Query 009994
Match_columns 520
No_of_seqs 392 out of 3243
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 19:47:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009994.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009994hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1298 Squalene monooxygenase 100.0 1.1E-93 2.4E-98 678.8 45.0 506 5-517 3-509 (509)
2 PLN02985 squalene monooxygenas 100.0 9.9E-79 2.1E-83 639.9 53.3 470 51-520 40-512 (514)
3 PTZ00367 squalene epoxidase; P 100.0 4.5E-67 9.7E-72 553.4 46.9 440 53-506 32-537 (567)
4 PF08491 SE: Squalene epoxidas 100.0 6.6E-50 1.4E-54 375.7 28.2 273 205-478 1-276 (276)
5 PRK06126 hypothetical protein; 100.0 9.5E-48 2.1E-52 412.5 33.7 408 51-473 4-478 (545)
6 COG0654 UbiH 2-polyprenyl-6-me 100.0 1.9E-46 4.2E-51 385.3 34.1 364 54-432 2-372 (387)
7 PRK08013 oxidoreductase; Provi 100.0 5.1E-46 1.1E-50 384.2 31.0 365 54-432 3-379 (400)
8 PRK08850 2-octaprenyl-6-methox 100.0 1.6E-45 3.4E-50 381.5 32.0 378 54-445 4-392 (405)
9 PRK08132 FAD-dependent oxidore 100.0 2.2E-45 4.7E-50 393.9 33.1 403 52-472 21-461 (547)
10 PRK06183 mhpA 3-(3-hydroxyphen 100.0 1.4E-45 3.1E-50 394.3 31.6 404 52-471 8-445 (538)
11 TIGR01989 COQ6 Ubiquinone bios 100.0 2E-44 4.3E-49 376.0 32.9 371 55-430 1-428 (437)
12 PRK08244 hypothetical protein; 100.0 1.2E-44 2.6E-49 383.8 31.7 394 54-471 2-426 (493)
13 PRK06184 hypothetical protein; 100.0 1.6E-44 3.5E-49 383.5 29.8 395 53-471 2-421 (502)
14 PRK05714 2-octaprenyl-3-methyl 100.0 5.5E-44 1.2E-48 370.2 30.4 376 54-444 2-394 (405)
15 PRK06617 2-octaprenyl-6-methox 100.0 3E-43 6.6E-48 360.3 35.3 349 55-432 2-360 (374)
16 PRK07364 2-octaprenyl-6-methox 100.0 2.2E-43 4.7E-48 367.1 33.9 369 51-431 15-390 (415)
17 PRK08849 2-octaprenyl-3-methyl 100.0 5.8E-43 1.3E-47 359.6 34.9 359 54-433 3-372 (384)
18 PRK06185 hypothetical protein; 100.0 8E-43 1.7E-47 361.9 35.2 376 51-434 3-383 (407)
19 PRK07045 putative monooxygenas 100.0 1.8E-42 4E-47 356.8 36.6 359 52-424 3-372 (388)
20 PRK08773 2-octaprenyl-3-methyl 100.0 2.7E-43 5.9E-48 363.4 30.0 365 52-431 4-378 (392)
21 PRK08294 phenol 2-monooxygenas 100.0 1.2E-42 2.6E-47 375.0 35.8 349 52-412 30-415 (634)
22 PRK06834 hypothetical protein; 100.0 1.2E-42 2.6E-47 365.5 34.6 348 54-430 3-356 (488)
23 TIGR01988 Ubi-OHases Ubiquinon 100.0 3.3E-42 7.1E-47 354.7 31.6 360 56-429 1-370 (385)
24 PRK09126 hypothetical protein; 100.0 1.1E-42 2.3E-47 359.2 27.9 365 53-431 2-376 (392)
25 PRK07190 hypothetical protein; 100.0 7.1E-42 1.5E-46 359.2 32.6 338 52-410 3-348 (487)
26 PRK08020 ubiF 2-octaprenyl-3-m 100.0 1.1E-41 2.4E-46 351.5 33.0 365 52-432 3-378 (391)
27 PRK07494 2-octaprenyl-6-methox 100.0 3.8E-42 8.2E-47 354.6 29.0 363 50-432 3-374 (388)
28 TIGR01984 UbiH 2-polyprenyl-6- 100.0 5.6E-42 1.2E-46 352.6 29.6 357 56-430 1-368 (382)
29 PRK07333 2-octaprenyl-6-methox 100.0 1.7E-41 3.6E-46 351.7 32.1 375 55-445 2-390 (403)
30 PRK08243 4-hydroxybenzoate 3-m 100.0 9.8E-41 2.1E-45 344.1 34.9 361 54-429 2-372 (392)
31 PRK06996 hypothetical protein; 100.0 8.7E-41 1.9E-45 345.0 33.1 358 50-430 7-380 (398)
32 PRK06753 hypothetical protein; 100.0 4.3E-40 9.3E-45 337.5 36.2 351 55-428 1-356 (373)
33 PRK07588 hypothetical protein; 100.0 3.3E-40 7.2E-45 340.3 34.9 357 55-429 1-368 (391)
34 PRK07608 ubiquinone biosynthes 100.0 4.4E-40 9.6E-45 339.2 33.1 363 52-430 3-374 (388)
35 PRK06847 hypothetical protein; 100.0 1.4E-39 3E-44 334.0 36.6 359 54-428 4-372 (375)
36 PRK05732 2-octaprenyl-6-methox 100.0 2.7E-40 6E-45 341.6 30.7 363 53-430 2-377 (395)
37 PF01494 FAD_binding_3: FAD bi 100.0 3.9E-41 8.5E-46 342.2 22.2 338 54-401 1-355 (356)
38 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 2.7E-39 5.9E-44 332.5 35.6 358 54-428 2-371 (390)
39 PRK06475 salicylate hydroxylas 100.0 5.1E-39 1.1E-43 332.2 35.6 354 55-426 3-375 (400)
40 PRK05868 hypothetical protein; 100.0 2.7E-38 5.8E-43 322.9 33.6 350 55-423 2-365 (372)
41 PRK07538 hypothetical protein; 100.0 4.2E-38 9.1E-43 326.7 34.3 335 55-404 1-361 (413)
42 PRK08163 salicylate hydroxylas 100.0 6.3E-38 1.4E-42 324.1 34.6 353 53-425 3-370 (396)
43 TIGR03219 salicylate_mono sali 100.0 2.6E-37 5.6E-42 321.0 31.6 342 55-412 1-376 (414)
44 PRK07236 hypothetical protein; 100.0 1E-36 2.2E-41 313.7 33.5 332 52-412 4-378 (386)
45 PLN02927 antheraxanthin epoxid 100.0 7.8E-36 1.7E-40 317.0 35.7 348 51-409 78-446 (668)
46 KOG2614 Kynurenine 3-monooxyge 100.0 7E-34 1.5E-38 276.8 20.8 306 54-372 2-326 (420)
47 PLN00093 geranylgeranyl diphos 100.0 2.7E-31 5.8E-36 275.9 33.9 342 50-419 35-393 (450)
48 TIGR02023 BchP-ChlP geranylger 100.0 3.3E-30 7.1E-35 265.3 35.8 324 55-412 1-338 (388)
49 TIGR02028 ChlP geranylgeranyl 100.0 3.8E-30 8.2E-35 264.9 31.4 340 55-422 1-357 (398)
50 TIGR02032 GG-red-SF geranylger 100.0 1.8E-29 3.9E-34 250.0 28.6 284 55-368 1-295 (295)
51 PRK08255 salicylyl-CoA 5-hydro 100.0 1.4E-29 3E-34 279.7 24.2 323 55-412 1-342 (765)
52 COG0644 FixC Dehydrogenases (f 100.0 6.9E-28 1.5E-32 248.3 32.5 316 53-396 2-326 (396)
53 PRK11445 putative oxidoreducta 100.0 1.9E-28 4.1E-33 248.6 26.5 306 55-396 2-318 (351)
54 KOG3855 Monooxygenase involved 100.0 3.1E-28 6.8E-33 235.2 21.0 368 52-423 34-458 (481)
55 PRK10015 oxidoreductase; Provi 99.9 9.7E-25 2.1E-29 226.5 31.3 337 53-410 4-372 (429)
56 TIGR01790 carotene-cycl lycope 99.9 1.6E-24 3.5E-29 223.4 32.0 306 56-397 1-321 (388)
57 PF04820 Trp_halogenase: Trypt 99.9 1.6E-24 3.4E-29 225.6 23.4 336 56-421 1-397 (454)
58 PRK10157 putative oxidoreducta 99.9 1.1E-23 2.4E-28 218.9 29.2 319 53-394 4-355 (428)
59 PLN02697 lycopene epsilon cycl 99.9 1.6E-22 3.4E-27 212.4 33.6 313 52-400 106-445 (529)
60 PLN02463 lycopene beta cyclase 99.9 1.6E-21 3.6E-26 201.8 32.9 290 51-372 25-332 (447)
61 TIGR01789 lycopene_cycl lycope 99.9 4.5E-20 9.7E-25 187.8 30.4 296 56-401 1-313 (370)
62 PF05834 Lycopene_cycl: Lycope 99.8 2.3E-18 4.9E-23 176.1 29.7 277 56-370 1-290 (374)
63 PRK04176 ribulose-1,5-biphosph 99.6 2E-14 4.3E-19 138.6 14.2 144 51-225 22-181 (257)
64 TIGR00292 thiazole biosynthesi 99.5 1.2E-13 2.7E-18 132.6 15.2 142 52-224 19-177 (254)
65 PRK06481 fumarate reductase fl 99.5 1.9E-12 4.1E-17 137.6 18.7 167 52-222 59-256 (506)
66 PF01946 Thi4: Thi4 family; PD 99.5 1.2E-12 2.5E-17 118.7 14.5 139 52-221 15-169 (230)
67 COG1635 THI4 Ribulose 1,5-bisp 99.4 2.5E-12 5.3E-17 115.6 14.1 141 52-223 28-184 (262)
68 KOG2415 Electron transfer flav 99.4 1.2E-10 2.5E-15 113.8 23.0 303 52-371 74-421 (621)
69 COG0578 GlpA Glycerol-3-phosph 99.4 5.7E-11 1.2E-15 122.9 21.8 214 52-269 10-282 (532)
70 PRK12266 glpD glycerol-3-phosp 99.4 2E-10 4.3E-15 122.2 25.0 168 52-221 4-221 (508)
71 TIGR01377 soxA_mon sarcosine o 99.3 5.6E-10 1.2E-14 114.8 26.2 166 55-227 1-211 (380)
72 PRK13369 glycerol-3-phosphate 99.3 1.9E-10 4.1E-15 122.3 22.9 168 52-221 4-220 (502)
73 PRK05192 tRNA uridine 5-carbox 99.3 2.6E-11 5.7E-16 128.0 16.0 149 53-218 3-158 (618)
74 PF01134 GIDA: Glucose inhibit 99.3 3.3E-11 7.2E-16 120.8 15.5 147 56-217 1-152 (392)
75 COG2081 Predicted flavoprotein 99.3 2.5E-11 5.5E-16 119.3 14.2 141 53-218 2-168 (408)
76 PRK12409 D-amino acid dehydrog 99.3 1.4E-09 3E-14 113.1 25.7 69 154-224 195-266 (410)
77 PLN02661 Putative thiazole syn 99.3 9.1E-11 2E-15 116.0 15.6 138 51-218 89-245 (357)
78 PLN02464 glycerol-3-phosphate 99.3 7.4E-10 1.6E-14 120.3 24.2 73 152-225 228-305 (627)
79 PF01266 DAO: FAD dependent ox 99.3 1.8E-10 3.8E-15 117.0 17.7 164 56-225 1-212 (358)
80 PF12831 FAD_oxidored: FAD dep 99.2 4.1E-12 8.9E-17 132.3 3.4 153 56-225 1-157 (428)
81 PF03486 HI0933_like: HI0933-l 99.2 1.6E-10 3.6E-15 118.3 14.8 144 55-218 1-167 (409)
82 PRK07121 hypothetical protein; 99.2 3.4E-10 7.3E-15 120.3 17.3 63 157-221 178-243 (492)
83 PRK11101 glpA sn-glycerol-3-ph 99.2 2.7E-10 5.8E-15 122.2 16.4 73 152-225 145-220 (546)
84 PRK01747 mnmC bifunctional tRN 99.2 3E-09 6.5E-14 117.1 24.5 60 152-218 404-464 (662)
85 PRK00711 D-amino acid dehydrog 99.2 4E-09 8.6E-14 109.9 23.8 60 153-218 198-258 (416)
86 PF00890 FAD_binding_2: FAD bi 99.2 1.7E-10 3.6E-15 120.2 13.1 63 155-218 140-204 (417)
87 PRK11259 solA N-methyltryptoph 99.2 4.2E-09 9E-14 108.2 23.2 60 152-218 145-205 (376)
88 TIGR01373 soxB sarcosine oxida 99.2 4.1E-09 8.9E-14 109.5 23.2 112 152-272 179-293 (407)
89 TIGR01813 flavo_cyto_c flavocy 99.2 2.6E-10 5.6E-15 119.6 14.0 164 56-220 1-195 (439)
90 PRK11728 hydroxyglutarate oxid 99.2 2.7E-09 5.8E-14 110.3 20.4 69 151-226 144-214 (393)
91 PRK08274 tricarballylate dehyd 99.1 7.6E-10 1.6E-14 117.0 15.7 67 156-223 131-198 (466)
92 PRK09231 fumarate reductase fl 99.1 4.5E-10 9.8E-15 121.2 13.9 64 157-220 134-199 (582)
93 TIGR00551 nadB L-aspartate oxi 99.1 1E-09 2.2E-14 116.4 16.2 65 156-221 128-193 (488)
94 KOG0042 Glycerol-3-phosphate d 99.1 2.1E-09 4.5E-14 108.5 16.4 174 49-224 62-295 (680)
95 PRK12845 3-ketosteroid-delta-1 99.1 2.7E-09 5.8E-14 114.5 18.0 63 158-222 219-283 (564)
96 PRK06069 sdhA succinate dehydr 99.1 2E-09 4.3E-14 116.4 17.1 65 157-221 138-204 (577)
97 TIGR01320 mal_quin_oxido malat 99.1 1.9E-09 4E-14 113.6 16.3 77 150-227 172-251 (483)
98 PRK05257 malate:quinone oxidor 99.1 1.4E-09 3E-14 114.7 15.1 77 150-226 177-256 (494)
99 PRK06452 sdhA succinate dehydr 99.1 8.3E-10 1.8E-14 118.9 13.4 62 157-219 137-200 (566)
100 KOG2820 FAD-dependent oxidored 99.1 5E-09 1.1E-13 100.3 16.9 173 52-227 5-224 (399)
101 PRK12834 putative FAD-binding 99.1 7.2E-10 1.6E-14 119.2 12.8 66 158-223 150-233 (549)
102 PRK07843 3-ketosteroid-delta-1 99.1 1.7E-09 3.7E-14 116.3 15.7 63 158-222 210-274 (557)
103 TIGR01176 fum_red_Fp fumarate 99.1 1.8E-09 4E-14 116.3 15.5 63 157-219 133-197 (580)
104 TIGR00136 gidA glucose-inhibit 99.1 2.3E-09 5E-14 113.3 15.4 152 55-223 1-160 (617)
105 PRK07573 sdhA succinate dehydr 99.1 1.4E-09 3E-14 118.4 13.9 60 159-219 173-234 (640)
106 TIGR01812 sdhA_frdA_Gneg succi 99.1 1.5E-09 3.2E-14 117.4 13.9 64 157-221 130-195 (566)
107 PRK12844 3-ketosteroid-delta-1 99.0 7.1E-09 1.5E-13 111.5 18.4 63 157-221 209-273 (557)
108 PRK13339 malate:quinone oxidor 99.0 5E-09 1.1E-13 109.8 16.6 78 149-227 177-258 (497)
109 PRK06854 adenylylsulfate reduc 99.0 1.1E-09 2.3E-14 118.8 12.0 158 52-218 9-196 (608)
110 PRK05945 sdhA succinate dehydr 99.0 2.2E-09 4.9E-14 115.9 14.2 62 157-219 136-199 (575)
111 PRK12837 3-ketosteroid-delta-1 99.0 2.6E-09 5.7E-14 113.8 14.5 63 157-220 174-238 (513)
112 PTZ00306 NADH-dependent fumara 99.0 2.3E-09 5.1E-14 124.1 14.8 173 47-219 402-622 (1167)
113 PRK06263 sdhA succinate dehydr 99.0 3.9E-09 8.4E-14 113.4 15.5 61 157-218 135-198 (543)
114 PRK09077 L-aspartate oxidase; 99.0 6.3E-09 1.4E-13 111.5 17.0 65 157-221 139-211 (536)
115 COG0579 Predicted dehydrogenas 99.0 8.6E-09 1.9E-13 104.8 17.0 171 53-227 2-222 (429)
116 PRK07804 L-aspartate oxidase; 99.0 4.9E-09 1.1E-13 112.4 15.8 165 51-221 13-214 (541)
117 PRK06175 L-aspartate oxidase; 99.0 3.3E-09 7.1E-14 110.6 13.7 62 157-219 129-191 (433)
118 PRK12842 putative succinate de 99.0 9.6E-09 2.1E-13 111.1 17.7 60 158-219 216-277 (574)
119 PTZ00383 malate:quinone oxidor 99.0 6.9E-09 1.5E-13 109.1 15.9 70 151-225 206-282 (497)
120 PLN02172 flavin-containing mon 99.0 3.2E-09 7E-14 111.1 13.4 157 53-217 9-173 (461)
121 PRK08626 fumarate reductase fl 99.0 1.8E-09 3.8E-14 117.8 11.6 62 157-219 159-222 (657)
122 PRK07803 sdhA succinate dehydr 99.0 2.1E-09 4.7E-14 116.9 12.2 63 157-219 139-215 (626)
123 PRK06134 putative FAD-binding 99.0 1.5E-08 3.2E-13 109.6 18.6 60 157-218 218-279 (581)
124 COG0665 DadA Glycine/D-amino a 99.0 6.8E-08 1.5E-12 99.5 22.6 63 151-219 151-214 (387)
125 PRK12839 hypothetical protein; 99.0 1.3E-08 2.9E-13 109.4 17.6 62 156-218 214-277 (572)
126 PRK08958 sdhA succinate dehydr 99.0 5.7E-09 1.2E-13 112.7 14.1 62 157-219 144-208 (588)
127 PTZ00139 Succinate dehydrogena 99.0 9E-09 2E-13 111.7 15.6 62 157-219 167-231 (617)
128 PRK12843 putative FAD-binding 99.0 1.8E-08 3.9E-13 108.9 17.6 65 157-223 222-288 (578)
129 PRK12835 3-ketosteroid-delta-1 99.0 9.2E-09 2E-13 111.1 15.3 61 158-220 215-278 (584)
130 PLN02815 L-aspartate oxidase 99.0 8E-09 1.7E-13 111.2 14.7 164 52-219 27-224 (594)
131 PLN00128 Succinate dehydrogena 99.0 8E-09 1.7E-13 112.2 14.7 62 157-219 188-252 (635)
132 PRK08275 putative oxidoreducta 99.0 1.1E-08 2.3E-13 110.3 15.4 62 157-219 138-202 (554)
133 PRK09078 sdhA succinate dehydr 99.0 1.1E-08 2.4E-13 110.8 15.6 61 157-218 150-213 (598)
134 PRK07057 sdhA succinate dehydr 99.0 1.3E-08 2.8E-13 110.1 16.0 62 157-219 149-213 (591)
135 TIGR03329 Phn_aa_oxid putative 98.9 5.6E-09 1.2E-13 110.1 12.4 60 151-218 178-238 (460)
136 PRK08071 L-aspartate oxidase; 98.9 1.7E-08 3.7E-13 107.5 15.6 61 157-219 131-192 (510)
137 KOG2853 Possible oxidoreductas 98.9 2.5E-08 5.4E-13 95.4 14.7 172 52-226 84-330 (509)
138 PRK08641 sdhA succinate dehydr 98.9 7.7E-09 1.7E-13 111.8 12.0 63 157-219 134-202 (589)
139 PRK07395 L-aspartate oxidase; 98.9 1.3E-08 2.8E-13 109.2 13.1 61 157-218 135-198 (553)
140 PRK05335 tRNA (uracil-5-)-meth 98.9 8.4E-09 1.8E-13 104.7 10.9 114 55-183 3-126 (436)
141 PRK08401 L-aspartate oxidase; 98.9 1E-08 2.2E-13 108.1 12.0 59 157-221 121-179 (466)
142 TIGR03364 HpnW_proposed FAD de 98.9 1.6E-08 3.5E-13 103.4 13.1 58 151-218 140-198 (365)
143 PRK07512 L-aspartate oxidase; 98.9 2.7E-08 5.9E-13 106.0 14.5 62 157-219 137-199 (513)
144 TIGR02061 aprA adenosine phosp 98.9 1.5E-08 3.4E-13 109.1 12.5 61 157-218 127-192 (614)
145 PLN02612 phytoene desaturase 98.9 8.3E-07 1.8E-11 95.7 25.5 64 52-115 91-170 (567)
146 PF13738 Pyr_redox_3: Pyridine 98.9 8.3E-09 1.8E-13 96.2 8.9 136 58-218 1-139 (203)
147 PRK08205 sdhA succinate dehydr 98.8 3.9E-08 8.5E-13 106.4 14.6 62 157-219 141-208 (583)
148 TIGR01292 TRX_reduct thioredox 98.8 2.8E-08 6.1E-13 98.5 12.5 112 55-217 1-112 (300)
149 TIGR01811 sdhA_Bsu succinate d 98.8 4.1E-08 8.9E-13 106.4 14.5 62 158-219 131-198 (603)
150 COG0492 TrxB Thioredoxin reduc 98.8 2.7E-08 5.7E-13 98.0 11.1 114 53-218 2-116 (305)
151 TIGR02734 crtI_fam phytoene de 98.8 7.6E-07 1.6E-11 95.1 23.1 63 156-223 219-282 (502)
152 TIGR00562 proto_IX_ox protopor 98.8 2.9E-06 6.3E-11 89.7 26.4 61 55-115 3-82 (462)
153 PRK07233 hypothetical protein; 98.8 1.6E-06 3.4E-11 90.8 24.1 59 56-114 1-74 (434)
154 PRK14694 putative mercuric red 98.8 7.8E-08 1.7E-12 101.6 14.3 36 51-86 3-38 (468)
155 PRK05976 dihydrolipoamide dehy 98.8 3.2E-08 7E-13 104.7 11.1 143 53-217 3-154 (472)
156 KOG1399 Flavin-containing mono 98.8 6.3E-08 1.4E-12 99.8 12.5 145 53-217 5-153 (448)
157 PRK15317 alkyl hydroperoxide r 98.7 1.3E-07 2.8E-12 101.1 14.5 113 52-217 209-322 (517)
