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCC-----ceEEEEecCCCEEEEEeC---------CCcEEEEEcc
Q 009993 147 TVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-----CTIRAVAADKKLLVAGGT---------DGFIHCWRAV 212 (520)
Q Consensus 147 ~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~l~sg~~---------dg~i~vwd~~ 212 (520)
.++|+|+|+++++ +.|++|++||+.+++....+..+. ....+++|||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 6789999965555 469999999999998877766553 345678899999998876 7899999998
Q ss_pred cCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee--eccC----------
Q 009993 213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDW---------- 278 (520)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~---------- 278 (520)
++.... ...+ ...+..++| ||+.|++++ |+.|++||+.+++...... +...
T Consensus 99 ~g~~~~-----------~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~ 163 (719)
T 1z68_A 99 NGEFVR-----------GNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVY 163 (719)
T ss_dssp TTEECC-----------SSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHH
T ss_pred CCcccc-----------ceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccccccee
Confidence 764200 0011 245777888 788888875 7899999999887755432 2221
Q ss_pred ---------EEEEeeCCCEEEEEc-CC----------------------------------eEEEEECCCCeee--EEee
Q 009993 279 ---------VYGLAPHDTTVASTS-GS----------------------------------DVYIWDTNSGCLL--TVVN 312 (520)
Q Consensus 279 ---------v~~~~~~~~~l~~~~-d~----------------------------------~i~iwd~~~~~~~--~~~~ 312 (520)
-..++|+|+.|+.++ |. .|++||+.+++.. ..+.
T Consensus 164 ~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 243 (719)
T 1z68_A 164 EEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVP 243 (719)
T ss_dssp HHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECC
T ss_pred eeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEcc
Confidence 245569999999877 42 7889999988753 1221
Q ss_pred -----cccccceEEEEecCCCCEEEEEeCC----CeEEEEE----cccCccccceeeeeee----cCCcCCEE-----EE
Q 009993 313 -----GAHVGNTKSLARSHTGDFLFTGGED----GAIHMYE----IINDCTEANVLLVATW----IPHTGPVN-----SL 370 (520)
Q Consensus 313 -----~~~~~~i~~l~~s~~~~~l~tg~~d----g~i~iwd----~~~~~~~~~~~~~~~~----~~h~~~v~-----~l 370 (520)
.+|...+..++|+||++++++.... ..|.+|| +.++ .....+ .+|...+. .+
T Consensus 244 ~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (719)
T 1z68_A 244 VPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW------DCPKTQEHIEESRTGWAGGFFVSTP 317 (719)
T ss_dssp CCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE------ECCGGGEEEEECSSSCSSSSSCCCC
T ss_pred CCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC------ceEEEEecccccCCceEccccCCcc
Confidence 1477789999999998877764432 2488888 6665 223233 35666666 78
Q ss_pred EecC--CEEE--EEeCCC--cEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeE--EEEecCCEEEEecC-
Q 009993 371 AFEF--PWLV--SAAGDG--KLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLL--SVDIGADRIVCGGE- 441 (520)
Q Consensus 371 ~~~~--~~l~--s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~- 441 (520)
.|+| +.|+ ++..+| .|.+||+.+.. ...+..+...+. ... +++.|+..+.
T Consensus 318 ~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--------------------~~~lt~~~~~v~~~~~~-d~~~i~~~~~~ 376 (719)
T 1z68_A 318 VFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--------------------AIQITSGKWEAINIFRV-TQDSLFYSSNE 376 (719)
T ss_dssp EECTTSSCEEEEEECTTSCEEEEEESSCSTT--------------------CEECSCSSSCEEEEEEE-CSSEEEEEESC
T ss_pred EECCCCCeEEEEEEccCCceEEEEEECCCCc--------------------eEecccCceEEEEEEEE-eCCEEEEEEec
Confidence 8876 4333 454566 46666765431 011111221222 122 5665544444
Q ss_pred ----CCeEEEEeCCc--hH-hHHHHhhhhcccccchhhhhccceeeeccCCCccccc
Q 009993 442 ----EGIVRIWNFSQ--AF-EIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQC 491 (520)
Q Consensus 442 ----Dg~v~iwd~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 491 (520)
++.+++|.+.. +. ....+.... .........+.|+|||+.++..
T Consensus 377 ~~~~~~~~~l~~~~~~~g~~~~~~l~~~~------~~~~~~~~~~~~s~dg~~l~~~ 427 (719)
T 1z68_A 377 FEEYPGRRNIYRISIGSYPPSKKCVTCHL------RKERCQYYTASFSDYAKYYALV 427 (719)
T ss_dssp GGGCTTCBEEEEEECSSSSCCEEESSTTT------TTTTBCBEEEEECGGGSSEEEE
T ss_pred CCCCCceEEEEEEeCCCCCCCceeccCcc------CCCCCceEEEEECCCCCEEEEE
Confidence 48899998764 21 000000000 0011234568899999988754
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.66 E-value=9.6e-16 Score=162.00 Aligned_cols=256 Identities=9% Similarity=-0.026 Sum_probs=164.7
Q ss_pred CCCcccHH----Hhhhhhccccc---cEEEEEEccCCCEEEEEeC---------CCeEEEEECCCCcEE--EEeCCCCce
Q 009993 125 FSDDKSWK----ELIDVLYGHTE---AVLTVFVLASAKLLFTSGY---------DSIVRMWHLEDGFSI--ASSKPLGCT 186 (520)
Q Consensus 125 ~~~~~~W~----~~~~~l~~h~~---~V~~l~~~~~~~~l~sgs~---------dg~v~vwd~~~~~~~--~~~~~~~~~ 186 (520)
......|+ +....+.+|.. .|.+++|+|||++|++++. |+.|++||+.+++.+ ..+. ....
T Consensus 35 d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~-~~~~ 113 (719)
T 1z68_A 35 DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP-RPIQ 113 (719)
T ss_dssp TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC-SSBC
T ss_pred CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC-cccc
Confidence 44456676 23334444544 4899999999999998876 789999999998763 2222 2334
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCC---------eEEEEE--cCCEEEEEec
Q 009993 187 IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGP---------ITSLAL--DLTRIYSGSW 255 (520)
Q Consensus 187 v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------v~~l~~--~~~~l~s~s~ 255 (520)
-.+++|||+.|+.+. ++.|++|++.++........+. ....+.+|... ..+++| ||++|++++.
T Consensus 114 ~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~----~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~ 188 (719)
T 1z68_A 114 YLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGR----ENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEF 188 (719)
T ss_dssp CEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCB----TTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEE
T ss_pred cceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCC----cCCeEcccccceeeeecccCcccEEECCCCCEEEEEEE
Confidence 467889999999886 7899999998775322111110 00011233222 247888 7889998886
Q ss_pred CC----------------------------------eEEEEECCCCcEE--EEe-------eeccCEEEEe--eCCCEEE
Q 009993 256 DM----------------------------------TVRVWDRALLKCL--KVL-------RHSDWVYGLA--PHDTTVA 290 (520)
Q Consensus 256 dg----------------------------------~v~iwd~~~~~~~--~~~-------~~~~~v~~~~--~~~~~l~ 290 (520)
|. .|++||+.+++.. ..+ .+...+..+. |++++++
T Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~ 268 (719)
T 1z68_A 189 NDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCL 268 (719)
T ss_dssp ECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEE
T ss_pred CCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEE
Confidence 53 7899999988753 111 1455666665 8877777
Q ss_pred EEc-C----CeEEEEE----CCCCeeeEEee---cccccceE-----EEEecCCCCEEE--EEeCCCe--EEEEEcccCc
Q 009993 291 STS-G----SDVYIWD----TNSGCLLTVVN---GAHVGNTK-----SLARSHTGDFLF--TGGEDGA--IHMYEIINDC 349 (520)
Q Consensus 291 ~~~-d----~~i~iwd----~~~~~~~~~~~---~~~~~~i~-----~l~~s~~~~~l~--tg~~dg~--i~iwd~~~~~ 349 (520)
+.. . ..|.+|| +.+++....+. .+|...+. .+.|+|+|+.++ ++..+|. |.+||+.++
T Consensus 269 ~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~- 347 (719)
T 1z68_A 269 QWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE- 347 (719)
T ss_dssp EEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST-
T ss_pred EEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC-
Confidence 644 2 2489999 88877654442 34666666 789999999554 3556664 566666555
Q ss_pred cccceeeeeeecCCcCCEEEEEe-cCCEEEEEeCC-----CcEEEEeCCc
Q 009993 350 TEANVLLVATWIPHTGPVNSLAF-EFPWLVSAAGD-----GKLSLIDVRK 393 (520)
Q Consensus 350 ~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~d-----g~i~vwd~~~ 393 (520)
. ...+..+...+..+.+ +++.|+..+.+ +.+++|.+..
T Consensus 348 -----~-~~~lt~~~~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 348 -----N-AIQITSGKWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp -----T-CEECSCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred -----c-eEecccCceEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeC
Confidence 2 3344455555665544 45566655554 8899998764
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.66 E-value=5.3e-14 Score=135.77 Aligned_cols=270 Identities=11% Similarity=0.083 Sum_probs=163.1
Q ss_pred EEEEEeCC--CeEEEEEC--CCCcEE--EEeC-CC--CceEEEEecCCCEEEEEeCCCcEEEEEcc-cCcceeeeccCCc
Q 009993 156 LLFTSGYD--SIVRMWHL--EDGFSI--ASSK-PL--GCTIRAVAADKKLLVAGGTDGFIHCWRAV-EVLPHLFDISGSE 225 (520)
Q Consensus 156 ~l~sgs~d--g~v~vwd~--~~~~~~--~~~~-~~--~~~v~~~~~~~~~l~sg~~dg~i~vwd~~-~~~~~~~~~~~~~ 225 (520)
+++.|++. +.|.+|++ .+++.. .... +. ...-.++++++++|++++.+ .|.+|++. ++...
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~-------- 74 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV-------- 74 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE--------
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE--------
Confidence 35666653 56887765 456432 2221 11 33456778999999999988 99999986 54211
Q ss_pred cccceEEeccCCCCeEEEEE--cCCE--EEEEe-------------cCCeEEEEECC-CCcEEEEee-----eccCEEEE
Q 009993 226 KQNTQFRLWEHEGPITSLAL--DLTR--IYSGS-------------WDMTVRVWDRA-LLKCLKVLR-----HSDWVYGL 282 (520)
Q Consensus 226 ~~~~~~~~~~h~~~v~~l~~--~~~~--l~s~s-------------~dg~v~iwd~~-~~~~~~~~~-----~~~~v~~~ 282 (520)
.......+ +.+.++++ ++++ +++++ .++++.+|++. +++....+. +...+.++
T Consensus 75 ---~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~ 150 (365)
T 1jof_A 75 ---HEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGM 150 (365)
T ss_dssp ---EEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEE
T ss_pred ---EeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEE
Confidence 11111111 12334566 5663 44553 68999999997 466554443 23456665
Q ss_pred e--eCCCEEEEEc--CCeEEEEECC-CCeee--EEeec-ccccceEEEEecCCCCEEEEEeC-CCeEEEEEccc--Cccc
Q 009993 283 A--PHDTTVASTS--GSDVYIWDTN-SGCLL--TVVNG-AHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIIN--DCTE 351 (520)
Q Consensus 283 ~--~~~~~l~~~~--d~~i~iwd~~-~~~~~--~~~~~-~~~~~i~~l~~s~~~~~l~tg~~-dg~i~iwd~~~--~~~~ 351 (520)
. |++++++++. ++.|++||+. +++.. ..+.. .|...+..++|+|+|+++++++. ++.|.+|++.. +...
T Consensus 151 ~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~ 230 (365)
T 1jof_A 151 VFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPV 230 (365)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEE
Confidence 5 8999888765 5789999998 67643 22321 13567899999999999888775 78999998763 3210
Q ss_pred cceeeeeeec----CCcC------CEEEEE-ecC--CEEEEEeCC-C-----cEEEEeCCc-ccccCCCCCCCceeeeee
Q 009993 352 ANVLLVATWI----PHTG------PVNSLA-FEF--PWLVSAAGD-G-----KLSLIDVRK-LLRSGRPTSGKRVSRVIE 411 (520)
Q Consensus 352 ~~~~~~~~~~----~h~~------~v~~l~-~~~--~~l~s~s~d-g-----~i~vwd~~~-~~~~~~~~~~~~~~~~~~ 411 (520)
.....+..+. +|.. .+..++ |+| ++|++++.+ + .|.+|++.. +. ...+..
T Consensus 231 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~----------~~~~~~ 300 (365)
T 1jof_A 231 YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS----------IEKQLF 300 (365)
T ss_dssp EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC----------EEEEEE
T ss_pred EccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCC----------EEEeee
Confidence 0001122221 2232 488999 876 577766543 2 899999862 21 000000
Q ss_pred -cCCCcccccCcceeeEEEEe---cCCEEEEecC-CCeEEEEeCCch
Q 009993 412 -VEPPQRMLHGFECNLLSVDI---GADRIVCGGE-EGIVRIWNFSQA 453 (520)
Q Consensus 412 -~~~~~~~~~~~~~~v~~~~~---~~~~l~sg~~-Dg~v~iwd~~~~ 453 (520)
.. ..+....-.++++ ++++|++++. ++.|.+|++...
T Consensus 301 ~~~-----~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 301 LSP-----TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEE-----CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred eee-----cCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 00 0111122346677 7888888876 499999998754
No 164
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.66 E-value=3.1e-13 Score=125.52 Aligned_cols=231 Identities=13% Similarity=0.114 Sum_probs=159.1
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCC------CCceEE--EEe-cCCCEEEEEeC-CCcEEE
Q 009993 139 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP------LGCTIR--AVA-ADKKLLVAGGT-DGFIHC 208 (520)
Q Consensus 139 ~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~------~~~~v~--~~~-~~~~~l~sg~~-dg~i~v 208 (520)
.+|-..+.+++++++++++++.+.++.|.+||.. ++.+..+.. +..... ++. +++.++++... ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 3666788999999999988888889999999987 666665532 222333 443 45555555533 789999
Q ss_pred EEcccCcceeeeccCCccccceEEe-ccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee---eccCEEEE
Q 009993 209 WRAVEVLPHLFDISGSEKQNTQFRL-WEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGL 282 (520)
Q Consensus 209 wd~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~~ 282 (520)
||. ++. ....+ ..+...+.++++ +++.+++...++.|.+||.. ++.+..+. +...+.++
T Consensus 105 ~d~-~g~-------------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i 169 (286)
T 1q7f_A 105 YNQ-YGQ-------------FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGV 169 (286)
T ss_dssp ECT-TSC-------------EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEE
T ss_pred ECC-CCc-------------EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEE
Confidence 994 332 11122 134456888998 56677777778999999964 56666554 23456666
Q ss_pred e--eCCCEEEEEc-CCeEEEEECCCCeeeEEeec-ccccceEEEEecCCCCEEEEEeCCC-eEEEEEcccCccccceeee
Q 009993 283 A--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG-AHVGNTKSLARSHTGDFLFTGGEDG-AIHMYEIINDCTEANVLLV 357 (520)
Q Consensus 283 ~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~tg~~dg-~i~iwd~~~~~~~~~~~~~ 357 (520)
. ++++++++.. ++.|++||.. ++.+..+.. ++...+..++++++|.++++...++ .|.+||.... .+
T Consensus 170 ~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~-------~~ 241 (286)
T 1q7f_A 170 VVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ-------LI 241 (286)
T ss_dssp EECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC-------EE
T ss_pred EECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC-------EE
Confidence 6 6778777766 8999999984 455555532 2236789999999999888888776 9999996432 33
Q ss_pred eeecCC--cCCEEEEEecC-CEEEEEeCCCcEEEEeCCc
Q 009993 358 ATWIPH--TGPVNSLAFEF-PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 358 ~~~~~h--~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~ 393 (520)
..+..+ ...+.++++++ ..|+.++.|+.|++|++..
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 242 SALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred EEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence 333333 23478899976 3444447899999999865
No 165
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.65 E-value=1.4e-13 Score=130.76 Aligned_cols=241 Identities=11% Similarity=0.028 Sum_probs=168.1
Q ss_pred cccEEEEEEccCCCEEEEEeCC------------------------CeEEEEECCCCcEEEEeC-CC--CceEEEEecCC
Q 009993 142 TEAVLTVFVLASAKLLFTSGYD------------------------SIVRMWHLEDGFSIASSK-PL--GCTIRAVAADK 194 (520)
Q Consensus 142 ~~~V~~l~~~~~~~~l~sgs~d------------------------g~v~vwd~~~~~~~~~~~-~~--~~~v~~~~~~~ 194 (520)
-+.|.+++++|+|+++++.+.+ ++|.+||..+++.+..+. ++ ...-.++.+++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4679999999999999988877 479999999898877664 22 22334566899
Q ss_pred CEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc---CCEEEEEe-cCCeEEEEECCCCcEE
Q 009993 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD---LTRIYSGS-WDMTVRVWDRALLKCL 270 (520)
Q Consensus 195 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s-~dg~v~iwd~~~~~~~ 270 (520)
+++++...++.|++||.......+..+...... -.-.++......++++ +..+++.+ .++.|++|| .+++.+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~---g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~ 178 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP---GSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFV 178 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBC---CCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCC---CCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEE
Confidence 988888889999999975431111111000000 0002345578899994 34555554 589999999 567777
Q ss_pred EEeeec-----------cCEEEEe--eC-CCEEEEEc-CCeEEEEECCCCeeeEEeec-ccccceEEEEecCCCCEEEE-
Q 009993 271 KVLRHS-----------DWVYGLA--PH-DTTVASTS-GSDVYIWDTNSGCLLTVVNG-AHVGNTKSLARSHTGDFLFT- 333 (520)
Q Consensus 271 ~~~~~~-----------~~v~~~~--~~-~~~l~~~~-d~~i~iwd~~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~t- 333 (520)
..+... .....++ ++ +.++++.. ++.|++||..+++.+..+.. .+...+..++++| +..+++
T Consensus 179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~ 257 (329)
T 3fvz_A 179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVN 257 (329)
T ss_dssp EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEE
T ss_pred EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeC
Confidence 766421 1255555 66 56666666 78999999998988887742 3566788999999 333333
Q ss_pred ------EeCCCeEEEEEcccCccccceeeeeee---cCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993 334 ------GGEDGAIHMYEIINDCTEANVLLVATW---IPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 334 ------g~~dg~i~iwd~~~~~~~~~~~~~~~~---~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 393 (520)
...+..|++||+.++ ..+..+ .++...+..|++++ ..+++...++.|++|++..
T Consensus 258 g~~~v~~~~~~~v~~~~~~~g------~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 258 GKPYFGDQEPVQGFVMNFSSG------EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCCCTTCSCCCCEEEEETTTC------CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred CCEEeccCCCcEEEEEEcCCC------eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 334558999999888 455555 36677899999977 4777778899999999875
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.65 E-value=2e-14 Score=138.74 Aligned_cols=238 Identities=10% Similarity=0.092 Sum_probs=154.6
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEECC-CCcEEEEeC--CCC-ceEEEEecCCCE--EEEEe-------------
Q 009993 141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLE-DGFSIASSK--PLG-CTIRAVAADKKL--LVAGG------------- 201 (520)
Q Consensus 141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~-~~~~~~~~~--~~~-~~v~~~~~~~~~--l~sg~------------- 201 (520)
+...+..++|+|+|++|++++.+ .|.+|++. +++...... .+. ..-.+++|+++. ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 33467889999999999999888 99999997 776543321 111 112355688984 45553
Q ss_pred CCCcEEEEEccc-CcceeeeccCCccccceEEe-ccCCCCeEEEEE--cCCEEEEEec-CCeEEEEECC-CCcEEE--Ee
Q 009993 202 TDGFIHCWRAVE-VLPHLFDISGSEKQNTQFRL-WEHEGPITSLAL--DLTRIYSGSW-DMTVRVWDRA-LLKCLK--VL 273 (520)
Q Consensus 202 ~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~--~~~~l~s~s~-dg~v~iwd~~-~~~~~~--~~ 273 (520)
.+|.+.+|++.. +.. ......+ ..+...+.+++| ++++++++.. ++.|++||+. +++... .+
T Consensus 117 ~~g~v~v~~~~~~g~~----------~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~ 186 (365)
T 1jof_A 117 FAGYGNVFSVSETGKL----------EKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSV 186 (365)
T ss_dssp SCCEEEEEEECTTCCE----------EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEE
T ss_pred CCceEEEEccCCCCcC----------cceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeE
Confidence 689999999863 321 0011111 135567889999 6778877654 6899999998 776532 23
Q ss_pred e---eccCEEEEe--eCCCEEEEEc--CCeEEEEECC--CCeee---EEee---c---cccc------ceEEEE-ecCCC
Q 009993 274 R---HSDWVYGLA--PHDTTVASTS--GSDVYIWDTN--SGCLL---TVVN---G---AHVG------NTKSLA-RSHTG 328 (520)
Q Consensus 274 ~---~~~~v~~~~--~~~~~l~~~~--d~~i~iwd~~--~~~~~---~~~~---~---~~~~------~i~~l~-~s~~~ 328 (520)
. +...+..+. +++++++++. ++.|.+|++. +++.. ..+. . +|.. .+..++ |+|+|
T Consensus 187 ~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG 266 (365)
T 1jof_A 187 DAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG 266 (365)
T ss_dssp ECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS
T ss_pred ecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC
Confidence 2 234565554 8998887766 6899999765 55542 1222 1 1222 588999 99999
Q ss_pred CEEEEEeCCC------eEEEEEcc-cCccccceeeee-eecCCcCCEEEEEecC-----CEEEEEeCC-CcEEEEeCCc
Q 009993 329 DFLFTGGEDG------AIHMYEII-NDCTEANVLLVA-TWIPHTGPVNSLAFEF-----PWLVSAAGD-GKLSLIDVRK 393 (520)
Q Consensus 329 ~~l~tg~~dg------~i~iwd~~-~~~~~~~~~~~~-~~~~h~~~v~~l~~~~-----~~l~s~s~d-g~i~vwd~~~ 393 (520)
++|++++.+. .|.+|++. ++.. ..+. ....+...+..++|+| ++|++++.+ +.|.+|++..
T Consensus 267 ~~l~v~~~~~~~~~~~~i~v~~~~~~g~~----~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 267 KYMFASSRANKFELQGYIAGFKLRDCGSI----EKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp SEEEEEEEESSTTSCCEEEEEEECTTSCE----EEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred CEEEEECCCCCCCCCCeEEEEEECCCCCE----EEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 9888765432 89999996 3411 1111 1223333445566654 688888764 8999999875
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.65 E-value=1.5e-14 Score=140.69 Aligned_cols=302 Identities=11% Similarity=0.031 Sum_probs=183.2
Q ss_pred EEEECCCCcEEEEeCCCCceEE-------EEecCCCEEEEEeC-CCc--EEEEEcccCcceeeeccCCccccceEEeccC
Q 009993 167 RMWHLEDGFSIASSKPLGCTIR-------AVAADKKLLVAGGT-DGF--IHCWRAVEVLPHLFDISGSEKQNTQFRLWEH 236 (520)
Q Consensus 167 ~vwd~~~~~~~~~~~~~~~~v~-------~~~~~~~~l~sg~~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h 236 (520)
..+|..++..+..+..|..... +++|||+.|+.++. +|. |.+||+.++.. .....++
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~-------------~~lt~~~ 79 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA-------------TQLTEGR 79 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEE-------------EECCCSS
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCce-------------EEeeeCC
Confidence 3457778888888877765544 47899999998887 674 77788776531 1222344
Q ss_pred CCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEE----EEeeCCCEEEEE-----------------
Q 009993 237 EGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVY----GLAPHDTTVAST----------------- 292 (520)
Q Consensus 237 ~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~----~~~~~~~~l~~~----------------- 292 (520)
...+....| +++.|+.++.++.|++||+.+++...... +...+. .+.+++..++..
T Consensus 80 ~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~ 159 (388)
T 3pe7_A 80 GDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFH 159 (388)
T ss_dssp CBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHH
T ss_pred CCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhh
Confidence 444444556 88899999999999999999998776665 333232 234788888742
Q ss_pred -----c-CCeEEEEECCCCeeeEEeecccccceEEEEecC-CCCEEEEEeCC------CeEEEEEcccCccccceeeeee
Q 009993 293 -----S-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH-TGDFLFTGGED------GAIHMYEIINDCTEANVLLVAT 359 (520)
Q Consensus 293 -----~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~tg~~d------g~i~iwd~~~~~~~~~~~~~~~ 359 (520)
. +..|++||+.+++..... .+...+..+.|+| +|+.|+....+ ..|.++|..... ...
T Consensus 160 ~~~~~~~~~~l~~~d~~~g~~~~l~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-------~~~ 230 (388)
T 3pe7_A 160 EFYFTKPCCRLMRVDLKTGESTVIL--QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-------MRK 230 (388)
T ss_dssp HHGGGCCCEEEEEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-------CEE
T ss_pred hhhccCCcceEEEEECCCCceEEee--cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-------eEE
Confidence 1 367999999998765544 3666789999999 99988877654 367777876552 223
Q ss_pred ecCCc--CCEEEEEecC--CEEEEEeC-CC----cEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEE
Q 009993 360 WIPHT--GPVNSLAFEF--PWLVSAAG-DG----KLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVD 430 (520)
Q Consensus 360 ~~~h~--~~v~~l~~~~--~~l~s~s~-dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 430 (520)
+..+. ..+....|+| +.|+..+. ++ .|++||+.++... .+.............. -..++
T Consensus 231 l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~----------~l~~~~~~~~~~~~~~--~~~~s 298 (388)
T 3pe7_A 231 VKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENR----------QLTSMPACSHLMSNYD--GSLMV 298 (388)
T ss_dssp SCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEE----------EEEEECCEEEEEECTT--SSEEE
T ss_pred eeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceE----------EEEcCCCceeeeecCC--CCeEc
Confidence 33333 3577888976 45544332 22 3999999875211 1111110000000011 12577
Q ss_pred ecCCEEEEe---------cCCCeEEEEeCCchHhHHHHhhhhccc-ccchhhhhccceeeeccCCCcccccccccccCCC
Q 009993 431 IGADRIVCG---------GEEGIVRIWNFSQAFEIERRARALRGI-RLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPM 500 (520)
Q Consensus 431 ~~~~~l~sg---------~~Dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~g~~~~~~s~~~~~~~~ 500 (520)
++++.|+.. +.+..|++||+.++... ......... ............++|+|||++++..+-.
T Consensus 299 pdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~------ 371 (388)
T 3pe7_A 299 GDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV------ 371 (388)
T ss_dssp EEECCC------------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT------
T ss_pred cCCCcceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEEEEecC------
Confidence 888866543 55779999999876431 110000000 0000000124678999999999887642
Q ss_pred CCCcceeeec
Q 009993 501 NGNRRSVWHN 510 (520)
Q Consensus 501 ~~~~~~~~~~ 510 (520)
.....+|..
T Consensus 372 -~g~~~l~~~ 380 (388)
T 3pe7_A 372 -HGKPALYLA 380 (388)
T ss_dssp -TSSCEEEEE
T ss_pred -CCceeEEEE
Confidence 123467765
No 168
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.65 E-value=2.4e-14 Score=136.93 Aligned_cols=188 Identities=12% Similarity=0.056 Sum_probs=140.1
Q ss_pred cEEEEEEccCCCEEE-EEeCCCeEEEEECCCCcEEEEeCCCC--------ceEEEEecCCCEEEEEeCC-----------
Q 009993 144 AVLTVFVLASAKLLF-TSGYDSIVRMWHLEDGFSIASSKPLG--------CTIRAVAADKKLLVAGGTD----------- 203 (520)
Q Consensus 144 ~V~~l~~~~~~~~l~-sgs~dg~v~vwd~~~~~~~~~~~~~~--------~~v~~~~~~~~~l~sg~~d----------- 203 (520)
.+..++|+|+|++++ ++..++.|.+||+.+++.+..+.... ..-.+++|+++++++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence 577899999998655 55678999999999998877665322 2345678999999998865
Q ss_pred -CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeecc---
Q 009993 204 -GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSD--- 277 (520)
Q Consensus 204 -g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~--- 277 (520)
+.|.+||+.++.. ....... .+...+.+++| +++ +++++. .|.+||..+++.+..+....
T Consensus 124 ~~~i~~~d~~~~~~----------~~~~~~~-~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~ 189 (349)
T 1jmx_B 124 PPRLEVFSTADGLE----------AKPVRTF-PMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNR 189 (349)
T ss_dssp CCEEEEEEGGGGGG----------BCCSEEE-ECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCC
T ss_pred CCeEEEEECCCccc----------cceeeec-cCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCC
Confidence 8999999987531 1111222 23346788888 667 666544 49999999988776654211
Q ss_pred ------------------------------------------------------------------CEEE--Eee-CCCE
Q 009993 278 ------------------------------------------------------------------WVYG--LAP-HDTT 288 (520)
Q Consensus 278 ------------------------------------------------------------------~v~~--~~~-~~~~ 288 (520)
.+.+ +++ ++++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~ 269 (349)
T 1jmx_B 190 KGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ 269 (349)
T ss_dssp TTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTE
T ss_pred ccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCE
Confidence 1112 226 8888
Q ss_pred EEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993 289 VASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND 348 (520)
Q Consensus 289 l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~ 348 (520)
++++ ++.|.+||+.+++.+..+.. ...+.+++|+|++++|++++.++.|.+||+.+.
T Consensus 270 l~~~-~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 270 IYGV-LNRLAKYDLKQRKLIKAANL--DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EEEE-ESEEEEEETTTTEEEEEEEC--SSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred EEEE-cCeEEEEECccCeEEEEEcC--CCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 8888 89999999999998887763 345779999999998888888999999999887
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.63 E-value=3e-14 Score=136.95 Aligned_cols=286 Identities=12% Similarity=0.083 Sum_probs=180.4
Q ss_pred CCCEEEEEe------CCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeC----------CCcEEEEEcccCcc
Q 009993 153 SAKLLFTSG------YDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGT----------DGFIHCWRAVEVLP 216 (520)
Q Consensus 153 ~~~~l~sgs------~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~----------dg~i~vwd~~~~~~ 216 (520)
++++++... .|+.|.+||..+++.+..+..+..+-..++|++++++++.. ++.|.+||..+...
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~ 93 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF 93 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE
Confidence 455565543 37899999999999988887766666677899999998863 67899999876531
Q ss_pred eeeeccCCccccceEEecc------CCCCeEEEEE--cCCEEEEEec--CCeEEEEECCCCcEEEE-eeeccCE-EEEee
Q 009993 217 HLFDISGSEKQNTQFRLWE------HEGPITSLAL--DLTRIYSGSW--DMTVRVWDRALLKCLKV-LRHSDWV-YGLAP 284 (520)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~------h~~~v~~l~~--~~~~l~s~s~--dg~v~iwd~~~~~~~~~-~~~~~~v-~~~~~ 284 (520)
...+.. +......+++ ++++|+++.. +++|.+||+.+++.+.. +...... ..+.|
T Consensus 94 -------------~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p 160 (361)
T 2oiz_A 94 -------------EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQP 160 (361)
T ss_dssp -------------EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECT
T ss_pred -------------EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcC
Confidence 122211 2234556777 7889988874 58999999999998887 6643321 12335
Q ss_pred CC-CEEEEEc-CCeEEEEECCC-CeeeEEee-----cccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceee
Q 009993 285 HD-TTVASTS-GSDVYIWDTNS-GCLLTVVN-----GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL 356 (520)
Q Consensus 285 ~~-~~l~~~~-d~~i~iwd~~~-~~~~~~~~-----~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~ 356 (520)
++ ..+++.+ ||.+.+|+... ++...... .....++ .+.+++++..++..+.++.|.++|+..... ..
T Consensus 161 ~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~----~~ 235 (361)
T 2oiz_A 161 NRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEV----KV 235 (361)
T ss_dssp TSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSC----EE
T ss_pred CCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCc----ee
Confidence 44 4555555 89999999865 54432211 1112222 334467777778788899999999875521 11
Q ss_pred eeeec--C----C----cCCEEEEEecC--CEEEEEeC-----------CCcEEEEeCCcccccCCCCCCCceeeeeecC
Q 009993 357 VATWI--P----H----TGPVNSLAFEF--PWLVSAAG-----------DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVE 413 (520)
Q Consensus 357 ~~~~~--~----h----~~~v~~l~~~~--~~l~s~s~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 413 (520)
...+. . + ......++|++ +.++++.. .+.|.+||+.+.+..
T Consensus 236 ~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v---------------- 299 (361)
T 2oiz_A 236 DGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV---------------- 299 (361)
T ss_dssp EEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE----------------
T ss_pred cccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE----------------
Confidence 11110 0 0 01111256654 55555432 347999999875221
Q ss_pred CCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCch--HhHHHHhhhhcccccchhhhhccceeeeccCCC
Q 009993 414 PPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQA--FEIERRARALRGIRLENRMRRRKLQTEMSSKGG 486 (520)
Q Consensus 414 ~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 486 (520)
..+..+...-.++++++++|++++. +.|.+||..++ +.+.+... .-+.+..++++|||+
T Consensus 300 ---~~i~~~~p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~----------~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 300 ---ARIPGRDALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEG----------AAEASLQVQFHPVGG 360 (361)
T ss_dssp ---EEEECTTCCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETT----------SCSSEEEEEECCCSC
T ss_pred ---EEEecCCeeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEecc----------CCCCcEEEEecCCCC
Confidence 1112222445577778888888887 99999999987 65433111 123457889999986
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.60 E-value=3.3e-14 Score=138.67 Aligned_cols=228 Identities=10% Similarity=-0.021 Sum_probs=145.4
Q ss_pred cEEEEEEccCCCEEEEEeCC---CeEEEEECCCCcEEEEeCCCCceE--EEEecCCCEEEEEeCCCcEEEEEcccCccee
Q 009993 144 AVLTVFVLASAKLLFTSGYD---SIVRMWHLEDGFSIASSKPLGCTI--RAVAADKKLLVAGGTDGFIHCWRAVEVLPHL 218 (520)
Q Consensus 144 ~V~~l~~~~~~~~l~sgs~d---g~v~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~ 218 (520)
.+..++|+|||++|+.+..+ ..|.+||+.+++......++.... ..++|+++.|+.++.++.|.+||+.++....
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~ 116 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV 116 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence 36778999999998877543 478889998887654443333222 4678999999999999999999988764221
Q ss_pred eeccCCccccceEEeccCCCCeEE---E----------------EE--cCCEEEEE-----ecCCeEEEEECCCCcEEEE
Q 009993 219 FDISGSEKQNTQFRLWEHEGPITS---L----------------AL--DLTRIYSG-----SWDMTVRVWDRALLKCLKV 272 (520)
Q Consensus 219 ~~~~~~~~~~~~~~~~~h~~~v~~---l----------------~~--~~~~l~s~-----s~dg~v~iwd~~~~~~~~~ 272 (520)
. ...+...... + .+ +++.++.+ ..+..|.+||+.+++....
T Consensus 117 ~-------------~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~ 183 (396)
T 3c5m_A 117 I-------------YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI 183 (396)
T ss_dssp E-------------EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE
T ss_pred E-------------EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEee
Confidence 1 1111111111 1 11 23333322 3556899999999887766
Q ss_pred eeeccCEEEEe--e-CCCEEEEEc-C------CeEEEEECCCCeeeEEeeccc-ccceEEEEecCCCCEEEEEeCC----
Q 009993 273 LRHSDWVYGLA--P-HDTTVASTS-G------SDVYIWDTNSGCLLTVVNGAH-VGNTKSLARSHTGDFLFTGGED---- 337 (520)
Q Consensus 273 ~~~~~~v~~~~--~-~~~~l~~~~-d------~~i~iwd~~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~tg~~d---- 337 (520)
..+...+..+. | ++..++..+ + ..|.+||+..++.. .+.... ...+..+.|+|+|+.|+.++.+
T Consensus 184 ~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 262 (396)
T 3c5m_A 184 HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQT 262 (396)
T ss_dssp EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTC
T ss_pred ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCc
Confidence 66666666655 6 677666554 2 36899998766533 232211 3357889999999987766543
Q ss_pred -CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEe----------------CCCcEEEEeCCcc
Q 009993 338 -GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAA----------------GDGKLSLIDVRKL 394 (520)
Q Consensus 338 -g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s----------------~dg~i~vwd~~~~ 394 (520)
+.|++||+.++.. ..+..+.+ .. +.|+| .++++++ .++.|++||+.++
T Consensus 263 ~~~l~~~d~~~g~~----~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 263 DRVIYKANPETLEN----EEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp CEEEEEECTTTCCE----EEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred cceEEEEECCCCCe----EEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence 4599999987732 12222222 22 66754 5676654 3478999998764
No 171
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.55 E-value=4.2e-12 Score=120.29 Aligned_cols=253 Identities=9% Similarity=-0.001 Sum_probs=166.4
Q ss_pred CCCeEEEEECCCCcEEEEeC------CCCceEEEEecCCC-EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEec
Q 009993 162 YDSIVRMWHLEDGFSIASSK------PLGCTIRAVAADKK-LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW 234 (520)
Q Consensus 162 ~dg~v~vwd~~~~~~~~~~~------~~~~~v~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 234 (520)
.+++|.++|.++++....+. ........+..++. .+++...++.|.+||..++. ....+.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~-------------~~~~i~ 81 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFK-------------EVGRIT 81 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCC-------------EEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccE-------------EEEEcC
Confidence 48999999999998765441 12233444543444 44555557999999998763 222332
Q ss_pred cCCCCeEEEEE-cCCEEEEEe-cCCeEEEEECCCCcEEEEeeecc------CEEEEeeCCCEEEEEc---CCeEEEEECC
Q 009993 235 EHEGPITSLAL-DLTRIYSGS-WDMTVRVWDRALLKCLKVLRHSD------WVYGLAPHDTTVASTS---GSDVYIWDTN 303 (520)
Q Consensus 235 ~h~~~v~~l~~-~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~------~v~~~~~~~~~l~~~~---d~~i~iwd~~ 303 (520)
.......+++ .+..++.+. .++.|.+||..+++....+.... ....+..++..++++. ++.|.++|+.
T Consensus 82 -~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~ 160 (328)
T 3dsm_A 82 -GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTE 160 (328)
T ss_dssp -CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETT
T ss_pred -CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECC
Confidence 3456788888 444666666 78999999999999887776333 3344443444444442 6899999999
Q ss_pred CCeeeEEeecccccceEEEEecCCCCEEEEEeCC----------CeEEEEEcccCccccceeeeeeecCC-cCCEEEEEe
Q 009993 304 SGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED----------GAIHMYEIINDCTEANVLLVATWIPH-TGPVNSLAF 372 (520)
Q Consensus 304 ~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~h-~~~v~~l~~ 372 (520)
+++.+..+.. ......+.++|+|++++++..+ +.|.++|..+. +....+... ...+..+++
T Consensus 161 t~~~~~~i~~--g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~------~v~~~~~~~~g~~p~~la~ 232 (328)
T 3dsm_A 161 TDKVVDELTI--GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF------TVEKQFKFKLGDWPSEVQL 232 (328)
T ss_dssp TTEEEEEEEC--SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT------EEEEEEECCTTCCCEEEEE
T ss_pred CCeEEEEEEc--CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC------eEEEEEecCCCCCceeEEE
Confidence 9998887763 3345688999999977776654 78999999887 344343322 236789999
Q ss_pred cC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCccccc--CcceeeEEEEe-cCCEEEEe----cCCC
Q 009993 373 EF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH--GFECNLLSVDI-GADRIVCG----GEEG 443 (520)
Q Consensus 373 ~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~-~~~~l~sg----~~Dg 443 (520)
+| +.|+++.. .|.+||..+...... ..+. +....-.++++ ++..+++. ..++
T Consensus 233 ~~d~~~lyv~~~--~v~~~d~~t~~~~~~-----------------~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~ 293 (328)
T 3dsm_A 233 NGTRDTLYWINN--DIWRMPVEADRVPVR-----------------PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQG 293 (328)
T ss_dssp CTTSCEEEEESS--SEEEEETTCSSCCSS-----------------CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEE
T ss_pred ecCCCEEEEEcc--EEEEEECCCCceeee-----------------eeecCCCCceEEEEEcCCCCeEEEEcccccccCC
Confidence 85 57776654 899999987532100 0011 12223345555 33466666 6789
Q ss_pred eEEEEeCCchHhH
Q 009993 444 IVRIWNFSQAFEI 456 (520)
Q Consensus 444 ~v~iwd~~~~~~~ 456 (520)
.|.+||.. ++.+
T Consensus 294 ~V~v~d~~-g~~~ 305 (328)
T 3dsm_A 294 IVYRYSPQ-GKLI 305 (328)
T ss_dssp EEEEECTT-CCEE
T ss_pred EEEEECCC-CCEE
Confidence 99999987 5443
No 172
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.54 E-value=5.9e-12 Score=119.28 Aligned_cols=230 Identities=10% Similarity=-0.035 Sum_probs=158.1
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCC-CceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeec
Q 009993 143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPL-GCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDI 221 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 221 (520)
.....+.+. +++++++...++.|.+||..+++.+.++... ...-.++++++..+++...++.|.+||..++..
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~----- 117 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEI----- 117 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEE-----
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeE-----
Confidence 445777774 4556666666899999999999998887533 233345557774444444899999999887632
Q ss_pred cCCccccceEEeccC-----CCCeEEEEEcCCEEEEEe--cCCeEEEEECCCCcEEEEeeeccCEEE--EeeCCCEEEEE
Q 009993 222 SGSEKQNTQFRLWEH-----EGPITSLALDLTRIYSGS--WDMTVRVWDRALLKCLKVLRHSDWVYG--LAPHDTTVAST 292 (520)
Q Consensus 222 ~~~~~~~~~~~~~~h-----~~~v~~l~~~~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~ 292 (520)
...+... ......++++++.++.+. .+++|.++|..+++.+..+........ +.+++++++++
T Consensus 118 --------~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~ 189 (328)
T 3dsm_A 118 --------TGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTIT 189 (328)
T ss_dssp --------EEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEB
T ss_pred --------EEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEE
Confidence 1111111 113455666777777766 488999999999998888763333333 34778877776
Q ss_pred c-C----------CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec
Q 009993 293 S-G----------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI 361 (520)
Q Consensus 293 ~-d----------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 361 (520)
. + +.|.++|..+++....+..........++++|+++.++++.. .|.+||..++.... ...+.
T Consensus 190 ~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~----~~~~~ 263 (328)
T 3dsm_A 190 DGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPV----RPFLE 263 (328)
T ss_dssp CCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCS----SCSBC
T ss_pred CCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceee----eeeec
Confidence 6 4 689999999998877765322347899999999999888765 89999998773210 11111
Q ss_pred CCcCCEEEEEecC---CEEEEE----eCCCcEEEEeCC
Q 009993 362 PHTGPVNSLAFEF---PWLVSA----AGDGKLSLIDVR 392 (520)
Q Consensus 362 ~h~~~v~~l~~~~---~~l~s~----s~dg~i~vwd~~ 392 (520)
.+......++++| ..+++. ..++.|.+||..
T Consensus 264 ~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 264 FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred CCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 2245789999976 355555 568899999987
No 173
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.54 E-value=4.3e-12 Score=121.32 Aligned_cols=251 Identities=11% Similarity=0.123 Sum_probs=159.0
Q ss_pred ccEEEEEEccCCCEEEEEe---------CCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCC---Cc--EEE
Q 009993 143 EAVLTVFVLASAKLLFTSG---------YDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTD---GF--IHC 208 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~sgs---------~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~d---g~--i~v 208 (520)
..+...++ ||+.++... .++.|.+||+.+++... + .......++|+|+.|+.++.+ +. |.+
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l--~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~ 89 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I--ENATMPRISPDGKKIAFMRANEEKKVSEIWV 89 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E--ESCEEEEECTTSSEEEEEEEETTTTEEEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c--ccCCCeEECCCCCEEEEEEeccCCCcceEEE
Confidence 45677777 888877642 26789999999886543 3 333445788999999887754 33 777
Q ss_pred EEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecC---------------------------CeE
Q 009993 209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD---------------------------MTV 259 (520)
Q Consensus 209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d---------------------------g~v 259 (520)
|++.++. ...+..+.. +..+.| +++.|+.++.+ ..|
T Consensus 90 ~~~~~g~--------------~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 154 (347)
T 2gop_A 90 ADLETLS--------------SKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTF 154 (347)
T ss_dssp EETTTTE--------------EEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEE
T ss_pred EECCCCc--------------eEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceE
Confidence 7776552 112222233 888999 77888877643 579
Q ss_pred EEEECCCCcEEEEeeeccCEEE--EeeCCCEEEEEc-C------C---eEEEEECCCCeeeEEeecccccceEEEEecCC
Q 009993 260 RVWDRALLKCLKVLRHSDWVYG--LAPHDTTVASTS-G------S---DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT 327 (520)
Q Consensus 260 ~iwd~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~-d------~---~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~ 327 (520)
.+||+.+++.+..+... .+.. +++++ +++++. + . .|.++| +++.. .+.. + ..+..+ +|+
T Consensus 155 ~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~-~-~~~~~~--spd 225 (347)
T 2gop_A 155 WIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEE-KMFE-K-VSFYAV--DSD 225 (347)
T ss_dssp EEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEE-EEEE-E-ESEEEE--EEC
T ss_pred EEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceE-Eecc-C-cceeeE--CCC
Confidence 99999988774444332 4444 44888 777665 3 1 355555 55543 3332 3 555554 999
Q ss_pred CCEEEEEeCC--------CeEEEEEcccCccccceeeeeeecCCcCCEEE-EEecCCEEEEEeCCCcEEEEeCCcccccC
Q 009993 328 GDFLFTGGED--------GAIHMYEIINDCTEANVLLVATWIPHTGPVNS-LAFEFPWLVSAAGDGKLSLIDVRKLLRSG 398 (520)
Q Consensus 328 ~~~l~tg~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~l~s~s~dg~i~vwd~~~~~~~~ 398 (520)
|+.|+.++.+ ..|.+|| ++ .......+|...+.. +.|+..++++++.++.++|| +.++
T Consensus 226 g~~l~~~~~~~~~~~~~~~~l~~~d--~~------~~~~l~~~~~~~~~~~~~~sdg~~~~~~~~~~~~l~-~~~g---- 292 (347)
T 2gop_A 226 GERILLYGKPEKKYMSEHNKLYIYD--GK------EVMGILDEVDRGVGQAKIKDGKVYFTLFEEGSVNLY-IWDG---- 292 (347)
T ss_dssp SSCEEEEECCSSSCCCSSCEEEEEC--SS------CEEESSTTCCSEEEEEEEETTEEEEEEEETTEEEEE-EESS----
T ss_pred CCEEEEEEccccCCccccceEEEEC--CC------ceEeccccCCcccCCccEEcCcEEEEEecCCcEEEE-EcCC----
Confidence 9988877654 3677777 43 233334456677876 88863378888999999999 8632
Q ss_pred CCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeE-EEEeCC
Q 009993 399 RPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIV-RIWNFS 451 (520)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v-~iwd~~ 451 (520)
.... +..+...+.++.+++..+++++.++.. .+|.+.
T Consensus 293 ---------------~~~~-~~~~~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 293 ---------------EIKP-IAKGRHWIMGFDVDEIVVYLKETATRLRELFTWD 330 (347)
T ss_dssp ---------------SEEE-EECSSSEEEEEEESSSEEEEEECSSSCCEEEEES
T ss_pred ---------------ceEE-EecCCCeEEeeeeeCcEEEEEcCCCChHHheEeC
Confidence 1111 112244566666655666777777765 777765
No 174
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.54 E-value=1.8e-12 Score=124.59 Aligned_cols=235 Identities=12% Similarity=0.028 Sum_probs=157.3
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEe----------CCCeEEEEECCCCcEEEEeCCC--------CceEEEEecCCCE
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSG----------YDSIVRMWHLEDGFSIASSKPL--------GCTIRAVAADKKL 196 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs----------~dg~v~vwd~~~~~~~~~~~~~--------~~~v~~~~~~~~~ 196 (520)
+.++..+..+ .++|+|||++++++. .+++|.+||..+++.+..+... ...-.+++|++++
T Consensus 44 ~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~ 121 (361)
T 2oiz_A 44 LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKF 121 (361)
T ss_dssp EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSE
T ss_pred EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCE
Confidence 3455555555 899999999999886 3678999999999888776421 2234578899999
Q ss_pred EEEEeC--CCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--c-CCEEEEEecCCeEEEEECCC-CcEE
Q 009993 197 LVAGGT--DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D-LTRIYSGSWDMTVRVWDRAL-LKCL 270 (520)
Q Consensus 197 l~sg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~-~~~l~s~s~dg~v~iwd~~~-~~~~ 270 (520)
|+++.. ++.|.+||+.++. ....+..+.+. ..+.+ + +..+++.+.||.+.+|+... ++..
T Consensus 122 l~v~n~~~~~~v~v~d~~~~~-------------~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~ 187 (361)
T 2oiz_A 122 IVLQNASPATSIGIVDVAKGD-------------YVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVA 187 (361)
T ss_dssp EEEEEESSSEEEEEEETTTTE-------------EEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEE
T ss_pred EEEECCCCCCeEEEEECCCCc-------------EEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEe
Confidence 998874 5899999998763 12220112111 11223 2 36788889999999999865 5544
Q ss_pred EEe------e-eccCEE-EEeeCCCEEEEEc-CCeEEEEECCCCee--eEEeec-c----c----ccceEEEEecCCCCE
Q 009993 271 KVL------R-HSDWVY-GLAPHDTTVASTS-GSDVYIWDTNSGCL--LTVVNG-A----H----VGNTKSLARSHTGDF 330 (520)
Q Consensus 271 ~~~------~-~~~~v~-~~~~~~~~l~~~~-d~~i~iwd~~~~~~--~~~~~~-~----~----~~~i~~l~~s~~~~~ 330 (520)
... . ...++. ...+++..++..+ ++.|.++|+..+.. ...+.. . + ......++|+|+++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~ 267 (361)
T 2oiz_A 188 SQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGR 267 (361)
T ss_dssp EEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTE
T ss_pred eeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCe
Confidence 221 1 111211 1235666666666 89999999876532 222110 0 0 111223789999888
Q ss_pred EEEEeC-----------CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993 331 LFTGGE-----------DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 331 l~tg~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~ 394 (520)
++++.. .+.|.+||+.+. +.+.++..+. +.+++|+| ++|++++. +.|.+||..++
T Consensus 268 lyv~~~~~~~~~~~~~~~~~v~viD~~t~------~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 268 MYVFMHPDGKEGTHKFPAAEIWVMDTKTK------QRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp EEEEEESSCCTTCTTCCCSEEEEEETTTT------EEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred EEEEEccCCCcccccCCCceEEEEECCCC------cEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 777643 348999999998 6777777776 89999976 68888876 99999999885
No 175
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.53 E-value=1.2e-10 Score=108.41 Aligned_cols=233 Identities=7% Similarity=0.008 Sum_probs=156.7
Q ss_pred hccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEe-CCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcccC
Q 009993 138 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS-KPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAVEV 214 (520)
Q Consensus 138 l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~~~ 214 (520)
+..+...+.+++++++|++.++...++.|.+||.. +...... ..+...+..+ .+++.+.++...++.|..||.. +
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 34556789999999999988777668999999988 5543322 2233444444 4778877777768889999864 2
Q ss_pred cceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEe-e-eccCEEEEe--eCCCE
Q 009993 215 LPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL-R-HSDWVYGLA--PHDTT 288 (520)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~-~~~~v~~~~--~~~~~ 288 (520)
.. ....+......+.++++ ++...++...++.|..||. +++..... . ....+..+. +++++
T Consensus 88 ~~------------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l 154 (299)
T 2z2n_A 88 II------------KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNAL 154 (299)
T ss_dssp CE------------EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCE
T ss_pred cE------------EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCE
Confidence 11 11112224557888888 4556666666789999998 55544322 1 334566666 67777
Q ss_pred EEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCE
Q 009993 289 VASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPV 367 (520)
Q Consensus 289 l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v 367 (520)
+++.. ++.|..||. +++............+..++++++|.++++...++.|.+||. ++. ........+...+
T Consensus 155 ~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~-----~~~~~~~~~~~~~ 227 (299)
T 2z2n_A 155 WFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE-----ITEFKIPTPNARP 227 (299)
T ss_dssp EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC-----EEEEECSSTTCCE
T ss_pred EEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc-----EEEEECCCCCCCc
Confidence 77776 689999999 665544322234556889999999998777777889999998 542 1112233455678
Q ss_pred EEEEecC--CEEEEEeCCCcEEEEeCC
Q 009993 368 NSLAFEF--PWLVSAAGDGKLSLIDVR 392 (520)
Q Consensus 368 ~~l~~~~--~~l~s~s~dg~i~vwd~~ 392 (520)
.++++++ ..+++...++.|.+||..
T Consensus 228 ~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 228 HAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp EEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred eeEEECCCCCEEEeccCCceEEEECCC
Confidence 9999975 444444467899999983
No 176
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.52 E-value=1.7e-11 Score=113.75 Aligned_cols=232 Identities=11% Similarity=0.145 Sum_probs=149.2
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc--CCEEEEEec--CCeEEEEE
Q 009993 188 RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSW--DMTVRVWD 263 (520)
Q Consensus 188 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~--dg~v~iwd 263 (520)
.++.++++++++...++.|.+||........+...+ ...++...+..++++ ...++.+.. ++.|.+||
T Consensus 35 v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~--------~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 35 VAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECG--------KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBS--------SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred EEECCCCCEEEEECCCCEEEEECCCCcEEEEecccC--------CCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 345588888888888999999997532111100000 001345678899982 345555553 89999999
Q ss_pred CCCCcEEEEee--eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeec-ccccceEEEEecCCCCEEEEEeCC
Q 009993 264 RALLKCLKVLR--HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG-AHVGNTKSLARSHTGDFLFTGGED 337 (520)
Q Consensus 264 ~~~~~~~~~~~--~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~tg~~d 337 (520)
.+++.+..+. +...+.++. ++++++++.. ++.|.+||.. ++.+..+.. .+...+..++++|+|+++++...+
T Consensus 107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~ 184 (286)
T 1q7f_A 107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA 184 (286)
T ss_dssp -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCC
Confidence 5677776664 334566665 7788777776 7899999964 555555532 344578999999999988888889
Q ss_pred CeEEEEEcccCccccceeeeeeecC--CcCCEEEEEecC--CEEEEEeCCC-cEEEEeCCcccccCCCCCCCceeeeeec
Q 009993 338 GAIHMYEIINDCTEANVLLVATWIP--HTGPVNSLAFEF--PWLVSAAGDG-KLSLIDVRKLLRSGRPTSGKRVSRVIEV 412 (520)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~--~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 412 (520)
+.|++||.... .+..+.. +...+..+++++ .++++...++ .|.+||..... ...+..
T Consensus 185 ~~i~~~~~~g~-------~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~----------~~~~~~- 246 (286)
T 1q7f_A 185 HCVKVFNYEGQ-------YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQL----------ISALES- 246 (286)
T ss_dssp TEEEEEETTCC-------EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCE----------EEEEEE-
T ss_pred CEEEEEcCCCC-------EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCE----------EEEEcc-
Confidence 99999997443 3334433 346789999975 5666766675 99999964310 111100
Q ss_pred CCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCch
Q 009993 413 EPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQA 453 (520)
Q Consensus 413 ~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~ 453 (520)
. .........++++++.++++ +.|++|++|++...
T Consensus 247 ~-----~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 247 K-----VKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp S-----SCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred c-----CCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 0 00011223455556656666 57999999998653
No 177
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.51 E-value=5.7e-12 Score=132.69 Aligned_cols=242 Identities=9% Similarity=-0.071 Sum_probs=163.1
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCC-----eEEEEECCCCcEEEEeC-CCCceEEEEecCCCEEEEEeCCCc-------
Q 009993 139 YGHTEAVLTVFVLASAKLLFTSGYDS-----IVRMWHLEDGFSIASSK-PLGCTIRAVAADKKLLVAGGTDGF------- 205 (520)
Q Consensus 139 ~~h~~~V~~l~~~~~~~~l~sgs~dg-----~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~l~sg~~dg~------- 205 (520)
.+|...+..++|||||++|+.++.++ .|++||+.+++.+.... .....-.+++||++.|+.++.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCcccccccc
Confidence 35666789999999999998776543 89999999998765322 222234578899999999988766
Q ss_pred ---------EEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec-----CCeEEEEECCC---
Q 009993 206 ---------IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-----DMTVRVWDRAL--- 266 (520)
Q Consensus 206 ---------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-----dg~v~iwd~~~--- 266 (520)
|++|++.++... ...+.....|...+..+.| ++++|+.++. +..|.+||+.+
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~---------~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~ 271 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSE---------DILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESN 271 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGG---------CEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred ccccCCCCEEEEEECCCCccc---------ceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccc
Confidence 999998765310 0111122234556778888 7888887765 57899999986
Q ss_pred ---Cc-EEEEee-eccCE-EEEeeCCCEEEEEc--C---CeEEEEECCCCee--eEEeecccc-cceEEEEecCCCCEEE
Q 009993 267 ---LK-CLKVLR-HSDWV-YGLAPHDTTVASTS--G---SDVYIWDTNSGCL--LTVVNGAHV-GNTKSLARSHTGDFLF 332 (520)
Q Consensus 267 ---~~-~~~~~~-~~~~v-~~~~~~~~~l~~~~--d---~~i~iwd~~~~~~--~~~~~~~~~-~~i~~l~~s~~~~~l~ 332 (520)
+. ....+. +...+ ..+.+++..++..+ + ..|.+||+.++.. ...+...+. ..+..++|++++.+++
T Consensus 272 ~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 272 GITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp SSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred ccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 42 233333 33333 34668888776655 2 3699999988742 234432222 2678899988888888
Q ss_pred EEeCCCe--EEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEE-EEe---CCCcEEEEeCCccc
Q 009993 333 TGGEDGA--IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLV-SAA---GDGKLSLIDVRKLL 395 (520)
Q Consensus 333 tg~~dg~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~-s~s---~dg~i~vwd~~~~~ 395 (520)
+...|+. |.+|++.++ ..+..+..+.+.+..+.+++ +.++ +.+ ..++|.+||+.++.
T Consensus 352 ~~~~~g~~~l~~~~~~~g------~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATG------ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTC------CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCC------CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8888986 555666555 34455666777888888865 3443 333 35789999997654
No 178
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.51 E-value=4.7e-12 Score=121.05 Aligned_cols=220 Identities=11% Similarity=0.003 Sum_probs=146.2
Q ss_pred ccEEEEEEccCCCEEEEEeCC---C--eEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCC--------------
Q 009993 143 EAVLTVFVLASAKLLFTSGYD---S--IVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTD-------------- 203 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~sgs~d---g--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~d-------------- 203 (520)
..+..++|+|||++|+.++.+ + .|.+|++.+++.......+...-..++|+++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~ 138 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP 138 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESEEEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCCccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence 567889999999999987754 3 478889888876554433323334566999988887642
Q ss_pred -------------CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCC-------eEEE
Q 009993 204 -------------GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM-------TVRV 261 (520)
Q Consensus 204 -------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg-------~v~i 261 (520)
..|.+||+.++.. ...+.. . .+..+.| ++ .+++++.++ ...+
T Consensus 139 ~~~~g~~~~~~~~~~l~~~d~~~~~~-------------~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l 202 (347)
T 2gop_A 139 AWFDDLGFFDGEKTTFWIFDTESEEV-------------IEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDI 202 (347)
T ss_dssp CC---------CEEEEEEEETTTTEE-------------EEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEE
T ss_pred eeecCcccccCccceEEEEECCCCeE-------------EeeecC-C-CcccccCCCCe-EEEEEecccccccccccccE
Confidence 5688888876531 012222 2 5677788 55 666665542 3344
Q ss_pred EECCCCcEEEEeeeccCEEEEeeCCCEEEEEc-C--------CeEEEEECCCCeeeEEeecccccceEE-EEecCCCCEE
Q 009993 262 WDRALLKCLKVLRHSDWVYGLAPHDTTVASTS-G--------SDVYIWDTNSGCLLTVVNGAHVGNTKS-LARSHTGDFL 331 (520)
Q Consensus 262 wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d--------~~i~iwd~~~~~~~~~~~~~~~~~i~~-l~~s~~~~~l 331 (520)
|.+.+++......+ ..+..++|+|+.++.++ + ..|.+|| +++. ..+...+...+.. +.|+ ++ ++
T Consensus 203 ~~~d~~~~~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~~~~~~~~~~~~s-dg-~~ 276 (347)
T 2gop_A 203 YIWEDGKEEKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-MGILDEVDRGVGQAKIKD-GK-VY 276 (347)
T ss_dssp EEEETTEEEEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-EESSTTCCSEEEEEEEET-TE-EE
T ss_pred EEeCCCceEEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCce-EeccccCCcccCCccEEc-Cc-EE
Confidence 44435554433335 66666789999887665 3 3688888 5544 3343356677886 8999 88 89
Q ss_pred EEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcE-EEEeCC
Q 009993 332 FTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKL-SLIDVR 392 (520)
Q Consensus 332 ~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i-~vwd~~ 392 (520)
++++.++.+++| +.++ .. ..+..+...|.+++|++..+++++.++.. .+|.+.
T Consensus 277 ~~~~~~~~~~l~-~~~g------~~-~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 277 FTLFEEGSVNLY-IWDG------EI-KPIAKGRHWIMGFDVDEIVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEETTEEEEE-EESS------SE-EEEECSSSEEEEEEESSSEEEEEECSSSCCEEEEES
T ss_pred EEEecCCcEEEE-EcCC------ce-EEEecCCCeEEeeeeeCcEEEEEcCCCChHHheEeC
Confidence 999999999999 8743 22 23334577899999988666777777664 777664
No 179
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.51 E-value=7.1e-13 Score=139.19 Aligned_cols=241 Identities=10% Similarity=-0.093 Sum_probs=159.7
Q ss_pred ccccccEEEEEEccCCCEEE-----EEeCCCeEEEEECCCCcEE-E-EeCCCCceEEEEecCCCEEEEEeCCCc------
Q 009993 139 YGHTEAVLTVFVLASAKLLF-----TSGYDSIVRMWHLEDGFSI-A-SSKPLGCTIRAVAADKKLLVAGGTDGF------ 205 (520)
Q Consensus 139 ~~h~~~V~~l~~~~~~~~l~-----sgs~dg~v~vwd~~~~~~~-~-~~~~~~~~v~~~~~~~~~l~sg~~dg~------ 205 (520)
++|...+.+++|||||++|+ .|+.+.+|++||+.+++.+ . .+......-.+++|||+.|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccc
Confidence 46777899999999999998 4555678999999999865 2 122222244578899999999998876
Q ss_pred -------EEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCC----eEEEEECCCCcEEEE
Q 009993 206 -------IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM----TVRVWDRALLKCLKV 272 (520)
Q Consensus 206 -------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg----~v~iwd~~~~~~~~~ 272 (520)
|++|++.++... ...+.....|...+..+.+ ++++|+.++.++ .|.+||..+++....
T Consensus 197 ~~~~~~~v~~~~l~t~~~~---------~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l 267 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSK---------DTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLL 267 (695)
T ss_dssp GGGGGCEEEEEETTSCGGG---------CEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEE
T ss_pred cCCCCCEEEEEECCCCchh---------ceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEe
Confidence 999998776310 1122223345567888888 778888777666 677777766654444
Q ss_pred eeeccCEEE-EeeCCCEEEEEc----CCeEEEEECCCCee--eEEeeccc-ccceEEEEecCCCCEEEEEeCCCeEEEEE
Q 009993 273 LRHSDWVYG-LAPHDTTVASTS----GSDVYIWDTNSGCL--LTVVNGAH-VGNTKSLARSHTGDFLFTGGEDGAIHMYE 344 (520)
Q Consensus 273 ~~~~~~v~~-~~~~~~~l~~~~----d~~i~iwd~~~~~~--~~~~~~~~-~~~i~~l~~s~~~~~l~tg~~dg~i~iwd 344 (520)
..+...+.. +.+++.+++.+. ++.|.+||+.++.. ...+...+ ...+..++++ ++.++++...|+..++|.
T Consensus 268 ~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~ 346 (695)
T 2bkl_A 268 VKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRV 346 (695)
T ss_dssp EECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred ecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence 444433333 346777444443 36799999987753 23333223 4567888888 677888899999988887
Q ss_pred cccCccccceeeeeeecCC-cCCEEEEEecC--CEEE-EEe---CCCcEEEEeCCcc
Q 009993 345 IINDCTEANVLLVATWIPH-TGPVNSLAFEF--PWLV-SAA---GDGKLSLIDVRKL 394 (520)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~--~~l~-s~s---~dg~i~vwd~~~~ 394 (520)
+.... .....+..+ .+.+..+++++ +.++ +.+ ..++|++||+.++
T Consensus 347 ~~~~g-----~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 347 ATLKG-----KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp EETTC-----CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred EeCCC-----CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 66321 223334433 55677777765 4444 332 3478999999764
No 180
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.50 E-value=7.3e-11 Score=119.32 Aligned_cols=313 Identities=12% Similarity=0.033 Sum_probs=189.2
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCC-CceEEEEecCCCEEEEEeCCCcEEEEEcc--cCcceeeeccCCccc
Q 009993 151 LASAKLLFTSGYDSIVRMWHLEDGFSIASSKPL-GCTIRAVAADKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQ 227 (520)
Q Consensus 151 ~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~l~sg~~dg~i~vwd~~--~~~~~~~~~~~~~~~ 227 (520)
+|.+.++++...+++|.++|..+++.+.++... ......++++++++++++.|+.|.+||+. +..
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~------------ 231 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT------------ 231 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC------------
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc------------
Confidence 344567778888999999999999998887643 33355678999999999999999999985 331
Q ss_pred cceEEeccCCCCeEEEEEc------CCEEEEEe-cCCeEEEEECCCCcEEEEeeec------------cCEEEEe--eCC
Q 009993 228 NTQFRLWEHEGPITSLALD------LTRIYSGS-WDMTVRVWDRALLKCLKVLRHS------------DWVYGLA--PHD 286 (520)
Q Consensus 228 ~~~~~~~~h~~~v~~l~~~------~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~------------~~v~~~~--~~~ 286 (520)
....+.. ......++++ +++++++. .+++|.++|..+.+.+..+... ..+..+. +++
T Consensus 232 -~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~ 309 (567)
T 1qks_A 232 -TVAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR 309 (567)
T ss_dssp -EEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS
T ss_pred -EeEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCC
Confidence 2233332 2234566764 56776665 4599999999999998887521 1455554 444
Q ss_pred CEEEE-Ec-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEe-CCCeEEEEEcccCccccceeeeeeecCC
Q 009993 287 TTVAS-TS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG-EDGAIHMYEIINDCTEANVLLVATWIPH 363 (520)
Q Consensus 287 ~~l~~-~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~h 363 (520)
..++. .. +|.|.++|......+.............+.|+|+|++++++. .++.|.++|+.++...... .+..-..|
T Consensus 310 ~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i-~vgg~~Ph 388 (567)
T 1qks_A 310 PEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE-DTGGQTPH 388 (567)
T ss_dssp SEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE-ECSSSSBC
T ss_pred CEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE-eccCcCCC
Confidence 44444 44 699999999876433322212344567889999999887665 5789999999988321111 11001234
Q ss_pred cCCEEEEEecC--C-EEEEEe-CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccC--cceeeEEEEecCCEEE
Q 009993 364 TGPVNSLAFEF--P-WLVSAA-GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG--FECNLLSVDIGADRIV 437 (520)
Q Consensus 364 ~~~v~~l~~~~--~-~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~ 437 (520)
.+.-..+ ++| . ..+++. .++.|.++|..+...... .-+ ..+.+.. ...--...++++.++.
T Consensus 389 pg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~--~~k----------vv~~i~~~g~g~~~i~~~p~~~~l~ 455 (567)
T 1qks_A 389 PGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDN--AWK----------ILDSFPALGGGSLFIKTHPNSQYLY 455 (567)
T ss_dssp CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTT--BTS----------EEEEEECSCSCCCCEECCTTCSEEE
T ss_pred Cccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccc--cCE----------EEEEEecCCCCCEEEEeCCCCCeEE
Confidence 4322222 354 2 444543 568999999876311100 000 0111111 1112234567777666
Q ss_pred EecC-------CCeEEEEeCCch-----HhH-HHHh-hhhcccccchhhhhccceeeeccCCCcccccccc
Q 009993 438 CGGE-------EGIVRIWNFSQA-----FEI-ERRA-RALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVA 494 (520)
Q Consensus 438 sg~~-------Dg~v~iwd~~~~-----~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~ 494 (520)
+... ..+|.++|+.+. ... +... ....++ . ..-+++.+++|+|+|+.+-.+...
T Consensus 456 v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~G~~~~~s~~~ 523 (567)
T 1qks_A 456 VDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGI--T-EGQPRVVQGEFNKDGTEVWFSVWN 523 (567)
T ss_dssp EECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTC--C-SSCCEEEEEEECTTSSEEEEEEEC
T ss_pred EecCCCCCcccCceEEEEECCcccccccCCCcEEecccccccc--C-CCCcceEeeeECCCCCEEEEEeec
Confidence 5442 358999999865 110 0000 000000 0 012467899999999998776543
No 181
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.50 E-value=1.9e-11 Score=112.40 Aligned_cols=202 Identities=12% Similarity=-0.001 Sum_probs=146.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeCCCC---ceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccc
Q 009993 153 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG---CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNT 229 (520)
Q Consensus 153 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 229 (520)
.+++|++++.|+.|.+||.++|+.+.++..+. ..-..+.++|++++ +.++.|..||. +++ .
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~-------------~ 67 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGR-------------E 67 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC-------------E
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC-------------E
Confidence 46789999999999999999999999987654 33445669999888 45778999997 553 2
Q ss_pred eEEeccC-CCCeEEEEE--cCCEEEEEec-CCeEEEEECCCCcEEEEeeecc-------CE--EEEeeCCCEEEEEc-CC
Q 009993 230 QFRLWEH-EGPITSLAL--DLTRIYSGSW-DMTVRVWDRALLKCLKVLRHSD-------WV--YGLAPHDTTVASTS-GS 295 (520)
Q Consensus 230 ~~~~~~h-~~~v~~l~~--~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~-------~v--~~~~~~~~~l~~~~-d~ 295 (520)
+..+..+ ...+.++.+ +++.+++.+. ++.|..+|. +++.+..+.... .. ..+.++++++++.. ++
T Consensus 68 ~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~ 146 (276)
T 3no2_A 68 LWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATS 146 (276)
T ss_dssp EEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTT
T ss_pred EEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCC
Confidence 2233322 235667776 8889998887 788888886 677777665211 11 23457899999988 89
Q ss_pred eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCc------CCEEE
Q 009993 296 DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT------GPVNS 369 (520)
Q Consensus 296 ~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~------~~v~~ 369 (520)
.|..||.. |+.+..+.. ...+.++.+.++|+.+++++.++.|..+|..++ +.+.++..+. ..+..
T Consensus 147 ~v~~~d~~-G~~~w~~~~--~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG------~~~w~~~~~~~~~~~l~~~~~ 217 (276)
T 3no2_A 147 EVREIAPN-GQLLNSVKL--SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESN------RIVRRVNANDIEGVQLFFVAQ 217 (276)
T ss_dssp EEEEECTT-SCEEEEEEC--SSCCCEEEECTTSCEEEECBTTSEEEEECTTTC------CEEEEEEGGGSBSCCCSEEEE
T ss_pred EEEEECCC-CCEEEEEEC--CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCC------cEEEEecCCCCCCcccccccc
Confidence 99999998 999988863 245667788899999999998999999999988 4555543321 22566
Q ss_pred EEec--CCEEEEE
Q 009993 370 LAFE--FPWLVSA 380 (520)
Q Consensus 370 l~~~--~~~l~s~ 380 (520)
+... +..+++.
T Consensus 218 ~~~~~~G~i~v~~ 230 (276)
T 3no2_A 218 LFPLQNGGLYICN 230 (276)
T ss_dssp EEECTTSCEEEEE
T ss_pred ceEcCCCCEEEEe
Confidence 6653 3455554
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.50 E-value=8.4e-12 Score=116.45 Aligned_cols=233 Identities=12% Similarity=0.013 Sum_probs=155.7
Q ss_pred hhhccccccEEEEEEccCCC-EEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEE--EecCCCEEEEEeCCCcEEEEEcc
Q 009993 136 DVLYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRA--VAADKKLLVAGGTDGFIHCWRAV 212 (520)
Q Consensus 136 ~~l~~h~~~V~~l~~~~~~~-~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~vwd~~ 212 (520)
..+..+.....+++|+|+|+ +++++..++.|..|+..++ ...+..+...+.+ +.++++++++...++.|.+||..
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP 98 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence 34445666778999999998 7888888999999999887 4555444444444 45888888777777899999987
Q ss_pred cCcceeeeccCCccccceEEecc-CCCCeEEEEE--cCCEEEE----Eec-------------CCeEEEEECCCCcEEEE
Q 009993 213 EVLPHLFDISGSEKQNTQFRLWE-HEGPITSLAL--DLTRIYS----GSW-------------DMTVRVWDRALLKCLKV 272 (520)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~--~~~~l~s----~s~-------------dg~v~iwd~~~~~~~~~ 272 (520)
++....+. ....+ ....+.++++ +++.+++ |+. .+.|..++.. ++....
T Consensus 99 ~g~~~~~~----------~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (296)
T 3e5z_A 99 GGEWESIA----------DSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAP 167 (296)
T ss_dssp TCCEEEEE----------CEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEE
T ss_pred CCcEEEEe----------eccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEe
Confidence 66422110 00011 1234567778 5666776 331 3466666665 544433
Q ss_pred eeeccCEEEEe--eCCCEEEEEc-CCeEEEEECC-CCee---eEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEc
Q 009993 273 LRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTN-SGCL---LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI 345 (520)
Q Consensus 273 ~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~-~~~~---~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~ 345 (520)
..+......+. ++++.+++.. ++.|.+||+. ++.. ...+ ..+...+..++++++|+++++. ++.|.+||.
T Consensus 168 ~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 168 IRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp ECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred ecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence 34444555555 8898886666 7899999987 4544 3334 3455667789999999876666 888999998
Q ss_pred ccCccccceeeeeeecCCcCCEEEEEec-C--CEEEEEeCCCcEEEEeCCc
Q 009993 346 INDCTEANVLLVATWIPHTGPVNSLAFE-F--PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 346 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~--~~l~s~s~dg~i~vwd~~~ 393 (520)
. + ..+..+..+.. +++++|. + +.|++++.++ +.-++..+
T Consensus 245 ~-g------~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 245 D-G------DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp T-S------CEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred C-C------CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 6 4 34555666666 8999993 4 4788888764 44455544
No 183
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.49 E-value=2.3e-12 Score=125.50 Aligned_cols=283 Identities=9% Similarity=-0.003 Sum_probs=167.9
Q ss_pred EEEECCCCcEEEEeCCCCce-------EEEEecCCCEEEEEeCC---CcEEEEEcccCcceeeeccCCccccceEEeccC
Q 009993 167 RMWHLEDGFSIASSKPLGCT-------IRAVAADKKLLVAGGTD---GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH 236 (520)
Q Consensus 167 ~vwd~~~~~~~~~~~~~~~~-------v~~~~~~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h 236 (520)
...|..++..+..+..+... -.+++|+|+.|+..... ..|.+||+.++.. ..+..+
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~--------------~~l~~~ 78 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA--------------VQLTEG 78 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE--------------EECCCS
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE--------------EEeecC
Confidence 34477788777776554322 23567999998777543 3678888776531 122222
Q ss_pred CCC-eEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEE---------------------EeeCCCEEEE
Q 009993 237 EGP-ITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYG---------------------LAPHDTTVAS 291 (520)
Q Consensus 237 ~~~-v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~---------------------~~~~~~~l~~ 291 (520)
... ...+.| ++++|+.++.++.|++||+.+++...... +...... +.|+++.++.