158 PRK13800 putative oxidoreducta 98.7 5.9E-08 1.3E-12 110.1 12.5 164 51-219 10-207 (897)
159 TIGR00275 flavoprotein, HI0933 98.7 7.9E-08 1.7E-12 99.3 12.5 136 58-217 1-160 (400)
160 PRK06467 dihydrolipoamide dehy 98.7 3.8E-08 8.3E-13 103.9 10.0 139 53-217 3-148 (471)
161 TIGR02732 zeta_caro_desat caro 98.7 3.3E-06 7.1E-11 89.2 24.4 60 56-115 1-76 (474)
162 PRK05249 soluble pyridine nucl 98.7 4.2E-08 9E-13 103.6 10.1 36 52-87 3-38 (461)
163 COG0029 NadB Aspartate oxidase 98.7 1.3E-07 2.7E-12 95.8 12.4 63 157-219 134-198 (518)
164 PRK06115 dihydrolipoamide dehy 98.7 5.4E-08 1.2E-12 102.7 10.4 33 54-86 3-35 (466)
165 TIGR03143 AhpF_homolog putativ 98.7 1.2E-07 2.7E-12 102.0 13.2 113 53-218 3-115 (555)
166 PLN02487 zeta-carotene desatur 98.7 5.6E-06 1.2E-10 88.6 25.5 64 53-116 74-153 (569)
167 TIGR00137 gid_trmFO tRNA:m(5)U 98.7 1.6E-07 3.4E-12 96.1 13.0 115 55-183 1-124 (433)
168 PRK06416 dihydrolipoamide dehy 98.7 1.9E-07 4.2E-12 98.6 13.9 35 53-87 3-37 (462)
169 TIGR02731 phytoene_desat phyto 98.7 1.9E-06 4.1E-11 90.9 21.2 60 56-115 1-76 (453)
170 COG2072 TrkA Predicted flavopr 98.7 1.7E-07 3.7E-12 97.7 12.8 38 51-88 5-43 (443)
171 PLN02507 glutathione reductase 98.7 9.6E-08 2.1E-12 101.4 11.0 149 52-217 23-179 (499)
172 COG3380 Predicted NAD/FAD-depe 98.7 6.5E-07 1.4E-11 83.6 14.9 34 56-89 3-36 (331)
173 KOG2404 Fumarate reductase, fl 98.6 1.5E-07 3.2E-12 89.6 10.0 162 56-219 11-208 (477)
174 PRK12416 protoporphyrinogen ox 98.6 1.9E-05 4E-10 83.6 27.2 60 56-115 3-83 (463)
175 TIGR03140 AhpF alkyl hydropero 98.6 3.4E-07 7.3E-12 97.8 14.0 113 52-217 210-323 (515)
176 TIGR01424 gluta_reduc_2 glutat 98.6 2.9E-07 6.2E-12 96.7 13.2 33 54-86 2-34 (446)
177 TIGR02485 CobZ_N-term precorri 98.6 2.7E-07 6E-12 96.5 13.0 63 157-223 124-189 (432)
178 PRK06327 dihydrolipoamide dehy 98.6 3.2E-07 6.8E-12 97.2 13.0 33 53-85 3-35 (475)
179 PRK13748 putative mercuric red 98.6 4.4E-07 9.6E-12 98.3 14.3 34 53-86 97-130 (561)
180 PRK08010 pyridine nucleotide-d 98.6 4.7E-07 1E-11 95.0 13.6 35 53-87 2-36 (441)
181 COG1231 Monoamine oxidase [Ami 98.6 3.7E-06 8E-11 84.7 18.5 41 52-92 5-45 (450)
182 PRK06116 glutathione reductase 98.6 1.7E-07 3.7E-12 98.6 9.7 34 53-86 3-36 (450)
183 KOG2852 Possible oxidoreductas 98.6 2E-07 4.4E-12 87.5 8.8 164 55-218 11-209 (380)
184 COG3573 Predicted oxidoreducta 98.6 1.5E-06 3.2E-11 83.4 14.5 38 52-89 3-40 (552)
185 PRK13977 myosin-cross-reactive 98.6 1.6E-06 3.4E-11 91.4 16.0 60 157-217 227-293 (576)
186 PRK07208 hypothetical protein; 98.6 1.2E-06 2.6E-11 93.1 15.1 38 52-89 2-39 (479)
187 PRK10262 thioredoxin reductase 98.5 1.2E-06 2.5E-11 88.1 14.0 114 52-217 4-117 (321)
188 COG1053 SdhA Succinate dehydro 98.5 5.3E-07 1.2E-11 96.0 12.0 167 52-220 4-205 (562)
189 PF00743 FMO-like: Flavin-bind 98.5 5E-07 1.1E-11 96.0 11.7 142 56-218 3-151 (531)
190 PRK14727 putative mercuric red 98.5 8.1E-07 1.8E-11 94.1 12.5 36 52-87 14-49 (479)
191 TIGR01421 gluta_reduc_1 glutat 98.5 2.3E-07 4.9E-12 97.5 8.1 33 54-86 2-34 (450)
192 PRK07251 pyridine nucleotide-d 98.5 1E-06 2.2E-11 92.4 12.9 35 53-87 2-36 (438)
193 PF06039 Mqo: Malate:quinone o 98.5 1.4E-06 3.1E-11 88.0 13.1 78 149-226 174-254 (488)
194 PF00732 GMC_oxred_N: GMC oxid 98.5 2.4E-06 5.2E-11 84.7 14.1 61 158-218 194-259 (296)
195 PLN02546 glutathione reductase 98.5 4.9E-07 1.1E-11 96.8 9.7 144 52-217 77-228 (558)
196 PRK06370 mercuric reductase; V 98.5 4.3E-07 9.3E-12 96.0 9.0 35 52-86 3-37 (463)
197 TIGR01350 lipoamide_DH dihydro 98.5 4.2E-07 9E-12 96.1 8.9 33 54-86 1-33 (461)
198 PRK07818 dihydrolipoamide dehy 98.5 1.2E-06 2.5E-11 92.7 12.2 34 53-86 3-36 (466)
199 TIGR02462 pyranose_ox pyranose 98.5 2.6E-06 5.5E-11 90.3 14.3 57 168-224 225-286 (544)
200 PTZ00058 glutathione reductase 98.5 5E-07 1.1E-11 96.7 8.9 35 52-86 46-80 (561)
201 PF07992 Pyr_redox_2: Pyridine 98.4 7.9E-07 1.7E-11 82.6 9.2 32 56-87 1-32 (201)
202 PRK07845 flavoprotein disulfid 98.4 8.2E-07 1.8E-11 93.8 10.1 145 56-218 3-152 (466)
203 COG0445 GidA Flavin-dependent 98.4 4.3E-07 9.3E-12 92.8 7.2 143 53-216 3-157 (621)
204 PF13450 NAD_binding_8: NAD(P) 98.4 4.1E-07 9E-12 68.5 5.3 31 59-89 1-31 (68)
205 TIGR01438 TGR thioredoxin and 98.4 8.9E-07 1.9E-11 93.7 9.5 33 54-86 2-34 (484)
206 PRK06912 acoL dihydrolipoamide 98.4 2.2E-06 4.8E-11 90.4 11.1 32 56-87 2-33 (458)
207 TIGR01372 soxA sarcosine oxida 98.3 6.4E-06 1.4E-10 94.5 14.8 37 52-88 161-197 (985)
208 TIGR01423 trypano_reduc trypan 98.3 3.5E-06 7.6E-11 89.1 11.8 51 53-103 2-57 (486)
209 PTZ00052 thioredoxin reductase 98.3 5.2E-06 1.1E-10 88.3 12.7 33 54-86 5-37 (499)
210 PRK06292 dihydrolipoamide dehy 98.3 4.8E-06 1E-10 87.9 11.8 34 53-86 2-35 (460)
211 TIGR02053 MerA mercuric reduct 98.3 4.8E-06 1E-10 88.0 10.9 33 55-87 1-33 (463)
212 TIGR03378 glycerol3P_GlpB glyc 98.2 2.4E-05 5.1E-10 80.0 15.1 60 156-218 263-324 (419)
213 PF00070 Pyr_redox: Pyridine n 98.2 1.8E-05 4E-10 61.7 11.3 76 56-194 1-77 (80)
214 PF13454 NAD_binding_9: FAD-NA 98.2 1.2E-05 2.5E-10 71.7 10.8 30 58-87 1-35 (156)
215 COG1249 Lpd Pyruvate/2-oxoglut 98.2 6.7E-06 1.4E-10 85.3 10.4 48 52-103 2-49 (454)
216 PTZ00153 lipoamide dehydrogena 98.2 1.1E-05 2.3E-10 87.9 11.9 34 53-86 115-148 (659)
217 KOG3923 D-aspartate oxidase [A 98.2 6.1E-05 1.3E-09 71.5 15.2 217 53-297 2-267 (342)
218 COG1233 Phytoene dehydrogenase 98.2 2.2E-06 4.8E-11 90.8 6.1 55 156-215 224-279 (487)
219 PRK09564 coenzyme A disulfide 98.1 1.3E-05 2.9E-10 84.2 11.1 32 56-87 2-35 (444)
220 PRK02106 choline dehydrogenase 98.1 6.8E-05 1.5E-09 81.2 16.7 58 162-219 206-264 (560)
221 PRK11749 dihydropyrimidine deh 98.1 5E-05 1.1E-09 80.1 15.1 37 52-88 138-174 (457)
222 KOG2311 NAD/FAD-utilizing prot 98.1 9.7E-06 2.1E-10 81.3 8.7 151 52-224 26-191 (679)
223 PRK09897 hypothetical protein; 98.1 5.3E-05 1.1E-09 80.5 14.8 33 55-87 2-36 (534)
224 KOG2844 Dimethylglycine dehydr 98.1 1.1E-05 2.4E-10 84.1 9.0 62 151-218 182-244 (856)
225 PRK13512 coenzyme A disulfide 98.1 2E-05 4.3E-10 82.6 11.1 33 56-88 3-37 (438)
226 PF13434 K_oxygenase: L-lysine 98.1 2E-05 4.3E-10 79.4 10.6 153 54-223 2-165 (341)
227 PRK12810 gltD glutamate syntha 98.1 8.1E-05 1.7E-09 78.8 15.5 37 53-89 142-178 (471)
228 TIGR01810 betA choline dehydro 98.1 0.00011 2.4E-09 79.0 16.4 60 159-218 196-257 (532)
229 PRK12779 putative bifunctional 98.1 1.3E-05 2.7E-10 91.0 9.3 35 53-87 305-339 (944)
230 KOG1335 Dihydrolipoamide dehyd 98.0 0.00031 6.7E-09 69.1 17.1 69 157-227 253-323 (506)
231 KOG2665 Predicted FAD-dependen 98.0 4.2E-05 9.2E-10 73.0 10.6 54 51-104 45-109 (453)
232 PTZ00318 NADH dehydrogenase-li 98.0 5.6E-05 1.2E-09 78.9 11.9 111 52-218 8-126 (424)
233 COG3634 AhpF Alkyl hydroperoxi 98.0 8E-06 1.7E-10 78.8 4.9 115 51-216 208-324 (520)
234 COG1232 HemY Protoporphyrinoge 97.9 2.5E-05 5.3E-10 80.5 8.3 61 56-116 2-79 (444)
235 PRK07846 mycothione reductase; 97.9 5.7E-05 1.2E-09 79.4 10.9 43 54-103 1-43 (451)
236 PRK12771 putative glutamate sy 97.9 0.00014 3.1E-09 78.8 14.2 36 53-88 136-171 (564)
237 PRK07818 dihydrolipoamide dehy 97.9 0.00029 6.2E-09 74.6 16.2 103 55-220 173-276 (466)
238 KOG0029 Amine oxidase [Seconda 97.9 1.2E-05 2.7E-10 84.5 5.7 41 52-92 13-53 (501)
239 TIGR01350 lipoamide_DH dihydro 97.9 0.00012 2.7E-09 77.2 13.4 101 55-220 171-272 (461)
240 TIGR03169 Nterm_to_SelD pyridi 97.9 5.9E-05 1.3E-09 77.1 9.9 105 56-218 1-108 (364)
241 PRK04965 NADH:flavorubredoxin 97.9 0.00015 3.4E-09 74.4 13.0 105 55-225 142-249 (377)
242 TIGR02730 carot_isom carotene 97.9 1.7E-05 3.6E-10 84.6 5.4 64 156-224 229-293 (493)
243 PLN02576 protoporphyrinogen ox 97.8 2.1E-05 4.5E-10 84.0 6.1 40 52-91 10-50 (496)
244 TIGR02733 desat_CrtD C-3',4' d 97.8 1.9E-05 4.1E-10 84.2 5.5 59 157-216 233-293 (492)
245 PRK05249 soluble pyridine nucl 97.8 0.00032 6.9E-09 74.1 14.6 99 55-220 176-275 (461)
246 PRK09754 phenylpropionate diox 97.8 0.00011 2.4E-09 76.0 10.8 34 55-88 4-39 (396)
247 PRK06416 dihydrolipoamide dehy 97.8 0.0006 1.3E-08 72.1 16.3 101 55-220 173-275 (462)
248 COG1249 Lpd Pyruvate/2-oxoglut 97.8 0.0003 6.4E-09 73.2 13.5 110 54-229 173-283 (454)
249 PRK11883 protoporphyrinogen ox 97.8 2.6E-05 5.7E-10 82.0 5.9 59 56-114 2-77 (451)
250 COG3349 Uncharacterized conser 97.8 2.6E-05 5.7E-10 80.1 5.1 36 55-90 1-36 (485)
251 PRK06327 dihydrolipoamide dehy 97.8 0.00037 8E-09 73.9 14.0 102 55-219 184-286 (475)
252 PRK09754 phenylpropionate diox 97.8 0.00028 6.1E-09 73.0 12.7 98 55-219 145-243 (396)
253 TIGR03452 mycothione_red mycot 97.8 0.00027 5.8E-09 74.4 12.6 43 54-103 2-44 (452)
254 PRK06912 acoL dihydrolipoamide 97.7 0.00036 7.8E-09 73.6 13.4 100 55-220 171-271 (458)
255 COG3075 GlpB Anaerobic glycero 97.7 3.8E-05 8.3E-10 73.8 5.2 51 53-109 1-51 (421)
256 PLN02268 probable polyamine ox 97.7 3.6E-05 7.9E-10 80.7 5.6 36 55-90 1-36 (435)
257 PRK06370 mercuric reductase; V 97.7 0.00084 1.8E-08 71.0 15.8 101 55-219 172-273 (463)
258 PRK05976 dihydrolipoamide dehy 97.7 0.00037 8E-09 73.8 13.1 101 55-219 181-283 (472)
259 PRK06115 dihydrolipoamide dehy 97.7 0.00034 7.3E-09 74.0 12.6 103 54-219 174-278 (466)
260 COG1206 Gid NAD(FAD)-utilizing 97.7 0.00011 2.4E-09 70.7 7.9 117 54-184 3-128 (439)
261 TIGR00031 UDP-GALP_mutase UDP- 97.7 3.8E-05 8.3E-10 78.0 5.1 34 55-88 2-35 (377)
262 PRK15317 alkyl hydroperoxide r 97.7 0.00037 8E-09 74.7 12.5 96 55-217 352-449 (517)
263 TIGR02053 MerA mercuric reduct 97.7 0.0011 2.5E-08 70.0 16.1 101 55-219 167-268 (463)
264 KOG0404 Thioredoxin reductase 97.7 0.00022 4.8E-09 64.9 8.9 118 52-216 6-123 (322)
265 TIGR03377 glycerol3P_GlpA glyc 97.7 0.002 4.3E-08 69.2 17.9 73 152-225 124-199 (516)
266 COG1252 Ndh NADH dehydrogenase 97.7 0.00025 5.5E-09 72.0 10.3 108 54-218 3-112 (405)
267 TIGR02352 thiamin_ThiO glycine 97.7 0.0024 5.1E-08 64.3 17.4 62 151-218 132-194 (337)
268 TIGR03315 Se_ygfK putative sel 97.7 4.9E-05 1.1E-09 85.8 5.4 36 53-88 536-571 (1012)
269 PTZ00363 rab-GDP dissociation 97.6 5.8E-05 1.3E-09 78.5 5.4 38 52-89 2-39 (443)
270 TIGR03197 MnmC_Cterm tRNA U-34 97.6 0.0025 5.3E-08 65.6 17.4 61 151-218 130-191 (381)
271 TIGR03140 AhpF alkyl hydropero 97.6 0.00062 1.4E-08 72.9 13.2 96 55-217 353-450 (515)
272 PLN02568 polyamine oxidase 97.6 0.0001 2.2E-09 78.9 6.8 39 52-90 3-46 (539)
273 PRK06467 dihydrolipoamide dehy 97.6 0.00062 1.3E-08 72.1 12.6 102 55-220 175-277 (471)
274 KOG2960 Protein involved in th 97.6 0.00011 2.3E-09 66.4 5.7 35 54-88 76-112 (328)
275 COG1148 HdrA Heterodisulfide r 97.6 6.8E-05 1.5E-09 75.7 4.9 36 54-89 124-159 (622)
276 PRK07251 pyridine nucleotide-d 97.6 0.0012 2.7E-08 69.1 14.8 97 55-219 158-255 (438)
277 PLN02852 ferredoxin-NADP+ redu 97.6 9.5E-05 2.1E-09 77.7 6.1 38 52-89 24-63 (491)
278 PLN02507 glutathione reductase 97.6 0.001 2.3E-08 70.8 14.1 98 55-219 204-302 (499)
279 PRK12831 putative oxidoreducta 97.6 7.8E-05 1.7E-09 78.6 5.4 36 52-87 138-173 (464)
280 COG2907 Predicted NAD/FAD-bind 97.6 0.00046 1E-08 67.1 10.0 35 53-88 7-41 (447)
281 TIGR01421 gluta_reduc_1 glutat 97.6 0.0014 3E-08 69.0 14.6 100 55-219 167-267 (450)
282 PRK06116 glutathione reductase 97.6 0.00084 1.8E-08 70.7 12.9 99 55-219 168-267 (450)
283 TIGR01292 TRX_reduct thioredox 97.6 0.0012 2.5E-08 65.3 13.2 95 55-217 142-238 (300)
284 COG0562 Glf UDP-galactopyranos 97.6 8.8E-05 1.9E-09 71.3 4.8 34 55-88 2-35 (374)
285 COG2509 Uncharacterized FAD-de 97.5 0.00039 8.4E-09 70.2 9.3 56 157-217 174-230 (486)
286 PRK04965 NADH:flavorubredoxin 97.5 0.00047 1E-08 70.8 10.3 34 55-88 3-38 (377)
287 TIGR01424 gluta_reduc_2 glutat 97.5 0.0022 4.8E-08 67.4 15.4 98 55-219 167-265 (446)
288 PF01593 Amino_oxidase: Flavin 97.5 0.0017 3.7E-08 67.3 14.5 55 158-218 211-266 (450)
289 KOG1276 Protoporphyrinogen oxi 97.5 0.00026 5.7E-09 70.7 7.6 69 52-120 9-98 (491)
290 PRK10262 thioredoxin reductase 97.5 0.0012 2.7E-08 66.1 12.9 100 55-218 147-249 (321)
291 PRK05329 anaerobic glycerol-3- 97.5 0.00012 2.5E-09 75.7 5.2 34 54-87 2-35 (422)
292 PRK06292 dihydrolipoamide dehy 97.5 0.0012 2.6E-08 69.8 12.8 101 55-220 170-271 (460)
293 PLN02785 Protein HOTHEAD 97.5 0.00026 5.6E-09 76.5 7.7 36 52-88 53-88 (587)
294 PRK06567 putative bifunctional 97.5 0.00013 2.8E-09 81.2 5.2 34 53-86 382-415 (1028)
295 PLN02328 lysine-specific histo 97.5 0.00014 3E-09 80.3 5.5 38 52-89 236-273 (808)
296 PRK07845 flavoprotein disulfid 97.4 0.0016 3.5E-08 68.9 13.1 99 55-220 178-277 (466)
297 PRK07846 mycothione reductase; 97.4 0.0014 3.1E-08 68.9 12.7 97 55-219 167-264 (451)
298 PLN02676 polyamine oxidase 97.4 0.00018 4E-09 76.2 5.8 36 54-89 26-62 (487)
299 PRK09853 putative selenate red 97.4 0.00016 3.5E-09 81.4 5.4 36 53-88 538-573 (1019)
300 TIGR01316 gltA glutamate synth 97.4 0.00019 4E-09 75.5 5.6 35 53-87 132-166 (449)
301 PRK12769 putative oxidoreducta 97.4 0.00017 3.7E-09 79.5 5.2 36 53-88 326-361 (654)
302 TIGR02374 nitri_red_nirB nitri 97.4 0.0014 3.1E-08 73.6 12.4 98 55-218 141-239 (785)
303 PRK08010 pyridine nucleotide-d 97.4 0.0022 4.9E-08 67.3 13.1 97 55-219 159-256 (441)
304 PRK14989 nitrite reductase sub 97.4 0.00088 1.9E-08 75.5 10.5 34 55-88 4-41 (847)
305 TIGR02374 nitri_red_nirB nitri 97.4 0.0007 1.5E-08 76.0 9.6 32 57-88 1-35 (785)
306 PLN02529 lysine-specific histo 97.4 0.00028 6.2E-09 77.5 6.3 37 52-88 158-194 (738)
307 PRK14989 nitrite reductase sub 97.4 0.0016 3.4E-08 73.5 12.2 100 55-219 146-247 (847)
308 PTZ00188 adrenodoxin reductase 97.4 0.00027 5.9E-09 73.4 5.7 36 54-89 39-75 (506)
309 PRK12775 putative trifunctiona 97.3 0.00023 4.9E-09 81.7 5.5 35 54-88 430-464 (1006)
310 TIGR03385 CoA_CoA_reduc CoA-di 97.3 0.002 4.4E-08 67.3 12.2 96 55-218 138-234 (427)
311 TIGR03452 mycothione_red mycot 97.3 0.0043 9.4E-08 65.3 14.7 97 55-219 170-267 (452)
312 PTZ00052 thioredoxin reductase 97.3 0.0018 3.9E-08 69.0 11.8 97 56-220 184-281 (499)
313 TIGR01438 TGR thioredoxin and 97.3 0.0018 3.9E-08 68.7 11.8 99 55-219 181-281 (484)
314 PRK12778 putative bifunctional 97.3 0.00027 5.9E-09 79.2 5.7 35 53-87 430-464 (752)
315 TIGR01423 trypano_reduc trypan 97.3 0.0039 8.4E-08 66.2 13.8 100 55-220 188-291 (486)
316 PRK14694 putative mercuric red 97.3 0.0026 5.6E-08 67.4 12.6 96 55-219 179-275 (468)
317 PRK12770 putative glutamate sy 97.3 0.00041 9E-09 70.5 6.0 34 54-87 18-51 (352)
318 PRK13748 putative mercuric red 97.3 0.0039 8.4E-08 67.7 13.9 96 55-219 271-367 (561)
319 PRK09564 coenzyme A disulfide 97.3 0.0028 6.2E-08 66.6 12.5 97 55-218 150-247 (444)
320 PTZ00058 glutathione reductase 97.3 0.0024 5.1E-08 68.8 11.9 101 54-219 237-338 (561)
321 PRK14727 putative mercuric red 97.3 0.0021 4.5E-08 68.3 11.4 97 55-220 189-286 (479)
322 COG0446 HcaD Uncharacterized N 97.3 0.0026 5.7E-08 65.8 12.0 102 54-218 136-238 (415)
323 COG4529 Uncharacterized protei 97.2 0.0016 3.4E-08 66.7 9.4 34 55-88 2-38 (474)
324 COG0493 GltD NADPH-dependent g 97.2 0.00032 6.8E-09 73.1 4.5 35 55-89 124-158 (457)
325 PRK13512 coenzyme A disulfide 97.2 0.0026 5.5E-08 66.8 11.4 94 55-219 149-243 (438)
326 PLN02546 glutathione reductase 97.2 0.0056 1.2E-07 65.9 14.0 100 55-220 253-353 (558)
327 PRK12814 putative NADPH-depend 97.2 0.00043 9.3E-09 76.1 5.6 36 53-88 192-227 (652)
328 PF13434 K_oxygenase: L-lysine 97.2 0.0017 3.6E-08 65.5 9.1 138 52-215 188-339 (341)
329 KOG4716 Thioredoxin reductase 97.2 0.0026 5.7E-08 61.7 9.7 145 52-218 17-174 (503)
330 TIGR01317 GOGAT_sm_gam glutama 97.2 0.00054 1.2E-08 72.7 5.7 35 54-88 143-177 (485)
331 TIGR01318 gltD_gamma_fam gluta 97.2 0.00051 1.1E-08 72.5 5.5 36 53-88 140-175 (467)
332 PRK12770 putative glutamate sy 97.1 0.0033 7.3E-08 63.9 10.4 32 55-86 173-205 (352)
333 TIGR01316 gltA glutamate synth 97.1 0.0054 1.2E-07 64.5 12.2 33 55-87 273-305 (449)
334 COG2303 BetA Choline dehydroge 97.1 0.00054 1.2E-08 73.5 4.7 58 161-218 207-267 (542)
335 PRK12809 putative oxidoreducta 97.0 0.00065 1.4E-08 74.6 5.2 36 53-88 309-344 (639)
336 PRK05675 sdhA succinate dehydr 97.0 0.0042 9E-08 67.3 10.7 62 157-219 127-191 (570)
337 KOG0685 Flavin-containing amin 96.9 0.0011 2.4E-08 67.3 5.1 42 53-94 20-62 (498)
338 PTZ00318 NADH dehydrogenase-li 96.9 0.0066 1.4E-07 63.4 10.9 91 56-217 175-280 (424)
339 KOG0405 Pyridine nucleotide-di 96.9 0.0045 9.7E-08 60.4 8.5 36 51-86 17-52 (478)
340 PRK12831 putative oxidoreducta 96.9 0.0098 2.1E-07 62.8 12.0 33 55-87 282-314 (464)
341 PLN03000 amine oxidase 96.9 0.0014 3E-08 72.7 5.7 37 53-89 183-219 (881)
342 COG1252 Ndh NADH dehydrogenase 96.8 0.0046 1E-07 63.0 8.7 57 158-223 211-269 (405)
343 PLN02976 amine oxidase 96.8 0.0017 3.6E-08 74.8 5.9 38 52-89 691-728 (1713)
344 PRK13984 putative oxidoreducta 96.7 0.0019 4.1E-08 70.7 5.3 37 52-88 281-317 (604)
345 PTZ00153 lipoamide dehydrogena 96.7 0.014 3E-07 63.9 11.9 33 55-87 313-345 (659)
346 TIGR03143 AhpF_homolog putativ 96.6 0.016 3.5E-07 62.6 11.9 33 55-87 144-176 (555)
347 KOG1336 Monodehydroascorbate/f 96.6 0.019 4.2E-07 58.6 11.0 101 54-219 213-315 (478)
348 KOG4254 Phytoene desaturase [C 96.5 0.0029 6.2E-08 63.8 4.4 62 157-223 265-327 (561)
349 TIGR01372 soxA sarcosine oxida 96.4 0.033 7.1E-07 64.4 13.0 94 55-219 318-413 (985)
350 COG3486 IucD Lysine/ornithine 96.3 0.0098 2.1E-07 59.5 6.8 149 52-220 3-160 (436)
351 PRK12778 putative bifunctional 96.2 0.044 9.5E-07 61.6 12.6 33 55-87 571-604 (752)
352 KOG1800 Ferredoxin/adrenodoxin 96.2 0.0059 1.3E-07 60.3 4.8 37 54-90 20-58 (468)
353 KOG1238 Glucose dehydrogenase/ 96.2 0.01 2.2E-07 62.9 6.8 39 51-89 54-93 (623)
354 PF06100 Strep_67kDa_ant: Stre 96.1 0.06 1.3E-06 55.8 11.8 34 55-88 3-40 (500)
355 KOG0399 Glutamate synthase [Am 96.1 0.006 1.3E-07 67.6 4.5 34 54-87 1785-1818(2142)
356 COG0569 TrkA K+ transport syst 95.9 0.014 2.9E-07 55.3 5.7 58 56-113 2-66 (225)
357 PRK12769 putative oxidoreducta 95.9 0.067 1.4E-06 59.2 11.8 33 55-87 469-502 (654)
358 TIGR03169 Nterm_to_SelD pyridi 95.9 0.06 1.3E-06 54.9 10.6 49 159-217 194-243 (364)
359 PLN02852 ferredoxin-NADP+ redu 95.8 0.14 3.1E-06 54.1 13.3 60 158-217 268-354 (491)
360 PRK12779 putative bifunctional 95.8 0.1 2.2E-06 59.8 12.9 33 55-87 448-480 (944)
361 PF01210 NAD_Gly3P_dh_N: NAD-d 95.7 0.013 2.8E-07 52.1 4.3 32 56-87 1-32 (157)
362 TIGR01318 gltD_gamma_fam gluta 95.7 0.11 2.5E-06 54.8 12.0 34 54-87 282-316 (467)
363 PF02737 3HCDH_N: 3-hydroxyacy 95.5 0.018 3.9E-07 52.4 4.6 32 56-87 1-32 (180)
364 PRK12814 putative NADPH-depend 95.3 0.14 3E-06 56.5 11.6 34 54-87 323-357 (652)
365 TIGR01816 sdhA_forward succina 95.2 0.077 1.7E-06 57.5 9.1 62 157-219 120-183 (565)
366 KOG3851 Sulfide:quinone oxidor 95.2 0.021 4.6E-07 55.2 4.0 37 51-87 36-74 (446)
367 KOG2495 NADH-dehydrogenase (ub 95.1 0.079 1.7E-06 53.5 7.8 50 170-224 286-337 (491)
368 PF03721 UDPG_MGDP_dh_N: UDP-g 95.0 0.025 5.3E-07 51.7 3.9 33 55-87 1-33 (185)
369 COG0492 TrxB Thioredoxin reduc 95.0 0.27 5.9E-06 48.6 11.4 94 55-217 144-238 (305)
370 PRK13984 putative oxidoreducta 94.9 0.3 6.4E-06 53.6 12.5 30 55-84 419-454 (604)
371 COG3634 AhpF Alkyl hydroperoxi 94.8 0.25 5.4E-06 48.6 10.0 82 54-202 354-437 (520)
372 COG1251 NirB NAD(P)H-nitrite r 94.7 0.084 1.8E-06 56.9 7.3 97 56-218 147-244 (793)
373 PRK02705 murD UDP-N-acetylmura 94.7 0.036 7.7E-07 58.6 4.7 33 56-88 2-34 (459)
374 PF00996 GDI: GDP dissociation 94.7 0.033 7.2E-07 57.6 4.3 37 52-88 2-38 (438)
375 PF02558 ApbA: Ketopantoate re 94.7 0.047 1E-06 47.9 4.7 31 57-87 1-31 (151)
376 PRK01438 murD UDP-N-acetylmura 94.6 0.04 8.6E-07 58.6 4.8 33 55-87 17-49 (480)
377 PRK05329 anaerobic glycerol-3- 94.6 0.22 4.7E-06 51.8 9.9 56 158-216 261-317 (422)
378 PRK12775 putative trifunctiona 94.5 0.33 7.1E-06 56.2 12.2 33 54-86 571-604 (1006)
379 TIGR03862 flavo_PP4765 unchara 94.5 0.45 9.8E-06 48.5 11.8 55 156-217 86-141 (376)
380 PRK06249 2-dehydropantoate 2-r 94.4 0.062 1.3E-06 53.6 5.3 34 54-87 5-38 (313)
381 TIGR01317 GOGAT_sm_gam glutama 94.2 0.65 1.4E-05 49.4 12.9 33 55-87 284-317 (485)
382 PRK06129 3-hydroxyacyl-CoA deh 94.2 0.05 1.1E-06 54.2 4.2 32 56-87 4-35 (308)
383 TIGR03315 Se_ygfK putative sel 93.9 0.66 1.4E-05 53.2 12.7 34 54-87 666-701 (1012)
384 KOG1336 Monodehydroascorbate/f 93.9 0.28 6.1E-06 50.4 8.7 33 54-86 74-108 (478)
385 PRK05708 2-dehydropantoate 2-r 93.8 0.08 1.7E-06 52.6 4.8 33 55-87 3-35 (305)
386 PRK12809 putative oxidoreducta 93.8 0.52 1.1E-05 52.0 11.4 34 54-87 451-485 (639)
387 PRK07819 3-hydroxybutyryl-CoA 93.6 0.095 2.1E-06 51.5 4.8 32 56-87 7-38 (286)
388 PRK08293 3-hydroxybutyryl-CoA 93.6 0.09 1.9E-06 51.8 4.6 33 55-87 4-36 (287)
389 TIGR02354 thiF_fam2 thiamine b 93.6 0.11 2.4E-06 48.1 4.9 34 53-86 20-54 (200)
390 PRK07066 3-hydroxybutyryl-CoA 93.3 0.097 2.1E-06 52.2 4.4 33 55-87 8-40 (321)
391 PRK06522 2-dehydropantoate 2-r 93.3 0.096 2.1E-06 51.9 4.4 32 56-87 2-33 (304)
392 PRK12921 2-dehydropantoate 2-r 93.2 0.1 2.3E-06 51.7 4.5 30 56-85 2-31 (305)
393 PF01262 AlaDh_PNT_C: Alanine 93.2 0.14 2.9E-06 46.1 4.8 36 52-87 18-53 (168)
394 PRK14106 murD UDP-N-acetylmura 93.1 0.14 3E-06 54.0 5.4 34 54-87 5-38 (450)
395 PRK09260 3-hydroxybutyryl-CoA 93.1 0.11 2.5E-06 51.1 4.5 32 56-87 3-34 (288)
396 PF13241 NAD_binding_7: Putati 93.1 0.1 2.2E-06 42.7 3.4 33 54-86 7-39 (103)
397 TIGR03467 HpnE squalene-associ 93.0 2.9 6.2E-05 43.2 15.1 52 160-216 201-253 (419)
398 TIGR01470 cysG_Nterm siroheme 93.0 0.16 3.4E-06 47.3 5.0 33 55-87 10-42 (205)
399 PF01488 Shikimate_DH: Shikima 92.9 0.18 3.9E-06 43.5 5.0 35 53-87 11-46 (135)
400 PRK06035 3-hydroxyacyl-CoA deh 92.9 0.13 2.8E-06 50.7 4.6 32 56-87 5-36 (291)
401 PRK07530 3-hydroxybutyryl-CoA 92.9 0.16 3.4E-06 50.2 5.2 33 55-87 5-37 (292)
402 PRK09853 putative selenate red 92.7 1.2 2.7E-05 50.9 12.4 33 55-87 669-703 (1019)
403 PRK06719 precorrin-2 dehydroge 92.6 0.21 4.5E-06 44.3 5.0 32 54-85 13-44 (157)
404 PRK10669 putative cation:proto 92.6 0.26 5.5E-06 53.5 6.7 35 54-88 417-451 (558)
405 COG1004 Ugd Predicted UDP-gluc 92.5 0.14 3.1E-06 51.4 4.2 34 55-88 1-34 (414)
406 PRK15116 sulfur acceptor prote 92.5 0.19 4.2E-06 48.6 5.0 35 53-87 29-64 (268)
407 cd05292 LDH_2 A subgroup of L- 92.5 0.17 3.6E-06 50.4 4.8 32 56-87 2-35 (308)
408 PRK05808 3-hydroxybutyryl-CoA 92.4 0.16 3.4E-06 49.8 4.5 32 56-87 5-36 (282)
409 TIGR00518 alaDH alanine dehydr 92.4 0.18 4E-06 51.4 5.0 34 54-87 167-200 (370)
410 PF13738 Pyr_redox_3: Pyridine 92.4 0.17 3.7E-06 46.6 4.4 35 53-87 166-200 (203)
411 PRK06718 precorrin-2 dehydroge 92.3 0.23 4.9E-06 46.1 5.1 33 54-86 10-42 (202)
412 PRK09424 pntA NAD(P) transhydr 92.3 0.15 3.2E-06 54.0 4.2 35 53-87 164-198 (509)
413 PF02254 TrkA_N: TrkA-N domain 92.3 0.23 5E-06 41.3 4.7 31 57-87 1-31 (116)
414 PF13478 XdhC_C: XdhC Rossmann 92.2 0.16 3.5E-06 43.8 3.7 32 57-88 1-32 (136)
415 PF00899 ThiF: ThiF family; I 92.1 0.2 4.3E-06 43.2 4.2 34 54-87 2-36 (135)
416 PRK12475 thiamine/molybdopteri 92.1 0.22 4.7E-06 50.2 5.0 34 54-87 24-58 (338)
417 PRK14620 NAD(P)H-dependent gly 92.1 0.19 4.2E-06 50.4 4.7 32 56-87 2-33 (326)
418 PRK08229 2-dehydropantoate 2-r 92.1 0.19 4.2E-06 50.7 4.7 32 55-86 3-34 (341)
419 cd00401 AdoHcyase S-adenosyl-L 92.0 0.19 4.2E-06 51.7 4.6 34 54-87 202-235 (413)
420 TIGR01763 MalateDH_bact malate 91.9 0.24 5.3E-06 49.1 5.1 33 55-87 2-35 (305)
421 PRK14619 NAD(P)H-dependent gly 91.9 0.26 5.6E-06 49.1 5.3 35 53-87 3-37 (308)
422 KOG0404 Thioredoxin reductase 91.8 1.8 3.8E-05 40.2 9.9 102 54-223 157-260 (322)
423 PRK11064 wecC UDP-N-acetyl-D-m 91.7 0.21 4.5E-06 51.9 4.6 34 55-88 4-37 (415)
424 cd01080 NAD_bind_m-THF_DH_Cycl 91.7 0.29 6.4E-06 43.8 4.9 35 52-86 42-77 (168)
425 PRK07688 thiamine/molybdopteri 91.7 0.26 5.6E-06 49.6 5.0 35 53-87 23-58 (339)
426 PRK04148 hypothetical protein; 91.6 0.2 4.3E-06 42.9 3.5 32 55-87 18-49 (134)
427 TIGR02356 adenyl_thiF thiazole 91.5 0.31 6.7E-06 45.2 5.0 35 53-87 20-55 (202)
428 COG5044 MRS6 RAB proteins gera 91.4 0.36 7.7E-06 48.0 5.4 36 53-88 5-40 (434)
429 TIGR02355 moeB molybdopterin s 91.2 0.32 7E-06 46.4 4.9 35 53-87 23-58 (240)
430 PF00743 FMO-like: Flavin-bind 91.2 0.69 1.5E-05 49.6 7.9 34 54-87 183-216 (531)
431 PRK06130 3-hydroxybutyryl-CoA 91.1 0.33 7.2E-06 48.3 5.2 33 55-87 5-37 (311)
432 TIGR03026 NDP-sugDHase nucleot 91.1 0.23 4.9E-06 51.7 4.1 33 56-88 2-34 (411)
433 PF00056 Ldh_1_N: lactate/mala 91.0 0.4 8.7E-06 41.6 4.9 33 55-87 1-36 (141)
434 PRK14618 NAD(P)H-dependent gly 90.9 0.33 7.2E-06 48.7 5.0 33 55-87 5-37 (328)
435 cd01487 E1_ThiF_like E1_ThiF_l 90.8 0.35 7.7E-06 43.7 4.6 32 56-87 1-33 (174)
436 PRK12549 shikimate 5-dehydroge 90.8 0.33 7.2E-06 47.6 4.7 33 54-86 127-160 (284)
437 PRK00066 ldh L-lactate dehydro 90.8 0.46 9.9E-06 47.4 5.7 35 53-87 5-41 (315)
438 PRK08644 thiamine biosynthesis 90.6 0.4 8.8E-06 44.8 4.9 35 53-87 27-62 (212)
439 PLN02545 3-hydroxybutyryl-CoA 90.4 0.35 7.7E-06 47.7 4.6 32 56-87 6-37 (295)
440 PRK08328 hypothetical protein; 90.4 0.42 9.2E-06 45.3 4.9 34 54-87 27-61 (231)
441 PRK00094 gpsA NAD(P)H-dependen 90.3 0.37 8.1E-06 48.2 4.8 32 56-87 3-34 (325)
442 PRK05690 molybdopterin biosynt 90.3 0.43 9.3E-06 45.7 4.9 35 53-87 31-66 (245)
443 PRK07417 arogenate dehydrogena 90.3 0.34 7.4E-06 47.4 4.3 32 56-87 2-33 (279)
444 cd01483 E1_enzyme_family Super 90.0 0.51 1.1E-05 41.0 4.8 32 56-87 1-33 (143)
445 PRK06567 putative bifunctional 90.0 1.2 2.7E-05 50.5 8.7 32 55-86 551-585 (1028)
446 KOG1346 Programmed cell death 90.0 0.56 1.2E-05 47.3 5.4 48 163-216 400-448 (659)
447 PRK06223 malate dehydrogenase; 90.0 0.45 9.8E-06 47.3 5.0 33 55-87 3-36 (307)
448 PRK15057 UDP-glucose 6-dehydro 89.8 0.39 8.4E-06 49.4 4.4 32 56-88 2-33 (388)
449 cd05311 NAD_bind_2_malic_enz N 89.7 0.47 1E-05 44.8 4.6 32 55-86 26-60 (226)
450 PLN02353 probable UDP-glucose 89.6 0.42 9E-06 50.4 4.5 34 55-88 2-37 (473)
451 TIGR00936 ahcY adenosylhomocys 89.6 0.44 9.6E-06 48.9 4.6 34 54-87 195-228 (406)
452 PTZ00082 L-lactate dehydrogena 89.6 0.55 1.2E-05 46.9 5.2 34 55-88 7-41 (321)
453 TIGR02279 PaaC-3OHAcCoADH 3-hy 89.6 0.48 1E-05 50.4 5.0 34 55-88 6-39 (503)
454 cd00757 ThiF_MoeB_HesA_family 89.5 0.56 1.2E-05 44.4 5.0 35 53-87 20-55 (228)
455 PF10727 Rossmann-like: Rossma 89.5 0.23 5E-06 42.2 2.1 35 52-86 8-42 (127)
456 TIGR03736 PRTRC_ThiF PRTRC sys 89.5 0.54 1.2E-05 44.8 4.8 36 52-87 9-55 (244)
457 PF00670 AdoHcyase_NAD: S-aden 89.5 0.44 9.5E-06 42.1 3.9 33 55-87 24-56 (162)
458 PRK07531 bifunctional 3-hydrox 89.4 0.47 1E-05 50.5 4.9 33 55-87 5-37 (495)
459 cd05291 HicDH_like L-2-hydroxy 89.4 0.49 1.1E-05 47.0 4.7 32 56-87 2-35 (306)
460 COG1063 Tdh Threonine dehydrog 89.4 0.44 9.4E-06 48.4 4.4 32 56-87 171-203 (350)
461 PRK08223 hypothetical protein; 89.4 0.54 1.2E-05 45.8 4.8 35 53-87 26-61 (287)
462 PRK08306 dipicolinate synthase 89.3 0.56 1.2E-05 46.3 5.0 34 54-87 152-185 (296)
463 TIGR02964 xanthine_xdhC xanthi 89.3 0.62 1.3E-05 44.6 5.1 36 53-88 99-134 (246)
464 cd00755 YgdL_like Family of ac 89.1 0.63 1.4E-05 44.1 4.9 34 54-87 11-45 (231)
465 TIGR00561 pntA NAD(P) transhyd 89.0 0.51 1.1E-05 49.9 4.7 34 54-87 164-197 (511)
466 COG1748 LYS9 Saccharopine dehy 88.9 0.52 1.1E-05 47.9 4.5 34 55-88 2-36 (389)
467 cd01339 LDH-like_MDH L-lactate 88.9 0.5 1.1E-05 46.8 4.4 31 57-87 1-32 (300)
468 TIGR02730 carot_isom carotene 88.8 1.3 2.9E-05 47.1 7.8 35 55-89 1-35 (493)
469 TIGR01915 npdG NADPH-dependent 88.7 0.6 1.3E-05 43.9 4.6 32 56-87 2-34 (219)
470 PRK11730 fadB multifunctional 88.7 0.48 1E-05 52.8 4.5 33 55-87 314-346 (715)
471 cd05293 LDH_1 A subgroup of L- 88.6 0.74 1.6E-05 45.8 5.3 34 54-87 3-38 (312)
472 PRK11749 dihydropyrimidine deh 88.6 0.54 1.2E-05 49.6 4.6 34 54-87 273-307 (457)
473 PRK03659 glutathione-regulated 88.5 1.1 2.5E-05 48.9 7.1 34 54-87 400-433 (601)
474 PRK08268 3-hydroxy-acyl-CoA de 88.5 0.57 1.2E-05 50.0 4.6 34 55-88 8-41 (507)
475 PF03446 NAD_binding_2: NAD bi 88.4 0.71 1.5E-05 41.1 4.6 33 55-87 2-34 (163)
476 TIGR02437 FadB fatty oxidation 88.4 0.52 1.1E-05 52.5 4.5 34 55-88 314-347 (714)
477 PRK05476 S-adenosyl-L-homocyst 88.3 0.63 1.4E-05 48.2 4.7 34 54-87 212-245 (425)
478 PRK07502 cyclohexadienyl dehyd 88.3 0.7 1.5E-05 45.9 5.0 33 55-87 7-41 (307)
479 PRK04308 murD UDP-N-acetylmura 88.3 0.8 1.7E-05 48.1 5.6 33 55-87 6-38 (445)
480 KOG2495 NADH-dehydrogenase (ub 88.2 8.3 0.00018 39.5 12.1 117 52-219 53-172 (491)
481 PRK03369 murD UDP-N-acetylmura 88.1 0.61 1.3E-05 49.6 4.6 32 55-86 13-44 (488)
482 cd01078 NAD_bind_H4MPT_DH NADP 88.0 0.86 1.9E-05 41.9 5.0 32 55-86 29-61 (194)
483 PRK02472 murD UDP-N-acetylmura 88.0 0.78 1.7E-05 48.2 5.4 32 56-87 7-38 (447)
484 PTZ00117 malate dehydrogenase; 87.9 0.83 1.8E-05 45.6 5.2 34 54-87 5-39 (319)
485 COG1893 ApbA Ketopantoate redu 87.9 0.6 1.3E-05 46.3 4.1 32 56-87 2-33 (307)
486 cd01485 E1-1_like Ubiquitin ac 87.9 0.8 1.7E-05 42.3 4.7 34 54-87 19-53 (198)
487 KOG2304 3-hydroxyacyl-CoA dehy 87.8 0.61 1.3E-05 43.1 3.7 34 54-87 11-44 (298)
488 cd01075 NAD_bind_Leu_Phe_Val_D 87.6 0.95 2.1E-05 41.9 5.1 32 55-86 29-60 (200)
489 COG1179 Dinucleotide-utilizing 87.6 0.67 1.5E-05 43.4 3.9 34 54-87 30-64 (263)
490 PRK09496 trkA potassium transp 87.5 0.71 1.5E-05 48.6 4.7 33 56-88 2-34 (453)
491 PRK01710 murD UDP-N-acetylmura 87.5 0.72 1.6E-05 48.7 4.7 33 55-87 15-47 (458)
492 cd01492 Aos1_SUMO Ubiquitin ac 87.4 0.86 1.9E-05 42.1 4.6 34 54-87 21-55 (197)
493 PRK05600 thiamine biosynthesis 87.4 0.87 1.9E-05 46.4 5.0 35 53-87 40-75 (370)