T Consensus 79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~ 158 (396)
T 3c5m_A 79 KGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKF 158 (396)
T ss_dssp SCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHH
T ss_pred CCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceee
Confidence 222 222455 78899999999999999999887665554 2222111 1244444433
Q ss_pred E-----c-CCeEEEEECCCCeeeEEeecccccceEEEEecC-CCCEEEEEeCC------CeEEEEEcccCccccceeeee
Q 009993 292 T-----S-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH-TGDFLFTGGED------GAIHMYEIINDCTEANVLLVA 358 (520)
Q Consensus 292 ~-----~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~tg~~d------g~i~iwd~~~~~~~~~~~~~~ 358 (520)
. . +..|++||+.+++..... .+...+..+.|+| +++.|+..+.+ ..|.+||+..+. ..
T Consensus 159 ~~~~~~~~~~~l~~~d~~~g~~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-------~~ 229 (396)
T 3c5m_A 159 AEFYHTNPTCRLIKVDIETGELEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN-------VR 229 (396)
T ss_dssp HHHHHTCCCEEEEEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC-------CE
T ss_pred eeeccCCCcceEEEEECCCCcEEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc-------ee
Confidence 2 2 567999999988765554 3667789999999 78877766543 358888876552 12
Q ss_pred eecCC--cCCEEEEEecC--CEEEEEeCC-----CcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEE
Q 009993 359 TWIPH--TGPVNSLAFEF--PWLVSAAGD-----GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSV 429 (520)
Q Consensus 359 ~~~~h--~~~v~~l~~~~--~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 429 (520)
.+..+ ...+..+.|+| ++|+.++.+ +.|++||+.++... .+.. ..++ . ..+
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~----------~l~~-------~~~~--~-~~~ 289 (396)
T 3c5m_A 230 KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENE----------EVMV-------MPPC--S-HLM 289 (396)
T ss_dssp ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEE----------EEEE-------CCSE--E-EEE
T ss_pred EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeE----------Eeee-------CCCC--C-CCc
Confidence 22222 23578889976 566666543 44999999764211 0100 1111 1 566
Q ss_pred Ee-cCCEEEEec----------------CCCeEEEEeCCchHhHHHHhhhhccccc-chhhhhccceeeeccCCCccccc
Q 009993 430 DI-GADRIVCGG----------------EEGIVRIWNFSQAFEIERRARALRGIRL-ENRMRRRKLQTEMSSKGGRTDQC 491 (520)
Q Consensus 430 ~~-~~~~l~sg~----------------~Dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~g~~~~~~ 491 (520)
++ +++++++++ .++.|++||+.++... ........... ..........+.|+|||++++.+
T Consensus 290 s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 368 (396)
T 3c5m_A 290 SNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFT 368 (396)
T ss_dssp ECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEE
T ss_pred cCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEE
Confidence 77 788777654 3578999999876421 10000000000 00001123557899999998877
Q ss_pred cc
Q 009993 492 SV 493 (520)
Q Consensus 492 s~ 493 (520)
+.
T Consensus 369 s~ 370 (396)
T 3c5m_A 369 SD 370 (396)
T ss_dssp EC
T ss_pred ec
Confidence 64
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.48 E-value=1.2e-11 Score=117.40 Aligned_cols=231 Identities=11% Similarity=0.075 Sum_probs=153.8
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEE--EEecCCCEEEEEeCCCcEEEEEcccCcceeee
Q 009993 143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR--AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD 220 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 220 (520)
..|.++.|++++..++..+.++.++.| .++....+..+..... ++++++++++++..++.|.+||..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~---- 78 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI---- 78 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE----
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE----
Confidence 456778899888877777888999999 3455555554443333 4558898888888899999999876531
Q ss_pred ccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecC----CeEEEEECCCCcEEEEee---eccCEEEEe--eCCCEE
Q 009993 221 ISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD----MTVRVWDRALLKCLKVLR---HSDWVYGLA--PHDTTV 289 (520)
Q Consensus 221 ~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~---~~~~v~~~~--~~~~~l 289 (520)
......+...+.++++ +++.+++...+ +.|.+||..++.....+. ....+.++. ++++++
T Consensus 79 ---------~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~ 149 (333)
T 2dg1_A 79 ---------KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFY 149 (333)
T ss_dssp ---------EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEE
T ss_pred ---------EEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEE
Confidence 1111245678999999 55666666655 689999998877653332 334566665 778887
Q ss_pred EEEcC-------CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEE-EEeCCCeEEEEEcccC-ccccce--eeee
Q 009993 290 ASTSG-------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLF-TGGEDGAIHMYEIIND-CTEANV--LLVA 358 (520)
Q Consensus 290 ~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~-tg~~dg~i~iwd~~~~-~~~~~~--~~~~ 358 (520)
++... +.|..+|..+++..... .....+..++|+|+++.++ +.+.++.|.+||+.+. ...... ....
T Consensus 150 v~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~ 227 (333)
T 2dg1_A 150 FTDFRGYSTNPLGGVYYVSPDFRTVTPII--QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY 227 (333)
T ss_dssp EEECCCBTTBCCEEEEEECTTSCCEEEEE--EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE
T ss_pred EEeccccccCCCceEEEEeCCCCEEEEee--cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEE
Confidence 77653 56777777665543332 2345678999999998654 4556789999999642 111100 0111
Q ss_pred eecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCC
Q 009993 359 TWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR 392 (520)
Q Consensus 359 ~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~ 392 (520)
.+.++ ..+..+++++ +++++...++.|.+||..
T Consensus 228 ~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 228 YFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp ECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred ecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 22222 4678899975 566666678899999984
No 185
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.48 E-value=4e-12 Score=132.85 Aligned_cols=226 Identities=11% Similarity=0.020 Sum_probs=149.3
Q ss_pred EEEEc--cCCCE-EEEEeC-CCeEEEEECC--C-CcEEEEeCC-----CCceE--EEEecCCCEEEEEeCC---------
Q 009993 147 TVFVL--ASAKL-LFTSGY-DSIVRMWHLE--D-GFSIASSKP-----LGCTI--RAVAADKKLLVAGGTD--------- 203 (520)
Q Consensus 147 ~l~~~--~~~~~-l~sgs~-dg~v~vwd~~--~-~~~~~~~~~-----~~~~v--~~~~~~~~~l~sg~~d--------- 203 (520)
...|+ |||+. |+.++. +..|.+|++. . +. ...+.. |...+ .+++|||+.|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~ 159 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV 159 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence 55565 99998 776554 5667777765 2 43 344444 44444 4567999999998877
Q ss_pred -CcEEEEEccc------CcceeeeccCCccccceEEec-cCCCCeEEEEE--cCCEEEEEecCC--------eEEEEECC
Q 009993 204 -GFIHCWRAVE------VLPHLFDISGSEKQNTQFRLW-EHEGPITSLAL--DLTRIYSGSWDM--------TVRVWDRA 265 (520)
Q Consensus 204 -g~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~s~s~dg--------~v~iwd~~ 265 (520)
..|.+||+.+ +. ...+. .+...+..++| ||++|+.++.++ .|++||+.
T Consensus 160 ~~~i~~~~~~~~~~~~~~~--------------~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~ 225 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSA--------------VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVT 225 (662)
T ss_dssp EEEEEEEETTSTTTTCGGG--------------SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEEC
T ss_pred eeEEEEEECCCCccccCCc--------------eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEEC
Confidence 5899999876 32 22333 45566777778 888998887653 79999998
Q ss_pred -CC---cEEEEee-eccCEEEEe--eCCCEEEEEc-CC--eEEEEECCCCeeeEEeecccccc--------eEEEEecCC
Q 009993 266 -LL---KCLKVLR-HSDWVYGLA--PHDTTVASTS-GS--DVYIWDTNSGCLLTVVNGAHVGN--------TKSLARSHT 327 (520)
Q Consensus 266 -~~---~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~--------i~~l~~s~~ 327 (520)
++ +...... +...+..+. +++++++++. ++ .|.+||+.+++...... .+... +..++|+|+
T Consensus 226 ~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~-~~~~~~~p~w~~~~~~~~~~~~ 304 (662)
T 3azo_A 226 EDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR-REEEFAGPLWTPGMRWFAPLAN 304 (662)
T ss_dssp TTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC-CSSBSSCCCCSTTCCSEEECTT
T ss_pred CCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc-ccccccCccccccCceEeEeCC
Confidence 56 3433333 356777665 8899777777 66 67788877776543332 22222 567899999
Q ss_pred CCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEE-EecCCE--EEEEeCCCc--EEEEeCCcc
Q 009993 328 GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL-AFEFPW--LVSAAGDGK--LSLIDVRKL 394 (520)
Q Consensus 328 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l-~~~~~~--l~s~s~dg~--i~vwd~~~~ 394 (520)
+.++++++. +.+++|.+.... ..+..+..|...+..+ +++++. +++++.+.. |.+||+.++
T Consensus 305 ~~~~~~~~~-~~~~l~~~d~~~-----~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 305 GLIAVVHGK-GAAVLGILDPES-----GELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp SCEEEEEBS-SSCEEEEEETTT-----TEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred CEEEEEEEc-CccEEEEEECCC-----CcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 999999998 999999554321 1245666777788888 787753 334455544 555565543
No 186
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.48 E-value=4.4e-11 Score=113.58 Aligned_cols=238 Identities=9% Similarity=-0.012 Sum_probs=153.6
Q ss_pred CcccHH-HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEE--ecCCCEEEEEeCC
Q 009993 127 DDKSWK-ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AADKKLLVAGGTD 203 (520)
Q Consensus 127 ~~~~W~-~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~d 203 (520)
..+.|. .....+.++...+.+++|+++|++++++..++.|.+||..+++.......+...+.++ +++++++++...+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~ 107 (333)
T 2dg1_A 28 ELQTITAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGD 107 (333)
T ss_dssp GSCEEECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTT
T ss_pred cCcccccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCC
Confidence 334553 2234566777788999999999988888899999999998887655443444445554 4788877777666
Q ss_pred ----CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec------CCeEEEEECCCCcEEE
Q 009993 204 ----GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW------DMTVRVWDRALLKCLK 271 (520)
Q Consensus 204 ----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~------dg~v~iwd~~~~~~~~ 271 (520)
+.|.+||..++....+ .....+...+.++++ +++.+++... .+.|..+|..+++...
T Consensus 108 ~~~~~~i~~~d~~~~~~~~~-----------~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~ 176 (333)
T 2dg1_A 108 FKSTGGIFAATENGDNLQDI-----------IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP 176 (333)
T ss_dssp SSSCCEEEEECTTSCSCEEE-----------ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE
T ss_pred CCCCceEEEEeCCCCEEEEE-----------EccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE
Confidence 6899999876532100 000123457888998 4555555443 3567777766655544
Q ss_pred EeeeccCEEEEe--eCCCEEEEE-c-CCeEEEEECCC-CeeeEEe------e-cccccceEEEEecCCCCEEEEEeCCCe
Q 009993 272 VLRHSDWVYGLA--PHDTTVAST-S-GSDVYIWDTNS-GCLLTVV------N-GAHVGNTKSLARSHTGDFLFTGGEDGA 339 (520)
Q Consensus 272 ~~~~~~~v~~~~--~~~~~l~~~-~-d~~i~iwd~~~-~~~~~~~------~-~~~~~~i~~l~~s~~~~~l~tg~~dg~ 339 (520)
.......+..+. ++++.++.+ . ++.|.+||+.+ +.....+ . .++ ..+..++++++|+++++...++.
T Consensus 177 ~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~ 255 (333)
T 2dg1_A 177 IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGR 255 (333)
T ss_dssp EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTE
T ss_pred eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCE
Confidence 333334455554 788755544 4 78999999964 3322211 0 111 36788999999998888888899
Q ss_pred EEEEEcccCccccceeeeeeecCCc------CCEEEEEecC--CEEEEEeCC
Q 009993 340 IHMYEIINDCTEANVLLVATWIPHT------GPVNSLAFEF--PWLVSAAGD 383 (520)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~h~------~~v~~l~~~~--~~l~s~s~d 383 (520)
|.+||.. + ..+..+..+. ..+.+++|++ ..|+.++.+
T Consensus 256 v~~~d~~-g------~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 256 VLVFNKR-G------YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEECTT-S------CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEEECCC-C------CEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 9999984 3 2233333322 2678899965 466655554
No 187
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.47 E-value=4.4e-11 Score=115.74 Aligned_cols=265 Identities=9% Similarity=0.034 Sum_probs=173.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeCCC----------CceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeecc
Q 009993 153 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPL----------GCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS 222 (520)
Q Consensus 153 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~----------~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 222 (520)
.+..++.++.++.|..+|..+|+.+...... .........++..+++++.++.|..+|..++... +
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~-W--- 127 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVA-W--- 127 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEE-E---
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEE-E---
Confidence 3667888888999999999999988766542 1222334456778889999999999999887521 1
Q ss_pred CCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEE------EEeeCCCEEEEEc-CC
Q 009993 223 GSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVY------GLAPHDTTVASTS-GS 295 (520)
Q Consensus 223 ~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~------~~~~~~~~l~~~~-d~ 295 (520)
...............++.++.++.++.|..+|..+++.+........+. .....+..++++. ++
T Consensus 128 ---------~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g 198 (376)
T 3q7m_A 128 ---------QTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNG 198 (376)
T ss_dssp ---------EEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTT
T ss_pred ---------EEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCC
Confidence 1111111111223456788899999999999999999888776443332 1122345566666 89
Q ss_pred eEEEEECCCCeeeEEeecccccc---eEE---EEecC--CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCE
Q 009993 296 DVYIWDTNSGCLLTVVNGAHVGN---TKS---LARSH--TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPV 367 (520)
Q Consensus 296 ~i~iwd~~~~~~~~~~~~~~~~~---i~~---l~~s~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v 367 (520)
.+..+|..+++.+.......... +.. +...| .+..++.++.++.+..+|..++ +.+.... ....
T Consensus 199 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG------~~~w~~~--~~~~ 270 (376)
T 3q7m_A 199 RVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG------QIMWKRE--LGSV 270 (376)
T ss_dssp EEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC------CEEEEEC--CCCE
T ss_pred EEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC------cEEeecc--CCCC
Confidence 99999999999887765321100 000 11111 3567888889999999999988 3333332 2345
Q ss_pred EEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEE
Q 009993 368 NSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRI 447 (520)
Q Consensus 368 ~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~i 447 (520)
..+..+...++.++.++.|..+|..++...... .. ... .........+..|+.++.+|.|.+
T Consensus 271 ~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~------------~~----~~~--~~~~~~~~~~~~l~v~~~~g~l~~ 332 (376)
T 3q7m_A 271 NDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQ------------SD----LLH--RLLTSPVLYNGNLVVGDSEGYLHW 332 (376)
T ss_dssp EEEEEETTEEEEEETTCCEEEEETTTCCEEEEE------------CT----TTT--SCCCCCEEETTEEEEECTTSEEEE
T ss_pred CCceEECCEEEEEcCCCeEEEEECCCCcEEEee------------cc----cCC--CcccCCEEECCEEEEEeCCCeEEE
Confidence 666777889999999999999999875332110 00 000 001111223678889999999999
Q ss_pred EeCCchHhH
Q 009993 448 WNFSQAFEI 456 (520)
Q Consensus 448 wd~~~~~~~ 456 (520)
+|..+++.+
T Consensus 333 ~d~~tG~~~ 341 (376)
T 3q7m_A 333 INVEDGRFV 341 (376)
T ss_dssp EETTTCCEE
T ss_pred EECCCCcEE
Confidence 999987643
No 188
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.46 E-value=1.3e-11 Score=130.66 Aligned_cols=244 Identities=9% Similarity=0.007 Sum_probs=147.4
Q ss_pred CCCcccHH----Hhhhhhcccccc-----EEEEEEccCCCEEEEEeCC---------CeEEEEECCCCcEEEEeCCCCce
Q 009993 125 FSDDKSWK----ELIDVLYGHTEA-----VLTVFVLASAKLLFTSGYD---------SIVRMWHLEDGFSIASSKPLGCT 186 (520)
Q Consensus 125 ~~~~~~W~----~~~~~l~~h~~~-----V~~l~~~~~~~~l~sgs~d---------g~v~vwd~~~~~~~~~~~~~~~~ 186 (520)
+.....|+ +....+.+|... ...++|||||++|+.++.+ +.+.+||+.+++... +..+...
T Consensus 35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~ 113 (740)
T 4a5s_A 35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNN 113 (740)
T ss_dssp TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTT
T ss_pred CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCc
Confidence 34456665 223445566532 3447899999999999876 566799999987543 4444443
Q ss_pred --EEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCC---------CCeEEEEE--cCCEEEEE
Q 009993 187 --IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE---------GPITSLAL--DLTRIYSG 253 (520)
Q Consensus 187 --v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~l~~--~~~~l~s~ 253 (520)
-.+++|||+.|+.+. |+.|++|++.++........+.. ...+.++. +....+.| ||++|+.+
T Consensus 114 ~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~----~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~ 188 (740)
T 4a5s_A 114 TQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKE----DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA 188 (740)
T ss_dssp EEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBT----TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred ceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCc----cceecCcccccccchhcCCCcceEECCCCCEEEEE
Confidence 346679999999885 68999999987753322111110 01112222 12234667 77888776
Q ss_pred ecCC------------------------------------eEEEEECCC---C---cEEEEee------eccCEEEEe--
Q 009993 254 SWDM------------------------------------TVRVWDRAL---L---KCLKVLR------HSDWVYGLA-- 283 (520)
Q Consensus 254 s~dg------------------------------------~v~iwd~~~---~---~~~~~~~------~~~~v~~~~-- 283 (520)
+.|. +|++||+.+ + +...... +...+..++
T Consensus 189 ~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ws 268 (740)
T 4a5s_A 189 QFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWA 268 (740)
T ss_dssp EEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEE
T ss_pred EEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEe
Confidence 5332 588899988 7 3333222 444566554
Q ss_pred eCCCEEEEEc-C----CeEEEEECCCCe----e---eEEeecccccceE-----EEEecCCCCEEE-EEeC-CC--eEEE
Q 009993 284 PHDTTVASTS-G----SDVYIWDTNSGC----L---LTVVNGAHVGNTK-----SLARSHTGDFLF-TGGE-DG--AIHM 342 (520)
Q Consensus 284 ~~~~~l~~~~-d----~~i~iwd~~~~~----~---~~~~~~~~~~~i~-----~l~~s~~~~~l~-tg~~-dg--~i~i 342 (520)
|+++.++... . ..|.+||+.+++ + ...+..+|...+. ...|+|||+.++ ..+. +| .|++
T Consensus 269 pdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~ 348 (740)
T 4a5s_A 269 TQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICY 348 (740)
T ss_dssp ETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEE
T ss_pred CCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEE
Confidence 8998766553 2 369999999887 2 1222223554443 688999999877 5554 44 5778
Q ss_pred EEcccCccccceeeeeeecCCcCCEEEEE-ecCCEEEEEe
Q 009993 343 YEIINDCTEANVLLVATWIPHTGPVNSLA-FEFPWLVSAA 381 (520)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~-~~~~~l~s~s 381 (520)
||+.++ ... .+......|..+. ++++.|+..+
T Consensus 349 ~~~~~~------~~~-~lT~g~~~v~~~~~~d~~~i~f~~ 381 (740)
T 4a5s_A 349 FQIDKK------DCT-FITKGTWEVIGIEALTSDYLYYIS 381 (740)
T ss_dssp EETTCS------SCE-ESCCSSSCEEEEEEECSSEEEEEE
T ss_pred EECCCC------ceE-ecccCCEEEEEEEEEeCCEEEEEE
Confidence 888766 222 2333344555544 6766554443
No 189
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.45 E-value=1.3e-10 Score=110.20 Aligned_cols=229 Identities=13% Similarity=0.037 Sum_probs=153.1
Q ss_pred EEEecCCCEEEEEeCC------------------------CcEEEEEcccCcceeeeccCCccccceEEe-ccCCCCeEE
Q 009993 188 RAVAADKKLLVAGGTD------------------------GFIHCWRAVEVLPHLFDISGSEKQNTQFRL-WEHEGPITS 242 (520)
Q Consensus 188 ~~~~~~~~~l~sg~~d------------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~ 242 (520)
.+++++|+++++...+ +.|.+||..++.. .... .++......
T Consensus 29 va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~-------------~~~~~~~~~~~p~g 95 (329)
T 3fvz_A 29 VALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI-------------LQSSGKNLFYLPHG 95 (329)
T ss_dssp EEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE-------------EEEECTTTCSSEEE
T ss_pred EEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE-------------EeccCCCccCCceE
Confidence 3455788888777766 4789998876631 1112 234457888
Q ss_pred EEE--cCCEEEEEecCCeEEEEECCCCc-EEEEee----------eccCEEEEe--e-CCCEEEEEc--CCeEEEEECCC
Q 009993 243 LAL--DLTRIYSGSWDMTVRVWDRALLK-CLKVLR----------HSDWVYGLA--P-HDTTVASTS--GSDVYIWDTNS 304 (520)
Q Consensus 243 l~~--~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~----------~~~~v~~~~--~-~~~~l~~~~--d~~i~iwd~~~ 304 (520)
+++ +++.+++...++.|++||..... .+..+. +......++ + ++.++++.+ ++.|++|| .+
T Consensus 96 ia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~ 174 (329)
T 3fvz_A 96 LSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PS 174 (329)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TT
T ss_pred EEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CC
Confidence 999 56778888888999999986542 444442 122456665 6 678888874 78999999 56
Q ss_pred CeeeEEeec---------ccccceEEEEecCC-CCEEEEEeCCCeEEEEEcccCccccceeeeeee--cCCcCCEEEEEe
Q 009993 305 GCLLTVVNG---------AHVGNTKSLARSHT-GDFLFTGGEDGAIHMYEIINDCTEANVLLVATW--IPHTGPVNSLAF 372 (520)
Q Consensus 305 ~~~~~~~~~---------~~~~~i~~l~~s~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~--~~h~~~v~~l~~ 372 (520)
+..+..+.. ++......++++|+ +.++++...++.|++||..++ ..+..+ ..+...+.++++
T Consensus 175 g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G------~~~~~~~~~~~~~~~~~~~~ 248 (329)
T 3fvz_A 175 GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK------EFVREIKHASFGRNVFAISY 248 (329)
T ss_dssp SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC------CEEEEECCTTTTTCEEEEEE
T ss_pred CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC------cEEEEEeccccCCCcceeee
Confidence 666666531 12334889999998 777777888999999999866 444444 345677889999
Q ss_pred cCCEEEEEe--------CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceee--EEEEecCCEEEEecCC
Q 009993 373 EFPWLVSAA--------GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNL--LSVDIGADRIVCGGEE 442 (520)
Q Consensus 373 ~~~~l~s~s--------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sg~~D 442 (520)
+|..++... .+..|++||..++..... +.. ..++.... .++++++.++++...+
T Consensus 249 ~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~------------~~~----~~~~~~~p~~ia~~~dG~lyvad~~~ 312 (329)
T 3fvz_A 249 IPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV------------FKP----VRKHFDMPHDIVASEDGTVYIGDAHT 312 (329)
T ss_dssp ETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEE------------ECC----SSSCCSSEEEEEECTTSEEEEEESSS
T ss_pred cCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE------------EcC----CCCccCCeeEEEECCCCCEEEEECCC
Confidence 886554443 245899999876422211 000 01222233 3445555588888899
Q ss_pred CeEEEEeCCc
Q 009993 443 GIVRIWNFSQ 452 (520)
Q Consensus 443 g~v~iwd~~~ 452 (520)
+.|++|++..
T Consensus 313 ~~I~~~~~~~ 322 (329)
T 3fvz_A 313 NTVWKFTLTE 322 (329)
T ss_dssp CCEEEEEEEE
T ss_pred CEEEEEeCCc
Confidence 9999999864
No 190
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.45 E-value=4.9e-10 Score=113.28 Aligned_cols=247 Identities=16% Similarity=0.153 Sum_probs=157.7
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEECC--CCcEEEEeCCCC-ceEEEEe----cCCCEEEEEeC-CCcEEEEEcccCc
Q 009993 144 AVLTVFVLASAKLLFTSGYDSIVRMWHLE--DGFSIASSKPLG-CTIRAVA----ADKKLLVAGGT-DGFIHCWRAVEVL 215 (520)
Q Consensus 144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~-~~v~~~~----~~~~~l~sg~~-dg~i~vwd~~~~~ 215 (520)
.+..+.|+|||+++++++.|+.|.+||+. +++.+.++.... ..-.+++ |+|++++++.. ++.|.++|..+.+
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~ 277 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE 277 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc
Confidence 56789999999999999999999999995 888887776433 3345677 59998887766 5999999987754
Q ss_pred ceeeeccCCccccceEEeccC-CCCeEEEEE--c-CCEEEEEecCCeEEEEECCCCcEEEE--eeeccCEE--EEeeCCC
Q 009993 216 PHLFDISGSEKQNTQFRLWEH-EGPITSLAL--D-LTRIYSGSWDMTVRVWDRALLKCLKV--LRHSDWVY--GLAPHDT 287 (520)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~--~-~~~l~s~s~dg~v~iwd~~~~~~~~~--~~~~~~v~--~~~~~~~ 287 (520)
....-......... ...| ...+..+.. + +..+++...+|.|.++|..+.+.+.. +....... .+.++++
T Consensus 278 ~~~~i~~~~~~~~~---~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr 354 (567)
T 1qks_A 278 PKKIQSTRGMTYDE---QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHR 354 (567)
T ss_dssp EEEEEECCEECTTT---CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSC
T ss_pred EEEEEecccccccc---ccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCC
Confidence 21100000000000 0001 124566665 2 34566667789999999887654332 22333333 3558999
Q ss_pred EEEEEc--CCeEEEEECCCCeeeEEeec----ccccceEEEEecCCCCEEE-EEe-CCCeEEEEEcccCcc-ccceeeee
Q 009993 288 TVASTS--GSDVYIWDTNSGCLLTVVNG----AHVGNTKSLARSHTGDFLF-TGG-EDGAIHMYEIINDCT-EANVLLVA 358 (520)
Q Consensus 288 ~l~~~~--d~~i~iwd~~~~~~~~~~~~----~~~~~i~~l~~s~~~~~l~-tg~-~dg~i~iwd~~~~~~-~~~~~~~~ 358 (520)
+++++. ++.|.++|+.+++.+..+.. .|.+.-..+ ++|++..+. ++. .++.|.++|...... ....+.+.
T Consensus 355 ~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~ 433 (567)
T 1qks_A 355 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILD 433 (567)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEE
Confidence 887766 68999999999988777654 243222222 678755544 443 468999999987321 11124556
Q ss_pred eecCCcCCEEEEEecC--CEEEEEeC-------CCcEEEEeCCcc
Q 009993 359 TWIPHTGPVNSLAFEF--PWLVSAAG-------DGKLSLIDVRKL 394 (520)
Q Consensus 359 ~~~~h~~~v~~l~~~~--~~l~s~s~-------dg~i~vwd~~~~ 394 (520)
++......-..+..+| ++|.+... .++|.|+|+.+.
T Consensus 434 ~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 434 SFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 6554433333455665 57776653 359999999875
No 191
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.44 E-value=4.1e-11 Score=110.02 Aligned_cols=229 Identities=9% Similarity=-0.063 Sum_probs=151.8
Q ss_pred cEEEEEEccCCCEEE-EEeCCCeEEEEECCCCcEEEEeCCC--CceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeee
Q 009993 144 AVLTVFVLASAKLLF-TSGYDSIVRMWHLEDGFSIASSKPL--GCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD 220 (520)
Q Consensus 144 ~V~~l~~~~~~~~l~-sgs~dg~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 220 (520)
...+++++++|++++ +.+.++.|.+|+..++........+ ...-.++.++++++++.. ++.|.+||..+....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~--- 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT--- 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE---
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe---
Confidence 678999999999777 5477899999997665433221222 222345567888666555 889999997654211
Q ss_pred ccCCccccceEEec-cCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEE--eeCCCEEEEEc-
Q 009993 221 ISGSEKQNTQFRLW-EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGL--APHDTTVASTS- 293 (520)
Q Consensus 221 ~~~~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~- 293 (520)
.+. .....+..+++ +++.+++...++.|.+|+..+........ ....+.++ .++++++++..
T Consensus 101 -----------~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 169 (270)
T 1rwi_B 101 -----------VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD 169 (270)
T ss_dssp -----------ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG
T ss_pred -----------eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC
Confidence 111 22356788888 45666666678899999866554332221 22234444 47788777766
Q ss_pred CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEec
Q 009993 294 GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE 373 (520)
Q Consensus 294 d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 373 (520)
++.|.+||........... .+...+..++++++|.++++...++.|.+|+..... .......+...+.+++++
T Consensus 170 ~~~i~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~------~~~~~~~~~~~p~~i~~~ 242 (270)
T 1rwi_B 170 NNRVVKLEAESNNQVVLPF-TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT------STVLPFTGLNTPLAVAVD 242 (270)
T ss_dssp GTEEEEECTTTCCEEECCC-SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC------CEECCCCSCSCEEEEEEC
T ss_pred CCEEEEEecCCCceEeecc-cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc------ceeeccCCCCCceeEEEC
Confidence 7899999998766543322 234678899999999888877778999999986652 222222334578999997
Q ss_pred C--CEEEEEeCCCcEEEEeCCcc
Q 009993 374 F--PWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 374 ~--~~l~s~s~dg~i~vwd~~~~ 394 (520)
+ ..+++...++.|+++++...
T Consensus 243 ~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 243 SDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp TTCCEEEEEGGGTEEEEECCCGG
T ss_pred CCCCEEEEECCCCEEEEEcCCCc
Confidence 5 57778888999999998764
No 192
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.40 E-value=3e-09 Score=98.95 Aligned_cols=231 Identities=6% Similarity=-0.037 Sum_probs=153.4
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEE-EeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcc
Q 009993 140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA-SSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLP 216 (520)
Q Consensus 140 ~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~-~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~ 216 (520)
.....+.+++++++|++.++...++.|.+||.. ++... .+......+..+. +++.+.++...++.|..+|.. +..
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 345678899999999988887778999999987 55433 2222223444444 778777776667889999876 421
Q ss_pred eeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEE-ee-eccCEEEEe--eCCCEEE
Q 009993 217 HLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKV-LR-HSDWVYGLA--PHDTTVA 290 (520)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~-~~~~v~~~~--~~~~~l~ 290 (520)
...........+.++++ ++...++...++.|..+|.. ++.... +. ....+.++. +++++++
T Consensus 95 ------------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v 161 (300)
T 2qc5_A 95 ------------TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWF 161 (300)
T ss_dssp ------------EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEE
T ss_pred ------------EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEE
Confidence 11122223456888888 45666666667899999987 554422 22 234566665 6788776
Q ss_pred EEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEE
Q 009993 291 STS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNS 369 (520)
Q Consensus 291 ~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~ 369 (520)
+.. ++.|..+|. +++........+...+..+++.++|.+.++....+.|.+||. ++. ........+...+.+
T Consensus 162 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~-----~~~~~~~~~~~~~~~ 234 (300)
T 2qc5_A 162 TENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE-----ISEYDIPTPNARPHA 234 (300)
T ss_dssp EETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC-----EEEEECSSTTCCEEE
T ss_pred EecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc-----EEEEECCCCCCCceE
Confidence 666 688999998 555443222234457889999999988777777788999998 331 111223344567899
Q ss_pred EEecC--CEEEEEeCCCcEEEEeCC
Q 009993 370 LAFEF--PWLVSAAGDGKLSLIDVR 392 (520)
Q Consensus 370 l~~~~--~~l~s~s~dg~i~vwd~~ 392 (520)
+++++ ...++...++.|..||..
T Consensus 235 i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 235 ITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp EEECSTTCEEEEETTTTEEEEECTT
T ss_pred EEECCCCCEEEeccCCCeEEEECCC
Confidence 99975 444554456899999974
No 193
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.40 E-value=1.5e-10 Score=111.92 Aligned_cols=260 Identities=12% Similarity=0.059 Sum_probs=164.3
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEE
Q 009993 153 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR 232 (520)
Q Consensus 153 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 232 (520)
++..++.++.++.|..+|..+|+.+................+..++.++.++.|..+|..++...- ...... ....
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W-~~~~~~---~~~~ 177 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKW-TVNLDM---PSLS 177 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEE-EEECCC-------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEE-EEeCCC---Ccee
Confidence 466788899999999999999998876654322111111235688889999999999998875321 110000 0000
Q ss_pred eccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEeeeccC-----------E-EEEeeCCCEEEEEc-CCeEEE
Q 009993 233 LWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDW-----------V-YGLAPHDTTVASTS-GSDVYI 299 (520)
Q Consensus 233 ~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-----------v-~~~~~~~~~l~~~~-d~~i~i 299 (520)
.... ......++.++.++.++.+..+|..+++.+.......+ + ......+..++.++ ++.+..
T Consensus 178 ~~~~----~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~ 253 (376)
T 3q7m_A 178 LRGE----SAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTA 253 (376)
T ss_dssp -CCC----CCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEE
T ss_pred ecCC----CCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEE
Confidence 0011 12233567888899999999999999998877652211 0 01112345566666 899999
Q ss_pred EECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec-CCcCCEEEEEecCCEEE
Q 009993 300 WDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI-PHTGPVNSLAFEFPWLV 378 (520)
Q Consensus 300 wd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~l~ 378 (520)
+|.++++.+..... .....+.. ++..++.++.++.+..+|..++ +...... .....+......+..|+
T Consensus 254 ~d~~tG~~~w~~~~---~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG------~~~w~~~~~~~~~~~~~~~~~~~l~ 322 (376)
T 3q7m_A 254 LDLRSGQIMWKREL---GSVNDFIV--DGNRIYLVDQNDRVMALTIDGG------VTLWTQSDLLHRLLTSPVLYNGNLV 322 (376)
T ss_dssp EETTTCCEEEEECC---CCEEEEEE--ETTEEEEEETTCCEEEEETTTC------CEEEEECTTTTSCCCCCEEETTEEE
T ss_pred EECCCCcEEeeccC---CCCCCceE--ECCEEEEEcCCCeEEEEECCCC------cEEEeecccCCCcccCCEEECCEEE
Confidence 99999998877642 22334443 4678888889999999999988 3333333 12223333445678999
Q ss_pred EEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEe
Q 009993 379 SAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWN 449 (520)
Q Consensus 379 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd 449 (520)
.++.+|.|.++|..++....... . .+.. ........+..|+.++.+|.|+.|+
T Consensus 323 v~~~~g~l~~~d~~tG~~~~~~~----------~-------~~~~-~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 323 VGDSEGYLHWINVEDGRFVAQQK----------V-------DSSG-FQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EECTTSEEEEEETTTCCEEEEEE----------C-------CTTC-BCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEEe----------c-------CCCc-ceeCCEEECCEEEEEeCCCEEEEEe
Confidence 99999999999998853221100 0 0000 0001112366888899999999987
No 194
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.39 E-value=1.6e-09 Score=104.12 Aligned_cols=273 Identities=10% Similarity=-0.025 Sum_probs=169.3
Q ss_pred EccCCCEEEEEeC--CC---eEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEe----------CCCcEEEEEcccC
Q 009993 150 VLASAKLLFTSGY--DS---IVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGG----------TDGFIHCWRAVEV 214 (520)
Q Consensus 150 ~~~~~~~l~sgs~--dg---~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~----------~dg~i~vwd~~~~ 214 (520)
..|++++++.... .. +|.++|..+++.+..+.....+-..++|+++.++++. .++.|.+||..+.
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~ 107 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF 107 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence 3467777777653 22 8999999999988888754444667889999999886 3678999998765
Q ss_pred cceeeeccCCccccceEEec--c---CCCCeEEEEE--cCCEEEEEec--CCeEEEEECCCCcEEEE-eeeccCEEEEee
Q 009993 215 LPHLFDISGSEKQNTQFRLW--E---HEGPITSLAL--DLTRIYSGSW--DMTVRVWDRALLKCLKV-LRHSDWVYGLAP 284 (520)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~--~---h~~~v~~l~~--~~~~l~s~s~--dg~v~iwd~~~~~~~~~-~~~~~~v~~~~~ 284 (520)
...- ...+. . +......+.+ ++++|+++.. +++|.++| .+++.+.. +.....+ .+.+
T Consensus 108 ~~~~-----------~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~-~~~~ 174 (373)
T 2mad_H 108 LPIA-----------DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCY-HIHP 174 (373)
T ss_pred cEEE-----------EEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceE-EEEe
Confidence 3210 00010 0 0122345666 7889888874 57899999 99998888 7644433 2334
Q ss_pred CC-CEEEEEc-CCeEEEEECCCCeeeEEeec----ccccc-eEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeee
Q 009993 285 HD-TTVASTS-GSDVYIWDTNSGCLLTVVNG----AHVGN-TKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV 357 (520)
Q Consensus 285 ~~-~~l~~~~-d~~i~iwd~~~~~~~~~~~~----~~~~~-i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~ 357 (520)
.+ +.+++.+ ||.+.++|. +++....... ....+ .....+.+++..++..+..+.+.+.|+..... ..+
T Consensus 175 ~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~----~v~ 249 (373)
T 2mad_H 175 GAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA----TNK 249 (373)
T ss_pred CCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc----eEe
Confidence 43 4444444 899999999 8776633220 01111 12345666666555445788999999875521 111
Q ss_pred eeecC----------CcCCEEEEEecC--CEEEEEeC----------CCcEEEEeCCcccccCCCCCCCceeeeeecCCC
Q 009993 358 ATWIP----------HTGPVNSLAFEF--PWLVSAAG----------DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPP 415 (520)
Q Consensus 358 ~~~~~----------h~~~v~~l~~~~--~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (520)
..+.- .......+.+++ +.++.+.. ++.|.++|..+......
T Consensus 250 ~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~---------------- 313 (373)
T 2mad_H 250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQ---------------- 313 (373)
T ss_pred eeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEE----------------
Confidence 11110 112233356654 55555432 35799999987532211
Q ss_pred cccccCcceeeEEEEecCC-EEEEec-CCCeEEEEeCCchHhHHH
Q 009993 416 QRMLHGFECNLLSVDIGAD-RIVCGG-EEGIVRIWNFSQAFEIER 458 (520)
Q Consensus 416 ~~~~~~~~~~v~~~~~~~~-~l~sg~-~Dg~v~iwd~~~~~~~~~ 458 (520)
..-+....-..++++++ +++++. .++.|.+||..+++.+..
T Consensus 314 --i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 314 --ISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred --EECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 11122344567777888 777777 589999999998876544
No 195
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.35 E-value=3.8e-09 Score=98.18 Aligned_cols=231 Identities=10% Similarity=0.025 Sum_probs=151.9
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcE-EEEeCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcccCcce
Q 009993 141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS-IASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAVEVLPH 217 (520)
Q Consensus 141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~-~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~~~~~~ 217 (520)
+...+.+++++++|.++++...++.|..||.. ++. ..........+..+ .+++.++++...++.|.+||. ++...
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~ 132 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR 132 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE
Confidence 34678999999999988887778899999986 332 22222233344444 477887777777889999987 44211
Q ss_pred eeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEE-ee-eccCEEEEe--eCCCEEEE
Q 009993 218 LFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKV-LR-HSDWVYGLA--PHDTTVAS 291 (520)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~-~~~~v~~~~--~~~~~l~~ 291 (520)
......+...+..+++ ++...++...++.|..||. +++.... .. ....+.++. ++++++++
T Consensus 133 ------------~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~ 199 (299)
T 2z2n_A 133 ------------EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFV 199 (299)
T ss_dssp ------------EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred ------------EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEE
Confidence 1122234456888888 4455665556789999998 6665443 22 234466665 66777776
Q ss_pred Ec-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEE
Q 009993 292 TS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL 370 (520)
Q Consensus 292 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l 370 (520)
.. ++.|.+||. +++........+...+.+++++++|.++++...++.|..||.. +. .....+..+...+.++
T Consensus 200 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~-----~~~~~~~~~~~~~~~i 272 (299)
T 2z2n_A 200 EIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NI-----IEEYPIQIKSAEPHGI 272 (299)
T ss_dssp ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TE-----EEEEECSSSSCCEEEE
T ss_pred ccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cc-----eEEEeCCCCCCccceE
Confidence 66 789999999 6654332222345678999999999977776678899999983 31 1122233455678898
Q ss_pred EecCCEEEEEeCCCcEEEEeCCc
Q 009993 371 AFEFPWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 371 ~~~~~~l~s~s~dg~i~vwd~~~ 393 (520)
.+....|..+...+.|..++..+
T Consensus 273 ~~~~g~l~v~~~~~~l~~~~~~~ 295 (299)
T 2z2n_A 273 CFDGETIWFAMECDKIGKLTLIK 295 (299)
T ss_dssp EECSSCEEEEETTTEEEEEEEC-
T ss_pred EecCCCEEEEecCCcEEEEEcCc
Confidence 88334555555567788887765
No 196
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.35 E-value=1e-10 Score=123.57 Aligned_cols=239 Identities=13% Similarity=-0.051 Sum_probs=152.5
Q ss_pred cccccEEEEEEccCCCEEEEEeCC-----CeEEEEECCCCcEEEEeCCCCc--eEEEEecCCCEEEEEeCCCc-------
Q 009993 140 GHTEAVLTVFVLASAKLLFTSGYD-----SIVRMWHLEDGFSIASSKPLGC--TIRAVAADKKLLVAGGTDGF------- 205 (520)
Q Consensus 140 ~h~~~V~~l~~~~~~~~l~sgs~d-----g~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~l~sg~~dg~------- 205 (520)
+|...+..++|||||++|+.++.+ ..|++||+.+++.+.... +.. .-.+++|| +.|+.++.++.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCcccccccc
Confidence 455578899999999999877654 469999999998765321 111 23467799 88888887654
Q ss_pred -------EEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCC-----eEEEEECCCC--cE
Q 009993 206 -------IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM-----TVRVWDRALL--KC 269 (520)
Q Consensus 206 -------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg-----~v~iwd~~~~--~~ 269 (520)
|++|++.++... ...+.....+...+..+.| ||++|+..+.++ .|++||+.++ ++
T Consensus 238 ~~~~~~~v~~~~lgt~~~~---------~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 308 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSA---------DQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGP 308 (741)
T ss_dssp -CCCCCEEEEEETTSCGGG---------CEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECC
T ss_pred cCCCCCEEEEEECCCCchh---------CEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcc
Confidence 888888665310 0111122233345778888 778888777654 8999999877 41
Q ss_pred EEEee-ec-cCEEEEeeCCCEEEEEc-C----CeEEEEECCCC-eeeEEeecccccceEEEEecCCCCEEEEEeCCCeEE
Q 009993 270 LKVLR-HS-DWVYGLAPHDTTVASTS-G----SDVYIWDTNSG-CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIH 341 (520)
Q Consensus 270 ~~~~~-~~-~~v~~~~~~~~~l~~~~-d----~~i~iwd~~~~-~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~ 341 (520)
...+. +. .....+.+++..|+..+ + +.|.+||+.++ .....+...+...+..+.++ ++.++++...|+..+
T Consensus 309 ~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~ 387 (741)
T 1yr2_A 309 VTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQ 387 (741)
T ss_dssp CEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEE
T ss_pred cEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 33333 33 33334458888877765 2 45999999885 23333333455566677887 566788888999888
Q ss_pred EEEcccCccccceeeeeeecC-CcCCEEEEEecC--C-EEEEEe---CCCcEEEEeCCccc
Q 009993 342 MYEIINDCTEANVLLVATWIP-HTGPVNSLAFEF--P-WLVSAA---GDGKLSLIDVRKLL 395 (520)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~--~-~l~s~s---~dg~i~vwd~~~~~ 395 (520)
||.+.... .....+.. +.+.+..+.+++ + .+++.+ ..++|++||+.++.
T Consensus 388 l~~~~~~g-----~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 388 VLAFDLDG-----KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEETTS-----CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEeCCC-----CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 88665211 22333433 356788888865 3 333333 34789999997653
No 197
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.33 E-value=1.7e-10 Score=109.94 Aligned_cols=180 Identities=12% Similarity=0.031 Sum_probs=126.0
Q ss_pred CCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEE
Q 009993 183 LGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVW 262 (520)
Q Consensus 183 ~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iw 262 (520)
......++++...++++|+.++ +.+|++.+........... ..... ...+.. |+.++|++++|+++ .++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~--~~~~~-~~~lp~-V~~l~fd~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTP--LTFKW-EKEIPD-VIFVCFHGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCC--CCCSE-EEECTT-EEEEEEETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcccccc--ccceE-EeeCCC-eeEEEECCCEEEEE-cCCcEEEE
Confidence 3456678889999999999885 5569876543111000000 11112 223566 99999988999998 88999999
Q ss_pred ECCCCcEEEEee-eccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeE
Q 009993 263 DRALLKCLKVLR-HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI 340 (520)
Q Consensus 263 d~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i 340 (520)
|+.+........ +...+.++.+....++++. ||.|.+||+.++.... +...|++++|+|+| ++.|..||++
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSpkG--~~vg~~dg~i 184 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTNSQ--LAVLLKDRSF 184 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECSSE--EEEEETTSCE
T ss_pred EchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcCCc--eEEEEcCCcE
Confidence 998776554443 6677888775443466655 9999999999887643 45689999999999 6789999999
Q ss_pred EEEEcccCccccceeeeeee------c---CCcCCEEEEEecC--CEEEE
Q 009993 341 HMYEIINDCTEANVLLVATW------I---PHTGPVNSLAFEF--PWLVS 379 (520)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~------~---~h~~~v~~l~~~~--~~l~s 379 (520)
++|+....... ...++ . +|...|.+|.|.+ .++++
T Consensus 185 ~~~~~~~~~~~----~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 185 QSFAWRNGEME----KQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEEEETTEEE----EEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEcCCCcccc----ccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 99988776310 02223 2 4778999999965 35554
No 198
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.33 E-value=1.9e-09 Score=101.15 Aligned_cols=236 Identities=6% Similarity=-0.019 Sum_probs=148.2
Q ss_pred ccccEEEEEEccCCCEEEE-------EeCCCeEEEEECCCCcEEEEeC----CCCceEEEEe--cCCCEEEEEeCCCcEE
Q 009993 141 HTEAVLTVFVLASAKLLFT-------SGYDSIVRMWHLEDGFSIASSK----PLGCTIRAVA--ADKKLLVAGGTDGFIH 207 (520)
Q Consensus 141 h~~~V~~l~~~~~~~~l~s-------gs~dg~v~vwd~~~~~~~~~~~----~~~~~v~~~~--~~~~~l~sg~~dg~i~ 207 (520)
.-....+++|++++.++++ +..++.|.+||..+++...... ++...+..+. +++..++.++..+.|.
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~ 95 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL 95 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEE
Confidence 3345678999999988888 6778999999988877543222 1333444544 6623444555455788
Q ss_pred EEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecC---------------CeEEEEECCCCcEE
Q 009993 208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD---------------MTVRVWDRALLKCL 270 (520)
Q Consensus 208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d---------------g~v~iwd~~~~~~~ 270 (520)
+||.. +....+. .... .......+.++++ +++..++...+ +.|..||.. ++..
T Consensus 96 ~~d~~-g~~~~~~-~~~~-------~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~ 165 (314)
T 1pjx_A 96 VVQTD-GTFEEIA-KKDS-------EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI 165 (314)
T ss_dssp EEETT-SCEEECC-SBCT-------TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE
T ss_pred EEeCC-CCEEEEE-eccC-------CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE
Confidence 99976 4321110 0000 0012245778888 55666665554 567778776 5554
Q ss_pred EEeeeccCEE--EEe----eCCCEEEEE-c-CCeEEEEECC-CCee-----eEEeecccc-cceEEEEecCCCCEEEEEe
Q 009993 271 KVLRHSDWVY--GLA----PHDTTVAST-S-GSDVYIWDTN-SGCL-----LTVVNGAHV-GNTKSLARSHTGDFLFTGG 335 (520)
Q Consensus 271 ~~~~~~~~v~--~~~----~~~~~l~~~-~-d~~i~iwd~~-~~~~-----~~~~~~~~~-~~i~~l~~s~~~~~l~tg~ 335 (520)
.......... .+. ++++.++++ . ++.|.+||+. ++.. ...+. .+. ..+..++++++|.++++..
T Consensus 166 ~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~~ 244 (314)
T 1pjx_A 166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP-GTHEGGADGMDFDEDNNLLVANW 244 (314)
T ss_dssp EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC-CCSSCEEEEEEEBTTCCEEEEEE
T ss_pred EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC-CCCCCCCCceEECCCCCEEEEEc
Confidence 4433323333 344 566555554 4 6899999986 4432 22222 232 5678899999999888888
Q ss_pred CCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEE-EEeCCCcEEEEeCCc
Q 009993 336 EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLV-SAAGDGKLSLIDVRK 393 (520)
Q Consensus 336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~-s~s~dg~i~vwd~~~ 393 (520)
.++.|.+||..++ ..+..+..+...+.++++++ +.|+ +...++.|..|++..
T Consensus 245 ~~~~i~~~d~~~g------~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 245 GSSHIEVFGPDGG------QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTTEEEEECTTCB------SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCEEEEEcCCCC------cEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 8899999998765 33444455667899999965 4454 445668899999875
No 199
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.32 E-value=6.2e-10 Score=117.11 Aligned_cols=264 Identities=10% Similarity=0.005 Sum_probs=157.0
Q ss_pred cCCCEEEEEeCCC-----eEEEEECCCCcEEEEe------CCCCceE--EEEecCCCEEEEEeCCC-----cEEEEEccc
Q 009993 152 ASAKLLFTSGYDS-----IVRMWHLEDGFSIASS------KPLGCTI--RAVAADKKLLVAGGTDG-----FIHCWRAVE 213 (520)
Q Consensus 152 ~~~~~l~sgs~dg-----~v~vwd~~~~~~~~~~------~~~~~~v--~~~~~~~~~l~sg~~dg-----~i~vwd~~~ 213 (520)
|+|++++....++ .+.+.+...+.....+ .++...+ .+++|||++|+.++.++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 7888777554322 3334444344332211 1233333 35679999998776543 899999988
Q ss_pred CcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCe----------------EEEEECCCCcEE--EEe
Q 009993 214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMT----------------VRVWDRALLKCL--KVL 273 (520)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~----------------v~iwd~~~~~~~--~~~ 273 (520)
+... ...+. ...+..++| |++.|+.++.++. |++|++.+++.. ..+
T Consensus 161 g~~~------------~~~~~--~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~ 226 (710)
T 2xdw_A 161 AKEL------------PDVLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCA 226 (710)
T ss_dssp TEEE------------EEEEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEE
T ss_pred CCCC------------ccccc--CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEe
Confidence 7421 11111 122567888 7889998888766 999999887622 222
Q ss_pred e---eccCEEEE--eeCCCEEEEEc------CCeEEEEECCC------Ce-eeEEeecccccceEEEEecCCCCEEEEEe
Q 009993 274 R---HSDWVYGL--APHDTTVASTS------GSDVYIWDTNS------GC-LLTVVNGAHVGNTKSLARSHTGDFLFTGG 335 (520)
Q Consensus 274 ~---~~~~v~~~--~~~~~~l~~~~------d~~i~iwd~~~------~~-~~~~~~~~~~~~i~~l~~s~~~~~l~tg~ 335 (520)
. +...+..+ ++++++|+.++ +..|++||+.+ +. ....+. .+...+.. .|+|+|+.|+..+
T Consensus 227 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~-~~~~~~~~-~~s~dg~~l~~~s 304 (710)
T 2xdw_A 227 EFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI-DNFEGEYD-YVTNEGTVFTFKT 304 (710)
T ss_dssp CCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE-CSSSSCEE-EEEEETTEEEEEE
T ss_pred ccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee-CCCCcEEE-EEeccCCEEEEEE
Confidence 2 34445444 49999887765 35799999986 43 344454 34444544 4888998877665
Q ss_pred CC----CeEEEEEcccCccccceeeeeeecCCcC--CEEEEEec-C-CEEEEEeCCCc--EEEEeCCcccccCCCCCCCc
Q 009993 336 ED----GAIHMYEIINDCTEANVLLVATWIPHTG--PVNSLAFE-F-PWLVSAAGDGK--LSLIDVRKLLRSGRPTSGKR 405 (520)
Q Consensus 336 ~d----g~i~iwd~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~-~-~~l~s~s~dg~--i~vwd~~~~~~~~~~~~~~~ 405 (520)
.+ +.|.+||+.++.. .....+..|.. .+..+.|. . .++++...|+. |.+||+.++.
T Consensus 305 ~~~~~~~~l~~~d~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~---------- 370 (710)
T 2xdw_A 305 NRHSPNYRLINIDFTDPEE----SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA---------- 370 (710)
T ss_dssp CTTCTTCEEEEEETTSCCG----GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC----------
T ss_pred CCCCCCCEEEEEeCCCCCc----ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC----------
Confidence 53 3699999877621 11233444543 67788886 4 46677777875 5566664421
Q ss_pred eeeeeecCCCcccccCcceeeEEEEe--cCCEEE-E---ecCCCeEEEEeCCchH
Q 009993 406 VSRVIEVEPPQRMLHGFECNLLSVDI--GADRIV-C---GGEEGIVRIWNFSQAF 454 (520)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~-s---g~~Dg~v~iwd~~~~~ 454 (520)
....+..+...+..+++ +++.++ + ....++|++||+.++.
T Consensus 371 ---------~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 371 ---------LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ---------EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ---------EEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 11112223344555554 444443 3 2346899999998765
No 200
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.32 E-value=4.5e-10 Score=102.96 Aligned_cols=228 Identities=11% Similarity=0.002 Sum_probs=143.6
Q ss_pred EEEecCCCEEE-EEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEEC
Q 009993 188 RAVAADKKLLV-AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDR 264 (520)
Q Consensus 188 ~~~~~~~~~l~-sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~ 264 (520)
.++.+++++++ +...++.|.+||..+..... ....+...+.++++ +++.+++.. ++.|.+||.
T Consensus 29 i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-------------~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~ 94 (270)
T 1rwi_B 29 VAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-------------LPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAA 94 (270)
T ss_dssp EEECTTCCEEEEECSSSCEEEEECC-----EE-------------CCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECT
T ss_pred eEECCCCCEEEEccCCCCcEEEecCCCcccce-------------EeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeC
Confidence 35558888666 44678899999865442111 01123345677888 445444444 889999998
Q ss_pred CCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeE
Q 009993 265 ALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI 340 (520)
Q Consensus 265 ~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i 340 (520)
.+........ ....+.++. ++++++++.. ++.|.+||..+........ .....+..++++++|+++++...++.|
T Consensus 95 ~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~i 173 (270)
T 1rwi_B 95 GSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-TGLNDPDGVAVDNSGNVYVTDTDNNRV 173 (270)
T ss_dssp TCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCC-CSCCSCCCEEECTTCCEEEEEGGGTEE
T ss_pred CCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecc-ccCCCceeEEEeCCCCEEEEECCCCEE
Confidence 7654432211 224566665 6788777766 7899999876554332221 233467889999999987777778899
Q ss_pred EEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCccc
Q 009993 341 HMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRM 418 (520)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (520)
.+||..... .......+...+.++++++ ..+++...++.|.+||........ .
T Consensus 174 ~~~~~~~~~------~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-------------------~ 228 (270)
T 1rwi_B 174 VKLEAESNN------QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-------------------L 228 (270)
T ss_dssp EEECTTTCC------EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-------------------C
T ss_pred EEEecCCCc------eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-------------------e
Confidence 999987662 2222223336788999976 455555568899999986531110 0
Q ss_pred ccCc--ceeeEEEEecCCEEEEecCCCeEEEEeCCchHh
Q 009993 419 LHGF--ECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFE 455 (520)
Q Consensus 419 ~~~~--~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~ 455 (520)
...+ .....+++++++++++...++.|++++....+.
T Consensus 229 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 229 PFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred ccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 1111 122344455667888888999999999987643
No 201
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.32 E-value=1.1e-10 Score=122.43 Aligned_cols=266 Identities=11% Similarity=-0.035 Sum_probs=155.1
Q ss_pred ccCCCEEEEEeCCC---eEEEE--ECCCCcEEEEe------CCCCceEE--EEecCCCEEE-----EEeCCCcEEEEEcc
Q 009993 151 LASAKLLFTSGYDS---IVRMW--HLEDGFSIASS------KPLGCTIR--AVAADKKLLV-----AGGTDGFIHCWRAV 212 (520)
Q Consensus 151 ~~~~~~l~sgs~dg---~v~vw--d~~~~~~~~~~------~~~~~~v~--~~~~~~~~l~-----sg~~dg~i~vwd~~ 212 (520)
+|+|++++....++ .-.+| +...+.....+ .+|...+. +++|||++|+ .|+.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 47888887766543 34444 44444332222 13443444 5669999998 44445789999998
Q ss_pred cCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCe-------------EEEEECCCCcE--EEEee-
Q 009993 213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMT-------------VRVWDRALLKC--LKVLR- 274 (520)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~-------------v~iwd~~~~~~--~~~~~- 274 (520)
++.... ...+... ....++| |++.|+.++.|.. |++|++.++.. ...+.
T Consensus 156 tg~~~~-----------~~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~ 222 (695)
T 2bkl_A 156 SGEWSK-----------VDVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER 222 (695)
T ss_dssp TCCBCS-----------SCCBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC
T ss_pred CCCCcC-----------CcccCcc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec
Confidence 874210 0011111 1156778 7789999988776 99999988762 22222
Q ss_pred --eccCEEEEe--eCCCEEEEEc-CC----eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEe---CCCeEEE
Q 009993 275 --HSDWVYGLA--PHDTTVASTS-GS----DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG---EDGAIHM 342 (520)
Q Consensus 275 --~~~~v~~~~--~~~~~l~~~~-d~----~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~---~dg~i~i 342 (520)
+...+.++. ++|++++.++ ++ .|+++|..++.... +. .+...+....+ ++|++++.+. .++.|.+
T Consensus 223 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~-~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~ 299 (695)
T 2bkl_A 223 TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRL-LV-KGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFE 299 (695)
T ss_dssp CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEE-EE-ECSSCCEEEEE-ETTEEEEEECTTCTTCEEEE
T ss_pred CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEE-ee-cCCCceEEEEe-cCCcEEEEECCCCCCCEEEE
Confidence 334565554 8998887766 55 67888776664433 33 24445555556 5666444444 2578999
Q ss_pred EEcccCccccceeeeeeecCC--cCCEEEEEecC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccc
Q 009993 343 YEIINDCTEANVLLVATWIPH--TGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML 419 (520)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (520)
||+.++... ....+..+ ...+..++++. .++++...|+..+||.+... +... ..+
T Consensus 300 ~d~~~~~~~----~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~--------g~~~----------~~l 357 (695)
T 2bkl_A 300 VDPAKPARA----SWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLK--------GKPV----------RTV 357 (695)
T ss_dssp EBTTBCSGG----GCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETT--------CCEE----------EEC
T ss_pred EeCCCCCcc----CCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCC--------CCee----------EEe
Confidence 998776310 11223333 44577788865 57777888999888876521 0000 001
Q ss_pred cCc-ceeeEEE--EecCCEEE----EecCCCeEEEEeCCchH
Q 009993 420 HGF-ECNLLSV--DIGADRIV----CGGEEGIVRIWNFSQAF 454 (520)
Q Consensus 420 ~~~-~~~v~~~--~~~~~~l~----sg~~Dg~v~iwd~~~~~ 454 (520)
..+ ...+..+ +++++.++ +....++|++||+.++.
T Consensus 358 ~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 358 QLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp CCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 111 2223333 34455444 33456789999998764
No 202
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.32 E-value=3.2e-10 Score=107.61 Aligned_cols=272 Identities=13% Similarity=0.083 Sum_probs=169.3
Q ss_pred EEccCCCEEEEEeC-----CCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEe----------CCCcEEEEEccc
Q 009993 149 FVLASAKLLFTSGY-----DSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGG----------TDGFIHCWRAVE 213 (520)
Q Consensus 149 ~~~~~~~~l~sgs~-----dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~----------~dg~i~vwd~~~ 213 (520)
...|+++.++.... ++.|.+.|..+++.+.++.....+-..++|++++++++. .++.|.+||..+
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t 118 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT 118 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCcEEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence 34688988888765 689999999999999888643333378889999888775 367899999987
Q ss_pred CcceeeeccCCccccceEEe--cc-----CCCCeEEEEE--cCCEEEEEec--CCeEEEEECCCCcEEEEeeeccCEEEE
Q 009993 214 VLPHLFDISGSEKQNTQFRL--WE-----HEGPITSLAL--DLTRIYSGSW--DMTVRVWDRALLKCLKVLRHSDWVYGL 282 (520)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~--~~-----h~~~v~~l~~--~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~v~~~ 282 (520)
... ...+ .. .......+.+ |+++++++.. ++.|.++|+.+++.+.++...+. ..+
T Consensus 119 ~~v-------------~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-~~~ 184 (386)
T 3sjl_D 119 LLP-------------TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-YHI 184 (386)
T ss_dssp CCE-------------EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEE
T ss_pred CeE-------------EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-cee
Confidence 642 1221 11 0112334566 8888888764 68999999999999998874432 233
Q ss_pred ee-CCCEEEEEc-CCeEEEEECCC-CeeeEEeeccc----ccceE-EEEec-CCCCEEEEEeCCCeEEEEEcccCccccc
Q 009993 283 AP-HDTTVASTS-GSDVYIWDTNS-GCLLTVVNGAH----VGNTK-SLARS-HTGDFLFTGGEDGAIHMYEIINDCTEAN 353 (520)
Q Consensus 283 ~~-~~~~l~~~~-d~~i~iwd~~~-~~~~~~~~~~~----~~~i~-~l~~s-~~~~~l~tg~~dg~i~iwd~~~~~~~~~ 353 (520)
.| ..+.+++.+ ||.+.+.++.+ ++...... .+ ..++. ...|. ++|++++ .+.+|.|++.|+.+...
T Consensus 185 ~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~-~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~--- 259 (386)
T 3sjl_D 185 FPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT-EVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDA--- 259 (386)
T ss_dssp EEEETTEEEEEETTSCEEEEECCSSSCCEEEEC-CCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSC---
T ss_pred ecCCCceeEEECCCCCEEEEECCCCCeEEEeec-ceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcc---
Confidence 33 344554544 89999999876 55432211 11 11221 23553 5675555 55689999999976632
Q ss_pred eeeeeeec---------C-CcCCEEEEEecC--CEEEEEeC----------CCcEEEEeCCcccccCCCCCCCceeeeee
Q 009993 354 VLLVATWI---------P-HTGPVNSLAFEF--PWLVSAAG----------DGKLSLIDVRKLLRSGRPTSGKRVSRVIE 411 (520)
Q Consensus 354 ~~~~~~~~---------~-h~~~v~~l~~~~--~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 411 (520)
.....+. + ..+....+++++ +.++.... .+.|.+.|+.+.....
T Consensus 260 -~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~------------- 325 (386)
T 3sjl_D 260 -KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA------------- 325 (386)
T ss_dssp -EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE-------------
T ss_pred -eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEE-------------
Confidence 1111111 0 111222355554 55555432 2579999998852221
Q ss_pred cCCCcccccCcceeeEEEEecCC-EEEE-ecCCCeEEEEeCCchHhHHH
Q 009993 412 VEPPQRMLHGFECNLLSVDIGAD-RIVC-GGEEGIVRIWNFSQAFEIER 458 (520)
Q Consensus 412 ~~~~~~~~~~~~~~v~~~~~~~~-~l~s-g~~Dg~v~iwd~~~~~~~~~ 458 (520)
+..-++...-..++++++ +|++ ...++.|.++|..+++.+++
T Consensus 326 -----~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 326 -----KFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp -----EEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred -----EEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 112233344567777776 5555 56699999999998765543
No 203
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.30 E-value=5.6e-11 Score=109.27 Aligned_cols=218 Identities=10% Similarity=-0.059 Sum_probs=144.9
Q ss_pred CCEEEEEecCCeEEEEECCCCcEEEEeeec--cCEEEEe--eCCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEE
Q 009993 247 LTRIYSGSWDMTVRVWDRALLKCLKVLRHS--DWVYGLA--PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSL 322 (520)
Q Consensus 247 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~--~~v~~~~--~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l 322 (520)
++.|++++.|+.|.+||.++++.+..+... ..+.++. +++++++ +.++.|+.||. +++.+..+..+....+.++
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~ 82 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQTA 82 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCcccccc
Confidence 467899999999999999999999988733 2444444 8999888 45788999999 8999998875434578899
Q ss_pred EecCCCCEEEEEeC-CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe--cCCEEEEEeCCCcEEEEeCCcccccCC
Q 009993 323 ARSHTGDFLFTGGE-DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGR 399 (520)
Q Consensus 323 ~~s~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~ 399 (520)
.+.|+|+++++.+. ++.|..+|. +++.......-.....+......+++ +++++++...++.|..||.. +.....
T Consensus 83 ~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~ 160 (276)
T 3no2_A 83 RILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNS 160 (276)
T ss_dssp EECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred EECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEE
Confidence 99999999999887 777877775 44211111100000122223334444 45899999999999999987 432211
Q ss_pred CCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhh-cccccchhhhhccce
Q 009993 400 PTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARAL-RGIRLENRMRRRKLQ 478 (520)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 478 (520)
... . +. .......++++.+++++.+++|..+|..+++.+.+..... .+.+ ...+..
T Consensus 161 ~~~------------~-----~~-~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~-----l~~~~~ 217 (276)
T 3no2_A 161 VKL------------S-----GT-PFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQ-----LFFVAQ 217 (276)
T ss_dssp EEC------------S-----SC-CCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCC-----CSEEEE
T ss_pred EEC------------C-----CC-ccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcc-----cccccc
Confidence 100 0 01 1112344667788888888899999999887765543211 1110 122456
Q ss_pred eeeccCCCccccc
Q 009993 479 TEMSSKGGRTDQC 491 (520)
Q Consensus 479 ~~~s~~g~~~~~~ 491 (520)
+...++|..+++.
T Consensus 218 ~~~~~~G~i~v~~ 230 (276)
T 3no2_A 218 LFPLQNGGLYICN 230 (276)
T ss_dssp EEECTTSCEEEEE
T ss_pred ceEcCCCCEEEEe
Confidence 7778888777665
No 204
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.29 E-value=1.8e-09 Score=100.44 Aligned_cols=185 Identities=13% Similarity=0.057 Sum_probs=124.0
Q ss_pred EEEEecCCC-EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEE
Q 009993 187 IRAVAADKK-LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWD 263 (520)
Q Consensus 187 v~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd 263 (520)
-.+++++++ +++++..++.|..||..++ ...+..+...+.++++ +++.+++...++.|.+||
T Consensus 32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~---------------~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQ---------------LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR 96 (296)
T ss_dssp EEEEEGGGTEEEEEEGGGTEEEEEETTSC---------------EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred CCeEeCCCCEEEEEeCCCCEEEEEECCCC---------------eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence 346678888 7888888999999997654 2233346677899999 566666666678999999
Q ss_pred CCCCcEEEEeee-----ccCEEE--EeeCCCEEEEE----c--------------CCeEEEEECCCCeeeEEeecccccc
Q 009993 264 RALLKCLKVLRH-----SDWVYG--LAPHDTTVAST----S--------------GSDVYIWDTNSGCLLTVVNGAHVGN 318 (520)
Q Consensus 264 ~~~~~~~~~~~~-----~~~v~~--~~~~~~~l~~~----~--------------d~~i~iwd~~~~~~~~~~~~~~~~~ 318 (520)
..+++....... ...+.. +.++|+++++. . .+.|..+|.. ++.. .+. .+...
T Consensus 97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~-~~~~~ 173 (296)
T 3e5z_A 97 EPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-API-RDRVK 173 (296)
T ss_dssp STTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEE-CCCSS
T ss_pred CCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-Eee-cCCCC
Confidence 988876544321 122333 44888888863 2 2467777766 4433 333 35667
Q ss_pred eEEEEecCCCCEEEEEeCCCeEEEEEcc-cCccccceeeeeeecCCcCCEEEEEecC-CEEEEEeCCCcEEEEeCCc
Q 009993 319 TKSLARSHTGDFLFTGGEDGAIHMYEII-NDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 319 i~~l~~s~~~~~l~tg~~dg~i~iwd~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~ 393 (520)
...++|+|+++.+++.+.++.|.+|++. ++..... ...+..+...+.++++++ ..|..+. ++.|.+||...
T Consensus 174 ~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~---~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~g 246 (296)
T 3e5z_A 174 PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQ---GVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPDG 246 (296)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEE---EEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTTS
T ss_pred CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCC---CeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCCC
Confidence 7899999999988778888999999997 3311000 112233556677889975 2344444 88999999863
No 205
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.26 E-value=5.8e-09 Score=101.60 Aligned_cols=229 Identities=14% Similarity=0.114 Sum_probs=151.6
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCC--cEEEEEcccCcceeee
Q 009993 143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDG--FIHCWRAVEVLPHLFD 220 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg--~i~vwd~~~~~~~~~~ 220 (520)
.....|+|+++++++++...++.|++||..++..............++.++++.|+++..++ .|.+++..++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~--- 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP--- 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCBCEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE---
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCceeEecCCCcEEEEecCCCceEEEEEcCCCcee---
Confidence 46789999999998888888899999999887665444332222267889999999988876 7888887654210
Q ss_pred ccCCccccceEEe-ccCCCCeEEEEEc--CCEEEEEecCCeEEEEECCCCcEEEE----ee-ec--cC--EEEEeeC-CC
Q 009993 221 ISGSEKQNTQFRL-WEHEGPITSLALD--LTRIYSGSWDMTVRVWDRALLKCLKV----LR-HS--DW--VYGLAPH-DT 287 (520)
Q Consensus 221 ~~~~~~~~~~~~~-~~h~~~v~~l~~~--~~~l~s~s~dg~v~iwd~~~~~~~~~----~~-~~--~~--v~~~~~~-~~ 287 (520)
.....+ ......+.+++++ +..|+.+..++.|+.||..++..... .. .. .+ =..+.++ +.
T Consensus 208 -------~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ 280 (409)
T 3hrp_A 208 -------TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN 280 (409)
T ss_dssp -------EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE
T ss_pred -------EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE
Confidence 000011 1144566778884 46777777789999999987764332 11 11 11 2344564 45
Q ss_pred EEEEEc-CCeEEEEECCCCeeeEEeeccc---------------ccceEEEEecCCCCEEEEEe-CCCeEEEEEcccCcc
Q 009993 288 TVASTS-GSDVYIWDTNSGCLLTVVNGAH---------------VGNTKSLARSHTGDFLFTGG-EDGAIHMYEIINDCT 350 (520)
Q Consensus 288 ~l~~~~-d~~i~iwd~~~~~~~~~~~~~~---------------~~~i~~l~~s~~~~~l~tg~-~dg~i~iwd~~~~~~ 350 (520)
++++.. ++.|+.||.... +..+. ++ -.....++++|+|.++++-. .++.|+.|++.++.
T Consensus 281 lyv~d~~~~~I~~~~~~g~--~~~~~-g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~- 356 (409)
T 3hrp_A 281 FYMSDQNLSSVYKITPDGE--CEWFC-GSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY- 356 (409)
T ss_dssp EEEEETTTTEEEEECTTCC--EEEEE-ECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE-
T ss_pred EEEEeCCCCEEEEEecCCC--EEEEE-eCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE-
Confidence 555555 788999997654 22222 12 23478999999999888877 88999999976662
Q ss_pred ccceeeeeeecCC---------------cCCEEEEEecC--CEEEEEeCCCcEEEEeC
Q 009993 351 EANVLLVATWIPH---------------TGPVNSLAFEF--PWLVSAAGDGKLSLIDV 391 (520)
Q Consensus 351 ~~~~~~~~~~~~h---------------~~~v~~l~~~~--~~l~s~s~dg~i~vwd~ 391 (520)
+.++.++ -.....+++++ .++++-..++.|+.+++
T Consensus 357 ------v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 357 ------VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ------EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred ------EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 2222222 24578899976 35555566778887764
No 206
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.25 E-value=1e-09 Score=113.89 Aligned_cols=189 Identities=14% Similarity=0.028 Sum_probs=125.2
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeCCCCc-----------eEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeecc
Q 009993 154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC-----------TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS 222 (520)
Q Consensus 154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~-----------~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 222 (520)
+..|+.++.++.|.-+|..+|+.+.++..... ....+...+..+++++.|+.|..+|..+|+.. +...
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~-W~~~ 155 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEV-WHQN 155 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEE-EEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEE-eeec
Confidence 56677788889999999999999988764321 01122335778999999999999999988532 1111
Q ss_pred CCccccceEEeccCCCCeE-EEEEcCCEEEEEec------CCeEEEEECCCCcEEEEeeecc------------------
Q 009993 223 GSEKQNTQFRLWEHEGPIT-SLALDLTRIYSGSW------DMTVRVWDRALLKCLKVLRHSD------------------ 277 (520)
Q Consensus 223 ~~~~~~~~~~~~~h~~~v~-~l~~~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~~~------------------ 277 (520)
..... .....+. .....++.++.++. ++.|+.+|..+++.+..+....
T Consensus 156 ~~~~~-------~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~ 228 (677)
T 1kb0_A 156 TFEGQ-------KGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAART 228 (677)
T ss_dssp TTTTC-------CSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred CCcCc-------CcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccc
Confidence 10000 0001111 11234566666654 7999999999999988775211
Q ss_pred -----------------CEEEEeeCCCEEEEEc-CC-------------------eEEEEECCCCeeeEEeecccc----
Q 009993 278 -----------------WVYGLAPHDTTVASTS-GS-------------------DVYIWDTNSGCLLTVVNGAHV---- 316 (520)
Q Consensus 278 -----------------~v~~~~~~~~~l~~~~-d~-------------------~i~iwd~~~~~~~~~~~~~~~---- 316 (520)
...++.+++..++.+. ++ .|..+|.++|+.+..+...+.
T Consensus 229 w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd 308 (677)
T 1kb0_A 229 WDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWD 308 (677)
T ss_dssp SCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC
T ss_pred ccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccc
Confidence 1124456778888776 43 499999999999888764322
Q ss_pred ----cceEEEEecCCC---CEEEEEeCCCeEEEEEcccCcc
Q 009993 317 ----GNTKSLARSHTG---DFLFTGGEDGAIHMYEIINDCT 350 (520)
Q Consensus 317 ----~~i~~l~~s~~~---~~l~tg~~dg~i~iwd~~~~~~ 350 (520)
.....+....+| ..++.++.+|.++++|..+++.