494 KOG2018 Predicted dinucleotide 87.3 2.9 6.2E-05 40.6 8.0 52 56-112 76-128 (430)
495 PRK12548 shikimate 5-dehydroge 87.2 0.89 1.9E-05 44.7 4.9 33 55-87 127-160 (289)
496 TIGR02853 spore_dpaA dipicolin 87.1 0.92 2E-05 44.6 4.8 34 54-87 151-184 (287)
497 TIGR02441 fa_ox_alpha_mit fatt 86.9 0.71 1.5E-05 51.6 4.5 33 55-87 336-368 (737)
498 cd05191 NAD_bind_amino_acid_DH 86.8 1.6 3.5E-05 34.2 5.3 31 55-85 24-55 (86)
499 PRK05597 molybdopterin biosynt 86.8 0.91 2E-05 46.1 4.8 35 53-87 27-62 (355)
500 COG0771 MurD UDP-N-acetylmuram 86.8 0.79 1.7E-05 47.6 4.3 36 54-89 7-42 (448)
No 1
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-93 Score=678.82 Aligned_cols=506 Identities=67% Similarity=1.102 Sum_probs=469.9
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCcccccccCcccccccccCCCCCCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEc
Q 009994 5 IAGTLIAAVFLLLFVVRRNDSKKPRKVSTTYKTQNDVFRSSVNAGKNGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIE 84 (520)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E 84 (520)
++..++.+++.|.++|......+.+++.....+.. . ....+..+||+|||||++|.++|+.|+|.|.+|+|+|
T Consensus 3 ~~~~~l~~l~af~l~~~~~~~~~~~~~a~~~~~~~-----~--~~~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIE 75 (509)
T KOG1298|consen 3 LTSVCLWTLLAFVLTWTVFYLTKRKKKATNVAETS-----V--EARNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIE 75 (509)
T ss_pred hHHHHHHHHHHHHhhheeeecccccccccccchhh-----h--hhccCCcccEEEECCcchHHHHHHHHhhCCcEEEEEe
Confidence 45566667777777772222111111121111111 1 1233667899999999999999999999999999999
Q ss_pred cCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCccccccCCCcCCCCCccceeecchHHHHHHHH
Q 009994 85 RDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMRE 164 (520)
Q Consensus 85 r~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 164 (520)
|+..+++|+.|+.+||+|...|+++|+.|+++.+++++..||.++.+|+...+.||..++...+.|+.+|+++|.+.|++
T Consensus 76 RDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ 155 (509)
T KOG1298|consen 76 RDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRK 155 (509)
T ss_pred cccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcchhhhhhcCCCCC-CcccceeeEEeccC
Q 009994 165 KAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLRRSLCKPKVD-VPSCFVGLVLENCQ 243 (520)
Q Consensus 165 ~~~~~~~v~i~~~~v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~vR~~l~~~~~~-~~~~~~~~~~~~~~ 243 (520)
.+.+.||+++.+|+|.++.++++.+.||+++++.|++.+..|.+.|.|||++|++|+.|..+... ..++++|++..+++
T Consensus 156 ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~k~gee~~~~ApLTvVCDGcfSnlRrsL~~~~v~~V~S~fVG~vl~N~~ 235 (509)
T KOG1298|consen 156 KAASLPNVRLEEGTVKSLLEEEGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCDPKVEEVPSYFVGLVLKNCR 235 (509)
T ss_pred HHhcCCCeEEeeeeHHHHHhccCeEEeEEEecCCCceEEEecceEEEecchhHHHHHHhcCCcccccchheeeeeecCCC
Confidence 99999999999999999999999999999999999989999999999999999999999875544 88999999999999
Q ss_pred CCCCCceEEEecCCCcEEEEecCCCeEEEEEEeCCCCCCCCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecC
Q 009994 244 LPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQKVPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPN 323 (520)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 323 (520)
++.++++|++++++.++.+||+++++.|++++++++..|+..+.++..|+.+.+.|++|+.+++.|.++++++.++.+|+
T Consensus 236 l~~p~hghvIL~~pspil~Y~ISStEvRcl~~v~g~~~Psi~~gem~~~mk~~v~PqiP~~lR~~F~~av~~g~irsmpn 315 (509)
T KOG1298|consen 236 LPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPGQKLPSIANGEMATYMKESVAPQIPEKLRESFLEAVDEGNIRSMPN 315 (509)
T ss_pred CCCCCcceEEecCCCcEEEEEecchheEEEEecCcccCCcccchhHHHHHHHhhCcCCCHHHHHHHHHHhhccchhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHH
Q 009994 324 RSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAG 403 (520)
Q Consensus 324 ~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~ 403 (520)
..+++....+.+++|+|||.++.||++|.||+.++.|+..|.++|...+++.+.+.+.+++++|+++|+|.+..++.++.
T Consensus 316 ~~mpa~~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~pl~dL~d~ekv~~~i~sFy~~RKp~s~tINtLa~ 395 (509)
T KOG1298|consen 316 SSMPATLNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKPLPDLSDAEKVSDYIKSFYWIRKPYSATINTLAN 395 (509)
T ss_pred ccCCCCcCCCCceEEEcccccccCCccCCceEeehhHHHHHHHHhccccccccHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCChhHHHHHHHHHHHHHhcCCCCchhHHHhhhcCCCCchhHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHH
Q 009994 404 ALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRMWIGARL 483 (520)
Q Consensus 404 ~~~~~~~~~~~~~~~~lr~~~~~~~~~g~~~~~~~~~l~~~~~~~P~~~~~h~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 483 (520)
++|++|.++++...+++|++||+|+.+|+.|.++|+.+++|++|+|.++..|||+|++|++++.+.++|.|.++|++.++
T Consensus 396 Aly~vf~as~dea~~~mr~gCfdYl~~GG~c~sGpv~lLsGlnP~Pl~Lv~HffAValy~i~~ll~p~PsP~riw~s~~i 475 (509)
T KOG1298|consen 396 ALYQVFVASTDEARKAMRKGCFDYLKRGGFCVSGPVALLSGLNPRPLSLVLHFFAVALYGIYRLLSPFPSPRRIWESLRI 475 (509)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHhcCCccccchHHHhcCCCCCchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcchhhHhHhhhhhhhcccCcccccccCCC
Q 009994 484 ISGASGIIFPIIKAEGVRQMFFPATIPAVYRAPP 517 (520)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (520)
+..||.||+|+|+.||+++|+||.|+|+|||+||
T Consensus 476 ~~~A~~vi~P~i~aEgv~qm~fp~~~~a~~~~~~ 509 (509)
T KOG1298|consen 476 LSLASSVIFPIIKAEGVSQMLFPANAAAYYRSYP 509 (509)
T ss_pred HHHHHHHHHHHHHHhhheeeecccchHhhhcCCC
Confidence 9999999999999999999999999999999997
No 2
>PLN02985 squalene monooxygenase
Probab=100.00 E-value=9.9e-79 Score=639.88 Aligned_cols=470 Identities=51% Similarity=0.902 Sum_probs=411.2
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEE
Q 009994 51 NGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFK 130 (520)
Q Consensus 51 ~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 130 (520)
....+||+|||||++|+++|+.|+++|++|+|+||+...+.+..|+.++|++.++|+++|++++++........++.++.
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~ 119 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYK 119 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEE
Confidence 46678999999999999999999999999999999877677888999999999999999999999887666777888877
Q ss_pred CCccccccCCCcC--CCCCccceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCe
Q 009994 131 DGKSTRLSYPLEK--FHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPL 208 (520)
Q Consensus 131 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~ 208 (520)
+|+.....++... ......++.++|.+|.+.|++.+.+.+++++.+++++++.++++.+.+|++.+.+|++.+++||+
T Consensus 120 ~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~gtvv~li~~~~~v~gV~~~~~dG~~~~~~AdL 199 (514)
T PLN02985 120 DGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPL 199 (514)
T ss_pred CCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEeeeEEEEEEcCCEEEEEEEEcCCCCEEEEECCE
Confidence 7765445555322 22234568899999999999999988899999999998888777777888887788877788999
Q ss_pred EEEecCCcchhhhhhcCCCCCCcccceeeEEeccCCCCCCceEEEecCCCcEEEEecCCCeEEEEEEeCCCCCCCCCchH
Q 009994 209 TIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLENCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQKVPSISNGE 288 (520)
Q Consensus 209 vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 288 (520)
||+|||.+|++|+.++.+.....+++.++.......+.++++++++++++++++||++++++++++.++.+..++...++
T Consensus 200 VVgADG~~S~vR~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ypi~~~~~~~~~~~~~~~~~~~~~~~ 279 (514)
T PLN02985 200 TVVCDGCYSNLRRSLNDNNAEVLSYQVGYISKNCRLEEPEKLHLIMSKPSFTMLYQISSTDVRCVFEVLPDNIPSIANGE 279 (514)
T ss_pred EEECCCCchHHHHHhccCCCcceeEeEEEEEccccCCCCCcceEEcCCCceEEEEEeCCCeEEEEEEEeCCCCCCcChhh
Confidence 99999999999999987655445556666655556667777888999999999999999999998888766666666778
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHhhhcC-CeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHHHHHHHh
Q 009994 289 MANYLKAMVAPQVPPELHEAFVSAVERG-NIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNL 367 (520)
Q Consensus 289 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da~~La~~ 367 (520)
..+++.+...|.+|+.+.+.+...++.. .+..+++...+...+.++|++|+|||||+++|++|||||+|++||..|++.
T Consensus 280 ~~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~~p~~~l~~~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~l 359 (514)
T PLN02985 280 MSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTKRMSATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRL 359 (514)
T ss_pred HHHHHHhccccccCHHHHHHHHhhcccccceeecCcccccccccCCCCEEEEecccccCCCCccccHhHHHHHHHHHHHH
Confidence 8888888777888888888877665543 578888887777778889999999999999999999999999999999999
Q ss_pred cCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhcCCCCchhHHHhhhcCCC
Q 009994 368 LKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNP 447 (520)
Q Consensus 368 L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g~~~~~~~~~l~~~~~~ 447 (520)
|....+..+..+..++|++|+++|+++++.++.+|+++|++|...+++..+.||+.||+|+.+|+.|.++|+++++|+.|
T Consensus 360 L~~~~~~~~~~~~~~aL~~y~~~Rk~r~~~i~~la~al~~~f~a~~~~~~~~l~~~~f~y~~~g~~~~~~~~~ll~~~~~ 439 (514)
T PLN02985 360 LQPLSNLGNANKVSEVIKSFYDIRKPMSATVNTLGNAFSQVLVASTDEAKEAMRQGCYDYLCSGGFRTSGMMALLGGMNP 439 (514)
T ss_pred hhhcccccchhHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCccccccHHHHcCCCC
Confidence 98765445667788999999999999999999999999999986667788999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHhhhcchhhHhHhhhhhhhcccCcccccccCCCCCC
Q 009994 448 RPLSLVLHFFAVAIYGVGRLLLPFPSPKRMWIGARLISGASGIIFPIIKAEGVRQMFFPATIPAVYRAPPVED 520 (520)
Q Consensus 448 ~P~~~~~h~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (520)
+|.+++.|||+|++|+++.++...+.|.++|++++++++||.||+|+||+|++++|+||.+.|+|||++|+.+
T Consensus 440 ~p~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~p~~~~e~~~~~~~~~~~~~~~~~~~~~~ 512 (514)
T PLN02985 440 RPLSLIYHLCAITLSSIGHLLSPFPSPLRIWHSLRLFGLALKMLVPHLKAEGVSQMLFPANAAAYRKSYMAAT 512 (514)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhHHHhhhhccccccccccccCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999864
No 3
>PTZ00367 squalene epoxidase; Provisional
Probab=100.00 E-value=4.5e-67 Score=553.42 Aligned_cols=440 Identities=44% Similarity=0.717 Sum_probs=366.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC-CCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEEC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV-TEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKD 131 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~-~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 131 (520)
.++||+||||||+|+++|+.|+++|++|+|+||++ ..+++..|+.++|++.++|+++|+++++++.... ..++.++..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l~~i~~~-~~~~~v~~~ 110 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECAEGIGMP-CFGYVVFDH 110 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhHhhcCcc-eeeeEEEEC
Confidence 46899999999999999999999999999999986 3455778889999999999999999998876654 667777664
Q ss_pred -CccccccCCCcCCCCCccceeecchHHHHHHHHHH--HcCCCeEEEeceEEEEEeeCC----eEEEEEEEeCCC-----
Q 009994 132 -GKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKA--ASLPNVRLEQGTVTSLLEENG----TIKGVQYKTKDG----- 199 (520)
Q Consensus 132 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~~v~i~~~~v~~~~~~~~----~v~gv~v~~~~g----- 199 (520)
|+.....++ ....++.+++++|.+.|++.+ ...+++++.+++|+++.++++ ++.+|+++..++
T Consensus 111 ~G~~~~i~~~-----~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~ 185 (567)
T PTZ00367 111 KGKQVKLPYG-----AGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLEGTVNSLLEEGPGFSERAYGVEYTEAEKYDVPE 185 (567)
T ss_pred CCCEEEecCC-----CCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEEeEEEEeccccCccCCeeEEEEEecCCcccccc
Confidence 443333332 233567789999999999988 445789998888988876554 377888766542
Q ss_pred ----------------cEEEEecCeEEEecCCcchhhhhhcCCC--CCCcccceeeEEeccCCCCCCceEEEecCCCcEE
Q 009994 200 ----------------QELRAYAPLTIVCDGCFSNLRRSLCKPK--VDVPSCFVGLVLENCQLPFANHGHVILADPSPIL 261 (520)
Q Consensus 200 ----------------~~~~~~ad~vV~AdG~~S~vR~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (520)
+..+++||+||+|||.+|++|+.++... ....+.+.++...+..+|.+++++++++++++++
T Consensus 186 ~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~~~~~~v~~g~~gpi~ 265 (567)
T PTZ00367 186 NPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKEQHGTVFLGKTGPIL 265 (567)
T ss_pred cccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCCCCeeEEEEcCCceEE
Confidence 1245779999999999999999997643 2334566777766677888888889999999999
Q ss_pred EEecCCCeEEEEEEeCCCCCCCCCchHHHHHHHHhcCCCCChhhHHHHHHhhh-cCCeEEecCCCCCCCCCCCCcEEEEc
Q 009994 262 FYPISSTEVRCLVDVPGQKVPSISNGEMANYLKAMVAPQVPPELHEAFVSAVE-RGNIRTMPNRSMPADPQPTPGALLMG 340 (520)
Q Consensus 262 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~grv~LvG 340 (520)
+||+++++.++++.++....++ .++..+++.+...|.+++++.+.+...+. .+.+..+++..+++.+|.++|++|+|
T Consensus 266 ~yPl~~~~~r~lv~~~~~~~p~--~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l~~~p~~~~p~~~~~~~gvvLIG 343 (567)
T PTZ00367 266 SYRLDDNELRVLVDYNKPTLPS--LEEQSEWLIEDVAPHLPENMRESFIRASKDTKRIRSMPNARYPPAFPSIKGYVGIG 343 (567)
T ss_pred EEEcCCCeEEEEEEecCCcCCC--hHHHHHHHHHhhcccCcHHHHHHHHHhhcccCCeEEeeHhhCCCccCCCCCEEEEE
Confidence 9999999988888776433222 23557777777778888888888866654 34678888888888888899999999
Q ss_pred cCCCCCCCCCCchhhHHHHHHHHHHHhcCccC-----CCCChHHHHHHHH----HHHHhhcchhHHHHHHHHHHHhhhcC
Q 009994 341 DAFNMRHPLTGGGMTVALSDIVVLRNLLKPLH-----DFNDAASLGRYLE----SFYTLRKPVASTINTLAGALYKVFSS 411 (520)
Q Consensus 341 DAAh~~~P~~G~G~n~al~Da~~La~~L~~~~-----~~~~~~~~~~~L~----~Y~~~R~~~~~~~~~~a~~~~~~~~~ 411 (520)
||||++||++|||||+||+||..|+++|..+. +..+..+++++|+ +|+++|++++..++.+++.++++|+.
T Consensus 344 DAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~d~~~v~~aL~~~~~~Y~~~Rk~~a~~i~~ls~aL~~lf~~ 423 (567)
T PTZ00367 344 DHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQNEMAEIEDAIQAAILSYARNRKTHASTINILSWALYSVFSS 423 (567)
T ss_pred cccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHhCh
Confidence 99999999999999999999999999997543 2333345677777 99999999999999999999999975
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCchhHHHhhhcCCCCchhHHHHHHHHHHHHHhhhccC---------------------
Q 009994 412 SPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAIYGVGRLLLP--------------------- 470 (520)
Q Consensus 412 ~~~~~~~~lr~~~~~~~~~g~~~~~~~~~l~~~~~~~P~~~~~h~~~~~l~~~~~~~~~--------------------- 470 (520)
..+|+.||+||++|+.|.++|++|++|+.|+|.+++.|||+|++|+++.++..