T Consensus 309 ~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~ 349 (677)
T 1kb0_A 309 YTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF 349 (677)
T ss_dssp CCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred cccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 122233344467 6889999999999999999853
No 207
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.24 E-value=2.8e-08 Score=95.34 Aligned_cols=228 Identities=9% Similarity=-0.077 Sum_probs=149.0
Q ss_pred EEEEccCCCEEEEEe----------CCCeEEEEECCCCcEEEEeCCC---------CceEEEEecCCCEEEEEeC--CCc
Q 009993 147 TVFVLASAKLLFTSG----------YDSIVRMWHLEDGFSIASSKPL---------GCTIRAVAADKKLLVAGGT--DGF 205 (520)
Q Consensus 147 ~l~~~~~~~~l~sgs----------~dg~v~vwd~~~~~~~~~~~~~---------~~~v~~~~~~~~~l~sg~~--dg~ 205 (520)
.++++|||++++.+. .++.|.+||..+.+.+..+... ...-..++|+|++|+++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 889999999999886 3678999999998887766421 2234568899999998874 478
Q ss_pred EEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee------eccCE
Q 009993 206 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR------HSDWV 279 (520)
Q Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~------~~~~v 279 (520)
|.++| .++.. ...+....+.+.-....+..+++.+.||.+.++|. +++...... ...++
T Consensus 150 v~viD-~t~~~-------------~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~ 214 (373)
T 2mad_H 150 VGLVV-QGGSS-------------DDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNL 214 (373)
T ss_pred EEEEE-CCCCE-------------EeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcce
Confidence 99999 77631 12201111222111123456777888999999999 887664322 11111
Q ss_pred E---EEeeC-CCEEEEEcCCeEEEEECCCCe--eeEEeec--c-------cccceEEEEecCCCCEEEEEeC--------
Q 009993 280 Y---GLAPH-DTTVASTSGSDVYIWDTNSGC--LLTVVNG--A-------HVGNTKSLARSHTGDFLFTGGE-------- 336 (520)
Q Consensus 280 ~---~~~~~-~~~l~~~~d~~i~iwd~~~~~--~~~~~~~--~-------~~~~i~~l~~s~~~~~l~tg~~-------- 336 (520)
. .+.++ +.+++...++.+.+.|+..+. .+..+.. . .......+.++|+++.++++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~ 294 (373)
T 2mad_H 215 LTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLH 294 (373)
T ss_pred eecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCccccc
Confidence 1 12333 344444457899999997653 2222210 0 1223445789999998887653
Q ss_pred --CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--C-EEEEEe-CCCcEEEEeCCcccc
Q 009993 337 --DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P-WLVSAA-GDGKLSLIDVRKLLR 396 (520)
Q Consensus 337 --dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~-~l~s~s-~dg~i~vwd~~~~~~ 396 (520)
++.|.++|..+. +.+.++.. .....++.|++ + .++++. .++.|.++|+.+...
T Consensus 295 ~~~~~V~VID~~t~------~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 295 AAAKEVTSVTGLVG------QTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred CCCCeEEEEECCCC------EEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 357999999988 55555532 23578899976 4 677777 589999999998643
No 208
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.24 E-value=1.2e-09 Score=113.76 Aligned_cols=189 Identities=14% Similarity=0.089 Sum_probs=122.5
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeCCCCce-----------EEEEecCCCEEEEEeCCCcEEEEEcccCcceeeecc
Q 009993 154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT-----------IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS 222 (520)
Q Consensus 154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~-----------v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 222 (520)
+..|+.++.++.|..+|..+|+.+..+...... .......+..+++++.|+.|..+|..+|+.. +...
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~-W~~~ 148 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRA-WSVD 148 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEE-EEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEe-eeec
Confidence 667888888999999999999999887543210 0112235678899999999999999988632 1111
Q ss_pred CC-ccccceEEeccCCCCeEEEEEcCCEEEEEe------cCCeEEEEECCCCcEEEEeeec--c----------------
Q 009993 223 GS-EKQNTQFRLWEHEGPITSLALDLTRIYSGS------WDMTVRVWDRALLKCLKVLRHS--D---------------- 277 (520)
Q Consensus 223 ~~-~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~~--~---------------- 277 (520)
.. ... . .......+ .+.++.++.++ .+|.|..||.++++.+..+... .
T Consensus 149 ~~~~~~-~--~~~~~~sP----~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~ 221 (689)
T 1yiq_A 149 TRADHK-R--SYTITGAP----RVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKT 221 (689)
T ss_dssp CCSCTT-S--CCBCCSCC----EEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTT
T ss_pred CcCCCC-C--CccccCCc----EEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccc
Confidence 10 000 0 00001111 12345555554 3789999999999988776510 0
Q ss_pred ----------------CEEEEeeCCCEEEEEc-CC-------------------eEEEEECCCCeeeEEeecc-cc----
Q 009993 278 ----------------WVYGLAPHDTTVASTS-GS-------------------DVYIWDTNSGCLLTVVNGA-HV---- 316 (520)
Q Consensus 278 ----------------~v~~~~~~~~~l~~~~-d~-------------------~i~iwd~~~~~~~~~~~~~-~~---- 316 (520)
...++.++..+++.+. ++ .|..+|.++|+.+..+... |.
T Consensus 222 ~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~ 301 (689)
T 1yiq_A 222 WFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDY 301 (689)
T ss_dssp CCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCC
T ss_pred cCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccc
Confidence 0234556778888887 54 3999999999999887642 21
Q ss_pred ---cceEEEEecCCCC---EEEEEeCCCeEEEEEcccCcc
Q 009993 317 ---GNTKSLARSHTGD---FLFTGGEDGAIHMYEIINDCT 350 (520)
Q Consensus 317 ---~~i~~l~~s~~~~---~l~tg~~dg~i~iwd~~~~~~ 350 (520)
.++.......+|+ .++.++.+|.++++|..+++.
T Consensus 302 ~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 341 (689)
T 1yiq_A 302 TATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL 341 (689)
T ss_dssp CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred cCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence 1222222223554 788999999999999999854
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.24 E-value=3.6e-10 Score=107.72 Aligned_cols=170 Identities=10% Similarity=-0.044 Sum_probs=126.5
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEECCCCc-----------EEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcc
Q 009993 144 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF-----------SIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAV 212 (520)
Q Consensus 144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~ 212 (520)
.+..+++++...++++|+.++ +++|++.+.. ..... .+.. |..+..+++.|+++ .++.|++||+.
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~ 114 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCFHGDQVLVS-TRNALYSLDLE 114 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEEETTEEEEE-ESSEEEEEESS
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEECCCEEEEE-cCCcEEEEEch
Confidence 688999999999999999986 6669865332 11112 2334 66666688999999 88999999987
Q ss_pred cCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEeeCCCEEEEE
Q 009993 213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVAST 292 (520)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 292 (520)
+.. .......|...+.++.+.+..+++++.||.|.+||+.++.... +...|.+++...+-++.|
T Consensus 115 sl~-------------~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG~~vg 178 (388)
T 1xip_A 115 ELS-------------EFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQLAVL 178 (388)
T ss_dssp STT-------------CEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSEEEEE
T ss_pred hhh-------------ccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCceEEE
Confidence 642 2234456777888888855459999999999999999887653 456788888333335566
Q ss_pred c-CCeEEEEECCCCee--eEEeec--------ccccceEEEEecCCCCEEEE
Q 009993 293 S-GSDVYIWDTNSGCL--LTVVNG--------AHVGNTKSLARSHTGDFLFT 333 (520)
Q Consensus 293 ~-d~~i~iwd~~~~~~--~~~~~~--------~~~~~i~~l~~s~~~~~l~t 333 (520)
. ||++++|+...++. ...+.. +|...|.++.|.+++.++++
T Consensus 179 ~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 179 LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 6 99999999988875 555521 36788999999999998886
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.20 E-value=1.3e-08 Score=95.38 Aligned_cols=233 Identities=11% Similarity=0.067 Sum_probs=142.8
Q ss_pred EEEecCCCEEEE-------EeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCCe
Q 009993 188 RAVAADKKLLVA-------GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMT 258 (520)
Q Consensus 188 ~~~~~~~~~l~s-------g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~ 258 (520)
.++.+++.++++ +..++.|.+||..++....+.. ....++...+.++++++ ..++.++.++.
T Consensus 23 ~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~---------~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~ 93 (314)
T 1pjx_A 23 PVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK---------PEVNGYGGIPAGCQCDRDANQLFVADMRLG 93 (314)
T ss_dssp EEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC---------CEETTEECCEEEEEECSSSSEEEEEETTTE
T ss_pred ceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe---------cccCCCCCCCceEEEecCCCcEEEEECCCC
Confidence 345578887777 5778899999977664221110 00112456788999943 46666665568
Q ss_pred EEEEECCCCcEEEE-ee-----eccCEEEEe--eCCCEEEEEc-C---------------CeEEEEECCCCeeeEEeecc
Q 009993 259 VRVWDRALLKCLKV-LR-----HSDWVYGLA--PHDTTVASTS-G---------------SDVYIWDTNSGCLLTVVNGA 314 (520)
Q Consensus 259 v~iwd~~~~~~~~~-~~-----~~~~v~~~~--~~~~~l~~~~-d---------------~~i~iwd~~~~~~~~~~~~~ 314 (520)
|.+||.. ++.... .. ....+.++. ++++++++.. + +.|..||.. ++..... .
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~--~ 169 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD--T 169 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE--E
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec--c
Confidence 9999998 765443 22 112355555 7788777766 4 568888876 5543332 2
Q ss_pred cccceEEEEec----CCCCEEEEE-eCCCeEEEEEcccCccccceeeeeeecCCc-CCEEEEEecC--CEEEEEeCCCcE
Q 009993 315 HVGNTKSLARS----HTGDFLFTG-GEDGAIHMYEIINDCTEANVLLVATWIPHT-GPVNSLAFEF--PWLVSAAGDGKL 386 (520)
Q Consensus 315 ~~~~i~~l~~s----~~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~--~~l~s~s~dg~i 386 (520)
+......++++ |+++.++.+ ..++.|.+||+..............+..+. ..+..+++++ .++++...++.|
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i 249 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI 249 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence 44557889999 999765554 567899999986321111112233344444 5678899975 566666678899
Q ss_pred EEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEE--ecCC-EEEEecCCCeEEEEeCCc
Q 009993 387 SLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVD--IGAD-RIVCGGEEGIVRIWNFSQ 452 (520)
Q Consensus 387 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~-~l~sg~~Dg~v~iwd~~~ 452 (520)
.+||..++... ..+..+...+.++. ++++ ++++...++.|..|++..
T Consensus 250 ~~~d~~~g~~~-------------------~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 250 EVFGPDGGQPK-------------------MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEECTTCBSCS-------------------EEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEcCCCCcEe-------------------EEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99998753211 11111222344444 5566 555666778999999874
No 211
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.18 E-value=3e-09 Score=111.38 Aligned_cols=236 Identities=11% Similarity=0.023 Sum_probs=146.2
Q ss_pred ccccccEEEEEEccCCCEEEE-----EeCCCeEEEEECCCCcEEEE-eCCCCceEEEEecCCCEEEEEeCCCc-------
Q 009993 139 YGHTEAVLTVFVLASAKLLFT-----SGYDSIVRMWHLEDGFSIAS-SKPLGCTIRAVAADKKLLVAGGTDGF------- 205 (520)
Q Consensus 139 ~~h~~~V~~l~~~~~~~~l~s-----gs~dg~v~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~l~sg~~dg~------- 205 (520)
++|...+..++|||||++||- |+.+.+|++||+.+++.+.. +........+++ |++.|+.++.+..
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 457778999999999998884 33346799999999986543 222212334678 9999998888743
Q ss_pred ------EEEEEcccCcceeeeccCCccccceEEecc-CCCCeEEEEE--cCCEEEEEec----CCeEEEEECCCCc-EEE
Q 009993 206 ------IHCWRAVEVLPHLFDISGSEKQNTQFRLWE-HEGPITSLAL--DLTRIYSGSW----DMTVRVWDRALLK-CLK 271 (520)
Q Consensus 206 ------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~--~~~~l~s~s~----dg~v~iwd~~~~~-~~~ 271 (520)
|++|++.++.. ....+..... |...+..+.+ |+++|+.... +..|+++|+.++. ...
T Consensus 204 ~~~~~~v~~~~lgt~~~---------~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~ 274 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQE---------DDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLL 274 (693)
T ss_dssp -CCCCEEEEEETTSCGG---------GCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCE
T ss_pred cCCCcEEEEEECCCCcc---------cceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceE
Confidence 88898876531 0111222222 3445677777 7777654432 2589999998763 233
Q ss_pred Ee-eeccCEEE-EeeCCCEEEE-Ec-C---CeEEEEECCCCee--eEEeecccccceEEEEecCCCCEEEEEeC-CC--e
Q 009993 272 VL-RHSDWVYG-LAPHDTTVAS-TS-G---SDVYIWDTNSGCL--LTVVNGAHVGNTKSLARSHTGDFLFTGGE-DG--A 339 (520)
Q Consensus 272 ~~-~~~~~v~~-~~~~~~~l~~-~~-d---~~i~iwd~~~~~~--~~~~~~~~~~~i~~l~~s~~~~~l~tg~~-dg--~ 339 (520)
.+ .+...... +.+++..++. +. + +.|..+|+.++.. ...+. .|...+. .|+++++.|+.... ++ .
T Consensus 275 ~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~--~~s~~g~~lv~~~~~~g~~~ 351 (693)
T 3iuj_A 275 TVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI-PERQQVL--TVHSGSGYLFAEYMVDATAR 351 (693)
T ss_dssp EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE-CCCSSCE--EEEEETTEEEEEEEETTEEE
T ss_pred EEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe-cCCCCEE--EEEEECCEEEEEEEECCeeE
Confidence 33 34333333 5566665544 43 3 5799999988754 23444 3555554 88899988776655 44 6
Q ss_pred EEEEEcccCccccceeeeeee-cCCcCCEEEEEecC--CEE-EEEeC---CCcEEEEeCCcc
Q 009993 340 IHMYEIINDCTEANVLLVATW-IPHTGPVNSLAFEF--PWL-VSAAG---DGKLSLIDVRKL 394 (520)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~--~~l-~s~s~---dg~i~vwd~~~~ 394 (520)
|++||+..+. ...+ ....+.+..+.+++ +.| ++.+. -++|..||+.++
T Consensus 352 l~~~d~~g~~-------~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 352 VEQFDYEGKR-------VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEEECTTSCE-------EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEEEECCCCe-------eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 8888887541 1222 23344566666653 333 33332 278999998754
No 212
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.17 E-value=7.1e-08 Score=89.51 Aligned_cols=228 Identities=9% Similarity=-0.005 Sum_probs=146.9
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEE-EeCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcccCcce
Q 009993 141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA-SSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAVEVLPH 217 (520)
Q Consensus 141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~-~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~~~~~~ 217 (520)
+...+.+++++++|++.++...++.|..||.. ++... ........+..+ .+++.++++...++.|..+|.. +..
T Consensus 60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~- 136 (300)
T 2qc5_A 60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI- 136 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE-
T ss_pred CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE-
Confidence 34678999999999988877778899999987 55432 222222334444 4778877777668889988875 321
Q ss_pred eeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee--eccCEEEEe--eCCCEEEE
Q 009993 218 LFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA--PHDTTVAS 291 (520)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~--~~~~~l~~ 291 (520)
....+......+.++++ +++..++...++.|..+|. +++...... ....+.++. ++++++++
T Consensus 137 -----------~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~ 204 (300)
T 2qc5_A 137 -----------YEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFV 204 (300)
T ss_dssp -----------EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred -----------EEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEE
Confidence 11122234456788888 4565555555789999998 555443211 234566665 66777777
Q ss_pred Ec-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEE
Q 009993 292 TS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL 370 (520)
Q Consensus 292 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l 370 (520)
.. .+.|.+||. ++.........+...+.+++++++|.+.++...++.|..||.. +. .....+......+.++
T Consensus 205 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~-----~~~~~~~~~~~~~~~i 277 (300)
T 2qc5_A 205 EIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NT-----IQEYQLQTENAEPHGI 277 (300)
T ss_dssp ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC-----EEEEECCSTTCCCCCE
T ss_pred ccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-Cc-----EEEEECCccCCcccee
Confidence 66 678999998 5544333222345678899999999977777677899999983 31 1122223334567888
Q ss_pred EecC-CEEEEEeCCCcEEEEeC
Q 009993 371 AFEF-PWLVSAAGDGKLSLIDV 391 (520)
Q Consensus 371 ~~~~-~~l~s~s~dg~i~vwd~ 391 (520)
.+++ ..|..++.. .|..+|.
T Consensus 278 ~~~~~g~l~v~~~~-~i~~~~p 298 (300)
T 2qc5_A 278 TFGKDGSVWFALKC-KIGKLNL 298 (300)
T ss_dssp EECTTSCEEEECSS-EEEEEEE
T ss_pred EeCCCCCEEEEccC-ceEEeCC
Confidence 8875 345555544 6766664
No 213
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.15 E-value=8.2e-09 Score=99.77 Aligned_cols=271 Identities=13% Similarity=0.074 Sum_probs=168.0
Q ss_pred cCCCEEEEEeCC-----CeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEe----------CCCcEEEEEcccCcc
Q 009993 152 ASAKLLFTSGYD-----SIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGG----------TDGFIHCWRAVEVLP 216 (520)
Q Consensus 152 ~~~~~l~sgs~d-----g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~----------~dg~i~vwd~~~~~~ 216 (520)
++++.++..... +.|.+.|..+++.+.++..-..+-..++|+++.++++. .++.|.++|..+...
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v 161 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLPHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP 161 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCCceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE
Confidence 466666655442 69999999999999888633333567889999888876 367899999887642
Q ss_pred eeeeccCCccccceEEec--c---CCCCeEEEEE--cCCEEEEEec--CCeEEEEECCCCcEEEEeeeccCEEEEeeCC-
Q 009993 217 HLFDISGSEKQNTQFRLW--E---HEGPITSLAL--DLTRIYSGSW--DMTVRVWDRALLKCLKVLRHSDWVYGLAPHD- 286 (520)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~--~---h~~~v~~l~~--~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~- 286 (520)
. ....+. . .......+.+ |+++++++.. +++|.+.|+.+++.+..+..... ..+.+++
T Consensus 162 v-----------~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-~~~~p~g~ 229 (426)
T 3c75_H 162 I-----------ADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-YHIFPASP 229 (426)
T ss_dssp E-----------EEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEEET
T ss_pred E-----------EEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-eeeccCCC
Confidence 1 111111 0 0112334566 7888888764 57999999999999988874332 2333433
Q ss_pred CEEEEEc-CCeEEEEECCCCeeeEE----eecccccc-eEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeee
Q 009993 287 TTVASTS-GSDVYIWDTNSGCLLTV----VNGAHVGN-TKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW 360 (520)
Q Consensus 287 ~~l~~~~-d~~i~iwd~~~~~~~~~----~~~~~~~~-i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~ 360 (520)
..+++.+ ||.+.+.+..+++.... +.. ...+ ...+.+.+++..++..+..+.+.+.|+...... .+..+
T Consensus 230 ~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v-~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~----v~~~~ 304 (426)
T 3c75_H 230 TVFYMNCRDGSLARVDFADGETKVTNTEVFHT-EDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGAT----FRAPI 304 (426)
T ss_dssp TEEEEEETTSSEEEEECCTTCCEEEECCCCSC-TTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEE----ECCCE
T ss_pred cEEEEEcCCCCEEEEECCCCcEEEEeeeeecc-CCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceE----Eeeee
Confidence 4444444 89988888866655432 111 1111 123567889888877788899999998655210 11110
Q ss_pred c---C-------CcCCEEEEEecC--CEEEEEeC----------CCcEEEEeCCcccccCCCCCCCceeeeeecCCCccc
Q 009993 361 I---P-------HTGPVNSLAFEF--PWLVSAAG----------DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRM 418 (520)
Q Consensus 361 ~---~-------h~~~v~~l~~~~--~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (520)
. . .......+++++ +++++... ++.|.+.|..+...... +
T Consensus 305 ~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~------------------I 366 (426)
T 3c75_H 305 EALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINK------------------I 366 (426)
T ss_dssp ESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE------------------E
T ss_pred eeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEE------------------E
Confidence 0 0 001111245654 55555432 35799999988532211 1
Q ss_pred ccCcceeeEEEEecCC-EEEEec-CCCeEEEEeCCchHhHH
Q 009993 419 LHGFECNLLSVDIGAD-RIVCGG-EEGIVRIWNFSQAFEIE 457 (520)
Q Consensus 419 ~~~~~~~v~~~~~~~~-~l~sg~-~Dg~v~iwd~~~~~~~~ 457 (520)
.-+....-..++++++ +++++. .++.|.++|..+.+.++
T Consensus 367 ~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~ 407 (426)
T 3c75_H 367 ELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELR 407 (426)
T ss_dssp EEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred ECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEE
Confidence 1122344556777888 777777 59999999999886553
No 214
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.15 E-value=3.9e-09 Score=111.50 Aligned_cols=265 Identities=13% Similarity=0.013 Sum_probs=153.0
Q ss_pred ccCCCEEEEEeCCCe---EEEEECC-----CCcEEEEe------CCCCce--EEEEecCCCEEEEEeCC-----CcEEEE
Q 009993 151 LASAKLLFTSGYDSI---VRMWHLE-----DGFSIASS------KPLGCT--IRAVAADKKLLVAGGTD-----GFIHCW 209 (520)
Q Consensus 151 ~~~~~~l~sgs~dg~---v~vwd~~-----~~~~~~~~------~~~~~~--v~~~~~~~~~l~sg~~d-----g~i~vw 209 (520)
+|+|++++....++. -.+|... .+.....+ .+|... -.+++|||++|+.++.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 388988886665443 4556543 33322211 223222 34567999999877654 359999
Q ss_pred EcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCe--------------EEEEECCCCcE--EE
Q 009993 210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMT--------------VRVWDRALLKC--LK 271 (520)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~--------------v~iwd~~~~~~--~~ 271 (520)
|+.++... ....+...+..++| | +.|+.++.|+. |++|++.++.. ..
T Consensus 195 dl~tg~~~--------------~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~l 259 (741)
T 1yr2_A 195 GVADGKPL--------------ADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQP 259 (741)
T ss_dssp ETTTCCEE--------------EEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEE
T ss_pred ECCCCCCC--------------CccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEE
Confidence 99887421 11111111245677 6 78888776654 89999987652 22
Q ss_pred Eee---eccCEEEE--eeCCCEEEEEc-CC-----eEEEEECCCC--eeeEEeecccccceEEEEecCCCCEEEEEeCC-
Q 009993 272 VLR---HSDWVYGL--APHDTTVASTS-GS-----DVYIWDTNSG--CLLTVVNGAHVGNTKSLARSHTGDFLFTGGED- 337 (520)
Q Consensus 272 ~~~---~~~~v~~~--~~~~~~l~~~~-d~-----~i~iwd~~~~--~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d- 337 (520)
.+. +...+..+ +++|++++..+ ++ .|++||+.++ +....+.. +...+.... +|+|+.|+..+.+
T Consensus 260 v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~~~~~~-~~dg~~l~~~s~~~ 337 (741)
T 1yr2_A 260 VFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP-DLKAQWDFV-DGVGDQLWFVSGDG 337 (741)
T ss_dssp EECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC-SSSSCEEEE-EEETTEEEEEECTT
T ss_pred EeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC-CCCceEEEE-eccCCEEEEEECCC
Confidence 232 22345554 48998887766 44 7999999887 31444442 444444443 4889988877653
Q ss_pred ---CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecC
Q 009993 338 ---GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVE 413 (520)
Q Consensus 338 ---g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 413 (520)
+.|.+||+.++. . .....+..+...+..+.+.. .++++...|+..+||.+... +..
T Consensus 338 ~~~~~l~~~d~~~~~--~--~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~--------g~~-------- 397 (741)
T 1yr2_A 338 APLKKIVRVDLSGST--P--RFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLD--------GKP-------- 397 (741)
T ss_dssp CTTCEEEEEECSSSS--C--EEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETT--------SCE--------
T ss_pred CCCCEEEEEeCCCCc--c--ccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCC--------CCc--------
Confidence 459999987742 0 12222334455567777765 46777888998888765421 000
Q ss_pred CCcccccC-cceeeEEEE--ecCCEEE----EecCCCeEEEEeCCchH
Q 009993 414 PPQRMLHG-FECNLLSVD--IGADRIV----CGGEEGIVRIWNFSQAF 454 (520)
Q Consensus 414 ~~~~~~~~-~~~~v~~~~--~~~~~l~----sg~~Dg~v~iwd~~~~~ 454 (520)
...+.. ....+..++ ++++.|+ +....++|++||+.++.
T Consensus 398 --~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 398 --AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp --EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred --eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 011111 123344444 4555343 33456899999998764
No 215
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.15 E-value=1.1e-08 Score=96.95 Aligned_cols=227 Identities=11% Similarity=0.007 Sum_probs=150.4
Q ss_pred EEEEccCCCEEEEEe----------CCCeEEEEECCCCcEEEEeCC---------CCceEEEEecCCCEEEEEeC--CCc
Q 009993 147 TVFVLASAKLLFTSG----------YDSIVRMWHLEDGFSIASSKP---------LGCTIRAVAADKKLLVAGGT--DGF 205 (520)
Q Consensus 147 ~l~~~~~~~~l~sgs----------~dg~v~vwd~~~~~~~~~~~~---------~~~~v~~~~~~~~~l~sg~~--dg~ 205 (520)
.++++|||++++.++ .++.|.+||..+++.+.++.. ....-..++++|++++++.. ++.
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~ 161 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 161 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence 499999999888775 367899999999998887642 12344688899999998864 689
Q ss_pred EEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCC-CcEEEEee-e----ccC
Q 009993 206 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRAL-LKCLKVLR-H----SDW 278 (520)
Q Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~-~----~~~ 278 (520)
|.++|+.++. ....+.-. + ...+.- ....+++.+.||++.+.++.+ ++...... . ..+
T Consensus 162 VsVID~~t~~-------------vv~tI~v~-g-~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~ 226 (386)
T 3sjl_D 162 VGVVDLEGKA-------------FKRMLDVP-D-CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEF 226 (386)
T ss_dssp EEEEETTTTE-------------EEEEEECC-S-EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSC
T ss_pred EEEEECCCCc-------------EEEEEECC-C-cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccccc
Confidence 9999998763 22222111 1 111112 456788889999999999876 55432211 1 112
Q ss_pred EE---EEe-eCCCEEEEEcCCeEEEEECCCCe--eeEEee---------cccccceEEEEecCCCCEEEEEeC-------
Q 009993 279 VY---GLA-PHDTTVASTSGSDVYIWDTNSGC--LLTVVN---------GAHVGNTKSLARSHTGDFLFTGGE------- 336 (520)
Q Consensus 279 v~---~~~-~~~~~l~~~~d~~i~iwd~~~~~--~~~~~~---------~~~~~~i~~l~~s~~~~~l~tg~~------- 336 (520)
+. .+. +++++++++.+|.|++.|..++. ....+. .-..+....++++++++.++....
T Consensus 227 ~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~h 306 (386)
T 3sjl_D 227 LINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRH 306 (386)
T ss_dssp BCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCT
T ss_pred ccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccccccc
Confidence 21 233 57777777778999999997664 222221 001233445777999998887643
Q ss_pred ---CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--C-EEEEE-eCCCcEEEEeCCccc
Q 009993 337 ---DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P-WLVSA-AGDGKLSLIDVRKLL 395 (520)
Q Consensus 337 ---dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~-~l~s~-s~dg~i~vwd~~~~~ 395 (520)
.+.|.++|+.+. +.+.++..- ..+..|.+++ + +|++. ..++.|.++|..++.
T Consensus 307 k~~~~~V~viD~~t~------kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 307 KTASRFVVVLDAKTG------ERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp TSCEEEEEEEETTTC------CEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCEEEEEECCCC------eEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 256999999998 444444321 2577888865 3 66665 458999999998853
No 216
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.13 E-value=3.7e-11 Score=79.01 Aligned_cols=47 Identities=36% Similarity=0.470 Sum_probs=40.3
Q ss_pred cccccCCCHHHHHHHccCCChhhhHHHhhhhhhHHHhhcCcchhhhh
Q 009993 61 RSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEF 107 (520)
Q Consensus 61 ~~~~~~LP~el~~~i~~~L~~~~l~~~s~v~~~~~~~~~~~~lW~~~ 107 (520)
...+..||.|++.+||+||++.++.++++|||+|+.++.++.+|+.+
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 34589999999999999999999999999999999999999999864
No 217
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.12 E-value=4.6e-11 Score=114.95 Aligned_cols=182 Identities=13% Similarity=0.021 Sum_probs=101.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEE
Q 009993 153 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR 232 (520)
Q Consensus 153 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 232 (520)
++..+++++.||.|+.||..+|+.+..+.........+..++..+++++.||.|+.||..+++... ........
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w-~~~~~~~~----- 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLT-KLPFTIPE----- 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEECCCSCCCC-----CCEEECTTTCCEEEC-----CCSE-ECSCCHHH-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecCCCceecceEcCCCEEEEeCCCCEEEEEECCCCceee-eeeccCcc-----
Confidence 578899999999999999999999888765111111123567778888899999999998774311 00000000
Q ss_pred eccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEe
Q 009993 233 LWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVV 311 (520)
Q Consensus 233 ~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~ 311 (520)
. ....++. .+++.+++++.|+.|+.||..+|+.+..+..... ....+++..+++++ ++.|+.||.++|+.+..+
T Consensus 82 ~-~~~sp~~---~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~-~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 82 L-VQASPCR---SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA-DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNA 156 (369)
T ss_dssp H-HTTCSCC--------CCCCEEEEEEEEECCC-----------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred c-cccCceE---ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc-ccccccCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence 0 0111111 1456788899999999999999998877763332 22345777777777 899999999999887766
Q ss_pred ecccccceEEEEecCCC---CEEEEEeCCCeEEEEEcccC
Q 009993 312 NGAHVGNTKSLARSHTG---DFLFTGGEDGAIHMYEIIND 348 (520)
Q Consensus 312 ~~~~~~~i~~l~~s~~~---~~l~tg~~dg~i~iwd~~~~ 348 (520)
.. +. .....+.++. ..+++++.||.|+.||..++
T Consensus 157 ~~-~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 157 TY-FD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG 193 (369)
T ss_dssp EE-EE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred ec-cc--ccCccccCCccccceEEEECCCCEEEEEECCCC
Confidence 42 11 1223333332 56778899999999999988
No 218
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.10 E-value=1.7e-07 Score=87.07 Aligned_cols=212 Identities=10% Similarity=-0.020 Sum_probs=131.5
Q ss_pred ccEEEEEEccC-CCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeec
Q 009993 143 EAVLTVFVLAS-AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDI 221 (520)
Q Consensus 143 ~~V~~l~~~~~-~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 221 (520)
.---+..|+|+ +.++++...++.|..||..++..............++.++++++++ . ++.|.+||..++....+
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~-- 88 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVL-- 88 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEE--
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEE--
Confidence 34457789985 5566677778999999998876532222222333445588885544 4 56799999876642211
Q ss_pred cCCccccceEEec--cCCCCeEEEEE--cCCEEEEEecC---------CeEEEEECCC-CcEEEEeeeccCEEEEe--eC
Q 009993 222 SGSEKQNTQFRLW--EHEGPITSLAL--DLTRIYSGSWD---------MTVRVWDRAL-LKCLKVLRHSDWVYGLA--PH 285 (520)
Q Consensus 222 ~~~~~~~~~~~~~--~h~~~v~~l~~--~~~~l~s~s~d---------g~v~iwd~~~-~~~~~~~~~~~~v~~~~--~~ 285 (520)
.... .....+.++++ +++..++...+ ..-.+|.+.. ++...........+.+. ++
T Consensus 89 ---------~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spd 159 (297)
T 3g4e_A 89 ---------ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLD 159 (297)
T ss_dssp ---------EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTT
T ss_pred ---------EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCC
Confidence 1110 11234678888 55655443221 2234554432 34333333333344444 78
Q ss_pred CCEEEEE-c-CCeEEEEEC--CCCeee--EEee--cccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeee
Q 009993 286 DTTVAST-S-GSDVYIWDT--NSGCLL--TVVN--GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV 357 (520)
Q Consensus 286 ~~~l~~~-~-d~~i~iwd~--~~~~~~--~~~~--~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~ 357 (520)
++.++.+ + ++.|.+||+ .++... ..+. ..+.+.+..+++.++|++.++...++.|.+||..++ +.+
T Consensus 160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG------~~~ 233 (297)
T 3g4e_A 160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG------KRL 233 (297)
T ss_dssp SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC------CEE
T ss_pred CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc------eEE
Confidence 8866554 4 689999987 455431 1111 123456789999999998888888889999999877 556
Q ss_pred eeecCCcCCEEEEEec
Q 009993 358 ATWIPHTGPVNSLAFE 373 (520)
Q Consensus 358 ~~~~~h~~~v~~l~~~ 373 (520)
..+..+...+++++|.
T Consensus 234 ~~i~~p~~~~t~~~f~ 249 (297)
T 3g4e_A 234 QTVKLPVDKTTSCCFG 249 (297)
T ss_dssp EEEECSSSBEEEEEEE
T ss_pred EEEECCCCCceEEEEe
Confidence 6666666789999996
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.05 E-value=4.9e-07 Score=85.17 Aligned_cols=215 Identities=13% Similarity=0.022 Sum_probs=129.8
Q ss_pred cEEEEEEccC-CCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeecc
Q 009993 144 AVLTVFVLAS-AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS 222 (520)
Q Consensus 144 ~V~~l~~~~~-~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 222 (520)
-..+..|+|+ +.++++...++.|..||..+++..............+.++++++++. .+ .|.+||..++....+.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~-- 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA-- 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE--
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe--
Confidence 3467789997 45666777789999999988764322222222223345788766654 44 4889998766422110
Q ss_pred CCccccceEEec--cCCCCeEEEEE--cCCEEEEEec------CCeEEEEECCCCcEEEEeeeccCEEEE--eeCCCEEE
Q 009993 223 GSEKQNTQFRLW--EHEGPITSLAL--DLTRIYSGSW------DMTVRVWDRALLKCLKVLRHSDWVYGL--APHDTTVA 290 (520)
Q Consensus 223 ~~~~~~~~~~~~--~h~~~v~~l~~--~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~~~~v~~~--~~~~~~l~ 290 (520)
... .....+.++.+ +++..++... .+.|..+| +++.............+ +++++.++
T Consensus 126 ---------~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~ly 194 (326)
T 2ghs_A 126 ---------ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGY 194 (326)
T ss_dssp ---------CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEE
T ss_pred ---------eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEE
Confidence 000 11235778888 4555554432 24566666 45543333333344454 47887665
Q ss_pred EEc--CCeEEEEECC--CC-ee-----eEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeee
Q 009993 291 STS--GSDVYIWDTN--SG-CL-----LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW 360 (520)
Q Consensus 291 ~~~--d~~i~iwd~~--~~-~~-----~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~ 360 (520)
.+. ++.|.+||+. ++ .. ...+. .....+..+++.++|.+.++...++.|.+||. ++ ..+..+
T Consensus 195 v~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~-~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g------~~~~~i 266 (326)
T 2ghs_A 195 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDST-GIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG------NHIARY 266 (326)
T ss_dssp EEETTTCEEEEEEBCTTTCCBSSCCEEEEECT-TSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC------CEEEEE
T ss_pred EEECCCCEEEEEEcccccCCcccCceEEEECC-CCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CC------CEEEEE
Confidence 554 6899999986 55 31 12221 23455678999999998877777789999998 34 334445
Q ss_pred cCCcCCEEEEEec-C--CEEEEEe
Q 009993 361 IPHTGPVNSLAFE-F--PWLVSAA 381 (520)
Q Consensus 361 ~~h~~~v~~l~~~-~--~~l~s~s 381 (520)
..+...+++++|+ + +.|+.++
T Consensus 267 ~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 267 EVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp ECSCSBEEEEEEESTTSCEEEEEE
T ss_pred ECCCCCcEEEEEecCCCCEEEEEe
Confidence 5556679999996 4 4554443
No 220
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.04 E-value=7.9e-08 Score=99.82 Aligned_cols=236 Identities=12% Similarity=0.141 Sum_probs=148.9
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeCCC-C----ceEE-EEecCCCEEEEEeC------CCcEEEEEcccCcceeee
Q 009993 153 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPL-G----CTIR-AVAADKKLLVAGGT------DGFIHCWRAVEVLPHLFD 220 (520)
Q Consensus 153 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~-~----~~v~-~~~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~ 220 (520)
++..|+.++.|+.|..+|..+|+.+..+... . ..+. .....+..+++++. +|.|..+|..+++.. +.
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~-W~ 205 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERK-WR 205 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE-EE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEE-EE
Confidence 3667888999999999999999998877644 1 1111 01122455666553 689999999988642 21
Q ss_pred ccCCcccc--------------------ceEEeccCCCCeEEEEE--cCCEEEEEecCC-------------------eE
Q 009993 221 ISGSEKQN--------------------TQFRLWEHEGPITSLAL--DLTRIYSGSWDM-------------------TV 259 (520)
Q Consensus 221 ~~~~~~~~--------------------~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg-------------------~v 259 (520)
........ ......+.......+++ +++.++.++.++ +|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 11100000 00000011111224455 567888777664 59
Q ss_pred EEEECCCCcEEEEee---ec--------cCE-EEEeeCC---CEEEEEc-CCeEEEEECCCCeeeEEeeccccc------
Q 009993 260 RVWDRALLKCLKVLR---HS--------DWV-YGLAPHD---TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVG------ 317 (520)
Q Consensus 260 ~iwd~~~~~~~~~~~---~~--------~~v-~~~~~~~---~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~------ 317 (520)
..+|.++++.+..+. +. .++ .....+| ..++.++ +|.++++|..+|+.+..+......
T Consensus 286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d 365 (677)
T 1kb0_A 286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD 365 (677)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC
T ss_pred EEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccC
Confidence 999999999988876 21 112 2223466 5777777 899999999999988776522111
Q ss_pred ----ce------------------------EEEEecCCCCEEEEEeCC--------------------------------
Q 009993 318 ----NT------------------------KSLARSHTGDFLFTGGED-------------------------------- 337 (520)
Q Consensus 318 ----~i------------------------~~l~~s~~~~~l~tg~~d-------------------------------- 337 (520)
++ ..++++|++.++++...+
T Consensus 366 ~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~ 445 (677)
T 1kb0_A 366 KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKF 445 (677)
T ss_dssp TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEE
T ss_pred CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccc
Confidence 01 146888988888875432
Q ss_pred -----------CeEEEEEcccCccccceeeeeeecCCcCCEEE--EEecCCEEEEEeCCCcEEEEeCCcccc
Q 009993 338 -----------GAIHMYEIINDCTEANVLLVATWIPHTGPVNS--LAFEFPWLVSAAGDGKLSLIDVRKLLR 396 (520)
Q Consensus 338 -----------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~--l~~~~~~l~s~s~dg~i~vwd~~~~~~ 396 (520)
|.|..||+.++ +.+..... ..++.. +...+..++.++.||.+++||..++..
T Consensus 446 ~~~~~~~~~~~g~l~A~D~~tG------~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 446 FNAEPPKSKPFGRLLAWDPVAQ------KAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK 510 (677)
T ss_dssp ECSSCCCSCCEEEEEEEETTTT------EEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cccccCCCCCccEEEEEeCCCC------cEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence 77999999988 44444332 222222 334567889999999999999998643
No 221
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.03 E-value=7.8e-08 Score=100.04 Aligned_cols=236 Identities=11% Similarity=0.074 Sum_probs=146.3
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeCCC--Cc---eEE--EEecCCCEEEEEe------CCCcEEEEEcccCcceeee
Q 009993 154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPL--GC---TIR--AVAADKKLLVAGG------TDGFIHCWRAVEVLPHLFD 220 (520)
Q Consensus 154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~--~~---~v~--~~~~~~~~l~sg~------~dg~i~vwd~~~~~~~~~~ 220 (520)
+..|+.++.|+.|..+|..+|+.+..+... .. .+. -+..++ .+++++ .+|.|..||..+|+.. +.
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~-W~ 198 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEA-WR 198 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEE-EE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEE-EE
Confidence 567888999999999999999988776532 10 110 011234 445543 3689999999998642 21
Q ss_pred ccC-C-ccccc-----e----EEe--------ccCCCCeEEEEE--cCCEEEEEecCCe-------------------EE
Q 009993 221 ISG-S-EKQNT-----Q----FRL--------WEHEGPITSLAL--DLTRIYSGSWDMT-------------------VR 260 (520)
Q Consensus 221 ~~~-~-~~~~~-----~----~~~--------~~h~~~v~~l~~--~~~~l~s~s~dg~-------------------v~ 260 (520)
... . ..... . ... .++......+++ +.+.++.++.++. |.
T Consensus 199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~ 278 (689)
T 1yiq_A 199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV 278 (689)
T ss_dssp EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 110 0 00000 0 000 011111124556 4578888887764 99
Q ss_pred EEECCCCcEEEEeee---c-------cCEE--EEeeCCC---EEEEEc-CCeEEEEECCCCeeeEEeecccccc------
Q 009993 261 VWDRALLKCLKVLRH---S-------DWVY--GLAPHDT---TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGN------ 318 (520)
Q Consensus 261 iwd~~~~~~~~~~~~---~-------~~v~--~~~~~~~---~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~------ 318 (520)
.+|.++++.+..+.. . .... .+..+++ .++.++ +|.++++|.++|+.+..........
T Consensus 279 AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~ 358 (689)
T 1yiq_A 279 AVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDM 358 (689)
T ss_dssp EEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEET
T ss_pred EEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCc
Confidence 999999999887762 1 1111 2224554 677777 8999999999999875443211000
Q ss_pred --------------------------------eEEEEecCCCCEEEEEeC------------------------------
Q 009993 319 --------------------------------TKSLARSHTGDFLFTGGE------------------------------ 336 (520)
Q Consensus 319 --------------------------------i~~l~~s~~~~~l~tg~~------------------------------ 336 (520)
-..++++|+..++++...
T Consensus 359 ~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 438 (689)
T 1yiq_A 359 KTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGM 438 (689)
T ss_dssp TTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECC
T ss_pred cCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccc
Confidence 112678888888877532
Q ss_pred ---------------CCeEEEEEcccCccccceeeeeeecCCcCCE-EEEEecCCEEEEEeCCCcEEEEeCCccccc
Q 009993 337 ---------------DGAIHMYEIINDCTEANVLLVATWIPHTGPV-NSLAFEFPWLVSAAGDGKLSLIDVRKLLRS 397 (520)
Q Consensus 337 ---------------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v-~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~ 397 (520)
+|.|+.||+.++ +.+.....+.... -.+.-.+..++.|+.||.|+.||.+++...
T Consensus 439 ~p~~~~~~~~~~~~~~g~l~A~D~~tG------~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 439 MPEGAEGLLEMAKSWSGKLIAWDPVKQ------QAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp CCSSHHHHHHHHTTCEEEEEEEETTTT------EEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cCcccccCCCCCCCcceeEEEEECCCC------CeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 377999999998 4454443333221 133446789999999999999999986433
No 222
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.99 E-value=6.8e-11 Score=113.76 Aligned_cols=183 Identities=11% Similarity=0.069 Sum_probs=101.1
Q ss_pred EcCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEE--eeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEE
Q 009993 245 LDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGL--APHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKS 321 (520)
Q Consensus 245 ~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~ 321 (520)
.+++.+++++.||.|+.||..+++.+..+.. ..+.+. ..++..+++++ |+.|+.||..+|+.+..+.......+.+
T Consensus 7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 7 LPETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp -CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eeCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 4788999999999999999999999888775 444332 25666777766 9999999999998877664221111110
Q ss_pred -EEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCC
Q 009993 322 -LARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRP 400 (520)
Q Consensus 322 -l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 400 (520)
..+. .+..+++|+.|+.|+.||..++ +.+..+..+.. +. ..-+...+++++.|+.|+.||.+++......
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG------~~~w~~~~~~~-~~-~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTG------EKQQTLSSAFA-DS-LSPSTSLLYLGRTEYTITMYDTKTRELRWNA 156 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC------------------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCC------cEEEEecCCCc-cc-ccccCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence 1111 3557888889999999999998 44444443321 11 1114578899999999999999886432210
Q ss_pred CCCCceeeeeecCCCcccccCcceeeEEEEec---CCEEEEecCCCeEEEEeCCchHhH
Q 009993 401 TSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG---ADRIVCGGEEGIVRIWNFSQAFEI 456 (520)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~sg~~Dg~v~iwd~~~~~~~ 456 (520)
. ...... ..+..+ ...+++++.||.|+.||..+++.+
T Consensus 157 ~-----------------~~~~~~--~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 157 T-----------------YFDYAA--SLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL 196 (369)
T ss_dssp E-----------------EEEECC--BCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred e-----------------cccccC--ccccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence 0 000000 111111 146777888999999999887653
No 223
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.96 E-value=2.2e-07 Score=86.68 Aligned_cols=223 Identities=14% Similarity=0.105 Sum_probs=134.1
Q ss_pred hccccccEEEEEEccCCC-EEEEEeCCCeEEEEECCCCcEEEEeCCCCc--eEEEEecCCCEEEEEeCCCcEEEEEcccC
Q 009993 138 LYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSKPLGC--TIRAVAADKKLLVAGGTDGFIHCWRAVEV 214 (520)
Q Consensus 138 l~~h~~~V~~l~~~~~~~-~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~l~sg~~dg~i~vwd~~~~ 214 (520)
+..+........|+|+|+ +++++..++.|..|+. +++. ..+..+.. .-.++.++++++++...++.|.+|+.. +
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g 116 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G 116 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence 444455667889999998 6777778899999998 4442 33322223 334555888866665566789999874 3
Q ss_pred cceeeeccCCccccceEEecc-CCCCeEEEEE--cCCEEEE----Eec-------------CCeEEEEECCCCcEEEEee
Q 009993 215 LPHLFDISGSEKQNTQFRLWE-HEGPITSLAL--DLTRIYS----GSW-------------DMTVRVWDRALLKCLKVLR 274 (520)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~--~~~~l~s----~s~-------------dg~v~iwd~~~~~~~~~~~ 274 (520)
....+. ....+ ....+.++++ +++..++ |.. .+.|..+|..+++.....
T Consensus 117 ~~~~~~----------~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~- 185 (305)
T 3dr2_A 117 QAHLLV----------GRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA- 185 (305)
T ss_dssp CEEEEE----------CEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-
T ss_pred CEEEEE----------eccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-
Confidence 211110 00111 1234566777 5666665 332 256888887766654433
Q ss_pred eccCEEE--EeeCCCEEEEEc-C------CeEEEEECCCCee--eEEeecccccceEEEEecCCCCEEEEEeCCCeEEEE
Q 009993 275 HSDWVYG--LAPHDTTVASTS-G------SDVYIWDTNSGCL--LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY 343 (520)
Q Consensus 275 ~~~~v~~--~~~~~~~l~~~~-d------~~i~iwd~~~~~~--~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iw 343 (520)
....... ++++++.++.+. . +.|.+||+..+.. ...+.....+....+++.++|++.+ +..+ .|.+|
T Consensus 186 ~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~ 263 (305)
T 3dr2_A 186 DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGT-GVCVF 263 (305)
T ss_dssp EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSS-EEEEE
T ss_pred cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCC-cEEEE
Confidence 3333344 458888777665 4 6899999876541 1112111234456788999999544 4444 49999
Q ss_pred EcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCC
Q 009993 344 EIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDG 384 (520)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg 384 (520)
+.... .+..+..+. .+.+++|++ +.|+.++.++
T Consensus 264 ~~~g~-------~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 264 DSDGQ-------LLGHIPTPG-TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp CTTSC-------EEEEEECSS-CCCEEEECTTSCEEEEEETTE
T ss_pred CCCCC-------EEEEEECCC-ceeEEEEeCCCCEEEEEcCCe
Confidence 97433 344444333 578889954 5777777664
No 224
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.96 E-value=6.9e-07 Score=80.16 Aligned_cols=192 Identities=13% Similarity=-0.015 Sum_probs=131.8
Q ss_pred cEEEEEEccCCCEEEEEeC--CCeEEEEECCCCcEEEEeCC-CCceEEEEecCCCEEEEEe-CCCcEEEEEcccCcceee
Q 009993 144 AVLTVFVLASAKLLFTSGY--DSIVRMWHLEDGFSIASSKP-LGCTIRAVAADKKLLVAGG-TDGFIHCWRAVEVLPHLF 219 (520)
Q Consensus 144 ~V~~l~~~~~~~~l~sgs~--dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~~~~ 219 (520)
....++|++++.++++.+. ++.|++.|+.+++.+..+.- .......+..+++.|+.+. .++.+.++|..+..
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~---- 97 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLS---- 97 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTE----
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCc----
Confidence 3578999998755555443 68999999999999888642 1122224454566665554 57899999987753
Q ss_pred eccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEeeec---c---CEEEEe-eCCCEEEEE
Q 009993 220 DISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHS---D---WVYGLA-PHDTTVAST 292 (520)
Q Consensus 220 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~---~---~v~~~~-~~~~~l~~~ 292 (520)
....+......-..++.+++.++++..+++|.++|..+.+.+..+.-. . .++.+. .++..++..
T Consensus 98 ---------v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~ 168 (266)
T 2iwa_A 98 ---------NIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANI 168 (266)
T ss_dssp ---------EEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred ---------EEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEec
Confidence 222221111222457778887777777899999999999988887621 1 245555 355444444
Q ss_pred c-CCeEEEEECCCCeeeEEeeccc------------ccceEEEEecCCCCE-EEEEeCCCeEEEEEcccC
Q 009993 293 S-GSDVYIWDTNSGCLLTVVNGAH------------VGNTKSLARSHTGDF-LFTGGEDGAIHMYEIIND 348 (520)
Q Consensus 293 ~-d~~i~iwd~~~~~~~~~~~~~~------------~~~i~~l~~s~~~~~-l~tg~~dg~i~iwd~~~~ 348 (520)
. ++.|.+.|+.+++.+..+..+. ....+.++|+|+++. ++++...+.+.+.++...
T Consensus 169 ~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 169 WQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp TTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 4 7899999999999988886421 135689999999875 555667889999988765
No 225
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.93 E-value=5e-07 Score=91.71 Aligned_cols=185 Identities=12% Similarity=0.073 Sum_probs=117.8
Q ss_pred CCEEEEEeC-CCeEEEEEC-CCCcEEEEeCCCCc-e----------EEEEecCCCEEEEEeCCCcEEEEEcccCcceeee
Q 009993 154 AKLLFTSGY-DSIVRMWHL-EDGFSIASSKPLGC-T----------IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD 220 (520)
Q Consensus 154 ~~~l~sgs~-dg~v~vwd~-~~~~~~~~~~~~~~-~----------v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 220 (520)
+..++.++. ++.|.-+|. .+|+.+..+..... . .......+..++.++.|+.|..+|..+++.. +.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~-W~ 140 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKIN-WE 140 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEE-EE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCCEE-EE
Confidence 556777777 899999999 99999887653221 0 0112234678888999999999999888532 11
Q ss_pred ccCCccccceEEeccCC--CCeE-EEEEcCCEEEEEec------CCeEEEEECCCCcEEEEeeeccC-------------
Q 009993 221 ISGSEKQNTQFRLWEHE--GPIT-SLALDLTRIYSGSW------DMTVRVWDRALLKCLKVLRHSDW------------- 278 (520)
Q Consensus 221 ~~~~~~~~~~~~~~~h~--~~v~-~l~~~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~~~~------------- 278 (520)
. ....+. ..+. +-...++.++.++. ++.|..+|.++++.+..+.....
T Consensus 141 ~----------~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~ 210 (571)
T 2ad6_A 141 V----------EVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSA 210 (571)
T ss_dssp E----------ECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred e----------cCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccc
Confidence 1 111110 0111 11123556666665 79999999999999887762211
Q ss_pred ----------------------------EEEEeeCCCEEEEEc-C----------------CeEEEEECCCCeeeEEeec
Q 009993 279 ----------------------------VYGLAPHDTTVASTS-G----------------SDVYIWDTNSGCLLTVVNG 313 (520)
Q Consensus 279 ----------------------------v~~~~~~~~~l~~~~-d----------------~~i~iwd~~~~~~~~~~~~ 313 (520)
..++.+....++.+. + +.|..+|.++|+.+..+..
T Consensus 211 ~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~ 290 (571)
T 2ad6_A 211 NPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQK 290 (571)
T ss_dssp CGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEES
T ss_pred cccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecC
Confidence 123444555666554 2 2599999999999888763
Q ss_pred cc-c--------cceEEEEecCCCC---EEEEEeCCCeEEEEEcccCcc
Q 009993 314 AH-V--------GNTKSLARSHTGD---FLFTGGEDGAIHMYEIINDCT 350 (520)
Q Consensus 314 ~~-~--------~~i~~l~~s~~~~---~l~tg~~dg~i~iwd~~~~~~ 350 (520)
.+ . .++ -+...++|+ .++.++.+|.++++|..+++.
T Consensus 291 ~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 338 (571)
T 2ad6_A 291 TPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL 338 (571)
T ss_dssp STTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCE
T ss_pred CCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCE
Confidence 22 1 122 122234674 577889999999999988843
No 226
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.93 E-value=1.1e-08 Score=96.57 Aligned_cols=262 Identities=12% Similarity=0.007 Sum_probs=154.6
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeee
Q 009993 141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD 220 (520)
Q Consensus 141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 220 (520)
+...+.++...+++. |+.++.+ |..+|. +++.+..+.............+..++.++.++.|..+|.. +..
T Consensus 58 ~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~---- 128 (330)
T 3hxj_A 58 GEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIFEDILYVTSMDGHLYAINTD-GTE---- 128 (330)
T ss_dssp GGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEETTEEEEECTTSEEEEECTT-SCE----
T ss_pred CCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEECCEEEEEecCCEEEEEcCC-CCE----
Confidence 344567777766665 5555555 888885 6655544432222111111126678888889999999876 421
Q ss_pred ccCCccccceEEeccCCCCeEEEEEc-CCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEcCCe
Q 009993 221 ISGSEKQNTQFRLWEHEGPITSLALD-LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTSGSD 296 (520)
Q Consensus 221 ~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~d~~ 296 (520)
......+...+.++..+ ...++.++.++.|..+|.. ++....+. ....+.++. .++.++ .++ +.
T Consensus 129 ---------~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~-v~t-~~ 196 (330)
T 3hxj_A 129 ---------KWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIY-FGS-DK 196 (330)
T ss_dssp ---------EEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEE-EES-SS
T ss_pred ---------EEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEE-EEe-CE
Confidence 11222233344555554 5668888888999999998 77766665 233344444 455544 445 89
Q ss_pred EEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEec-CC
Q 009993 297 VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE-FP 375 (520)
Q Consensus 297 i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~ 375 (520)
|..+| .+++....... ....+.++...++|. |..++.++.+..+|. ++ ..+..+......+..+..+ ..
T Consensus 197 l~~~d-~~g~~~~~~~~-~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g------~~~~~~~~~~~~~~~~~~~~~g 266 (330)
T 3hxj_A 197 VYAIN-PDGTEKWNFYA-GYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DG------TEKWRFKTGKRIESSPVIGNTD 266 (330)
T ss_dssp EEEEC-TTSCEEEEECC-SSCCCSCCEECTTSC-EEEEETTTEEEEECT-TS------CEEEEEECSSCCCSCCEECTTS
T ss_pred EEEEC-CCCcEEEEEcc-CCcceeceEECCCCe-EEEEcCCCeEEEECC-CC------CEeEEeeCCCCccccceEcCCC
Confidence 99999 77777666652 445677888887775 555667888888874 33 2233333333333445555 56
Q ss_pred EEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEe-cCCEEEEecCCCeEEEEeCCch
Q 009993 376 WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI-GADRIVCGGEEGIVRIWNFSQA 453 (520)
Q Consensus 376 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~sg~~Dg~v~iwd~~~~ 453 (520)
.|..++.+|.|..+|. ++.... . .......+.++.. .+..|..|+.+|.+++...+..
T Consensus 267 ~l~v~t~~ggl~~~d~-~g~~~~---------~----------~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 267 TIYFGSYDGHLYAINP-DGTEKW---------N----------FETGSWIIATPVIDENGTIYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp CEEEECTTCEEEEECT-TSCEEE---------E----------EECSSCCCSCCEECTTCCEEEECTTSCEEEEEC---
T ss_pred eEEEecCCCCEEEECC-CCcEEE---------E----------EEcCCccccceEEcCCCEEEEEcCCCeEEEEecccc
Confidence 8888999989999985 321110 0 0001112223333 2336777899999999877643
No 227
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.93 E-value=2e-07 Score=90.76 Aligned_cols=237 Identities=10% Similarity=0.011 Sum_probs=135.3
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCC--eEEEEE
Q 009993 188 RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM--TVRVWD 263 (520)
Q Consensus 188 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg--~v~iwd 263 (520)
.++.++++++++...++.|++||..++... .+........ +++ +++.|+++..++ .|.+++
T Consensus 136 la~d~~g~lyv~d~~~~~I~~id~~~g~~~--------------~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d 200 (409)
T 3hrp_A 136 IAAVGNNTVLAYQRDDPRVRLISVDDNKVT--------------TVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYM 200 (409)
T ss_dssp EEECSTTEEEEEETTTTEEEEEETTTTEEE--------------EEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEE
T ss_pred EEEeCCCCEEEEecCCCcEEEEECCCCEEE--------------EeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEE
Confidence 455588887777777899999998765321 1111112222 666 667888888766 899999
Q ss_pred CCCCcEEEEe----e-eccCEEEE--eeCCCEEEEEc-CCeEEEEECCCCeeeEEe---ecccccce-E-EEEecCC-CC
Q 009993 264 RALLKCLKVL----R-HSDWVYGL--APHDTTVASTS-GSDVYIWDTNSGCLLTVV---NGAHVGNT-K-SLARSHT-GD 329 (520)
Q Consensus 264 ~~~~~~~~~~----~-~~~~v~~~--~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~---~~~~~~~i-~-~l~~s~~-~~ 329 (520)
...+.....+ . ....+.++ .+++..|+.+. ++.|+.||..++.....- ..++...- . .++|+|+ +.
T Consensus 201 ~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ 280 (409)
T 3hrp_A 201 KASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN 280 (409)
T ss_dssp GGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE
T ss_pred cCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE
Confidence 8776554444 2 22333444 46344455555 789999999877643220 11222222 3 8999995 55
Q ss_pred EEEEEeCCCeEEEEEcccCccccceeeeeeecCC---------------cCCEEEEEecC--CEEEEEe-CCCcEEEEeC
Q 009993 330 FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH---------------TGPVNSLAFEF--PWLVSAA-GDGKLSLIDV 391 (520)
Q Consensus 330 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h---------------~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~ 391 (520)
++++-..++.|+.|+.... +..+.++ -.....+++++ .++++-+ .++.|+.|++
T Consensus 281 lyv~d~~~~~I~~~~~~g~--------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~ 352 (409)
T 3hrp_A 281 FYMSDQNLSSVYKITPDGE--------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDI 352 (409)
T ss_dssp EEEEETTTTEEEEECTTCC--------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEET
T ss_pred EEEEeCCCCEEEEEecCCC--------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEEC
Confidence 5666667889999987643 1111111 23578999976 5666666 7899999997
Q ss_pred CcccccCCCCC-CCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCC
Q 009993 392 RKLLRSGRPTS-GKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFS 451 (520)
Q Consensus 392 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~ 451 (520)
.++........ +... .. ........-....-.++++++.++++-..++.|+.++++
T Consensus 353 ~~G~v~~~~g~~~~~g--~~--~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 353 LDGYVSTVAGQVDVAS--QI--DGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp TTTEEEEEEECTTCBS--CC--CBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred CCCEEEEEeCCCCCCC--cC--CCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 55421100000 0000 00 000000000112234555555577787888888887753
No 228
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.92 E-value=1.2e-06 Score=81.21 Aligned_cols=185 Identities=10% Similarity=0.049 Sum_probs=115.8
Q ss_pred EEecC-CCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECC
Q 009993 189 AVAAD-KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRA 265 (520)
Q Consensus 189 ~~~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~ 265 (520)
.+.++ +.++++...++.|..||..++.. ........+.++++ +++ ++.+. ++.|.+||..
T Consensus 19 ~w~~~~~~l~~~d~~~~~i~~~d~~~~~~---------------~~~~~~~~~~~i~~~~dG~-l~v~~-~~~l~~~d~~ 81 (297)
T 3g4e_A 19 VWEEVSNSLLFVDIPAKKVCRWDSFTKQV---------------QRVTMDAPVSSVALRQSGG-YVATI-GTKFCALNWK 81 (297)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTCCE---------------EEEECSSCEEEEEEBTTSS-EEEEE-TTEEEEEETT
T ss_pred eEECCCCEEEEEECCCCEEEEEECCCCcE---------------EEEeCCCceEEEEECCCCC-EEEEE-CCeEEEEECC
Confidence 44554 45666667789999999876531 11123467889999 556 44444 5689999998
Q ss_pred CCcEEEEeee-----ccCEEEEe--eCCCEEEEEc-C-----------CeEEEEECCCCeeeEEeecccccceEEEEecC
Q 009993 266 LLKCLKVLRH-----SDWVYGLA--PHDTTVASTS-G-----------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH 326 (520)
Q Consensus 266 ~~~~~~~~~~-----~~~v~~~~--~~~~~l~~~~-d-----------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~ 326 (520)
+++....... ...++.+. ++++++++.. . +.|+.+|.. ++... +. ......+.++|+|
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~-~~~~~pngi~~sp 158 (297)
T 3g4e_A 82 EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YF-DQVDISNGLDWSL 158 (297)
T ss_dssp TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EE-EEESBEEEEEECT
T ss_pred CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-Ee-eccccccceEEcC
Confidence 8765443331 12355554 7888777653 2 245555543 33322 22 2445678999999
Q ss_pred CCCEEE-EEeCCCeEEEEEcc--cCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993 327 TGDFLF-TGGEDGAIHMYEII--NDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 327 ~~~~l~-tg~~dg~i~iwd~~--~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~ 394 (520)
+++.|+ +.+.++.|.+|++. ++. .........+..+.+.+..+++++ ++.++...++.|.+||..++
T Consensus 159 dg~~lyv~~~~~~~i~~~~~d~~~G~-~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG 230 (297)
T 3g4e_A 159 DHKIFYYIDSLSYSVDAFDYDLQTGQ-ISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG 230 (297)
T ss_dssp TSCEEEEEEGGGTEEEEEEECTTTCC-EEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC
T ss_pred CCCEEEEecCCCCcEEEEeccCCCCc-ccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc
Confidence 998765 55567899999984 332 111122333444456678899965 56666667788999998763
No 229
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.90 E-value=2e-07 Score=96.70 Aligned_cols=189 Identities=14% Similarity=0.038 Sum_probs=122.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeCCCCce-----------EEEEecCCCEEEEEeCCCcEEEEEcccCcceeeecc
Q 009993 154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT-----------IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS 222 (520)
Q Consensus 154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~-----------v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 222 (520)
+..|+.++.++.|.-+|..+|+.+.++...... .......+..++.++.|+.|..+|..+|+.. +...
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~-W~~~ 144 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAI-WSQQ 144 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEE-EEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEe-eeec
Confidence 567788888999999999999998887543210 0112224678888999999999999988632 1111
Q ss_pred CCccccceEEeccCCCCeEEEEEcCCEEEEEec------CCeEEEEECCCCcEEEEeeec--cC----------------
Q 009993 223 GSEKQNTQFRLWEHEGPITSLALDLTRIYSGSW------DMTVRVWDRALLKCLKVLRHS--DW---------------- 278 (520)
Q Consensus 223 ~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~~--~~---------------- 278 (520)
...... .......+ .+.++.++.+.. +|.|..+|.++++.+..+... .+
T Consensus 145 ~~~~~~---~~~~~~~P----~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~ 217 (668)
T 1kv9_A 145 TTDPAK---PYSITGAP----RVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTW 217 (668)
T ss_dssp CSCTTS---SCBCCSCC----EEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTC
T ss_pred cCCCCC---cceecCCC----EEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccC
Confidence 100000 00001111 123556666653 589999999999998877521 00
Q ss_pred ----------------EEEEeeCCCEEEEEc-CC-------------------eEEEEECCCCeeeEEeecc-cc-----
Q 009993 279 ----------------VYGLAPHDTTVASTS-GS-------------------DVYIWDTNSGCLLTVVNGA-HV----- 316 (520)
Q Consensus 279 ----------------v~~~~~~~~~l~~~~-d~-------------------~i~iwd~~~~~~~~~~~~~-~~----- 316 (520)
..++.+...+++.+. ++ .|..+|.++|+.+..+... |.
T Consensus 218 ~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~ 297 (668)
T 1kv9_A 218 QGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFT 297 (668)
T ss_dssp CSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred CccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcccccc
Confidence 124446677777776 54 3999999999999887643 22
Q ss_pred --cceEEEEecCCCC---EEEEEeCCCeEEEEEcccCcc
Q 009993 317 --GNTKSLARSHTGD---FLFTGGEDGAIHMYEIINDCT 350 (520)
Q Consensus 317 --~~i~~l~~s~~~~---~l~tg~~dg~i~iwd~~~~~~ 350 (520)
.+.....+..+|+ .++.++.+|.++++|..+++.
T Consensus 298 ~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 336 (668)
T 1kv9_A 298 ATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL 336 (668)
T ss_dssp CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence 2233333334665 688999999999999998853
No 230
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.88 E-value=1.7e-08 Score=95.23 Aligned_cols=214 Identities=9% Similarity=0.003 Sum_probs=134.0
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEec-CCCEEEEEeCCCcEEEEEcccCcceeeeccCCcc
Q 009993 148 VFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAA-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEK 226 (520)
Q Consensus 148 l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~ 226 (520)
..+..++ .|+.++.++.|..|| .+++.+.........+.++.. .+..++.++.+ |..+|. ++.. .+.
T Consensus 25 ~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~-~~~------ 92 (330)
T 3hxj_A 25 PILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTE-KWR------ 92 (330)
T ss_dssp CEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECC-CGGG-GGG------
T ss_pred ceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc--EEEECC-CCcE-EEE------
Confidence 3444455 467777888899999 888877665544444455543 34566666655 878875 3321 100
Q ss_pred ccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEcCCeEEEEECC
Q 009993 227 QNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTSGSDVYIWDTN 303 (520)
Q Consensus 227 ~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~d~~i~iwd~~ 303 (520)
+...........+.++.++.++.++.|..+|.. ++...... ....+.++. .++.+++.+.++.|..+|..
T Consensus 93 ------~~~~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~ 165 (330)
T 3hxj_A 93 ------FDTKKAIVSDFTIFEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD 165 (330)
T ss_dssp ------SCC-----CCEEEETTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT
T ss_pred ------EECCCCcccCceEECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC
Confidence 000111122223347788889989999999998 77666655 222233333 45555444447999999999
Q ss_pred CCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCC-EEEEEeC
Q 009993 304 SGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP-WLVSAAG 382 (520)
Q Consensus 304 ~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s~ 382 (520)
++....+.. ....+.++...+++.++ .++ +.|..+| .++ ............+.++..+++ .|..++.
T Consensus 166 -g~~~~~~~~-~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g------~~~~~~~~~~~~~~~~~~~~~g~l~v~t~ 233 (330)
T 3hxj_A 166 -GTEKWRFKT-NDAITSAASIGKDGTIY-FGS--DKVYAIN-PDG------TEKWNFYAGYWTVTRPAISEDGTIYVTSL 233 (330)
T ss_dssp -SCEEEEEEC-SSCCCSCCEECTTCCEE-EES--SSEEEEC-TTS------CEEEEECCSSCCCSCCEECTTSCEEEEET
T ss_pred -CCEeEEEec-CCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCC------cEEEEEccCCcceeceEECCCCeEEEEcC
Confidence 877766652 34456677777777754 444 7799999 555 334444444456778888764 8888888
Q ss_pred CCcEEEEeCC
Q 009993 383 DGKLSLIDVR 392 (520)
Q Consensus 383 dg~i~vwd~~ 392 (520)
++.|..+|..
T Consensus 234 ~~gl~~~~~~ 243 (330)
T 3hxj_A 234 DGHLYAINPD 243 (330)
T ss_dssp TTEEEEECTT
T ss_pred CCeEEEECCC
Confidence 8889888753
No 231
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.87 E-value=2.1e-07 Score=89.98 Aligned_cols=227 Identities=10% Similarity=-0.004 Sum_probs=148.4
Q ss_pred EEEEccCCCEEEEEe----------CCCeEEEEECCCCcEEEEeCC---------CCceEEEEecCCCEEEEEeC--CCc
Q 009993 147 TVFVLASAKLLFTSG----------YDSIVRMWHLEDGFSIASSKP---------LGCTIRAVAADKKLLVAGGT--DGF 205 (520)
Q Consensus 147 ~l~~~~~~~~l~sgs----------~dg~v~vwd~~~~~~~~~~~~---------~~~~v~~~~~~~~~l~sg~~--dg~ 205 (520)
.++++|||++|+.+. .++.|.++|..+++.+.++.- ....-..+++++++++++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 799999999888876 367899999999998877642 12233578899999999874 578
Q ss_pred EEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEE----ee-eccCE
Q 009993 206 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKV----LR-HSDWV 279 (520)
Q Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~----~~-~~~~v 279 (520)
|.+.|+.+.. ....+.-. + ...+.. ....+++.+.||.+.+.+..+++.... +. ...++
T Consensus 202 VsVID~~t~k-------------vv~~I~v~-g-~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~ 266 (426)
T 3c75_H 202 VGVVDLEGKT-------------FDRMLDVP-D-CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELL 266 (426)
T ss_dssp EEEEETTTTE-------------EEEEEECC-S-EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCB
T ss_pred EEEEECCCCe-------------EEEEEEcC-C-ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCce
Confidence 9999998763 22222211 1 112222 336677788899988888866655432 11 11111
Q ss_pred ---EEEeeCCCEEEEEc-CCeEEEEECCCCeee--EEeecc---------cccceEEEEecCCCCEEEEEeC--------
Q 009993 280 ---YGLAPHDTTVASTS-GSDVYIWDTNSGCLL--TVVNGA---------HVGNTKSLARSHTGDFLFTGGE-------- 336 (520)
Q Consensus 280 ---~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~--~~~~~~---------~~~~i~~l~~s~~~~~l~tg~~-------- 336 (520)
..+.+++..++... .+.|.+.|...+... ..+... .......++++|+++.+++...
T Consensus 267 ~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk 346 (426)
T 3c75_H 267 INHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHK 346 (426)
T ss_dssp CSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTT
T ss_pred eeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccccccc
Confidence 13356666665555 789999998765421 111100 1112223689999987777642
Q ss_pred --CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--C-EEEEEe-CCCcEEEEeCCccc
Q 009993 337 --DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P-WLVSAA-GDGKLSLIDVRKLL 395 (520)
Q Consensus 337 --dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~-~l~s~s-~dg~i~vwd~~~~~ 395 (520)
++.|.++|..+. +.+.++... .....+.|++ + ++++.. .++.|.|+|+.+..
T Consensus 347 ~~s~~VsVID~~T~------kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 347 AASRFVVVLNAETG------ERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp SCEEEEEEEETTTC------CEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCEEEEEECCCC------eEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 357999999998 455554322 2478888865 5 788887 58999999999853
No 232
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.86 E-value=5.7e-07 Score=83.83 Aligned_cols=182 Identities=14% Similarity=0.108 Sum_probs=112.1
Q ss_pred EEecCCC-EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECC
Q 009993 189 AVAADKK-LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRA 265 (520)
Q Consensus 189 ~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~ 265 (520)
.+.++++ +++++..++.|..|+. ++. ...+..+...+..+++ +++.+++...++.|..||..
T Consensus 51 ~~~~~g~~l~~~d~~~~~i~~~~~-~g~--------------~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 51 AWWEAQRTLVWSDLVGRRVLGWRE-DGT--------------VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD 115 (305)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEET-TSC--------------EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred eEeCCCCEEEEEECCCCEEEEEeC-CCC--------------EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence 4567777 6677777899999986 331 2233345567888998 55655544456789999986
Q ss_pred CCcEEEEeee-----ccCEEEE--eeCCCEEEE----Ec--------------CCeEEEEECCCCeeeEEeecccccceE
Q 009993 266 LLKCLKVLRH-----SDWVYGL--APHDTTVAS----TS--------------GSDVYIWDTNSGCLLTVVNGAHVGNTK 320 (520)
Q Consensus 266 ~~~~~~~~~~-----~~~v~~~--~~~~~~l~~----~~--------------d~~i~iwd~~~~~~~~~~~~~~~~~i~ 320 (520)
++....... ...+..+ .++|+++++ +. .+.|+.+|..+++..... ......
T Consensus 116 -g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~~p~ 191 (305)
T 3dr2_A 116 -GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLDHPN 191 (305)
T ss_dssp -SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EESSEE
T ss_pred -CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCCCCc
Confidence 554332221 1223333 478888876 32 256888888776544332 334567
Q ss_pred EEEecCCCCEEEEEeCC------CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-CEEEEEeCCCcEEEEeCCc
Q 009993 321 SLARSHTGDFLFTGGED------GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 321 ~l~~s~~~~~l~tg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~ 393 (520)
.++|+|+++.|+.+... +.|.+|++.... ......... ...+.+..+.+++ ..|.+++.+| |.+|+...
T Consensus 192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~--~~~~~pdgi~~d~~G~lwv~~~~g-v~~~~~~g 267 (305)
T 3dr2_A 192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFAS--VPDGLPDGFCVDRGGWLWSSSGTG-VCVFDSDG 267 (305)
T ss_dssp EEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEEC--CSSSCCCSEEECTTSCEEECCSSE-EEEECTTS
T ss_pred ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEE--CCCCCCCeEEECCCCCEEEecCCc-EEEECCCC
Confidence 89999999988777665 789999987653 111111111 1233456677765 2355555554 99998753
No 233
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.85 E-value=2.1e-06 Score=87.10 Aligned_cols=188 Identities=11% Similarity=0.027 Sum_probs=119.7
Q ss_pred CCEEEEEeC-CCeEEEEEC-CCCcEEEEeCCCCc-------------eEEEEecCCCE----EEEEeCCCcEEEEEcccC
Q 009993 154 AKLLFTSGY-DSIVRMWHL-EDGFSIASSKPLGC-------------TIRAVAADKKL----LVAGGTDGFIHCWRAVEV 214 (520)
Q Consensus 154 ~~~l~sgs~-dg~v~vwd~-~~~~~~~~~~~~~~-------------~v~~~~~~~~~----l~sg~~dg~i~vwd~~~~ 214 (520)
+..|+.++. ++.|.-+|. .+|+.+..+..... .-..+.+.+.. ++.++.|+.|..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 556777777 899999999 89999887754321 01133224444 888999999999999988
Q ss_pred cceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEe------cCCeEEEEECCCCcEEEEeeeccC----------
Q 009993 215 LPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS------WDMTVRVWDRALLKCLKVLRHSDW---------- 278 (520)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~~~~---------- 278 (520)
+.. +.......... ......+ .+.++.++.++ .++.|+.+|.++++.+..+.....
T Consensus 142 ~~~-W~~~~~~~~~~---~~~~ssP----~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~ 213 (599)
T 1w6s_A 142 ETV-WKVENSDIKVG---STLTIAP----YVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDF 213 (599)
T ss_dssp CEE-EEEECCCGGGT---CBCCSCC----EEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTT
T ss_pred CEE-EeecCCCCCcc---ceeecCC----EEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccc
Confidence 632 11110000000 0001111 12345666665 389999999999999887762211
Q ss_pred -------------------------------EEEEeeCCCEEEEEc-C----------------CeEEEEECCCCeeeEE
Q 009993 279 -------------------------------VYGLAPHDTTVASTS-G----------------SDVYIWDTNSGCLLTV 310 (520)
Q Consensus 279 -------------------------------v~~~~~~~~~l~~~~-d----------------~~i~iwd~~~~~~~~~ 310 (520)
..++.+...+++.+. + +.|..+|.++|+.+..