T Consensus 424 ------~~lr~~~~~y~~~gg~~~~~p~~ll~g~~~~p~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (567)
T PTZ00367 424 ------PALRDACLDYFSLGGECVTGPMSLLSGLDPSPGGLLFHYFSVALYGVLNLIMETGAYSIFGKQLSSFEKLTNVA 497 (567)
T ss_pred ------HHHHHHHHHHHhcCCccccccHHHHcCCCCCcHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 46999999999999999999999999999999999999999999999998876
Q ss_pred --CCCHHHHHHHHHHHHhhhcchhhHhHhh--hhhhhccc
Q 009994 471 --FPSPKRMWIGARLISGASGIIFPIIKAE--GVRQMFFP 506 (520)
Q Consensus 471 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 506 (520)
++.|.++|++..++++||.||+|+||+| ++.+++||
T Consensus 498 ~~~~~~~~~~~~~~~~~~a~~~~~p~~~~e~~~~~~~~~~ 537 (567)
T PTZ00367 498 SFFVDPERIKHALYLLGAATTIAAPLAKSEFVSLWRFIDP 537 (567)
T ss_pred cccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4679999999999999999999999999 77899999
No 4
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=100.00 E-value=6.6e-50 Score=375.66 Aligned_cols=273 Identities=57% Similarity=0.973 Sum_probs=259.1
Q ss_pred ecCeEEEecCCcchhhhhhcCCCCCCcccceeeEEeccCCCCCCceEEEecCCCcEEEEecCCCeEEEEEEeCCCCCCCC
Q 009994 205 YAPLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLENCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQKVPSI 284 (520)
Q Consensus 205 ~ad~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 284 (520)
.|+++|+|||.+|++|+.+....+...++++|+.+.++.+|.++++++++++++++++||++.+++|++++++.+..|+.
T Consensus 1 ~A~LtivaDG~~S~fRk~l~~~~~~v~S~fvGl~l~~~~lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~k~P~~ 80 (276)
T PF08491_consen 1 FAPLTIVADGCFSKFRKELSDNKPQVRSYFVGLILKDAPLPKPNHGHVILGKPGPILLYQISSNETRVLVDVPGPKLPSV 80 (276)
T ss_pred CCCEEEEecCCchHHHHhhcCCCCceeeeEEEEEEcCCCCCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeCCCccCCc
Confidence 38999999999999999999777888899999999999999999999999999999999999999999999998878888
Q ss_pred CchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHHHHH
Q 009994 285 SNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVL 364 (520)
Q Consensus 285 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da~~L 364 (520)
+.+++++++++.+.|++|+++++.|.++++.++++.+|+..+++......+++++|||+|++||++|+||+.|+.|+..|
T Consensus 81 ~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~rirsMPn~~lp~~~~~~~G~vllGDA~nmrHPLTGgGMTVAl~Dv~lL 160 (276)
T PF08491_consen 81 SNGELKEYLREVVAPQLPEELRPSFEKALEDGRIRSMPNSFLPASPNWKPGVVLLGDAANMRHPLTGGGMTVALNDVVLL 160 (276)
T ss_pred cchHHHHHHHHHHHhhchHHHHHHHHHHhccCCcceecccccCCCCCCCCCEEEEehhhcCcCCccccchhhHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhcCCCCchhHHHhhhc
Q 009994 365 RNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSG 444 (520)
Q Consensus 365 a~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g~~~~~~~~~l~~~ 444 (520)
++.|....+..+..++.+++++|+++|++....++.+|.++|.+|.++ ++....+|++||+|++.|+.|.++|+++++|
T Consensus 161 ~~lL~~~~dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF~a~-~~~l~~Lr~gcf~Yf~~GG~~~~gpv~LLsg 239 (276)
T PF08491_consen 161 RDLLSPIPDLSDTKAVLEALKKFHWKRKPLSSVINILAQALYSLFAAD-DDYLKALRQGCFKYFQLGGECVSGPVALLSG 239 (276)
T ss_pred HHHHhhhcCcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCCCCcchHHHhcc
Confidence 999998888888999999999999999999999999999999999987 4567799999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHhhhccCCC---CHHHHH
Q 009994 445 LNPRPLSLVLHFFAVAIYGVGRLLLPFP---SPKRMW 478 (520)
Q Consensus 445 ~~~~P~~~~~h~~~~~l~~~~~~~~~~~---~~~~~~ 478 (520)
+.++|.+++.|||+|++|+++.++.+.| .|.++|
T Consensus 240 l~p~P~~L~~Hff~Va~~~i~~~~~~~p~~~~P~~~~ 276 (276)
T PF08491_consen 240 LNPRPLVLFYHFFAVAFYAIYLNLKPRPWYGFPLALW 276 (276)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHcccCCcccCChhhC
Confidence 9999999999999999999999998877 566554
No 5
>PRK06126 hypothetical protein; Provisional
Probab=100.00 E-value=9.5e-48 Score=412.50 Aligned_cols=408 Identities=22% Similarity=0.258 Sum_probs=287.0
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhccccee--ceEEE
Q 009994 51 NGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQV--LGYAL 128 (520)
Q Consensus 51 ~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~--~~~~~ 128 (520)
.+.++||+||||||+||++|+.|+++|++|+|+||.+.....+++..++++++++|+++|+.+.+.+...... ....+
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~ 83 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAY 83 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceE
Confidence 3567899999999999999999999999999999998777778888999999999999999998877543211 11111
Q ss_pred E--ECCccc-cccCCCc------------CCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEE
Q 009994 129 F--KDGKST-RLSYPLE------------KFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGV 192 (520)
Q Consensus 129 ~--~~~~~~-~~~~~~~------------~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv 192 (520)
. ..|+.. .+.++.. .+......+.++|..+++.|.+.+.+.+++++++++ |+++.++++.+. +
T Consensus 84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~-v 162 (545)
T PRK06126 84 FTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVT-A 162 (545)
T ss_pred EecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEE-E
Confidence 1 122211 1111100 001122346788999999999999887789999997 999998887665 5
Q ss_pred EEEe-CCCcEEEEecCeEEEecCCcchhhhhhcCCCCCCcc--cceeeEEeccCC----CCCC-ceEEEecCCCcEEEEe
Q 009994 193 QYKT-KDGQELRAYAPLTIVCDGCFSNLRRSLCKPKVDVPS--CFVGLVLENCQL----PFAN-HGHVILADPSPILFYP 264 (520)
Q Consensus 193 ~v~~-~~g~~~~~~ad~vV~AdG~~S~vR~~l~~~~~~~~~--~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~p 264 (520)
++.+ .+|+..++++|+||+|||++|.||+.+++...+... ....+.+...++ +... ..+++++++....+++
T Consensus 163 ~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~ 242 (545)
T PRK06126 163 TVEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFNPDRRGVLVA 242 (545)
T ss_pred EEEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCCceEEEEECCCccEEEEE
Confidence 5554 567666789999999999999999999986654332 222333322122 1112 2233445555666777
Q ss_pred cCCCeEEEEEE-eC-CCCCCCCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccC
Q 009994 265 ISSTEVRCLVD-VP-GQKVPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDA 342 (520)
Q Consensus 265 ~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDA 342 (520)
..++. .|.+. ++ .......+.+++.+.+++.+.+.++.++ .....|......+++|++|||+|+|||
T Consensus 243 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----------~~~~~w~~~~~~a~~~~~gRv~L~GDA 311 (545)
T PRK06126 243 IDGRD-EWLFHQLRGGEDEFTIDDVDARAFVRRGVGEDIDYEV----------LSVVPWTGRRLVADSYRRGRVFLAGDA 311 (545)
T ss_pred ECCCC-eEEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCeEE----------EeecccchhheehhhhccCCEEEechh
Confidence 76543 44444 33 2222344566777888776653333221 122345566677889999999999999
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCC--------Ch
Q 009994 343 FNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSS--------PD 414 (520)
Q Consensus 343 Ah~~~P~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~--------~~ 414 (520)
||.++|++|||||+||+||.+|+|+|+.+. ++.+.+.+|++|+++|+|++..++..+..+...+... ++
T Consensus 312 AH~~~P~~GqG~N~gieDa~~La~~La~~~---~~~~~~~lL~~Y~~eR~p~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 388 (545)
T PRK06126 312 AHLFTPTGGYGMNTGIGDAVNLAWKLAAVL---NGWAGPALLDSYEAERRPIAARNTDYARRNADALGSFPVPPEIEDDG 388 (545)
T ss_pred hccCCCCcCcccchhHHHHHHHHHHHHHHH---cCCCcHHHHhhhHHHhhHHHHHHHHHHHHHHHHhcccccchhhccCC
Confidence 999999999999999999999999998764 2334568999999999999999999998777655421 12
Q ss_pred hHHHHHHHHHHHHH-------------hcCCCCchhHHHhhh------------cCCCCchhHHHHHHH------HHHHH
Q 009994 415 QARKEMRQACFDYL-------------SLGGVFSTGPVALLS------------GLNPRPLSLVLHFFA------VAIYG 463 (520)
Q Consensus 415 ~~~~~lr~~~~~~~-------------~~g~~~~~~~~~l~~------------~~~~~P~~~~~h~~~------~~l~~ 463 (520)
+....+|+.+.+++ ..|++|.++++.... ...++||.|+||+|+ +|++|
T Consensus 389 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~pG~r~ph~~l~~~~s~~dl~g 468 (545)
T PRK06126 389 PAGDAARRKVGDALSEHARQEFNSPGITLGYRYDGSPIIVPDGTPPPPDDPGVYVPSACPGGRAPHAWLSDGRSLYDLFG 468 (545)
T ss_pred hhHHHHHHHHHHHHhhccccccccceeeecceecCCceecCCCCCCCCCcccccccCCCCCcCCCCeeecCCcchHHhcC
Confidence 33345566654443 267778776554322 236799999999997 99999
Q ss_pred HhhhccCCCC
Q 009994 464 VGRLLLPFPS 473 (520)
Q Consensus 464 ~~~~~~~~~~ 473 (520)
.+|+|+.++.
T Consensus 469 ~~f~Ll~~~~ 478 (545)
T PRK06126 469 PGFTLLRFGD 478 (545)
T ss_pred CceEEEecCC
Confidence 9999998764
No 6
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=1.9e-46 Score=385.32 Aligned_cols=364 Identities=24% Similarity=0.310 Sum_probs=280.9
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccC-CCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD-VTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDG 132 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~-~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 132 (520)
.+||+||||||+||++|+.|+++|++|+|+||. .......++..++++++++|+++|+.+.+..........+.+...+
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 579999999999999999999999999999998 3444566899999999999999999777777666555555555544
Q ss_pred ccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEE
Q 009994 133 KSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIV 211 (520)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~ 211 (520)
. ....++.........++.++|..+.+.|.+.+.+.+++++++++ |+.+.++++.+. +++.. +|+ +++||+||+
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~-v~l~~-dG~--~~~a~llVg 156 (387)
T COG0654 82 R-RLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVT-VTLSF-DGE--TLDADLLVG 156 (387)
T ss_pred c-eeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceE-EEEcC-CCc--EEecCEEEE
Confidence 3 22344433444466788999999999999999999889999987 999999888765 65554 787 577999999
Q ss_pred ecCCcchhhhhhcCCCCCC-cccceeeEEe-ccCCCCCCceEEEecCCCcEEEEecCCCeEEEEEEeCCCC---CCCCCc
Q 009994 212 CDGCFSNLRRSLCKPKVDV-PSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQK---VPSISN 286 (520)
Q Consensus 212 AdG~~S~vR~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~~ 286 (520)
|||.+|.+|+.+++..... .+...+++.. ....|+......++.+.+++.++|++++.....+..+... ......
T Consensus 157 ADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (387)
T COG0654 157 ADGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEPHEGRAGERFTHAGPFALLPLPDNRSSVVWSLPPGPAEDLQGLSD 236 (387)
T ss_pred CCCCchHHHHhcCCCCccCCCCCceEEEEEeecCCCCCCeEEEEecCCCceEEEecCCCceeEEEECChhhHHHHhcCCH
Confidence 9999999999999433333 4444554443 2334666777778899999999999977677777665332 233444
Q ss_pred hHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHHHHHHH
Q 009994 287 GEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRN 366 (520)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da~~La~ 366 (520)
+...+.+.+.+....+ +...........+|+....+.+|.++||+|+|||||.+||++|||+|+||+||.+|++
T Consensus 237 ~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~ 310 (387)
T COG0654 237 EEFLRELQRRLGERDP------LGRVTLVSSRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAE 310 (387)
T ss_pred HHHHHHHHHhcCcccc------cceEEEccccccccccchhhhheecCcEEEEeeccccCCCccccchhhhhhhHHHHHH
Confidence 4444444443332211 1112233455678888889999999999999999999999999999999999999999
Q ss_pred hcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhcCC
Q 009994 367 LLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGG 432 (520)
Q Consensus 367 ~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g~ 432 (520)
+|.+....+.+ ..+|+.|+++|++++..++..++.+.+.|... .+....+|+..+.++...+
T Consensus 311 ~L~~~~~~~~~---~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~-~~~~~~~r~~~l~~~~~~~ 372 (387)
T COG0654 311 ALAAAPRPGAD---AAALAAYEARRRPRAEAIQKLSRALGRLFSAD-GPFARFLRNLGLRLLDRLP 372 (387)
T ss_pred HHHHHhhcCcc---HHHHHHHHHhhhhHHHHHHHHHHHHhhhhccC-CcHHHHHHHHHHHhhccCc
Confidence 99976421111 78999999999999999999999999999876 6778899999988876544
No 7
>PRK08013 oxidoreductase; Provisional
Probab=100.00 E-value=5.1e-46 Score=384.24 Aligned_cols=365 Identities=20% Similarity=0.231 Sum_probs=256.7
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCC------ceeeeeeccchHHHHHhcCchhHHhhcccceeceEE
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD------RIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYA 127 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~------~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~ 127 (520)
++||+||||||+|+++|+.|+++|++|+|+||.+.... ..++..++++++++|+++|+++.+.........+..
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 58999999999999999999999999999999875332 125567899999999999999988765444555666
Q ss_pred EEECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEec
Q 009994 128 LFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYA 206 (520)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~a 206 (520)
++.........+.....+....++.++|..|++.|.+.+.+.+++++++++ |++++++++. |++...+|++ ++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~---v~v~~~~g~~--i~a 157 (400)
T PRK08013 83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE---AFLTLKDGSM--LTA 157 (400)
T ss_pred EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe---EEEEEcCCCE--EEe
Confidence 665432222223222222233467899999999999999988789999987 9999877764 4555667764 679
Q ss_pred CeEEEecCCcchhhhhhcCCCCCCcccceeeEEe-ccCCCCCCceEEEecCCCcEEEEecCCCe-EEEEEEeCCCCCC--
Q 009994 207 PLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTE-VRCLVDVPGQKVP-- 282 (520)
Q Consensus 207 d~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~-- 282 (520)
|+||+|||.+|.||+.++++.....+...++... ....+.......++..++++.++|..++. .++++..+.+..+
T Consensus 158 ~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~ 237 (400)
T PRK08013 158 RLVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHDAVARQVFHGDGILAFLPLSDPHLCSIVWSLSPEEAQRM 237 (400)
T ss_pred eEEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccCCCCCEEEEEEcCCCCEEEEECCCCCeEEEEEEcCHHHHHHH
Confidence 9999999999999999998765554444444322 12223333344556667788999997654 5666665532111
Q ss_pred -CCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHH
Q 009994 283 -SISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDI 361 (520)
Q Consensus 283 -~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da 361 (520)
....+++.+.+...+. +.+... .+ ......++.....+++|.+|||+|+|||||.++|++|||||+||+||
T Consensus 238 ~~~~~~~~~~~l~~~~~----~~l~~~---~~-~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gi~Da 309 (400)
T PRK08013 238 QQAPEEEFNRALAIAFD----NRLGLC---EL-ESERQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDA 309 (400)
T ss_pred HcCCHHHHHHHHHHHHh----HhhCce---Ee-cCCccEEecceeecccccCCcEEEEechhhcCCccccCchhhhHHHH
Confidence 1122233333322111 100000 00 01123456666678899999999999999999999999999999999
Q ss_pred HHHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhcCC
Q 009994 362 VVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGG 432 (520)
Q Consensus 362 ~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g~ 432 (520)
.+|+++|......+.......+|++|+++|++++..++..++.+.++|..+ ++....+|+..+..+..-+
T Consensus 310 ~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~l~~~~-~~~~~~~R~~~l~~~~~~~ 379 (400)
T PRK08013 310 AELIAELRRLHRQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFRDLFAGN-NPAKKLLRDIGLKLADTLP 379 (400)
T ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhhCH
Confidence 999999975421111111235899999999999999999999999999765 6778888998888765433
No 8
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=100.00 E-value=1.6e-45 Score=381.49 Aligned_cols=378 Identities=22% Similarity=0.244 Sum_probs=268.7
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC-CCC----CceeeeeeccchHHHHHhcCchhHHhhcccceeceEEE
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV-TEP----DRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYAL 128 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~-~~~----~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 128 (520)
.+||+||||||+|+++|+.|+++|++|+|+|+.. ... ...++..++++++++|+++|+++.+.+....+...+.+
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 5899999999999999999999999999999963 211 23467789999999999999999887654445566677
Q ss_pred EECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecC
Q 009994 129 FKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAP 207 (520)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad 207 (520)
+.........++.........++.+++..+.+.|.+.+.+.++++++.++ |+++.++++. +.+...+|++ ++||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~---~~v~~~~g~~--~~a~ 158 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE---AWLTLDNGQA--LTAK 158 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe---EEEEECCCCE--EEeC
Confidence 65533222333322222334577888999999999999887789999887 9999877764 4555667764 5699
Q ss_pred eEEEecCCcchhhhhhcCCCCCCcccceeeEEe-ccCCCCCCceEEEecCCCcEEEEecCCC-eEEEEEEeCCCCC---C
Q 009994 208 LTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISST-EVRCLVDVPGQKV---P 282 (520)
Q Consensus 208 ~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~---~ 282 (520)
+||+|||.+|.+|+.++++.....+...++... ....++....+.++++++++.++|+.++ ..++.+..+.... .
T Consensus 159 lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lp~~~~~~~~~~w~~~~~~~~~~~ 238 (405)
T PRK08850 159 LVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVDPHNSVARQIFTPQGPLAFLPMSEPNMSSIVWSTEPLRAEALL 238 (405)
T ss_pred EEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccCCCCCEEEEEEcCCCceEEEECCCCCeEEEEEECCHHHHHHHH
Confidence 999999999999999988755444433333332 2223334445667888899999999864 4566666553211 1
Q ss_pred CCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHHH
Q 009994 283 SISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 362 (520)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da~ 362 (520)
..+.++..+.+.+.+.+.+.. + + .......+|.....+.+|.++||+|+|||||.++|+.|||+|+||+||.
T Consensus 239 ~~~~~~~~~~l~~~~~~~~~~-~-----~--~~~~~~~~pl~~~~~~~~~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~ 310 (405)
T PRK08850 239 AMSDEQFNKALTAEFDNRLGL-C-----E--VVGERQAFPLKMRYARDFVRERVALVGDAAHTIHPLAGQGVNLGLLDAA 310 (405)
T ss_pred cCCHHHHHHHHHHHHhhhhCc-E-----E--EcccccEEecceeeccccccCcEEEEEhhhhcCCccccccHHHHHHHHH
Confidence 222334444443322211100 0 0 0112235666666778999999999999999999999999999999999
Q ss_pred HHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhcCCCCchhHHHhh
Q 009994 363 VLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALL 442 (520)
Q Consensus 363 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g~~~~~~~~~l~ 442 (520)
+|+|+|......+.+.....+|++|+++|++++..++..++.+.++|+.+ ++....+|+..+..+..-+....-.+...
T Consensus 311 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~-~~~~~~~R~~~l~~~~~~~~~k~~~~~~~ 389 (405)
T PRK08850 311 SLAQEILALWQQGRDIGLKRNLRGYERWRKAEAAKMIAAMQGFRDLFSGS-NPAKKLVRGIGMSLAGQLPGAKDEIMKRA 389 (405)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 99999976432222223567999999999999999999999999999876 56678899998887765444333333333
Q ss_pred hcC
Q 009994 443 SGL 445 (520)
Q Consensus 443 ~~~ 445 (520)
.++
T Consensus 390 ~g~ 392 (405)
T PRK08850 390 LGL 392 (405)
T ss_pred hCC
Confidence 444
No 9
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=100.00 E-value=2.2e-45 Score=393.94 Aligned_cols=403 Identities=19% Similarity=0.177 Sum_probs=274.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEEC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKD 131 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 131 (520)
+.++||+||||||+||++|+.|+++|++|+|+||.+.....+++..++++++++|+++|+.+.+.+...... ....+..
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~-~~~~~~~ 99 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWN-VGKVFLR 99 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceee-ceeEEeC
Confidence 456899999999999999999999999999999998766677788999999999999999988876443222 2222222
Q ss_pred CccccccCCCcC-C-CCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCe
Q 009994 132 GKSTRLSYPLEK-F-HADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPL 208 (520)
Q Consensus 132 ~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~ 208 (520)
++. ...++... . ...+....++|..+++.|.+.+.+.+++++++++ ++++.++++.+. ++++..+|+ .+++||+
T Consensus 100 ~~~-~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~-v~~~~~~g~-~~i~ad~ 176 (547)
T PRK08132 100 DEE-VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVT-LTVETPDGP-YTLEADW 176 (547)
T ss_pred CCe-EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEE-EEEECCCCc-EEEEeCE
Confidence 211 11222111 0 1112234578899999999999888789999887 999988877644 555554554 4578999
Q ss_pred EEEecCCcchhhhhhcCCCCCCcccceeeEEe-ccCCCCCCceEEEecC---C-CcEEEEecCCCeEEEEEEeCCCC--C
Q 009994 209 TIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILAD---P-SPILFYPISSTEVRCLVDVPGQK--V 281 (520)
Q Consensus 209 vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~-~~~~~~p~~~~~~~~~~~~~~~~--~ 281 (520)
||+|||.+|.+|+.++++..+.......++.. ....+.+.....++.+ + ..+++.+..++.+++.+...... .