T Consensus 214 ~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~ 293 (599)
T 1w6s_A 214 NIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFG 293 (599)
T ss_dssp TTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEE
T ss_pred ccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeE
Confidence 123445666777766 4 3799999999999888
Q ss_pred eecccc---------cceEEEEec-CCC---CEEEEEeCCCeEEEEEcccCcc
Q 009993 311 VNGAHV---------GNTKSLARS-HTG---DFLFTGGEDGAIHMYEIINDCT 350 (520)
Q Consensus 311 ~~~~~~---------~~i~~l~~s-~~~---~~l~tg~~dg~i~iwd~~~~~~ 350 (520)
+...+. .++. +... .+| ..++.++.+|.++++|..+++.
T Consensus 294 ~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 345 (599)
T 1w6s_A 294 YQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL 345 (599)
T ss_dssp EESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred eecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCE
Confidence 764332 1122 2222 467 4677889999999999988854
No 234
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.84 E-value=1.8e-06 Score=76.42 Aligned_cols=178 Identities=12% Similarity=0.097 Sum_probs=123.7
Q ss_pred EEEEEEccCCCEEEEEeCCC--eEEEEECCCCcEEEEeCCCCc-eEEEEecCCCEEEEEe-CCCcEEEEEcccCcceeee
Q 009993 145 VLTVFVLASAKLLFTSGYDS--IVRMWHLEDGFSIASSKPLGC-TIRAVAADKKLLVAGG-TDGFIHCWRAVEVLPHLFD 220 (520)
Q Consensus 145 V~~l~~~~~~~~l~sgs~dg--~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~ 220 (520)
...+.|+ ++.++.+++.+| .|+++|+.+++.+....-... .-..+.++++.|+... .++.+.++|..+..
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~----- 118 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR----- 118 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCC-----
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCc-----
Confidence 4788898 677777777766 899999999999887753322 1233555566666655 47899999987763
Q ss_pred ccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEeee---c---cCEEEEe-eCCCEEEEEc
Q 009993 221 ISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRH---S---DWVYGLA-PHDTTVASTS 293 (520)
Q Consensus 221 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~---~---~~v~~~~-~~~~~l~~~~ 293 (520)
...++.-. ..=..++.+++.|+....++.|.++|..+.+.+..+.- . ..++.+. .++...+...
T Consensus 119 --------~~~ti~~~-~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w 189 (262)
T 3nol_A 119 --------QVRSFNYD-GEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVW 189 (262)
T ss_dssp --------EEEEEECS-SCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEET
T ss_pred --------EEEEEECC-CCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEc
Confidence 22222211 12246667888887777788999999999999888762 1 2334455 4565554444
Q ss_pred -CCeEEEEECCCCeeeEEeeccc-----------ccceEEEEecCCCCEEEEEeCC
Q 009993 294 -GSDVYIWDTNSGCLLTVVNGAH-----------VGNTKSLARSHTGDFLFTGGED 337 (520)
Q Consensus 294 -d~~i~iwd~~~~~~~~~~~~~~-----------~~~i~~l~~s~~~~~l~tg~~d 337 (520)
++.|.+.|+++++.+..+.... ..-.+.++++|+++.|++.+..
T Consensus 190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 7899999999999988886320 1356899999988877766553
No 235
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.82 E-value=1.9e-07 Score=88.77 Aligned_cols=223 Identities=9% Similarity=-0.035 Sum_probs=140.0
Q ss_pred hhhhccccccEEEEEEccCCCEEEEEe----------CCCeEEEEECCCCcEEEEeCC---------CCceEEEEecCCC
Q 009993 135 IDVLYGHTEAVLTVFVLASAKLLFTSG----------YDSIVRMWHLEDGFSIASSKP---------LGCTIRAVAADKK 195 (520)
Q Consensus 135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs----------~dg~v~vwd~~~~~~~~~~~~---------~~~~v~~~~~~~~ 195 (520)
+.++..-..+ .+.++||+++++.+. .+++|.+||+.+++.+.++.. ....-..++|+|+
T Consensus 59 ~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk 136 (368)
T 1mda_H 59 LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA 136 (368)
T ss_dssp EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS
T ss_pred EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCC
Confidence 3444333345 799999999998886 378999999999999988742 2344568899999
Q ss_pred EEEEEeC--CCcEEE--EEcccCcceeeeccC----------------CccccceEEecc------------------CC
Q 009993 196 LLVAGGT--DGFIHC--WRAVEVLPHLFDISG----------------SEKQNTQFRLWE------------------HE 237 (520)
Q Consensus 196 ~l~sg~~--dg~i~v--wd~~~~~~~~~~~~~----------------~~~~~~~~~~~~------------------h~ 237 (520)
+++++.. +..|.+ +|..+ . ......+ .........+.. ..
T Consensus 137 ~lyVan~~~~~~v~V~~iD~~t-v-~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~ 214 (368)
T 1mda_H 137 CLLFFLFGSSAAAGLSVPGASD-D-QLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSS 214 (368)
T ss_dssp CEEEEECSSSCEEEEEETTTEE-E-EEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCS
T ss_pred EEEEEccCCCCeEEEEEEchhh-c-eEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCC
Confidence 9998875 467888 88865 1 1111100 000000000000 01
Q ss_pred CCeEEEEEcCCEEEEEecCCeEEEEECCCCc--EEEEee-------------eccCEEEEeeCCCEEEEEc--C------
Q 009993 238 GPITSLALDLTRIYSGSWDMTVRVWDRALLK--CLKVLR-------------HSDWVYGLAPHDTTVASTS--G------ 294 (520)
Q Consensus 238 ~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~-------------~~~~v~~~~~~~~~l~~~~--d------ 294 (520)
.+. . ..++..++..+. +.|.+.|..+.. .+..+. .......+.++++.++++. .
T Consensus 215 ~P~-~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~ 291 (368)
T 1mda_H 215 QAA-Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLA 291 (368)
T ss_dssp CCE-E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTS
T ss_pred Ccc-c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccc
Confidence 111 1 114455555555 888888886532 222221 1112246778888777643 2
Q ss_pred --CeEEEEECCCCeeeEEeecccccceEEEEecCCCC-EEEEEe-CCCeEEEEEcccCccccceeeeeeecCCcCCEEEE
Q 009993 295 --SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD-FLFTGG-EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL 370 (520)
Q Consensus 295 --~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~-~l~tg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l 370 (520)
+.+.++|+.+++.+..+..+ .....++|+|+|+ .+++.. .++.|.++|+.+. +.+.++..... ...+
T Consensus 292 ~~~~~~ViD~~t~~vv~~i~vg--~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~------kvv~~I~vg~~-P~~i 362 (368)
T 1mda_H 292 AAENTSSVTASVGQTSGPISNG--HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD------QDQSSVELDKG-PESL 362 (368)
T ss_dssp CEEEEEEEESSSCCEEECCEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEESSSC------EEEEECCCCSC-CCEE
T ss_pred cCCCEEEEECCCCeEEEEEECC--CCcceEEECCCCCEEEEEccCCCCeEEEEECCCC------cEEEEEECCCC-CCEE
Confidence 35779999999998888643 3688999999998 566666 5999999999999 66666654443 3455
Q ss_pred Eec
Q 009993 371 AFE 373 (520)
Q Consensus 371 ~~~ 373 (520)
++.
T Consensus 363 ~~~ 365 (368)
T 1mda_H 363 SVQ 365 (368)
T ss_dssp ECC
T ss_pred Eee
Confidence 543
No 236
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.82 E-value=1.7e-06 Score=76.58 Aligned_cols=178 Identities=13% Similarity=0.136 Sum_probs=122.2
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEE-eCCCcEEEEEcccCcceeeecc
Q 009993 144 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAG-GTDGFIHCWRAVEVLPHLFDIS 222 (520)
Q Consensus 144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg-~~dg~i~vwd~~~~~~~~~~~~ 222 (520)
-...+.|+ ++.+.++.+.+|.|+++|+++++.+..+.+....-..+.++++.|+.. -.++.+.++|..+..
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~------- 127 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQ------- 127 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTE-------
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCc-------
Confidence 34688887 466777888889999999999988777622221223355555555544 457899999987763
Q ss_pred CCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEeee---c---cCEEEEe-eCCCEEEEEc-C
Q 009993 223 GSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRH---S---DWVYGLA-PHDTTVASTS-G 294 (520)
Q Consensus 223 ~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~---~---~~v~~~~-~~~~~l~~~~-d 294 (520)
...++.. ...-..++.+++.|+.+..++.|.++|..+.+.+..+.- . ..++.+. .++.+++... +
T Consensus 128 ------~~~ti~~-~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s 200 (268)
T 3nok_A 128 ------RERTTRY-SGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHS 200 (268)
T ss_dssp ------EEEEEEC-SSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTC
T ss_pred ------EEEEEeC-CCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCC
Confidence 2222221 222356778898888888889999999999999888862 1 2345555 4665554444 7
Q ss_pred CeEEEEECCCCeeeEEeecc------------cccceEEEEecCCCCEEEEEeC
Q 009993 295 SDVYIWDTNSGCLLTVVNGA------------HVGNTKSLARSHTGDFLFTGGE 336 (520)
Q Consensus 295 ~~i~iwd~~~~~~~~~~~~~------------~~~~i~~l~~s~~~~~l~tg~~ 336 (520)
+.|.+.|+++++.+..+..+ ...-.+.++++|+++.|++.+.
T Consensus 201 ~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 201 SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 89999999999998888632 1135689999997665554433
No 237
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.79 E-value=1e-05 Score=76.02 Aligned_cols=182 Identities=12% Similarity=-0.012 Sum_probs=112.7
Q ss_pred EEecC-CCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECC
Q 009993 189 AVAAD-KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRA 265 (520)
Q Consensus 189 ~~~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~ 265 (520)
.++++ +.++++...++.|..||..++.. ..+ .....+.++.+ ++++++ ++.+ .|.+||..
T Consensus 55 ~~~~~~~~l~~~d~~~~~i~~~d~~~~~~--------------~~~-~~~~~v~~i~~~~dg~l~v-~~~~-gl~~~d~~ 117 (326)
T 2ghs_A 55 TFDPASGTAWWFNILERELHELHLASGRK--------------TVH-ALPFMGSALAKISDSKQLI-ASDD-GLFLRDTA 117 (326)
T ss_dssp EEETTTTEEEEEEGGGTEEEEEETTTTEE--------------EEE-ECSSCEEEEEEEETTEEEE-EETT-EEEEEETT
T ss_pred eEeCCCCEEEEEECCCCEEEEEECCCCcE--------------EEE-ECCCcceEEEEeCCCeEEE-EECC-CEEEEECC
Confidence 45665 44666666788999999876531 111 12457888888 444444 4544 59999998
Q ss_pred CCcEEEEeee-----ccCEEEEe--eCCCEEEEEcC-------CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEE
Q 009993 266 LLKCLKVLRH-----SDWVYGLA--PHDTTVASTSG-------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFL 331 (520)
Q Consensus 266 ~~~~~~~~~~-----~~~v~~~~--~~~~~l~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 331 (520)
+++....... ...+..+. ++++++++..+ +.|..+| +++... +. .+......++|+|+++.+
T Consensus 118 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~-~~~~~~~~i~~s~dg~~l 193 (326)
T 2ghs_A 118 TGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LF-ADISIPNSICFSPDGTTG 193 (326)
T ss_dssp TCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EE-EEESSEEEEEECTTSCEE
T ss_pred CCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-ee-CCCcccCCeEEcCCCCEE
Confidence 8876443321 12456655 77887766542 4577777 454433 22 234457789999999876
Q ss_pred EEE-eCCCeEEEEEcc--cC-ccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCC
Q 009993 332 FTG-GEDGAIHMYEII--ND-CTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR 392 (520)
Q Consensus 332 ~tg-~~dg~i~iwd~~--~~-~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~ 392 (520)
+.+ +.++.|.+||+. ++ .. ........+......+..+.+++ .+.++...++.|.+||..
T Consensus 194 yv~~~~~~~I~~~d~~~~~Gl~~-~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 194 YFVDTKVNRLMRVPLDARTGLPT-GKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp EEEETTTCEEEEEEBCTTTCCBS-SCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred EEEECCCCEEEEEEcccccCCcc-cCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence 554 557899999986 33 21 11122233333445677888865 455555567889999874
No 238
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.78 E-value=1.5e-07 Score=89.53 Aligned_cols=227 Identities=9% Similarity=0.039 Sum_probs=131.6
Q ss_pred ccEEEEEEccCCCEEEEEe--CCCeEEEEECCCCcEEEEeC-------CCCceEEEEe--cCCCEEEEEeC-----CCcE
Q 009993 143 EAVLTVFVLASAKLLFTSG--YDSIVRMWHLEDGFSIASSK-------PLGCTIRAVA--ADKKLLVAGGT-----DGFI 206 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~sgs--~dg~v~vwd~~~~~~~~~~~-------~~~~~v~~~~--~~~~~l~sg~~-----dg~i 206 (520)
..+..++++++|+++++.. .++.++||.+.+++. ..+. .+-..+..+. ++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6789999999999988864 234366666655543 3332 2233455554 66665555433 5789
Q ss_pred EEEEcccCcc-eeeeccCCccccceEEeccCCCCeEEEEEc--CCEE-EEEe---cCCeEEEEECCCCcEEEEee-eccC
Q 009993 207 HCWRAVEVLP-HLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRI-YSGS---WDMTVRVWDRALLKCLKVLR-HSDW 278 (520)
Q Consensus 207 ~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l-~s~s---~dg~v~iwd~~~~~~~~~~~-~~~~ 278 (520)
.+||+.++.. ..+.+... ...+...+..++++ +..+ ++.+ .++.|.+||..+++....+. |...
T Consensus 96 ~~~d~~tg~~~~~~~~~~~--------~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~ 167 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPP--------ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGI 167 (343)
T ss_dssp EEEETTTTEEEEEEECCTT--------TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTT
T ss_pred EEEECCCCeEEEEEECChh--------hcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcc
Confidence 9999887641 11111100 00223456788885 3455 4444 67899999999888766653 2111
Q ss_pred E---EEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCC-eEEEEEcccCcc--c
Q 009993 279 V---YGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG-AIHMYEIINDCT--E 351 (520)
Q Consensus 279 v---~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg-~i~iwd~~~~~~--~ 351 (520)
. ..+..++..+.+.. ++.+..|. ..+..++++|+++.|+.+..++ .+..++...... .
T Consensus 168 ~~~~~~~~~~g~~~~~~~~~g~~~~~~---------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~ 232 (343)
T 2qe8_A 168 APEDIDLVIDGVPVQIGQPDGTVIRPH---------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQL 232 (343)
T ss_dssp SCCSCCCEETTEECBEECTTSCEECCC---------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTC
T ss_pred cccccceeECCEEEEeccCCCceecee---------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCC
Confidence 0 22334565555555 56554442 2357899999999888887766 455554321100 0
Q ss_pred cceeeee--eecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993 352 ANVLLVA--TWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 352 ~~~~~~~--~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 393 (520)
....... ...++.+....+++++ .++++...++.|.+||..+
T Consensus 233 ~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~ 278 (343)
T 2qe8_A 233 TDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSAD 278 (343)
T ss_dssp CHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTT
T ss_pred ChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCC
Confidence 0000000 1113334556778865 6777777889999999833
No 239
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.78 E-value=2.6e-06 Score=76.44 Aligned_cols=188 Identities=15% Similarity=0.076 Sum_probs=129.3
Q ss_pred EEEecCCCEEEEEeC--CCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEe-cCCeEEEEEC
Q 009993 188 RAVAADKKLLVAGGT--DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS-WDMTVRVWDR 264 (520)
Q Consensus 188 ~~~~~~~~~l~sg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s-~dg~v~iwd~ 264 (520)
..+++++.+.++.+. ++.|.++|..++... ....+.. ......++++++.|+.+. .++.+.++|.
T Consensus 26 l~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~-----------~~i~l~~-~~fgeGi~~~g~~lyv~t~~~~~v~viD~ 93 (266)
T 2iwa_A 26 LVYAENDTLFESTGLYGRSSVRQVALQTGKVE-----------NIHKMDD-SYFGEGLTLLNEKLYQVVWLKNIGFIYDR 93 (266)
T ss_dssp EEECSTTEEEEEECSTTTCEEEEEETTTCCEE-----------EEEECCT-TCCEEEEEEETTEEEEEETTCSEEEEEET
T ss_pred EEEeCCCeEEEECCCCCCCEEEEEECCCCCEE-----------EEEecCC-CcceEEEEEeCCEEEEEEecCCEEEEEEC
Confidence 345566544444433 579999999887421 1111112 223345777777766655 5789999999
Q ss_pred CCCcEEEEeeec-cCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccc----cceEEEEecCCCCEEEEEeCCC
Q 009993 265 ALLKCLKVLRHS-DWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHV----GNTKSLARSHTGDFLFTGGEDG 338 (520)
Q Consensus 265 ~~~~~~~~~~~~-~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~----~~i~~l~~s~~~~~l~tg~~dg 338 (520)
.+.+.+.++... ..-..+.++++.++++. ++.|.++|..+.+.+..+.-+.. ..++.+.|. +|...+....++
T Consensus 94 ~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~ 172 (266)
T 2iwa_A 94 RTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTD 172 (266)
T ss_dssp TTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSS
T ss_pred CCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCC
Confidence 999999998754 44456888888777777 78999999999988888764321 236788887 675555555688
Q ss_pred eEEEEEcccCccccceeeeeeecC-------------CcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcc
Q 009993 339 AIHMYEIINDCTEANVLLVATWIP-------------HTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~-------------h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~ 394 (520)
.|.+.|..++. .+..+.- .....+.|+|++ ..++++...+.|.+.++...
T Consensus 173 ~V~vID~~tg~------V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 173 CIARISAKDGT------LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEEETTTCC------EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred eEEEEECCCCc------EEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 99999999984 3333321 113668999986 36777778899999998763
No 240
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.74 E-value=7.2e-06 Score=83.32 Aligned_cols=189 Identities=10% Similarity=-0.048 Sum_probs=114.4
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeCCCCce---------EEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCC
Q 009993 154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT---------IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGS 224 (520)
Q Consensus 154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~ 224 (520)
+..++.++.++.|.-+|..+|+.+.++...... .......+..++.++.|+.|..+|..+|+..- .....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W-~~~~~ 146 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVW-KKKFA 146 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEE-EEECS
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEe-eecCC
Confidence 445666666445999999999998777533210 01112346778889999999999999886421 11100
Q ss_pred ccccceEEeccCCCCeEEEEEcC----C-EEEEEec------CCeEEEEECCCCcEEEEeeeccC---------------
Q 009993 225 EKQNTQFRLWEHEGPITSLALDL----T-RIYSGSW------DMTVRVWDRALLKCLKVLRHSDW--------------- 278 (520)
Q Consensus 225 ~~~~~~~~~~~h~~~v~~l~~~~----~-~l~s~s~------dg~v~iwd~~~~~~~~~~~~~~~--------------- 278 (520)
..... ......++ ..++ + .+++++. ++.|..+|..+++.+........
T Consensus 147 ~~~~~---~~~~~sP~---v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~ 220 (582)
T 1flg_A 147 DHGAG---YTMTGAPT---IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGD 220 (582)
T ss_dssp CGGGT---CBCCSCCE---EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSC
T ss_pred CCCcC---cccccCCE---EeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccc
Confidence 00000 00011121 1222 2 6666653 78999999999998876542110
Q ss_pred -----------------------------EEEEeeCCCEEEEEc---------------------C----CeEEEEECCC
Q 009993 279 -----------------------------VYGLAPHDTTVASTS---------------------G----SDVYIWDTNS 304 (520)
Q Consensus 279 -----------------------------v~~~~~~~~~l~~~~---------------------d----~~i~iwd~~~ 304 (520)
..++.+...+++.+. | +.|..+|.++
T Consensus 221 ~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~T 300 (582)
T 1flg_A 221 VKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSS 300 (582)
T ss_dssp TTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTT
T ss_pred cccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCC
Confidence 012334556666544 1 5799999999
Q ss_pred CeeeEEeecc-cc--------cceEEEEec-CCCC---EEEEEeCCCeEEEEEcccCcc
Q 009993 305 GCLLTVVNGA-HV--------GNTKSLARS-HTGD---FLFTGGEDGAIHMYEIINDCT 350 (520)
Q Consensus 305 ~~~~~~~~~~-~~--------~~i~~l~~s-~~~~---~l~tg~~dg~i~iwd~~~~~~ 350 (520)
|+.+..+... |. .++. +... .+|+ .++.++.+|.++++|..+++.
T Consensus 301 G~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 358 (582)
T 1flg_A 301 GEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKL 358 (582)
T ss_dssp CCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCE
Confidence 9999887643 21 1221 2222 4674 788899999999999988853
No 241
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.73 E-value=1.1e-05 Score=70.87 Aligned_cols=179 Identities=18% Similarity=0.133 Sum_probs=121.8
Q ss_pred ccEEEEEEccCCCEEEEEeCC--CeEEEEECCCCcEEEEeCCCCc-eEEEEecCCCEEEE-EeCCCcEEEEEcccCccee
Q 009993 143 EAVLTVFVLASAKLLFTSGYD--SIVRMWHLEDGFSIASSKPLGC-TIRAVAADKKLLVA-GGTDGFIHCWRAVEVLPHL 218 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~sgs~d--g~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~l~s-g~~dg~i~vwd~~~~~~~~ 218 (520)
.-...+.|++ +.++.+.+.+ ..|+++|+.+++.+....-... .-..+...++.|+. .-.++.+.++|..+..
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~--- 96 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLT--- 96 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTE---
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCc---
Confidence 3466888985 5666666665 4899999999999887753221 11234444555554 4467899999987753
Q ss_pred eeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEeeec------cCEEEEe-eCCCEEEE
Q 009993 219 FDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHS------DWVYGLA-PHDTTVAS 291 (520)
Q Consensus 219 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~------~~v~~~~-~~~~~l~~ 291 (520)
...++... ..=..++.++..|+.+..++.|.++|..+.+.+..+.-. ..++.+. .+++.++.
T Consensus 97 ----------~~~ti~~~-~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyan 165 (243)
T 3mbr_X 97 ----------PRARFRYP-GEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLAN 165 (243)
T ss_dssp ----------EEEEEECS-SCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEE
T ss_pred ----------EEEEEeCC-CCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEE
Confidence 22222221 222567788877777777899999999999998888621 3455566 45555544
Q ss_pred Ec-CCeEEEEECCCCeeeEEeecc------------cccceEEEEecCCCCEEEEEeC
Q 009993 292 TS-GSDVYIWDTNSGCLLTVVNGA------------HVGNTKSLARSHTGDFLFTGGE 336 (520)
Q Consensus 292 ~~-d~~i~iwd~~~~~~~~~~~~~------------~~~~i~~l~~s~~~~~l~tg~~ 336 (520)
.- +..|.+.|+++++.+..+..+ ...-.+.++++|+++.|++.+.
T Consensus 166 vw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 166 VWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp ETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred ECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 44 789999999999998887632 1235689999998776665554
No 242
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.70 E-value=5.7e-07 Score=85.42 Aligned_cols=248 Identities=8% Similarity=0.009 Sum_probs=146.2
Q ss_pred eEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEe----------CCCcEEEEEcccCcceeeeccCCccccceEEec
Q 009993 165 IVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGG----------TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW 234 (520)
Q Consensus 165 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 234 (520)
+|.+.|..+++.+.++.....+-..++|+++.++++. .++.|.+||..++.. ...+.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v-------------v~~I~ 113 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-------------IADIE 113 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-------------EEEEE
T ss_pred eEEEEECCCCeEEEEEeCCCCCceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE-------------EEEEE
Confidence 8889999999999988643334577889999998886 368899999988642 22221
Q ss_pred cC-------CCCeEEEEE--cCCEEEEEec--CCeEEE--EECCCCcEEEEeeeccCEEEEeeCCC-EEEEEc-CCeEEE
Q 009993 235 EH-------EGPITSLAL--DLTRIYSGSW--DMTVRV--WDRALLKCLKVLRHSDWVYGLAPHDT-TVASTS-GSDVYI 299 (520)
Q Consensus 235 ~h-------~~~v~~l~~--~~~~l~s~s~--dg~v~i--wd~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~-d~~i~i 299 (520)
-+ ......+.+ |+++++++.. +..|.+ +|..+ +..+..... ..+.+++. .+++.+ |+.+.+
T Consensus 114 v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~-~~~~p~g~~~~~~~~~dg~~~~ 189 (368)
T 1mda_H 114 LPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC-FHIHPGAAATHYLGSCPASLAA 189 (368)
T ss_dssp ETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC-CCCEEEETTEEECCCCTTSCEE
T ss_pred CCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc-eEEccCCCeEEEEEcCCCCEEE
Confidence 11 012334566 7888888864 467888 99877 444542222 12334433 333444 888888
Q ss_pred EECCC-----CeeeE----EeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecC-------C
Q 009993 300 WDTNS-----GCLLT----VVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP-------H 363 (520)
Q Consensus 300 wd~~~-----~~~~~----~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------h 363 (520)
.|+.+ ++... .+.. ...+. . .+++..++..+. +.+.+.|+..... ..+..+.- +
T Consensus 190 vd~~~~~~~~~~v~~~~t~~i~v-g~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~----~v~~~~~~~~~~~~~~ 259 (368)
T 1mda_H 190 SDLAAAPAAAGIVGAQCTGAQNC-SSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGA----TMKAAIDGNESGRKAD 259 (368)
T ss_dssp EECCSSCCCCEECCCCSCTTSCB-CSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCC----EEECCCCSSCTHHHHT
T ss_pred EECccccccCCeEEEEeeeeeeC-CCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcc----eEEEEEEecccccccc
Confidence 99887 44321 1111 12233 3 566666666666 9999999865421 11111110 0
Q ss_pred ---cCCEEEEEecC--CEEEEEeC---------CCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEE
Q 009993 364 ---TGPVNSLAFEF--PWLVSAAG---------DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSV 429 (520)
Q Consensus 364 ---~~~v~~l~~~~--~~l~s~s~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 429 (520)
......+.+++ ++++.+.. ++.+.++|+.+...... +.-+....-..+
T Consensus 260 ~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~------------------i~vg~~p~gi~~ 321 (368)
T 1mda_H 260 NFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP------------------ISNGHDSDAIIA 321 (368)
T ss_dssp TEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC------------------CEEEEEECEEEE
T ss_pred ccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEE------------------EECCCCcceEEE
Confidence 01111145644 55655432 23566999988532211 111222344566
Q ss_pred EecCC-EEEEec-CCCeEEEEeCCchHhHH
Q 009993 430 DIGAD-RIVCGG-EEGIVRIWNFSQAFEIE 457 (520)
Q Consensus 430 ~~~~~-~l~sg~-~Dg~v~iwd~~~~~~~~ 457 (520)
+++++ .+++.. .++.|.++|+.+.+.++
T Consensus 322 s~Dg~~l~va~~~~~~~VsVID~~t~kvv~ 351 (368)
T 1mda_H 322 AQDGASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp CCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred CCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence 67776 667776 59999999999876543
No 243
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.70 E-value=4.1e-09 Score=93.39 Aligned_cols=50 Identities=24% Similarity=0.369 Sum_probs=45.9
Q ss_pred cccCCCHHHHHHHccCCChhhhHHHhhhhhhHHHhhcCcchhhhhhhhhc
Q 009993 63 TITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERW 112 (520)
Q Consensus 63 ~~~~LP~el~~~i~~~L~~~~l~~~s~v~~~~~~~~~~~~lW~~~~~~~~ 112 (520)
++..||.|++++||+||+|++|+++++|||+|+.+++|+.||+.++.+.+
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~ 53 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDL 53 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSG
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccC
Confidence 47789999999999999999999999999999999999999998766543
No 244
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.66 E-value=2.3e-06 Score=89.52 Aligned_cols=185 Identities=15% Similarity=0.153 Sum_probs=110.8
Q ss_pred EEecCCCEEEEE-----eCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCC-----
Q 009993 189 AVAADKKLLVAG-----GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDM----- 257 (520)
Q Consensus 189 ~~~~~~~~l~sg-----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg----- 257 (520)
+++|||++|+-+ +....|++||+.++... ...+.+.. ...++| |++.|+.++.+.
T Consensus 135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~------------~~~~~~~k--~~~~~WsDg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 135 SFSRDGRILAYSLSLAGSDWREIHLMDVESKQPL------------ETPLKDVK--FSGISWLGNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEEEETTTCSEE------------EEEEEEEE--SCCCEEETTTEEEEEESSCCC---
T ss_pred EECCCCCEEEEEEecCCCceEEEEEEECCCCCCC------------ccccCCce--eccEEEeCCCEEEEEEecCccccc
Confidence 567999988843 33357999999887421 11121111 123344 888888888774
Q ss_pred --------eEEEEECCCCcE--EEEeee----ccCEEEE--eeCCCEEEEEc--C---CeEEEEECCCCe-eeEEeeccc
Q 009993 258 --------TVRVWDRALLKC--LKVLRH----SDWVYGL--APHDTTVASTS--G---SDVYIWDTNSGC-LLTVVNGAH 315 (520)
Q Consensus 258 --------~v~iwd~~~~~~--~~~~~~----~~~v~~~--~~~~~~l~~~~--d---~~i~iwd~~~~~-~~~~~~~~~ 315 (520)
.|++|++.+... ...+.. .....++ ++++++++... + +.|+++|+.++. ....+. .+
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~-~~ 279 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ-GD 279 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE-CS
T ss_pred ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe-CC
Confidence 399999987643 223332 2234444 48999876544 2 479999998763 334443 34
Q ss_pred ccceEEEEecCCCCEEE-EEeCC---CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeC-CC--cEEE
Q 009993 316 VGNTKSLARSHTGDFLF-TGGED---GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAG-DG--KLSL 388 (520)
Q Consensus 316 ~~~i~~l~~s~~~~~l~-tg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~-dg--~i~v 388 (520)
....... ++++|+.|+ ....+ +.|..+|+.++.. .....+..|...+..+..++++|+.... ++ .|++
T Consensus 280 ~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~----~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~ 354 (693)
T 3iuj_A 280 LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP----AHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQ 354 (693)
T ss_dssp SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG----GGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEE
T ss_pred CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc----cccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEE
Confidence 4444444 566666555 44333 6799999887632 1123444555444455556677766654 44 6888
Q ss_pred EeCCc
Q 009993 389 IDVRK 393 (520)
Q Consensus 389 wd~~~ 393 (520)
||+..
T Consensus 355 ~d~~g 359 (693)
T 3iuj_A 355 FDYEG 359 (693)
T ss_dssp ECTTS
T ss_pred EECCC
Confidence 98864
No 245
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.64 E-value=8.6e-06 Score=72.14 Aligned_cols=175 Identities=11% Similarity=0.015 Sum_probs=115.6
Q ss_pred CCCEEEEEeCCC--cEEEEEcccCcceeeeccCCccccceEEeccC-CCCeEEEEEcCCEEEEEe-cCCeEEEEECCCCc
Q 009993 193 DKKLLVAGGTDG--FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH-EGPITSLALDLTRIYSGS-WDMTVRVWDRALLK 268 (520)
Q Consensus 193 ~~~~l~sg~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~l~s~s-~dg~v~iwd~~~~~ 268 (520)
++.++.+.+.+| .|+++|+.+++. .....-. .---..++++++.|+... .++.+.++|..+.+
T Consensus 52 ~~~LyestG~~g~S~v~~vD~~Tgkv-------------~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 52 NGYFYESTGLNGRSSIRKVDIESGKT-------------LQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp TTEEEEEEEETTEEEEEEECTTTCCE-------------EEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCC
T ss_pred CCEEEEECCCCCCceEEEEECCCCcE-------------EEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCc
Confidence 555566666666 899999988742 1111111 112234667777766665 47899999999999
Q ss_pred EEEEeeeccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeeccc---c-cceEEEEecCCCCEEEEEeCCCeEEEE
Q 009993 269 CLKVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAH---V-GNTKSLARSHTGDFLFTGGEDGAIHMY 343 (520)
Q Consensus 269 ~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~---~-~~i~~l~~s~~~~~l~tg~~dg~i~iw 343 (520)
.+.++.....-..+++++..++.+. ++.|.++|..+.+.+..+.-+. . ..++.+.+. +|...+....++.|.+.
T Consensus 119 ~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vI 197 (262)
T 3nol_A 119 QVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRI 197 (262)
T ss_dssp EEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEE
Confidence 9999985554456778888777777 7889999999998888776321 1 345567776 67666666578899999
Q ss_pred EcccCccccceeeeeeec-------CCcCCEEEEEecC--CEEEEEeC
Q 009993 344 EIINDCTEANVLLVATWI-------PHTGPVNSLAFEF--PWLVSAAG 382 (520)
Q Consensus 344 d~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~~--~~l~s~s~ 382 (520)
|..++.....+..- .+. .-....+.|+|+| +.|+..+.
T Consensus 198 Dp~tG~V~~~Id~~-~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 198 DPETGKVTGIIDLN-GILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp CTTTCBEEEEEECT-TGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ECCCCcEEEEEECC-cCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 99998432221110 010 1124679999987 45544443
No 246
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.59 E-value=0.00019 Score=76.28 Aligned_cols=240 Identities=8% Similarity=0.032 Sum_probs=146.3
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCC-------CCceEEEEecC-CCEEEEEeCCCcEEEEEccc
Q 009993 142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP-------LGCTIRAVAAD-KKLLVAGGTDGFIHCWRAVE 213 (520)
Q Consensus 142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~-------~~~~v~~~~~~-~~~l~sg~~dg~i~vwd~~~ 213 (520)
...|.++...+++.+.+ |+.++-+..||..+++....... ....|.++..+ ...|..|+.+ -|.+||..+
T Consensus 214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~ 291 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGT 291 (795)
T ss_dssp CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTT
T ss_pred CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCC
Confidence 46788888887776544 55444488999877654432221 13567777633 3456666666 588888766
Q ss_pred CcceeeeccCCccccceEEeccCCCCeEEEEEc-CCEEEEEecCCeEEEEECCCCcEEEEee-------eccCEEEEee-
Q 009993 214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALD-LTRIYSGSWDMTVRVWDRALLKCLKVLR-------HSDWVYGLAP- 284 (520)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~-------~~~~v~~~~~- 284 (520)
+....+....... ..-....|.++..| ...|..|+.++-|..|+..+........ ....|.++..
T Consensus 292 ~~~~~~~~~~~~~------~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d 365 (795)
T 4a2l_A 292 DSFASYSSNPVEN------GSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVED 365 (795)
T ss_dssp TEEEEECCCTTST------TSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEEC
T ss_pred CeEEEEecCCCCC------CCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEEC
Confidence 5322111100000 00134678999884 3567788887889999876554322111 2456888873
Q ss_pred -CCCEEEEEcCCeEEEEECCCCeeeEEeec-------ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceee
Q 009993 285 -HDTTVASTSGSDVYIWDTNSGCLLTVVNG-------AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL 356 (520)
Q Consensus 285 -~~~~l~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~ 356 (520)
++.+.+...++.|..||..++........ -....|.+++..+++..|..|+.++-|.+||..++.. ..
T Consensus 366 ~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~----~~ 441 (795)
T 4a2l_A 366 KDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV----EN 441 (795)
T ss_dssp TTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE----EE
T ss_pred CCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE----EE
Confidence 45554444477899999987754433211 1235789999988888567788877799999877621 11
Q ss_pred eeee--cCCcCCEEEEEecC-CEEEEEeCCCcEEEEeCCcc
Q 009993 357 VATW--IPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 357 ~~~~--~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~ 394 (520)
.... ......|.++..++ ..|..|+.+ -|.+||..+.
T Consensus 442 ~~~~~~~l~~~~v~~i~~d~~g~lwigt~~-Gl~~~~~~~~ 481 (795)
T 4a2l_A 442 FNQRNSQLVNENVYAILPDGEGNLWLGTLS-ALVRFNPEQR 481 (795)
T ss_dssp ECTTTSCCSCSCEEEEEECSSSCEEEEESS-CEEEEETTTT
T ss_pred eecCCCCcCCCeeEEEEECCCCCEEEEecC-ceeEEeCCCC
Confidence 1000 02345789998875 456666664 5888998753
No 247
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.58 E-value=1.3e-05 Score=83.06 Aligned_cols=237 Identities=13% Similarity=0.101 Sum_probs=143.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeCCCC----ceEEE-EecCCCEEEEEeC------CCcEEEEEcccCcceeeecc
Q 009993 154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLG----CTIRA-VAADKKLLVAGGT------DGFIHCWRAVEVLPHLFDIS 222 (520)
Q Consensus 154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~----~~v~~-~~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~ 222 (520)
+..++.++.|+.|..+|..+|+.+..+.... ..+.+ -...+..++++.. +|.|..+|..+|+.. +...
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~-W~~~ 195 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLA-WRFY 195 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE-EEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEE-EEec
Confidence 5678888999999999999999987765421 01100 0012345555543 589999999988642 2111
Q ss_pred C--Cccccc-----------------eEEeccCCCCeEEEEE--cCCEEEEEecCC-------------------eEEEE
Q 009993 223 G--SEKQNT-----------------QFRLWEHEGPITSLAL--DLTRIYSGSWDM-------------------TVRVW 262 (520)
Q Consensus 223 ~--~~~~~~-----------------~~~~~~h~~~v~~l~~--~~~~l~s~s~dg-------------------~v~iw 262 (520)
. ...... .....++......+++ +.+.++.++.++ .|..+
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 0 000000 0000011111223556 457888887766 49999
Q ss_pred ECCCCcEEEEeee---c-------cCEE--EEeeCCC---EEEEEc-CCeEEEEECCCCeeeEEeecccc----------
Q 009993 263 DRALLKCLKVLRH---S-------DWVY--GLAPHDT---TVASTS-GSDVYIWDTNSGCLLTVVNGAHV---------- 316 (520)
Q Consensus 263 d~~~~~~~~~~~~---~-------~~v~--~~~~~~~---~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~---------- 316 (520)
|.++++.+..+.. . .+.. .+..+++ .++.++ +|.++++|..+|+.+........
T Consensus 276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~ 355 (668)
T 1kv9_A 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT 355 (668)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence 9999999888762 1 2222 2335665 567777 89999999999998854432110
Q ss_pred -cce------------------------EEEEecCCCCEEEEEe------------------------------------
Q 009993 317 -GNT------------------------KSLARSHTGDFLFTGG------------------------------------ 335 (520)
Q Consensus 317 -~~i------------------------~~l~~s~~~~~l~tg~------------------------------------ 335 (520)
.++ ..++++|+..++++..
T Consensus 356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~ 435 (668)
T 1kv9_A 356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV 435 (668)
T ss_dssp CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred CCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence 000 1257777777665421
Q ss_pred CCCeEEEEEcccCccccceeeeeeecCCcCC-EEEEEecCCEEEEEeCCCcEEEEeCCccccc
Q 009993 336 EDGAIHMYEIINDCTEANVLLVATWIPHTGP-VNSLAFEFPWLVSAAGDGKLSLIDVRKLLRS 397 (520)
Q Consensus 336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~ 397 (520)
.+|.|..||+.++ +.+.....+... -..+...+.+++.++.||.|++||.+++...
T Consensus 436 ~~g~l~A~D~~tG------~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 436 VSGALLAWDPVKQ------KAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp CEEEEEEEETTTT------EEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccceEEEEeCCCC------cEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence 2478999999998 444333322211 1234556789999999999999999986433
No 248
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.57 E-value=7.8e-06 Score=77.49 Aligned_cols=204 Identities=8% Similarity=0.003 Sum_probs=122.0
Q ss_pred ccccccEEEEEEccCCCEEEEEeC-----CCeEEEEECCCCcEEEEeCCC------Cc--eEEEEecCCCEE-EEEe---
Q 009993 139 YGHTEAVLTVFVLASAKLLFTSGY-----DSIVRMWHLEDGFSIASSKPL------GC--TIRAVAADKKLL-VAGG--- 201 (520)
Q Consensus 139 ~~h~~~V~~l~~~~~~~~l~sgs~-----dg~v~vwd~~~~~~~~~~~~~------~~--~v~~~~~~~~~l-~sg~--- 201 (520)
.+|-..+.+++++++++++++-.. ++.|.+||+.+++.+..+... .. .-..+.+++..+ ++..
T Consensus 63 ~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~ 142 (343)
T 2qe8_A 63 IITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD 142 (343)
T ss_dssp CCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG
T ss_pred ccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC
Confidence 356778999999999887666543 578999999999877665321 11 233556554444 5544
Q ss_pred CCCcEEEEEcccCcceeeeccC--C-ccccceEEecc--------------CCCCeEEEEE--cCCEEEEEecCC-eEEE
Q 009993 202 TDGFIHCWRAVEVLPHLFDISG--S-EKQNTQFRLWE--------------HEGPITSLAL--DLTRIYSGSWDM-TVRV 261 (520)
Q Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~--~-~~~~~~~~~~~--------------h~~~v~~l~~--~~~~l~s~s~dg-~v~i 261 (520)
.++.|.+||..++...... .. . ..........+ ....+..|++ +++.|+.+..++ .+..
T Consensus 143 ~~~~i~v~d~~~g~~~r~~-~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~ 221 (343)
T 2qe8_A 143 DKAALIRVDLQTGLAARVL-QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYR 221 (343)
T ss_dssp GGCEEEEEETTTCCEEEEC-TTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEE
T ss_pred CCCeEEEEECCCCCEEEEe-cCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEE
Confidence 5789999999876432211 10 0 00000000100 1134678888 667888877666 4544
Q ss_pred EECC---CCc--------EEEEeeeccCE--EEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCC
Q 009993 262 WDRA---LLK--------CLKVLRHSDWV--YGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT 327 (520)
Q Consensus 262 wd~~---~~~--------~~~~~~~~~~v--~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~ 327 (520)
++.. .+. .+....+.... .++.++++++++.. ++.|.+||..+++........+...+.+++|.++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~ 301 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSD 301 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTT
T ss_pred EEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCC
Confidence 4431 110 01112222222 35557888888887 7999999996676443333223556899999999
Q ss_pred CCEEEEEeCCCeEEEE
Q 009993 328 GDFLFTGGEDGAIHMY 343 (520)
Q Consensus 328 ~~~l~tg~~dg~i~iw 343 (520)
+.++++.+..+.+.+|
T Consensus 302 g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 302 GYLYFDCNQLHHSAPL 317 (343)
T ss_dssp SCEEEEECCGGGSGGG
T ss_pred CcEEEEeCcccccccc
Confidence 9888887765544433
No 249
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.56 E-value=1.1e-05 Score=71.35 Aligned_cols=180 Identities=12% Similarity=0.044 Sum_probs=118.4
Q ss_pred EEEec-CCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEE-ecCCeEEEEECC
Q 009993 188 RAVAA-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSG-SWDMTVRVWDRA 265 (520)
Q Consensus 188 ~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~-s~dg~v~iwd~~ 265 (520)
..+.. ++.+.++.+.+|.|+++|+.+++.. ... +.. ...-..++++++.|+.. -.++.+.+||..
T Consensus 58 qGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~-----------~~~-l~~-~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~ 124 (268)
T 3nok_A 58 QGLVFHQGHFFESTGHQGTLRQLSLESAQPV-----------WME-RLG-NIFAEGLASDGERLYQLTWTEGLLFTWSGM 124 (268)
T ss_dssp EEEEEETTEEEEEETTTTEEEECCSSCSSCS-----------EEE-ECT-TCCEEEEEECSSCEEEEESSSCEEEEEETT
T ss_pred ceEEEECCEEEEEcCCCCEEEEEECCCCcEE-----------eEE-CCC-CcceeEEEEeCCEEEEEEccCCEEEEEECC
Confidence 44443 3455666777889999999887521 111 221 11223467766555544 457899999999
Q ss_pred CCcEEEEeeeccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeeccc-c---cceEEEEecCCCCEEEEEeCCCeE
Q 009993 266 LLKCLKVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAH-V---GNTKSLARSHTGDFLFTGGEDGAI 340 (520)
Q Consensus 266 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~-~---~~i~~l~~s~~~~~l~tg~~dg~i 340 (520)
+.+.+.++.....-..++++++.|+.+. ++.|.++|..+.+.+..+.-+. . ..++.+.|. +|...+....+..|
T Consensus 125 Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I 203 (268)
T 3nok_A 125 PPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDV 203 (268)
T ss_dssp TTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEE
T ss_pred cCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeE
Confidence 9999999985555567778888888877 8999999999998888776321 1 245667776 67656555568899
Q ss_pred EEEEcccCccccceeeeee-------ecCCcCCEEEEEecC---CEEEEEe
Q 009993 341 HMYEIINDCTEANVLLVAT-------WIPHTGPVNSLAFEF---PWLVSAA 381 (520)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~-------~~~h~~~v~~l~~~~---~~l~s~s 381 (520)
.+.|..++.....+..-.. ...-....+.|+++| .+++||-
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 9999999843222111000 011224679999986 3555553
No 250
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.56 E-value=2.6e-05 Score=79.20 Aligned_cols=232 Identities=14% Similarity=0.110 Sum_probs=136.6
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEeCCCCc----eEEE--EecCCCEEEEEe------CCCcEEEEEcccCcceeeeccCC
Q 009993 157 LFTSGYDSIVRMWHLEDGFSIASSKPLGC----TIRA--VAADKKLLVAGG------TDGFIHCWRAVEVLPHLFDISGS 224 (520)
Q Consensus 157 l~sgs~dg~v~vwd~~~~~~~~~~~~~~~----~v~~--~~~~~~~l~sg~------~dg~i~vwd~~~~~~~~~~~~~~ 224 (520)
|+.++.|+.|..+|..+|+.+........ .+.+ +..+ ..+++++ .+|.|..+|..+++.. +.....
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~-W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVK-DKVIIGSSGAELGVRGYLTAYDVKTGEQV-WRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET-TEEEECCBCGGGTCCCEEEEEETTTCCEE-EEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEEC-CEEEEEecccccCCCCeEEEEECCCCcEE-EEEcCC
Confidence 88888999999999999998876542210 1110 0123 4555555 3799999999988642 211111
Q ss_pred ccccce--------------------EE----eccC-CCCeE-EEEE--cCCEEEEEecC----------------CeEE
Q 009993 225 EKQNTQ--------------------FR----LWEH-EGPIT-SLAL--DLTRIYSGSWD----------------MTVR 260 (520)
Q Consensus 225 ~~~~~~--------------------~~----~~~h-~~~v~-~l~~--~~~~l~s~s~d----------------g~v~ 260 (520)
...... .. ...+ ...+. .+++ ..+.++.++.+ +.|.
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~ 281 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence 000000 00 0000 01111 2233 45677777655 3899
Q ss_pred EEECCCCcEEEEeeec-----------cCEE-EEe-eCC---CEEEEEc-CCeEEEEECCCCeeeEEeeccc--------
Q 009993 261 VWDRALLKCLKVLRHS-----------DWVY-GLA-PHD---TTVASTS-GSDVYIWDTNSGCLLTVVNGAH-------- 315 (520)
Q Consensus 261 iwd~~~~~~~~~~~~~-----------~~v~-~~~-~~~---~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~-------- 315 (520)
.+|.++++.+..++.. .++. .+. .++ ..++.++ +|.++++|.++|+.+.......
T Consensus 282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~ 361 (599)
T 1w6s_A 282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSV 361 (599)
T ss_dssp EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred EEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccc
Confidence 9999999998887621 1122 222 356 4566676 8999999999999887664221
Q ss_pred ---c-cce--------------------------EEEEecCCCCEEEEEe------------------------------
Q 009993 316 ---V-GNT--------------------------KSLARSHTGDFLFTGG------------------------------ 335 (520)
Q Consensus 316 ---~-~~i--------------------------~~l~~s~~~~~l~tg~------------------------------ 335 (520)
. .++ ..++++|+..++++..
T Consensus 362 ~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 441 (599)
T 1w6s_A 362 DLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPG 441 (599)
T ss_dssp CTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred ccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccC
Confidence 0 011 2356777766655432
Q ss_pred ---------CCCeEEEEEcccCccccceeeeeeecCCcCCE--EEEEecCCEEEEEeCCCcEEEEeCCccccc
Q 009993 336 ---------EDGAIHMYEIINDCTEANVLLVATWIPHTGPV--NSLAFEFPWLVSAAGDGKLSLIDVRKLLRS 397 (520)
Q Consensus 336 ---------~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v--~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~ 397 (520)
.+|.|..||+.+++ .+..... ..++ ..+...+..++.++.||.++.||.+++...
T Consensus 442 p~~~~~~~~~~G~l~A~D~~tG~------~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~l 507 (599)
T 1w6s_A 442 PKGDRQNYEGLGQIKAYNAITGD------YKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL 507 (599)
T ss_dssp TTSBTTTTBCCEEEEEECTTTCC------EEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CcCCcccCCCcCeEEEEECCCCC------EEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEE
Confidence 34678888888773 3332211 1111 124446688888999999999999986443
No 251
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.54 E-value=2.1e-05 Score=81.63 Aligned_cols=264 Identities=11% Similarity=0.056 Sum_probs=142.3
Q ss_pred EEEEcc-CCCEEEEEeCCC-----------eEEEEECCCCcE--EEEeC-CCC--ceEEEEecCCCEEEEEeC-CCcEEE
Q 009993 147 TVFVLA-SAKLLFTSGYDS-----------IVRMWHLEDGFS--IASSK-PLG--CTIRAVAADKKLLVAGGT-DGFIHC 208 (520)
Q Consensus 147 ~l~~~~-~~~~l~sgs~dg-----------~v~vwd~~~~~~--~~~~~-~~~--~~v~~~~~~~~~l~sg~~-dg~i~v 208 (520)
.+++.+ ++++++.|+.+. .+.+||..+++- +..+. .+. +...++..++.+++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 455667 888888887643 588999987753 22221 121 222345588999999985 467999
Q ss_pred EEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEe-cC-----CeEEEEECCCCcEEEEe-----e--
Q 009993 209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGS-WD-----MTVRVWDRALLKCLKVL-----R-- 274 (520)
Q Consensus 209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s-~d-----g~v~iwd~~~~~~~~~~-----~-- 274 (520)
||..+..-. ....+......-....+ ++..++.|+ .+ ..+.+||..+.+-...- .
T Consensus 270 yd~~t~~W~-----------~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~ 338 (656)
T 1k3i_A 270 YDSSSDSWI-----------PGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPML 338 (656)
T ss_dssp EEGGGTEEE-----------ECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGC
T ss_pred ecCcCCcee-----------ECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccc
Confidence 998765321 11111122223334455 788888888 34 57999999876543320 0
Q ss_pred eccCEEEEeeCCCEEEEE----------cCCeEEEEECCCCeeeEEeecccc---------cceEEEEecC-CCCEEEEE
Q 009993 275 HSDWVYGLAPHDTTVAST----------SGSDVYIWDTNSGCLLTVVNGAHV---------GNTKSLARSH-TGDFLFTG 334 (520)
Q Consensus 275 ~~~~v~~~~~~~~~l~~~----------~d~~i~iwd~~~~~~~~~~~~~~~---------~~i~~l~~s~-~~~~l~tg 334 (520)
....-..+..++..++.+ ....+..||..+..-...... +. ..-.++.|.. ++++++.|
T Consensus 339 ~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~-~~~~~~~~~~~~~~~av~~~~~~~~i~v~G 417 (656)
T 1k3i_A 339 TADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGK-RQSNRGVAPDAMCGNAVMYDAVKGKILTFG 417 (656)
T ss_dssp CCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEE-CEETTEECCCCBTCEEEEEETTTTEEEEEC
T ss_pred cccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCc-cccccccCCCCCCCceEeccCCCCeEEEEe
Confidence 000000001233333333 235678899987754433221 11 1234455543 67788888
Q ss_pred eCCC-----------eEEEEEcccCccccceeeee--eecCCcCCEEEEEe-cCCEEEEEeCC-----------CcEEEE
Q 009993 335 GEDG-----------AIHMYEIINDCTEANVLLVA--TWIPHTGPVNSLAF-EFPWLVSAAGD-----------GKLSLI 389 (520)
Q Consensus 335 ~~dg-----------~i~iwd~~~~~~~~~~~~~~--~~~~h~~~v~~l~~-~~~~l~s~s~d-----------g~i~vw 389 (520)
+.++ .|.+||..+..- ..+. .+........++.. ++..++.|+.+ ..+.+|
T Consensus 418 G~~~~~~~~~~~~~~~v~~yd~~~~~W----~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~y 493 (656)
T 1k3i_A 418 GSPDYQDSDATTNAHIITLGEPGTSPN----TVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIY 493 (656)
T ss_dssp CBSSSSSSBCCCCEEEEECCSTTSCCE----EEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEE
T ss_pred CCCCCCCCCcCCcceEEEcCCCCCCCe----eEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEE
Confidence 7543 577777766521 1111 11111122234445 67888888754 468899
Q ss_pred eCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecC
Q 009993 390 DVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGE 441 (520)
Q Consensus 390 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~ 441 (520)
|..+..- ..+.........|. +..+.++++.++.||.
T Consensus 494 dp~t~~W-------------~~~~~~~~~R~~hs--~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 494 VPEQDTF-------------YKQNPNSIVRVYHS--ISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EGGGTEE-------------EECCCCSSCCCTTE--EEEECTTSCEEEEECC
T ss_pred cCCCCce-------------eecCCCCCcccccc--HhhcCCCcEEEecCCC
Confidence 9876321 11111111122343 2234467888888885
No 252
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.53 E-value=3.5e-05 Score=78.17 Aligned_cols=235 Identities=14% Similarity=0.083 Sum_probs=139.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeCCCC--c--eEEE-EecCCCEEEEEeC------CCcEEEEEcccCcceeeecc
Q 009993 154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLG--C--TIRA-VAADKKLLVAGGT------DGFIHCWRAVEVLPHLFDIS 222 (520)
Q Consensus 154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~--~--~v~~-~~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~ 222 (520)
+..++.++.|+.|..+|..+|+.+....... . .+.+ -...+..+++++. +|.|..+|..+++.. +...
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~-W~~~ 193 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELK-WRAF 193 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEE-EEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEE-EEEc
Confidence 5678888899999999999999887654221 0 1110 0012445666655 789999999988642 2111
Q ss_pred CCccccce--------------------EE----eccCC-CCe-EEEEEc--CCEEEEEecC----------------Ce
Q 009993 223 GSEKQNTQ--------------------FR----LWEHE-GPI-TSLALD--LTRIYSGSWD----------------MT 258 (520)
Q Consensus 223 ~~~~~~~~--------------------~~----~~~h~-~~v-~~l~~~--~~~l~s~s~d----------------g~ 258 (520)
........ .. ...+. +.+ ..++++ .+.++.++.+ +.
T Consensus 194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~ 273 (571)
T 2ad6_A 194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT 273 (571)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence 11000000 00 00000 001 123443 3566666532 36
Q ss_pred EEEEECCCCcEEEEeeec-----------cCEE-EEeeCCC---EEEEEc-CCeEEEEECCCCeeeEEeecccc------
Q 009993 259 VRVWDRALLKCLKVLRHS-----------DWVY-GLAPHDT---TVASTS-GSDVYIWDTNSGCLLTVVNGAHV------ 316 (520)
Q Consensus 259 v~iwd~~~~~~~~~~~~~-----------~~v~-~~~~~~~---~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~------ 316 (520)
|..+|.++++.+..++.. .++. ....+++ .++.++ +|.++++|..+|+.+..+.....
T Consensus 274 v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~ 353 (571)
T 2ad6_A 274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKK 353 (571)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccccc
Confidence 999999999998877621 1222 1224664 566666 89999999999998877653220
Q ss_pred ------cce--------------------------EEEEecCCCCEEEEEe-----------------------------
Q 009993 317 ------GNT--------------------------KSLARSHTGDFLFTGG----------------------------- 335 (520)
Q Consensus 317 ------~~i--------------------------~~l~~s~~~~~l~tg~----------------------------- 335 (520)
.++ ..++++|+..++++..
T Consensus 354 ~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 433 (571)
T 2ad6_A 354 VDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYP 433 (571)
T ss_dssp ECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred ccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceecc
Confidence 111 2357788877777654
Q ss_pred --------CCCeEEEEEcccCccccceeeeeeecCCcCCEE--EEEecCCEEEEEeCCCcEEEEeCCcccc
Q 009993 336 --------EDGAIHMYEIINDCTEANVLLVATWIPHTGPVN--SLAFEFPWLVSAAGDGKLSLIDVRKLLR 396 (520)
Q Consensus 336 --------~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~--~l~~~~~~l~s~s~dg~i~vwd~~~~~~ 396 (520)
.+|.|..||+.+++ .+.++... ..+. .+...+..++.++.||.|+.||.+++..
T Consensus 434 ~~~~~~~~~~g~l~a~D~~tG~------~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 434 GPNGPTKKEMGQIRAFDLTTGK------AKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp CTTSTTSCCCEEEEEECTTTCC------EEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred CccccCCCCCCeEEEEECCCCC------EEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence 34788889988883 33333211 1111 1233567888899999999999998643
No 253
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.50 E-value=3.1e-05 Score=76.78 Aligned_cols=222 Identities=12% Similarity=0.026 Sum_probs=143.0
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEeCC---------------------------------CC--------ceEEEEe----
Q 009993 157 LFTSGYDSIVRMWHLEDGFSIASSKP---------------------------------LG--------CTIRAVA---- 191 (520)
Q Consensus 157 l~sgs~dg~v~vwd~~~~~~~~~~~~---------------------------------~~--------~~v~~~~---- 191 (520)
+.||+..|.++|+-+.+++.++.+.. +. ..-..++
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 66888899999999888876655310 00 0012333
Q ss_pred -cCCCEEEEEeC-CCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE----cCCEEEEEe-----------
Q 009993 192 -ADKKLLVAGGT-DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGS----------- 254 (520)
Q Consensus 192 -~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s----------- 254 (520)
+||++++.... ++.|.+.|+.+.+. ..+..+. .......+++ +++++++++
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~-----------~~ii~ip-~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~ 165 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKC-----------DAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT 165 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEE-----------EEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSS
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceE-----------eeEEeCC-CCCCCcceeeeecCCCcEEEEecccccccCCCCc
Confidence 57888877665 45699999877531 1111222 2234666665 578888774
Q ss_pred -------cCCeEEEEECCCCcEEEEeee--ccCEEEEeeCCCEEEEEc-CC-----------------------------
Q 009993 255 -------WDMTVRVWDRALLKCLKVLRH--SDWVYGLAPHDTTVASTS-GS----------------------------- 295 (520)
Q Consensus 255 -------~dg~v~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~l~~~~-d~----------------------------- 295 (520)
.++.+.+.|..+.+...++.- ...-..++++++++++++ +.
T Consensus 166 ~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v 245 (595)
T 1fwx_A 166 NMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI 245 (595)
T ss_dssp STTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred ccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEec
Confidence 356899999999998888773 222344558888888877 32
Q ss_pred ---------eEEEEECCC--Cee-eEEeecccccceEEEEecCCCCEEEEEe-CCCeEEEEEcccCcc------ccceee
Q 009993 296 ---------DVYIWDTNS--GCL-LTVVNGAHVGNTKSLARSHTGDFLFTGG-EDGAIHMYEIINDCT------EANVLL 356 (520)
Q Consensus 296 ---------~i~iwd~~~--~~~-~~~~~~~~~~~i~~l~~s~~~~~l~tg~-~dg~i~iwd~~~~~~------~~~~~~ 356 (520)
.|.+.|.++ +.. +..+. -.....++.++|||+++++++ .+.+|.++|+.+... ......
T Consensus 246 ~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip--vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v 323 (595)
T 1fwx_A 246 AAGDYQELNGVKVVDGRKEASSLFTRYIP--IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV 323 (595)
T ss_dssp HHTCSEEETTEEEEECSGGGCCSSEEEEE--EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred cCCCeeEECcEEEEeCcccCCceeEEEEe--cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccce
Confidence 377777777 444 44443 234566899999999877655 578999999986521 000012
Q ss_pred eeeecCCcCCEEEEEecCC--EEEEEeCCCcEEEEeCCc
Q 009993 357 VATWIPHTGPVNSLAFEFP--WLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 357 ~~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~~ 393 (520)
+.... -......++|+++ ..++...|+.|.+||+.+
T Consensus 324 ~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 324 VAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred EEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 22222 2345788999763 344566799999999987
No 254
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.47 E-value=4.2e-05 Score=67.14 Aligned_cols=181 Identities=12% Similarity=0.013 Sum_probs=114.8
Q ss_pred EEEEecCCC-EEEEEeCC--CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEe-cCCeEEEE
Q 009993 187 IRAVAADKK-LLVAGGTD--GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS-WDMTVRVW 262 (520)
Q Consensus 187 v~~~~~~~~-~l~sg~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s-~dg~v~iw 262 (520)
...+..++. +..+.+.+ ..|+.+|+.+++.. ....+..+ -.-..+++.++.|+... .++.+.+|
T Consensus 23 tqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~-----------~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~ 90 (243)
T 3mbr_X 23 TEGLFYLRGHLYESTGETGRSSVRKVDLETGRIL-----------QRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVY 90 (243)
T ss_dssp EEEEEEETTEEEEEECCTTSCEEEEEETTTCCEE-----------EEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred cccEEEECCEEEEECCCCCCceEEEEECCCCCEE-----------EEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEE
Confidence 334443334 44455554 48999999887421 11112111 11234566666655554 57899999
Q ss_pred ECCCCcEEEEeeeccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccc----cceEEEEecCCCCEEEEEeCC
Q 009993 263 DRALLKCLKVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHV----GNTKSLARSHTGDFLFTGGED 337 (520)
Q Consensus 263 d~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~----~~i~~l~~s~~~~~l~tg~~d 337 (520)
|..+.+.+.++.....-..+.+++..|+.+. ++.|.++|..+.+.+..+.-+.. ..++.+.+. +|...+....+
T Consensus 91 D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s 169 (243)
T 3mbr_X 91 DLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLT 169 (243)
T ss_dssp ETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTT
T ss_pred ECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCC
Confidence 9999999999985555567778887777766 88999999999988887763211 345666765 66666556568
Q ss_pred CeEEEEEcccCccccceeeeeeec--------CCcCCEEEEEecC--C-EEEEEe
Q 009993 338 GAIHMYEIINDCTEANVLLVATWI--------PHTGPVNSLAFEF--P-WLVSAA 381 (520)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~--------~h~~~v~~l~~~~--~-~l~s~s 381 (520)
..|.+.|..++.....+..- .+. ......+.|+++| + ++++|-
T Consensus 170 ~~I~vIDp~tG~V~~~idl~-~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 170 SRIARIDPASGKVVAWIDLQ-ALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TEEEEECTTTCBEEEEEECG-GGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEECCCCCEEEEEECC-cCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 89999999998432221110 010 1224679999986 3 445543
No 255
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.46 E-value=0.0013 Score=69.81 Aligned_cols=237 Identities=11% Similarity=0.067 Sum_probs=147.3
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCC-------CCceEEEEecC-CCEEEEEeCCCcEEEEEccc
Q 009993 142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP-------LGCTIRAVAAD-KKLLVAGGTDGFIHCWRAVE 213 (520)
Q Consensus 142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~-------~~~~v~~~~~~-~~~l~sg~~dg~i~vwd~~~ 213 (520)
...|.++...++|.+. .|+.+ -|.+||..++........ ....|.++..| ...|..|+.++-|..++..+
T Consensus 262 ~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~ 339 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIR 339 (795)
T ss_dssp CSBEEEEEECTTSCEE-EEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGG
T ss_pred CCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCc
Confidence 3579999998888754 45555 489999877754432211 23567777632 34577888888899998765
Q ss_pred CcceeeeccCCccccceEEeccCCCCeEEEEEcC-CEEEEEecCCeEEEEECCCCcEEEEee---------eccCEEEEe
Q 009993 214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL-TRIYSGSWDMTVRVWDRALLKCLKVLR---------HSDWVYGLA 283 (520)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~---------~~~~v~~~~ 283 (520)
+....+..... . -.-....|.++..+. ..|..|+.++-|..||..+++...... ....|.++.
T Consensus 340 ~~~~~~~~~~~-~------~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~ 412 (795)
T 4a2l_A 340 NRFKNIRNIPY-K------NSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVY 412 (795)
T ss_dssp GSSEEECCCTT-S------SSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEE
T ss_pred ccceEEcCCCC-C------CCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEE
Confidence 43222111000 0 001245689998843 567788888789999988776544321 135688877
Q ss_pred --eCCCEEEEEc-CCeEEEEECCCCeeeEEeec---ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeee
Q 009993 284 --PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG---AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV 357 (520)
Q Consensus 284 --~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~---~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~ 357 (520)
.+++.|.+|+ ++.|..+|..+++....... .....|.++...++|.+.+.. .+ -+.+||..++.. ...
T Consensus 413 ~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~----~~~ 486 (795)
T 4a2l_A 413 VDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSF----TTI 486 (795)
T ss_dssp EETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEE----EEC
T ss_pred EcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeE----EEc
Confidence 4566355555 78899999988764433210 124578999988888755544 44 488899876521 111
Q ss_pred eee----cCCcCCEEEEEecC-CEEEEEeCCCcEEEEeCCcc
Q 009993 358 ATW----IPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 358 ~~~----~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~ 394 (520)
... .-....|.++..++ ..|..|+. +-|..||..+.
T Consensus 487 ~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~ 527 (795)
T 4a2l_A 487 EKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGL 527 (795)
T ss_dssp CBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETT
T ss_pred cccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCC
Confidence 100 11235789998865 45666666 55888987653
No 256
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.41 E-value=0.00021 Score=68.40 Aligned_cols=191 Identities=10% Similarity=0.033 Sum_probs=116.6
Q ss_pred cCCCEEE-EEeCCCcEEEEEcccCcceeeeccCCccccceEEec------c-CCCCeEEEEE--cCCEEEEEecC-----
Q 009993 192 ADKKLLV-AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW------E-HEGPITSLAL--DLTRIYSGSWD----- 256 (520)
Q Consensus 192 ~~~~~l~-sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~------~-h~~~v~~l~~--~~~~l~s~s~d----- 256 (520)
.+.++|+ .|..++.|.++|+.+... .......+. . -...-..+.. ++ .++++..+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~---------~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~ 162 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPR---------EPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEG 162 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTT---------SCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCS
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCC---------CceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCC
Confidence 4566655 456678999999865411 011111110 0 0011223333 55 66666555
Q ss_pred -CeEEEEECCCCcEEEEeeec-cC---E--EEEeeCCCEEEEEc--------------------CCeEEEEECCCCeeeE
Q 009993 257 -MTVRVWDRALLKCLKVLRHS-DW---V--YGLAPHDTTVASTS--------------------GSDVYIWDTNSGCLLT 309 (520)
Q Consensus 257 -g~v~iwd~~~~~~~~~~~~~-~~---v--~~~~~~~~~l~~~~--------------------d~~i~iwd~~~~~~~~ 309 (520)
|.|.++|..+++.+..+... .. - ..+.++++.++++. +..|.+||+.+++.+.
T Consensus 163 ~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~ 242 (462)
T 2ece_A 163 PGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH 242 (462)
T ss_dssp CCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE
T ss_pred CCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee
Confidence 78999999999999988622 21 2 23468888888884 6889999999998888
Q ss_pred Eeecc-cccceEEEEe--cCCCCEEEEEe------CCCeEEEEEcccCccccceeee--ee--ecC-----------CcC
Q 009993 310 VVNGA-HVGNTKSLAR--SHTGDFLFTGG------EDGAIHMYEIINDCTEANVLLV--AT--WIP-----------HTG 365 (520)
Q Consensus 310 ~~~~~-~~~~i~~l~~--s~~~~~l~tg~------~dg~i~iwd~~~~~~~~~~~~~--~~--~~~-----------h~~ 365 (520)
++..+ .......+.| +|+++++++++ .+++|.+|....+.. .....+ .. ..+ -..
T Consensus 243 tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~-~~~~vIdi~~~~v~~~lp~~~~~f~~~~~ 321 (462)
T 2ece_A 243 SLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW-NAEKVIEIPAEPLEGNLPEILKPFKAVPP 321 (462)
T ss_dssp EEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE-EEEEEEEECCEECCSSCCGGGGGGTEECC
T ss_pred EEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCce-eEEEEEeCCCccccccccccccccccCCC
Confidence 88753 2233445545 99999988877 466888877654311 000000 00 000 013
Q ss_pred CEEEEEecC--CEEEEEeC-CCcEEEEeCCc
Q 009993 366 PVNSLAFEF--PWLVSAAG-DGKLSLIDVRK 393 (520)
Q Consensus 366 ~v~~l~~~~--~~l~s~s~-dg~i~vwd~~~ 393 (520)
.+..|.+++ ++|.++.. .+.|.++|+..
T Consensus 322 ~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 322 LVTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp CCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred ceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 456777765 66766654 68999999964
No 257
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.40 E-value=0.00046 Score=64.00 Aligned_cols=221 Identities=8% Similarity=-0.049 Sum_probs=126.5
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC-CCCceEEEEecCCCEEEEEeCCC--cEEEEEcccCcceee
Q 009993 143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK-PLGCTIRAVAADKKLLVAGGTDG--FIHCWRAVEVLPHLF 219 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~l~sg~~dg--~i~vwd~~~~~~~~~ 219 (520)
.....++|+++++++++-..++.|..||.... ....+. +....-.++.++++++++..... .|..++..++....
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~- 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET- 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE-
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE-
Confidence 45678999999997777778899999997754 332222 22222234557888666554332 36666655553211
Q ss_pred eccCCccccceEEeccCCCCeEEEEE-cCCEEEEEe-cCCeEEEEECCCCcE-EEEe----------eeccCEEEEeeCC
Q 009993 220 DISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGS-WDMTVRVWDRALLKC-LKVL----------RHSDWVYGLAPHD 286 (520)
Q Consensus 220 ~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s-~dg~v~iwd~~~~~~-~~~~----------~~~~~v~~~~~~~ 286 (520)
.... ........++. .+..++... .++.|..+|..+++. +... ..-...+.+++++
T Consensus 110 ----------~~~~-~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg 178 (306)
T 2p4o_A 110 ----------LLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG 178 (306)
T ss_dssp ----------EEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET
T ss_pred ----------EEeC-CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCC
Confidence 1111 11122233333 444444444 588999999876431 1110 0112345567888
Q ss_pred CEEEEEc--CCeEEEEECCC-Cee--eEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec
Q 009993 287 TTVASTS--GSDVYIWDTNS-GCL--LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI 361 (520)
Q Consensus 287 ~~l~~~~--d~~i~iwd~~~-~~~--~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 361 (520)
+.++.+. .+.|..||+.. +.. ...+. .......++++++|+++++....+.|.++|.... . ..+..+.
T Consensus 179 ~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~--~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~-~----~~~~~~~ 251 (306)
T 2p4o_A 179 NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV--EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS-T----TIIAQAE 251 (306)
T ss_dssp TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE--ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC-E----EEEECGG
T ss_pred CEEEEEeCCCCEEEEEEeCCCCCCCccEEEe--ccCCCCCeEECCCCCEEEEeCCCCeEEEECCCCC-E----EEEeecc
Confidence 7766665 68899999875 321 12221 1134567889999988777777889999987522 1 1122222
Q ss_pred CCcCCEEEEEec---C--CEEEEEeCC
Q 009993 362 PHTGPVNSLAFE---F--PWLVSAAGD 383 (520)
Q Consensus 362 ~h~~~v~~l~~~---~--~~l~s~s~d 383 (520)
.....+++++|. + +.|+.++..
T Consensus 252 ~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 252 QGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp GTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred cccCCceEEEEecccCCCCEEEEECCC
Confidence 233568899986 3 455555543
No 258
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.40 E-value=0.00034 Score=74.16 Aligned_cols=285 Identities=10% Similarity=0.042 Sum_probs=161.4
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC--------------CCCceEEEEecC-CCEEEEEeCCCcE
Q 009993 142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK--------------PLGCTIRAVAAD-KKLLVAGGTDGFI 206 (520)
Q Consensus 142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~--------------~~~~~v~~~~~~-~~~l~sg~~dg~i 206 (520)
...|.++...++|. |..|+..+-|.++|..++....... -....|.++..| ...|..|+.++-|
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl 335 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGI 335 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCE
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeE
Confidence 35699998887776 5556664568889987664322111 123467777633 3457788878888
Q ss_pred EEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC-CEEEEEecCCeEEEEECCCCcEEEEe---e-eccCEEE
Q 009993 207 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL-TRIYSGSWDMTVRVWDRALLKCLKVL---R-HSDWVYG 281 (520)
Q Consensus 207 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~---~-~~~~v~~ 281 (520)
..++..+.....+...... ... ..-....|.++..+. ..|..|+.++-|..||..++...... . ....|.+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~--~~~--~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~ 411 (781)
T 3v9f_A 336 NFISNAPPTFHTWSYSPTQ--MNE--SSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLC 411 (781)
T ss_dssp EEECSSCCSCEEEC----C--CCS--SCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEE
T ss_pred EEeCCCCCcceeeccCccc--ccc--CCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEE
Confidence 8888765432222110000 000 001245688998854 66778887777999998765432211 1 3456888
Q ss_pred Eee--CCCEEEEEcCCeEEEEECCCCeeeEEee-cccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeee
Q 009993 282 LAP--HDTTVASTSGSDVYIWDTNSGCLLTVVN-GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA 358 (520)
Q Consensus 282 ~~~--~~~~l~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~ 358 (520)
+.. ++.+.+...++.+..+|..+++...... ......|.++...+++.+ ..|+. +-|..||..++.. ....
T Consensus 412 i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~~----~~~~ 485 (781)
T 3v9f_A 412 SLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKI-WIGTH-AGVFVIDLASKKV----IHHY 485 (781)
T ss_dssp EEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEE-EEEET-TEEEEEESSSSSC----CEEE
T ss_pred EEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCE-EEEEC-CceEEEeCCCCeE----Eecc
Confidence 874 4555554436889999998775433221 113457899988877764 44555 5588899876521 1111
Q ss_pred eec---CCcCCEEEEEecC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC
Q 009993 359 TWI---PHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD 434 (520)
Q Consensus 359 ~~~---~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 434 (520)
... .....|.++..++ ..|..|+.++-|..||..+.... ..... ..+ ....|.++..+.+
T Consensus 486 ~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-------------~~~~~-~~l--~~~~i~~i~~d~~ 549 (781)
T 3v9f_A 486 DTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVR-------------KFNQY-EGF--CSNTINQIYRSSK 549 (781)
T ss_dssp CTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEE-------------EECTT-TTC--SCSCEEEEEECTT
T ss_pred cCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEE-------------EccCC-CCC--CCCeeEEEEECCC
Confidence 111 1135789998865 56777776555888887653110 00100 001 1234666666543
Q ss_pred -EEEEecCCCeEEEEeCCch
Q 009993 435 -RIVCGGEEGIVRIWNFSQA 453 (520)
Q Consensus 435 -~l~sg~~Dg~v~iwd~~~~ 453 (520)
.|..|+.+|.|..||..++
T Consensus 550 g~lWi~T~~Glv~~~d~~~~ 569 (781)
T 3v9f_A 550 GQMWLATGEGLVCFPSARNF 569 (781)
T ss_dssp SCEEEEETTEEEEESCTTTC
T ss_pred CCEEEEECCCceEEECCCCC
Confidence 4444555676588887654
No 259
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.36 E-value=2.3e-07 Score=83.63 Aligned_cols=49 Identities=20% Similarity=0.246 Sum_probs=45.1
Q ss_pred cccCCCHHHHHHHccCCChhhhH-HHhhhhhhHHHhhcCcchhhhhhhhh
Q 009993 63 TITDLPPALISEILNCLDPKELG-IVSCVSPILHRLASDHHAWKEFYCER 111 (520)
Q Consensus 63 ~~~~LP~el~~~i~~~L~~~~l~-~~s~v~~~~~~~~~~~~lW~~~~~~~ 111 (520)
.+..||+|++.+||++|++++|+ +|++|||+|+.++++..+|+..+...