T Consensus 177 vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (547)
T PRK08132 177 VIACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKADFPTERWFWFDPPFHPGQSVLLHRQPDNVWRIDFQLGWDADPE 256 (547)
T ss_pred EEECCCCCcHHHHHcCCCCCCccccceEEEEEEEecCCCCCeeeEEEeccCCCCcEEEEEeCCCCeEEEEEecCCCCCch
Confidence 99999999999999998765544332222221 1111122223344432 2 34455566666555554433211 1
Q ss_pred CCCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHH
Q 009994 282 PSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDI 361 (520)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da 361 (520)
...+.+++.+.+++.+.+..+ .+......|+.....+++|++|||+|+|||||.++|++|||||+||+||
T Consensus 257 ~~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~DA 326 (547)
T PRK08132 257 AEKKPENVIPRVRALLGEDVP----------FELEWVSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARGANSGIQDA 326 (547)
T ss_pred hhcCHHHHHHHHHHHcCCCCC----------eeEEEEEeeeeeeeeecccccccEEEEecccccCCCcccccccchHHHH
Confidence 122344555555554431110 0001223455666778899999999999999999999999999999999
Q ss_pred HHHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHH-------------
Q 009994 362 VVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYL------------- 428 (520)
Q Consensus 362 ~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~------------- 428 (520)
.+|+|+|+.+. .+.+.+.+|++|+++|+|++..+...+..+..++... ++....+|+..+..+
T Consensus 327 ~~LawkLa~vl---~g~~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 402 (547)
T PRK08132 327 DNLAWKLALVL---RGRAPDSLLDSYASEREFAADENIRNSTRSTDFITPK-SPVSRLFRDAVLRLARDHPFARRLVNSG 402 (547)
T ss_pred HHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CHHHHHHHHHHHhhhcccHHHHHHHhcc
Confidence 99999998764 2344678999999999999999999888888877654 444555666544321
Q ss_pred --hcCCCCchhHHHhhh----cCCCCchhHHHHHHH---------HHHHHHhhhccCCC
Q 009994 429 --SLGGVFSTGPVALLS----GLNPRPLSLVLHFFA---------VAIYGVGRLLLPFP 472 (520)
Q Consensus 429 --~~g~~~~~~~~~l~~----~~~~~P~~~~~h~~~---------~~l~~~~~~~~~~~ 472 (520)
..+..|.++++...+ ...++||.|+||.|+ .|++|.+|+|+.+.
T Consensus 403 ~~~~~~~y~~~~~~~~~~~~~~~~~~pG~r~p~~~~~~~~~~~~l~dl~g~~f~ll~~~ 461 (547)
T PRK08132 403 RLSVPAVYADSPLNTPDGDAFAGGPVPGAPAPDAPVRADGEPGWLLDLLGGGFTLLLFG 461 (547)
T ss_pred ccccCcccCCCCCCCCcccccCCCCCCCCCCCCCcccCCCCceEHHHhcCCCEEEEEec
Confidence 224556555443211 235779999999875 78899999998654
No 10
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=100.00 E-value=1.4e-45 Score=394.35 Aligned_cols=404 Identities=23% Similarity=0.219 Sum_probs=283.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEEC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKD 131 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 131 (520)
+.++||+||||||+||++|+.|+++|++|+|+||.+.....+++..++++++++|+++|+.+.+.+... ...++.++..
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~-~~~~~~~~~~ 86 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTT-PNHGMRFLDA 86 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcc-cCCceEEEcC
Confidence 456899999999999999999999999999999998777777888999999999999999988876432 3344555442
Q ss_pred CccccccCCCcC--CCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCe
Q 009994 132 GKSTRLSYPLEK--FHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPL 208 (520)
Q Consensus 132 ~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~ 208 (520)
.......++... ....+....++|..+++.|++.+.+.+++++++++ |+++++++++++ |++++.+|+..+++||+
T Consensus 87 ~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~-v~~~~~~G~~~~i~ad~ 165 (538)
T PRK06183 87 KGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVT-VTLTDADGQRETVRARY 165 (538)
T ss_pred CCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEE-EEEEcCCCCEEEEEEEE
Confidence 222112222100 00112335688999999999999887789999997 999998887654 55555567666789999
Q ss_pred EEEecCCcchhhhhhcCCCCCCcccceeeEEe--cc-CCCCCCceEEEecCCCcEEEEecCCCeEEEEEEeCCC-CCCCC
Q 009994 209 TIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE--NC-QLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQ-KVPSI 284 (520)
Q Consensus 209 vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~ 284 (520)
||+|||.+|.+|+.+++...+..+....+.+. .. ..........++.+++++.++|+.++..+|.+.+..+ .....
T Consensus 166 vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~ 245 (538)
T PRK06183 166 VVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRWEFMLLPGETEEQL 245 (538)
T ss_pred EEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEEEECCCCCEEEEEcCCCeEEEEEEeCCCCChhhc
Confidence 99999999999999987655444333333322 11 1112223456677788899999998888887765422 22222
Q ss_pred -CchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHHHH
Q 009994 285 -SNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVV 363 (520)
Q Consensus 285 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da~~ 363 (520)
..+.+.+++..+.. .+... +......+......+.+|++|||+|+|||||.++|++|||||+||+||.+
T Consensus 246 ~~~~~~~~~l~~~~~--~~~~~--------~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~ 315 (538)
T PRK06183 246 ASPENVWRLLAPWGP--TPDDA--------ELIRHAVYTFHARVADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAAN 315 (538)
T ss_pred CCHHHHHHHHHhhCC--CCcce--------EEEEEEeeeEccEEhhhhccCCEEEEechhhcCCCccccchhhhHHHHHH
Confidence 33445554443210 01110 00112334444556789999999999999999999999999999999999
Q ss_pred HHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhcCC-----------
Q 009994 364 LRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGG----------- 432 (520)
Q Consensus 364 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g~----------- 432 (520)
|+|+|+.+. ++.+.+.+|++|+++|+|++..++..+..+.+++... ++....+|+..+..+...+
T Consensus 316 La~kLa~~~---~g~~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~~~~~~-~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~ 391 (538)
T PRK06183 316 LAWKLAAVL---RGRAGDALLDTYEQERRPHARAMIDLAVRLGRVICPT-DRLAAALRDAVLRALNYLPPLKRYVLEMRF 391 (538)
T ss_pred HHHHHHHHH---cCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHhhhcCcchhhhhhhccC
Confidence 999998653 2234578999999999999999999999999998765 6777888998776543221
Q ss_pred ----CCchhHHHhh-hcCCCCchhHHHHHHH----------HHHHHHhhhccCC
Q 009994 433 ----VFSTGPVALL-SGLNPRPLSLVLHFFA----------VAIYGVGRLLLPF 471 (520)
Q Consensus 433 ----~~~~~~~~l~-~~~~~~P~~~~~h~~~----------~~l~~~~~~~~~~ 471 (520)
.|..+++.-. ....+.||.++|+.+. .|+.|.+|+|+.+
T Consensus 392 ~~~~~y~~~~~~~~~~~~~~~~G~~~p~~~~~~~~~~~~~~d~~~~~~~~ll~~ 445 (538)
T PRK06183 392 KPMPRLTGGAVVREGEAKHSPVGTLFPQPRVELGGGDRGLLDDVLGPGFAVLGW 445 (538)
T ss_pred CCCCcccccccccCcccCCCCcccCcCCCeeEcCCCCcccchhccCCceEEEEe
Confidence 1222211000 0124567888888643 4577888988854
No 11
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=100.00 E-value=2e-44 Score=376.04 Aligned_cols=371 Identities=18% Similarity=0.196 Sum_probs=266.1
Q ss_pred CcEEEECCCHHHHHHHHHHhh----CCCeEEEEccCCCCCC------------ceeeeeeccchHHHHHhcCchhHHhhc
Q 009994 55 TDVIIVGAGVAGAALAHTLGK----DGRRVHVIERDVTEPD------------RIVGELLQPGGYLKLVELGLEDCVEEI 118 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~----~G~~V~v~Er~~~~~~------------~~~g~~l~~~~~~~l~~lGl~~~l~~~ 118 (520)
|||+||||||+|+++|+.|++ +|++|+|+||++.+.. ..++..++++++++|+++|+++.+.+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 699999999999999999999 8999999999643321 246788999999999999999998765
Q ss_pred ccceeceEEEEECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCC--CeEEEece-EEEEEee----CCeEEE
Q 009994 119 DAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLP--NVRLEQGT-VTSLLEE----NGTIKG 191 (520)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~v~i~~~~-v~~~~~~----~~~v~g 191 (520)
.......+.++.........++... ...+.++.++|..+++.|.+.+.+.+ ++++++++ |+++..+ ++...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~ 159 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDN-GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNW 159 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCC-CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCc
Confidence 4445555555543322223333221 22345778999999999999998886 69999987 8888742 111124
Q ss_pred EEEEeCCCcEEEEecCeEEEecCCcchhhhhhcCCCCCCcccceeeEEe-ccC-CCCCCceEEEecCCCcEEEEecCCCe
Q 009994 192 VQYKTKDGQELRAYAPLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQ-LPFANHGHVILADPSPILFYPISSTE 269 (520)
Q Consensus 192 v~v~~~~g~~~~~~ad~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~ 269 (520)
|++...+|++ ++||+||+|||++|.+|+.+++...+..+...+++.. ... .+++...+.++.+++++.++|+.++.
T Consensus 160 v~v~~~~g~~--i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~~g~~~~lPl~~~~ 237 (437)
T TIGR01989 160 VHITLSDGQV--LYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLPTGPIALLPLPDNN 237 (437)
T ss_pred eEEEEcCCCE--EEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECCCCCEEEeECCCCC
Confidence 6677777864 6799999999999999999998876665544444332 111 23334455667788999999999888
Q ss_pred EEEEEEeCCCC---CCCCCchHHHHHHHHhcC---CCCCh---------h-----------------hHHHHHHhhhcCC
Q 009994 270 VRCLVDVPGQK---VPSISNGEMANYLKAMVA---PQVPP---------E-----------------LHEAFVSAVERGN 317 (520)
Q Consensus 270 ~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~---~~~~~---------~-----------------~~~~~~~~~~~~~ 317 (520)
.++++..+... ....+.+++.+.+.+.+. ...|. . ....+ ..+....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 316 (437)
T TIGR01989 238 STLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSKSCFQVPPRV-IGVVDKS 316 (437)
T ss_pred EEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccCchh-heeeccc
Confidence 88888765322 113344555555544330 00000 0 00000 0111122
Q ss_pred eEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHH
Q 009994 318 IRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVAST 397 (520)
Q Consensus 318 i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~ 397 (520)
...+|+....+.+|..+||+|+|||||.+||++|||||+||+||.+|+|+|......+.+.....+|++|+++|++++..
T Consensus 317 ~~~~~~~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~ 396 (437)
T TIGR01989 317 RAAFPLGLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISSLKPYERERYAKNVV 396 (437)
T ss_pred ceeEEecccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH
Confidence 35677777788899999999999999999999999999999999999999986532222222356999999999999999
Q ss_pred HHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhc
Q 009994 398 INTLAGALYKVFSSSPDQARKEMRQACFDYLSL 430 (520)
Q Consensus 398 ~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~ 430 (520)
++.+++.+.++|..+ .+....+|+..+..+..
T Consensus 397 v~~~t~~l~~l~~~~-~~~~~~~R~~~l~~~~~ 428 (437)
T TIGR01989 397 LLGLVDKLHKLYATD-FPPVVALRTFGLNLTNY 428 (437)
T ss_pred HHHHHHHHHHHHcCC-ccHHHHHHHHHHHHhhh
Confidence 999999999999876 56678889988876654
No 12
>PRK08244 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-44 Score=383.83 Aligned_cols=394 Identities=19% Similarity=0.196 Sum_probs=274.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCc
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGK 133 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 133 (520)
++||+||||||+||++|+.|+++|++|+|+||.+.....+++..++++++++|+++|+.+.+.+... ......+.....
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~-~~~~~~~~~~~~ 80 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGR-KLPSGHFAGLDT 80 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcc-cccceEEecccc
Confidence 4899999999999999999999999999999998777778899999999999999999988876432 222222221111
Q ss_pred cccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEe
Q 009994 134 STRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVC 212 (520)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~A 212 (520)
...+...+ ...+..+.++|..+++.|.+.+++. ++++++++ ++++.++++++. +++.+.+|+ .+++||+||+|
T Consensus 81 --~~~~~~~~-~~~~~~~~i~q~~le~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~v~-v~~~~~~g~-~~i~a~~vVgA 154 (493)
T PRK08244 81 --RLDFSALD-TSSNYTLFLPQAETEKVLEEHARSL-GVEIFRGAEVLAVRQDGDGVE-VVVRGPDGL-RTLTSSYVVGA 154 (493)
T ss_pred --cCCcccCC-CCCCcEEEecHHHHHHHHHHHHHHc-CCeEEeCCEEEEEEEcCCeEE-EEEEeCCcc-EEEEeCEEEEC
Confidence 11111111 1123456789999999999999887 79999887 999988877654 555555563 45789999999
Q ss_pred cCCcchhhhhhcCCCCCCcccceeeEEe-ccCCCCCCceEEEecCCCcEEEEecCCCeEEEEEEeCCCC----CCCCCch
Q 009994 213 DGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQK----VPSISNG 287 (520)
Q Consensus 213 dG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~~~~ 287 (520)
||.+|.+|+.++++..+....+.++... ....+.+.....++.+.++++++|++++.+++.+..+... ....+.+
T Consensus 155 DG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (493)
T PRK08244 155 DGAGSIVRKQAGIAFPGTDATFTAMLGDVVLKDPPPSSVLSLCTREGGVMIVPLSGGIYRVLIIDPERPQVPKDEPVTLE 234 (493)
T ss_pred CCCChHHHHhcCCCccCCCcceEEEEEEEEecCCCCcceeEEEeCCceEEEEECCCCeEEEEEEcCCcccccCCCCCCHH
Confidence 9999999999998765555444444322 1111222234456677788999999988877776544211 1123455
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHHHHHHHh
Q 009994 288 EMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNL 367 (520)
Q Consensus 288 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da~~La~~ 367 (520)
++.+.+.+.....+.. .....+..++.....+++|++|||+|+|||||.++|++|||||+||+||.+|+|+
T Consensus 235 ~~~~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~ 305 (493)
T PRK08244 235 ELKTSLIRICGTDFGL---------NDPVWMSRFGNATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWK 305 (493)
T ss_pred HHHHHHHHhhCCCCCc---------CCeeEEEecccceeeHhhhccCcEEEeecceeccCCccccccccchhhHHHHHHH
Confidence 6666665544322110 0111234556666678899999999999999999999999999999999999999
Q ss_pred cCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHh--------------cCCC
Q 009994 368 LKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLS--------------LGGV 433 (520)
Q Consensus 368 L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~--------------~g~~ 433 (520)
|+.+. ++.+.+.+|++|+++|+|++..++..++.+..++..+ +....+|+.+...+. .+..
T Consensus 306 La~~l---~g~~~~~lL~~Ye~eR~~~~~~~~~~~~~~~~~~~~~--~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (493)
T PRK08244 306 LAAAI---KGWAPDWLLDSYHAERHPVGTALLRNTEVQTKLFDFT--RPGLALRSMLSDLLGFPEVNRYLAGQISALDVH 380 (493)
T ss_pred HHHHH---cCCCCchhhhhhHHHHHHHHHHHHHHhHHHHHHhcCC--chhHHHHHHHHHHhcchHHHHHHHHHHhcCCcc
Confidence 98764 2234467999999999999999998888888887543 345556665433321 2223
Q ss_pred CchhHHHhhhcCCCCchhHHHHHHH----------HHHHHHh-hhccCC
Q 009994 434 FSTGPVALLSGLNPRPLSLVLHFFA----------VAIYGVG-RLLLPF 471 (520)
Q Consensus 434 ~~~~~~~l~~~~~~~P~~~~~h~~~----------~~l~~~~-~~~~~~ 471 (520)
|..++ .....+.||.|+||.++ .|+++.+ |+|+.+
T Consensus 381 Y~~~~---~~~~~~~~G~r~p~~~~~~~~~~~~~l~~~~~~~~~~ll~~ 426 (493)
T PRK08244 381 YEPDA---EMPPHPLNGKRLPDLELTLSDGESERLYSLLHKGTFLLLSF 426 (493)
T ss_pred cCCCC---ccCCCCCCCCCCCCcceecCCCCceeHHHhhcCCeEEEEEe
Confidence 32211 00124678999999865 5666543 777754
No 13
>PRK06184 hypothetical protein; Provisional
Probab=100.00 E-value=1.6e-44 Score=383.53 Aligned_cols=395 Identities=21% Similarity=0.196 Sum_probs=269.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDG 132 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 132 (520)
+++||+||||||+||++|+.|+++|++|+|+||.+.....+++..++++++++|+++|+.+.+.+.... .....++..+
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~-~~~~~~~~~~ 80 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGL-YPPMRIYRDD 80 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCcc-ccceeEEeCC
Confidence 358999999999999999999999999999999987777788999999999999999999888764432 2233334322
Q ss_pred cc-ccccCCC--cC--CCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEec
Q 009994 133 KS-TRLSYPL--EK--FHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYA 206 (520)
Q Consensus 133 ~~-~~~~~~~--~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~a 206 (520)
.. ....+.. .. ....+.+..++|..+++.|.+.+.+. ++++++++ ++++.++++.++ +++...++ ..+++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~-gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~-~~~i~a 157 (502)
T PRK06184 81 GSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAEL-GHRVEFGCELVGFEQDADGVT-ARVAGPAG-EETVRA 157 (502)
T ss_pred ceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHC-CCEEEeCcEEEEEEEcCCcEE-EEEEeCCC-eEEEEe
Confidence 21 1111110 00 01112346788999999999999887 79999997 999988877644 44433233 235789
Q ss_pred CeEEEecCCcchhhhhhcCCCCCCcccc-eeeEEeccCCC--CCCceEEEecCC-CcEEEEecCCCe-EEEEEEeCCCCC
Q 009994 207 PLTIVCDGCFSNLRRSLCKPKVDVPSCF-VGLVLENCQLP--FANHGHVILADP-SPILFYPISSTE-VRCLVDVPGQKV 281 (520)
Q Consensus 207 d~vV~AdG~~S~vR~~l~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~p~~~~~-~~~~~~~~~~~~ 281 (520)
|+||+|||++|.+|+.+++...+..... ..++.. ..++ .....+.+..++ +.+.++|+.+++ +++.+..+.+..
T Consensus 158 ~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 236 (502)
T PRK06184 158 RYLVGADGGRSFVRKALGIGFPGETLGIDRMLVAD-VSLTGLDRDAWHQWPDGDMGMIALCPLPGTDLFQIQAPLPPGGE 236 (502)
T ss_pred CEEEECCCCchHHHHhCCCCcccCcCCCceEEEEE-EEeecCCCcceEEccCCCCcEEEEEEccCCCeEEEEEEcCCCcc
Confidence 9999999999999999998766554332 333221 1111 122334444444 677888987653 444444443333
Q ss_pred CCCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHH
Q 009994 282 PSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDI 361 (520)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da 361 (520)
...+.+++.+.+....... +..+ ........|+.....+++|++|||+|+|||||.++|++|||||+||+||
T Consensus 237 ~~~~~~~~~~~l~~~~~~~-~~~~-------~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA 308 (502)
T PRK06184 237 PDLSADGLTALLAERTGRT-DIRL-------HSVTWASAFRMNARLADRYRVGRVFLAGDAAHVHPPAGGQGLNTSVQDA 308 (502)
T ss_pred CCCCHHHHHHHHHHhcCCC-Ccce-------eeeeeeeccccceeEhhhhcCCcEEEeccccccCCCcccccccchHHHH
Confidence 4456677777777654421 1010 0011233455555667889999999999999999999999999999999
Q ss_pred HHHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhcCCCCchhHHHh
Q 009994 362 VVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVAL 441 (520)
Q Consensus 362 ~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g~~~~~~~~~l 441 (520)
.+|+|+|+.+. ++ +.+.+|++|+.+|+|++..++..+..+++.+... . ..|.. .....+..|..+++..