T Consensus 50 ~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~ 99 (297)
T 2e31_A 50 YLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE 99 (297)
T ss_dssp CTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred ChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence 57899999999999999999999 99999999999999999999865444
No 260
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.35 E-value=0.00032 Score=63.59 Aligned_cols=192 Identities=14% Similarity=0.067 Sum_probs=112.4
Q ss_pred CCeEEEEEc--CCEEEEE-ecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc--CCeEEEEECCCCeeeE
Q 009993 238 GPITSLALD--LTRIYSG-SWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS--GSDVYIWDTNSGCLLT 309 (520)
Q Consensus 238 ~~v~~l~~~--~~~l~s~-s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~--d~~i~iwd~~~~~~~~ 309 (520)
..+..++++ ++.|+.+ ..++.|..++.........+. .......+. +++..++.+. .+.|.++++.......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 356788884 4555554 456899999997665433332 113455555 5555555554 6889999987543322
Q ss_pred EeecccccceEEEEecCCCCEEEEEeC---CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEE-EeCC
Q 009993 310 VVNGAHVGNTKSLARSHTGDFLFTGGE---DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVS-AAGD 383 (520)
Q Consensus 310 ~~~~~~~~~i~~l~~s~~~~~l~tg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s-~s~d 383 (520)
... ........++++|++..|+.+.. .+.|..+++..... ..+ ..........+++++ ..|+. -...
T Consensus 116 ~~~-~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~----~~~--~~~~~~~P~gia~d~~~~~lyv~d~~~ 188 (267)
T 1npe_A 116 LFD-TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR----RIL--AQDNLGLPNGLTFDAFSSQLCWVDAGT 188 (267)
T ss_dssp EEC-SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC----EEE--ECTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred EEE-CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc----EEE--EECCCCCCcEEEEcCCCCEEEEEECCC
Confidence 222 22246789999997666655544 36888888765411 111 112234678899975 45544 4456
Q ss_pred CcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC-EEEEecCCCeEEEEeCCchHhH
Q 009993 384 GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEI 456 (520)
Q Consensus 384 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~~ 456 (520)
+.|.++|+...... .+. .+. .....+.+++. .+++....+.|..+|..+++.+
T Consensus 189 ~~I~~~~~~g~~~~----------~~~---------~~~-~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 189 HRAECLNPAQPGRR----------KVL---------EGL-QYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEM 242 (267)
T ss_dssp TEEEEEETTEEEEE----------EEE---------ECC-CSEEEEEEETTEEEEEETTTTEEEEEETTTTEEE
T ss_pred CEEEEEecCCCceE----------EEe---------cCC-CCceEEEEeCCEEEEEECCCCeEEEEeCCCCCce
Confidence 88999998753110 000 010 11123444555 4555556789999999877544
No 261
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.34 E-value=8.3e-05 Score=71.17 Aligned_cols=177 Identities=14% Similarity=0.049 Sum_probs=114.7
Q ss_pred EEEEEEccCCCEEEEEeCC------CeEEEEECCCCcEEEEeCCCCce---E--EEEecCCCEEEEEe------------
Q 009993 145 VLTVFVLASAKLLFTSGYD------SIVRMWHLEDGFSIASSKPLGCT---I--RAVAADKKLLVAGG------------ 201 (520)
Q Consensus 145 V~~l~~~~~~~~l~sgs~d------g~v~vwd~~~~~~~~~~~~~~~~---v--~~~~~~~~~l~sg~------------ 201 (520)
-..+...|+| +++++..+ |.|.+.|..+++.+.++.....+ - .-++|+++.+++..
T Consensus 140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~ 218 (462)
T 2ece_A 140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLK 218 (462)
T ss_dssp EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCC
T ss_pred ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccc
Confidence 3456778999 77776665 78999999999999988632221 1 34579999888874
Q ss_pred -------CCCcEEEEEcccCcceeeeccCCccccceEEecc--CCCCeEEEEE----cCCEEEEEe------cCCeEEEE
Q 009993 202 -------TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE--HEGPITSLAL----DLTRIYSGS------WDMTVRVW 262 (520)
Q Consensus 202 -------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~----~~~~l~s~s------~dg~v~iw 262 (520)
.+.+|.+||+.++. ...++.- .......+.| +++++++++ .+++|.+|
T Consensus 219 ~~~~~~~~~d~V~v~D~~~~k-------------~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~ 285 (462)
T 2ece_A 219 LEHLKDRYGNRIHFWDLRKRK-------------RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLW 285 (462)
T ss_dssp TTTHHHHSCCEEEEEETTTTE-------------EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEE
T ss_pred hhhhhhccCCEEEEEECCCCc-------------EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEE
Confidence 36899999997652 1112211 1123444545 566766665 45688776
Q ss_pred ECCCCcE--EEEee---e----------------ccCEE--EEeeCCCEEEEEc--CCeEEEEECCC---CeeeEEeecc
Q 009993 263 DRALLKC--LKVLR---H----------------SDWVY--GLAPHDTTVASTS--GSDVYIWDTNS---GCLLTVVNGA 314 (520)
Q Consensus 263 d~~~~~~--~~~~~---~----------------~~~v~--~~~~~~~~l~~~~--d~~i~iwd~~~---~~~~~~~~~~ 314 (520)
....++. .+.+. . ..... .+++++++|+++. .+.|.+||+.. .+.+..+..+
T Consensus 286 ~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tG 365 (462)
T 2ece_A 286 FYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLG 365 (462)
T ss_dssp EEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECB
T ss_pred EecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeC
Confidence 6554421 12211 0 11222 3559999999988 68999999853 3555555433
Q ss_pred cc-------------cceEEEEecCCCCEEEEEe
Q 009993 315 HV-------------GNTKSLARSHTGDFLFTGG 335 (520)
Q Consensus 315 ~~-------------~~i~~l~~s~~~~~l~tg~ 335 (520)
-. +....++++|||++|+++.
T Consensus 366 G~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 366 GIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 10 1357899999999999887
No 262
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.33 E-value=0.0018 Score=68.63 Aligned_cols=242 Identities=10% Similarity=0.012 Sum_probs=142.0
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCC-------CCceEEEEec-CCCEEEEEeCCCcEEEEEcccC
Q 009993 143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP-------LGCTIRAVAA-DKKLLVAGGTDGFIHCWRAVEV 214 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~-------~~~~v~~~~~-~~~~l~sg~~dg~i~vwd~~~~ 214 (520)
..|.++...++|.+.+ |+.+ -+.+||..+++....... ....|.++.. ....|..|+..+-|.++|..++
T Consensus 211 ~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~ 288 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQN 288 (781)
T ss_dssp SSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC
T ss_pred CceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCC
Confidence 5689998888887555 4445 589999877654322111 2345777763 3456777887566888887665
Q ss_pred cceeeeccCCccc-cceEEeccCCCCeEEEEEcC-CEEEEEecCCeEEEEECCCCcEEEEe-------e---eccCEEEE
Q 009993 215 LPHLFDISGSEKQ-NTQFRLWEHEGPITSLALDL-TRIYSGSWDMTVRVWDRALLKCLKVL-------R---HSDWVYGL 282 (520)
Q Consensus 215 ~~~~~~~~~~~~~-~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~-------~---~~~~v~~~ 282 (520)
....+....-... .......-....|.++..|. ..|..|+.++-|..++..+....... . ....|.++
T Consensus 289 ~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i 368 (781)
T 3v9f_A 289 QFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSV 368 (781)
T ss_dssp ---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEE
T ss_pred eeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEE
Confidence 3211110000000 00000011346788988843 56788887788999998765433221 1 23568888
Q ss_pred eeC--CCEEEEEcCCeEEEEECCCCeeeEEee--cccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeee
Q 009993 283 APH--DTTVASTSGSDVYIWDTNSGCLLTVVN--GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA 358 (520)
Q Consensus 283 ~~~--~~~l~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~ 358 (520)
..+ +.+.+...++.|..||..++....... ......|.++...+++.+. .|+.++-+..+|..++. ...
T Consensus 369 ~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~------~~~ 441 (781)
T 3v9f_A 369 CDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLW-FGTYLGNISYYNTRLKK------FQI 441 (781)
T ss_dssp EECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEE-EEETTEEEEEECSSSCE------EEE
T ss_pred EEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEE-EEeccCCEEEEcCCCCc------EEE
Confidence 743 444444437789999987654322110 1234578999888777654 46776778889877662 111
Q ss_pred ee--cCCcCCEEEEEecC-CEEEEEeCCCcEEEEeCCcc
Q 009993 359 TW--IPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 359 ~~--~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~ 394 (520)
.. ......|.++..++ ..|..|+. +-|..+|..+.
T Consensus 442 ~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~ 479 (781)
T 3v9f_A 442 IELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASK 479 (781)
T ss_dssp CCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSS
T ss_pred eccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCC
Confidence 11 12346789998875 56777777 55888987753
No 263
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.30 E-value=0.00037 Score=70.77 Aligned_cols=236 Identities=16% Similarity=0.156 Sum_probs=138.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeCCCC---------ceEEEEe-cCCC-EEEEEeC------CCcEEEEEcccCcc
Q 009993 154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLG---------CTIRAVA-ADKK-LLVAGGT------DGFIHCWRAVEVLP 216 (520)
Q Consensus 154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~---------~~v~~~~-~~~~-~l~sg~~------dg~i~vwd~~~~~~ 216 (520)
+..++.++.|+.|..+|..+|+.+....... .++..=. .+++ .+++++. +|.|..+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 5678888899999999999999887664321 2222111 1233 5666653 78999999988864
Q ss_pred eeeeccCCccc-----cceEEe----------------------ccCC-CCe-EEEEE--cCCEEEEEec----------
Q 009993 217 HLFDISGSEKQ-----NTQFRL----------------------WEHE-GPI-TSLAL--DLTRIYSGSW---------- 255 (520)
Q Consensus 217 ~~~~~~~~~~~-----~~~~~~----------------------~~h~-~~v-~~l~~--~~~~l~s~s~---------- 255 (520)
. +........ ...... ..+. +.+ ..+++ ..+.++.++.
T Consensus 197 ~-W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 197 I-WMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp E-EEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred E-eecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence 2 221111000 000000 0000 000 12344 3466766653
Q ss_pred ----------C----CeEEEEECCCCcEEEEeee---c--------cCEEE-Ee-eCCC---EEEEEc-CCeEEEEECCC
Q 009993 256 ----------D----MTVRVWDRALLKCLKVLRH---S--------DWVYG-LA-PHDT---TVASTS-GSDVYIWDTNS 304 (520)
Q Consensus 256 ----------d----g~v~iwd~~~~~~~~~~~~---~--------~~v~~-~~-~~~~---~l~~~~-d~~i~iwd~~~ 304 (520)
| +.|..+|..+++.+..++. . .++.. .. .+++ .++.++ +|.++++|.++
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence 2 6899999999999988762 1 12221 11 3563 677777 89999999999
Q ss_pred CeeeEEeecccc------------cce--------------------------------EEEEecCCCCEEEEEe-----
Q 009993 305 GCLLTVVNGAHV------------GNT--------------------------------KSLARSHTGDFLFTGG----- 335 (520)
Q Consensus 305 ~~~~~~~~~~~~------------~~i--------------------------------~~l~~s~~~~~l~tg~----- 335 (520)
|+.+..+..... .++ ..++++|+..++++..
T Consensus 356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~ 435 (582)
T 1flg_A 356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE 435 (582)
T ss_dssp CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence 998877653210 000 1345666655555432
Q ss_pred ----------------------------CCCeEEEEEcccCccccceeeeeeecCCcCCE--EEEEecCCEEEEEeCCCc
Q 009993 336 ----------------------------EDGAIHMYEIINDCTEANVLLVATWIPHTGPV--NSLAFEFPWLVSAAGDGK 385 (520)
Q Consensus 336 ----------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v--~~l~~~~~~l~s~s~dg~ 385 (520)
.+|.|..||+.+++ .+.+..... ++ ..+...+..++.|+.||.
T Consensus 436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~------~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~ 508 (582)
T 1flg_A 436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGK------VVWEHKEHL-PLWAGVLATAGNLVFTGTGDGY 508 (582)
T ss_dssp EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCC------EEEEEEESS-CCCSCCEEETTTEEEEECTTSE
T ss_pred eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCC------EEEEecCCC-CCcccceEeCCCEEEEECCCCc
Confidence 25788889998883 333322111 11 123345678889999999
Q ss_pred EEEEeCCccccc
Q 009993 386 LSLIDVRKLLRS 397 (520)
Q Consensus 386 i~vwd~~~~~~~ 397 (520)
++.||.+++...
T Consensus 509 l~A~D~~tG~~l 520 (582)
T 1flg_A 509 FKAFDAKSGKEL 520 (582)
T ss_dssp EEEEETTTCCEE
T ss_pred EEEEECCCCCEE
Confidence 999999986433
No 264
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.28 E-value=0.00073 Score=63.10 Aligned_cols=230 Identities=10% Similarity=-0.018 Sum_probs=130.6
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC--C------------------CCceEEE--EecCCCEEEEEe
Q 009993 144 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK--P------------------LGCTIRA--VAADKKLLVAGG 201 (520)
Q Consensus 144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~--~------------------~~~~v~~--~~~~~~~l~sg~ 201 (520)
...++++++++++++++..++.|..|+..++... .+. . ....... +.+++..|+.+.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 3457788999988888889999999998765432 221 0 0012333 445344566665
Q ss_pred CCCcEEEEEcccCcceeeeccCCccccceEEecc-CCCCeEEEEEcC--CEEEEEec------------------CCeEE
Q 009993 202 TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE-HEGPITSLALDL--TRIYSGSW------------------DMTVR 260 (520)
Q Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~--~~l~s~s~------------------dg~v~ 260 (520)
..+.|..+|..++....+.. ...+ .......+++++ ..++.+.. ++.|.
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~----------~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~ 168 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLAT----------SVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLI 168 (322)
T ss_dssp TTTEEEEECTTCEECEEEES----------EETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEE
T ss_pred CCCCEEEEeCCCCEEEEecc----------cCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEE
Confidence 55558888765442211100 0011 123466777743 33444332 36788
Q ss_pred EEECCCCcEEEEeeeccCE--EEEeeCCCEEEEEc--CCeEEEEECCCCe--eeEEeecccccceEEEEecCCCCEEEEE
Q 009993 261 VWDRALLKCLKVLRHSDWV--YGLAPHDTTVASTS--GSDVYIWDTNSGC--LLTVVNGAHVGNTKSLARSHTGDFLFTG 334 (520)
Q Consensus 261 iwd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~--d~~i~iwd~~~~~--~~~~~~~~~~~~i~~l~~s~~~~~l~tg 334 (520)
.+|..+++........... .++.++++.++++. .+.|.+|++.... ....+.. ..+ ...+++.++|++.++.
T Consensus 169 ~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~ 246 (322)
T 2fp8_A 169 KYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSS 246 (322)
T ss_dssp EEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEE
T ss_pred EEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEe
Confidence 8998777654333211122 34557888666554 6899999987521 1112211 223 7789999999877665
Q ss_pred eC----------CCeEEEEEcccCccccceeeeeeecCC----cCCEEEEEecCCEEEEE-eCCCcEEEEeCCc
Q 009993 335 GE----------DGAIHMYEIINDCTEANVLLVATWIPH----TGPVNSLAFEFPWLVSA-AGDGKLSLIDVRK 393 (520)
Q Consensus 335 ~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~h----~~~v~~l~~~~~~l~s~-s~dg~i~vwd~~~ 393 (520)
.. .+.|..+|.. + ..+..+... ...++++.+....|+.+ ..++.|.++++..
T Consensus 247 ~~~~~~~~~~~~~~~v~~~d~~-G------~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 247 SEELDGNMHGRVDPKGIKFDEF-G------NILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEETTSSTTSCEEEEEEEECTT-S------CEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC--
T ss_pred cCcccccccCCCccEEEEECCC-C------CEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEeccc
Confidence 44 4667788764 3 223333222 23466677765555554 4678899998864
No 265
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.28 E-value=8.5e-05 Score=73.71 Aligned_cols=217 Identities=12% Similarity=0.027 Sum_probs=128.6
Q ss_pred cCCCEEEEEeC-CCeEEEEECCCCcEEE--EeC-CCCceEEEE-e-cCCCEEEEEe------------------CCCcEE
Q 009993 152 ASAKLLFTSGY-DSIVRMWHLEDGFSIA--SSK-PLGCTIRAV-A-ADKKLLVAGG------------------TDGFIH 207 (520)
Q Consensus 152 ~~~~~l~sgs~-dg~v~vwd~~~~~~~~--~~~-~~~~~v~~~-~-~~~~~l~sg~------------------~dg~i~ 207 (520)
+||++++.... ++.|.+.|+.+.+... .+. +....-.++ . |++.++++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 37887777655 5679999999999877 443 232233344 3 8999998885 245788
Q ss_pred EEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecC-------------------------------
Q 009993 208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD------------------------------- 256 (520)
Q Consensus 208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d------------------------------- 256 (520)
++|..+.... +. ....+ .-.-..+..+++++++.+.+
T Consensus 179 vID~~t~~v~-~q----------I~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~ 246 (595)
T 1fwx_A 179 AVDADKWEVA-WQ----------VLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA 246 (595)
T ss_dssp EEETTTTEEE-EE----------EEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred EEECCCCeEE-EE----------EEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence 8888764311 11 01111 11111122244444444432
Q ss_pred -------CeEEEEECCC--CcE-EEEeeecc--CEEEEeeCCCEEEEEc--CCeEEEEECCCCe------------eeEE
Q 009993 257 -------MTVRVWDRAL--LKC-LKVLRHSD--WVYGLAPHDTTVASTS--GSDVYIWDTNSGC------------LLTV 310 (520)
Q Consensus 257 -------g~v~iwd~~~--~~~-~~~~~~~~--~v~~~~~~~~~l~~~~--d~~i~iwd~~~~~------------~~~~ 310 (520)
+.|.+.|.++ ++. +..+.... .-..++|||++++++. +.+|.++|+.+.+ ....
T Consensus 247 ~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~ 326 (595)
T 1fwx_A 247 AGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 326 (595)
T ss_dssp HTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred CCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence 2477888877 444 45555222 2344559999998888 6899999999653 2333
Q ss_pred eecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcc----ccceeeeeeecCCcCCE-EEE----Ee--cCCEEEE
Q 009993 311 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCT----EANVLLVATWIPHTGPV-NSL----AF--EFPWLVS 379 (520)
Q Consensus 311 ~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~----~~~~~~~~~~~~h~~~v-~~l----~~--~~~~l~s 379 (520)
+. -......++|+|+|...++...|+.|.+||+..... ......+.++..|..+- .+. .. ++++|++
T Consensus 327 v~--vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~ 404 (595)
T 1fwx_A 327 PE--LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVC 404 (595)
T ss_dssp CB--CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEE
T ss_pred cC--CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEE
Confidence 32 345678999999995455667799999999987210 00114455555554432 111 11 3467777
Q ss_pred EeC
Q 009993 380 AAG 382 (520)
Q Consensus 380 ~s~ 382 (520)
+..
T Consensus 405 ~Nk 407 (595)
T 1fwx_A 405 LSK 407 (595)
T ss_dssp EES
T ss_pred cCC
Confidence 754
No 266
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.22 E-value=0.0029 Score=57.14 Aligned_cols=209 Identities=8% Similarity=0.053 Sum_probs=120.3
Q ss_pred ccEEEEEEccCCCEEE-EEeCCCeEEEEECCCCcEEEEeCC--CCceEEEEecCCCEEE-EEeCCCcEEEEEcccCccee
Q 009993 143 EAVLTVFVLASAKLLF-TSGYDSIVRMWHLEDGFSIASSKP--LGCTIRAVAADKKLLV-AGGTDGFIHCWRAVEVLPHL 218 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~-sgs~dg~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~l~-sg~~dg~i~vwd~~~~~~~~ 218 (520)
..+.++++++++..|+ +-..++.|.+++...+........ ....-.++.+++..|+ +-...+.|.+++......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-- 113 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-- 113 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE--
Confidence 4568999999665555 555578999999876654333322 2233345566655555 445567898888754311
Q ss_pred eeccCCccccceEEeccCCCCeEEEEEc--CCEEEEEec---CCeEEEEECCCCcEEEEee--eccCEEEEe--eCCCEE
Q 009993 219 FDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSW---DMTVRVWDRALLKCLKVLR--HSDWVYGLA--PHDTTV 289 (520)
Q Consensus 219 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~---dg~v~iwd~~~~~~~~~~~--~~~~v~~~~--~~~~~l 289 (520)
.............++++ ++.|+.+.. .+.|..+++.... ...+. .......++ +++..|
T Consensus 114 -----------~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~l 181 (267)
T 1npe_A 114 -----------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQL 181 (267)
T ss_dssp -----------EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEE
T ss_pred -----------EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEE
Confidence 11111122456788884 466666654 3688888876432 22222 122344444 666666
Q ss_pred EEEc--CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCc-CC
Q 009993 290 ASTS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT-GP 366 (520)
Q Consensus 290 ~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~-~~ 366 (520)
+.+. .+.|.++|+........+. .......++.. .+.++++....+.|.++|..++ +.+..+.... ..
T Consensus 182 yv~d~~~~~I~~~~~~g~~~~~~~~--~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g------~~~~~i~~g~~~~ 252 (267)
T 1npe_A 182 CWVDAGTHRAECLNPAQPGRRKVLE--GLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAIS------KEMDTFHPHKQTR 252 (267)
T ss_dssp EEEETTTTEEEEEETTEEEEEEEEE--CCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTT------EEEEEECCSSCCC
T ss_pred EEEECCCCEEEEEecCCCceEEEec--CCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCC------CceEEEccccccc
Confidence 5555 6889999998654433332 22334566654 3444444445689999999887 4455543322 23
Q ss_pred EEEEEecC
Q 009993 367 VNSLAFEF 374 (520)
Q Consensus 367 v~~l~~~~ 374 (520)
...+++.|
T Consensus 253 p~gi~~~~ 260 (267)
T 1npe_A 253 LYGITIAL 260 (267)
T ss_dssp CCCEEEEC
T ss_pred cceeeecC
Confidence 45566544
No 267
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.12 E-value=0.0012 Score=61.62 Aligned_cols=197 Identities=10% Similarity=0.038 Sum_probs=111.9
Q ss_pred EEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccc--cc--e--EEeccCCCCeEEEEEc--CCEEEEEecCCeEE
Q 009993 189 AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQ--NT--Q--FRLWEHEGPITSLALD--LTRIYSGSWDMTVR 260 (520)
Q Consensus 189 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~--~--~~~~~h~~~v~~l~~~--~~~l~s~s~dg~v~ 260 (520)
++.+++++++++..++.|..|+..++....+........ .. . .........+..++++ ...|+.+...+.|.
T Consensus 25 ~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~ 104 (322)
T 2fp8_A 25 TFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLS 104 (322)
T ss_dssp ECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEE
T ss_pred EEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEE
Confidence 455778878888889999999876543222111000000 00 0 0000012357788885 46788887667788
Q ss_pred EEECCCCcEEEEee-----eccCEEEEe--e-CCCEEEEEcC------------------CeEEEEECCCCeeeEEeecc
Q 009993 261 VWDRALLKCLKVLR-----HSDWVYGLA--P-HDTTVASTSG------------------SDVYIWDTNSGCLLTVVNGA 314 (520)
Q Consensus 261 iwd~~~~~~~~~~~-----~~~~v~~~~--~-~~~~l~~~~d------------------~~i~iwd~~~~~~~~~~~~~ 314 (520)
.+|..++....... .......+. + ++++.++... +.|..+|..+++......
T Consensus 105 ~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-- 182 (322)
T 2fp8_A 105 VVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-- 182 (322)
T ss_dssp EECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE--
T ss_pred EEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc--
Confidence 89877554222111 112345555 6 7777666432 678999988776433322
Q ss_pred cccceEEEEecCCCCEEEEE-eCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeC---------
Q 009993 315 HVGNTKSLARSHTGDFLFTG-GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG--------- 382 (520)
Q Consensus 315 ~~~~i~~l~~s~~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~--------- 382 (520)
.......++++|+++.|+.+ ..++.|.+|++..... ........+ .+ ...+++++ ++.++...
T Consensus 183 ~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-~~~~~~~~~---~g-P~gi~~d~~G~l~va~~~~~~~~~~~~ 257 (322)
T 2fp8_A 183 ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-GTAEVLVKI---PN-PGNIKRNADGHFWVSSSEELDGNMHGR 257 (322)
T ss_dssp EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-TCEEEEEEC---SS-EEEEEECTTSCEEEEEEEETTSSTTSC
T ss_pred CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-CccceEEeC---CC-CCCeEECCCCCEEEEecCcccccccCC
Confidence 22345679999999866655 5568999999875321 111122222 23 67788865 44444433
Q ss_pred -CCcEEEEeCC
Q 009993 383 -DGKLSLIDVR 392 (520)
Q Consensus 383 -dg~i~vwd~~ 392 (520)
.+.|..+|..
T Consensus 258 ~~~~v~~~d~~ 268 (322)
T 2fp8_A 258 VDPKGIKFDEF 268 (322)
T ss_dssp EEEEEEEECTT
T ss_pred CccEEEEECCC
Confidence 3567777754
No 268
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.97 E-value=0.0039 Score=56.56 Aligned_cols=188 Identities=16% Similarity=0.195 Sum_probs=123.2
Q ss_pred CCeEEEEECCCCcEEEEeeeccCEEEEe-eCCCEEEEEcCCeEEEEECCCC-eeeEEeeccc----ccceEEEEecCCCC
Q 009993 256 DMTVRVWDRALLKCLKVLRHSDWVYGLA-PHDTTVASTSGSDVYIWDTNSG-CLLTVVNGAH----VGNTKSLARSHTGD 329 (520)
Q Consensus 256 dg~v~iwd~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~d~~i~iwd~~~~-~~~~~~~~~~----~~~i~~l~~s~~~~ 329 (520)
..++.++|+++.+.++.+.....|.-.. .+.+.|+..++..|+.|++... .+.+.+.. | ...|.....+++.+
T Consensus 86 g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT~taVyHWs~~~~s~P~kvFdR-~~~L~~~QIInY~~d~~~k 164 (365)
T 2xzh_A 86 GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDR-HSSLAGCQIINYRTDAKQK 164 (365)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEEEESSEEEEEESSTTCCCEEEEEC-CGGGTTCEEEEEEECTTSC
T ss_pred CCeEEEechHHhhhhcceecCCccEEEEecCCCeEEEEcCCcEEEEcccCCCCCceeeec-chhcccceEEEEEECCCCC
Confidence 6789999999999999999888888888 7889999999999999999754 45555542 3 34677778889999
Q ss_pred EEEEEeC-------CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC----C-EEEEEeC---CCcEEEEeCCcc
Q 009993 330 FLFTGGE-------DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF----P-WLVSAAG---DGKLSLIDVRKL 394 (520)
Q Consensus 330 ~l~tg~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~-~l~s~s~---dg~i~vwd~~~~ 394 (520)
+++..+- .|.+.+|..+.. .-+.+.+|.+.-..+..++ . .++-+.. .+.+.|-++...
T Consensus 165 W~~l~GI~~~~~~v~G~mQLYS~er~-------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~ 237 (365)
T 2xzh_A 165 WLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP 237 (365)
T ss_dssp EEEEEEEEEETTEEEEEEEEEETTTT-------EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSC
T ss_pred EEEEEeEeccCCccceeEEEEeeccc-------ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCC
Confidence 8775432 467889998776 4566778887766666643 2 3333322 268999998653
Q ss_pred cccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EEEEecCCCeEEEEeCCchHhHHH
Q 009993 395 LRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIER 458 (520)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~~~~~~~ 458 (520)
... .....+.. .++..+.. ....--.++..+.+ .+..-+.-|.|++||++++..+-.
T Consensus 238 ~~~-~~~f~kk~---vdi~fppe---a~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~ 296 (365)
T 2xzh_A 238 PTG-NQPFPKKA---VDVFFPPE---AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 296 (365)
T ss_dssp CTT-CCCCCCEE---EEECCCTT---CTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCC-CCCccccc---ceeeCCcc---ccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEE
Confidence 111 11111111 11111111 11112233444443 666777789999999999876543
No 269
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.84 E-value=0.0086 Score=56.59 Aligned_cols=188 Identities=16% Similarity=0.204 Sum_probs=124.5
Q ss_pred CCeEEEEECCCCcEEEEeeeccCEEEEe-eCCCEEEEEcCCeEEEEECCCC-eeeEEeeccc----ccceEEEEecCCCC
Q 009993 256 DMTVRVWDRALLKCLKVLRHSDWVYGLA-PHDTTVASTSGSDVYIWDTNSG-CLLTVVNGAH----VGNTKSLARSHTGD 329 (520)
Q Consensus 256 dg~v~iwd~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~d~~i~iwd~~~~-~~~~~~~~~~----~~~i~~l~~s~~~~ 329 (520)
..++.++|+++.+.++.+.....|.-.. .+.+.|+..++..|+-|++... .+.+.+.. | ...|.....+++.+
T Consensus 85 g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR-~~~L~~~QIInY~~d~~~k 163 (494)
T 1bpo_A 85 GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDR-HSSLAGCQIINYRTDAKQK 163 (494)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEEC-CGGGTTCEEEEEEECTTSS
T ss_pred CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEcCCeeEEecccCCCCchhheec-chhcccceEEEEEECCCCC
Confidence 6899999999999999998777777777 7889999999999999999754 45555542 3 34677778889999
Q ss_pred EEEEEe-------CCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-----CEEEEEeCC---CcEEEEeCCcc
Q 009993 330 FLFTGG-------EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-----PWLVSAAGD---GKLSLIDVRKL 394 (520)
Q Consensus 330 ~l~tg~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~l~s~s~d---g~i~vwd~~~~ 394 (520)
+++..+ -.|.+.+|..+.. .-+.+.||.+.-..+..++ ..++-+... +.+.|-++...
T Consensus 164 W~~l~GI~~~~~~v~G~mQLYS~er~-------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~ 236 (494)
T 1bpo_A 164 WLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP 236 (494)
T ss_dssp EEEEEEEEEETTEEEEEEEEEESTTC-------CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCC
T ss_pred eEEEEeecccCCcccceEEEeecccc-------ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCC
Confidence 877433 2477889998776 4566788888777777753 244444442 78999999653
Q ss_pred cccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC--CEEEEecCCCeEEEEeCCchHhHHH
Q 009993 395 LRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGIVRIWNFSQAFEIER 458 (520)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~v~iwd~~~~~~~~~ 458 (520)
.... ....+. ..++..+.. ....--.++..+. ..+..-+.-|.|++||++++..+-.
T Consensus 237 ~~~~-~~f~kk---~vdv~fppe---~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~ 295 (494)
T 1bpo_A 237 PTGN-QPFPKK---AVDVFFPPE---AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (494)
T ss_dssp CTTC-CCCCCE---EEECCCCTT---STTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred ccCC-CCccce---eeeeeCCcc---cccCceeEEEecccCCEEEEEecCceEEEEecccceeeee
Confidence 1111 111111 111111111 1111122333334 3677777889999999999876543
No 270
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.82 E-value=0.011 Score=54.82 Aligned_cols=188 Identities=12% Similarity=0.171 Sum_probs=112.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe----cCCC---EEEEEe-C--CCcEEEEEcccCcceeeecc
Q 009993 153 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA----ADKK---LLVAGG-T--DGFIHCWRAVEVLPHLFDIS 222 (520)
Q Consensus 153 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~----~~~~---~l~sg~-~--dg~i~vwd~~~~~~~~~~~~ 222 (520)
...++++....+-+.+||+ +|+.+..+......-..+. ..+. ++++.. . +++|.+|++......+....
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~ 117 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT 117 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence 4566777777889999999 8988888864222222222 2333 223333 3 57899998742211111110
Q ss_pred CCccccceEEeccCCCCeEEEEE--c---CC-EEEEEecCCeEEEEECC-------CCcEEEEeeeccCEEEEe--eCCC
Q 009993 223 GSEKQNTQFRLWEHEGPITSLAL--D---LT-RIYSGSWDMTVRVWDRA-------LLKCLKVLRHSDWVYGLA--PHDT 287 (520)
Q Consensus 223 ~~~~~~~~~~~~~h~~~v~~l~~--~---~~-~l~s~s~dg~v~iwd~~-------~~~~~~~~~~~~~v~~~~--~~~~ 287 (520)
.... + +..-...+..+++ + +. ++++...+|.+..|++. +.+.++++.....+..+. +...
T Consensus 118 ~~~~--p---v~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g 192 (355)
T 3amr_A 118 DPDH--P---IATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYG 192 (355)
T ss_dssp CTTS--C---EECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTT
T ss_pred cccc--C---cCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCC
Confidence 0000 0 0001144555665 3 23 68888889999999882 346677777666666655 5567
Q ss_pred EEEEEc-CCeEEEEECC-----CCeeeEEeecccc-cceEEEEe--cCCCC-EEEEEe-CCCeEEEEEcc
Q 009993 288 TVASTS-GSDVYIWDTN-----SGCLLTVVNGAHV-GNTKSLAR--SHTGD-FLFTGG-EDGAIHMYEII 346 (520)
Q Consensus 288 ~l~~~~-d~~i~iwd~~-----~~~~~~~~~~~~~-~~i~~l~~--s~~~~-~l~tg~-~dg~i~iwd~~ 346 (520)
.|+.+. +..|..+|.+ +++.+..+..++- ..+..|++ .++++ +|++++ .+++..+||..
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 777777 7668888855 3455555532332 36788887 45555 666665 57799999986
No 271
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.77 E-value=0.017 Score=53.78 Aligned_cols=239 Identities=13% Similarity=0.048 Sum_probs=123.0
Q ss_pred ccHHHhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC---CCCceEEEEe--cCCCEEEEEeCC
Q 009993 129 KSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK---PLGCTIRAVA--ADKKLLVAGGTD 203 (520)
Q Consensus 129 ~~W~~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~---~~~~~v~~~~--~~~~~l~sg~~d 203 (520)
+.|.............+.++.|.+ +..++ ++.++.|.. ..+.|+.-.... .+...+..+. .++..+++ +.+
T Consensus 66 ~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~ 141 (327)
T 2xbg_A 66 QTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMI-TNV 141 (327)
T ss_dssp SSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEE-ETT
T ss_pred CCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEE-eCC
Confidence 556654332223355788999976 44444 455665443 333343322221 1222334443 44444444 445
Q ss_pred CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEE-EEC--CCCcEEEEeeeccC
Q 009993 204 GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRV-WDR--ALLKCLKVLRHSDW 278 (520)
Q Consensus 204 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~i-wd~--~~~~~~~~~~~~~~ 278 (520)
|.| |...++. ... .....++...+..+.+ ++.+++.+ .+|.+.. +|- .+.+.+. ......
T Consensus 142 g~v--~~S~DgG---------~tW--~~~~~~~~~~~~~~~~~~~~~~~~~g-~~G~~~~S~d~gG~tW~~~~-~~~~~~ 206 (327)
T 2xbg_A 142 GAI--YRTKDSG---------KNW--QALVQEAIGVMRNLNRSPSGEYVAVS-SRGSFYSTWEPGQTAWEPHN-RTTSRR 206 (327)
T ss_dssp CCE--EEESSTT---------SSE--EEEECSCCCCEEEEEECTTSCEEEEE-TTSSEEEEECTTCSSCEEEE-CCSSSC
T ss_pred ccE--EEEcCCC---------CCC--EEeecCCCcceEEEEEcCCCcEEEEE-CCCcEEEEeCCCCCceeECC-CCCCCc
Confidence 644 3222211 111 1112234557888888 34455444 4454443 442 2333332 123445
Q ss_pred EEEEe--eCCCEEEEEcCCeEEEEECCCCeeeEEeecc---cccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccc
Q 009993 279 VYGLA--PHDTTVASTSGSDVYIWDTNSGCLLTVVNGA---HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN 353 (520)
Q Consensus 279 v~~~~--~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~ 353 (520)
+..+. +++..++++.+|.+++.+...++.-..+..+ ....+.++.+.+++..++++ .+|.| ++..+.+. .
T Consensus 207 ~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~---t 281 (327)
T 2xbg_A 207 LHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQ---T 281 (327)
T ss_dssp EEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTS---S
T ss_pred cceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCc---c
Confidence 55655 6777777777888887754434443333222 22358899999887776665 46766 34444441 1
Q ss_pred eeeeeeecCCcCCEEEEEe-cCCEEEEEeCCCcEEEEeC
Q 009993 354 VLLVATWIPHTGPVNSLAF-EFPWLVSAAGDGKLSLIDV 391 (520)
Q Consensus 354 ~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~vwd~ 391 (520)
...+.........+.++.| ++..+++++.+|.|.-++-
T Consensus 282 W~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 282 WQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp CEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred cEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 1112111123356788888 5677888889998877764
No 272
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.74 E-value=0.0098 Score=54.83 Aligned_cols=224 Identities=11% Similarity=0.025 Sum_probs=118.5
Q ss_pred CCEEEEEeC--CCeEEEEECCCCcEEE--EeCCCCceEEEEecCCCEEEEEeCC----CcEEEEEcccCcceeeeccCCc
Q 009993 154 AKLLFTSGY--DSIVRMWHLEDGFSIA--SSKPLGCTIRAVAADKKLLVAGGTD----GFIHCWRAVEVLPHLFDISGSE 225 (520)
Q Consensus 154 ~~~l~sgs~--dg~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~sg~~d----g~i~vwd~~~~~~~~~~~~~~~ 225 (520)
+.+++.|+. ...+.+||..+++-.. .+........+...++..++.|+.+ ..+.++|..+..-..
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~------- 84 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYS------- 84 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEE-------
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEE-------
Confidence 345556654 3568899988765322 2221111122233567777787765 567788876653211
Q ss_pred cccceEEeccCCCCeEEEEEcCCEEEEEecC------CeEEEEECCCCcEEEEeee---ccCEEEEeeCCCEEEEEc-C-
Q 009993 226 KQNTQFRLWEHEGPITSLALDLTRIYSGSWD------MTVRVWDRALLKCLKVLRH---SDWVYGLAPHDTTVASTS-G- 294 (520)
Q Consensus 226 ~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~l~~~~-d- 294 (520)
...+......-....+++..++.|+.+ ..+.+||..+.+-...-.. ...-.++..++++++.|+ +
T Consensus 85 ----~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 160 (306)
T 3ii7_A 85 ----KLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLG 160 (306)
T ss_dssp ----EECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEES
T ss_pred ----CCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCC
Confidence 111111122223334477777777765 4688999887654333221 111122335667666665 2
Q ss_pred --------CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCC-----CeEEEEEcccCccccceeeeeeec
Q 009993 295 --------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED-----GAIHMYEIINDCTEANVLLVATWI 361 (520)
Q Consensus 295 --------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~ 361 (520)
..+.+||+.+.+-...-.......-.+++.. ++.+++.|+.+ ..+.+||+.+..- ..+..+.
T Consensus 161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W----~~~~~~p 235 (306)
T 3ii7_A 161 NNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEW----KMVSPMP 235 (306)
T ss_dssp CTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEE----EECCCCS
T ss_pred CCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcE----EECCCCC
Confidence 3488999988753222111111111122222 56677777654 3588899877621 2222222
Q ss_pred CCcCCEEEEEecCCEEEEEeCC-----CcEEEEeCCc
Q 009993 362 PHTGPVNSLAFEFPWLVSAAGD-----GKLSLIDVRK 393 (520)
Q Consensus 362 ~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~ 393 (520)
.......++.+++..++.|+.+ ..+.+||+.+
T Consensus 236 ~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~ 272 (306)
T 3ii7_A 236 WKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTET 272 (306)
T ss_dssp CCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTT
T ss_pred CCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCC
Confidence 2223344555677777888754 4678888876
No 273
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.74 E-value=0.0065 Score=55.86 Aligned_cols=187 Identities=12% Similarity=0.046 Sum_probs=99.2
Q ss_pred EEEcCCEEEEEecC-----CeEEEEECCCCc---EEEEee--e-ccCEEEEeeCCCEEEEEc-C-----CeEEEEECCCC
Q 009993 243 LALDLTRIYSGSWD-----MTVRVWDRALLK---CLKVLR--H-SDWVYGLAPHDTTVASTS-G-----SDVYIWDTNSG 305 (520)
Q Consensus 243 l~~~~~~l~s~s~d-----g~v~iwd~~~~~---~~~~~~--~-~~~v~~~~~~~~~l~~~~-d-----~~i~iwd~~~~ 305 (520)
+..++..++.|+.+ ..+.+||..+.+ -...-. . ...-..+..++.+++.|+ + ..+.+||+.+.
T Consensus 59 ~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~ 138 (301)
T 2vpj_A 59 VSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNID 138 (301)
T ss_dssp EEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred EEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCC
Confidence 34466777777755 468999988765 322211 1 111122335677766665 3 36899999876
Q ss_pred eeeE--EeecccccceEEEEecCCCCEEEEEeCC-----CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEE
Q 009993 306 CLLT--VVNGAHVGNTKSLARSHTGDFLFTGGED-----GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLV 378 (520)
Q Consensus 306 ~~~~--~~~~~~~~~i~~l~~s~~~~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~ 378 (520)
+-.. .+..+.. .-.++.+ ++.+++.|+.+ ..+.+||+.+..- ..+..+.........+.+++..++
T Consensus 139 ~W~~~~~~p~~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~~~~~i~v 211 (301)
T 2vpj_A 139 QWSMLGDMQTARE-GAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHW----TNVTPMATKRSGAGVALLNDHIYV 211 (301)
T ss_dssp EEEEEEECSSCCB-SCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE----EEECCCSSCCBSCEEEEETTEEEE
T ss_pred eEEECCCCCCCcc-cceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcE----EeCCCCCcccccceEEEECCEEEE
Confidence 5332 2221111 1112222 66777777654 4588899877621 222222222222344555667777
Q ss_pred EEeCC-----CcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCC-----CeEEEE
Q 009993 379 SAAGD-----GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEE-----GIVRIW 448 (520)
Q Consensus 379 s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~D-----g~v~iw 448 (520)
.|+.+ ..+.+||+.+..- ..+.........|. ++..++..++.||.+ ..|.+|
T Consensus 212 ~GG~~~~~~~~~v~~yd~~~~~W-------------~~~~~~p~~r~~~~----~~~~~~~i~v~GG~~~~~~~~~v~~y 274 (301)
T 2vpj_A 212 VGGFDGTAHLSSVEAYNIRTDSW-------------TTVTSMTTPRCYVG----ATVLRGRLYAIAGYDGNSLLSSIECY 274 (301)
T ss_dssp ECCBCSSSBCCCEEEEETTTTEE-------------EEECCCSSCCBSCE----EEEETTEEEEECCBCSSSBEEEEEEE
T ss_pred EeCCCCCcccceEEEEeCCCCcE-------------EECCCCCCccccee----EEEECCEEEEEcCcCCCcccccEEEE
Confidence 77764 4688999876321 11111111112222 233466677778765 357788
Q ss_pred eCCch
Q 009993 449 NFSQA 453 (520)
Q Consensus 449 d~~~~ 453 (520)
|.++.
T Consensus 275 d~~~~ 279 (301)
T 2vpj_A 275 DPIID 279 (301)
T ss_dssp ETTTT
T ss_pred cCCCC
Confidence 87754
No 274
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.74 E-value=0.014 Score=53.71 Aligned_cols=223 Identities=12% Similarity=0.090 Sum_probs=115.9
Q ss_pred CCEEEEEeCC----CeEEEEECCCCcEEEE--eCCCCceEEEEecCCCEEEEEeCCC-----cEEEEEcccCcceeeecc
Q 009993 154 AKLLFTSGYD----SIVRMWHLEDGFSIAS--SKPLGCTIRAVAADKKLLVAGGTDG-----FIHCWRAVEVLPHLFDIS 222 (520)
Q Consensus 154 ~~~l~sgs~d----g~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~sg~~dg-----~i~vwd~~~~~~~~~~~~ 222 (520)
+.+++.|+.+ ..+..||+.+.+-... ++...........++..++.|+.++ .+.+||..+..-...
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~--- 92 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV--- 92 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEE---
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeC---
Confidence 4556666643 3578889887653221 2211111112234677777777553 477788766532111
Q ss_pred CCccccceEEeccCCCCeEEEEEcCCEEEEEecCC-----eEEEEECCCCcEEEEeeec---cCEEEEeeCCCEEEEEc-
Q 009993 223 GSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDM-----TVRVWDRALLKCLKVLRHS---DWVYGLAPHDTTVASTS- 293 (520)
Q Consensus 223 ~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg-----~v~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~l~~~~- 293 (520)
..+......-....+++..++.|+.++ .+.+||..+.+-...-..+ ....++..++++++.|+
T Consensus 93 --------~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 164 (302)
T 2xn4_A 93 --------ANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGY 164 (302)
T ss_dssp --------CCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCE
T ss_pred --------CCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCC
Confidence 111111122233344777777777653 5788898876543332211 11122335666666665
Q ss_pred C-------CeEEEEECCCCeeeEE--eecccccceEEEEecCCCCEEEEEeCC-----CeEEEEEcccCccccceeeeee
Q 009993 294 G-------SDVYIWDTNSGCLLTV--VNGAHVGNTKSLARSHTGDFLFTGGED-----GAIHMYEIINDCTEANVLLVAT 359 (520)
Q Consensus 294 d-------~~i~iwd~~~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~~~ 359 (520)
+ ..+.+||+.+.+-... +..+. .....+.+ ++.+++.|+.+ ..+.+||+.+..- ..+..
T Consensus 165 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W----~~~~~ 237 (302)
T 2xn4_A 165 DVASRQCLSTVECYNATTNEWTYIAEMSTRR-SGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAW----RQVAD 237 (302)
T ss_dssp ETTTTEECCCEEEEETTTTEEEEECCCSSCC-BSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEE----EEECC
T ss_pred CCCCCccccEEEEEeCCCCcEEECCCCcccc-ccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCE----eeCCC
Confidence 2 3488999987753322 21111 11122222 56777777764 3688999877521 12222
Q ss_pred ecCCcCCEEEEEecCCEEEEEeCCC-----cEEEEeCCcc
Q 009993 360 WIPHTGPVNSLAFEFPWLVSAAGDG-----KLSLIDVRKL 394 (520)
Q Consensus 360 ~~~h~~~v~~l~~~~~~l~s~s~dg-----~i~vwd~~~~ 394 (520)
+.........+.+++..++.|+.++ .+.+||+.+.
T Consensus 238 ~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 238 MNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp CSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 2111122234455667777777653 4889998763
No 275
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.73 E-value=0.03 Score=52.16 Aligned_cols=239 Identities=12% Similarity=0.007 Sum_probs=120.3
Q ss_pred CcccHHHhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC----CCCceEEEEecCCCEEEEEeC
Q 009993 127 DDKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK----PLGCTIRAVAADKKLLVAGGT 202 (520)
Q Consensus 127 ~~~~W~~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~l~sg~~ 202 (520)
....|+.... .-...+.+|.|.+++..+++ +.+|.| +...+.|+.-.... .....+.++..++..++.++.
T Consensus 23 ~g~~W~~~~~---~~~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~ 97 (327)
T 2xbg_A 23 DYNPWEAIQL---PTTATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGE 97 (327)
T ss_dssp SSCCEEEEEC---SCSSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEE
T ss_pred CCCCceEeec---CCCCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEEC
Confidence 4466765431 23457999999877777774 557755 33334443222211 123345555533344555556
Q ss_pred CCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEee--eccCE
Q 009993 203 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWV 279 (520)
Q Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v 279 (520)
+|.|. ...++. ...........+.+.+..+.+ ++..++.++.+|.|.. ....++.-.... ....+
T Consensus 98 ~g~i~--~S~DgG---------~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~ 165 (327)
T 2xbg_A 98 PPIML--HTTDGG---------QSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVM 165 (327)
T ss_dssp TTEEE--EESSTT---------SSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCE
T ss_pred CCeEE--EECCCC---------CCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcce
Confidence 66443 332221 111111111112344666766 4555555555665432 122233333322 34456
Q ss_pred EEEe--eCCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeee
Q 009993 280 YGLA--PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV 357 (520)
Q Consensus 280 ~~~~--~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~ 357 (520)
..+. +++.+++++.++.+..-+-..+..-..+.......+..+.+.+++..++ ++.+|.+++.+...+.. ...+
T Consensus 166 ~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~t---W~~~ 241 (327)
T 2xbg_A 166 RNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSEN---WGEL 241 (327)
T ss_dssp EEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEE---ECCC
T ss_pred EEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCe---eEec
Confidence 6665 6677887777666555432212222222234566788999999887654 45678877764332311 0111
Q ss_pred eee-cCCcCCEEEEEecC-CEEEEEeCCCcE
Q 009993 358 ATW-IPHTGPVNSLAFEF-PWLVSAAGDGKL 386 (520)
Q Consensus 358 ~~~-~~h~~~v~~l~~~~-~~l~s~s~dg~i 386 (520)
..- ..+...+.++.+.+ ..++.++.+|.|
T Consensus 242 ~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i 272 (327)
T 2xbg_A 242 LSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL 272 (327)
T ss_dssp BCTTSSCCSCEEEEEESSSSCEEEEESTTCE
T ss_pred cCCcccCCcceEEEEecCCCEEEEEeCCCeE
Confidence 110 01234588898864 455555667776
No 276
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.72 E-value=0.001 Score=68.90 Aligned_cols=234 Identities=7% Similarity=-0.048 Sum_probs=121.6
Q ss_pred cEEEEEEccCCCEEEEEeC-CCeEEEEECCCCcEEEE--eCCCC-ceEEEEecCCCEEEEEe-CC-----CcEEEEEccc
Q 009993 144 AVLTVFVLASAKLLFTSGY-DSIVRMWHLEDGFSIAS--SKPLG-CTIRAVAADKKLLVAGG-TD-----GFIHCWRAVE 213 (520)
Q Consensus 144 ~V~~l~~~~~~~~l~sgs~-dg~v~vwd~~~~~~~~~--~~~~~-~~v~~~~~~~~~l~sg~-~d-----g~i~vwd~~~ 213 (520)
...++++.+++++++.|+. +..+.+||..+++-... +.... ....++.++++.++.|+ .+ ..+.+||..+
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 3345677789999999984 46899999887643322 22111 12223336899999988 44 5688999877
Q ss_pred CcceeeeccCCccccce--EEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEee-ec---------cCEE
Q 009993 214 VLPHLFDISGSEKQNTQ--FRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HS---------DWVY 280 (520)
Q Consensus 214 ~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~---------~~v~ 280 (520)
..-.............. .....+.+.+..+.. ++..+. ......+..||..+........ .. ..-.
T Consensus 324 ~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~-~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~ 402 (656)
T 1k3i_A 324 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQ-AGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN 402 (656)
T ss_dssp TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEE-CCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred CcceeCCCccccccccccccceeecCCceEEEECCCCcEEE-ecCccceeeeecCCcceeecCCccccccccCCCCCCCc
Confidence 54221100000000000 000011222222222 222222 2223467889988776444332 11 1122
Q ss_pred EEe---eCCCEEEEEc-CC-----------eEEEEECCCCeeeEEe--ecccccceEEEEecCCCCEEEEEeCC------
Q 009993 281 GLA---PHDTTVASTS-GS-----------DVYIWDTNSGCLLTVV--NGAHVGNTKSLARSHTGDFLFTGGED------ 337 (520)
Q Consensus 281 ~~~---~~~~~l~~~~-d~-----------~i~iwd~~~~~~~~~~--~~~~~~~i~~l~~s~~~~~l~tg~~d------ 337 (520)
++. .++++++.|+ ++ .+.+||..+..-.... .......-.+++..|++++++.|+.+
T Consensus 403 av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~ 482 (656)
T 1k3i_A 403 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFE 482 (656)
T ss_dssp EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTC
T ss_pred eEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcC
Confidence 222 3677777766 32 6888898876544332 11112222345667899999998864
Q ss_pred -----CeEEEEEcccCccccceeeeeeecCCcCCEEEEEe--cCCEEEEEeC
Q 009993 338 -----GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--EFPWLVSAAG 382 (520)
Q Consensus 338 -----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~ 382 (520)
..+.+||..+..- ..+..+........+..+ +++.++.|+.
T Consensus 483 ~~~~~~~v~~ydp~t~~W----~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 483 DSTPVFTPEIYVPEQDTF----YKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCSBCCCCEEEEGGGTEE----EECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCcccceEEEcCCCCce----eecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999877621 112212111122223334 6678888875
No 277
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.72 E-value=0.029 Score=51.65 Aligned_cols=232 Identities=13% Similarity=-0.022 Sum_probs=127.1
Q ss_pred CCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEcC-C--eEEEEECCCCeeeEE
Q 009993 238 GPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTSG-S--DVYIWDTNSGCLLTV 310 (520)
Q Consensus 238 ~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~d-~--~i~iwd~~~~~~~~~ 310 (520)
.....+++ +++.+++-..++.|..||... .....+........+. ++++++++... . .|..+|..+++....
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~ 110 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL 110 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE
Confidence 55778888 456555555789999999865 3444444444566665 67886666542 2 477788888775433
Q ss_pred eecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccc-e-eeee--eecCCcCCEEEEEecCCEEE-EEeCCCc
Q 009993 311 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN-V-LLVA--TWIPHTGPVNSLAFEFPWLV-SAAGDGK 385 (520)
Q Consensus 311 ~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~-~-~~~~--~~~~h~~~v~~l~~~~~~l~-s~s~dg~ 385 (520)
...........++..+++..+++-..++.|+++|...+..... . .... .........+.+..++.+|+ +-...+.
T Consensus 111 ~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~ 190 (306)
T 2p4o_A 111 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKML 190 (306)
T ss_dssp EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTE
T ss_pred EeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCE
Confidence 3211222334555555555555555688999999765310000 0 0000 00111224556655665554 4456789
Q ss_pred EEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcc
Q 009993 386 LSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRG 465 (520)
Q Consensus 386 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~ 465 (520)
|.++++..... ... . ..+. ......-++++.++.++++....+.|.+++.. +.... ...
T Consensus 191 I~~~~~~~~g~---~~~-~--~~~~---------~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~-----~~~ 249 (306)
T 2p4o_A 191 LLRIPVDSTDK---PGE-P--EIFV---------EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTI-----IAQ 249 (306)
T ss_dssp EEEEEBCTTSC---BCC-C--EEEE---------ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEE-----EEC
T ss_pred EEEEEeCCCCC---CCc-c--EEEe---------ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEE-----Eee
Confidence 99999874100 000 0 0000 01112335667777777777777889999864 32100 000
Q ss_pred cccchhhhhccceeeec---cCCCcccccccc
Q 009993 466 IRLENRMRRRKLQTEMS---SKGGRTDQCSVA 494 (520)
Q Consensus 466 ~~~~~~~~~~~~~~~~s---~~g~~~~~~s~~ 494 (520)
. . ..-..+..++|. ||++.+..+...
T Consensus 250 ~--~-~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 250 A--E-QGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp G--G-GTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred c--c-cccCCceEEEEecccCCCCEEEEECCC
Confidence 0 0 012346789998 898888776654
No 278
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.71 E-value=0.038 Score=52.82 Aligned_cols=194 Identities=8% Similarity=-0.057 Sum_probs=109.8
Q ss_pred CCCeEEEEEc--CCEEE-EEecCCeEEEEECCCCcEEEEee-eccCE--EEEeeCCCEE-EEEc-CCeEEEEECCCCeee
Q 009993 237 EGPITSLALD--LTRIY-SGSWDMTVRVWDRALLKCLKVLR-HSDWV--YGLAPHDTTV-ASTS-GSDVYIWDTNSGCLL 308 (520)
Q Consensus 237 ~~~v~~l~~~--~~~l~-s~s~dg~v~iwd~~~~~~~~~~~-~~~~v--~~~~~~~~~l-~~~~-d~~i~iwd~~~~~~~ 308 (520)
...+..++|+ .+.|+ +-...+.|..++.........+. ..... .++.+.+..| ++-. .+.|.+.++......
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~ 194 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 194 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence 4457788884 35554 44467889999988765444333 11122 3444444444 4444 678999888755433
Q ss_pred EEeecccccceEEEEecCCCCEEEEEeC-C-CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEE-eCC
Q 009993 309 TVVNGAHVGNTKSLARSHTGDFLFTGGE-D-GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSA-AGD 383 (520)
Q Consensus 309 ~~~~~~~~~~i~~l~~s~~~~~l~tg~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~-s~d 383 (520)
..+. ........+++.|.+..|+.... . +.|..+++.... ........-...+.|++++ ..|+.+ +..
T Consensus 195 ~l~~-~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~------~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~ 267 (386)
T 3v65_B 195 VLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKH 267 (386)
T ss_dssp EEEC-SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS------CEEEECSSCSCEEEEEEEGGGTEEEEEETTT
T ss_pred Eeec-CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC------cEEEEECCCCCeeeEEEeCCCCEEEEEECCC
Confidence 3332 33456789999997776655443 4 678888876542 1112223344578999974 455444 556
Q ss_pred CcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHh
Q 009993 384 GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFE 455 (520)
Q Consensus 384 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~ 455 (520)
+.|..+|+..... ..+.... ..+... +++ ..+..+++-...+.|..++..++..
T Consensus 268 ~~I~~~d~dG~~~----------~~~~~~~------~~~P~g-iav-~~~~ly~td~~~~~V~~~~~~~G~~ 321 (386)
T 3v65_B 268 HVIERANLDGSHR----------KAVISQG------LPHPFA-ITV-FEDSLYWTDWHTKSINSANKFTGKN 321 (386)
T ss_dssp TEEEEECTTSCSC----------EEEECSS------CSSEEE-EEE-ETTEEEEEETTTTEEEEEETTTCCS
T ss_pred CEEEEEeCCCCee----------EEEEECC------CCCceE-EEE-ECCEEEEeeCCCCeEEEEECCCCcc
Confidence 7899998864210 0000000 112221 222 3334666666778888888655543
No 279
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.70 E-value=0.06 Score=59.00 Aligned_cols=181 Identities=12% Similarity=-0.001 Sum_probs=96.4
Q ss_pred cccEEEEEEccC------CCEEEEEeC-CCeEEEEECCCCcEEEEeCC-CCceE--EEEe--cCCCEEEEEeCCCcEEEE
Q 009993 142 TEAVLTVFVLAS------AKLLFTSGY-DSIVRMWHLEDGFSIASSKP-LGCTI--RAVA--ADKKLLVAGGTDGFIHCW 209 (520)
Q Consensus 142 ~~~V~~l~~~~~------~~~l~sgs~-dg~v~vwd~~~~~~~~~~~~-~~~~v--~~~~--~~~~~l~sg~~dg~i~vw 209 (520)
.+.|.|+++.|. +++++.|.. |++|+|+++.+.+.+....- ..... ..+. ....+|..|-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 457999999863 369999997 99999999987766543221 11111 1222 234578899999998766
Q ss_pred EcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCE-EEEEecCCeEEEEECCCCcEEEEeeeccCE---EEEe
Q 009993 210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTR-IYSGSWDMTVRVWDRALLKCLKVLRHSDWV---YGLA 283 (520)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~-l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v---~~~~ 283 (520)
.+......+.+ ......| ..++.-..+ .+.. ++++| +....++--+ ++....--....+ ..+.
T Consensus 633 ~~d~~tg~l~d--------~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~ 701 (1158)
T 3ei3_A 633 GLNIETGLLSD--------RKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSNVNLKEVNYMCPLN 701 (1158)
T ss_dssp EECTTTCCEEE--------EEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEEEBSSSCCCEEEEEC
T ss_pred EEcCCCCcccc--------ceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEeccChHHhceEeccC
Confidence 65432111111 1111222 234443333 2322 33333 3444444333 3322211122223 3333
Q ss_pred --eCCCEEEEEcCCeEEEEECCCCe--eeEEeecccccceEEEEecCCCCEEEEEe
Q 009993 284 --PHDTTVASTSGSDVYIWDTNSGC--LLTVVNGAHVGNTKSLARSHTGDFLFTGG 335 (520)
Q Consensus 284 --~~~~~l~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~i~~l~~s~~~~~l~tg~ 335 (520)
....-++..+++.++|..+...+ .++.+. -...+..++++|..+.++.+.
T Consensus 702 se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ip--L~~Tprri~y~~~~~~~~v~~ 755 (1158)
T 3ei3_A 702 SDGYPDSLALANNSTLTIGTIDEIQKLHIRTVP--LYESPRKICYQEVSQCFGVLS 755 (1158)
T ss_dssp CSSSTTEEEEECSSCEEEEEECCSSSEEEEEEE--CSSEEEEEEEEGGGTEEEEEE
T ss_pred cccCCCcEEEEcCCceEEEEecccCCeeEEEEe--CCCCceEEEEcCCCCEEEEEE
Confidence 12455666666778888775432 333443 345788888888877655543
No 280
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.66 E-value=0.0023 Score=67.34 Aligned_cols=193 Identities=12% Similarity=0.037 Sum_probs=106.9
Q ss_pred ccccc-cEEEEEEc-cCCCEEEEEeC-C----CeEEEEECCCC-cEEEE-eCCCCceEEEEecCCCEEEEEeCC-----C
Q 009993 139 YGHTE-AVLTVFVL-ASAKLLFTSGY-D----SIVRMWHLEDG-FSIAS-SKPLGCTIRAVAADKKLLVAGGTD-----G 204 (520)
Q Consensus 139 ~~h~~-~V~~l~~~-~~~~~l~sgs~-d----g~v~vwd~~~~-~~~~~-~~~~~~~v~~~~~~~~~l~sg~~d-----g 204 (520)
++|.- .+...+|| |||++||-+.. + .+|+++|+.++ +.+.. +... ..-..+++|++.|+....| .
T Consensus 169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~-~~~~~WspDg~~l~y~~~d~~~~~~ 247 (751)
T 2xe4_A 169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGT-NGEIVWGPDHTSLFYVTKDETLREN 247 (751)
T ss_dssp TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEE-CSCCEECSSTTEEEEEEECTTCCEE
T ss_pred cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCc-eeeEEEecCCCEEEEEEECCCCCCC
Confidence 34543 68889999 99998885432 2 35999999998 63211 1110 1123577999888777665 2
Q ss_pred cEEEEEcccCcceeeeccCCccccceEEec-cCCCCeEEEEE--cCCEEEEEec---CCeEEEEECCCCc-EE--EEe-e
Q 009993 205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLAL--DLTRIYSGSW---DMTVRVWDRALLK-CL--KVL-R 274 (520)
Q Consensus 205 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~s~s~---dg~v~iwd~~~~~-~~--~~~-~ 274 (520)
.|.++++.++.. .....+. ........+.| |+++|+..+. ...|.++|+.++. .. ..+ .
T Consensus 248 ~v~~~~lgt~~~-----------~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~ 316 (751)
T 2xe4_A 248 KVWRHVMGKLQS-----------EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP 316 (751)
T ss_dssp EEEEEETTSCGG-----------GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC
T ss_pred EEEEEECCCCch-----------hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec
Confidence 467777655421 1111111 22234556677 7787776553 3468888988752 12 333 2
Q ss_pred -eccCEEEEe-eCCCEEEEEc--C----CeEEEEECCCC-eeeE-EeecccccceEEEEecCCCCEEEEEeCCCeEEEEE
Q 009993 275 -HSDWVYGLA-PHDTTVASTS--G----SDVYIWDTNSG-CLLT-VVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE 344 (520)
Q Consensus 275 -~~~~v~~~~-~~~~~l~~~~--d----~~i~iwd~~~~-~~~~-~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd 344 (520)
......++. ..+..|+..+ + ..|..+|+.++ .... .+.......+..+.+. .+.++++...+|..++|-
T Consensus 317 ~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 317 REKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp CCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEE
T ss_pred CCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence 344555555 4566555443 3 25778887753 2222 2321112234555554 334556677778655443
No 281
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.65 E-value=0.0096 Score=54.75 Aligned_cols=189 Identities=13% Similarity=0.090 Sum_probs=98.1
Q ss_pred EEEcCCEEEEEecC-----CeEEEEECCCCcEEEEee--e-ccCEEEEeeCCCEEEEEc-C-----CeEEEEECCCCeee
Q 009993 243 LALDLTRIYSGSWD-----MTVRVWDRALLKCLKVLR--H-SDWVYGLAPHDTTVASTS-G-----SDVYIWDTNSGCLL 308 (520)
Q Consensus 243 l~~~~~~l~s~s~d-----g~v~iwd~~~~~~~~~~~--~-~~~v~~~~~~~~~l~~~~-d-----~~i~iwd~~~~~~~ 308 (520)
+..++..++.|+.+ ..+.+||..+.+-...-. . ...-..+..++.+++.|+ + ..+.+||+.+.+-.
T Consensus 58 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 137 (302)
T 2xn4_A 58 VYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWF 137 (302)
T ss_dssp EEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred EEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence 33466777777755 358889988765433322 1 111222335677777666 4 35889999877533
Q ss_pred EEeecccccceEEEEecCCCCEEEEEeCC-------CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEe
Q 009993 309 TVVNGAHVGNTKSLARSHTGDFLFTGGED-------GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAA 381 (520)
Q Consensus 309 ~~~~~~~~~~i~~l~~s~~~~~l~tg~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s 381 (520)
..-.......-.+++. -++.+++.|+.+ ..+.+||+.+..- ..+..+.........+.+++..++.|+
T Consensus 138 ~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG 212 (302)
T 2xn4_A 138 HVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEW----TYIAEMSTRRSGAGVGVLNNLLYAVGG 212 (302)
T ss_dssp EECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEE----EEECCCSSCCBSCEEEEETTEEEEECC
T ss_pred ecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcE----EECCCCccccccccEEEECCEEEEECC
Confidence 2211111111112222 256666666543 3488899876621 122222222222344555677777777
Q ss_pred CC-----CcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCC-----eEEEEeCC
Q 009993 382 GD-----GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEG-----IVRIWNFS 451 (520)
Q Consensus 382 ~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg-----~v~iwd~~ 451 (520)
.+ ..+.+||+.+..- ..+.........|. ++..++..++.||.++ .|.+||..
T Consensus 213 ~~~~~~~~~~~~yd~~~~~W-------------~~~~~~~~~r~~~~----~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 275 (302)
T 2xn4_A 213 HDGPLVRKSVEVYDPTTNAW-------------RQVADMNMCRRNAG----VCAVNGLLYVVGGDDGSCNLASVEYYNPT 275 (302)
T ss_dssp BSSSSBCCCEEEEETTTTEE-------------EEECCCSSCCBSCE----EEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred CCCCcccceEEEEeCCCCCE-------------eeCCCCCCccccCe----EEEECCEEEEECCcCCCcccccEEEEcCC
Confidence 64 3688899876311 11111111112222 2334666778887654 47888887
Q ss_pred ch
Q 009993 452 QA 453 (520)
Q Consensus 452 ~~ 453 (520)
+.
T Consensus 276 ~~ 277 (302)
T 2xn4_A 276 TD 277 (302)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 282
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.63 E-value=0.011 Score=54.29 Aligned_cols=227 Identities=15% Similarity=0.113 Sum_probs=117.7
Q ss_pred CCCEEEEEe-CC-----CeEEEEECCCCcEEE--EeCCCCceEEEEecCCCEEEEEeCC-----CcEEEEEcccCcceee
Q 009993 153 SAKLLFTSG-YD-----SIVRMWHLEDGFSIA--SSKPLGCTIRAVAADKKLLVAGGTD-----GFIHCWRAVEVLPHLF 219 (520)
Q Consensus 153 ~~~~l~sgs-~d-----g~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~~~~~ 219 (520)
++.+++.|+ .+ ..+.+||..+++-.. .+........+...++..++.|+.+ ..+.+||..+.....+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W 93 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW 93 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence 455666666 32 368889988765322 1221111122233567777777765 4588888776541001
Q ss_pred eccCCccccceEEeccCCCCeEEEEEcCCEEEEEecC-----CeEEEEECCCCcEEEEee--ec-cCEEEEeeCCCEEEE
Q 009993 220 DISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD-----MTVRVWDRALLKCLKVLR--HS-DWVYGLAPHDTTVAS 291 (520)
Q Consensus 220 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-----g~v~iwd~~~~~~~~~~~--~~-~~v~~~~~~~~~l~~ 291 (520)
. ....+......-..+.+++..++.|+.+ ..+.+||..+.+-...-. .. ..-.++..++++++.
T Consensus 94 ~--------~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 165 (301)
T 2vpj_A 94 Y--------SVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCL 165 (301)
T ss_dssp E--------EECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEE
T ss_pred E--------ECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEE
Confidence 0 1111111112222333466667777654 368899988765433222 11 111223356777776
Q ss_pred Ec-C-----CeEEEEECCCCeeeEEeecccc-cceEEEEecCCCCEEEEEeCC-----CeEEEEEcccCccccceeeeee
Q 009993 292 TS-G-----SDVYIWDTNSGCLLTVVNGAHV-GNTKSLARSHTGDFLFTGGED-----GAIHMYEIINDCTEANVLLVAT 359 (520)
Q Consensus 292 ~~-d-----~~i~iwd~~~~~~~~~~~~~~~-~~i~~l~~s~~~~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~~~ 359 (520)
|+ + ..+.+||+.+.+-...-..... .....+.+ ++.+++.|+.+ ..+.+||+.+..- ..+..
T Consensus 166 GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W----~~~~~ 239 (301)
T 2vpj_A 166 GGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSW----TTVTS 239 (301)
T ss_dssp CCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE----EEECC
T ss_pred CCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcE----EECCC
Confidence 65 3 4589999988753322111111 11122222 56777777764 4688999877631 22222
Q ss_pred ecCCcCCEEEEEecCCEEEEEeCC-----CcEEEEeCCc
Q 009993 360 WIPHTGPVNSLAFEFPWLVSAAGD-----GKLSLIDVRK 393 (520)
Q Consensus 360 ~~~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~ 393 (520)
+.........+.+++..++.|+.+ ..|.+||+.+
T Consensus 240 ~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 240 MTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPII 278 (301)
T ss_dssp CSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTT
T ss_pred CCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCC
Confidence 222222234455566777777655 3577888765
No 283
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.62 E-value=0.018 Score=53.08 Aligned_cols=226 Identities=11% Similarity=0.015 Sum_probs=115.0
Q ss_pred CEEEEEeCC--CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecC----CeEEEEECCCCc
Q 009993 195 KLLVAGGTD--GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD----MTVRVWDRALLK 268 (520)
Q Consensus 195 ~~l~sg~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d----g~v~iwd~~~~~ 268 (520)
.+++.|+.+ ..+.+||..+..-... ..+......-..+.+++..++.|+.+ ..+.+||..+.+
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~-----------~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~ 81 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDI-----------RCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDS 81 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEEC-----------CCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTE
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecC-----------CCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCe
Confidence 355566653 5688888776532111 11111122223334577777777755 678899998775
Q ss_pred EEEEeee---ccCEEEEeeCCCEEEEEc-C------CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC--
Q 009993 269 CLKVLRH---SDWVYGLAPHDTTVASTS-G------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-- 336 (520)
Q Consensus 269 ~~~~~~~---~~~v~~~~~~~~~l~~~~-d------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~-- 336 (520)
-...-.. ...-..+..++.+++.|+ + ..+.+||+.+.+-...-.......-.+++. -++.+++.|+.
T Consensus 82 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~ 160 (306)
T 3ii7_A 82 WYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLG 160 (306)
T ss_dssp EEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEES
T ss_pred EEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCC
Confidence 4333221 111122235666766665 4 459999998875332211111111111222 25666666654
Q ss_pred -------CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCC-----CcEEEEeCCcccccCCCCCCC
Q 009993 337 -------DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGD-----GKLSLIDVRKLLRSGRPTSGK 404 (520)
Q Consensus 337 -------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~ 404 (520)
-..+.+||+.+..- ..+..+......-..+.+++..++.|+.+ ..+.+||+.+..-
T Consensus 161 ~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W-------- 228 (306)
T 3ii7_A 161 NNVSGRVLNSCEVYDPATETW----TELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEW-------- 228 (306)
T ss_dssp CTTTCEECCCEEEEETTTTEE----EEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEE--------
T ss_pred CCCcccccceEEEeCCCCCeE----EECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcE--------
Confidence 34588899877621 12222222222233444566677776653 4588888876321
Q ss_pred ceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCC-----CeEEEEeCCch
Q 009993 405 RVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEE-----GIVRIWNFSQA 453 (520)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~D-----g~v~iwd~~~~ 453 (520)
..+........+| .++..++..++.||.+ ..+.+||..+.
T Consensus 229 -----~~~~~~p~~r~~~----~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 229 -----KMVSPMPWKGVTV----KCAAVGSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp -----EECCCCSCCBSCC----EEEEETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred -----EECCCCCCCccce----eEEEECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 1111111111222 2333466688888854 46788888764
No 284
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.55 E-value=0.04 Score=48.89 Aligned_cols=198 Identities=11% Similarity=0.056 Sum_probs=117.5
Q ss_pred hhccccccEEEEEEccCCCEEE-EEeCCCeEEEEECCCCcEEEEeCC---CCceEEEEecCCCEEEEEeCCCcEEEEEcc
Q 009993 137 VLYGHTEAVLTVFVLASAKLLF-TSGYDSIVRMWHLEDGFSIASSKP---LGCTIRAVAADKKLLVAGGTDGFIHCWRAV 212 (520)
Q Consensus 137 ~l~~h~~~V~~l~~~~~~~~l~-sgs~dg~v~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~ 212 (520)
.+.|-.+.+..++++|++..|+ +...++.|...|.. ++.+..+.- ....-.++..++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4556667899999999866555 46778889999987 887777632 222333444666666665567788888876
Q ss_pred cCcceeeeccCCccccceEEe----ccCCCCeEEEEEc--CCEEEEEecCCeEEEEECC---CCcEEEEeee--------
Q 009993 213 EVLPHLFDISGSEKQNTQFRL----WEHEGPITSLALD--LTRIYSGSWDMTVRVWDRA---LLKCLKVLRH-------- 275 (520)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~~--~~~l~s~s~dg~v~iwd~~---~~~~~~~~~~-------- 275 (520)
.... +.. .....+ ...+.....|+++ ++.|+++.......+|.+. ....+..+..
T Consensus 100 ~~~~-i~~-------~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~ 171 (255)
T 3qqz_A 100 PNSE-VKI-------LKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFT 171 (255)
T ss_dssp TTCC-EEE-------EEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCC
T ss_pred CCCe-eee-------eeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccc
Confidence 5431 000 001111 1245667899994 4577777766555555543 1112222211
Q ss_pred ccCEEEEe--eC-CCEEEEEc-CCeEEEEECCCCeeeEEeec--cc------ccceEEEEecCCCCEEEEEeCCCeEEEE
Q 009993 276 SDWVYGLA--PH-DTTVASTS-GSDVYIWDTNSGCLLTVVNG--AH------VGNTKSLARSHTGDFLFTGGEDGAIHMY 343 (520)
Q Consensus 276 ~~~v~~~~--~~-~~~l~~~~-d~~i~iwd~~~~~~~~~~~~--~~------~~~i~~l~~s~~~~~l~tg~~dg~i~iw 343 (520)
...+.+++ |. +++++... +..+.++|... +.+..+.. +. ......|+|.++|++.++ ++.+.++.|
T Consensus 172 ~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 172 LDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp SSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred cCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 11223333 43 44555555 68899999764 45544432 21 136789999999985554 787777766
Q ss_pred Ec
Q 009993 344 EI 345 (520)
Q Consensus 344 d~ 345 (520)
.-
T Consensus 250 ~~ 251 (255)
T 3qqz_A 250 TP 251 (255)
T ss_dssp EC
T ss_pred Ee
Confidence 53
No 285
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.47 E-value=0.089 Score=51.02 Aligned_cols=144 Identities=7% Similarity=-0.008 Sum_probs=84.6
Q ss_pred EEEec-CCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecC-C----eE
Q 009993 188 RAVAA-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD-M----TV 259 (520)
Q Consensus 188 ~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d-g----~v 259 (520)
.+++| ++..|+.+...+.|..+|..++. ...+.........+++ +++.|+.+... + .+
T Consensus 142 lavdp~~~g~Lyv~d~~~~I~~id~~~~~--------------v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v 207 (430)
T 3tc9_A 142 LSFDPKNHNHLYLVGEQHPTRLIDFEKEY--------------VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNN 207 (430)
T ss_dssp EEEETTEEEEEEEEEBTEEEEEEETTTTE--------------EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEE
T ss_pred EEECCCCCCeEEEEeCCCcEEEEECCCCE--------------EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceE
Confidence 45666 35556666555778888876542 2222234456788888 56756665542 1 34
Q ss_pred EEEECCCCcEE--EEee---eccCEEEEee-CCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEE-
Q 009993 260 RVWDRALLKCL--KVLR---HSDWVYGLAP-HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFL- 331 (520)
Q Consensus 260 ~iwd~~~~~~~--~~~~---~~~~v~~~~~-~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l- 331 (520)
...+.. +... ..+. ++..+ ++.+ ++.++++-. ++.|..+|...+........+.......++|+|+|++|
T Consensus 208 ~~~~~~-g~~~~~~~l~~~~~p~gi-avdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~ly 285 (430)
T 3tc9_A 208 YILTRE-SGFKVITELTKGQNCNGA-ETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAY 285 (430)
T ss_dssp EEEEGG-GTSCSEEEEEECSSCCCE-EECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEE
T ss_pred EEEeCC-CceeeeeeeccCCCceEE-EEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEE
Confidence 444432 2211 2222 32222 3456 566666655 78999999987765333322223457899999999954
Q ss_pred EEEeCCCeEEEEEccc
Q 009993 332 FTGGEDGAIHMYEIIN 347 (520)
Q Consensus 332 ~tg~~dg~i~iwd~~~ 347 (520)
++-...+.|..++...
T Consensus 286 v~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 286 IVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEETTTTEEEEEEEET
T ss_pred EEECCCCEEEEEeCCc
Confidence 4555678899988764
No 286
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.44 E-value=0.08 Score=49.73 Aligned_cols=150 Identities=7% Similarity=-0.082 Sum_probs=90.5
Q ss_pred CCCeEEEEEc--CCEEEEE-ecCCeEEEEECCCCcEEEEee-eccCEE--EEeeCCC-EEEEEc-CCeEEEEECCCCeee
Q 009993 237 EGPITSLALD--LTRIYSG-SWDMTVRVWDRALLKCLKVLR-HSDWVY--GLAPHDT-TVASTS-GSDVYIWDTNSGCLL 308 (520)
Q Consensus 237 ~~~v~~l~~~--~~~l~s~-s~dg~v~iwd~~~~~~~~~~~-~~~~v~--~~~~~~~-~l~~~~-d~~i~iwd~~~~~~~ 308 (520)
...+..++|+ .+.|+.. ...+.|..+++........+. ...... ++.+.+. ++++-. .+.|.+.++......
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 151 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 151 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE
Confidence 3457788884 3555544 467889999988765443333 112223 3444444 444444 688999998765433
Q ss_pred EEeecccccceEEEEecCCCCEEEEE-eCC-CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEE-eCC
Q 009993 309 TVVNGAHVGNTKSLARSHTGDFLFTG-GED-GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSA-AGD 383 (520)
Q Consensus 309 ~~~~~~~~~~i~~l~~s~~~~~l~tg-~~d-g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~-s~d 383 (520)
..+. ........++++|.+..|+.. ... +.|..+++.... ........-...+.|++++ ..|+.+ +..
T Consensus 152 ~l~~-~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~------~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~ 224 (349)
T 3v64_C 152 VLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKH 224 (349)
T ss_dssp EEEC-TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS------CEESCCSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred EEEe-CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC------cEEEEECCCCCcceEEEeCCCCEEEEEECCC
Confidence 3332 344567899999966655544 344 778888876542 1111122344678999975 455444 456
Q ss_pred CcEEEEeCCc
Q 009993 384 GKLSLIDVRK 393 (520)
Q Consensus 384 g~i~vwd~~~ 393 (520)
+.|..+|+..
T Consensus 225 ~~I~~~~~dG 234 (349)
T 3v64_C 225 HVIERANLDG 234 (349)
T ss_dssp TEEEEEETTS
T ss_pred CEEEEEeCCC
Confidence 7899999864
No 287
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.43 E-value=0.082 Score=49.65 Aligned_cols=229 Identities=10% Similarity=-0.061 Sum_probs=126.4
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCc-eEEEEecCCCEEE-EEeCCCcEEEEEcccCcceeee
Q 009993 143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC-TIRAVAADKKLLV-AGGTDGFIHCWRAVEVLPHLFD 220 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~l~-sg~~dg~i~vwd~~~~~~~~~~ 220 (520)
+..+|.+..++. +|+.+. ...|+..++.............. .-.++.+.+..|+ +-...+.|..++......
T Consensus 34 d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~---- 107 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV---- 107 (349)
T ss_dssp TSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----
T ss_pred CCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc----
Confidence 344566666644 444333 34588888876554444433322 2234555555444 445567888888765421
Q ss_pred ccCCccccceEEeccCCCCeEEEEEc--CCEE-EEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-
Q 009993 221 ISGSEKQNTQFRLWEHEGPITSLALD--LTRI-YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS- 293 (520)
Q Consensus 221 ~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l-~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~- 293 (520)
.............++++ ++.| ++-...+.|.+.++........+. .-.....++ |.+..++.+.
T Consensus 108 ---------~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~ 178 (349)
T 3v64_C 108 ---------EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW 178 (349)
T ss_dssp ---------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEEC
T ss_pred ---------eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEecc
Confidence 11111122334566663 4444 555556889999987554333332 223344544 5455555444
Q ss_pred -C-CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEE-eCCCeEEEEEcccCccccceeeeeeecCCcCCEEEE
Q 009993 294 -G-SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTG-GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL 370 (520)
Q Consensus 294 -d-~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l 370 (520)
. +.|..+++..... ..+........+.++++|++..|+.+ ...+.|..+|+.... ....+.........+
T Consensus 179 ~~~~~I~r~~~dG~~~-~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~------~~~~~~~~~~~P~gi 251 (349)
T 3v64_C 179 GNTPRIEASSMDGSGR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH------RKAVISQGLPHPFAI 251 (349)
T ss_dssp SSSCEEEEEETTSCSC-EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS------CEEEECSSCSSEEEE
T ss_pred CCCCEEEEEeCCCCCc-EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc------eEEEEeCCCCCceEE
Confidence 4 7788888865432 22221234457899999877766655 446789999987542 111122233456777
Q ss_pred EecCCEEEEE-eCCCcEEEEeCCc
Q 009993 371 AFEFPWLVSA-AGDGKLSLIDVRK 393 (520)
Q Consensus 371 ~~~~~~l~s~-s~dg~i~vwd~~~ 393 (520)
++....|+.+ ...+.|..++..+
T Consensus 252 av~~~~ly~td~~~~~V~~~~~~~ 275 (349)
T 3v64_C 252 TVFEDSLYWTDWHTKSINSANKFT 275 (349)
T ss_dssp EEETTEEEEEETTTTEEEEEETTT
T ss_pred EEECCEEEEecCCCCeEEEEEccC
Confidence 7766555444 4567788877544
No 288
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.43 E-value=0.057 Score=51.57 Aligned_cols=191 Identities=10% Similarity=-0.001 Sum_probs=109.3
Q ss_pred ccEEEEEEccCCC-EEEEEeCCCeEEEEECCCCcEEEEeCC--CCceEEEEecCCC-EEEEEeCCCcEEEEEcccCccee
Q 009993 143 EAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSKP--LGCTIRAVAADKK-LLVAGGTDGFIHCWRAVEVLPHL 218 (520)
Q Consensus 143 ~~V~~l~~~~~~~-~l~sgs~dg~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~ 218 (520)
..+..++|++.+. ++++-...+.|..+++..+.....+.. ....-.++.+.+. ++++-...+.|.+.++....
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~--- 192 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--- 192 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS---
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc---
Confidence 4578899997555 444555678899999876654333221 1222345565444 44455556677777654321
Q ss_pred eeccCCccccceEEeccCCCCeEEEEEc--CCEEEEEe-cC-CeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEE
Q 009993 219 FDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGS-WD-MTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVAS 291 (520)
Q Consensus 219 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s-~d-g~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~ 291 (520)
....+.........++++ +..|+... .. +.|..+++.......... .-...+.++ +++..|+.
T Consensus 193 ----------~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~ 262 (386)
T 3v65_B 193 ----------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYW 262 (386)
T ss_dssp ----------CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEE
T ss_pred ----------eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEE
Confidence 111122233556788885 45555544 33 678888876543332222 222344554 55555555
Q ss_pred Ec--CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993 292 TS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND 348 (520)
Q Consensus 292 ~~--d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~ 348 (520)
+. .+.|..+|+........+. ........+++ ..+.++++-...+.|..++..++
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 263 VDAKHHVIERANLDGSHRKAVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp EETTTTEEEEECTTSCSCEEEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred EECCCCEEEEEeCCCCeeEEEEE-CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence 54 6889999987543333332 23445677777 34556666667788888886555
No 289
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.40 E-value=0.022 Score=52.52 Aligned_cols=224 Identities=11% Similarity=0.036 Sum_probs=114.7
Q ss_pred CCCEEEEEeCC----CeEEEEECCCCcEEEE--eCCCCceEEEEecCCCEEEEEeC----C-----CcEEEEEcccCcce
Q 009993 153 SAKLLFTSGYD----SIVRMWHLEDGFSIAS--SKPLGCTIRAVAADKKLLVAGGT----D-----GFIHCWRAVEVLPH 217 (520)
Q Consensus 153 ~~~~l~sgs~d----g~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~sg~~----d-----g~i~vwd~~~~~~~ 217 (520)
++.+++.|+.+ ..+.+||..+++-... +............++.+++.|+. + ..+.++|..+..-.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~ 103 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 103 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence 46677777632 3688999887653321 11111111122346677777765 2 45777887665321
Q ss_pred eeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecC-----CeEEEEECCCCcEEEEeeec---cCEEEEeeCCCEE
Q 009993 218 LFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD-----MTVRVWDRALLKCLKVLRHS---DWVYGLAPHDTTV 289 (520)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-----g~v~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~l 289 (520)
.. ..+......-....+++..++.|+.+ ..+.+||..+.+-...-..+ ..-.++..++.++
T Consensus 104 ~~-----------~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iy 172 (308)
T 1zgk_A 104 PC-----------APMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLY 172 (308)
T ss_dssp EC-----------CCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEE
T ss_pred EC-----------CCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEE
Confidence 11 01111112223334467777777643 36888998876543322211 1112223466666
Q ss_pred EEEc-C-----CeEEEEECCCCeeeEEeeccc-ccceEEEEecCCCCEEEEEeCC-----CeEEEEEcccCccccceeee
Q 009993 290 ASTS-G-----SDVYIWDTNSGCLLTVVNGAH-VGNTKSLARSHTGDFLFTGGED-----GAIHMYEIINDCTEANVLLV 357 (520)
Q Consensus 290 ~~~~-d-----~~i~iwd~~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~ 357 (520)
+.|+ + ..+.+||+.+.+-...-.... ......+.+ ++.+++.|+.+ ..+.+||+.+..- ..+
T Consensus 173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W----~~~ 246 (308)
T 1zgk_A 173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETW----TFV 246 (308)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE----EEC
T ss_pred EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcE----EEC
Confidence 6665 3 458999998764322111011 111122222 56777777664 4589999877621 122
Q ss_pred eeecCCcCCEEEEEecCCEEEEEeCC-----CcEEEEeCCc
Q 009993 358 ATWIPHTGPVNSLAFEFPWLVSAAGD-----GKLSLIDVRK 393 (520)
Q Consensus 358 ~~~~~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~ 393 (520)
..+.........+..++..++.|+.+ ..+.+||+.+
T Consensus 247 ~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~ 287 (308)
T 1zgk_A 247 APMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDT 287 (308)
T ss_dssp CCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred CCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCC
Confidence 22222222233444566777777654 3577888765
No 290
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.40 E-value=0.1 Score=50.05 Aligned_cols=198 Identities=14% Similarity=0.016 Sum_probs=113.0
Q ss_pred cCCCCeEEEEEc--CCEEEEE-ecCCeEEEEECCCC----cEEEEee-eccCEEEEe--e-CCCEEEEEc-CCeEEEEEC
Q 009993 235 EHEGPITSLALD--LTRIYSG-SWDMTVRVWDRALL----KCLKVLR-HSDWVYGLA--P-HDTTVASTS-GSDVYIWDT 302 (520)
Q Consensus 235 ~h~~~v~~l~~~--~~~l~s~-s~dg~v~iwd~~~~----~~~~~~~-~~~~v~~~~--~-~~~~l~~~~-d~~i~iwd~ 302 (520)
.....+..++|+ .+.|+.. ...+.|+.+++... .....+. .......++ + .++++++-. .+.|.+.++
T Consensus 109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~ 188 (400)
T 3p5b_L 109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 188 (400)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeC
Confidence 345677889984 4555554 45678988988652 2222222 223444555 4 344444444 688999998
Q ss_pred CCCeeeEEeecccccceEEEEecCCCCEEEEEeC--CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEE
Q 009993 303 NSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE--DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLV 378 (520)
Q Consensus 303 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~ 378 (520)
........+. ........+++.|.+..|+.... .+.|...++.... ........-...+.|++++ ..|+
T Consensus 189 ~g~~~~~l~~-~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~------~~~~~~~~l~~P~glavd~~~~~lY 261 (400)
T 3p5b_L 189 KGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD------IYSLVTENIQWPNGITLDLLSGRLY 261 (400)
T ss_dssp TTCSEEEEEE-CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS------CEEEECSSCSCEEEEEEETTTTEEE
T ss_pred CCCceEEEEe-CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc------cEEEEECCCCceEEEEEEeCCCEEE
Confidence 8665444443 24456789999997766665543 3678888886552 1122223335678999984 4555
Q ss_pred EE-eCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC-EEEEecCCCeEEEEeCCchHhH
Q 009993 379 SA-AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEI 456 (520)
Q Consensus 379 s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~~ 456 (520)
.+ +..+.|...|+..... ..+... .+......+++.+++ .+++-...+.|..++..++..+
T Consensus 262 ~aD~~~~~I~~~d~dG~~~----------~~~~~~-------~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 262 WVDSKLHSISSIDVNGGNR----------KTILED-------EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV 324 (400)
T ss_dssp EEETTTTEEEEEETTSCCC----------EEEEEC-------SSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCC
T ss_pred EEECCCCEEEEEeCCCCcc----------EEEEeC-------CCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCce
Confidence 55 4567899999864211 001000 001111223344444 6666667788998987666544
No 291
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.38 E-value=0.034 Score=51.17 Aligned_cols=227 Identities=10% Similarity=0.001 Sum_probs=114.2
Q ss_pred cCCCEEEEEeCC----CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEec----C-----Ce
Q 009993 192 ADKKLLVAGGTD----GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSW----D-----MT 258 (520)
Q Consensus 192 ~~~~~l~sg~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~----d-----g~ 258 (520)
.++.+++.|+.+ ..+.++|..+..-.... .+......-..+..++..++.|+. + ..
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~-----------~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~ 91 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLA-----------DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSA 91 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECC-----------CCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCC
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECC-----------CCCcccccceEEEECCEEEEECCCcCCCCCCeecce
Confidence 556667777642 35777887665321110 011111111223346666777765 2 45
Q ss_pred EEEEECCCCcEEEEee---eccCEEEEeeCCCEEEEEc-C-----CeEEEEECCCCeeeEE--eecccccceEEEEecCC
Q 009993 259 VRVWDRALLKCLKVLR---HSDWVYGLAPHDTTVASTS-G-----SDVYIWDTNSGCLLTV--VNGAHVGNTKSLARSHT 327 (520)
Q Consensus 259 v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~l~~~~-d-----~~i~iwd~~~~~~~~~--~~~~~~~~i~~l~~s~~ 327 (520)
+.+||..+.+-...-. ....-..+..++++++.|+ + ..+.+||+.+.+-... +..+ ...-..+.+ +
T Consensus 92 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~--~ 168 (308)
T 1zgk_A 92 LDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR-RIGVGVAVL--N 168 (308)
T ss_dssp EEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSC-CBSCEEEEE--T
T ss_pred EEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCcc-ccceEEEEE--C
Confidence 8889988765333221 1111122335677776665 3 4689999987643221 1111 111122222 5
Q ss_pred CCEEEEEeCC-----CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCC-----CcEEEEeCCccccc
Q 009993 328 GDFLFTGGED-----GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGD-----GKLSLIDVRKLLRS 397 (520)
Q Consensus 328 ~~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~~~~~ 397 (520)
+.+++.|+.+ ..+.+||+.+..- ..+..+.........+.+++..++.|+.+ ..+.+||+.+..-
T Consensus 169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W- 243 (308)
T 1zgk_A 169 RLLYAVGGFDGTNRLNSAECYYPERNEW----RMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW- 243 (308)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEE----EECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE-
T ss_pred CEEEEEeCCCCCCcCceEEEEeCCCCeE----eeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcE-
Confidence 6677777654 4588899876521 11222222222234455566777777654 5688999876321
Q ss_pred CCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCC-----CeEEEEeCCch
Q 009993 398 GRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEE-----GIVRIWNFSQA 453 (520)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~D-----g~v~iwd~~~~ 453 (520)
..+.........|. ++..++.+++.||.+ ..|.+||..+.
T Consensus 244 ------------~~~~~~p~~r~~~~----~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 244 ------------TFVAPMKHRRSALG----ITVHQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp ------------EECCCCSSCCBSCE----EEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred ------------EECCCCCCCccceE----EEEECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 11111111112222 223456677778754 35677877654
No 292
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.36 E-value=0.091 Score=48.58 Aligned_cols=191 Identities=9% Similarity=-0.041 Sum_probs=108.2
Q ss_pred CeEEEEEc--CCEE-EEEecCCeEEEEECCCCcEE-EEee-eccCE--EEEeeCCC-EEEEEc-CCeEEEEECCCCeeeE
Q 009993 239 PITSLALD--LTRI-YSGSWDMTVRVWDRALLKCL-KVLR-HSDWV--YGLAPHDT-TVASTS-GSDVYIWDTNSGCLLT 309 (520)
Q Consensus 239 ~v~~l~~~--~~~l-~s~s~dg~v~iwd~~~~~~~-~~~~-~~~~v--~~~~~~~~-~l~~~~-d~~i~iwd~~~~~~~~ 309 (520)
.+..++|+ .+.| ++-...+.|..++....... ..+. .-... .++.+.+. ++++-. .+.|.++++.......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 45677884 3444 45456788999998766321 1222 11223 33444344 444444 6889999987543333
Q ss_pred EeecccccceEEEEecCCCCEEEEEeC--CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEE-eCCC
Q 009993 310 VVNGAHVGNTKSLARSHTGDFLFTGGE--DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSA-AGDG 384 (520)
Q Consensus 310 ~~~~~~~~~i~~l~~s~~~~~l~tg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~-s~dg 384 (520)
.+. ........+++.|.+..|+.... .+.|..+++.... ........-...+.|++++ ..|+.+ +..+
T Consensus 116 l~~-~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~------~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~ 188 (318)
T 3sov_A 116 LFW-QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS------RFIIINSEIYWPNGLTLDYEEQKLYWADAKLN 188 (318)
T ss_dssp EEC-SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS------CEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred EEe-CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC------eEEEEECCCCCccEEEEeccCCEEEEEECCCC
Confidence 332 34456789999997666665553 5788888876542 1111122234678999975 455544 4568
Q ss_pred cEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC-EEEEecCCCeEEEEeCCchHh
Q 009993 385 KLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFE 455 (520)
Q Consensus 385 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~ 455 (520)
.|..+|+..... ..+ ..+.......++.+++ .+++-...+.|..++..++..
T Consensus 189 ~I~~~d~dG~~~----------~~~---------~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 189 FIHKSNLDGTNR----------QAV---------VKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EEEEEETTSCSC----------EEE---------ECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCS
T ss_pred EEEEEcCCCCce----------EEE---------ecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCc
Confidence 899999864210 000 0111111223333444 566666778899999876654
No 293
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.30 E-value=0.0001 Score=69.42 Aligned_cols=45 Identities=38% Similarity=0.506 Sum_probs=41.8
Q ss_pred cccCCCHHHHHHHccCCChhhhHHHhhhhhhHHHhhcCcchhhhh
Q 009993 63 TITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEF 107 (520)
Q Consensus 63 ~~~~LP~el~~~i~~~L~~~~l~~~s~v~~~~~~~~~~~~lW~~~ 107 (520)
.+..||+|++.+||+||+..++.+++.|||+|+.++.+..+|+.+
T Consensus 8 ~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l 52 (336)
T 2ast_B 8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (336)
T ss_dssp CSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred ChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence 378999999999999999999999999999999999888888764
No 294
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.28 E-value=0.11 Score=47.96 Aligned_cols=214 Identities=13% Similarity=-0.006 Sum_probs=116.9
Q ss_pred CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc--CCEEEEE-ecCCeEEEEECCC----CcEEEEee-e
Q 009993 204 GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSG-SWDMTVRVWDRAL----LKCLKVLR-H 275 (520)
Q Consensus 204 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~-s~dg~v~iwd~~~----~~~~~~~~-~ 275 (520)
..|+..|+.+... . .+......+..++|+ ++.|+.+ ..++.|..+++.. ......+. .
T Consensus 10 ~~I~~i~~~~~~~-------------~-~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~ 75 (316)
T 1ijq_A 10 HEVRKMTLDRSEY-------------T-SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD 75 (316)
T ss_dssp SSEEEEETTSCCC-------------E-EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS
T ss_pred CeEEEEECCCcce-------------E-ehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC
Confidence 4688888765421 1 122234567788884 4555544 4568999999876 22222222 1
Q ss_pred ccCEEEEe--eCCCEE-EEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCC--CeEEEEEcccCc
Q 009993 276 SDWVYGLA--PHDTTV-ASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED--GAIHMYEIINDC 349 (520)
Q Consensus 276 ~~~v~~~~--~~~~~l-~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d--g~i~iwd~~~~~ 349 (520)
......++ +.+..| ++-. .+.|.++|+........+. ........++++|.+..|+.+... +.|..+++....
T Consensus 76 ~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~ 154 (316)
T 1ijq_A 76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 154 (316)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred CCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE-CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC
Confidence 12233444 444444 4444 6889999987554333332 234567899999977766555443 688888876541
Q ss_pred cccceeeeeeecCCcCCEEEEEecC--CEEEEE-eCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceee
Q 009993 350 TEANVLLVATWIPHTGPVNSLAFEF--PWLVSA-AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNL 426 (520)
Q Consensus 350 ~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 426 (520)
........-...+.|++++ ..|+.+ +..+.|..+|+..... ..+..... ...+.
T Consensus 155 ------~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~----------~~~~~~~~----~~~~P--- 211 (316)
T 1ijq_A 155 ------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR----------KTILEDEK----RLAHP--- 211 (316)
T ss_dssp ------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----------EEEEECTT----TTSSE---
T ss_pred ------eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce----------EEEeecCC----ccCCc---
Confidence 1111122345678999974 455544 4567899999864210 01110000 01122
Q ss_pred EEEEecCC-EEEEecCCCeEEEEeCCchHh
Q 009993 427 LSVDIGAD-RIVCGGEEGIVRIWNFSQAFE 455 (520)
Q Consensus 427 ~~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~ 455 (520)
..+..+++ .+++-...+.|..++..++..
T Consensus 212 ~giav~~~~ly~~d~~~~~V~~~~~~~g~~ 241 (316)
T 1ijq_A 212 FSLAVFEDKVFWTDIINEAIFSANRLTGSD 241 (316)
T ss_dssp EEEEEETTEEEEEETTTTEEEEEETTTCCC
T ss_pred EEEEEECCEEEEEECCCCeEEEEeCCCCcc
Confidence 22333344 666666778899998766654
No 295
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.26 E-value=0.34 Score=53.13 Aligned_cols=211 Identities=11% Similarity=0.082 Sum_probs=125.8
Q ss_pred eEEEEECCCCcEEEEeC-CCCceEEEEe----c--CCCEEEEEe----------CCCcEEEEEcccCcceeeeccCCccc
Q 009993 165 IVRMWHLEDGFSIASSK-PLGCTIRAVA----A--DKKLLVAGG----------TDGFIHCWRAVEVLPHLFDISGSEKQ 227 (520)
Q Consensus 165 ~v~vwd~~~~~~~~~~~-~~~~~v~~~~----~--~~~~l~sg~----------~dg~i~vwd~~~~~~~~~~~~~~~~~ 227 (520)
.|++.|..+.+.+..+. .....+.++. . ...++++|. ..|.|.++++..+. .
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k-----------L 876 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK-----------L 876 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTE-----------E
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCE-----------E
Confidence 36777777777665543 2233344443 1 246888886 34778888876321 1
Q ss_pred cceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEE-EeeeccC--EEEEeeCCCEEEEEc-CCeEEE--E
Q 009993 228 NTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLK-VLRHSDW--VYGLAPHDTTVASTS-GSDVYI--W 300 (520)
Q Consensus 228 ~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~--v~~~~~~~~~l~~~~-d~~i~i--w 300 (520)
..+ .-....++|++++- +| +|++|- ..+|++|++...+.+. ...+-.. +..+...++++++|. -..|.+ |
T Consensus 877 ~lv-~~~~v~g~v~al~~~~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y 953 (1158)
T 3ei3_A 877 QTV-AEKEVKGAVYSMVEFNG-KLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAY 953 (1158)
T ss_dssp EEE-EEEEESSCEEEEEEETT-EEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEE
T ss_pred EEE-EEEEcCCcCEEEeeeCC-EEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEE
Confidence 112 22235788999987 55 555554 4789999998665444 1112222 335656678888887 444444 5
Q ss_pred ECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccc----cceeeeeeecCCcCCEEEEEe---c
Q 009993 301 DTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE----ANVLLVATWIPHTGPVNSLAF---E 373 (520)
Q Consensus 301 d~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~----~~~~~~~~~~~h~~~v~~l~~---~ 373 (520)
+...++....-.......++++.+-.+ ..++.+..+|.+.++........ ........+. ....|+++.- .
T Consensus 954 ~~~~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fh-lG~~vt~~~~~sl~ 1031 (1158)
T 3ei3_A 954 KPMEGNFEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFH-LGEFVNVFCHGSLV 1031 (1158)
T ss_dssp ETTTTEEEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEE-CSSCEEEEEECCSC
T ss_pred EcCCCeEEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEe-CCCcEeeEEeeeee
Confidence 666665554444446678888888644 57888999999999987653211 1112222221 1345676652 1
Q ss_pred C-----------CEEEEEeCCCcEEEEeC
Q 009993 374 F-----------PWLVSAAGDGKLSLIDV 391 (520)
Q Consensus 374 ~-----------~~l~s~s~dg~i~vwd~ 391 (520)
+ ..++.++.+|.|.+.-.
T Consensus 1032 ~~~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A 1032 MQNLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp CC-------CEEEEEEEEETTSCEEEEEE
T ss_pred cCCCccccccccceEEEEecCCEEEEEEE
Confidence 1 24788889999887643
No 296
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.22 E-value=0.1 Score=48.13 Aligned_cols=218 Identities=10% Similarity=0.018 Sum_probs=111.7
Q ss_pred EEEEEeCCCeEEEEECCCCcEEE-EeCC--CCceEEEEecCCCEEEEEeC----C-------CcEEEEEcccCcceeeec
Q 009993 156 LLFTSGYDSIVRMWHLEDGFSIA-SSKP--LGCTIRAVAADKKLLVAGGT----D-------GFIHCWRAVEVLPHLFDI 221 (520)
Q Consensus 156 ~l~sgs~dg~v~vwd~~~~~~~~-~~~~--~~~~v~~~~~~~~~l~sg~~----d-------g~i~vwd~~~~~~~~~~~ 221 (520)
+++.|+ ..+.+||..+++-.. .+.. ..........++..++.|+. + ..+.+||..+..-...
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~-- 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM-- 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC--
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC--
Confidence 344555 568999998876432 2221 12222333467888888874 1 1266777765532111
Q ss_pred cCCccccceEEeccCCCCeEEEEEcCCEEEEEecC--------CeEEEEECCCCcEEEEee--e-ccCEEEEeeCCCEEE
Q 009993 222 SGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD--------MTVRVWDRALLKCLKVLR--H-SDWVYGLAPHDTTVA 290 (520)
Q Consensus 222 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d--------g~v~iwd~~~~~~~~~~~--~-~~~v~~~~~~~~~l~ 290 (520)
..+......-....+++..++.|+.+ ..+.+||..+.+-...-. . ...-.++..++++++
T Consensus 83 ---------~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 153 (315)
T 4asc_A 83 ---------PPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYV 153 (315)
T ss_dssp ---------CCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEE
T ss_pred ---------CCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEE
Confidence 00111111112233466666777642 458899998765332211 1 111122336666666
Q ss_pred EEcC-------CeEEEEECCCCeeeE--EeecccccceEEEEecCCCCEEEEEeCCC-----eEEEEEcccCccccceee
Q 009993 291 STSG-------SDVYIWDTNSGCLLT--VVNGAHVGNTKSLARSHTGDFLFTGGEDG-----AIHMYEIINDCTEANVLL 356 (520)
Q Consensus 291 ~~~d-------~~i~iwd~~~~~~~~--~~~~~~~~~i~~l~~s~~~~~l~tg~~dg-----~i~iwd~~~~~~~~~~~~ 356 (520)
.|+. ..+.+||+.+.+-.. .+..+ .....++.+ ++++++.|+.++ .+.+||+.+..- ..
T Consensus 154 ~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W----~~ 226 (315)
T 4asc_A 154 IGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTA-RSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKW----AP 226 (315)
T ss_dssp ECCBCTTSCBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEE----EE
T ss_pred EeCCCCCCcccceEEEEeCCCCeEEECCCCCCc-hhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeE----EE
Confidence 6652 469999998764322 11111 111122222 567777777654 488888876621 22
Q ss_pred eeeecCCcCCEEEEEecCCEEEEEeCCC--------------cEEEEeCCc
Q 009993 357 VATWIPHTGPVNSLAFEFPWLVSAAGDG--------------KLSLIDVRK 393 (520)
Q Consensus 357 ~~~~~~h~~~v~~l~~~~~~l~s~s~dg--------------~i~vwd~~~ 393 (520)
+..+.........+.+++..++.|+.++ .+.+||+.+
T Consensus 227 ~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~ 277 (315)
T 4asc_A 227 FEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEE 277 (315)
T ss_dssp ECCCSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTT
T ss_pred CCCCCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCC
Confidence 2222222223344556677777777632 367788765
No 297
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.11 E-value=0.36 Score=50.52 Aligned_cols=151 Identities=14% Similarity=0.036 Sum_probs=89.6
Q ss_pred CCCCeEEEEEc--CCEEE-EEecCCeEEEEECCCC----cEEEEee-eccCEEE--EeeCCCEEEEE-c-CCeEEEEECC
Q 009993 236 HEGPITSLALD--LTRIY-SGSWDMTVRVWDRALL----KCLKVLR-HSDWVYG--LAPHDTTVAST-S-GSDVYIWDTN 303 (520)
Q Consensus 236 h~~~v~~l~~~--~~~l~-s~s~dg~v~iwd~~~~----~~~~~~~-~~~~v~~--~~~~~~~l~~~-~-d~~i~iwd~~ 303 (520)
....+..|+++ .+.|+ +-...+.|+.+++... .....+. ....... +.+.++.|+.+ . .+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 45567788884 34544 4455678888888653 2222222 2222333 44555445444 4 6889999998
Q ss_pred CCeeeEEeecccccceEEEEecCCCCEEEEEeC--CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEE
Q 009993 304 SGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE--DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVS 379 (520)
Q Consensus 304 ~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s 379 (520)
.......+. ........|++.|.+.+|+.... .+.|...++.... ........-...+.|++++ ..|+.
T Consensus 502 G~~~~~l~~-~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~------~~~lv~~~l~~P~GLavD~~~~~LYw 574 (791)
T 3m0c_C 502 GVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD------IYSLVTENIQWPNGITLDLLSGRLYW 574 (791)
T ss_dssp SSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC------EEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred CCeEEEEEe-CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc------eEEEEeCCCCCceEEEEecCCCeEEE
Confidence 654433333 34456889999998666665543 2678888886552 2222223345788999874 55555
Q ss_pred Ee-CCCcEEEEeCCc
Q 009993 380 AA-GDGKLSLIDVRK 393 (520)
Q Consensus 380 ~s-~dg~i~vwd~~~ 393 (520)
+. ..+.|...++..
T Consensus 575 aD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 575 VDSKLHSISSIDVNG 589 (791)
T ss_dssp EETTTTEEEEEETTS
T ss_pred EeCCCCcEEEEecCC
Confidence 54 457788888864
No 298
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.09 E-value=0.081 Score=55.51 Aligned_cols=190 Identities=11% Similarity=0.088 Sum_probs=100.5
Q ss_pred eEEEEE---cCCEEEEEec-C----CeEEEEECCCC-cEEEE-eeeccCEEEEeeCCCEEEEEc-C-----CeEEEEECC
Q 009993 240 ITSLAL---DLTRIYSGSW-D----MTVRVWDRALL-KCLKV-LRHSDWVYGLAPHDTTVASTS-G-----SDVYIWDTN 303 (520)
Q Consensus 240 v~~l~~---~~~~l~s~s~-d----g~v~iwd~~~~-~~~~~-~~~~~~v~~~~~~~~~l~~~~-d-----~~i~iwd~~ 303 (520)
+....| |+++|+.+.. + .+|+++|+.++ +.+.. +.....-...+++++.|+... + ..|+++++.
T Consensus 176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lg 255 (751)
T 2xe4_A 176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMG 255 (751)
T ss_dssp EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETT
T ss_pred EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECC
Confidence 444444 4566554332 2 35999999998 63211 111111123458887777665 4 258889988
Q ss_pred CCee--eEEeecccccceEEEEecCCCCEEEEEeC---CCeEEEEEcccCccccceee--eeeecCCcCCEEEEEe-cCC
Q 009993 304 SGCL--LTVVNGAHVGNTKSLARSHTGDFLFTGGE---DGAIHMYEIINDCTEANVLL--VATWIPHTGPVNSLAF-EFP 375 (520)
Q Consensus 304 ~~~~--~~~~~~~~~~~i~~l~~s~~~~~l~tg~~---dg~i~iwd~~~~~~~~~~~~--~~~~~~h~~~v~~l~~-~~~ 375 (520)
++.. ...+..........+.|+|||++|+..+. ...|+++|+.++.. .. ........+...++.| .++
T Consensus 256 t~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~----~~~~~~l~~~~~~~~~s~~~~~g~ 331 (751)
T 2xe4_A 256 KLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA----HNTLEIVRPREKGVRYDVQMHGTS 331 (751)
T ss_dssp SCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT----CCCEEESSCCCTTCCEEEEEETTT
T ss_pred CCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC----CceeEEeecCCCCceEEEeeeeCC
Confidence 7642 22332223344567899999998876553 34588888876521 11 1112234456677774 355
Q ss_pred EEEEE-eCC----CcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC-EEEEecCCCeEEEEe
Q 009993 376 WLVSA-AGD----GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWN 449 (520)
Q Consensus 376 ~l~s~-s~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd 449 (520)
.|+.. ..+ ..|..+|+.+.... .. ..........+..+.+.++ ++++...||..++|-
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~---------~~-------~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQPSDW---------SH-------VLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTSTTCC---------CC-------EEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEE
T ss_pred EEEEEeCCCCCCCcEEEEEcCCCcccc---------ee-------eEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEE
Confidence 44444 333 25666665431000 00 0001112224455666666 566777778655543
No 299
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.08 E-value=0.11 Score=49.24 Aligned_cols=154 Identities=13% Similarity=0.177 Sum_probs=96.3
Q ss_pred EeeCCCEEEEEcCCeEEEEECCCCeeeEEeeccc---ccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccc-----
Q 009993 282 LAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAH---VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN----- 353 (520)
Q Consensus 282 ~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~----- 353 (520)
+..++.-++.+.++.||.-++......+.+...+ -..+..+..+|+|.+||..+ +..|.|-.+..+.....
T Consensus 28 ~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 28 SSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp EETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred EEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 3466777777778888888887554444544332 23678899999999999885 45799998874321111
Q ss_pred -eeeeeeecC------CcCCEEEEEecC-----CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcc--cc
Q 009993 354 -VLLVATWIP------HTGPVNSLAFEF-----PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQR--ML 419 (520)
Q Consensus 354 -~~~~~~~~~------h~~~v~~l~~~~-----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 419 (520)
......+.- ...+|..+.|+| ..|++-..|+.|++||+........ . +..... -.
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~--------~---L~k~~~~fg~ 175 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI--------V---LNKPNNSFGL 175 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE--------E---ESCCCSEEES
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc--------c---hhccccccCC
Confidence 001112111 357899999987 5999999999999999986211100 0 010000 11
Q ss_pred cCcceeeEEEEecCC----EEEEecCCCeEEE
Q 009993 420 HGFECNLLSVDIGAD----RIVCGGEEGIVRI 447 (520)
Q Consensus 420 ~~~~~~v~~~~~~~~----~l~sg~~Dg~v~i 447 (520)
......+.+++|.++ ++++.+..|-|+-
T Consensus 176 d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 176 DARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp CSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred CcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 122245667777665 6666778888864
No 300
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.06 E-value=0.035 Score=60.55 Aligned_cols=196 Identities=16% Similarity=0.191 Sum_probs=122.8
Q ss_pred cCCeEEEEECCCCcEEEEeeeccCEEEEe-eCCCEEEEEcCCeEEEEECCCC-eeeEEeeccc----ccceEEEEecCCC
Q 009993 255 WDMTVRVWDRALLKCLKVLRHSDWVYGLA-PHDTTVASTSGSDVYIWDTNSG-CLLTVVNGAH----VGNTKSLARSHTG 328 (520)
Q Consensus 255 ~dg~v~iwd~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~d~~i~iwd~~~~-~~~~~~~~~~----~~~i~~l~~s~~~ 328 (520)
...++.|+|+++.+.++.+..+..|.-.. .+.+.++..++..|+.|++... .+.+.+. .| ...|..-..+++.
T Consensus 84 ag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fd-R~~~L~~~QIinY~~d~~~ 162 (1630)
T 1xi4_A 84 AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFD-RHSSLAGCQIINYRTDAKQ 162 (1630)
T ss_pred cCCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcCCeEEEeccCCCCccHHHHh-cchhcccCeeEEeeeCCCC
Confidence 36799999999999999888777888777 7888999999999999999753 3444443 23 4567777788899
Q ss_pred CEEEEEe-------CCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC----CEEEE-EeC---CCcEEEEeCCc
Q 009993 329 DFLFTGG-------EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF----PWLVS-AAG---DGKLSLIDVRK 393 (520)
Q Consensus 329 ~~l~tg~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~s-~s~---dg~i~vwd~~~ 393 (520)
++++..| -.|.+.+|+.... ..+.+.||.+.-..+..++ ..|++ +.. .+.+.|-++..
T Consensus 163 kW~~l~gi~~~~~~v~G~mQLyS~er~-------~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~ 235 (1630)
T 1xi4_A 163 KWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT 235 (1630)
T ss_pred CeEEEEeeccCCCcccceeeeeecccc-------cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCC
Confidence 9877433 3588999998766 3455667776665555532 23333 222 37899999865
Q ss_pred ccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhh
Q 009993 394 LLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARAL 463 (520)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~ 463 (520)
..... +...+.. ..+..+......+. ..+.++..-..+..-+.-|.|.++|++++..+-......
T Consensus 236 ~~~~~-~~f~kk~---~~~~~~~~~~~Dfp-v~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~ 300 (1630)
T 1xi4_A 236 PPTGN-QPFPKKA---VDVFFPPEAQNDFP-VAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG 300 (1630)
T ss_pred CccCC-CCCcccc---ccccCCcccccCcc-eEEEeccccCEEEEEecCceEEEEecccchhhhhccccC
Confidence 31111 1111110 01111110011111 122233333466677778999999999999887654333
No 301
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.04 E-value=0.26 Score=47.70 Aligned_cols=188 Identities=12% Similarity=0.099 Sum_probs=103.6
Q ss_pred cEEEEEEccC--CCEEEEEeCCCeEEEEECCCCcEEEEeCCC-CceEEEEecCCCEEEEEeCCC----c-EEEEEcccCc
Q 009993 144 AVLTVFVLAS--AKLLFTSGYDSIVRMWHLEDGFSIASSKPL-GCTIRAVAADKKLLVAGGTDG----F-IHCWRAVEVL 215 (520)
Q Consensus 144 ~V~~l~~~~~--~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~l~sg~~dg----~-i~vwd~~~~~ 215 (520)
....++++|+ +..|+.+...+.|+.+|..++......... ...-.++.++++ |+.+...+ . +...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~- 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG- 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT-
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC-
Confidence 3568899984 344555544488999999877655443322 233456668888 44444321 1 222222111
Q ss_pred ceeeeccCCccccceEEeccCCCCeEEEEEc--CCEEE-EEecCCeEEEEECCCCcEEEEe-e--eccCE--EEEeeCCC
Q 009993 216 PHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIY-SGSWDMTVRVWDRALLKCLKVL-R--HSDWV--YGLAPHDT 287 (520)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~-s~s~dg~v~iwd~~~~~~~~~~-~--~~~~v--~~~~~~~~ 287 (520)
......+. .......++++ ...|+ +-..++.|+.+|..++.....+ . ....- .++.++++
T Consensus 218 -----------~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~ 285 (433)
T 4hw6_A 218 -----------FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGD 285 (433)
T ss_dssp -----------TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSS
T ss_pred -----------eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCC
Confidence 00001111 12334456663 23444 4446788999999877663332 2 11222 45558888
Q ss_pred EEEEEc--CCeEEEEECC--CCee--eEEeec--c------------cccceEEEEe---------cCCCCEEEEEeCCC
Q 009993 288 TVASTS--GSDVYIWDTN--SGCL--LTVVNG--A------------HVGNTKSLAR---------SHTGDFLFTGGEDG 338 (520)
Q Consensus 288 ~l~~~~--d~~i~iwd~~--~~~~--~~~~~~--~------------~~~~i~~l~~---------s~~~~~l~tg~~dg 338 (520)
.|+.+. .+.|+.++.. ++.. ...+.. + .-.....+++ .++|.++++-...+
T Consensus 286 ~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~ 365 (433)
T 4hw6_A 286 WAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSH 365 (433)
T ss_dssp EEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTT
T ss_pred EEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCC
Confidence 555554 6889998865 3321 112211 0 1124667888 67777777777778
Q ss_pred eEEEEEc
Q 009993 339 AIHMYEI 345 (520)
Q Consensus 339 ~i~iwd~ 345 (520)
.|+.++.
T Consensus 366 ~I~~~~~ 372 (433)
T 4hw6_A 366 TVRVLTP 372 (433)
T ss_dssp EEEEECT
T ss_pred EEEEECC
Confidence 8999885
No 302
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.99 E-value=0.22 Score=46.00 Aligned_cols=213 Identities=10% Similarity=-0.054 Sum_probs=117.1
Q ss_pred CCeEEEEECCCCc--EEEEeCCC-CceEEEEecC-CCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCC
Q 009993 163 DSIVRMWHLEDGF--SIASSKPL-GCTIRAVAAD-KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEG 238 (520)
Q Consensus 163 dg~v~vwd~~~~~--~~~~~~~~-~~~v~~~~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 238 (520)
...|+..++.... ......+. .....++.+. +.++++-...+.|..++...+.. ....+...-.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~------------~~~~~~~~l~ 79 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES------------VQNVVVSGLL 79 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC------------CCEEEEECCS
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc------------eEEEEcCCCC
Confidence 4678999987663 11111111 1112334443 44555555667888888755420 0111111223
Q ss_pred CeEEEEEc--CCE-EEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc---CCeEEEEECCCCeeeE
Q 009993 239 PITSLALD--LTR-IYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS---GSDVYIWDTNSGCLLT 309 (520)
Q Consensus 239 ~v~~l~~~--~~~-l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~---d~~i~iwd~~~~~~~~ 309 (520)
....++++ ++. +++-...+.|.++++........+. .......+. +.+..++.+. .+.|...++.......
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~ 159 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI 159 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE
Confidence 44566663 444 4454566889999987543332222 223345554 5445554444 3678888876433222
Q ss_pred EeecccccceEEEEecCCCCEEEEE-eCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEE-EEEeCCCcEE
Q 009993 310 VVNGAHVGNTKSLARSHTGDFLFTG-GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWL-VSAAGDGKLS 387 (520)
Q Consensus 310 ~~~~~~~~~i~~l~~s~~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l-~s~s~dg~i~ 387 (520)
... ..-...+.++++|++..|+.+ +..+.|..+|+..... ..+ ..+.......++++...+ ++-...+.|.
T Consensus 160 ~~~-~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~----~~~--~~~~~~~P~glav~~~~lywtd~~~~~V~ 232 (318)
T 3sov_A 160 IIN-SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR----QAV--VKGSLPHPFALTLFEDILYWTDWSTHSIL 232 (318)
T ss_dssp EEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEE--ECSCCSCEEEEEEETTEEEEEETTTTEEE
T ss_pred EEE-CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce----EEE--ecCCCCCceEEEEeCCEEEEEecCCCeEE
Confidence 222 234457899999977766655 4567899999875421 111 122345567788766544 4444567899
Q ss_pred EEeCCcc
Q 009993 388 LIDVRKL 394 (520)
Q Consensus 388 vwd~~~~ 394 (520)
.++..++
T Consensus 233 ~~~~~~G 239 (318)
T 3sov_A 233 ACNKYTG 239 (318)
T ss_dssp EEETTTC
T ss_pred EEECCCC
Confidence 8988654
No 303
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.97 E-value=0.17 Score=46.65 Aligned_cols=220 Identities=10% Similarity=0.048 Sum_probs=109.9
Q ss_pred EEEEEeCCCeEEEEECCCCcEEE-EeCC--CCceEEEEecCCCEEEEEeC----CC-------cEEEEEcccCcceeeec
Q 009993 156 LLFTSGYDSIVRMWHLEDGFSIA-SSKP--LGCTIRAVAADKKLLVAGGT----DG-------FIHCWRAVEVLPHLFDI 221 (520)
Q Consensus 156 ~l~sgs~dg~v~vwd~~~~~~~~-~~~~--~~~~v~~~~~~~~~l~sg~~----dg-------~i~vwd~~~~~~~~~~~ 221 (520)
+++.|+. .+..||..+++-.. .... ..........++..++.|+. ++ .+.++|..+..-...
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~-- 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL-- 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC--
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC--
Confidence 4444543 38899998876433 1211 11222233467788888873 12 166677665432111
Q ss_pred cCCccccceEEeccCCCCeEEEEEcCCEEEEEecC-------CeEEEEECCCCcEEEEeeeccC---EEEEeeCCCEEEE
Q 009993 222 SGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD-------MTVRVWDRALLKCLKVLRHSDW---VYGLAPHDTTVAS 291 (520)
Q Consensus 222 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-------g~v~iwd~~~~~~~~~~~~~~~---v~~~~~~~~~l~~ 291 (520)
..+...........+++..++.|+.+ ..+.+||..+.+-...-..+.+ -.++..++.+++.
T Consensus 94 ---------~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 164 (318)
T 2woz_A 94 ---------PPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCL 164 (318)
T ss_dssp ---------SCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEE
T ss_pred ---------CCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEE
Confidence 01111111222333467777777754 3578889887654333221111 1122366776666
Q ss_pred Ec-C------CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCC-----CeEEEEEcccCccccceeeeee
Q 009993 292 TS-G------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED-----GAIHMYEIINDCTEANVLLVAT 359 (520)
Q Consensus 292 ~~-d------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~~~ 359 (520)
|+ + ..+.+||+.+.+-...-.......-.+++.. ++.+++.|+.+ ..+.+||+.+..- ..+..
T Consensus 165 GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W----~~~~~ 239 (318)
T 2woz_A 165 GGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKW----EVMTE 239 (318)
T ss_dssp CCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCE----EECCC
T ss_pred cCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeE----EECCC
Confidence 65 2 3599999988753222111111111122222 56777777653 3477888876521 22222
Q ss_pred ecCCcCCEEEEEecCCEEEEEeCC--------------CcEEEEeCCc
Q 009993 360 WIPHTGPVNSLAFEFPWLVSAAGD--------------GKLSLIDVRK 393 (520)
Q Consensus 360 ~~~h~~~v~~l~~~~~~l~s~s~d--------------g~i~vwd~~~ 393 (520)
+.........+.+++..++.|+.+ ..+.+||+.+
T Consensus 240 ~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~ 287 (318)
T 2woz_A 240 FPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK 287 (318)
T ss_dssp CSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTT
T ss_pred CCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCC
Confidence 222222234455566677776653 3577777765
No 304
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.91 E-value=0.2 Score=44.30 Aligned_cols=161 Identities=11% Similarity=0.084 Sum_probs=101.2
Q ss_pred EeccCCCCeEEEEEc--CCEEE-EEecCCeEEEEECCCCcEEEEeeec--cCEEEEe--eCCCEEEEEc-CCeEEEEECC
Q 009993 232 RLWEHEGPITSLALD--LTRIY-SGSWDMTVRVWDRALLKCLKVLRHS--DWVYGLA--PHDTTVASTS-GSDVYIWDTN 303 (520)
Q Consensus 232 ~~~~h~~~v~~l~~~--~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~--~~v~~~~--~~~~~l~~~~-d~~i~iwd~~ 303 (520)
.+.+-...+..++++ ++.|+ +...++.|...|.. ++.+..+... ...-.++ .++.++++.. ++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 455666789999995 45555 46678899999997 8888877522 3445555 5566555554 6889999876
Q ss_pred CCee---eEEeec-----ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeee--e--cCCcCCEEEEE
Q 009993 304 SGCL---LTVVNG-----AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT--W--IPHTGPVNSLA 371 (520)
Q Consensus 304 ~~~~---~~~~~~-----~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~--~--~~h~~~v~~l~ 371 (520)
.... +..... ........++++|.++.|+++.+.....+|.+.............. + ..+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 5432 222211 2344568999999998888887776666776652100000111100 0 11234578899
Q ss_pred ecC---CEEEEEeCCCcEEEEeCCc
Q 009993 372 FEF---PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 372 ~~~---~~l~s~s~dg~i~vwd~~~ 393 (520)
++| .+++.......|.++|...
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~g 204 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLVG 204 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCCC
Confidence 987 3566666677888888764
No 305
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.90 E-value=0.34 Score=46.85 Aligned_cols=147 Identities=8% Similarity=0.003 Sum_probs=82.2
Q ss_pred cEEEEEEcc-CCCEEEEEeCCCeEEEEECCCCcEEEEeCC-CCceEEEEecCCCEEEEEeC-CC----cEEEEEcccCcc
Q 009993 144 AVLTVFVLA-SAKLLFTSGYDSIVRMWHLEDGFSIASSKP-LGCTIRAVAADKKLLVAGGT-DG----FIHCWRAVEVLP 216 (520)
Q Consensus 144 ~V~~l~~~~-~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sg~~-dg----~i~vwd~~~~~~ 216 (520)
....|+++| ++..|+.+...+.|+.+|+.++........ ....-.++.++++.|+.+.. ++ .+...+. .+..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCce
Confidence 457889998 455566665558899999987654433332 22334566788886666554 22 2333332 2210
Q ss_pred eeeeccCCccccceEEeccCCCCeEEEEEc---CCEEEEEecCCeEEEEECCCCcEEEEee--eccCEE--EEeeCCCEE
Q 009993 217 HLFDISGSEKQNTQFRLWEHEGPITSLALD---LTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVY--GLAPHDTTV 289 (520)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~--~~~~~~~~l 289 (520)
.....+. .......++++ +..+++-..++.|..++..++....... ...... ++.++++++
T Consensus 217 -----------~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~l 284 (430)
T 3tc9_A 217 -----------KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYA 284 (430)
T ss_dssp -----------CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred -----------eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEE
Confidence 0001111 12234556673 3444455567899999998765433332 112233 444888855
Q ss_pred EEEc--CCeEEEEECC
Q 009993 290 ASTS--GSDVYIWDTN 303 (520)
Q Consensus 290 ~~~~--d~~i~iwd~~ 303 (520)
+.+. .+.|..++..
T Consensus 285 yv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 285 YIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEEETTTTEEEEEEEE
T ss_pred EEEECCCCEEEEEeCC
Confidence 5554 6889998765
No 306
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.90 E-value=0.18 Score=46.43 Aligned_cols=142 Identities=11% Similarity=-0.022 Sum_probs=75.3
Q ss_pred cCCEEEEEec----C-------CeEEEEECCCCcEEEEeeeccCE---EEEeeCCCEEEEEc-C--------CeEEEEEC
Q 009993 246 DLTRIYSGSW----D-------MTVRVWDRALLKCLKVLRHSDWV---YGLAPHDTTVASTS-G--------SDVYIWDT 302 (520)
Q Consensus 246 ~~~~l~s~s~----d-------g~v~iwd~~~~~~~~~~~~~~~v---~~~~~~~~~l~~~~-d--------~~i~iwd~ 302 (520)
++..++.|+. + ..+..||..+.+-...-..+.+- ..+..++.+++.|+ + ..+.+||+
T Consensus 45 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~ 124 (315)
T 4asc_A 45 ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDR 124 (315)
T ss_dssp TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEET
T ss_pred CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECC
Confidence 6777777774 1 12778898876543221111111 12224666666655 2 45999999
Q ss_pred CCCeeeE--EeecccccceEEEEecCCCCEEEEEeC-C-----CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC
Q 009993 303 NSGCLLT--VVNGAHVGNTKSLARSHTGDFLFTGGE-D-----GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF 374 (520)
Q Consensus 303 ~~~~~~~--~~~~~~~~~i~~l~~s~~~~~l~tg~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 374 (520)
.+.+-.. .+..+ ...- +++. .++++++.|+. + ..+.+||+.+..- ..+..+......-.++.+++
T Consensus 125 ~~~~W~~~~~~p~~-r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~ 197 (315)
T 4asc_A 125 LSFKWGESDPLPYV-VYGH-TVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW----KELAPMQTARSLFGATVHDG 197 (315)
T ss_dssp TTTEEEECCCCSSC-CBSC-EEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEE----EECCCCSSCCBSCEEEEETT
T ss_pred CCCcEeECCCCCCc-ccce-eEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeE----EECCCCCCchhceEEEEECC
Confidence 8864221 11111 1111 2222 35667777765 2 3588999877621 12222222222234455577
Q ss_pred CEEEEEeCCC-----cEEEEeCCcc
Q 009993 375 PWLVSAAGDG-----KLSLIDVRKL 394 (520)
Q Consensus 375 ~~l~s~s~dg-----~i~vwd~~~~ 394 (520)
..++.|+.++ .+.+||+.+.
T Consensus 198 ~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 198 RIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp EEEEEEEECSSSEEEEEEEEETTTT
T ss_pred EEEEEeccCCCCccceEEEEECCCC
Confidence 7777777654 4788888763
No 307
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.13 Score=47.68 Aligned_cols=247 Identities=11% Similarity=0.027 Sum_probs=120.9
Q ss_pred CEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEE--ecCCeEEEEECCCCcEEEE
Q 009993 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSG--SWDMTVRVWDRALLKCLKV 272 (520)
Q Consensus 195 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~--s~dg~v~iwd~~~~~~~~~ 272 (520)
..++.++.||.|.-.|..+|+. .+..... .............. .+..++.+ +.||.|..+|..+|.....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~-~W~~~~~-~~~p~~~~~~~~~~------~~~~~~vv~p~~dG~l~a~~~~~G~~~~~ 82 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHI-IWSIEPE-NFQPLIEIQEPSRL------ETYETLIIEPFGDGNIYYFNAHQGLQKLP 82 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEE-EEEECGG-GSCCSEECCCSCTT------TSSEEEEECCSTTTEEEEEETTTEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcE-EEEecCC-ccCCcEEecCCccc------cCCcEEEEEECCCCEEEEEECCCCcEEee
Confidence 4678888888888888877742 2222111 00011111111100 22334433 6899999999988865554
Q ss_pred ee-----eccCEEEEe---e-------CCCEEEEEc-CCeEEEEECCCCeeeEEeecccccc------eEEEEec-----
Q 009993 273 LR-----HSDWVYGLA---P-------HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGN------TKSLARS----- 325 (520)
Q Consensus 273 ~~-----~~~~v~~~~---~-------~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~------i~~l~~s----- 325 (520)
+. ...++..-. . .+..+++++ ++.+...|+++|+.+..+..+.... ..|....
T Consensus 83 ~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d 162 (339)
T 2be1_A 83 LSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQ 162 (339)
T ss_dssp EEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC------------------
T ss_pred eccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccc
Confidence 44 222233200 1 566677777 9999999999999999987432211 0111110
Q ss_pred CCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCC--EE---EEEecCCEEEEEeCCCcEEEEeCCcccccC-C
Q 009993 326 HTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP--VN---SLAFEFPWLVSAAGDGKLSLIDVRKLLRSG-R 399 (520)
Q Consensus 326 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~--v~---~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~ 399 (520)
..+..++.|..+..+.+.+ +++. ..+.. .......... +. .+.-++.+ +.++.||.|.-+|..++.... .
T Consensus 163 ~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~-~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W~~ 238 (339)
T 2be1_A 163 ECENMIVIGKTIFELGIHS-YDGA-SYNVT-YSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARWVS 238 (339)
T ss_dssp --CCEEEEEEEEEECEECC-TTSC-CCCCE-EEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEEEC
T ss_pred cCCCeEEEecceEEEEEEC-CCCC-eEEEe-cccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEEEe
Confidence 1245677777777777666 3331 11111 1111111100 00 00001233 557888888888887765443 2
Q ss_pred CCCCCceeeeeecCCCcccccCcceeeEEEEe----------cCCEEEEecCCCeEEEEeCCchHhHH
Q 009993 400 PTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI----------GADRIVCGGEEGIVRIWNFSQAFEIE 457 (520)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----------~~~~l~sg~~Dg~v~iwd~~~~~~~~ 457 (520)
......+......... . .....+.--.| ++..++.-+.||.++-+...+--.+-
T Consensus 239 ~~l~sPv~~~~dv~~~---~-~~g~~v~~~~P~~~~~~~~~~~~~v~v~~t~~G~~~Als~~~yp~~~ 302 (339)
T 2be1_A 239 PTFPGIIVGLFDVFND---L-RTNENILVPHPFNPGDHESISSNKVYLDQTSNLSWFALSSQNFPSLV 302 (339)
T ss_dssp CCCSSCEEEEEEEEEE---T-TTTEEEEEECCCCC--------CCEEEEECTTCCEEEEETTTCHHHH
T ss_pred ecCCCCeEEEEEEEEe---c-CCCCEEEecCCCcccccccccCCeEEEEECCCCcEEEecCCCCceee
Confidence 2222222211111100 0 01111222222 23344546779999999987654444
No 308
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.86 E-value=0.6 Score=48.99 Aligned_cols=223 Identities=12% Similarity=0.109 Sum_probs=130.5
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC----CCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCcc
Q 009993 142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK----PLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLP 216 (520)
Q Consensus 142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~----~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~ 216 (520)
...|.++.-..+|. |..|+.+| +..||-.+ ...+. .....|.++. .....|..|+.+| +..+|..+...
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~---~~~~~~~~~~~~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f 94 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYS---TQQHFTYGENNNTRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRY 94 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSC---EEECSCTTSTTSSCEEEEEEETTTEEEEEETTE-EEEEETTTTEE
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCc---eEEEEccCCCCCceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEE
Confidence 45799998887775 66677777 55666322 22221 1234577765 3455788888766 77888765421
Q ss_pred eeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee-----eccCEEEEee--CCCEE
Q 009993 217 HLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-----HSDWVYGLAP--HDTTV 289 (520)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-----~~~~v~~~~~--~~~~l 289 (520)
.. . .......|.++..+.+.|..++.+ -+..+|..+++...... ....|.++.. ++.+.
T Consensus 95 ---~~--~--------~~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW 160 (758)
T 3ott_A 95 ---EQ--P--------ETDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIY 160 (758)
T ss_dssp ---CC--C--------SCCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEE
T ss_pred ---EC--c--------ccCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEE
Confidence 00 0 001123577776656677777766 68889987765443211 2346777773 44444
Q ss_pred EEEcCCeEEEEECCCCeeeEEeeccc----ccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcC
Q 009993 290 ASTSGSDVYIWDTNSGCLLTVVNGAH----VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG 365 (520)
Q Consensus 290 ~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 365 (520)
.+..+.+..+|..+++......... ...|.++...+++..|..|+. +-+..+|..+... .....+ ...
T Consensus 161 -igt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~----~~~~~l--~~~ 232 (758)
T 3ott_A 161 -VGTYNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQI----KQTEAF--HNN 232 (758)
T ss_dssp -EEETTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEE----EEEEEE--EEE
T ss_pred -EEeCCCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeE----EeccCC--CCC
Confidence 4555568889988775432211111 224888888777776556654 4588888766521 111111 133
Q ss_pred CEEEEEecC-CEEEEEeCCCcEEEEeCCc
Q 009993 366 PVNSLAFEF-PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 366 ~v~~l~~~~-~~l~s~s~dg~i~vwd~~~ 393 (520)
.|.++..+. ..|..|+.+ -+.+++..+
T Consensus 233 ~i~~i~~d~~g~lWigT~~-Gl~~~~~~~ 260 (758)
T 3ott_A 233 SIKSLALDGNGDLLAGTDN-GLYVYHNDT 260 (758)
T ss_dssp EEEEEEECTTCCEEEEETT-EEEEECCTT
T ss_pred eEEEEEEcCCCCEEEEeCC-ceeEEecCC
Confidence 578887764 566666654 588888765
No 309
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.84 E-value=0.36 Score=46.20 Aligned_cols=194 Identities=11% Similarity=0.084 Sum_probs=109.3
Q ss_pred ccccEEEEEEccCCCEEE-EEeCCCeEEEEECCCC----cEEEEeC--CCCceEEEEec-CCCEEEEEeCCCcEEEEEcc
Q 009993 141 HTEAVLTVFVLASAKLLF-TSGYDSIVRMWHLEDG----FSIASSK--PLGCTIRAVAA-DKKLLVAGGTDGFIHCWRAV 212 (520)
Q Consensus 141 h~~~V~~l~~~~~~~~l~-sgs~dg~v~vwd~~~~----~~~~~~~--~~~~~v~~~~~-~~~~l~sg~~dg~i~vwd~~ 212 (520)
....+..++|++.+..|+ +-...+.|..+++... ....... .....-.++.+ .+++.++-...+.|.+.++.
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 345778999998655554 4455788999988652 1222222 12223345555 44455555566788887765
Q ss_pred cCcceeeeccCCccccceEEeccCCCCeEEEEEc--CCEEEEEec--CCeEEEEECCCCcEEEEee-eccCEEEEe--eC
Q 009993 213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSW--DMTVRVWDRALLKCLKVLR-HSDWVYGLA--PH 285 (520)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~--dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~ 285 (520)
... ....+.........|+++ +..|+.... .+.|...++........+. .-.....++ ++
T Consensus 190 g~~-------------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~ 256 (400)
T 3p5b_L 190 GVK-------------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLL 256 (400)
T ss_dssp TCS-------------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETT
T ss_pred CCc-------------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeC
Confidence 432 111122233456788885 356665542 3678888886543333222 223455555 55
Q ss_pred CCEEEEEc--CCeEEEEECCCCeeeEEeec-ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993 286 DTTVASTS--GSDVYIWDTNSGCLLTVVNG-AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND 348 (520)
Q Consensus 286 ~~~l~~~~--d~~i~iwd~~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~ 348 (520)
+..|+.+. .+.|..+|+........... ........+++. .+.++++-...+.|..+|..++
T Consensus 257 ~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 257 SGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp TTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred CCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence 66666555 68899999875443333221 123445677763 3445556666788888887666
No 310
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.79 E-value=0.42 Score=46.22 Aligned_cols=143 Identities=12% Similarity=0.016 Sum_probs=78.9
Q ss_pred EEEecC--CCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCC-----e
Q 009993 188 RAVAAD--KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM-----T 258 (520)
Q Consensus 188 ~~~~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg-----~ 258 (520)
.++.++ +..|+.+...+.|+.+|..++. ...+.........+++ +++ |+.+...+ .
T Consensus 144 vavd~~s~~g~Lyv~D~~~~I~~id~~~g~--------------v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~g 208 (433)
T 4hw6_A 144 MMFDPNSNYDDLYWVGQRDAFRHVDFVNQY--------------VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTG 208 (433)
T ss_dssp EEECTTTTTCEEEEECBTSCEEEEETTTTE--------------EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEE
T ss_pred EEEccccCCCEEEEEeCCCCEEEEECCCCE--------------EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccce
Confidence 345553 4555555554788888876552 2233334456788888 556 55444321 2
Q ss_pred EEEEECCCCc----EEEEeeeccCEEEEee-CCCEEEEEc-CCeEEEEECCCCeeeEEe-ecccccceEEEEecCCCCEE
Q 009993 259 VRVWDRALLK----CLKVLRHSDWVYGLAP-HDTTVASTS-GSDVYIWDTNSGCLLTVV-NGAHVGNTKSLARSHTGDFL 331 (520)
Q Consensus 259 v~iwd~~~~~----~~~~~~~~~~v~~~~~-~~~~l~~~~-d~~i~iwd~~~~~~~~~~-~~~~~~~i~~l~~s~~~~~l 331 (520)
+...+...+. .+..+.++.. .++.+ ++.++++.. ++.|+.+|..++.....+ ..+.......++|+|+++.|
T Consensus 209 v~~~~~~~~~~~~~~~~~~~~P~g-iavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~L 287 (433)
T 4hw6_A 209 IYLFTRASGFTERLSLCNARGAKT-CAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWA 287 (433)
T ss_dssp EEEECGGGTTCCEEEEEECSSBCC-CEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEE
T ss_pred EEEEECCCCeeccccccccCCCCE-EEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEE
Confidence 3333332221 1111112222 23446 566555555 688999999877652222 22222334579999999955
Q ss_pred E-EEeCCCeEEEEEcc
Q 009993 332 F-TGGEDGAIHMYEII 346 (520)
Q Consensus 332 ~-tg~~dg~i~iwd~~ 346 (520)
+ +-...+.|+.+++.
T Consensus 288 Yvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 288 YIIYNGKHCIYRVDYN 303 (433)
T ss_dssp EEEETTTTEEEEEEBC
T ss_pred EEEeCCCCEEEEEeCC
Confidence 5 44556889998875
No 311
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.70 E-value=0.37 Score=44.36 Aligned_cols=217 Identities=12% Similarity=-0.048 Sum_probs=120.2
Q ss_pred CeEEEEECCCCcEEEEeCCCC-ceEEEEecCCCEE-EEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeE
Q 009993 164 SIVRMWHLEDGFSIASSKPLG-CTIRAVAADKKLL-VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPIT 241 (520)
Q Consensus 164 g~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 241 (520)
..|+..|+.+.+......... ..-.++.+.+..| ++-..++.|..+++.+... . ......+........
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~--------~-~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG--------V-SSYDTVISRDIQAPD 80 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------CEEEECSSCSCCC
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC--------C-cccEEEEeCCCCCcC
Confidence 458899998776554443322 2223445555544 4555568888888764100 0 001111212223456
Q ss_pred EEEEc--CCEEE-EEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc--C-CeEEEEECCCCeeeEEee
Q 009993 242 SLALD--LTRIY-SGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS--G-SDVYIWDTNSGCLLTVVN 312 (520)
Q Consensus 242 ~l~~~--~~~l~-s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~--d-~~i~iwd~~~~~~~~~~~ 312 (520)
.++++ ++.|+ +-...+.|.+.|.........+. .......++ |.+..++.+. . +.|..+++.... ...+.
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~ 159 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLV 159 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEE
Confidence 77773 45554 44567899999987554433333 223445555 5555554444 3 688888886433 33332
Q ss_pred cccccceEEEEecCCCCEEEEEe-CCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEE-EeCCCcEEEEe
Q 009993 313 GAHVGNTKSLARSHTGDFLFTGG-EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVS-AAGDGKLSLID 390 (520)
Q Consensus 313 ~~~~~~i~~l~~s~~~~~l~tg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s-~s~dg~i~vwd 390 (520)
.........++++|++..|+.+. ..+.|..+|+..... ..+............++++...|+. -...+.|..++
T Consensus 160 ~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~----~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~ 235 (316)
T 1ijq_A 160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR----KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSAN 235 (316)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce----EEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEe
Confidence 22345678999999877666554 567899999875421 2222211223446777776655544 44567888888
Q ss_pred CCcc
Q 009993 391 VRKL 394 (520)
Q Consensus 391 ~~~~ 394 (520)
..++
T Consensus 236 ~~~g 239 (316)
T 1ijq_A 236 RLTG 239 (316)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 7553
No 312
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.67 E-value=0.82 Score=47.92 Aligned_cols=228 Identities=13% Similarity=0.115 Sum_probs=128.7
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeec
Q 009993 142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDI 221 (520)
Q Consensus 142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 221 (520)
...|.++....+| .|..|+.+| +..||..+.............|.++..+...|..|+.+ -+..+|..++....+..
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~~~~ 138 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRKLTSFDT 138 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCCEEEECH
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCeEEEecc
Confidence 3568888777665 566677665 78999877643321111223455555344567777766 57778876543211100
Q ss_pred cCCccccceEEeccCCCCeEEEEEc-CCEEEEEecCCeEEEEECCCCcEEEEe-e-----eccCEEEEee--CCCEEEEE
Q 009993 222 SGSEKQNTQFRLWEHEGPITSLALD-LTRIYSGSWDMTVRVWDRALLKCLKVL-R-----HSDWVYGLAP--HDTTVAST 292 (520)
Q Consensus 222 ~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~-~-----~~~~v~~~~~--~~~~l~~~ 292 (520)
. . .......|.++..+ .+.|..|+.+ -+..+|..+++..... . ....|.++.. ++..|..+
T Consensus 139 ~-------~--~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWig 208 (758)
T 3ott_A 139 R-------R--NGLPNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIG 208 (758)
T ss_dssp H-------H--HCCSCSCEEEEEECTTCCEEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEE
T ss_pred C-------C--CCcCCCeEEEEEEcCCCCEEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEE
Confidence 0 0 00123468888874 4556666654 4778887766543221 1 1224777764 35655666
Q ss_pred cCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeee-----cCCcCCE
Q 009993 293 SGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW-----IPHTGPV 367 (520)
Q Consensus 293 ~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~h~~~v 367 (520)
.++.+..+|..+++...... .....|.++...++|.+.+ |+.+ -+.+++..+... ...... .-....|
T Consensus 209 t~~Gl~~~~~~~~~~~~~~~-l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~----~~~~~~~~~~~~l~~~~i 281 (758)
T 3ott_A 209 TEGYLFQYFPSTGQIKQTEA-FHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPL----QHIIHDSRNIQSLTNNII 281 (758)
T ss_dssp EEEEEEEEETTTTEEEEEEE-EEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCC----EEECCCTTCTTSCSCSCE
T ss_pred ECCCCeEEcCCCCeEEeccC-CCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcE----EEEEcCCCCcCcCCcCeE
Confidence 65678899988775432211 1344688888887777554 4444 477888765421 111100 0123468
Q ss_pred EEEEecC-CEEEEEeCCCcEEEEe
Q 009993 368 NSLAFEF-PWLVSAAGDGKLSLID 390 (520)
Q Consensus 368 ~~l~~~~-~~l~s~s~dg~i~vwd 390 (520)
.++..+. ..|-.|+..| +.+..
T Consensus 282 ~~i~~D~~g~lWiGT~~G-l~~~~ 304 (758)
T 3ott_A 282 WNIFADQEHNIWLGTDYG-ISLSR 304 (758)
T ss_dssp EEEEECTTCCEEEEESSS-EEEEC
T ss_pred EEEEEcCCCCEEEEeCCc-ccccc
Confidence 8888875 4566677666 55543
No 313
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=96.61 E-value=0.52 Score=44.88 Aligned_cols=261 Identities=14% Similarity=0.068 Sum_probs=138.7
Q ss_pred eEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEecc-CCCCeEEEEE--cCCEEEEEecCCeEEEE
Q 009993 186 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE-HEGPITSLAL--DLTRIYSGSWDMTVRVW 262 (520)
Q Consensus 186 ~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~--~~~~l~s~s~dg~v~iw 262 (520)
.+..++......+.-..||.|..|-.......-. ...........+.. ....+..+++ .....+.-..||.|..|
T Consensus 54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~--g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~w 131 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGI--GGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSW 131 (389)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSS--SSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCC--CCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence 4556665566667778899999996543211000 00000001111111 1223443444 44667777889999999
Q ss_pred ECCCC-----------cEEEEee--eccCEEEEeeCCCE-EEEEcCCeEEEEECCCC-e----------eeEEeeccccc
Q 009993 263 DRALL-----------KCLKVLR--HSDWVYGLAPHDTT-VASTSGSDVYIWDTNSG-C----------LLTVVNGAHVG 317 (520)
Q Consensus 263 d~~~~-----------~~~~~~~--~~~~v~~~~~~~~~-l~~~~d~~i~iwd~~~~-~----------~~~~~~~~~~~ 317 (520)
-.... .....+. ....|..++..... ++...+|.|+.|-.... + ....+......
T Consensus 132 G~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~ 211 (389)
T 3kci_A 132 GEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGH 211 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTS
T ss_pred eCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCC
Confidence 64321 0111111 22367788855544 44455999999975431 1 11122211233
Q ss_pred ceEEEEecCCCCEEEEEeCCCeEEEEEcccCccc------cceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeC
Q 009993 318 NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE------ANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDV 391 (520)
Q Consensus 318 ~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~------~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~ 391 (520)
.|..++........+.-..||.|+.|-....... ....+...-......|..|+....+.+.-..||.|+.|-.