T Consensus 309 ~~LawkLa~vl---~g-~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~~~-~----~~~~~--~~~~~~~~y~~~~~~~ 377 (502)
T PRK06184 309 YNLGWKLAAVL---AG-APEALLDTYEEERRPVAAAVLGLSTELLDAIKRG-D----MRRGR--DVQQLDLGYRGSSLAV 377 (502)
T ss_pred HHHHHHHHHHH---cC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-H----hhccc--chhcceeecCCCcccC
Confidence 99999998764 22 4577999999999999999999998888776432 1 11111 1122344455444432
Q ss_pred hh---cCCCCchhHHHHHHH----------HHHHH-HhhhccCC
Q 009994 442 LS---GLNPRPLSLVLHFFA----------VAIYG-VGRLLLPF 471 (520)
Q Consensus 442 ~~---~~~~~P~~~~~h~~~----------~~l~~-~~~~~~~~ 471 (520)
.. ...++||.|+||.|+ .|+++ .+|+|+.+
T Consensus 378 ~~~~~~~~~~~G~r~p~~~~~~~~~~~~~l~d~~~~~~~~ll~~ 421 (502)
T PRK06184 378 DGPERTGGLRAGDRAPDAPLLGAAGQPTRLFDLFRGPHWTLLAF 421 (502)
T ss_pred CCcccCCCCCCcCCCCCchhccCCCceeeHHHhhCCCcEEEEEe
Confidence 11 135789999999986 46664 56887753
No 14
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=5.5e-44 Score=370.19 Aligned_cols=376 Identities=19% Similarity=0.257 Sum_probs=259.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCC--------CCceeeeeeccchHHHHHhcCchhHHhhcccceece
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTE--------PDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLG 125 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~--------~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~ 125 (520)
++||+||||||+|+++|+.|+++|++|+|+||.+.. ....++..++++++++|+++|+++.+.+....+...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 479999999999999999999999999999998621 123456789999999999999998886543334445
Q ss_pred EEEEECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEE
Q 009994 126 YALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRA 204 (520)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~ 204 (520)
+.++.........++.........++.+++..+.+.|.+.+.+. ++++++++ +++++++++. +++...+|++ +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~---v~v~~~~g~~--~ 155 (405)
T PRK05714 82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDS-DIGLLANARLEQMRRSGDD---WLLTLADGRQ--L 155 (405)
T ss_pred EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcC-CCEEEcCCEEEEEEEcCCe---EEEEECCCCE--E
Confidence 55554332222333322222234467889999999999998886 79999886 9999887764 4455667754 5
Q ss_pred ecCeEEEecCCcchhhhhhcCCCCCCcccceeeEEe-ccCCCCCCceEEEecCCCcEEEEecCCCe----EEEEEEeCCC
Q 009994 205 YAPLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTE----VRCLVDVPGQ 279 (520)
Q Consensus 205 ~ad~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~~~~~~~~~~ 279 (520)
+||+||+|||.+|.+|+.++++.....+...+++.. ....++....+.++.+.+++.++|+.++. ..+.+..+.+
T Consensus 156 ~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~ 235 (405)
T PRK05714 156 RAPLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSEPHRATAWQRFTDDGPLAFLPLERDGDEHWCSIVWSTTPE 235 (405)
T ss_pred EeCEEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcCCCCCCEEEEEcCCCCCeEEeeCCCCCCCCeEEEEEECCHH
Confidence 699999999999999999987654444433433332 11222233334456778899999996432 2233443321
Q ss_pred CC---CCCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhH
Q 009994 280 KV---PSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTV 356 (520)
Q Consensus 280 ~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~ 356 (520)
.. ...+.+++.+.+.+.+.+.+. +.........+++....+.+|.++||+|+|||||.++|+.|||+|+
T Consensus 236 ~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~rv~LlGDAAH~~~P~~GQG~n~ 307 (405)
T PRK05714 236 EAERLMALDDDAFCAALERAFEGRLG--------EVLSADPRLCVPLRQRHAKRYVEPGLALIGDAAHTIHPLAGQGVNL 307 (405)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHhC--------CceecCCccEEecceeehhhhccCCEEEEEeccccCCCcccccccH
Confidence 11 112233333333332221111 1112233456777777788999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhcCCCCch
Q 009994 357 ALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFST 436 (520)
Q Consensus 357 al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g~~~~~ 436 (520)
||+||.+|+++|......+.......+|+.|+++|++++..++..++.+.++|..+ ++....+|+..+..+..-+...+
T Consensus 308 al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~~~l~~~~~~~~~k~ 386 (405)
T PRK05714 308 GFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPHNLALMAAMEGFERLFQAD-PLPLRWLRNTGLKLVDQMPEAKA 386 (405)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHHhhCHHHHH
Confidence 99999999999975321111122357999999999999999999999999999876 55578889988887665544444
Q ss_pred hHHHhhhc
Q 009994 437 GPVALLSG 444 (520)
Q Consensus 437 ~~~~l~~~ 444 (520)
-.+....|
T Consensus 387 ~~~~~~~g 394 (405)
T PRK05714 387 LFVRQALG 394 (405)
T ss_pred HHHHHHhc
Confidence 33333334
No 15
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=3e-43 Score=360.29 Aligned_cols=349 Identities=17% Similarity=0.261 Sum_probs=252.5
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCC----CceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEE
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP----DRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFK 130 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~----~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 130 (520)
+||+||||||+|+++|+.|++.|++|+|+|+.+... ...++..++++++++|+++|+++.+.... .+...+.+++
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~-~~~~~~~~~~ 80 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFV-AEMQDIYVVD 80 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhc-CCCcEEEEEE
Confidence 699999999999999999999999999999974321 23678899999999999999998886643 3445555554
Q ss_pred CCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeE
Q 009994 131 DGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLT 209 (520)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~v 209 (520)
........++. ......++.++|.+|.+.|.+.+.+.+++++++++ ++++.++++. |++...++ +++||+|
T Consensus 81 ~~g~~~~~~~~--~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~v~~~~~---~~~adlv 152 (374)
T PRK06617 81 NKASEILDLRN--DADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY---SIIKFDDK---QIKCNLL 152 (374)
T ss_pred CCCceEEEecC--CCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe---EEEEEcCC---EEeeCEE
Confidence 32222223322 12234578999999999999999998789998887 9999887775 44445444 4679999
Q ss_pred EEecCCcchhhhhhcCCCCCCcccceeeEEe-ccCCCCCCceEEEecCCCcEEEEecCCCe-EEEEEEeCCCCC---CCC
Q 009994 210 IVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTE-VRCLVDVPGQKV---PSI 284 (520)
Q Consensus 210 V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~---~~~ 284 (520)
|+|||.+|.+|+.++++.....+ ..++.+. ....++.+....++.+.++++++|+.++. ..+++..+.+.. ...
T Consensus 153 IgADG~~S~vR~~l~~~~~~~~y-~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lPl~~~~~~~~vw~~~~~~~~~~~~~ 231 (374)
T PRK06617 153 IICDGANSKVRSHYFANEIEKPY-QTALTFNIKHEKPHENCAMEHFLPLGPFALLPLKDQYASSVIWSTSSDQAALIVNL 231 (374)
T ss_pred EEeCCCCchhHHhcCCCcccccC-CeEEEEEEeccCCCCCEEEEEecCCCCEEEeECCCCCeEEEEEeCCHHHHHHHHcC
Confidence 99999999999999876533332 3333332 22233333345566677889999998875 455565542111 111
Q ss_pred CchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHHHHH
Q 009994 285 SNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVL 364 (520)
Q Consensus 285 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da~~L 364 (520)
..+.+.+.+.....+.+. .......+..+|.....+.+|.+|||+|+|||||.++|++|||+|+||+||.+|
T Consensus 232 ~~~~~~~~~~~~~~~~~~--------~i~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~L 303 (374)
T PRK06617 232 PVEEVRFLTQRNAGNSLG--------KITIDSEISSFPLKARIANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIEIL 303 (374)
T ss_pred CHHHHHHHHHHhhchhcC--------ceeeccceeEEEeeeeeccceecCCEEEEEcccccCCCCccccHHHHHHHHHHH
Confidence 222333333222211110 001112356778877788899999999999999999999999999999999999
Q ss_pred HHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhcCC
Q 009994 365 RNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGG 432 (520)
Q Consensus 365 a~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g~ 432 (520)
++.|.. ..+|++|+++|++++..++.+++.+.++|+.. .+....+|+..+..+..-+
T Consensus 304 a~~L~~----------~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f~~~-~~~~~~~R~~~l~~~~~~~ 360 (374)
T PRK06617 304 SMIVSN----------NGTLQEYQKLRQEDNFIMYKLTDELNNIFSNY-SKNLRCLRQIGFKVINNFK 360 (374)
T ss_pred HHHHcC----------cchHHHHHHHHhHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhcCH
Confidence 999842 14899999999999999999999999999876 4567888999887766543
No 16
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=2.2e-43 Score=367.09 Aligned_cols=369 Identities=18% Similarity=0.202 Sum_probs=253.3
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCC--ceeeeeeccchHHHHHhcCchhHHhhcccceeceEEE
Q 009994 51 NGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD--RIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYAL 128 (520)
Q Consensus 51 ~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~--~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 128 (520)
...++||+||||||+|+++|+.|+++|++|+|+||.+.... +..+..++++++++|+++|+++.+..... ......+
T Consensus 15 ~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~-~~~~~~~ 93 (415)
T PRK07364 15 RSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIG-KFRQIRL 93 (415)
T ss_pred CccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcC-CccEEEE
Confidence 35579999999999999999999999999999999976543 35677899999999999999988775432 2333344
Q ss_pred EECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecC
Q 009994 129 FKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAP 207 (520)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad 207 (520)
+.........+...+......++...+..+.+.|++.+.+.+++++++++ +++++++++.+. |++.+ +++..+++||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~-v~~~~-~~~~~~i~ad 171 (415)
T PRK07364 94 SDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAAT-VTLEI-EGKQQTLQSK 171 (415)
T ss_pred EeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeE-EEEcc-CCcceEEeee
Confidence 43222112223222222223345555567899999999887889999886 999987776543 44433 3333468899
Q ss_pred eEEEecCCcchhhhhhcCCCCCCcccceeeEEe-ccCCCCCCceEEEecCCCcEEEEecCCCeEEEEEEeCCCC---CCC
Q 009994 208 LTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQK---VPS 283 (520)
Q Consensus 208 ~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~ 283 (520)
+||+|||.+|.+|+.+++...+.......+.+. ....+........+.+.++++++|++++..++++..+.+. ...
T Consensus 172 lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 251 (415)
T PRK07364 172 LVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAPHNDIAYERFWPSGPFAILPLPGNRCQIVWTAPHAQAKALLA 251 (415)
T ss_pred EEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccCCCCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHHHHHHHC
Confidence 999999999999999987654333222222221 1222222222333445678899999988877776654221 112
Q ss_pred CCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHHHH
Q 009994 284 ISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVV 363 (520)
Q Consensus 284 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da~~ 363 (520)
.+.++..+.+.+.+.+.++ .+. .+ .....++.......+|.+|||+|+|||||.++|++|||+|+||+||..
T Consensus 252 ~~~~~~~~~l~~~~~~~~~-~~~-----~~--~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~DA~~ 323 (415)
T PRK07364 252 LPEAEFLAELQQRYGDQLG-KLE-----LL--GDRFLFPVQLMQSDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRDAAA 323 (415)
T ss_pred CCHHHHHHHHHHHhhhhhc-Cce-----ec--CCCceecchhhhhhhhcCCcEEEEecccccCCCcccccHhHHHHHHHH
Confidence 2334455555443332211 110 01 233456666666788999999999999999999999999999999999
Q ss_pred HHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhcC
Q 009994 364 LRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLG 431 (520)
Q Consensus 364 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g 431 (520)
|+++|......+......++|+.|+++|++++..++.+++.+.++|..+ ++....+|+..+..+..-
T Consensus 324 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~-~~~~~~~r~~~~~~~~~~ 390 (415)
T PRK07364 324 LAQVLQTAHQRGEDIGSLAVLKRYERWRKRENWLILGFTDLLDRLFSNQ-WWPLVVVRRLGLWLLRHV 390 (415)
T ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhhC
Confidence 9999975421111111247999999999999999999999999999865 556778899887776543
No 17
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=5.8e-43 Score=359.61 Aligned_cols=359 Identities=18% Similarity=0.203 Sum_probs=254.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCC------ceeeeeeccchHHHHHhcCchhHHhhcccceeceEE
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD------RIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYA 127 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~------~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~ 127 (520)
.+||+||||||+|+++|+.|++.|++|+|+|+.+.... ..+...++++++++|+++|+++.+..........+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~ 82 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE 82 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence 47999999999999999999999999999998752211 123458999999999999999888653333333444
Q ss_pred EEECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEec
Q 009994 128 LFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYA 206 (520)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~a 206 (520)
.+..+.. ...++..+......++.+.+..+...|.+.+.+.+++++++++ +++++++++. +++...+|++ ++|
T Consensus 83 ~~~~~~~-~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~---~~v~~~~g~~--~~~ 156 (384)
T PRK08849 83 TWEHPEC-RTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG---NRVTLESGAE--IEA 156 (384)
T ss_pred EEeCCCc-eEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe---EEEEECCCCE--EEe
Confidence 4443221 1222222222233467788888999999998888889999887 9999887764 4555667764 569
Q ss_pred CeEEEecCCcchhhhhhcCCCCCCcccceeeEEe-ccCCCCCCceEEEecCCCcEEEEecCCCeEEEEEEeCCC---CCC
Q 009994 207 PLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQ---KVP 282 (520)
Q Consensus 207 d~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~---~~~ 282 (520)
|+||+|||.+|.+|+.+++......+...++++. ....++.+..+.++.+.++..++|+.++..++++..... ...
T Consensus 157 ~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~pl~~~~~~~~~~~~~~~~~~~~ 236 (384)
T PRK08849 157 KWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQPQQDITWQQFTPSGPRSFLPLCGNQGSLVWYDSPKRIKQLS 236 (384)
T ss_pred eEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcCCCCCCEEEEEeCCCCCEEEeEcCCCceEEEEECCHHHHHHHH
Confidence 9999999999999999987654444333333322 223344444555566667777789987665555543321 111
Q ss_pred CCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHHH
Q 009994 283 SISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 362 (520)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da~ 362 (520)
..+.++..+.+.+.+.+.+. + ++......|++....+.+|.+|||+|+|||||.++|++|||+|+||+||.
T Consensus 237 ~~~~~~~~~~l~~~~~~~~~-~--------~~~~~~~~~~l~~~~~~~~~~grv~LlGDAAH~~~P~~GQG~n~al~Da~ 307 (384)
T PRK08849 237 AMNPEQLRSEILRHFPAELG-E--------IKVLQHGSFPLTRRHAQQYVKNNCVLLGDAAHTINPLAGQGVNLGFKDVD 307 (384)
T ss_pred cCCHHHHHHHHHHHhhhhhC-c--------EEeccceEeeccccccchhccCCEEEEEcccccCCCCccchHhHHHHHHH
Confidence 22344555555443322111 1 11123345677767788999999999999999999999999999999999
Q ss_pred HHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhcCCC
Q 009994 363 VLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGV 433 (520)
Q Consensus 363 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g~~ 433 (520)
+|++.|... +...+++|+.|+++|+++...++..++.+.++|+.. ++....+|+..+..+...+.
T Consensus 308 ~L~~~l~~~-----~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~~~l~~~~~~~~ 372 (384)
T PRK08849 308 VLLAETEKQ-----GVLNDASFARYERRRRPDNLLMQTGMDLFYKTFSNS-LTPLKFVRNAALKLAENSGP 372 (384)
T ss_pred HHHHHHHhc-----CCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHhccHH
Confidence 999998632 123567999999999999999999999999999876 44577889988877665443
No 18
>PRK06185 hypothetical protein; Provisional
Probab=100.00 E-value=8e-43 Score=361.87 Aligned_cols=376 Identities=20% Similarity=0.217 Sum_probs=269.0
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEE
Q 009994 51 NGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFK 130 (520)
Q Consensus 51 ~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 130 (520)
...++||+||||||+|+++|+.|+++|++|+|+|+++......++..+++.+.+.|+++|+++.+.+........+.++.
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~ 82 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEI 82 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEE
Confidence 35679999999999999999999999999999999865444457889999999999999999888765444555566655
Q ss_pred CCccc-cccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCe
Q 009994 131 DGKST-RLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPL 208 (520)
Q Consensus 131 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~ 208 (520)
.+... ...+..... ..+.++.+++..+.+.|.+.+.+.+++++++++ ++++..+++.+.+|++...+|+ .+++||+
T Consensus 83 ~~~~~~~~~~~~~~~-~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~-~~i~a~~ 160 (407)
T PRK06185 83 GGRTVTLADFSRLPT-PYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGP-GEIRADL 160 (407)
T ss_pred CCeEEEecchhhcCC-CCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCc-EEEEeCE
Confidence 44321 222221111 123456788999999999999887789999886 9999988888877777766664 3578999
Q ss_pred EEEecCCcchhhhhhcCCCCCCcccceeeEEeccCCC--CCCceEEEecCCCcEEEEecCCCeEEEEEEeCCCCCCCCCc
Q 009994 209 TIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLENCQLP--FANHGHVILADPSPILFYPISSTEVRCLVDVPGQKVPSISN 286 (520)
Q Consensus 209 vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 286 (520)
||+|||.+|.+|+.++++.....+....+.+. ...+ ..+....++.++++++++|.+ +.+++.+..+.+.......
T Consensus 161 vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~llP~~-~~~~i~~~~~~~~~~~~~~ 238 (407)
T PRK06185 161 VVGADGRHSRVRALAGLEVREFGAPMDVLWFR-LPREPDDPESLMGRFGPGQGLIMIDRG-DYWQCGYVIPKGGYAALRA 238 (407)
T ss_pred EEECCCCchHHHHHcCCCccccCCCceeEEEe-cCCCCCCCcccceEecCCcEEEEEcCC-CeEEEEEEecCCCchhhhh
Confidence 99999999999999988654444332222222 1111 112234567788899999997 6677777766443332222
Q ss_pred hHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHHHHHHH
Q 009994 287 GEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRN 366 (520)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da~~La~ 366 (520)
....++.+. +...+| .+.+.+...........++.....+.+|.++|++|+|||||.+||++|||+|+||+||..|++
T Consensus 239 ~~~~~~~~~-~~~~~p-~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~ 316 (407)
T PRK06185 239 AGLEAFRER-VAELAP-ELADRVAELKSWDDVKLLDVRVDRLRRWHRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAAN 316 (407)
T ss_pred hhHHHHHHH-HHHhCc-cHHHHHhhcCCccccEEEEEeccccccccCCCeEEEeccccccCcccccchhHHHHHHHHHHH
Confidence 222222222 211122 222222222222345566777777889999999999999999999999999999999999999
Q ss_pred hcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCC-hhHHHHHHHHHHHHHhcCCCC
Q 009994 367 LLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSP-DQARKEMRQACFDYLSLGGVF 434 (520)
Q Consensus 367 ~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~-~~~~~~lr~~~~~~~~~g~~~ 434 (520)
.|....... +..+..|+.|+++|++....++.+++.+.++|..+. .+....+|+..+..+..-+..
T Consensus 317 ~l~~~~~~~--~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~ 383 (407)
T PRK06185 317 ILAEPLRRG--RVSDRDLAAVQRRREFPTRVTQALQRRIQRRLLAPALAGRGPLGPPLLLRLLNRLPWL 383 (407)
T ss_pred HHHHHhccC--CccHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccccccCccccCCchHHHHHHhChhH
Confidence 998653222 123489999999999999999999999999998763 155677788877776655433
No 19
>PRK07045 putative monooxygenase; Reviewed
Probab=100.00 E-value=1.8e-42 Score=356.76 Aligned_cols=359 Identities=25% Similarity=0.343 Sum_probs=247.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEEC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKD 131 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 131 (520)
+.++||+||||||+||++|+.|+++|++|+|+||++.......+..++++++++|+++|+.+.+..........+.++.+
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHD 82 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecC
Confidence 45689999999999999999999999999999999876555566779999999999999999887654333344444444
Q ss_pred CccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEE
Q 009994 132 GKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTI 210 (520)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV 210 (520)
++.. ..++............++|..+.+.|.+.+...+++++++++ ++++.++++.+ .+.++..+|+ ++++|+||
T Consensus 83 g~~~-~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~~~v~~~~g~--~~~~~~vI 158 (388)
T PRK07045 83 KELI-ASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGT-VTSVTLSDGE--RVAPTVLV 158 (388)
T ss_pred CcEE-EEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCc-EEEEEeCCCC--EEECCEEE
Confidence 4432 112211111111224578899999999999877899999997 99998765542 1345556776 46699999
Q ss_pred EecCCcchhhhhh-cCCCCCCc---ccceeeEEeccCCCCCCceEEEecC-CCcEEEEecCCCeEEEEEEeCCCCCCC--
Q 009994 211 VCDGCFSNLRRSL-CKPKVDVP---SCFVGLVLENCQLPFANHGHVILAD-PSPILFYPISSTEVRCLVDVPGQKVPS-- 283 (520)
Q Consensus 211 ~AdG~~S~vR~~l-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~-- 283 (520)
+|||.+|.+|+.+ +.+..... ....+........ +.....++.+ .+..+++|++++..++++.++.+...+
T Consensus 159 gADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 236 (388)
T PRK07045 159 GADGARSMIRDDVLRMPAERVPYATPMAFGTIALTDSV--RECNRLYVDSNQGLAYFYPIGDQATRLVVSFPADEMQGYL 236 (388)
T ss_pred ECCCCChHHHHHhhCCCcccCCCCcceeEEEEeccCCc--cccceEEEcCCCceEEEEEcCCCcEEEEEEeccccchhcc
Confidence 9999999999975 44322211 1122222211111 2223344544 345678999888778887766443222
Q ss_pred --CCchHHHHHHHHhcCCCCChhhHHHHHHhhh-cCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHH
Q 009994 284 --ISNGEMANYLKAMVAPQVPPELHEAFVSAVE-RGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSD 360 (520)
Q Consensus 284 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~D 360 (520)
...+++.+.+.+.+.+ .+.+.+ ...+ ...+..+++.....++|..|||+|+|||||.++|++|||+|+||+|
T Consensus 237 ~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~D 311 (388)
T PRK07045 237 ADTTRTKLLARLNEFVGD----ESADAM-AAIGAGTAFPLIPLGRMNLDRYHKRNVVLLGDAAHSIHPITGQGMNLAIED 311 (388)
T ss_pred CCCCHHHHHHHHhhhcCc----cchHHH-hccCcccccceeecCccccccccCCCEEEEEccccccCCCccccHHHHHHH
Confidence 2233444444443322 222222 1121 1223334566666788999999999999999999999999999999
Q ss_pred HHHHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHHHH
Q 009994 361 IVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQAC 424 (520)
Q Consensus 361 a~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~ 424 (520)
|.+|+++|..... .....+++|++|+++|++++..++..++.+.+.|+.+ .+..+..|..+
T Consensus 312 a~~La~~L~~~~~--~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 372 (388)
T PRK07045 312 AGELGACLDLHLS--GQIALADALERFERIRRPVNEAVISYGHALATTYHDR-AALVANFRSQL 372 (388)
T ss_pred HHHHHHHHHhhcC--CchhHHHHHHHHHHHhhhHHHHHHhhhHHHhhhcccc-hhHHHHHHhhh
Confidence 9999999986531 2345788999999999999999999999999998765 45555555544
No 20
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=100.00 E-value=2.7e-43 Score=363.39 Aligned_cols=365 Identities=20% Similarity=0.267 Sum_probs=260.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCC-----ceeeeeeccchHHHHHhcCchhHHhhcccceeceE
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD-----RIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGY 126 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~-----~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~ 126 (520)
...+||+||||||+|+++|+.|+++|++|+|+||.+.+.. ..+...++++++++|+++|+++.+.+........+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRM 83 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEE
Confidence 4568999999999999999999999999999999864321 12445789999999999999998876433344455
Q ss_pred EEEECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEe
Q 009994 127 ALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAY 205 (520)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ 205 (520)
.++..+......++.........++.+++..+.+.|.+.+++. ++++.+++ |+++.++++. +++...+|++ ++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~-gv~i~~~~~v~~i~~~~~~---v~v~~~~g~~--~~ 157 (392)
T PRK08773 84 RVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAA-GVQLHCPARVVALEQDADR---VRLRLDDGRR--LE 157 (392)
T ss_pred EEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhC-CCEEEcCCeEEEEEecCCe---EEEEECCCCE--EE
Confidence 5554332222333332333344578899999999999999886 89999886 9999887764 4455566764 56
Q ss_pred cCeEEEecCCcchhhhhhcCCCCCCcccceeeEEe-ccCCCCCCceEEEecCCCcEEEEecCCCeEEEEEEeCCCCC---
Q 009994 206 APLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQKV--- 281 (520)
Q Consensus 206 ad~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--- 281 (520)
||+||+|||.+|.+|+.++++.....+...+++.. ....+.....+.++.+++++.++|++++..++++.++.+..