T Consensus 212 ~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~ 291 (389)
T 3kci_A 212 RVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGK 291 (389)
T ss_dssp CEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred eEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeC
Confidence 5666665443356666678999999975432111 0001111111122358888887787788889999999988
Q ss_pred CcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHh
Q 009993 392 RKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFE 455 (520)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~ 455 (520)
....+.......... .+..+..-....|..++......+.-..||.|+.|-....-+
T Consensus 292 n~~GqLG~g~~~~~~-------~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~Gq 348 (389)
T 3kci_A 292 GDYHRLGHGSDDHVR-------RPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQ 348 (389)
T ss_dssp CGGGTTCSSSCCCEE-------EEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTST
T ss_pred CCCCCCCCCCCcccc-------CCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCc
Confidence 764433322111110 011111111235667777777667778899999998765443
No 314
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.57 E-value=0.38 Score=44.22 Aligned_cols=142 Identities=10% Similarity=0.024 Sum_probs=73.2
Q ss_pred cCCEEEEEec----CC-------eEEEEECCCCcEEEEeeec---cCEEEEeeCCCEEEEEc-C-------CeEEEEECC
Q 009993 246 DLTRIYSGSW----DM-------TVRVWDRALLKCLKVLRHS---DWVYGLAPHDTTVASTS-G-------SDVYIWDTN 303 (520)
Q Consensus 246 ~~~~l~s~s~----dg-------~v~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~l~~~~-d-------~~i~iwd~~ 303 (520)
++..++.|+. ++ .+..||..+.+-...-..+ ..-.....++.+++.|+ + ..+.+||+.
T Consensus 56 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~ 135 (318)
T 2woz_A 56 QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPV 135 (318)
T ss_dssp SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETT
T ss_pred CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCC
Confidence 6677777773 12 2778888776543322211 11122235666666665 3 348899998
Q ss_pred CCeeeEE--eecccccceEEEEecCCCCEEEEEeC------CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCC
Q 009993 304 SGCLLTV--VNGAHVGNTKSLARSHTGDFLFTGGE------DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP 375 (520)
Q Consensus 304 ~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~tg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 375 (520)
+.+-... +...... - +++. .++.+++.|+. -..+.+||+.+..- ..+..+........++.+++.
T Consensus 136 ~~~W~~~~~~p~~r~~-~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~ 208 (318)
T 2woz_A 136 AAKWSEVKNLPIKVYG-H-NVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW----KDLAPMKTPRSMFGVAIHKGK 208 (318)
T ss_dssp TTEEEEECCCSSCEES-C-EEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEE----EEECCCSSCCBSCEEEEETTE
T ss_pred CCCEeECCCCCCcccc-c-EEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEE----EECCCCCCCcccceEEEECCE
Confidence 7653322 1111111 1 1222 35666676664 23588999877631 122222222222344555677
Q ss_pred EEEEEeCC-----CcEEEEeCCcc
Q 009993 376 WLVSAAGD-----GKLSLIDVRKL 394 (520)
Q Consensus 376 ~l~s~s~d-----g~i~vwd~~~~ 394 (520)
.++.|+.+ ..+.+||+.+.
T Consensus 209 iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 209 IVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp EEEEEEEETTEEEEEEEEEETTTC
T ss_pred EEEEcCcCCCCccceEEEEECCCC
Confidence 77777653 34678887763
No 315
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.03 Score=51.94 Aligned_cols=184 Identities=13% Similarity=0.060 Sum_probs=104.4
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeCCC-CceEEEEe----cCCCEEEEE--eCCCcEEEEEcccCcceeeeccCCcc
Q 009993 154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPL-GCTIRAVA----ADKKLLVAG--GTDGFIHCWRAVEVLPHLFDISGSEK 226 (520)
Q Consensus 154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~----~~~~~l~sg--~~dg~i~vwd~~~~~~~~~~~~~~~~ 226 (520)
+.+++.++.||.|.-.|..+|+.+.++... ..+..... +.+..++.+ +.||.|..++..+|... +.....
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~-~~~~~~-- 86 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK-LPLSIR-- 86 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE-EEEEHH--
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE-eeeccc--
Confidence 347889999999999999999999888654 12222222 112244444 58999999998776321 111000
Q ss_pred ccceEEeccCCCCeEE---EEE-------cCCEEEEEecCCeEEEEECCCCcEEEEeeeccC--------EEEEe-----
Q 009993 227 QNTQFRLWEHEGPITS---LAL-------DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDW--------VYGLA----- 283 (520)
Q Consensus 227 ~~~~~~~~~h~~~v~~---l~~-------~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~--------v~~~~----- 283 (520)
.+ -...++.. ..+ .++.+++|+.+|.+...|+.+|+.+..+....+ ..|..
T Consensus 87 -----~l-v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~ 160 (339)
T 2be1_A 87 -----QL-VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIK 160 (339)
T ss_dssp -----HH-HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC----------------
T ss_pred -----cc-eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccc
Confidence 00 01122221 001 567899999999999999999999999873221 11111
Q ss_pred --eCCCEEEEEc-CCeEEEEECCCCeeeEEeecc-ccc-ceE-----EEEecCCCCEEEEEeCCCeEEEEEcccCc
Q 009993 284 --PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGA-HVG-NTK-----SLARSHTGDFLFTGGEDGAIHMYEIINDC 349 (520)
Q Consensus 284 --~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~-~~~-~i~-----~l~~s~~~~~l~tg~~dg~i~iwd~~~~~ 349 (520)
..+..++.+. +..+.+.+ ++|+ +..+... ... .+. .-..+.++.+ +.++.||.|.-+|..++.
T Consensus 161 ~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~ 233 (339)
T 2be1_A 161 LQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRI 233 (339)
T ss_dssp ----CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCC
T ss_pred cccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCc
Confidence 1234566555 66777766 4454 2222100 000 000 0001123555 457889999999988773
No 316
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.54 E-value=0.48 Score=43.78 Aligned_cols=181 Identities=15% Similarity=0.196 Sum_probs=107.0
Q ss_pred cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE------cCCE--EEEEe--c--CCeE
Q 009993 192 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL------DLTR--IYSGS--W--DMTV 259 (520)
Q Consensus 192 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~------~~~~--l~s~s--~--dg~v 259 (520)
|....++.....+-+.+||+ ++. .+..+.. +.++.+.. .+.. ++.++ . +++|
T Consensus 38 p~~s~ii~t~k~~gL~Vydl-~G~-------------~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l 101 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSL-DGK-------------MLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTI 101 (355)
T ss_dssp GGGCEEEEEETTTEEEEEET-TSC-------------EEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEE
T ss_pred CCccEEEEEcCCCCEEEEcC-CCc-------------EEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeE
Confidence 34556666677788999999 442 2222321 44555444 2322 33333 3 5789
Q ss_pred EEEEC--CCCcEEEEeee---c-----cCEE--EE--ee-CCC-EEEEEc-CCeEEEEECC-------CCeeeEEeeccc
Q 009993 260 RVWDR--ALLKCLKVLRH---S-----DWVY--GL--AP-HDT-TVASTS-GSDVYIWDTN-------SGCLLTVVNGAH 315 (520)
Q Consensus 260 ~iwd~--~~~~~~~~~~~---~-----~~v~--~~--~~-~~~-~l~~~~-d~~i~iwd~~-------~~~~~~~~~~~~ 315 (520)
.+|++ .++. +..+.. + ..+. |+ .+ .+. ++++.. +|.+..|++. +.+.++.+. -
T Consensus 102 ~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~--l 178 (355)
T 3amr_A 102 EIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK--M 178 (355)
T ss_dssp EEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE--C
T ss_pred EEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec--C
Confidence 99976 3443 444421 1 2233 33 23 344 455555 8999998882 345677775 3
Q ss_pred ccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec-CC-cCCEEEEEec--C---CEEEEEe-CCCcEE
Q 009993 316 VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI-PH-TGPVNSLAFE--F---PWLVSAA-GDGKLS 387 (520)
Q Consensus 316 ~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~-~h-~~~v~~l~~~--~---~~l~s~s-~dg~i~ 387 (520)
.+.+..+...+....|+.+-++.-|..|+.+.... .....+..+. ++ ...+..|+.. + .+|++++ .+++..
T Consensus 179 gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~-~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~ 257 (355)
T 3amr_A 179 NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGG-SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYA 257 (355)
T ss_dssp SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSC-SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEE
T ss_pred CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCC-CCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEE
Confidence 56788999999999999999997666666442210 1112333331 22 2368888872 2 3677666 577999
Q ss_pred EEeCC
Q 009993 388 LIDVR 392 (520)
Q Consensus 388 vwd~~ 392 (520)
+||..
T Consensus 258 Vydr~ 262 (355)
T 3amr_A 258 IYDRQ 262 (355)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 99996
No 317
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.53 E-value=0.43 Score=43.73 Aligned_cols=200 Identities=10% Similarity=0.042 Sum_probs=105.1
Q ss_pred EEEEEccCCCEEEEEe-CCCeEEEEECCCCcEEEE-eCC----CCc--eEE--EE---ecCCCEEEEEe-----------
Q 009993 146 LTVFVLASAKLLFTSG-YDSIVRMWHLEDGFSIAS-SKP----LGC--TIR--AV---AADKKLLVAGG----------- 201 (520)
Q Consensus 146 ~~l~~~~~~~~l~sgs-~dg~v~vwd~~~~~~~~~-~~~----~~~--~v~--~~---~~~~~~l~sg~----------- 201 (520)
-+.+|++....++.++ ..++|..|+...+..... +.+ ... .+. .+ .+++.++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence 3678887555566555 799999999976644333 322 111 122 33 35555666433
Q ss_pred --CCCcEEEEEcc---cCccee-eeccCCccccceEEecc-CCCCeEEEEE--cCCEEEEEecC-CeEEEEECCCCcEEE
Q 009993 202 --TDGFIHCWRAV---EVLPHL-FDISGSEKQNTQFRLWE-HEGPITSLAL--DLTRIYSGSWD-MTVRVWDRALLKCLK 271 (520)
Q Consensus 202 --~dg~i~vwd~~---~~~~~~-~~~~~~~~~~~~~~~~~-h~~~v~~l~~--~~~~l~s~s~d-g~v~iwd~~~~~~~~ 271 (520)
.+..|..+|+. ++.... .++..... ......+ -......++. +|+..++++.. +.|...+........
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~--~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~ 173 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQD--EFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVST 173 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCSEEEESHHHHH--HHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEE
T ss_pred cCCCCEEEEEcCCcCCCCCEEEEecCccccc--cccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEee
Confidence 25778889987 553211 11100000 0000001 1124677888 67888888888 887777765442221
Q ss_pred Eeeec------cCEEEEe--eCCCEEEEEc-CCeEEEEECCCCee--eEEeecc---cccceEEE-EecCCCCE-EEEEe
Q 009993 272 VLRHS------DWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCL--LTVVNGA---HVGNTKSL-ARSHTGDF-LFTGG 335 (520)
Q Consensus 272 ~~~~~------~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~--~~~~~~~---~~~~i~~l-~~s~~~~~-l~tg~ 335 (520)
..... ...+.+. |+++.|++.. ++.+..+|+.+... +..-..+ .......+ ..-.+|+. +++..
T Consensus 174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~ 253 (334)
T 2p9w_A 174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGAR 253 (334)
T ss_dssp EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEE
T ss_pred eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcC
Confidence 11111 1123444 8898888887 89999999885322 1110001 11123333 22236766 55555
Q ss_pred CCCeEEEEEccc
Q 009993 336 EDGAIHMYEIIN 347 (520)
Q Consensus 336 ~dg~i~iwd~~~ 347 (520)
..+.+.+.+...
T Consensus 254 ~~~~~~l~S~Dg 265 (334)
T 2p9w_A 254 APYAISFRSWDN 265 (334)
T ss_dssp TTEEEEEECSST
T ss_pred CCCEEEEECCCC
Confidence 566665555444
No 318
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.51 E-value=1 Score=47.14 Aligned_cols=193 Identities=11% Similarity=0.076 Sum_probs=107.9
Q ss_pred cccEEEEEEccCCC-EEEEEeCCCeEEEEECCCC----cEEEEeC--CCCceEEEEecCCC-EEEEEeCCCcEEEEEccc
Q 009993 142 TEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDG----FSIASSK--PLGCTIRAVAADKK-LLVAGGTDGFIHCWRAVE 213 (520)
Q Consensus 142 ~~~V~~l~~~~~~~-~l~sgs~dg~v~vwd~~~~----~~~~~~~--~~~~~v~~~~~~~~-~l~sg~~dg~i~vwd~~~ 213 (520)
...+.+|+|++.+. ++++-...+.|+.+++... .....+. .....-+++.+.+. ++++-...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 45677899988544 4555556788988888652 1122222 12233456665554 444555668888888754
Q ss_pred CcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEec--CCeEEEEECCCCcEEEEee-eccCEEEEe--eCC
Q 009993 214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSW--DMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHD 286 (520)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~--dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~ 286 (520)
.. ....+.........|++++ .+|+.... .+.|...++........+. .-.....|+ +.+
T Consensus 503 ~~-------------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~ 569 (791)
T 3m0c_C 503 VK-------------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLS 569 (791)
T ss_dssp SS-------------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTT
T ss_pred Ce-------------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCC
Confidence 32 1111222334578888853 56665543 2678888886544433333 224555665 455
Q ss_pred CEEEEEc--CCeEEEEECCCCeeeEEeec-ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993 287 TTVASTS--GSDVYIWDTNSGCLLTVVNG-AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND 348 (520)
Q Consensus 287 ~~l~~~~--d~~i~iwd~~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~ 348 (520)
..|+.+. .+.|..+|+........+.. +......+|++.. +.++++-...+.|...|..++
T Consensus 570 ~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 570 GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCC
Confidence 5555554 57899999865544333321 1223445666642 334445555677888876666
No 319
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.33 E-value=0.012 Score=61.13 Aligned_cols=195 Identities=13% Similarity=0.026 Sum_probs=103.2
Q ss_pred CCeEEEEEc--CCEEEEEe-cCCeEEEEECCC----CcEEEEee-eccCEEEEe--eC-CCEEEEEc-CCeEEEEECCCC
Q 009993 238 GPITSLALD--LTRIYSGS-WDMTVRVWDRAL----LKCLKVLR-HSDWVYGLA--PH-DTTVASTS-GSDVYIWDTNSG 305 (520)
Q Consensus 238 ~~v~~l~~~--~~~l~s~s-~dg~v~iwd~~~----~~~~~~~~-~~~~v~~~~--~~-~~~l~~~~-d~~i~iwd~~~~ 305 (520)
..+..++|+ .+.|+.+. ..+.|+.+++.+ ......+. .......++ +. ++++++-. .+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 345567774 45665554 457899998875 22222221 111122333 33 44444444 688999998765
Q ss_pred eeeEEeecccccceEEEEecCCCCEEEEEeC--CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--C-EEEEE
Q 009993 306 CLLTVVNGAHVGNTKSLARSHTGDFLFTGGE--DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P-WLVSA 380 (520)
Q Consensus 306 ~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~-~l~s~ 380 (520)
.....+. ........++++|.+.+|+.... .+.|..+++.... ........-...+.|++++ . ++++-
T Consensus 486 ~~~~l~~-~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~------~~~l~~~~l~~PnGlavd~~~~~LY~aD 558 (699)
T 1n7d_A 486 KRKTLFR-EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD------IYSLVTENIQWPNGITLDLLSGRLYWVD 558 (699)
T ss_dssp CEEEECC-CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC------CCEESCSSCSSCCCEEECTTTCCEEEEE
T ss_pred ceEEEEe-CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC------eeEEEeCCCCCccEEEEeccCCEEEEEe
Confidence 4433332 22345678899997665554433 2678877775441 1111112233567888975 3 44555
Q ss_pred eCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC-EEEEecCCCeEEEEeCCchHhH
Q 009993 381 AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEI 456 (520)
Q Consensus 381 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~~ 456 (520)
+..+.|.++++...... .+.. .... ..+. ..+.++++ ++++....+.|..++..++..+
T Consensus 559 ~~~~~I~~~d~dG~~~~----------~~~~--~~~~--~~~P---~glavd~~~lywtd~~~~~V~~~d~~~G~~~ 618 (699)
T 1n7d_A 559 SKLHSISSIDVNGGNRK----------TILE--DEKR--LAHP---FSLAVFEDKVFWTDIINEAIFSANRLTGSDV 618 (699)
T ss_dssp TTTTEEEEECSSSSCCE----------EECC--CSSS--CSSC---CCCEEETTEEEEECSTTTCEEEEETTTEEEE
T ss_pred cCCCeEEEEccCCCceE----------EEEe--cCCc--CCCc---eEeEEECCEEEEEeCCCCeEEEEEccCCCce
Confidence 56778999998642110 0000 0000 0111 12233344 5666667789999998766544
No 320
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.33 E-value=0.25 Score=46.30 Aligned_cols=93 Identities=9% Similarity=-0.010 Sum_probs=45.8
Q ss_pred cCCCEEEEEeCC-CcEEEEEcccCcceeeeccCCccccceEEec-cCCCCeEEEEEcCCEEEEEec-C---------CeE
Q 009993 192 ADKKLLVAGGTD-GFIHCWRAVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLALDLTRIYSGSW-D---------MTV 259 (520)
Q Consensus 192 ~~~~~l~sg~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~l~s~s~-d---------g~v 259 (520)
.++.+++.|+.+ ..+.++|..+.... ......+. .....-....+++..++.|+. + ..+
T Consensus 18 ~~~~iyv~GG~~~~~~~~~d~~~~~~~---------W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v 88 (357)
T 2uvk_A 18 DNDTVYIGLGSAGTAWYKLDTQAKDKK---------WTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDV 88 (357)
T ss_dssp ETTEEEEECGGGTTCEEEEETTSSSCC---------EEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCE
T ss_pred ECCEEEEEeCcCCCeEEEEccccCCCC---------eeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccE
Confidence 356666666544 45777777531110 11111111 111222233446667777765 2 468
Q ss_pred EEEECCCCcEEEEeeec----cCEEEEeeCCCEEEEEc
Q 009993 260 RVWDRALLKCLKVLRHS----DWVYGLAPHDTTVASTS 293 (520)
Q Consensus 260 ~iwd~~~~~~~~~~~~~----~~v~~~~~~~~~l~~~~ 293 (520)
.+||..+.+-...-... ..-.++..++++++.|+
T Consensus 89 ~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG 126 (357)
T 2uvk_A 89 HKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGG 126 (357)
T ss_dssp EEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEEC
T ss_pred EEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeC
Confidence 89998876533322211 11223336777777776
No 321
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.24 E-value=0.0019 Score=65.97 Aligned_cols=38 Identities=13% Similarity=0.280 Sum_probs=29.5
Q ss_pred ccccccCCCHHHHHHHccCCC-hhhhHHHhhhhhhHHHh
Q 009993 60 HRSTITDLPPALISEILNCLD-PKELGIVSCVSPILHRL 97 (520)
Q Consensus 60 ~~~~~~~LP~el~~~i~~~L~-~~~l~~~s~v~~~~~~~ 97 (520)
+.|.+..||+|++.+||+||+ .+++.+++.|||+|+.+
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 457799999999999999999 99999999999999998
No 322
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.08 E-value=0.33 Score=45.47 Aligned_cols=226 Identities=12% Similarity=0.013 Sum_probs=109.3
Q ss_pred CCCEEEEEeCC-CeEEEEECCC--Cc--EEEEeC-CCCceEEEEecCCCEEEEEeC-C---------CcEEEEEcccCcc
Q 009993 153 SAKLLFTSGYD-SIVRMWHLED--GF--SIASSK-PLGCTIRAVAADKKLLVAGGT-D---------GFIHCWRAVEVLP 216 (520)
Q Consensus 153 ~~~~l~sgs~d-g~v~vwd~~~--~~--~~~~~~-~~~~~v~~~~~~~~~l~sg~~-d---------g~i~vwd~~~~~~ 216 (520)
++.+++.|+.+ ..+.++|..+ .+ .+..+. .......+...++.+++.|+. + ..+.+||..+..-
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W 98 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW 98 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence 56666777643 4688889864 22 222222 111111222346777777765 2 4577888766532
Q ss_pred eeeeccCCccccceEEec-cCCCCeEEEEEcCCEEEEEecC---------------------------------------
Q 009993 217 HLFDISGSEKQNTQFRLW-EHEGPITSLALDLTRIYSGSWD--------------------------------------- 256 (520)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~l~s~s~d--------------------------------------- 256 (520)
... ..+. .....-.++..++..++.|+.+
T Consensus 99 ~~~-----------~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (357)
T 2uvk_A 99 VKL-----------MSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFN 167 (357)
T ss_dssp EEC-----------SCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCC
T ss_pred EEC-----------CCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCc
Confidence 111 0111 1112223344577777777754
Q ss_pred CeEEEEECCCCcEEEEee--eccC--EEEEeeCCCEEEEEc-C------CeEEEEEC--CCCeeeEEeec-ccc-cceEE
Q 009993 257 MTVRVWDRALLKCLKVLR--HSDW--VYGLAPHDTTVASTS-G------SDVYIWDT--NSGCLLTVVNG-AHV-GNTKS 321 (520)
Q Consensus 257 g~v~iwd~~~~~~~~~~~--~~~~--v~~~~~~~~~l~~~~-d------~~i~iwd~--~~~~~~~~~~~-~~~-~~i~~ 321 (520)
..+.+||..+.+-...-. .... ...+..++++++.|+ + ..+.+||+ .+.+- ..+.. ... .....
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W-~~~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKW-NKLAPVSSPDGVAGG 246 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEE-EECCCSSTTTCCBSC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcE-EecCCCCCCcccccc
Confidence 578999988765433322 1111 222335666666654 2 35777887 43321 11111 011 11111
Q ss_pred EEecCCCCEEEEEeCC----------------------CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEE
Q 009993 322 LARSHTGDFLFTGGED----------------------GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVS 379 (520)
Q Consensus 322 l~~s~~~~~l~tg~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s 379 (520)
.+...++.+++.|+.+ ..+.+||+.+..- ..+..+......-.++.+++..++.
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~i~v~ 322 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKW----DKSGELSQGRAYGVSLPWNNSLLII 322 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---C----EEEEECSSCCBSSEEEEETTEEEEE
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCce----eeCCCCCCCcccceeEEeCCEEEEE
Confidence 1122256677777632 2477888876531 2233332222233445567788888
Q ss_pred EeCCC------cEEEEeCCcc
Q 009993 380 AAGDG------KLSLIDVRKL 394 (520)
Q Consensus 380 ~s~dg------~i~vwd~~~~ 394 (520)
|+.++ .|.++++++.
T Consensus 323 GG~~~~~~~~~~v~~l~~~~~ 343 (357)
T 2uvk_A 323 GGETAGGKAVTDSVLITVKDN 343 (357)
T ss_dssp EEECGGGCEEEEEEEEEC-CC
T ss_pred eeeCCCCCEeeeEEEEEEcCc
Confidence 88653 3445566653
No 323
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.02 E-value=0.25 Score=46.79 Aligned_cols=143 Identities=13% Similarity=0.136 Sum_probs=91.2
Q ss_pred cCCEEEEEecCCeEEEEECCCCcEEEEeeec-----cCEEE--EeeCCCEEEEEcCCeEEEEECCCCe------------
Q 009993 246 DLTRIYSGSWDMTVRVWDRALLKCLKVLRHS-----DWVYG--LAPHDTTVASTSGSDVYIWDTNSGC------------ 306 (520)
Q Consensus 246 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-----~~v~~--~~~~~~~l~~~~d~~i~iwd~~~~~------------ 306 (520)
++..++.+- ++.||.-++.....-+.+..+ ..|.. ++++|++++..++..|.|..+..+.
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~ 109 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAF 109 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccccc
Confidence 666666655 478888887754444444422 13433 4499999999999999999987331
Q ss_pred eeEEeecc-----cccceEEEEecCC---CCEEEEEeCCCeEEEEEcccCccccc-ee---eeeeecCCcCCEEEEEecC
Q 009993 307 LLTVVNGA-----HVGNTKSLARSHT---GDFLFTGGEDGAIHMYEIINDCTEAN-VL---LVATWIPHTGPVNSLAFEF 374 (520)
Q Consensus 307 ~~~~~~~~-----~~~~i~~l~~s~~---~~~l~tg~~dg~i~iwd~~~~~~~~~-~~---~~~~~~~h~~~v~~l~~~~ 374 (520)
..+.+.-+ ...+|..+.|+|- +..|++-..|+.|++||+........ .. ...........|.+++|.+
T Consensus 110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~ 189 (452)
T 3pbp_A 110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK 189 (452)
T ss_dssp EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT
T ss_pred ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC
Confidence 11223221 2467999999994 56899999999999999987422111 00 0011122335788999965
Q ss_pred --C--EEEEEeCCCcEEEE
Q 009993 375 --P--WLVSAAGDGKLSLI 389 (520)
Q Consensus 375 --~--~l~s~s~dg~i~vw 389 (520)
- |+++.+.+|.|+-.
T Consensus 190 ~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 190 DGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TSSCEEEEECTTSCEEEEE
T ss_pred CCcEEEEEecCCCCCEEEE
Confidence 2 44445577888654
No 324
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=95.98 E-value=0.93 Score=41.50 Aligned_cols=160 Identities=13% Similarity=0.067 Sum_probs=99.4
Q ss_pred eccCCCCeEEEEEcC--CEEEEEe-cCCeEEEEECCCCcEEEE-eee-----c--cCEEEEe-----eCCCEEEEEc---
Q 009993 233 LWEHEGPITSLALDL--TRIYSGS-WDMTVRVWDRALLKCLKV-LRH-----S--DWVYGLA-----PHDTTVASTS--- 293 (520)
Q Consensus 233 ~~~h~~~v~~l~~~~--~~l~s~s-~dg~v~iwd~~~~~~~~~-~~~-----~--~~v~~~~-----~~~~~l~~~~--- 293 (520)
+......-.++.|+. ..++.++ ..++|..||...+..... +.. . ..+..+. ++++++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 334445556778853 6666666 789999999976644333 211 0 1234444 4556666433
Q ss_pred -----------CCeEEEEECC---CCeeeEEeecc-c-----------ccceEEEEecCCCCEEEEEeCC-CeEEEEEcc
Q 009993 294 -----------GSDVYIWDTN---SGCLLTVVNGA-H-----------VGNTKSLARSHTGDFLFTGGED-GAIHMYEII 346 (520)
Q Consensus 294 -----------d~~i~iwd~~---~~~~~~~~~~~-~-----------~~~i~~l~~s~~~~~l~tg~~d-g~i~iwd~~ 346 (520)
+..|..||+. +++.+...... . ......++..++|+..++++.. +.|...+..
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 4669999999 78776655421 1 1248899999999999999888 887777665
Q ss_pred cCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993 347 NDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 347 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 393 (520)
.... ................+.|+++| ..|++....|.|..+|+.+
T Consensus 168 G~~~-~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 168 GKTV-STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp SCCE-EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCEE-eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 4311 00000000011122367889975 5777776699999999884
No 325
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=95.81 E-value=1.9 Score=43.81 Aligned_cols=191 Identities=12% Similarity=-0.028 Sum_probs=112.9
Q ss_pred ccEEEEEEccCCCEEE-EEeCCCeEEEEECCCCcEEEEeCC--CCceEEEEecCCC-EEEEEeCCCcEEEEEcccCccee
Q 009993 143 EAVLTVFVLASAKLLF-TSGYDSIVRMWHLEDGFSIASSKP--LGCTIRAVAADKK-LLVAGGTDGFIHCWRAVEVLPHL 218 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~-sgs~dg~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~ 218 (520)
..+..++|++.+..|+ +-..++.|..+++........+.. ....-.++.+.+. +.++-...+.|.+.++.....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-- 114 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-- 114 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC--
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE--
Confidence 4578999998655555 555678999999875533332321 2233455665544 445555567888888754321
Q ss_pred eeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEec--CCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEE
Q 009993 219 FDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSW--DMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVAST 292 (520)
Q Consensus 219 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~ 292 (520)
.......-.....|++++ ..|+.... .+.|...++...........-.....+. +++..|+.+
T Consensus 115 -----------~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~a 183 (628)
T 4a0p_A 115 -----------QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWT 183 (628)
T ss_dssp -----------EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEE
T ss_pred -----------EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEE
Confidence 111112334567888863 56666553 4678888876554333333334455555 555665555
Q ss_pred c--CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCc
Q 009993 293 S--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC 349 (520)
Q Consensus 293 ~--d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~ 349 (520)
. .+.|..+|+..... ..+. ........+++.. +.++++-...+.|...|..++.
T Consensus 184 D~~~~~I~~~d~dG~~~-~v~~-~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 184 DLDTNLIESSNMLGLNR-EVIA-DDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp ETTTTEEEEEETTSCSC-EEEE-ECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred ECCCCEEEEEcCCCCce-EEee-ccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 5 68899999876543 2332 2334556778764 4455555567889988876653
No 326
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.76 E-value=0.075 Score=55.09 Aligned_cols=219 Identities=11% Similarity=-0.051 Sum_probs=112.4
Q ss_pred CCeEEEEECCCCcEEEEeCCC-CceEEEEecCCCEEEEE-eCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCe
Q 009993 163 DSIVRMWHLEDGFSIASSKPL-GCTIRAVAADKKLLVAG-GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPI 240 (520)
Q Consensus 163 dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~l~sg-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 240 (520)
.+.|+..++.+......+... ...-.++.+.+..|+.. ...+.|..+++.+... +.. ....+.......
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~------~~~---~~~~i~~~~~~P 455 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG------VSS---YDTVISRDIQAP 455 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-------CC---CCCBCCSCC--C
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCC------Ccc---eEEEEeCCCCCc
Confidence 456888888776554433321 22223556655555554 3457888888754100 000 000010111223
Q ss_pred EEEEEc--C-CEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEE--eeCCCEEEEEc--C-CeEEEEECCCCeeeEEe
Q 009993 241 TSLALD--L-TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGL--APHDTTVASTS--G-SDVYIWDTNSGCLLTVV 311 (520)
Q Consensus 241 ~~l~~~--~-~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~--d-~~i~iwd~~~~~~~~~~ 311 (520)
..|+++ + +++++-...+.|.++++........+. .......+ .+.+..|+.+. . +.|..+++...... .+
T Consensus 456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~-~l 534 (699)
T 1n7d_A 456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SL 534 (699)
T ss_dssp CCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC-EE
T ss_pred ceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee-EE
Confidence 445653 3 344444566889999987654443333 11222333 35444444443 2 67888877543322 22
Q ss_pred ecccccceEEEEecCCCCEEE-EEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEE-EEeCCCcEEEE
Q 009993 312 NGAHVGNTKSLARSHTGDFLF-TGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLV-SAAGDGKLSLI 389 (520)
Q Consensus 312 ~~~~~~~i~~l~~s~~~~~l~-tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~-s~s~dg~i~vw 389 (520)
........+.|+++|++..|+ +-+..+.|..+++..... ..+............|+++...|+ +....+.|..+
T Consensus 535 ~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~----~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~ 610 (699)
T 1n7d_A 535 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR----KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSA 610 (699)
T ss_dssp SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC----EEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEE
T ss_pred EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce----EEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEE
Confidence 212234567899998765554 445567899999865421 112111112233455666665444 44556889999
Q ss_pred eCCccc
Q 009993 390 DVRKLL 395 (520)
Q Consensus 390 d~~~~~ 395 (520)
+..++.
T Consensus 611 d~~~G~ 616 (699)
T 1n7d_A 611 NRLTGS 616 (699)
T ss_dssp ETTTEE
T ss_pred EccCCC
Confidence 976543
No 327
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.73 E-value=2.1 Score=43.54 Aligned_cols=150 Identities=11% Similarity=-0.014 Sum_probs=87.0
Q ss_pred CCCeEEEEEc--CCEEEEEe-cCCeEEEEECCCCcE-EEEee-eccCEEEEe--eCCCEEEEE-c-CCeEEEEECCCCee
Q 009993 237 EGPITSLALD--LTRIYSGS-WDMTVRVWDRALLKC-LKVLR-HSDWVYGLA--PHDTTVAST-S-GSDVYIWDTNSGCL 307 (520)
Q Consensus 237 ~~~v~~l~~~--~~~l~s~s-~dg~v~iwd~~~~~~-~~~~~-~~~~v~~~~--~~~~~l~~~-~-d~~i~iwd~~~~~~ 307 (520)
...+..++++ ++.|+.+. ..+.|..+++..... ...+. .-.....++ +.+..++.+ . .+.|.+.++.....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 3456778873 45665554 467888888875532 22222 224455665 434544444 4 68999999876543
Q ss_pred eEEeecccccceEEEEecCCCCEEEEEeC--CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEE-eC
Q 009993 308 LTVVNGAHVGNTKSLARSHTGDFLFTGGE--DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSA-AG 382 (520)
Q Consensus 308 ~~~~~~~~~~~i~~l~~s~~~~~l~tg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~-s~ 382 (520)
...+. ........+++.|.+..|+.... .+.|...++.... ........-...+.|++++ ..|+.+ ..
T Consensus 119 ~~l~~-~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~------~~~l~~~~~~~P~Glald~~~~~LY~aD~~ 191 (619)
T 3s94_A 119 KVLFW-QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS------RFIIINSEIYWPNGLTLDYEEQKLYWADAK 191 (619)
T ss_dssp EEEEC-SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS------CEEEECSSCSSEEEEEEETTTTEEEEEETT
T ss_pred EEEEe-CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc------eEEEEeCCCCCCcEEEEEccCCEEEEEeCC
Confidence 33332 34456778999997666655543 4667777765542 1111222345678899975 455554 45
Q ss_pred CCcEEEEeCCc
Q 009993 383 DGKLSLIDVRK 393 (520)
Q Consensus 383 dg~i~vwd~~~ 393 (520)
.+.|...|+..
T Consensus 192 ~~~I~~~~~dG 202 (619)
T 3s94_A 192 LNFIHKSNLDG 202 (619)
T ss_dssp TCCEEEESSSC
T ss_pred CCeEEEecCCC
Confidence 67899988865
No 328
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.56 E-value=2.4 Score=43.07 Aligned_cols=193 Identities=13% Similarity=0.044 Sum_probs=103.4
Q ss_pred cccEEEEEEccCCCEEEEE-eCCCeEEEEECCCCcE-EEEeCC--CCceEEEEecCCC-EEEEEeCCCcEEEEEcccCcc
Q 009993 142 TEAVLTVFVLASAKLLFTS-GYDSIVRMWHLEDGFS-IASSKP--LGCTIRAVAADKK-LLVAGGTDGFIHCWRAVEVLP 216 (520)
Q Consensus 142 ~~~V~~l~~~~~~~~l~sg-s~dg~v~vwd~~~~~~-~~~~~~--~~~~v~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~ 216 (520)
-+....++|++.+..|+-+ ...+.|..+++..... ...+.. ....-.++.+.+. +.++-...+.|.+.++.....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 4457899999866655544 4467898899875532 222222 2333455666445 445555678898888765421
Q ss_pred eeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEec--CCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEE
Q 009993 217 HLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSW--DMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTV 289 (520)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~--dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l 289 (520)
. ......-.....|++++ +.|+.... .+.|...++.......... .-.....+. +++..|
T Consensus 119 ~-------------~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~L 185 (619)
T 3s94_A 119 K-------------VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKL 185 (619)
T ss_dssp E-------------EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEE
T ss_pred E-------------EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEE
Confidence 1 11112334456778843 56665553 3567667765433222222 233445555 545555
Q ss_pred EEEc--CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCc
Q 009993 290 ASTS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC 349 (520)
Q Consensus 290 ~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~ 349 (520)
+.+. .+.|..+|+.......... +.......+++..+ ..+++-...+.|...|..++.
T Consensus 186 Y~aD~~~~~I~~~~~dG~~~~~~~~-~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 186 YWADAKLNFIHKSNLDGTNRQAVVK-GSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp EEEETTTCCEEEESSSCCEEC----------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred EEEeCCCCeEEEecCCCCccEEEEe-CCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence 5554 5789999987654433322 12223346676544 444454567789888887663
No 329
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.51 E-value=1.3 Score=39.81 Aligned_cols=221 Identities=15% Similarity=0.060 Sum_probs=121.4
Q ss_pred eEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECC
Q 009993 186 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRA 265 (520)
Q Consensus 186 ~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~ 265 (520)
.|..++......+.-. ||.|..|-.......-. + ......|..++......+.-. ||.|..|-..
T Consensus 25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~---------p----~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n 89 (282)
T 3qhy_B 25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTM---------P----AATQSGVDAIAAGNYHSLALK-DGEVIAWGGN 89 (282)
T ss_dssp SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSC---------C----GGGGSCCCEEEECSSEEEEEE-TTEEEEEECC
T ss_pred CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCC---------C----ccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCC
Confidence 4556664444444445 89999997544321100 0 012346777777444433335 9999999765
Q ss_pred CCcEEEEe-eeccCEEEEe-eCCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEE
Q 009993 266 LLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY 343 (520)
Q Consensus 266 ~~~~~~~~-~~~~~v~~~~-~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iw 343 (520)
..-.+..- .....|..++ -....++.. +|.|+.|-......+-. .......|..++...... ++ -. ||.|+.|
T Consensus 90 ~~Gqlg~P~~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~-~~~~~~~i~~i~~G~~~~-~~-l~-~G~v~~w 164 (282)
T 3qhy_B 90 EDGQTTVPAEARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTV-PAEAQSGVTALDGGVYTA-LA-VK-NGGVIAW 164 (282)
T ss_dssp TTSTTCCCGGGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSC-CGGGGSSEEEEEECSSEE-EE-EE-TTEEEEE
T ss_pred CCCCCCCCcccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCC-CccCCCCeEEEEcccCEE-EE-EE-CCEEEEe
Confidence 32211111 1234677777 455566666 99999997654322211 112345677776643322 22 23 7999999
Q ss_pred EcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcc
Q 009993 344 EIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE 423 (520)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (520)
-.........+. .-...|..++....+.+.- .||.|..|-.....+... +... .
T Consensus 165 G~n~~gqlg~p~------~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~---------------p~~~----~ 218 (282)
T 3qhy_B 165 GDNYFGQTTVPA------EAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTV---------------PTEA----L 218 (282)
T ss_dssp ECCTTSTTSCCG------GGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCC---------------CGGG----G
T ss_pred cCCCCCCCCCce------ecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCC---------------Cccc----C
Confidence 765542211111 1135688888876655555 699999998765422211 1111 1
Q ss_pred eeeEEEEecCCEEEEecCCCeEEEEeCCch
Q 009993 424 CNLLSVDIGADRIVCGGEEGIVRIWNFSQA 453 (520)
Q Consensus 424 ~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~ 453 (520)
..+..++......+.-. ||.|+.|-....
T Consensus 219 ~~v~~i~~G~~h~~al~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 219 SGVSAIASGEWYSLALK-NGKVIAWGSSRT 247 (282)
T ss_dssp SSCCEEEECSSCEEEEE-TTEEEEESTTCC
T ss_pred CCceEEEcCCCEEEEEE-CCEEEEecCCCC
Confidence 23555555555333333 899999977653
No 330
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=95.37 E-value=2.8 Score=42.66 Aligned_cols=172 Identities=14% Similarity=0.086 Sum_probs=101.0
Q ss_pred CCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc--CCEEE-EEecCCeEEEEECCCCcEEEEeeec-c
Q 009993 202 TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIY-SGSWDMTVRVWDRALLKCLKVLRHS-D 277 (520)
Q Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~-~ 277 (520)
..+.|+..++.+... .....+ ..-..+..++|+ .+.|+ +-..++.|..+++........+... .
T Consensus 13 ~~~~I~~i~l~~~~~-----------~~~~~~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~ 80 (628)
T 4a0p_A 13 RRADIRRISLETNNN-----------NVAIPL-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLD 80 (628)
T ss_dssp ETTEEEEEESSCTTC-----------EEECCC-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred eCCcEEEEECCCCCc-----------ceEEEc-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCC
Confidence 456788888765321 011111 123457788884 35555 4456789999998765443333311 2
Q ss_pred CEEEEe--eCCCEE-EEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC--CCeEEEEEcccCccc
Q 009993 278 WVYGLA--PHDTTV-ASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE--DGAIHMYEIINDCTE 351 (520)
Q Consensus 278 ~v~~~~--~~~~~l-~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~--dg~i~iwd~~~~~~~ 351 (520)
....++ +.+..| ++-. .+.|.+.++........+. ........+++.|....|+.... .+.|...++....
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~-~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-- 157 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW-KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-- 157 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEEC-SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEe-CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc--
Confidence 333444 444444 4444 6889999987554322222 34456789999996666665542 5678777776552
Q ss_pred cceeeeeeecCCcCCEEEEEecC--CEEEEE-eCCCcEEEEeCCc
Q 009993 352 ANVLLVATWIPHTGPVNSLAFEF--PWLVSA-AGDGKLSLIDVRK 393 (520)
Q Consensus 352 ~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~-s~dg~i~vwd~~~ 393 (520)
...+...-...+.|++++ ..|+.+ ...+.|...|+..
T Consensus 158 -----~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG 197 (628)
T 4a0p_A 158 -----RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG 197 (628)
T ss_dssp -----CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred -----eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC
Confidence 112222445678999975 555555 4567899999865
No 331
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=95.20 E-value=2.6 Score=41.24 Aligned_cols=149 Identities=11% Similarity=-0.006 Sum_probs=82.1
Q ss_pred EEEEec-CCCEEEEEeC-CCcEEEEEcccCcceeeeccCCccccceEEec-cCCCCeEEEEE---------cCCEEEEEe
Q 009993 187 IRAVAA-DKKLLVAGGT-DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLAL---------DLTRIYSGS 254 (520)
Q Consensus 187 v~~~~~-~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~---------~~~~l~s~s 254 (520)
-+++.| ++..|+.+.. .+.|++.|..++....+ .... ........++| +++.|+++.
T Consensus 143 ~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l-----------~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad 211 (496)
T 3kya_A 143 RLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSP-----------LNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAI 211 (496)
T ss_dssp EEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEE-----------ECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEE
T ss_pred EEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEE-----------EccCccccCCCcEEEEeecccccCCCCCEEEEEe
Confidence 446666 3444444443 46688888766532111 0000 01235778888 556676666
Q ss_pred cCC-------eEEEEECCC-Cc--------EEEEeeeccCEEEEeeC-CCEEEEEc-CCeEEEEECC-------CCee--
Q 009993 255 WDM-------TVRVWDRAL-LK--------CLKVLRHSDWVYGLAPH-DTTVASTS-GSDVYIWDTN-------SGCL-- 307 (520)
Q Consensus 255 ~dg-------~v~iwd~~~-~~--------~~~~~~~~~~v~~~~~~-~~~l~~~~-d~~i~iwd~~-------~~~~-- 307 (520)
..+ .|.+++... +. .+..+.+...+ .+.++ +.++++.. ++.|..+|+. ++..
T Consensus 212 ~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~gi-avdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t 290 (496)
T 3kya_A 212 DYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGA-TIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD 290 (496)
T ss_dssp CCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCE-EECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred CCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEE-EEcCCCCeEEEEECCCCEEEEEecccccccccCceeec
Confidence 543 366665443 12 22222233333 44564 45555555 7889999987 5543
Q ss_pred ---------eEE-eecccccceEEEEecCCCCEEEE-EeCCCeEEEEEccc
Q 009993 308 ---------LTV-VNGAHVGNTKSLARSHTGDFLFT-GGEDGAIHMYEIIN 347 (520)
Q Consensus 308 ---------~~~-~~~~~~~~i~~l~~s~~~~~l~t-g~~dg~i~iwd~~~ 347 (520)
... +..+.....+.++|+|+|++|+. -+....|+.++...
T Consensus 291 p~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 291 PIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp CBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred ccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 112 22223345689999999996444 45667898877654
No 332
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=94.91 E-value=2.2 Score=38.93 Aligned_cols=223 Identities=9% Similarity=0.045 Sum_probs=130.3
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCcccc
Q 009993 150 VLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQN 228 (520)
Q Consensus 150 ~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 228 (520)
.+|..+.+|--. ..++.|+|+++...++.+.-. ..|.-+. -+.+.|+-.+ +..|+-|++.....
T Consensus 74 MnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~~L~lVT-~taVyHWs~~~~s~------------ 138 (365)
T 2xzh_A 74 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVALVT-DNAVYHWSMEGESQ------------ 138 (365)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEEEEECSSSEEEEEE-SSEEEEEESSTTCC------------
T ss_pred eCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEEEEecCCCeEEEEc-CCcEEEEcccCCCC------------
Confidence 478888777665 688999999999988877654 4666666 4445555444 45799999865321
Q ss_pred ceEEeccC----CCCeEEEEE--cCCEEEEEe-------cCCeEEEEECCCCcEEEEeeeccCEEEEeeCCC-----EEE
Q 009993 229 TQFRLWEH----EGPITSLAL--DLTRIYSGS-------WDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDT-----TVA 290 (520)
Q Consensus 229 ~~~~~~~h----~~~v~~l~~--~~~~l~s~s-------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~-----~l~ 290 (520)
+...+..| ...|..... +.++++..+ -.|.+.+|..+.+.....-.|...-..+..+|+ +++
T Consensus 139 P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~ 218 (365)
T 2xzh_A 139 PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFC 218 (365)
T ss_dssp CEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEE
T ss_pred CceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeeeeeeeEEEecCCCCCCceEEE
Confidence 22222222 223333333 334433222 236788998876544333234444444432222 333
Q ss_pred EEc----CCeEEEEECCCC---ee------eEEeec--ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcccccee
Q 009993 291 STS----GSDVYIWDTNSG---CL------LTVVNG--AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVL 355 (520)
Q Consensus 291 ~~~----d~~i~iwd~~~~---~~------~~~~~~--~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~ 355 (520)
.+. .+.++|.++... .. +..+.. ....-..++..++....+..-+.-|.|++||+.++ .
T Consensus 219 fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTg------t 292 (365)
T 2xzh_A 219 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG------T 292 (365)
T ss_dssp EEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC------C
T ss_pred EEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccC------c
Confidence 333 268999988432 11 111111 12334567888888889999999999999999999 5
Q ss_pred eeeeecCCcCCEEEEEec--CCEEEEEeCCCcEEEEeCCc
Q 009993 356 LVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 356 ~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~ 393 (520)
++..-+-...+|-.-+.+ ..-++.....|.|.--.++.
T Consensus 293 ~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 293 CIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp EEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECT
T ss_pred EEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECc
Confidence 655544445555444432 24555556777666655554
No 333
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.83 E-value=2.1 Score=38.42 Aligned_cols=221 Identities=15% Similarity=0.040 Sum_probs=120.7
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccC
Q 009993 144 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISG 223 (520)
Q Consensus 144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~ 223 (520)
.|..++.... ..+.-. ||.|..|-....-.+..-......|..++......+.-. ||.|..|-.......-.
T Consensus 25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~---- 96 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV---- 96 (282)
T ss_dssp SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC----
T ss_pred CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC----
Confidence 4666665432 223334 899999976543222111111234566664444333334 89999997544221100
Q ss_pred CccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCC-cEEEEeeeccCEEEEeeCCCEEEEEcCCeEEEEEC
Q 009993 224 SEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALL-KCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDT 302 (520)
Q Consensus 224 ~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~iwd~ 302 (520)
. ..-...|..++......+.-. ||.|..|-.... ++-........|..++......+.-.+|.|+.|-.
T Consensus 97 ---P------~~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~~G~v~~wG~ 166 (282)
T 3qhy_B 97 ---P------AEARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGD 166 (282)
T ss_dssp ---C------GGGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEETTEEEEEEC
T ss_pred ---C------cccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEECCEEEEecC
Confidence 0 011347888888666655566 999999976542 22111123456777775444433333899999976
Q ss_pred CCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeC
Q 009993 303 NSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAG 382 (520)
Q Consensus 303 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~ 382 (520)
.....+. ++..-...|..++..... .++. .||.|+.|=......... +. .....|..|+....+.+.-.
T Consensus 167 n~~gqlg-~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~--p~----~~~~~v~~i~~G~~h~~al~- 235 (282)
T 3qhy_B 167 NYFGQTT-VPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTV--PT----EALSGVSAIASGEWYSLALK- 235 (282)
T ss_dssp CTTSTTS-CCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCC--CG----GGGSSCCEEEECSSCEEEEE-
T ss_pred CCCCCCC-CceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCC--Cc----ccCCCceEEEcCCCEEEEEE-
Confidence 6432221 111123467777764332 2333 599999997655422111 11 11235777877665555555
Q ss_pred CCcEEEEeCCc
Q 009993 383 DGKLSLIDVRK 393 (520)
Q Consensus 383 dg~i~vwd~~~ 393 (520)
||.|..|-...
T Consensus 236 ~g~v~~wG~n~ 246 (282)
T 3qhy_B 236 NGKVIAWGSSR 246 (282)
T ss_dssp TTEEEEESTTC
T ss_pred CCEEEEecCCC
Confidence 99999998765
No 334
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=94.65 E-value=3.2 Score=39.59 Aligned_cols=300 Identities=15% Similarity=0.072 Sum_probs=158.0
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc-----------EEEEeC-CCCceEEEEecCCCEEEEEeCC-CcEEEE
Q 009993 143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF-----------SIASSK-PLGCTIRAVAADKKLLVAGGTD-GFIHCW 209 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~-----------~~~~~~-~~~~~v~~~~~~~~~l~sg~~d-g~i~vw 209 (520)
..|..++.- +...+.-..||.|..|-....- ....+. .....|..++......+.-..| +.|..|
T Consensus 16 ~~v~~ia~G--~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~w 93 (406)
T 4d9s_A 16 RKVLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSW 93 (406)
T ss_dssp CCEEEEEEC--SSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEE
T ss_pred cceEEEecC--CCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEE
Confidence 456666553 4455556678999999653311 011111 1123577777555555555555 489999
Q ss_pred EcccCcceeeeccCCccccceEEecc-CCCCeEEEEEcCCEEEEEecCCeEEEEECCCC-c--------E--EEEee--e
Q 009993 210 RAVEVLPHLFDISGSEKQNTQFRLWE-HEGPITSLALDLTRIYSGSWDMTVRVWDRALL-K--------C--LKVLR--H 275 (520)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~-~--------~--~~~~~--~ 275 (520)
-.......-.. ..........+.. ....|..++......+.-..||.|..|-.... + . ...+. .
T Consensus 94 G~n~~GqLG~g--~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 171 (406)
T 4d9s_A 94 GWGDFGRLGHG--NSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE 171 (406)
T ss_dssp ECCGGGTTCSS--SCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGT
T ss_pred cCCCCcCCCCC--CCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccC
Confidence 65332110000 0000001111111 23368888887777777788999999965421 1 1 11111 2
Q ss_pred ccCEEEEeeCCCEE-EEEcCCeEEEEECCCCe-----------eeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEE
Q 009993 276 SDWVYGLAPHDTTV-ASTSGSDVYIWDTNSGC-----------LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY 343 (520)
Q Consensus 276 ~~~v~~~~~~~~~l-~~~~d~~i~iwd~~~~~-----------~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iw 343 (520)
...|..++...... +...+|.|+.|-..... ....+.......|..++.. ....+.-..||.|+.|
T Consensus 172 ~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~ht~~l~~~G~v~~w 249 (406)
T 4d9s_A 172 GIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG--WRHTISVSYSGALYTY 249 (406)
T ss_dssp TCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC--SSEEEEEETTCCEEEE
T ss_pred CCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC--CCcEEEEcCCCCEEEe
Confidence 23677887555444 44459999999654211 1111111112345555543 3344555688999998
Q ss_pred EcccCccc------cceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcc
Q 009993 344 EIINDCTE------ANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQR 417 (520)
Q Consensus 344 d~~~~~~~------~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (520)
-....... ....+...-......|..|+....+.+.-..||.|+.|-.....+........... +..
T Consensus 250 G~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~-------p~~ 322 (406)
T 4d9s_A 250 GWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS-------PVQ 322 (406)
T ss_dssp ECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEE-------EEE
T ss_pred eCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCcc-------CEE
Confidence 75432111 00011111111234588888877788888899999999876543332211111110 011
Q ss_pred cccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHh
Q 009993 418 MLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFE 455 (520)
Q Consensus 418 ~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~ 455 (520)
+.......|..++......+.-..||.|+.|-....-+
T Consensus 323 v~~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~Gq 360 (406)
T 4d9s_A 323 VRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQ 360 (406)
T ss_dssp ECCGGGCCEEEEEECSSEEEEEETTSCEEEEECCTTST
T ss_pred EeccCCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCc
Confidence 11112235777777777667777899999998765433
No 335
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=94.18 E-value=4 Score=38.85 Aligned_cols=260 Identities=9% Similarity=0.012 Sum_probs=148.8
Q ss_pred CCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeE
Q 009993 162 YDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPIT 241 (520)
Q Consensus 162 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 241 (520)
.+..|.|-|+.++..+...+- ...-.-+.|..+.++.-. ..++.++|+++.. ..... .....|.
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi-~AdsAIMnP~~~iiALra-g~~lQiFnle~K~-------------klks~-~~~e~Vv 109 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPI-SADSAIMNPASKVIALKA-GKTLQIFNIEMKS-------------KMKAH-TMTDDVT 109 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEEC-CCSEEEECSSSSCEEEEE-TTEEEEEETTTTE-------------EEEEE-ECSSCCC
T ss_pred CCCeEEEEECCCCCcceeccc-ccceeeeCCCCcEEEEec-CCeEEEEchHHhh-------------hhcce-ecCCCce
Confidence 344799999988655432221 112223457777776655 6789999997642 11111 2245677
Q ss_pred EEEE-cCCEEEEEecCCeEEEEECCC-CcEEEEee-e----ccCEEEEe--eCCCEEEEEc----C----CeEEEEECCC
Q 009993 242 SLAL-DLTRIYSGSWDMTVRVWDRAL-LKCLKVLR-H----SDWVYGLA--PHDTTVASTS----G----SDVYIWDTNS 304 (520)
Q Consensus 242 ~l~~-~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~-~----~~~v~~~~--~~~~~l~~~~----d----~~i~iwd~~~ 304 (520)
--.| +.+.|+-.+. ..|+-|++.. ..+.+.+. | ...|.... ++.++++..+ + |.+.+|..+.
T Consensus 110 fWkWis~~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er 188 (494)
T 1bpo_A 110 FWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (494)
T ss_dssp EEEEEETTEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT
T ss_pred EEEecCCCeEEEEcC-CeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc
Confidence 7777 7888776664 6899999974 34555554 2 33444443 6777766433 2 6788999877
Q ss_pred CeeeEEeecccccceEEEEecCCC---CEEEEEeC---CCeEEEEEcccCc---cccceeeeeeecC---CcCCEEEEEe
Q 009993 305 GCLLTVVNGAHVGNTKSLARSHTG---DFLFTGGE---DGAIHMYEIINDC---TEANVLLVATWIP---HTGPVNSLAF 372 (520)
Q Consensus 305 ~~~~~~~~~~~~~~i~~l~~s~~~---~~l~tg~~---dg~i~iwd~~~~~---~~~~~~~~~~~~~---h~~~v~~l~~ 372 (520)
+... .+ .||......+.+.-+. ..++.+.. .++++|.++.... .....+.+..+.. -.+-..++..
T Consensus 189 ~~sQ-~i-eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqv 266 (494)
T 1bpo_A 189 KVSQ-PI-EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 266 (494)
T ss_dssp CCEE-EE-CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEE
T ss_pred cccc-hh-eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEe
Confidence 6433 23 3676655555443211 23333333 2789999986541 1111111111111 2344566777
Q ss_pred cC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEe--cCCEEEEecCCCeEEEE
Q 009993 373 EF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--GADRIVCGGEEGIVRIW 448 (520)
Q Consensus 373 ~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~~Dg~v~iw 448 (520)
++ ..++.-+.-|.|.+||+.++...+. -+-...+++.-++ ...-++.....|.|.--
T Consensus 267 s~kygviyviTK~G~i~lyDleTgt~i~~-------------------nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v 327 (494)
T 1bpo_A 267 SEKHDVVFLITKYGYIHLYDLETGTCIYM-------------------NRISGETIFVTAPHEATAGIIGVNRKGQVLSV 327 (494)
T ss_dssp ETTTTEEEEEETTSEEEEEETTTCCEEEE-------------------EECCSSCEEEEEEETTTTEEEEEETTCEEEEE
T ss_pred cccCCEEEEEecCceEEEEecccceeeee-------------------ecccCCceEEecccCCCCcEEEEccCceEEEE
Confidence 66 5888889999999999998643321 1111122333333 23355555677888777
Q ss_pred eCCchHhHHHH
Q 009993 449 NFSQAFEIERR 459 (520)
Q Consensus 449 d~~~~~~~~~~ 459 (520)
.+.+...+.-.
T Consensus 328 ~v~e~~ivpyi 338 (494)
T 1bpo_A 328 CVEEENIIPYI 338 (494)
T ss_dssp EECTTTHHHHH
T ss_pred EEccccchhhh
Confidence 77766655443
No 336
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=94.09 E-value=0.018 Score=58.69 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=32.3
Q ss_pred ccCCCHHHHHHHccCC-ChhhhHHHhhhhhhHHHhh
Q 009993 64 ITDLPPALISEILNCL-DPKELGIVSCVSPILHRLA 98 (520)
Q Consensus 64 ~~~LP~el~~~i~~~L-~~~~l~~~s~v~~~~~~~~ 98 (520)
...||+|++.+||+|| +++++.+++.|||+|+.+.
T Consensus 13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~ 48 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID 48 (592)
T ss_dssp CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence 4579999999999999 8999999999999999983
No 337
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.08 E-value=7.3 Score=43.13 Aligned_cols=218 Identities=10% Similarity=0.048 Sum_probs=118.7
Q ss_pred CCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeE
Q 009993 162 YDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPIT 241 (520)
Q Consensus 162 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 241 (520)
....|.|-|+.++..+...+ -...-.-+.|..+.++.-+ ..++.|+|+++.. .... .....+|.
T Consensus 46 ~~~~vvIidl~~~~~~~rrp-i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~-------------klks-~~~~e~Vv 109 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRP-ISADSAIMNPASKVIALKA-GKTLQIFNIEMKS-------------KMKA-HTMTDDVT 109 (1630)
T ss_pred CCceEEEEECCCCCCccccc-ccchhhccCCCcceEEEec-CCeEEEeehHHhh-------------hhcc-cccCCCce
Confidence 34478899998866542221 1111112346666666554 6789999987642 1111 12245676
Q ss_pred EEEE-cCCEEEEEecCCeEEEEECCCC-cEEEEee-e----ccCEEEEe--eCCCEEEEEc--------CCeEEEEECCC
Q 009993 242 SLAL-DLTRIYSGSWDMTVRVWDRALL-KCLKVLR-H----SDWVYGLA--PHDTTVASTS--------GSDVYIWDTNS 304 (520)
Q Consensus 242 ~l~~-~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~-~----~~~v~~~~--~~~~~l~~~~--------d~~i~iwd~~~ 304 (520)
--.| +.+.|+-.+. ..|.-|++... .+.+.+. | ...|.... ++.++++..+ .|.+.+|..+.
T Consensus 110 fWkWis~~~l~lVT~-~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er 188 (1630)
T 1xi4_A 110 FWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (1630)
T ss_pred EEEecCCCeeEEEcC-CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc
Confidence 6677 7777666654 57999999642 3333333 2 33444433 6677766433 27788888876
Q ss_pred CeeeEEeecccccceEEEEec--CCCCEEEE-EeC---CCeEEEEEcccCc---cccceeeeeeecCC---cCCEEEEEe
Q 009993 305 GCLLTVVNGAHVGNTKSLARS--HTGDFLFT-GGE---DGAIHMYEIINDC---TEANVLLVATWIPH---TGPVNSLAF 372 (520)
Q Consensus 305 ~~~~~~~~~~~~~~i~~l~~s--~~~~~l~t-g~~---dg~i~iwd~~~~~---~~~~~~~~~~~~~h---~~~v~~l~~ 372 (520)
+... .+ .||.+....+... +....|++ +.. .++++|-++.... .....+.+..+.+. .+-..++..
T Consensus 189 ~~sQ-~i-egha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~v 266 (1630)
T 1xi4_A 189 KVSQ-PI-EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 266 (1630)
T ss_pred ccch-hh-hHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEe
Confidence 5332 12 2565544333332 11122222 221 3789999986541 11111111111111 223345555
Q ss_pred cC--CEEEEEeCCCcEEEEeCCcccccC
Q 009993 373 EF--PWLVSAAGDGKLSLIDVRKLLRSG 398 (520)
Q Consensus 373 ~~--~~l~s~s~dg~i~vwd~~~~~~~~ 398 (520)
++ ..+...+.-|.|.++|+.++...+
T Consensus 267 s~k~g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 267 SEKHDVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred ccccCEEEEEecCceEEEEecccchhhh
Confidence 55 578888899999999999975544
No 338
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=93.54 E-value=5.3 Score=38.09 Aligned_cols=259 Identities=14% Similarity=0.032 Sum_probs=141.4
Q ss_pred ceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEEC
Q 009993 185 CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDR 264 (520)
Q Consensus 185 ~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~ 264 (520)
..|..++......+.-..||.|..|-.......-..............+ .-...|..++......+.-..||.|..|-.
T Consensus 59 ~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v-~l~~~i~~va~G~~hs~alt~~G~v~~wG~ 137 (413)
T 1a12_A 59 EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKV-ELQEKVVQVSAGDSHTAALTDDGRVFLWGS 137 (413)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEEC-CCCSCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred CCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEe-cCCCcEEEEecCCCeEEEEcCCCcEEEeeC
Confidence 5677777666777777889999999764321100000000000011111 123478888887777777788999999974
Q ss_pred --CC-CcE-----------EEEeeeccCEEEEeeCCCE-EEEEcCCeEEEEECCCCeee---------------------
Q 009993 265 --AL-LKC-----------LKVLRHSDWVYGLAPHDTT-VASTSGSDVYIWDTNSGCLL--------------------- 308 (520)
Q Consensus 265 --~~-~~~-----------~~~~~~~~~v~~~~~~~~~-l~~~~d~~i~iwd~~~~~~~--------------------- 308 (520)
.. +++ ...+.....|..++..... ++...+|.|+.|-....-.+
T Consensus 138 ~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~ 217 (413)
T 1a12_A 138 FRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLV 217 (413)
T ss_dssp EEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHS
T ss_pred CcCCCCccCcCCccccccCCEEecCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCcccccccccccccccccc
Confidence 21 111 1111234567777755444 44455899999976532110
Q ss_pred -EEeecc-----cccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccc--------cceeeeeeecCCcCCEEEEEecC
Q 009993 309 -TVVNGA-----HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE--------ANVLLVATWIPHTGPVNSLAFEF 374 (520)
Q Consensus 309 -~~~~~~-----~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~h~~~v~~l~~~~ 374 (520)
..+... ....|..++... .+.+.-..||.|+.|-....... ..+..+..+......|..|+...
T Consensus 218 P~~v~~~~~g~~~~~~i~~ia~G~--~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~ 295 (413)
T 1a12_A 218 PKCVMLKSRGSRGHVRFQDAFCGA--YFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQ 295 (413)
T ss_dssp CEECCCBCSSCCSBCCEEEEEEET--TEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECS
T ss_pred CceEeeccccccCCccEEEEEeCC--CEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEeccc
Confidence 001100 123455555543 33444457899999976532111 11112222222224588888877
Q ss_pred CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchH
Q 009993 375 PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAF 454 (520)
Q Consensus 375 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~ 454 (520)
.+.+.-..||.|+.|-.....+...............+ ... ..|..++......+.-..||.|+.|-.....
T Consensus 296 ~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v-------~~l-~~v~~v~~G~~hs~alt~~G~v~~wG~n~~g 367 (413)
T 1a12_A 296 HHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLI-------SRL-PAVSSVACGASVGYAVTKDGRVFAWGMGTNY 367 (413)
T ss_dssp SEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEEC-------CSS-SSEEEEEECSSEEEEEETTSCEEEEECCTTS
T ss_pred ceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEe-------ccc-CceeEEEECcceEEEEeCCCCEEEecCCCCC
Confidence 78788889999999987764333221111111000011 111 1577777777766667789999999876543
No 339
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=93.07 E-value=7.1 Score=38.14 Aligned_cols=193 Identities=8% Similarity=-0.045 Sum_probs=101.5
Q ss_pred cEEEEEEccC-C-CEEEEEeCCCeEEEEECCCCcEEEEeCCC-----CceEEEE-------ecCCCEEEEEeCCC-c---
Q 009993 144 AVLTVFVLAS-A-KLLFTSGYDSIVRMWHLEDGFSIASSKPL-----GCTIRAV-------AADKKLLVAGGTDG-F--- 205 (520)
Q Consensus 144 ~V~~l~~~~~-~-~~l~sgs~dg~v~vwd~~~~~~~~~~~~~-----~~~v~~~-------~~~~~~l~sg~~dg-~--- 205 (520)
....|+|+|. + +++++-...+.|++.|+.++......... ...-.++ .+++..|+++...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4578999983 4 44444444567899998877655433321 1344567 77888666666554 2
Q ss_pred ---EEEEEccc-CcceeeeccCCccccceEEeccCCCCeEEEEEc---CCEEEEEecCCeEEEEECC-------CCcE--
Q 009993 206 ---IHCWRAVE-VLPHLFDISGSEKQNTQFRLWEHEGPITSLALD---LTRIYSGSWDMTVRVWDRA-------LLKC-- 269 (520)
Q Consensus 206 ---i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~v~iwd~~-------~~~~-- 269 (520)
|.+.+... +.. ...........+ . ....++++ +.++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~-----~~~~~~~~v~~~-~---~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t 290 (496)
T 3kya_A 220 SPSVYIIKRNADGTF-----DDRSDIQLIAAY-K---QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD 290 (496)
T ss_dssp EEEEEEEECCTTSCC-----STTSCEEEEEEE-S---CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred CceEEEEecCCCCce-----eecccceeeccC-C---CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeec
Confidence 55554322 110 000000011111 2 22345563 3455566677889999987 4543
Q ss_pred ---------EEE-ee--eccCEE--EEeeCCCEEEEEc--CCeEEEEEC--CCCee--eEEeec--cc------------
Q 009993 270 ---------LKV-LR--HSDWVY--GLAPHDTTVASTS--GSDVYIWDT--NSGCL--LTVVNG--AH------------ 315 (520)
Q Consensus 270 ---------~~~-~~--~~~~v~--~~~~~~~~l~~~~--d~~i~iwd~--~~~~~--~~~~~~--~~------------ 315 (520)
... +. ...+-. ++.++++.|+.+. .+.|+.+|. ..+.. ...+.. +.
T Consensus 291 p~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~ 370 (496)
T 3kya_A 291 PIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEAR 370 (496)
T ss_dssp CBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCB
T ss_pred ccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccc
Confidence 112 22 223333 4458888655554 688888654 33332 112211 00
Q ss_pred ccceE-EEEec-------CCCCEEEEEeCCCeEEEEEc
Q 009993 316 VGNTK-SLARS-------HTGDFLFTGGEDGAIHMYEI 345 (520)
Q Consensus 316 ~~~i~-~l~~s-------~~~~~l~tg~~dg~i~iwd~ 345 (520)
-.... .++.. +++.++++=..++.|+.++.
T Consensus 371 f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~ 408 (496)
T 3kya_A 371 MNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP 408 (496)
T ss_dssp CSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT
T ss_pred cCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC
Confidence 11234 44444 45666666667788999883
No 340
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.06 E-value=8 Score=39.86 Aligned_cols=198 Identities=10% Similarity=0.025 Sum_probs=101.3
Q ss_pred cCCCEEEEEeCC----CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecC------CeE
Q 009993 192 ADKKLLVAGGTD----GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD------MTV 259 (520)
Q Consensus 192 ~~~~~l~sg~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d------g~v 259 (520)
.++..++.|+.+ ..+.+||..++.-......... .........-....+ ++..++.|+.+ ..+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~-----~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv 470 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSS-----SEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDN 470 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCC-----SCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCC
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCC-----CCCCccccceEEEEEccCCEEEEEcCCCCCCCccccE
Confidence 667777888754 4577888766532221100000 001111122334455 56667777654 357
Q ss_pred EEEECCCCcEEEEee--ec-cCEEEEe-eCCCEEEEEc-CC--eEEEEECCCCeeeEEeec----ccccceEEEEecCC-
Q 009993 260 RVWDRALLKCLKVLR--HS-DWVYGLA-PHDTTVASTS-GS--DVYIWDTNSGCLLTVVNG----AHVGNTKSLARSHT- 327 (520)
Q Consensus 260 ~iwd~~~~~~~~~~~--~~-~~v~~~~-~~~~~l~~~~-d~--~i~iwd~~~~~~~~~~~~----~~~~~i~~l~~s~~- 327 (520)
.+||..+.+-...-. .. ..-.++. .++.+++.|+ ++ .+.+||+.+..-...-.. .......++.+..+
T Consensus 471 ~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 471 WIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp EEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred EEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence 889988754332221 11 1112233 3777777776 43 799999988753222110 01111223455554
Q ss_pred CCEEEEEeC--C-----CeEEEEEcccCcc--ccceeeeeee-cCCcCCEEEEEec-CCEEEEEeC--------CCcEEE
Q 009993 328 GDFLFTGGE--D-----GAIHMYEIINDCT--EANVLLVATW-IPHTGPVNSLAFE-FPWLVSAAG--------DGKLSL 388 (520)
Q Consensus 328 ~~~l~tg~~--d-----g~i~iwd~~~~~~--~~~~~~~~~~-~~h~~~v~~l~~~-~~~l~s~s~--------dg~i~v 388 (520)
+.+++.|+. + ..+.+||+.+..- ......+... ........++.++ +..++.|+. ...|.+
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 630 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIIS 630 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEE
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEE
Confidence 667777765 2 4588999887741 0001112111 0111223445566 667777764 346889
Q ss_pred EeCCcc
Q 009993 389 IDVRKL 394 (520)
Q Consensus 389 wd~~~~ 394 (520)
||+.+.
T Consensus 631 yd~~t~ 636 (695)
T 2zwa_A 631 LDPLSE 636 (695)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 998864
No 341
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=92.30 E-value=7.9 Score=36.80 Aligned_cols=259 Identities=14% Similarity=0.094 Sum_probs=138.0
Q ss_pred CceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEecc-CCCCeEEEEEcCCEEEEEecC-CeEEE
Q 009993 184 GCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE-HEGPITSLALDLTRIYSGSWD-MTVRV 261 (520)
Q Consensus 184 ~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~l~s~s~d-g~v~i 261 (520)
...|..++.-....+.-..||.|..|-.......-.. ..........+.. ....|..++......+.-..| +.|..
T Consensus 15 ~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g--~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~ 92 (406)
T 4d9s_A 15 PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHG--DAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYS 92 (406)
T ss_dssp CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSS--SCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEE
T ss_pred ccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCC--CcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEE
Confidence 4467777766777777778899988865432110000 0000011111111 234688888866665555555 49999
Q ss_pred EECCCC---------cEEE--Eee--eccCEEEEeeCCCE-EEEEcCCeEEEEECCCC-e----------eeEEeecccc
Q 009993 262 WDRALL---------KCLK--VLR--HSDWVYGLAPHDTT-VASTSGSDVYIWDTNSG-C----------LLTVVNGAHV 316 (520)
Q Consensus 262 wd~~~~---------~~~~--~~~--~~~~v~~~~~~~~~-l~~~~d~~i~iwd~~~~-~----------~~~~~~~~~~ 316 (520)
|-.... .... .+. ....|..++..... ++...+|.|+.|-.... + ....+..-..
T Consensus 93 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~ 172 (406)
T 4d9s_A 93 WGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEG 172 (406)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTT
T ss_pred EcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCC
Confidence 954321 1111 111 23368888855444 44555999999975432 1 1111211112
Q ss_pred cceEEEEecCCCCEEEEEeCCCeEEEEEcccCccc------cceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEe
Q 009993 317 GNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE------ANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLID 390 (520)
Q Consensus 317 ~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~------~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd 390 (520)
..|..++.. ..+.+.-..||.|+.|-....... ....+..........|..++....+.+.-..||.|+.|-
T Consensus 173 ~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG 250 (406)
T 4d9s_A 173 IRIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYG 250 (406)
T ss_dssp CCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEE
T ss_pred CcEEEEecC--CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEee
Confidence 256666553 345555668999999965432110 111111111112346888888788888889999999998
Q ss_pred CCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCch
Q 009993 391 VRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQA 453 (520)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~ 453 (520)
.....+...........+ .....+ ....|..++......+.-..||.|+.|-....
T Consensus 251 ~n~~GqlG~g~~~~~~~p-----~~v~~~--~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~ 306 (406)
T 4d9s_A 251 WSKYGQLGHGDLEDHLIP-----HKLEAL--SNSFISQISGGWRHTMALTSDGKLYGWGWNKF 306 (406)
T ss_dssp CCTTSTTCSSSCCCEEEE-----EECGGG--TTSCEEEEEECSSEEEEEETTSCEEEEECCTT
T ss_pred CCCCCCCCCCCCcCcccc-----EEeccc--CCCCEEEEEecCCEEEEEcCCCeEEEeeCCCC
Confidence 765433322211111100 001111 12346667766666666678999999986543
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.07 E-value=4.9 Score=41.46 Aligned_cols=186 Identities=10% Similarity=0.051 Sum_probs=94.8
Q ss_pred cCCCEEEEEeCC----CeEEEEECCCCcEEEEe--------CCC-CceEEEEec-CCCEEEEEeCCC------cEEEEEc
Q 009993 152 ASAKLLFTSGYD----SIVRMWHLEDGFSIASS--------KPL-GCTIRAVAA-DKKLLVAGGTDG------FIHCWRA 211 (520)
Q Consensus 152 ~~~~~l~sgs~d----g~v~vwd~~~~~~~~~~--------~~~-~~~v~~~~~-~~~~l~sg~~dg------~i~vwd~ 211 (520)
.++.+++.|+.+ ..+.+||..+++-...- ... .....+... ++..++.|+.++ .+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456777777753 45888898776533222 111 111112222 777888887543 4677777
Q ss_pred ccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCC--eEEEEECCCCcEEEEee--------eccCEE
Q 009993 212 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDM--TVRVWDRALLKCLKVLR--------HSDWVY 280 (520)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~--------~~~~v~ 280 (520)
.+..-.. ...+......-.+..+ ++..++.|+.++ .+.+||..+..-...-. ......
T Consensus 476 ~t~~W~~-----------~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~ 544 (695)
T 2zwa_A 476 KTREWSM-----------IKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGL 544 (695)
T ss_dssp TTTEEEE-----------CCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEE
T ss_pred CCCcEEE-----------CCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEE
Confidence 6643111 1111111222233444 777888887655 68999998765333221 111112
Q ss_pred EEeeC-CCEEEEEc-C-------CeEEEEECCCCee-----eEEeec-c-cccceEEEEecCCCCEEEEEeCC-------
Q 009993 281 GLAPH-DTTVASTS-G-------SDVYIWDTNSGCL-----LTVVNG-A-HVGNTKSLARSHTGDFLFTGGED------- 337 (520)
Q Consensus 281 ~~~~~-~~~l~~~~-d-------~~i~iwd~~~~~~-----~~~~~~-~-~~~~i~~l~~s~~~~~l~tg~~d------- 337 (520)
.+... +.+++.|+ + +.+.+||+.+..- ...+.. . ....-.+++...++.+++.|+.+
T Consensus 545 v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~ 624 (695)
T 2zwa_A 545 EFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDR 624 (695)
T ss_dssp EEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCT
T ss_pred EEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCC
Confidence 22333 55666665 2 3589999988761 122211 0 11111122222236667777642
Q ss_pred -CeEEEEEcccC
Q 009993 338 -GAIHMYEIIND 348 (520)
Q Consensus 338 -g~i~iwd~~~~ 348 (520)
..+.+||+.+.
T Consensus 625 ~~~v~~yd~~t~ 636 (695)
T 2zwa_A 625 TNSIISLDPLSE 636 (695)
T ss_dssp TTSEEEEETTTT
T ss_pred CCeEEEEECCCC
Confidence 34777777665
No 343
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=91.03 E-value=11 Score=35.95 Aligned_cols=257 Identities=12% Similarity=-0.007 Sum_probs=140.3
Q ss_pred eEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEEC-
Q 009993 186 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDR- 264 (520)
Q Consensus 186 ~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~- 264 (520)
.|..++..+...+.-..||.|..|-.......-..............+ .....|..++......+.-..||.|..|-.
T Consensus 76 ~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v-~~~~~i~~va~G~~hs~al~~~G~v~~wG~~ 154 (423)
T 3mvd_K 76 DAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLI-DLPGKALCISAGDSHSACLLEDGRVFAWGSF 154 (423)
T ss_dssp SEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEEC-CCSSCEEEEEECSSEEEEEETTSCEEEEECE
T ss_pred CceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEE-cCCCCEEEEEcCcCeEEEEeCCCeEEEEeCC
Confidence 467777777788888899999999754422110000000000111111 123568888887777777788999999975
Q ss_pred -CC-CcE---------EE-EeeeccCEEEEeeCCCE-EEEEcCCeEEEEECCCCee----------------------eE
Q 009993 265 -AL-LKC---------LK-VLRHSDWVYGLAPHDTT-VASTSGSDVYIWDTNSGCL----------------------LT 309 (520)
Q Consensus 265 -~~-~~~---------~~-~~~~~~~v~~~~~~~~~-l~~~~d~~i~iwd~~~~~~----------------------~~ 309 (520)
.. +++ .. .+.....|..++..... ++...+|.|+.|-....-. ..
T Consensus 155 ~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~ 234 (423)
T 3mvd_K 155 RDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPT 234 (423)
T ss_dssp ECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCE
T ss_pred CCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCe
Confidence 22 221 00 11134467778754444 4555599999996432110 11
Q ss_pred EeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccc--------cceeeeeeecCCcCCEEEEEecCCEEEEEe
Q 009993 310 VVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE--------ANVLLVATWIPHTGPVNSLAFEFPWLVSAA 381 (520)
Q Consensus 310 ~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s 381 (520)
.+.......|..++... ...++.-..||.|+.|-....... ....++.. ....|..|+....+.+.-.
T Consensus 235 ~v~~~~~~~v~~i~~g~-~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~---~~~~v~~ia~G~~ht~alt 310 (423)
T 3mvd_K 235 QLIITRAKPFEAIWATN-YCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKT---ELKDIRHIAGGQHHTVILT 310 (423)
T ss_dssp EECCTTCCCEEEEEEET-TEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEE---CCCSEEEEEECSSEEEEEE
T ss_pred EEeecCCccEEEEEECC-cEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEc---CCCCeEEEEcccCeEEEEe
Confidence 11111223455554432 122333357888988875442111 00111111 1346888888778888888
Q ss_pred CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchH
Q 009993 382 GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAF 454 (520)
Q Consensus 382 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~ 454 (520)
.||.|+.|-.....+...............+ ......|..++......+.-..||.|+.|-....-
T Consensus 311 ~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v-------~~l~~~v~~ia~G~~hs~alt~~G~v~~wG~n~~G 376 (423)
T 3mvd_K 311 TDLKCSVVGRPEYGRLGLGDVKDVVEKPTIV-------KKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNN 376 (423)
T ss_dssp TTCCEEEEECCGGGTTCSSSCCSCEEEEEEC-------TTCCSCEEEEEEETTEEEEEETTSCEEEEECCTTS
T ss_pred CCCcEEEEECCCCCCCCCCCccccccCceEe-------ccCCCCEEEEEcCCCeEEEEcCCCCEEEECCCCCC
Confidence 9999999987765433322221111111111 11112577777777766666889999999876543
No 344
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=89.00 E-value=14 Score=34.17 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=38.8
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEECCCCcE--EEEeC-----CCCceEEEEecC---CCEEEEEeC-C-----CcEE
Q 009993 144 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS--IASSK-----PLGCTIRAVAAD---KKLLVAGGT-D-----GFIH 207 (520)
Q Consensus 144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~--~~~~~-----~~~~~v~~~~~~---~~~l~sg~~-d-----g~i~ 207 (520)
.-..++|.|+|+++++ ..+|.|.+++ ++.. +..+. .....-.+++++ +..|+.+.. . +.|.
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 4579999999985554 5679999998 4432 22221 112222345566 445554433 2 5677
Q ss_pred EEEccc
Q 009993 208 CWRAVE 213 (520)
Q Consensus 208 vwd~~~ 213 (520)
.++...
T Consensus 109 r~~~~~ 114 (352)
T 2ism_A 109 RLRHLG 114 (352)
T ss_dssp EEEECS
T ss_pred EEEeCC
Confidence 777653
No 345
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=88.27 E-value=2.6 Score=36.04 Aligned_cols=72 Identities=15% Similarity=0.038 Sum_probs=40.5
Q ss_pred cceEEEEecCCCCEEEEEeCCCeEEEEEcccCcccc---ceeeeeeecCCcCCEEEEEecCC-EEEEEeCCCcEEEEeCC
Q 009993 317 GNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA---NVLLVATWIPHTGPVNSLAFEFP-WLVSAAGDGKLSLIDVR 392 (520)
Q Consensus 317 ~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~---~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~ 392 (520)
..+..++|+|+|.+.++ .+|.++-.+..+..... ....+-.. +-.. -.++.|+++ .|..+ .||.|+-++..
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~-Gw~~-F~a~~fD~~G~LYav-~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNG-GWNQ-FQFLFFDPNGYLYAV-SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECS-CGGG-CSEEEECTTSCEEEE-ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccc-cccc-ceEEEECCCCCEEEe-CCCEEEEeCCC
Confidence 46779999999987666 67776665554321100 00111000 1111 367888874 44444 67999888754
Q ss_pred c
Q 009993 393 K 393 (520)
Q Consensus 393 ~ 393 (520)
+
T Consensus 116 ~ 116 (236)
T 1tl2_A 116 Q 116 (236)
T ss_dssp C
T ss_pred c
Confidence 3
No 346
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=81.82 E-value=24 Score=30.19 Aligned_cols=177 Identities=11% Similarity=-0.069 Sum_probs=83.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCc------EEEEeCC---CCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCC
Q 009993 154 AKLLFTSGYDSIVRMWHLEDGF------SIASSKP---LGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGS 224 (520)
Q Consensus 154 ~~~l~sgs~dg~v~vwd~~~~~------~~~~~~~---~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~ 224 (520)
...|++...| +|++=...++. ....+-. +...-.++.|++.+.++ .+|.+.-.+..+.....+-
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~---- 76 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWM---- 76 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHH----
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccc----
Confidence 4456666666 55554444332 1111111 33445677798886665 6676554443332111000
Q ss_pred ccccceEEec--cCCCCeEEEEEcCC-EEEEEecCCeEEEEECCCCcEEE------Eee--eccCEEEEe--eCCCEEEE
Q 009993 225 EKQNTQFRLW--EHEGPITSLALDLT-RIYSGSWDMTVRVWDRALLKCLK------VLR--HSDWVYGLA--PHDTTVAS 291 (520)
Q Consensus 225 ~~~~~~~~~~--~h~~~v~~l~~~~~-~l~s~s~dg~v~iwd~~~~~~~~------~~~--~~~~v~~~~--~~~~~l~~ 291 (520)
.....+- +-.. -.++.||++ .|+.. .||.|.-++-.+...-. .+. .=..+..+. |+|.+.++
T Consensus 77 ---~s~t~IG~~Gw~~-F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav 151 (236)
T 1tl2_A 77 ---GRAKKIGNGGWNQ-FQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAV 151 (236)
T ss_dssp ---HHCEEEECSCGGG-CSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEE
T ss_pred ---ccccEeccccccc-ceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEE
Confidence 0011110 1111 356677543 23333 67999888764321111 111 012334444 88888888
Q ss_pred EcCCeEEEEECCCCe------eeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEccc
Q 009993 292 TSGSDVYIWDTNSGC------LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIN 347 (520)
Q Consensus 292 ~~d~~i~iwd~~~~~------~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~ 347 (520)
. |+.++-....++. ....+-...-....-+.|.+++.+.++. +| ++|....
T Consensus 152 ~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~ 208 (236)
T 1tl2_A 152 H-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDYP 208 (236)
T ss_dssp E-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEESC
T ss_pred e-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEecCC
Confidence 8 8876544333221 1111111222234456788988877666 77 4444433
No 347
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=80.91 E-value=31 Score=31.02 Aligned_cols=210 Identities=9% Similarity=-0.049 Sum_probs=112.2
Q ss_pred EEEccCCCEEEEEeCC--------------CeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEe--CCCcEEEEEc
Q 009993 148 VFVLASAKLLFTSGYD--------------SIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGG--TDGFIHCWRA 211 (520)
Q Consensus 148 l~~~~~~~~l~sgs~d--------------g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~--~dg~i~vwd~ 211 (520)
--++++|.+|+-.... ..|+..++..++....... ....++++++.|+-.. .++.-.|+.+
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~---~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~ 134 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD---PCIYASLIGNYIYYLHYDTQTATSLYRI 134 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS---CEEEEEEETTEEEEEEESSSSCEEEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC---CccEEEEeCCEEEEEeecCCCCceEEEE
Confidence 3457888888866542 4677778776653332222 2236677888888765 3444444443
Q ss_pred ccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEec-CCeEEEEECCCCcEEEEeeeccCEEEEeeCCCEEE
Q 009993 212 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSW-DMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVA 290 (520)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~ 290 (520)
.... . ....+..+.. ..+.++++.|+-.+. ...|..-++..+.....+..... ..+.|++..|+
T Consensus 135 ~~dG--------s----~~~~lt~~~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~~~-~~~~P~g~~iy 199 (302)
T 3s25_A 135 RIDG--------E----EKKKIKNHYL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCY-KPVVLDDTNVY 199 (302)
T ss_dssp ETTS--------C----CCEEEESSCC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECSCEE-EEEEEETTEEE
T ss_pred ECCC--------C----CeEEEeCCCc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCCCcc-ceeeecCCEEE
Confidence 2211 0 1122322322 345677877776554 67888888876654444332111 23457888777
Q ss_pred EEc-C--CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC--CCeEEEEEcccCccccceeeeeeecCCcC
Q 009993 291 STS-G--SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE--DGAIHMYEIINDCTEANVLLVATWIPHTG 365 (520)
Q Consensus 291 ~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 365 (520)
-.. + ..|..-++..... ..+.. ..+ ..++|+++.|.-+.. .+.|..-++..... ..+ ..+
T Consensus 200 ~t~~~~~~~I~~~~ldG~~~-~~Lt~---~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r----~~l--~~~--- 264 (302)
T 3s25_A 200 YMDVNRDNAIVHVNINNPNP-VVLTE---ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGF----KEL--AKG--- 264 (302)
T ss_dssp EEEGGGTTEEEEECSSSCCC-EECSC---SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCCC----EEE--EES---
T ss_pred EEEcCCCcEEEEEECCCCCe-EEEeC---CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCcc----EEe--eCC---
Confidence 655 3 3677777765543 33321 223 337788888876533 35566666655421 111 111
Q ss_pred CEEEEEecCCEEEEEe-CCCcEEEEe
Q 009993 366 PVNSLAFEFPWLVSAA-GDGKLSLID 390 (520)
Q Consensus 366 ~v~~l~~~~~~l~s~s-~dg~i~vwd 390 (520)
.+..+....++|+-.. ..+.|..-+
T Consensus 265 ~~~~i~i~~d~Iy~td~~~~~i~~~~ 290 (302)
T 3s25_A 265 EFCNINVTSQYVYFTDFVSNKEYCTS 290 (302)
T ss_dssp CEEEEEECSSEEEEEETTTCCEEEEE
T ss_pred ccceEEEeCCEEEEEECCCCeEEEEE
Confidence 3456666666655554 334444333
No 348
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=80.37 E-value=17 Score=35.13 Aligned_cols=55 Identities=13% Similarity=0.052 Sum_probs=34.9
Q ss_pred ccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec------CCcCCEEEEEecC
Q 009993 316 VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI------PHTGPVNSLAFEF 374 (520)
Q Consensus 316 ~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~~ 374 (520)
-.....|+|.|+|+++++-...+.|++++..++.. ..+..+. ........|+|+|
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~----~~~~~~~~~~~~~~g~~Gllgia~~P 86 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSV----KTVFQVPEIVNDADGQNGLLGFAFHP 86 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE----EEEEECTTCCCCTTSSCSEEEEEECT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE----eEEecCCccccccCCCCceeEEEECC
Confidence 34567999999999777654445788887654421 2222221 1245678999986
No 349
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=79.94 E-value=0.96 Score=32.59 Aligned_cols=63 Identities=17% Similarity=0.349 Sum_probs=33.3
Q ss_pred CCCHHHHHHHccCCChhhhHHHhhhhhhHHHhhcCcchhhhhhhhhcCCCCCCCCCCCCCCCcccHHHhhhhh
Q 009993 66 DLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELIDVL 138 (520)
Q Consensus 66 ~LP~el~~~i~~~L~~~~l~~~s~v~~~~~~~~~~~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~l 138 (520)
.-|.+++.-||...+|..|.++..-|-.+ +-..+.+|+..+.+.|+- . ...+...|+++...+
T Consensus 12 ~~Py~lL~PVLek~tp~QL~~IE~~nP~L--~~dTdeLWk~~c~rdF~~--~------~p~e~esWRelY~rl 74 (97)
T 4hfx_A 12 GVPYSVLEPVLERCTPDQLYRIEEYNHVL--IEETDQLWKVHCHRDFKE--E------RPEEYESWREMYLRL 74 (97)
T ss_dssp --------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CC--S------CCCSSSCHHHHHHHH
T ss_pred CCcHHHHHHHHccCCHHHHHHHHHhCccc--chhhHHHHHHHHHhHCcc--c------CCCCCCCHHHHHHHH
Confidence 36889999999999999999988887633 346679999988888862 1 124456898664433
No 350
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=79.63 E-value=39 Score=31.28 Aligned_cols=184 Identities=14% Similarity=0.098 Sum_probs=0.0
Q ss_pred CCceEEEEecCCCEEEEEe------------CCCcEEEEEcccCcceeeeccCCccccceEEecc-----CCCCeEEEEE
Q 009993 183 LGCTIRAVAADKKLLVAGG------------TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE-----HEGPITSLAL 245 (520)
Q Consensus 183 ~~~~v~~~~~~~~~l~sg~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~ 245 (520)
+...=..+.++|..+++++ .+|.|.++|..+. ........+.+ ..-....|.+
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~----------~~~~~~l~~~g~~~~~~~f~PhGi~~ 119 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEK----------EPAVSELEIIGNTLDISSFNPHGIST 119 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSS----------SCCEEECEEECSSCCGGGCCEEEEEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCC----------CCceEEEEccCCCCCcCceeeeeeEE
Q ss_pred ----cCC--EEEEEec--CCeEEEEECCCCcEEEEee------eccCEEEEe--eCCCEEEEEc----------------
Q 009993 246 ----DLT--RIYSGSW--DMTVRVWDRALLKCLKVLR------HSDWVYGLA--PHDTTVASTS---------------- 293 (520)
Q Consensus 246 ----~~~--~l~s~s~--dg~v~iwd~~~~~~~~~~~------~~~~v~~~~--~~~~~l~~~~---------------- 293 (520)
++. .+++-.. +.+|.+|++........+- .-...+.+. ++|.+.++..
T Consensus 120 ~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~ 199 (355)
T 3sre_A 120 FIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLG 199 (355)
T ss_dssp EECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTT
T ss_pred EECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhcc
Q ss_pred --CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEe-CCCeEEEEEcccCccccceeeeeeecCCcCCEEEE
Q 009993 294 --GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG-EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL 370 (520)
Q Consensus 294 --d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l 370 (520)
.|.|+-+|...-+.+.. .-...+.++|+||++.|+.+. ..+.|..|++............ .+ .+....+
T Consensus 200 ~~~g~vyr~d~~~~~~~~~----~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~---~g~PDGi 271 (355)
T 3sre_A 200 LAWSFVTYYSPNDVRVVAE----GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SF---DTLVDNI 271 (355)
T ss_dssp CCCEEEEEECTTCCEEEEE----EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-EC---SSEEEEE
T ss_pred CCccEEEEEECCeEEEeec----CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eC---CCCCceE
Q ss_pred Ee--c-CCEEEEEeCCC
Q 009993 371 AF--E-FPWLVSAAGDG 384 (520)
Q Consensus 371 ~~--~-~~~l~s~s~dg 384 (520)
+. + +++.+++..++
T Consensus 272 ~vD~e~G~lwva~~~~g 288 (355)
T 3sre_A 272 SVDPVTGDLWVGCHPNG 288 (355)
T ss_dssp EECTTTCCEEEEEESCH
T ss_pred EEeCCCCcEEEEecCCc
No 351
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=76.26 E-value=48 Score=30.54 Aligned_cols=155 Identities=10% Similarity=-0.010 Sum_probs=0.0
Q ss_pred cceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-----CEEEEEeC--------C
Q 009993 317 GNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-----PWLVSAAG--------D 383 (520)
Q Consensus 317 ~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~l~s~s~--------d 383 (520)
.....|+|.|+|+.|+++...|.|++++........-................|+++| ..|..... .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Q ss_pred CcEEEEeCCcccccCCCCCCCceeeeeec--CCCcccccCcceeeEEEEecCCEEEEecC-------------CCeEEEE
Q 009993 384 GKLSLIDVRKLLRSGRPTSGKRVSRVIEV--EPPQRMLHGFECNLLSVDIGADRIVCGGE-------------EGIVRIW 448 (520)
Q Consensus 384 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~l~sg~~-------------Dg~v~iw 448 (520)
..|..|++... .........+ ..+......|...-+.+.+++.+.++.+. .|.|.-+
T Consensus 98 ~~v~r~~~~~~--------~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri 169 (353)
T 2g8s_A 98 TAVGYGRLSDD--------LSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRL 169 (353)
T ss_dssp EEEEEEEECTT--------SSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEE
T ss_pred eEEEEEEECCC--------CCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEE
Q ss_pred eCCchHhHHHHhhhhc-------------ccccchhhhhccceeeecc-CCCcccc
Q 009993 449 NFSQAFEIERRARALR-------------GIRLENRMRRRKLQTEMSS-KGGRTDQ 490 (520)
Q Consensus 449 d~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~s~-~g~~~~~ 490 (520)
+... . ..+....--|++..++|.| +|...++
T Consensus 170 ~~dG-----------~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 170 TDQG-----------EIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp ETTS-----------CCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE
T ss_pred CCCC-----------CCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE
No 352
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=75.48 E-value=53 Score=30.69 Aligned_cols=247 Identities=12% Similarity=0.023 Sum_probs=132.0
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEECCCC--------cE------EEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEE
Q 009993 145 VLTVFVLASAKLLFTSGYDSIVRMWHLEDG--------FS------IASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWR 210 (520)
Q Consensus 145 V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~--------~~------~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd 210 (520)
|..++. .....+.-..||.|..|-.... .. +..+......+.+++......+.-..||.|..|-
T Consensus 55 i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG 132 (389)
T 3kci_A 55 PVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWG 132 (389)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEE
T ss_pred eEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEe
Confidence 444443 2445555567888888864321 00 1111222334456666667777778899999997
Q ss_pred cccCcceeeeccCCccccceEEecc-CCCCeEEEEEcCCEEEEEecCCeEEEEECCCC-c----------EEEEee--ec
Q 009993 211 AVEVLPHLFDISGSEKQNTQFRLWE-HEGPITSLALDLTRIYSGSWDMTVRVWDRALL-K----------CLKVLR--HS 276 (520)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~-~----------~~~~~~--~~ 276 (520)
.......-.. ..........+.. ....|..++......+....||.|..|-.... + ....+. ..
T Consensus 133 ~n~~GqLG~g--~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~ 210 (389)
T 3kci_A 133 EAEDGKLGHG--NRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQG 210 (389)
T ss_dssp CCGGGTTCSS--SCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTT
T ss_pred CCCCCcCCCC--CCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCC
Confidence 5432110000 0000011111111 12368888887777777788999999965321 0 111111 23
Q ss_pred cCEEEEeeC---CCEEEEEcCCeEEEEECCCC-----------eeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEE
Q 009993 277 DWVYGLAPH---DTTVASTSGSDVYIWDTNSG-----------CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHM 342 (520)
Q Consensus 277 ~~v~~~~~~---~~~l~~~~d~~i~iwd~~~~-----------~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~i 342 (520)
..|..++.. ...++...++.|+.|-.... .....+.......|..++.. ....+.-..||.|+.
T Consensus 211 ~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~ 288 (389)
T 3kci_A 211 HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYT 288 (389)
T ss_dssp SCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred CeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEE
Confidence 456777643 34555666999999965431 11112211112245555553 234444568899999
Q ss_pred EEcccCccc------cceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCccccc
Q 009993 343 YEIINDCTE------ANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRS 397 (520)
Q Consensus 343 wd~~~~~~~------~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~ 397 (520)
|=....... ....+..........|..|+....+.+....||.|+.|-.....+.
T Consensus 289 wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqL 349 (389)
T 3kci_A 289 WGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQL 349 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTT
T ss_pred EeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcC
Confidence 976432110 0011111111122468888887777788899999999988764333
No 353
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=75.21 E-value=51 Score=30.34 Aligned_cols=116 Identities=12% Similarity=0.054 Sum_probs=63.5
Q ss_pred ccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeee----ecCCcCCEEEEEecC-----CEEEEE---eCC
Q 009993 316 VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT----WIPHTGPVNSLAFEF-----PWLVSA---AGD 383 (520)
Q Consensus 316 ~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~----~~~h~~~v~~l~~~~-----~~l~s~---s~d 383 (520)
-...+.|+|.|+|.++++--..|.|++++..++.. ..+.. ..........|+++| ..|+.. ..+
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~----~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK----TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE----EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE----eeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 45678999999999877776589999987654421 12221 123355789999987 344432 234
Q ss_pred CcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEec
Q 009993 384 GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGG 440 (520)
Q Consensus 384 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~ 440 (520)
+.|.-|.+........ .......-+..+.. -..|...-+.+.+++.+.++.+
T Consensus 107 ~~v~R~~~~~~~~~~~-~~~~~~~i~~~~p~----~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 107 NRIVRMLYDEKKPSGE-QLGAPDTVFRGIPK----GVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEEEEEEBCTTSCTTC-CBCCCEEEEEEECC----CSSCCCCCEEECTTSCEEEECB
T ss_pred CEEEEEEeCCCCcccc-cCCCcEEEEEcCCC----CCCccCccccCCCCCCEEEEEC
Confidence 5566665543210000 00000001111111 2456667778888888666654
No 354
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=70.81 E-value=65 Score=29.60 Aligned_cols=194 Identities=16% Similarity=0.101 Sum_probs=93.2
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC-----CEEEEEecC-----
Q 009993 187 IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL-----TRIYSGSWD----- 256 (520)
Q Consensus 187 v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~l~s~s~d----- 256 (520)
-.++.+++++++ +..+|.|.+++ ++....+. ..............|++++ ..|+.+...
T Consensus 35 ~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~--------~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~ 103 (352)
T 2ism_A 35 ALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYA--------ELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGL 103 (352)
T ss_dssp EEEECTTSCEEE-EETTTEEEEEE--TTEEEEEE--------ECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSS
T ss_pred EEEEcCCCeEEE-EeCCCeEEEEE--CCCccEee--------cceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCC
Confidence 345568888544 45679998887 33211100 0001112245678899954 366655442
Q ss_pred -CeEEEEECCCCcE-----E-EEee------eccCEEEEeeCCCEEEEEcC--------------CeEEEEECCCC----
Q 009993 257 -MTVRVWDRALLKC-----L-KVLR------HSDWVYGLAPHDTTVASTSG--------------SDVYIWDTNSG---- 305 (520)
Q Consensus 257 -g~v~iwd~~~~~~-----~-~~~~------~~~~v~~~~~~~~~l~~~~d--------------~~i~iwd~~~~---- 305 (520)
+.|..++...+.. + ..+. |...-..+.+++.+.++.++ +.|.-+|....
T Consensus 104 ~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~ 183 (352)
T 2ism_A 104 RNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG 183 (352)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred ccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence 5788888764321 1 1121 22223344578876666432 45666665431
Q ss_pred --------eeeEEeecccccceEEEEecC-CCCEEEEEeCCCeE------EEEEcccCcc------------ccceeeee
Q 009993 306 --------CLLTVVNGAHVGNTKSLARSH-TGDFLFTGGEDGAI------HMYEIINDCT------------EANVLLVA 358 (520)
Q Consensus 306 --------~~~~~~~~~~~~~i~~l~~s~-~~~~l~tg~~dg~i------~iwd~~~~~~------------~~~~~~~~ 358 (520)
.....+..++ .....++|+| ++.++++-.....+ .|.-+..+.. .....++.
T Consensus 184 npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 262 (352)
T 2ism_A 184 NPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY 262 (352)
T ss_dssp CTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred CcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence 1111222223 2356789999 66655543332221 2333332210 00012333
Q ss_pred eecCCcCCEEEEEec-CCEEEEEeCCCcEEEEeCCc
Q 009993 359 TWIPHTGPVNSLAFE-FPWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 359 ~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~ 393 (520)
.+..| .....++|. +..+++.-..+.|...++..
T Consensus 263 ~~~~~-~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~ 297 (352)
T 2ism_A 263 FWPQG-FPPGNLAFFRGDLYVAGLRGQALLRLVLEG 297 (352)
T ss_dssp ECTTC-CCEEEEEEETTEEEEEETTTTEEEEEEEEE
T ss_pred ecCCC-CCCcceEEECCEEEEEECCCCEEEEEEECC
Confidence 44333 345677774 34445444566777777654
No 355
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=70.54 E-value=17 Score=39.03 Aligned_cols=38 Identities=11% Similarity=0.281 Sum_probs=33.3
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 009993 143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS 180 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~ 180 (520)
..|.+++..++..+++|-+.|+++|+|++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 35777888888899999999999999999999988764
No 356
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=66.34 E-value=89 Score=30.09 Aligned_cols=60 Identities=17% Similarity=0.117 Sum_probs=35.3
Q ss_pred ccceEEEEecCCCC-EEEEEeCCCeEEEEEcccCccccceeeeee-ec-----CCcCCEEEEEecCC
Q 009993 316 VGNTKSLARSHTGD-FLFTGGEDGAIHMYEIINDCTEANVLLVAT-WI-----PHTGPVNSLAFEFP 375 (520)
Q Consensus 316 ~~~i~~l~~s~~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~-~~-----~h~~~v~~l~~~~~ 375 (520)
-...+.|+|.|+|. .|+++...|.|++++.........+..+.. +. ........|+++|+
T Consensus 13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 34567999999996 455566889999997543211111111110 11 12456789999884
No 357
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=64.75 E-value=1e+02 Score=33.00 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=29.6
Q ss_pred CeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee
Q 009993 239 PITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR 274 (520)
Q Consensus 239 ~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 274 (520)
.+.+++. +..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 4555555 55789999999999999999999988764
No 358
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=62.74 E-value=1e+02 Score=28.81 Aligned_cols=135 Identities=13% Similarity=0.132 Sum_probs=78.2
Q ss_pred CeEEEEECCCC--cEEEEeee-------ccCEEEEeeC---------CCEEEEEc--CCeEEEEECCCCeeeEEeec---
Q 009993 257 MTVRVWDRALL--KCLKVLRH-------SDWVYGLAPH---------DTTVASTS--GSDVYIWDTNSGCLLTVVNG--- 313 (520)
Q Consensus 257 g~v~iwd~~~~--~~~~~~~~-------~~~v~~~~~~---------~~~l~~~~--d~~i~iwd~~~~~~~~~~~~--- 313 (520)
-.|.+||+.+. +.++.+.. ...+..+..+ +.+++.+. +..|.++|+.+++..+....
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 36788899988 88887762 2345555422 34555544 57899999999877665520
Q ss_pred ----------cc----ccceEEEEecCC----CCEEEEEeCCCeEEEEEcccC-----ccccceeeeeeecCCcCCEEEE
Q 009993 314 ----------AH----VGNTKSLARSHT----GDFLFTGGEDGAIHMYEIIND-----CTEANVLLVATWIPHTGPVNSL 370 (520)
Q Consensus 314 ----------~~----~~~i~~l~~s~~----~~~l~tg~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~h~~~v~~l 370 (520)
+. ...+..++++|+ ++.|.-....+ -++|.+.+. .....++.+... +....-..+
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~k-g~~s~~~~~ 280 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNR-GKYNDAIAL 280 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEEC-CTTCCEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeec-CCCCCcceE
Confidence 00 136788899987 67776665554 234544332 111111222111 111233445
Q ss_pred Eec-C--CEEEEEeCCCcEEEEeCCc
Q 009993 371 AFE-F--PWLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 371 ~~~-~--~~l~s~s~dg~i~vwd~~~ 393 (520)
+++ . ..+++--....|..|+..+
T Consensus 281 ~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 281 AYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 665 2 3555556778899999875
No 359
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=62.63 E-value=13 Score=37.96 Aligned_cols=37 Identities=8% Similarity=0.178 Sum_probs=32.5
Q ss_pred CCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee
Q 009993 238 GPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR 274 (520)
Q Consensus 238 ~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 274 (520)
..|.++.++..++++-+.|+++|+||+.+++++.+..
T Consensus 222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 222 SVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp CEEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 4577777788999999999999999999999888765
No 360
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=61.91 E-value=89 Score=27.97 Aligned_cols=207 Identities=13% Similarity=0.013 Sum_probs=110.9
Q ss_pred cCCCEEEEEe--CCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCC--------------CcEEEEEcccCc
Q 009993 152 ASAKLLFTSG--YDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTD--------------GFIHCWRAVEVL 215 (520)
Q Consensus 152 ~~~~~l~sgs--~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~d--------------g~i~vwd~~~~~ 215 (520)
+++.+|+-.. .++.|...+.+... ...+.. ..+..+.+++..|+-.... ..|+..++..+.
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~--~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~ 99 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN--DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHG 99 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE--EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCC
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC--CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCc
Confidence 4566666553 24556666654333 222322 2345667888888776543 245555554332
Q ss_pred ceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEe----cCCeEEEEECCCCcEEEEeeeccCEEEEeeCCCEEEE
Q 009993 216 PHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS----WDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVAS 291 (520)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s----~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 291 (520)
...+. ......++.+++.|+-.. .+..|..-++..........+.. ..+.++++.|+-
T Consensus 100 --------------~~~l~--~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~--~~~~~~g~~iy~ 161 (302)
T 3s25_A 100 --------------STVLD--PDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL--FTCNTSDRYFYY 161 (302)
T ss_dssp --------------CEEEE--CSCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC--CCSEEETTEEEE
T ss_pred --------------ceEee--cCCccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc--eEeeEECCEEEE
Confidence 11111 223345666888877665 33456666665443333222322 345678887776
Q ss_pred Ec--CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCC--CeEEEEEcccCccccceeeeeeecCCcCCE
Q 009993 292 TS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED--GAIHMYEIINDCTEANVLLVATWIPHTGPV 367 (520)
Q Consensus 292 ~~--d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v 367 (520)
.+ ...|...++..+.....+. + ... ..+.|++++|+-...+ ..|..-++.... ...+. ...+
T Consensus 162 t~~g~~~Iy~~~l~g~~~~~l~~-~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-------~~~Lt--~~~~ 227 (302)
T 3s25_A 162 NNPKNGQLYRYDTASQSEALFYD-C---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-------PVVLT--EANI 227 (302)
T ss_dssp ECTTTCCEEEEETTTTEEEEEEC-S---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-------CEECS--CSCE
T ss_pred EeCCCceEEEEECCCCCEEEEeC-C---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-------eEEEe--CCCc
Confidence 66 4778898988776544432 1 222 2456888888765543 345555555442 12222 2234
Q ss_pred EEEEecCCEEEEEeC--CCcEEEEeCCc
Q 009993 368 NSLAFEFPWLVSAAG--DGKLSLIDVRK 393 (520)
Q Consensus 368 ~~l~~~~~~l~s~s~--dg~i~vwd~~~ 393 (520)
..++..+.+|+-++. .+.|..-++..
T Consensus 228 ~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 228 EHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 556667777766533 34555555543
No 361
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=58.92 E-value=1.3e+02 Score=28.92 Aligned_cols=263 Identities=16% Similarity=0.149 Sum_probs=139.6
Q ss_pred CceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCC---------------------ccccceEEecc-------
Q 009993 184 GCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGS---------------------EKQNTQFRLWE------- 235 (520)
Q Consensus 184 ~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~---------------------~~~~~~~~~~~------- 235 (520)
...|..++..+...+.-..||.|..|-.......-...... ........+..
T Consensus 66 ~~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~ 145 (473)
T 3of7_A 66 EAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLA 145 (473)
T ss_dssp TTCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHH
T ss_pred CCCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCccc
Confidence 34677787777777777888999999654321110000000 00001111111
Q ss_pred CCCCeEEEEEcCCEEEEEecCCeEEEEECC---CCcE------------EEEee--eccCEEEEeeCCCEE-EEEcCCeE
Q 009993 236 HEGPITSLALDLTRIYSGSWDMTVRVWDRA---LLKC------------LKVLR--HSDWVYGLAPHDTTV-ASTSGSDV 297 (520)
Q Consensus 236 h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~---~~~~------------~~~~~--~~~~v~~~~~~~~~l-~~~~d~~i 297 (520)
....|..++......+.-..||.|..|-.. .++. ...+. ....|..++...... +...+|.|
T Consensus 146 ~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v 225 (473)
T 3of7_A 146 EGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMV 225 (473)
T ss_dssp TTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCE
T ss_pred CCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeE
Confidence 236788888877777777889999999741 1110 01111 223488888555544 44459999
Q ss_pred EEEECCCCeee---------------EEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcccc----------
Q 009993 298 YIWDTNSGCLL---------------TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA---------- 352 (520)
Q Consensus 298 ~iwd~~~~~~~---------------~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~---------- 352 (520)
+.|-....-.+ ..+ ....|..++.. ....++-..+|.|+.|-........
T Consensus 226 ~~wG~n~~GqLG~~~~~~~~~~~~~p~~~---~~~~v~~Ia~G--~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~ 300 (473)
T 3of7_A 226 FAWGNGQQNQLGRKVMERFRLKTLDPRPF---GLRHVKYIASG--ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGAL 300 (473)
T ss_dssp EEEECCTTSTTSSCCCGGGTTTTCSCEEC---SCCSEEEEEEC--SSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCE
T ss_pred EEEeCCCCCCCCCCccccccccccCceec---CCcceEEEecC--CCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCce
Confidence 99976432110 001 11345555543 3445555678999999654321100
Q ss_pred ceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCC---------CceeeeeecCCCcccccCcc
Q 009993 353 NVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSG---------KRVSRVIEVEPPQRMLHGFE 423 (520)
Q Consensus 353 ~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 423 (520)
...+..........|..|+....+-+.-..||.|+.|-.....+....... ...... ...+. .+.+.
T Consensus 301 ~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~--~~~P~-~v~~~- 376 (473)
T 3of7_A 301 VTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARA--VPLPT-KLNNV- 376 (473)
T ss_dssp EEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEE--EEEEE-ECCSS-
T ss_pred eeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceee--eccCc-ccCCC-
Confidence 001111111123468888887777777789999999987654332211000 000000 00000 11111
Q ss_pred eeeEEEEecCCEEEEecCCCeEEEEeCCchHh
Q 009993 424 CNLLSVDIGADRIVCGGEEGIVRIWNFSQAFE 455 (520)
Q Consensus 424 ~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~ 455 (520)
..|..++......+.-..||.|+.|-....-+
T Consensus 377 ~~v~~Ia~G~~hs~al~~~G~vy~wG~n~~Gq 408 (473)
T 3of7_A 377 PKFKSVAAGSHHSVAVAQNGIAYSWGFGETYA 408 (473)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECCTTCT
T ss_pred CceEEEEeCCCeEEEEeCCCcEEEeeCCCCCC
Confidence 15777777777666668899999998765433
No 362
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=58.33 E-value=98 Score=27.29 Aligned_cols=125 Identities=13% Similarity=0.094 Sum_probs=69.0
Q ss_pred ccceEEEEecC-CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe-c-CCEEEEEeCCCcEEEEeCC
Q 009993 316 VGNTKSLARSH-TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF-E-FPWLVSAAGDGKLSLIDVR 392 (520)
Q Consensus 316 ~~~i~~l~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~-~~~l~s~s~dg~i~vwd~~ 392 (520)
...|..+.... +..+++..+.+|.++-..+..-...........+... +.+..+.. + .+.++..+.+|.+..++..
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkeg-D~l~~~~~~~~~~~ill~T~~G~~~r~~~~ 145 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEG-DEVVSIASSVDETHILLFTKKGRVARFSVR 145 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTT-CCEEEEEECCSSCEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCC-CEEEEEEEeCCCCEEEEEECCCEEEEEEhh
Confidence 44555553321 4678999999999999987654210111122223332 34444433 3 3689999999999988876
Q ss_pred cccccCCCCCCCceeeeeecCCCcccccCcceeeEEEE--ecCCEEEEecCCCeEEEEeCCc
Q 009993 393 KLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVD--IGADRIVCGGEEGIVRIWNFSQ 452 (520)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~Dg~v~iwd~~~ 452 (520)
......+...+... . ....+ ..+.++. .++..++..+..|.++...+..
T Consensus 146 eip~~gR~a~Gv~~---i------~L~~~--d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 146 EVPPSTPGARGVQG---I------KLEKN--DETSGLRIWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp GSCBCCTTCCCEEC---C------CCCTT--CCEEEEEEESSCSEEEEEETTSCEEEEEGGG
T ss_pred hCCCcCCCCCCEEE---E------ccCCC--CEEEEEEEeCCCCEEEEEeCCCcEEEeEHHH
Confidence 54332222222111 1 11112 2222222 2344888889999999888754
No 363
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=57.36 E-value=1.2e+02 Score=30.09 Aligned_cols=87 Identities=14% Similarity=0.092 Sum_probs=67.7
Q ss_pred EEEEecCCeEEEEECCCCcEEEEee-e-c----------------------------cCEEEEe---eCCCEEEEEc--C
Q 009993 250 IYSGSWDMTVRVWDRALLKCLKVLR-H-S----------------------------DWVYGLA---PHDTTVASTS--G 294 (520)
Q Consensus 250 l~s~s~dg~v~iwd~~~~~~~~~~~-~-~----------------------------~~v~~~~---~~~~~l~~~~--d 294 (520)
+.||+..|.|+++-+.+++.+..+. . . .+-.+.. .+|++++... +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 7889999999999999998888765 0 0 0112222 6788999888 5
Q ss_pred CeEEEEECCCCeeeEEeecccccceEEEEec--CCCCEEEEEeC
Q 009993 295 SDVYIWDTNSGCLLTVVNGAHVGNTKSLARS--HTGDFLFTGGE 336 (520)
Q Consensus 295 ~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s--~~~~~l~tg~~ 336 (520)
..|-..+++..++-..+.......+..+.|- |+..+++++++
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e 196 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAE 196 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEEC
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecce
Confidence 7899999999988777776677788888886 78889998876
No 364
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=54.89 E-value=44 Score=33.04 Aligned_cols=66 Identities=5% Similarity=-0.117 Sum_probs=48.3
Q ss_pred EEeeCCCEEEEEc--CCeEEEEECCCCee-------------eEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEc
Q 009993 281 GLAPHDTTVASTS--GSDVYIWDTNSGCL-------------LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI 345 (520)
Q Consensus 281 ~~~~~~~~l~~~~--d~~i~iwd~~~~~~-------------~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~ 345 (520)
.++|+|+++++++ +.++.++|.+.... ..... -.-.....+|.++|....+-.-|..|..|++
T Consensus 329 ~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni 406 (638)
T 3sbq_A 329 NTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNM 406 (638)
T ss_dssp EECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--CCSCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred eeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--CCCcccEEEECCCCceEeeeeecceEEEEec
Confidence 3458999999988 78999999884211 12222 2345678899999966666778999999999
Q ss_pred ccC
Q 009993 346 IND 348 (520)
Q Consensus 346 ~~~ 348 (520)
...
T Consensus 407 ~~a 409 (638)
T 3sbq_A 407 EEA 409 (638)
T ss_dssp HHH
T ss_pred cHH
Confidence 764
No 365
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=54.83 E-value=1.3e+02 Score=27.60 Aligned_cols=97 Identities=18% Similarity=0.036 Sum_probs=54.3
Q ss_pred CCeEEEEEc-CCEEEEEecCCeEEEEECCCCc-EEEEee----eccCEEEEe--eC---CCEEEEEc-C--------CeE
Q 009993 238 GPITSLALD-LTRIYSGSWDMTVRVWDRALLK-CLKVLR----HSDWVYGLA--PH---DTTVASTS-G--------SDV 297 (520)
Q Consensus 238 ~~v~~l~~~-~~~l~s~s~dg~v~iwd~~~~~-~~~~~~----~~~~v~~~~--~~---~~~l~~~~-d--------~~i 297 (520)
.....++++ ...|+.+..+|.|+++|. +++ .+..+. .......+. ++ +..|+++. . +.|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 456788882 345777777899999973 454 222111 123466666 43 34554443 3 568
Q ss_pred EEEECCCC-------eee-EEeecccccceEEEEecCCCCEEEEEe
Q 009993 298 YIWDTNSG-------CLL-TVVNGAHVGNTKSLARSHTGDFLFTGG 335 (520)
Q Consensus 298 ~iwd~~~~-------~~~-~~~~~~~~~~i~~l~~s~~~~~l~tg~ 335 (520)
..|+.... +.+ ..+..........++|.|+|.+.++-+
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 88887654 111 112211112346799999998777643
No 366
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=54.14 E-value=21 Score=36.37 Aligned_cols=36 Identities=11% Similarity=0.213 Sum_probs=29.7
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 009993 143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS 180 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~ 180 (520)
..|.++.+ +..+++|-+.|.++|+|++.++.++.+.
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence 35776655 4789999999999999999999887664
No 367
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=50.35 E-value=1.5e+02 Score=32.40 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=25.9
Q ss_pred cCCEEEEEecCCeEEEEECCCCcEEEEee
Q 009993 246 DLTRIYSGSWDMTVRVWDRALLKCLKVLR 274 (520)
Q Consensus 246 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 274 (520)
+..++++-+.|+++|+|++.+++++.+..
T Consensus 248 ~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 248 TYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred CccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 56889999999999999999999988765
No 368
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=50.07 E-value=1.5e+02 Score=27.07 Aligned_cols=51 Identities=10% Similarity=0.089 Sum_probs=32.5
Q ss_pred CCCEEEEEc-CCeEEEEECCCC-eee--EEeecccccceEEEEecCCCCEEEEEe
Q 009993 285 HDTTVASTS-GSDVYIWDTNSG-CLL--TVVNGAHVGNTKSLARSHTGDFLFTGG 335 (520)
Q Consensus 285 ~~~~l~~~~-d~~i~iwd~~~~-~~~--~~~~~~~~~~i~~l~~s~~~~~l~tg~ 335 (520)
++.++++.. .+.|...++... ... ..+..+....+..+++.|||.+.++..
T Consensus 276 ~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 276 RGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp TTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 455666555 678888888753 222 233222245788999999997666654
No 369
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=48.32 E-value=1.9e+02 Score=27.70 Aligned_cols=210 Identities=15% Similarity=0.084 Sum_probs=113.0
Q ss_pred ceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeec-cCC-ccccceEEecc-CCCCeEEEEEcCCEEEEEecCCeEEE
Q 009993 185 CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDI-SGS-EKQNTQFRLWE-HEGPITSLALDLTRIYSGSWDMTVRV 261 (520)
Q Consensus 185 ~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~~~-~~~~~~~~~~~-h~~~v~~l~~~~~~l~s~s~dg~v~i 261 (520)
..|..++......+.-..||.|..|-......-..-. ... ........+.. ....|..++......+.-..+|.|..
T Consensus 148 ~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~ 227 (473)
T 3of7_A 148 HKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFA 227 (473)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEE
T ss_pred CcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEE
Confidence 5677777777777777889999999752110000000 000 00011111111 12358888887777777888999999
Q ss_pred EECCCCcEE--------------EEeeeccCEEEEeeCCCE-EEEEcCCeEEEEECCCC-e-----------e---eEEe
Q 009993 262 WDRALLKCL--------------KVLRHSDWVYGLAPHDTT-VASTSGSDVYIWDTNSG-C-----------L---LTVV 311 (520)
Q Consensus 262 wd~~~~~~~--------------~~~~~~~~v~~~~~~~~~-l~~~~d~~i~iwd~~~~-~-----------~---~~~~ 311 (520)
|-....-.+ ...-....|..++..... ++...+|.|+.|-.... + . ...+
T Consensus 228 wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v 307 (473)
T 3of7_A 228 WGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRL 307 (473)
T ss_dssp EECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEEC
T ss_pred EeCCCCCCCCCCccccccccccCceecCCcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccc
Confidence 964321100 000012457777755444 44455899999965421 1 0 1111
Q ss_pred ecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcccc------------------ceeeeeeecCCcCCEEEEEec
Q 009993 312 NGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA------------------NVLLVATWIPHTGPVNSLAFE 373 (520)
Q Consensus 312 ~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~------------------~~~~~~~~~~h~~~v~~l~~~ 373 (520)
.......|..++.. ....+.-..||.|+.|=........ ..............|..|+..
T Consensus 308 ~~~~~~~i~~ia~G--~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~v~~Ia~G 385 (473)
T 3of7_A 308 ALPDNVVIRSIAAG--EHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAG 385 (473)
T ss_dssp CCCTTCCEEEEEEC--SSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSCCEEEEEEC
T ss_pred cccCCccEEEEEeC--CCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCCceEEEEeC
Confidence 11112346565543 2333444678888888754321110 000011111112268888887
Q ss_pred CCEEEEEeCCCcEEEEeCCcccc
Q 009993 374 FPWLVSAAGDGKLSLIDVRKLLR 396 (520)
Q Consensus 374 ~~~l~s~s~dg~i~vwd~~~~~~ 396 (520)
..+.++-..||.|+.|-.....+
T Consensus 386 ~~hs~al~~~G~vy~wG~n~~Gq 408 (473)
T 3of7_A 386 SHHSVAVAQNGIAYSWGFGETYA 408 (473)
T ss_dssp SSEEEEEETTSCEEEEECCTTCT
T ss_pred CCeEEEEeCCCcEEEeeCCCCCC
Confidence 78778888999999998775433
No 370
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=47.36 E-value=14 Score=40.60 Aligned_cols=37 Identities=11% Similarity=0.280 Sum_probs=30.7
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 009993 144 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS 180 (520)
Q Consensus 144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~ 180 (520)
.|.+++..++..+++|-+.|+++|||++.++.++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 4455566678889999999999999999999888764
No 371
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=46.85 E-value=1.6e+02 Score=26.41 Aligned_cols=198 Identities=11% Similarity=0.017 Sum_probs=0.0
Q ss_pred cCCEEEEEecCCeEEEEECCCCcEEEEe---------eeccCEEEEe---eCCCEEEEEcCCeEEEEECCCCeeeEEeec
Q 009993 246 DLTRIYSGSWDMTVRVWDRALLKCLKVL---------RHSDWVYGLA---PHDTTVASTSGSDVYIWDTNSGCLLTVVNG 313 (520)
Q Consensus 246 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~---------~~~~~v~~~~---~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~ 313 (520)
+..++++.+.+|.|+--.+...+....- ...+.+..+. .+..+++.+..|.++-+....-.....-..
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~ 86 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASK 86 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC------
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCC
Q ss_pred ccc----------cceEEEEecC---CCCEEEEEeCCCeEEEEEcccCcccc-ceeeeeeecCCcCCEEEEEecC-CEEE
Q 009993 314 AHV----------GNTKSLARSH---TGDFLFTGGEDGAIHMYEIINDCTEA-NVLLVATWIPHTGPVNSLAFEF-PWLV 378 (520)
Q Consensus 314 ~~~----------~~i~~l~~s~---~~~~l~tg~~dg~i~iwd~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~~-~~l~ 378 (520)
+-. ..|.++...+ +..+++..+..|.++...+..-.... .......+.....-|.....++ ..++
T Consensus 87 G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~~i~ 166 (312)
T 1suu_A 87 GQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKVI 166 (312)
T ss_dssp -CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTCEEE
T ss_pred CcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCCEEE
Q ss_pred EEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCc
Q 009993 379 SAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQ 452 (520)
Q Consensus 379 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~ 452 (520)
..+.+|.+..+.........+...+ ........+.......+..+++.+++.+..|..+..++..
T Consensus 167 l~T~~G~~~r~~~~ev~~~gR~~~G---------v~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 167 CLSKKGSAFIFNSRDVRLTNRGTQG---------VCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEETTSEEEEEEGGGSCBCCTTBCC---------EECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEeCCCcEEEEEHHHccccCCCCCC---------eEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
No 372
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=40.24 E-value=2.1e+02 Score=25.87 Aligned_cols=193 Identities=13% Similarity=0.133 Sum_probs=100.8
Q ss_pred CEEEEEecCCeEEEEECCCC-------cEEEE--eeeccCEEEEe---eCCCEEEEEcCCeEEEEE---CCC------Ce
Q 009993 248 TRIYSGSWDMTVRVWDRALL-------KCLKV--LRHSDWVYGLA---PHDTTVASTSGSDVYIWD---TNS------GC 306 (520)
Q Consensus 248 ~~l~s~s~dg~v~iwd~~~~-------~~~~~--~~~~~~v~~~~---~~~~~l~~~~d~~i~iwd---~~~------~~ 306 (520)
..+++.+.+|.|+--.+.+. +-+.. +...+.+..+. .+..+++..+.|.++-.. +.. |.
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~ 83 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ 83 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence 35677788888886653321 11111 22344454443 445556666677765544 332 23
Q ss_pred eeEEe-ecccccceEEEEecC---CCCEEEEEeCCCeEEEEEcccCccccc-eeeeeeecCCcCCEEEEEe-c-CCEEEE
Q 009993 307 LLTVV-NGAHVGNTKSLARSH---TGDFLFTGGEDGAIHMYEIINDCTEAN-VLLVATWIPHTGPVNSLAF-E-FPWLVS 379 (520)
Q Consensus 307 ~~~~~-~~~~~~~i~~l~~s~---~~~~l~tg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~h~~~v~~l~~-~-~~~l~s 379 (520)
++..+ .......|.++..-+ +..+++..+.+|.++--.+..-..... ......+... +.+..+.. + .+.|+.
T Consensus 84 ~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~-D~lv~~~~~~~~d~ill 162 (327)
T 3uc1_A 84 HVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDN-DELVGAVLCSAGDDLLL 162 (327)
T ss_dssp EHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTT-CCEEEEEEECTTCEEEE
T ss_pred EHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCC-CEEEEEEEecCCCEEEE
Confidence 22111 112344566554433 578999999999999988766422111 1122233333 33443333 3 368999
Q ss_pred EeCCCcEEEEeCC--cccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEe--cCCEEEEecCCCeEEEEeCCc
Q 009993 380 AAGDGKLSLIDVR--KLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--GADRIVCGGEEGIVRIWNFSQ 452 (520)
Q Consensus 380 ~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~~Dg~v~iwd~~~ 452 (520)
.+..|.+..+... ..........+.. ... +. ....|.++.. .+..++..+..|.++.-.+..
T Consensus 163 ~T~~G~~~rf~~~~~eip~~gr~a~Gv~---~i~-------L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 163 VSANGQSIRFSATDEALRPMGRATSGVQ---GMR-------FN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp EETTSEEEEEECCTTTSCCCCTTSBCEE---SSC-------CC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EECCCeEEEEECcccccCcCCcCCCCee---eec-------CC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 9999999988887 3322221111111 111 11 1122333332 234888889999998877653
No 373
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=39.97 E-value=92 Score=30.88 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=29.2
Q ss_pred eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEE
Q 009993 296 DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTG 334 (520)
Q Consensus 296 ~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg 334 (520)
.|..++..+++....+.......++.++|+||++.|+++
T Consensus 510 ~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 510 QMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred eEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 577788888876655543335678999999999988765
No 374
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=39.83 E-value=2.1e+02 Score=25.83 Aligned_cols=238 Identities=11% Similarity=0.047 Sum_probs=123.7
Q ss_pred CCEEEEEeCCCeEEEEECCCC-------cEEE--EeCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcccCcceeeecc
Q 009993 154 AKLLFTSGYDSIVRMWHLEDG-------FSIA--SSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS 222 (520)
Q Consensus 154 ~~~l~sgs~dg~v~vwd~~~~-------~~~~--~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 222 (520)
...+++-+.+|.|+--.+.+- .-+. .++. ...+..+ ......|+.-+..|.++-....+-.......
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke-~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~- 80 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQ-DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTA- 80 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCG-GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSS-
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCC-CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccC-
Confidence 346778888888886553211 1111 1121 2223222 2555666666777877655432211000000
Q ss_pred CCccccceEEeccCCCCeEEEEE-----cCCEEEEEecCCeEEEEECCCCcE-------EEEeeeccCEEEEe---eCCC
Q 009993 223 GSEKQNTQFRLWEHEGPITSLAL-----DLTRIYSGSWDMTVRVWDRALLKC-------LKVLRHSDWVYGLA---PHDT 287 (520)
Q Consensus 223 ~~~~~~~~~~~~~h~~~v~~l~~-----~~~~l~s~s~dg~v~iwd~~~~~~-------~~~~~~~~~v~~~~---~~~~ 287 (520)
...+......+. ....|.++.. +..+++..+.+|.++--.+..... ...+...+.+..+. .+..
T Consensus 81 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ 159 (327)
T 3uc1_A 81 RGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDD 159 (327)
T ss_dssp CCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCE
T ss_pred CCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCE
Confidence 000000011121 2345555544 257899999999999987654221 11222345555443 3444
Q ss_pred EEEEEcCCeEEEEECC--CCee-------eEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcccc---cee
Q 009993 288 TVASTSGSDVYIWDTN--SGCL-------LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA---NVL 355 (520)
Q Consensus 288 ~l~~~~d~~i~iwd~~--~~~~-------~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~---~~~ 355 (520)
+++.+..|.+..+... .-.. +..+.......|.++...+++..++..+..|.++.-.+..-.... ...
T Consensus 160 ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~ 239 (327)
T 3uc1_A 160 LLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGV 239 (327)
T ss_dssp EEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred EEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcE
Confidence 5555668988888776 2111 111111234567777766667789999999999988875542210 111
Q ss_pred eeeeecCCcCCEEEEEe-c-CCEEEEEeCCCcEEEEeCCcc
Q 009993 356 LVATWIPHTGPVNSLAF-E-FPWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 356 ~~~~~~~h~~~v~~l~~-~-~~~l~s~s~dg~i~vwd~~~~ 394 (520)
....+..-.+.+..+.. + ...++..+.+|.+..++...-
T Consensus 240 ~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i 280 (327)
T 3uc1_A 240 LTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQV 280 (327)
T ss_dssp ESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGS
T ss_pred EEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhc
Confidence 11122221233444433 3 357788888888888887654
No 375
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=38.34 E-value=2.3e+02 Score=25.85 Aligned_cols=156 Identities=15% Similarity=0.117 Sum_probs=75.5
Q ss_pred CCCeEEEEEcC-----CEEEEE---ecCCeEEEEECCCC----------cEEE-Eee----eccCEEEEeeCCCEEEEEc
Q 009993 237 EGPITSLALDL-----TRIYSG---SWDMTVRVWDRALL----------KCLK-VLR----HSDWVYGLAPHDTTVASTS 293 (520)
Q Consensus 237 ~~~v~~l~~~~-----~~l~s~---s~dg~v~iwd~~~~----------~~~~-~~~----~~~~v~~~~~~~~~l~~~~ 293 (520)
......|++++ ..|+.. ..++.|.-|....+ +.+. .+. |...-..+.+++.+.++.+
T Consensus 79 ~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 79 EGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp TBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred CCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 45678888853 445443 23445655655431 1111 121 4344445558887777643
Q ss_pred C--------------CeEEEEECCCCe-------eeEEeecccccceEEEEecCCCCEEEEE-eCCCeEEEEEcccCcc-
Q 009993 294 G--------------SDVYIWDTNSGC-------LLTVVNGAHVGNTKSLARSHTGDFLFTG-GEDGAIHMYEIINDCT- 350 (520)
Q Consensus 294 d--------------~~i~iwd~~~~~-------~~~~~~~~~~~~i~~l~~s~~~~~l~tg-~~dg~i~iwd~~~~~~- 350 (520)
| |.|.-++....- ....+..+|. ....++|+|+|.+.++= +.|+.=.|.-+..+..
T Consensus 159 d~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~ny 237 (347)
T 3das_A 159 ESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNY 237 (347)
T ss_dssp CTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBC
T ss_pred CCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEe
Confidence 2 445555554220 1122333443 35589999988766553 2233223333332211
Q ss_pred -----------ccceeeeeeecCCcCCEEEEEecCC-EEEEEeCCCcEEEEeCCc
Q 009993 351 -----------EANVLLVATWIPHTGPVNSLAFEFP-WLVSAAGDGKLSLIDVRK 393 (520)
Q Consensus 351 -----------~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~~ 393 (520)
.....++..+..+......++|... .++..-..+.|....+..
T Consensus 238 GwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~ 292 (347)
T 3das_A 238 GWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAEGSVWMAGLRGERLWRIPLKG 292 (347)
T ss_dssp CTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEETTEEEEEESTTCSEEEEEEET
T ss_pred cCCcccCCCCCccccCCcEecCCCCCCCcceEEEcCceeeccccCCEEEEEEecC
Confidence 0111234444444346677888554 444444455665555543
No 376
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=31.98 E-value=1.4e+02 Score=29.85 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=37.4
Q ss_pred EeeCCCEEEEEcC-------------CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEE
Q 009993 282 LAPHDTTVASTSG-------------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTG 334 (520)
Q Consensus 282 ~~~~~~~l~~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg 334 (520)
+++.|+++++-.. ..+.+.+..+++..+.+.......++.++|+||++.|++.
T Consensus 483 fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 483 FDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp ECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred ECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4467775555431 2366777788877766665567789999999999887764
No 377
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=31.87 E-value=2.8e+02 Score=24.75 Aligned_cols=241 Identities=12% Similarity=0.058 Sum_probs=124.9
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCcEEE---------EeCCCCceEEEE-ecCCCEEEEEeCCCcEEEEEcccCcceeeec
Q 009993 152 ASAKLLFTSGYDSIVRMWHLEDGFSIA---------SSKPLGCTIRAV-AADKKLLVAGGTDGFIHCWRAVEVLPHLFDI 221 (520)
Q Consensus 152 ~~~~~l~sgs~dg~v~vwd~~~~~~~~---------~~~~~~~~v~~~-~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 221 (520)
|+...+++.+.+|.|+--.+.+-.... .++....-+..+ ......|+..+..|.+.-....+-...-...
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 456678899999999877665422111 122222222222 2556677777888887666553311000000
Q ss_pred cCCccccceEEeccCCCCeEEEEE-----cCCEEEEEecCCeEEEEECCCCc-----EEEE--eeeccCEEEEe---eCC
Q 009993 222 SGSEKQNTQFRLWEHEGPITSLAL-----DLTRIYSGSWDMTVRVWDRALLK-----CLKV--LRHSDWVYGLA---PHD 286 (520)
Q Consensus 222 ~~~~~~~~~~~~~~h~~~v~~l~~-----~~~~l~s~s~dg~v~iwd~~~~~-----~~~~--~~~~~~v~~~~---~~~ 286 (520)
. ..+......+. ....|.++.. ++.+++..+.+|.++--.+.... -+.. +...+.+..+. .+.
T Consensus 81 ~-G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 81 R-GRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGED 158 (307)
T ss_dssp C-CEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTC
T ss_pred C-CeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCC
Confidence 0 00000111122 3344555543 34679999999999998764221 1111 22335555543 334
Q ss_pred CEEEEEcCCeEEEEECCCCe-------eeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccc---cceee
Q 009993 287 TTVASTSGSDVYIWDTNSGC-------LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE---ANVLL 356 (520)
Q Consensus 287 ~~l~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~---~~~~~ 356 (520)
..++.+.+|.+..++...-. -+..+.......|.++...+++..+++.+..|.++-.++..-... .....
T Consensus 159 ~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~ 238 (307)
T 1zi0_A 159 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI 238 (307)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEE
T ss_pred EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEE
Confidence 45555568888887764311 111122223456777766556677888999999988877443211 11111
Q ss_pred eeeecCCcCCEEEEEe-c-CCEEEEEeCCCcEEEEeCCcc
Q 009993 357 VATWIPHTGPVNSLAF-E-FPWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 357 ~~~~~~h~~~v~~l~~-~-~~~l~s~s~dg~i~vwd~~~~ 394 (520)
...+....+.+-.+.. . ...++..+.+|.+.-.++..-
T Consensus 239 ~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~i 278 (307)
T 1zi0_A 239 SIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI 278 (307)
T ss_dssp SSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGGS
T ss_pred eeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecccc
Confidence 2223333345544444 3 356778888888887777653
No 378
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=29.94 E-value=2.8e+02 Score=24.24 Aligned_cols=155 Identities=14% Similarity=0.038 Sum_probs=90.7
Q ss_pred CCCeEEEEE---cCCEEEEEecCCeEEEEECCCCc------EEEEeeeccCEEEEe---eCCCEEEEEcCCeEEEEECCC
Q 009993 237 EGPITSLAL---DLTRIYSGSWDMTVRVWDRALLK------CLKVLRHSDWVYGLA---PHDTTVASTSGSDVYIWDTNS 304 (520)
Q Consensus 237 ~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~------~~~~~~~~~~v~~~~---~~~~~l~~~~d~~i~iwd~~~ 304 (520)
...|..+.. +..+++..+.+|.++-..+.... ....+...+.+..+. .+...++.+..|.++.++...
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~e 146 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVRE 146 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGG
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhh
Confidence 444555433 34689999999999998865432 111222445555544 333455555588888887532
Q ss_pred ---------CeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccc-eeeeeeecCCcCCEEEEEe-c
Q 009993 305 ---------GCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN-VLLVATWIPHTGPVNSLAF-E 373 (520)
Q Consensus 305 ---------~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~h~~~v~~l~~-~ 373 (520)
|.....+ .....|..+...+++..++..+..|.++...+..-..... .+-+..+ ...+.+..+.. +
T Consensus 147 ip~~gR~a~Gv~~i~L--~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~ 223 (276)
T 3no0_A 147 VPPSTPGARGVQGIKL--EKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIK 223 (276)
T ss_dssp SCBCCTTCCCEECCCC--CTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEES
T ss_pred CCCcCCCCCCEEEEcc--CCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeC
Confidence 1122122 2345666666556677888999999999988755422111 0112222 22344554433 3
Q ss_pred C-CEEEEEeCCCcEEE--EeCCcc
Q 009993 374 F-PWLVSAAGDGKLSL--IDVRKL 394 (520)
Q Consensus 374 ~-~~l~s~s~dg~i~v--wd~~~~ 394 (520)
+ +.++..+.+|.+.. ++...-
T Consensus 224 ~~~~i~~~t~~G~~ir~~~~~~~i 247 (276)
T 3no0_A 224 EEVELLITTKNGKAFYDKINQKDI 247 (276)
T ss_dssp SEEEEEEEETTSCEEEEEEEGGGS
T ss_pred CCCEEEEEcCCCeEEEeeeCHHHC
Confidence 3 57888888999888 887654
No 379
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=28.65 E-value=3.6e+02 Score=25.06 Aligned_cols=246 Identities=11% Similarity=-0.007 Sum_probs=133.9
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEE------------EEeCCCCceEEEEecCCCEEEEEeCCCcEEEEE
Q 009993 143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI------------ASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWR 210 (520)
Q Consensus 143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~------------~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd 210 (520)
..|..++.. +...+.-..||.|..|-....-.+ .........|..++......+.-..||.|..|-
T Consensus 59 ~~i~~va~G--~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l~~~i~~va~G~~hs~alt~~G~v~~wG 136 (413)
T 1a12_A 59 EDVVQAEAG--GMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWG 136 (413)
T ss_dssp SCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CCeEEEEeC--CCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecCCCcEEEEecCCCeEEEEcCCCcEEEee
Confidence 456666653 345555567899999965431100 000011236777877777777778899999997
Q ss_pred c--ccCcceeeeccCCcc-ccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCC-cE-----------------
Q 009993 211 A--VEVLPHLFDISGSEK-QNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALL-KC----------------- 269 (520)
Q Consensus 211 ~--~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~-~~----------------- 269 (520)
. ...... -...... ......+ .....|..++......+.-..||.|..|-.... ++
T Consensus 137 ~~~n~~Gql--G~~~~~~~~~~P~~v-~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~ 213 (413)
T 1a12_A 137 SFRDNNGVI--GLLEPMKKSMVPVQV-QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLE 213 (413)
T ss_dssp CEEETTEEE--ESSBBTBCEEEEEEE-CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHH
T ss_pred CCcCCCCcc--CcCCccccccCCEEe-cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCcccccccccccccc
Confidence 5 211100 0000000 0001111 234578888887777777788999999965321 10
Q ss_pred ----EEEee-------eccCEEEEee-CCCEEEEEcCCeEEEEECCCCe-----------eeEEeecccc--cceEEEEe
Q 009993 270 ----LKVLR-------HSDWVYGLAP-HDTTVASTSGSDVYIWDTNSGC-----------LLTVVNGAHV--GNTKSLAR 324 (520)
Q Consensus 270 ----~~~~~-------~~~~v~~~~~-~~~~l~~~~d~~i~iwd~~~~~-----------~~~~~~~~~~--~~i~~l~~ 324 (520)
...+. ....|..++. ....++...+|.|+.|-..... ....+..-.. ..|..++.
T Consensus 214 ~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~ 293 (413)
T 1a12_A 214 RLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSG 293 (413)
T ss_dssp HHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEE
T ss_pred ccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEec
Confidence 00011 1245777774 3445555569999999765311 1111111011 23656554
Q ss_pred cCCCCEEEEEeCCCeEEEEEcccCcccc-----ceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCccc
Q 009993 325 SHTGDFLFTGGEDGAIHMYEIINDCTEA-----NVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLL 395 (520)
Q Consensus 325 s~~~~~l~tg~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~ 395 (520)
. ....+.-..||.|+.|-........ ..............|..|+....+.+.-..||.|+.|-.....
T Consensus 294 G--~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~~v~~v~~G~~hs~alt~~G~v~~wG~n~~g 367 (413)
T 1a12_A 294 G--QHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNY 367 (413)
T ss_dssp C--SSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEECSSEEEEEETTSCEEEEECCTTS
T ss_pred c--cceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccCceeEEEECcceEEEEeCCCCEEEecCCCCC
Confidence 3 3344555678999999754321100 0000111111223788888877888888899999999876543
No 380
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=26.37 E-value=3.9e+02 Score=24.66 Aligned_cols=151 Identities=11% Similarity=0.044 Sum_probs=85.3
Q ss_pred cCCEEEEEecCCeEEEEECCC---------CcEEEEeeeccCEEEEe---eCCCEEEEEcCCeEEEEEC---CC------
Q 009993 246 DLTRIYSGSWDMTVRVWDRAL---------LKCLKVLRHSDWVYGLA---PHDTTVASTSGSDVYIWDT---NS------ 304 (520)
Q Consensus 246 ~~~~l~s~s~dg~v~iwd~~~---------~~~~~~~~~~~~v~~~~---~~~~~l~~~~d~~i~iwd~---~~------ 304 (520)
+...+++.+.+|.|+--.+.. +..-..+...+.+..+. .+..+++..+.|.++-+.. ..
T Consensus 6 ~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~ 85 (370)
T 3l6v_A 6 PEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNAR 85 (370)
T ss_dssp CCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSC
T ss_pred CCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccC
Confidence 456788899999998765422 12223334556665544 3444555666777666543 21
Q ss_pred CeeeEEe-ecccccceEEEEecC---CCCEEEEEeCCCeEEEEEcccCcccc-ceeeeeeecCCcCCEEEEEe-c-CCEE
Q 009993 305 GCLLTVV-NGAHVGNTKSLARSH---TGDFLFTGGEDGAIHMYEIINDCTEA-NVLLVATWIPHTGPVNSLAF-E-FPWL 377 (520)
Q Consensus 305 ~~~~~~~-~~~~~~~i~~l~~s~---~~~~l~tg~~dg~i~iwd~~~~~~~~-~~~~~~~~~~h~~~v~~l~~-~-~~~l 377 (520)
|.++..+ .......|.++.... ++.+|+.++..|.++.-.+..-.... .......+.. .+.+..+.. + .+.+
T Consensus 86 G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~~~i 164 (370)
T 3l6v_A 86 GRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGDRDV 164 (370)
T ss_dssp CEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSCCEE
T ss_pred CcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCCceE
Confidence 2222211 112344566554432 45689999999999998876542211 1112223333 334444433 3 3688
Q ss_pred EEEeCCCcEEEEeCCccccc
Q 009993 378 VSAAGDGKLSLIDVRKLLRS 397 (520)
Q Consensus 378 ~s~s~dg~i~vwd~~~~~~~ 397 (520)
+..+.+|.+..++...-...
T Consensus 165 ~l~T~~G~~irf~~~~v~~~ 184 (370)
T 3l6v_A 165 LLFASNGKTVRFGESTVRSM 184 (370)
T ss_dssp EEEETTSEEEEEEGGGSCBC
T ss_pred EEEeCCCeEEEEEccccCcc
Confidence 88999999998987654333
No 381
>2lh0_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; NMR {Saccharomyces cerevisiae}
Probab=25.30 E-value=39 Score=22.44 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=25.1
Q ss_pred cccCCCHHHHHHHccCC--ChhhhHHHhhhhhh
Q 009993 63 TITDLPPALISEILNCL--DPKELGIVSCVSPI 93 (520)
Q Consensus 63 ~~~~LP~el~~~i~~~L--~~~~l~~~s~v~~~ 93 (520)
||..||.+|-.+|..-. +|.++.....++..
T Consensus 8 wL~~LP~~Lq~kV~aIV~~~PsSl~VF~~Ly~y 40 (70)
T 2lh0_A 8 FLDELPESLSRKIGTVVRVLPSSLEIFEELYKY 40 (70)
T ss_dssp GGGGSCHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 79999999999998764 77788777777665
No 382
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=24.57 E-value=63 Score=19.28 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=18.1
Q ss_pred cccCcccccccCCCHHHHHHHccCC
Q 009993 55 VLSNLHRSTITDLPPALISEILNCL 79 (520)
Q Consensus 55 ~~~~~~~~~~~~LP~el~~~i~~~L 79 (520)
+++..-.+-+..||.||..+|++--
T Consensus 12 lP~~VD~eVF~~LP~dIQ~Ells~~ 36 (48)
T 2kwv_A 12 LPEGVDQEVFKQLPADIQEEILSGK 36 (48)
T ss_dssp SCTTCCGGGTTTSCHHHHHHHTTCC
T ss_pred CCCCCCHHHHHHCcHHHHHHHHhcc
Confidence 3444444558899999999998754
No 383
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=21.81 E-value=5.3e+02 Score=24.60 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=22.3
Q ss_pred cEEEEEEccCCC-EEEEEeCCCeEEEEECC
Q 009993 144 AVLTVFVLASAK-LLFTSGYDSIVRMWHLE 172 (520)
Q Consensus 144 ~V~~l~~~~~~~-~l~sgs~dg~v~vwd~~ 172 (520)
.-+.|+|.|+|. .|+.+...|.|++++..
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 447899999986 45556788999999754
No 384
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=21.40 E-value=4.8e+02 Score=24.00 Aligned_cols=243 Identities=12% Similarity=0.033 Sum_probs=125.5
Q ss_pred EccCCCEEEEEeCCCeEEEEECCC---------CcEEEEeCCCCceEEEE-ecCCCEEEEEeCCCcEEEEEcccCcceee
Q 009993 150 VLASAKLLFTSGYDSIVRMWHLED---------GFSIASSKPLGCTIRAV-AADKKLLVAGGTDGFIHCWRAVEVLPHLF 219 (520)
Q Consensus 150 ~~~~~~~l~sgs~dg~v~vwd~~~---------~~~~~~~~~~~~~v~~~-~~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 219 (520)
+-|+..++++.+.+|.|+--.+.+ |..-..++....-+..+ ......|+..+..|.+.-+....-...-.
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 347788999999999999765421 22223344333222222 24556677778888877665432110000
Q ss_pred eccCCccccceEEeccCCCCeEEEEE-----cCCEEEEEecCCeEEEEECCCCcE-----EE--EeeeccCEEEEe---e
Q 009993 220 DISGSEKQNTQFRLWEHEGPITSLAL-----DLTRIYSGSWDMTVRVWDRALLKC-----LK--VLRHSDWVYGLA---P 284 (520)
Q Consensus 220 ~~~~~~~~~~~~~~~~h~~~v~~l~~-----~~~~l~s~s~dg~v~iwd~~~~~~-----~~--~~~~~~~v~~~~---~ 284 (520)
.. ..........+. ....|.++.. ++.+++.++..|.++--.+..... +. .+...+.+..+. .
T Consensus 83 ~a-~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~ 160 (370)
T 3l6v_A 83 NA-RGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDG 160 (370)
T ss_dssp TS-CCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECS
T ss_pred cc-CCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCC
Confidence 00 000001111222 2345555543 246899999999999987643221 11 222344444443 3
Q ss_pred CCCEEEEEcCCeEEEEECCCCe-------eeEEeecccccceEEEEecC-------------------------------
Q 009993 285 HDTTVASTSGSDVYIWDTNSGC-------LLTVVNGAHVGNTKSLARSH------------------------------- 326 (520)
Q Consensus 285 ~~~~l~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~i~~l~~s~------------------------------- 326 (520)
+...++.+..|.+..++...-. -+.-+.......|.++...+
T Consensus 161 ~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~ 240 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDV 240 (370)
T ss_dssp CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-----------------------------
T ss_pred CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccccccccccccc
Confidence 3345555558887777654211 11112112334555554443
Q ss_pred ----CCCEEEEEeCCCeEEEEEcccCccccc---eeeeeeecCCcCCEEEEEe-c-CCEEEEEeCCCcEEEEeCCcc
Q 009993 327 ----TGDFLFTGGEDGAIHMYEIINDCTEAN---VLLVATWIPHTGPVNSLAF-E-FPWLVSAAGDGKLSLIDVRKL 394 (520)
Q Consensus 327 ----~~~~l~tg~~dg~i~iwd~~~~~~~~~---~~~~~~~~~h~~~v~~l~~-~-~~~l~s~s~dg~i~vwd~~~~ 394 (520)
++..+++.+..|..+...+..-..... ......+....+.+..+.+ . ...++..+..|.+.-..+..-
T Consensus 241 ~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~~i 317 (370)
T 3l6v_A 241 ADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGSEI 317 (370)
T ss_dssp ------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGGGS
T ss_pred ccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHhhC
Confidence 446788999999999888764422110 0111122223344554433 3 357777788888777776653
Done!