T Consensus 158 a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lP~~~~~~~~~w~~~~~~~~~~ 237 (392)
T PRK08773 158 AALAIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTEHPHQATAWQRFLPTGPLALLPFADGRSSIVWTLPDAEAERV 237 (392)
T ss_pred eCEEEEecCCCchHHHhhcCCceEEEeccEEEEEEEEccCCCCCEEEEEeCCCCcEEEEECCCCceEEEEECCHHHHHHH
Confidence 99999999999999999987654444444444432 22334444445556778889999999888778877653221
Q ss_pred CCCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHH
Q 009994 282 PSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDI 361 (520)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da 361 (520)
...+.++..+.+.+.+.+.+.+ +. .......++.....+.+|.++||+|+|||||.++|++|||+|+||+||
T Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~-~~-------~~~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da 309 (392)
T PRK08773 238 LALDEAAFSRELTQAFAARLGE-VR-------VASPRTAFPLRRQLVQQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRDV 309 (392)
T ss_pred HcCCHHHHHHHHHHHHhhhhcC-eE-------ecCCccEeechhhhhhhhcCCcEEEEechhhcCCCchhchhhhhHHHH
Confidence 1122333333333332221110 00 011223466666678899999999999999999999999999999999
Q ss_pred HHHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhcC
Q 009994 362 VVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLG 431 (520)
Q Consensus 362 ~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g 431 (520)
.+|+++|.++.....+.....+|++|+++|+++...+......+.++|... .+....+|+..+..+..-
T Consensus 310 ~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~~~~~~~~~~~l~~~f~~~-~~~~~~~r~~~l~~~~~~ 378 (392)
T PRK08773 310 AALQQLVRQAHARRADWAAPHRLQRWARTRRSDNTVAAYGFDAINRVFSND-EMHLTLLRGSVLGLAGKL 378 (392)
T ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHhhC
Confidence 999999986532222233457999999999999887777778899999876 566888999888776543
No 21
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=100.00 E-value=1.2e-42 Score=374.99 Aligned_cols=349 Identities=17% Similarity=0.202 Sum_probs=245.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhC-CCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEE
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKD-GRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFK 130 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~-G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 130 (520)
..++||+||||||+||++|+.|+++ |++|+||||.+.....+++..++++++++|+++|+.+.+.+... ......++.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~-~~~~~~~~~ 108 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAY-WINETAFWK 108 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcc-cccceEEEc
Confidence 4478999999999999999999995 99999999998777777888999999999999999998876432 333444444
Q ss_pred CCcc--ccc----cCC-CcCCCCCccceeecchHHHHHHHHHHHcCCC-eEEEece-EEEEEeeCCe--EEEEEEEeC--
Q 009994 131 DGKS--TRL----SYP-LEKFHADVSGRSFHNGRFIQRMREKAASLPN-VRLEQGT-VTSLLEENGT--IKGVQYKTK-- 197 (520)
Q Consensus 131 ~~~~--~~~----~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-v~i~~~~-v~~~~~~~~~--v~gv~v~~~-- 197 (520)
.+.. ..+ ... ............++|.++++.|.+.+.+.++ +++.+++ +++++++++. .+.|++++.
T Consensus 109 ~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~ 188 (634)
T PRK08294 109 PDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDG 188 (634)
T ss_pred CCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCC
Confidence 2211 000 000 0000011122578999999999999987753 6788887 9999876422 123556543
Q ss_pred --CCcEEEEecCeEEEecCCcchhhhhhcCCCCCCcccceeeEEe---ccCCCCCCceEEEe-cCCCcEEEEecCCCe-E
Q 009994 198 --DGQELRAYAPLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE---NCQLPFANHGHVIL-ADPSPILFYPISSTE-V 270 (520)
Q Consensus 198 --~g~~~~~~ad~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~-~ 270 (520)
+|++.+++|||||+|||++|.||+.++++..+........+.. ..++|.......+. .+++.++++|..++. +
T Consensus 189 ~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~~~~p~~~~~~~~~~~~~g~~~~~P~~~g~~~ 268 (634)
T PRK08294 189 EHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAVTDFPDIRLKCAIQSASEGSILLIPREGGYLV 268 (634)
T ss_pred CCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEccCCCCcceEEEEecCCCceEEEEECCCCeEE
Confidence 4655678999999999999999999998766554333222211 23455433222233 466889999998874 5
Q ss_pred EEEEEeCC---CC---CCCCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCC----------CCC
Q 009994 271 RCLVDVPG---QK---VPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQ----------PTP 334 (520)
Q Consensus 271 ~~~~~~~~---~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----------~~g 334 (520)
++++.... +. ....+.+++.+.+++.+.|...+ +. .......++...+.+++| +.|
T Consensus 269 r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~-~~-------~v~w~s~y~i~~r~a~~f~~~~~~~~~~r~g 340 (634)
T PRK08294 269 RLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLD-VK-------EVAWWSVYEVGQRLTDRFDDVPAEEAGTRLP 340 (634)
T ss_pred EEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCc-ee-------EEeEEecccccceehhhcccccccccccccC
Confidence 66655421 11 12445667777776655443111 10 011223344444555554 469
Q ss_pred cEEEEccCCCCCCCCCCchhhHHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCC
Q 009994 335 GALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSS 412 (520)
Q Consensus 335 rv~LvGDAAh~~~P~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~ 412 (520)
||+|+|||||.++|.+|||||+||+||.+|+|+|+.+. .+.+.+.+|++|+.||+|+++.+...++.+.++|...
T Consensus 341 RVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl---~g~a~~~lL~tYe~ERrp~a~~li~~~~~~~~l~~~~ 415 (634)
T PRK08294 341 RVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVL---SGRSPPELLHTYSAERQAIAQELIDFDREWSTMMAAP 415 (634)
T ss_pred CEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999765 3345678999999999999999999999999999765
No 22
>PRK06834 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-42 Score=365.49 Aligned_cols=348 Identities=20% Similarity=0.219 Sum_probs=249.9
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCC-CceeeeeeccchHHHHHhcCchhHHhhccccee-ceEEEEEC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP-DRIVGELLQPGGYLKLVELGLEDCVEEIDAQQV-LGYALFKD 131 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~-~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~-~~~~~~~~ 131 (520)
++||+||||||+|+++|+.|+++|++|+|+||.+.+. ...++..++++++++|+++|+.+.+.+...... .++..
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~--- 79 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAA--- 79 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeee---
Confidence 5899999999999999999999999999999987543 344677899999999999999988865322111 11110
Q ss_pred CccccccCCCcCCC-CCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeE
Q 009994 132 GKSTRLSYPLEKFH-ADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLT 209 (520)
Q Consensus 132 ~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~v 209 (520)
..+...... ..+.++.+.|..+++.|.+.+++. ++++++++ ++++.++++. |++...+|+ +++||+|
T Consensus 80 -----~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~-gv~i~~~~~v~~v~~~~~~---v~v~~~~g~--~i~a~~v 148 (488)
T PRK06834 80 -----TRLDISDFPTRHNYGLALWQNHIERILAEWVGEL-GVPIYRGREVTGFAQDDTG---VDVELSDGR--TLRAQYL 148 (488)
T ss_pred -----EecccccCCCCCCccccccHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEcCCe---EEEEECCCC--EEEeCEE
Confidence 011111111 123456788999999999999887 79999987 9999988774 445556665 4679999
Q ss_pred EEecCCcchhhhhhcCCCCCCcccceeeEEeccCCCCCCceEEEecCCCcEEEEecC-CCeEEEEEEeCCCC-CCCCCch
Q 009994 210 IVCDGCFSNLRRSLCKPKVDVPSCFVGLVLENCQLPFANHGHVILADPSPILFYPIS-STEVRCLVDVPGQK-VPSISNG 287 (520)
Q Consensus 210 V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~-~~~~~~~ 287 (520)
|+|||.+|.+|+.+++...+..+....++.. ..++.+.....+..+.++..+.|.. ++..++.+..+... ....+.+
T Consensus 149 VgADG~~S~vR~~lgi~~~g~~~~~~~~~~d-v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (488)
T PRK06834 149 VGCDGGRSLVRKAAGIDFPGWDPTTSYLIAE-VEMTEEPEWGVHRDALGIHAFGRLEDEGPVRVMVTEKQVGATGEPTLD 227 (488)
T ss_pred EEecCCCCCcHhhcCCCCCCCCcceEEEEEE-EEecCCCCcceeeCCCceEEEeccCCCCeEEEEEecCCCCCCCCCCHH
Confidence 9999999999999998877665544444332 2332222122333445666677765 55556655543221 1233455
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHHHHHHHh
Q 009994 288 EMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNL 367 (520)
Q Consensus 288 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da~~La~~ 367 (520)
+..+.+.+.....+... ....+..++.....+++|++|||+|+|||||.++|++|||||+||+||.+|+|+
T Consensus 228 ~~~~~l~~~~g~~~~~~---------~~~~~~~~~~~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLawk 298 (488)
T PRK06834 228 DLREALIAVYGTDYGIH---------SPTWISRFTDMARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWK 298 (488)
T ss_pred HHHHHHHHhhCCCCccc---------cceeEEeccccceecccccCCcEEEEeeccccCCccccccccccHHHHHHHHHH
Confidence 66666665544332211 111345667777789999999999999999999999999999999999999999
Q ss_pred cCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhc
Q 009994 368 LKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSL 430 (520)
Q Consensus 368 L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~ 430 (520)
|+.+. .+.+.+.+|++|+++|+|.+..++..+..+..++. +++....+|+.++.++..
T Consensus 299 La~vl---~g~~~~~lLd~Ye~eRrp~~~~~~~~t~~~~~~~~--~~~~~~~lR~~~~~~~~~ 356 (488)
T PRK06834 299 LAQVV---KGTSPESLLDTYHAERHPVAARVLRNTMAQVALLR--PDDRTEALRDIVAELLGM 356 (488)
T ss_pred HHHHH---cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CChHHHHHHHHHHHHhcC
Confidence 99764 23446789999999999999999998888887775 356678889988776544
No 23
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=100.00 E-value=3.3e-42 Score=354.72 Aligned_cols=360 Identities=22% Similarity=0.305 Sum_probs=259.2
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCc-----eeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEE
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDR-----IVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFK 130 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~-----~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 130 (520)
||+||||||+|+++|+.|+++|++|+|+||++.+... .++..+++++.+.|+++|+.+.+.+.......+..++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 7999999999999999999999999999999765332 36788999999999999999888763334455566665
Q ss_pred CCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeE
Q 009994 131 DGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLT 209 (520)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~v 209 (520)
.+......++.........++.++|..+.+.|.+.+.+.+++++++++ |+++.++++. +.+...+|+. +.+|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~---~~v~~~~g~~--~~~~~v 155 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDH---VELTLDDGQQ--LRARLL 155 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCe---eEEEECCCCE--EEeeEE
Confidence 443222233222222234567899999999999999988669999887 9999877764 4556677764 569999
Q ss_pred EEecCCcchhhhhhcCCCCCCcccceeeEEe-ccCCCCCCceEEEecCCCcEEEEecCCCeEEEEEEeCCCC---CCCCC
Q 009994 210 IVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQK---VPSIS 285 (520)
Q Consensus 210 V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~ 285 (520)
|+|||.+|.+|+.++++.........++... ....+.+...+.++.+++.++++|++++..++.+..+... ....+
T Consensus 156 i~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 235 (385)
T TIGR01988 156 VGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERPHQGTAWERFTPTGPLALLPLPDNRSSLVWTLPPEEAERLLALS 235 (385)
T ss_pred EEeCCCCCHHHHHcCCCccccccCCeEEEEEEEecCCCCCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHHcCC
Confidence 9999999999999986543332222222221 2222333334445667788899999998878877665321 11233
Q ss_pred chHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHHHHHH
Q 009994 286 NGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLR 365 (520)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da~~La 365 (520)
.+++.+.+.+.+.+.++. + .....+..+++......+|..+||+|+|||||.++|++|||+|+||+||.+|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La 307 (385)
T TIGR01988 236 DEEFLAELQRAFGSRLGA-I-------TLVGERHAFPLSLTHAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVAALA 307 (385)
T ss_pred HHHHHHHHHHHHhhhcCc-e-------EeccCcceeechhhhhhheecCceEEEecccccCCccccchhhhhHHHHHHHH
Confidence 445555555433222111 0 11234455666666677899999999999999999999999999999999999
Q ss_pred HhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHh
Q 009994 366 NLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLS 429 (520)
Q Consensus 366 ~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~ 429 (520)
+.|......+.....+.+|+.|+++|++++..++..++.+.+++... ++....+|+..+..+.
T Consensus 308 ~~L~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~ 370 (385)
T TIGR01988 308 EVLEDARRRGEDIGSPRVLQRYERRRRFDNAAMLGATDGLNRLFSND-FPPLRLLRNLGLRLLN 370 (385)
T ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHh
Confidence 99986421111112468999999999999999999999999999865 5567778888777654
No 24
>PRK09126 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=359.24 Aligned_cols=365 Identities=19% Similarity=0.202 Sum_probs=255.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCC-----CceeeeeeccchHHHHHhcCchhHHhhcccceeceEE
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP-----DRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYA 127 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~-----~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~ 127 (520)
+++||+||||||+|+++|+.|+++|++|+|+||.+... ....+..++++++++|+++|+.+.+......+..+..
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~ 81 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAK 81 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEE
Confidence 36899999999999999999999999999999987531 1234456889999999999999888654433444555
Q ss_pred EEECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEec
Q 009994 128 LFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYA 206 (520)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~a 206 (520)
++.......+.++.........++.++|..+.+.|.+.+.+.+++++++++ |++++++++. +.+...+|+ +++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~---~~v~~~~g~--~~~a 156 (392)
T PRK09126 82 VLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG---AQVTLANGR--RLTA 156 (392)
T ss_pred EEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe---EEEEEcCCC--EEEe
Confidence 543322222333322222334567789999999999988776789999997 9998877664 445556676 4669
Q ss_pred CeEEEecCCcchhhhhhcCCCCCCcccceeeEEe-ccCCCCCCceEEEecCCCcEEEEecCCCeEEEEEEeCCCCCC---
Q 009994 207 PLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQKVP--- 282 (520)
Q Consensus 207 d~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--- 282 (520)
|+||+|||.+|.+|+.++++..........+... ....+.....+.+++.+++++++|++++..++++.++.+..+
T Consensus 157 ~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~ 236 (392)
T PRK09126 157 RLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHELPHHHTAWEWFGYGQTLALLPLNGHLSSLVLTLPPDQIEALL 236 (392)
T ss_pred CEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEeccCCCCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHHHHHHH
Confidence 9999999999999999987543222221112111 112233334456777777889999998887887766532111
Q ss_pred CCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHHH
Q 009994 283 SISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 362 (520)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da~ 362 (520)
..+.++..+.+.+.+.+.+. . ......+..++.....+++|..+||+|+|||||.++|++|||+|+||+||.
T Consensus 237 ~~~~~~~~~~l~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~ai~da~ 308 (392)
T PRK09126 237 ALDPEAFAAEVTARFKGRLG-A-------MRLVSSRHAYPLVAVYAHRFVAKRFALIGDAAVGMHPVTAHGFNLGLKGQD 308 (392)
T ss_pred cCCHHHHHHHHHHHHhhhcc-C-------eEEcCCCcEeechHHHHHHHhhcceEEEehhhhcCCCcccchhhhhHHHHH
Confidence 12233333333322211110 0 001123345566556677889999999999999999999999999999999
Q ss_pred HHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhcC
Q 009994 363 VLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLG 431 (520)
Q Consensus 363 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g 431 (520)
.|+++|..+.....+...+++|+.|+++|++++..++..++.+.+++..+ ++....+|+.++..+..-
T Consensus 309 ~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~ 376 (392)
T PRK09126 309 ILARLILAAARRGQDIGAASLLERYERKHRLATRPLYHATNAIAALYTDD-RPPARLLRRAVLRAANRF 376 (392)
T ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHHhhC
Confidence 99999976532111223468999999999999999999999999999775 566778899988876543
No 25
>PRK07190 hypothetical protein; Provisional
Probab=100.00 E-value=7.1e-42 Score=359.17 Aligned_cols=338 Identities=17% Similarity=0.157 Sum_probs=244.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEEC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKD 131 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 131 (520)
+..+||+||||||+||++|+.|+++|++|+|+||.+.+...+++..++++++++|+.+|+.+.+..... ......++.+
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~-~~~~~~~~~~ 81 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGK-PCNTSSVWAN 81 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCc-cceeEEEecC
Confidence 445899999999999999999999999999999998776677788899999999999999988765432 2222334443
Q ss_pred CccccccCC-CcCC--CCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecC
Q 009994 132 GKSTRLSYP-LEKF--HADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAP 207 (520)
Q Consensus 132 ~~~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad 207 (520)
++....... .... ...+....+.|..+++.|.+.+.+. |+++++++ |+++.++++.+ .+...+|+ +++|+
T Consensus 82 g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~-Gv~v~~~~~v~~l~~~~~~v---~v~~~~g~--~v~a~ 155 (487)
T PRK07190 82 GKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEA-GAAVKRNTSVVNIELNQAGC---LTTLSNGE--RIQSR 155 (487)
T ss_pred CceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCee---EEEECCCc--EEEeC
Confidence 332111100 0000 1122335678899999999999887 89999987 99999887753 34445565 57799
Q ss_pred eEEEecCCcchhhhhhcCCCCCCcccceeeEE---eccCCCCCCceEEEecCCCcEEEEecCCCeEEEEEEeCCCCCCCC
Q 009994 208 LTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVL---ENCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQKVPSI 284 (520)
Q Consensus 208 ~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 284 (520)
+||+|||.+|.+|+.++++..+.......... ...+.|.......+..+.+.++++|..++..++++... .+..
T Consensus 156 ~vVgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~r~~~~~~---~~~~ 232 (487)
T PRK07190 156 YVIGADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKVPEIIVFQAETSDVAWIPREGEIDRFYVRMD---TKDF 232 (487)
T ss_pred EEEECCCCCHHHHHHcCCCccccccceeEEEEEEEEccCCCCCcceEEEEcCCCCEEEEECCCCEEEEEEEcC---CCCC
Confidence 99999999999999999887654433322222 12233432223334566778888999877666554432 2345
Q ss_pred CchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCC-CCcEEEEccCCCCCCCCCCchhhHHHHHHHH
Q 009994 285 SNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQP-TPGALLMGDAFNMRHPLTGGGMTVALSDIVV 363 (520)
Q Consensus 285 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~grv~LvGDAAh~~~P~~G~G~n~al~Da~~ 363 (520)
+.+++.+.+.+.+.+. .+. ..+...+..|+...+.+++|+ +|||+|+|||||.++|.+|||||+||+||.+
T Consensus 233 t~~~~~~~l~~~~~~~---~~~-----~~~~~w~s~~~~~~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqDA~n 304 (487)
T PRK07190 233 TLEQAIAKINHAMQPH---RLG-----FKEIVWFSQFSVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLADAFN 304 (487)
T ss_pred CHHHHHHHHHHhcCCC---CCc-----eEEEEEEEEeeeCcEehhhcCcCCcEEEEecccccCCCccccchhhhHHHHHH
Confidence 6667777676644332 110 011124567888888999997 7999999999999999999999999999999
Q ss_pred HHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhc
Q 009994 364 LRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFS 410 (520)
Q Consensus 364 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~ 410 (520)
|+|+|+.+. ++.+.+.+|++|+.||+|.+..+...++.+.++..
T Consensus 305 L~wkLa~v~---~g~a~~~lLdtY~~eR~p~a~~vl~~t~~~~~~~~ 348 (487)
T PRK07190 305 LIWKLNMVI---HHGASPELLQSYEAERKPVAQGVIETSGELVRSTK 348 (487)
T ss_pred HHHHHHHHH---cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999998764 23345789999999999999999998887776653
No 26
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=100.00 E-value=1.1e-41 Score=351.49 Aligned_cols=365 Identities=19% Similarity=0.244 Sum_probs=251.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCC------ceeeeeeccchHHHHHhcCchhHHhhcccceece
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD------RIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLG 125 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~------~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~ 125 (520)
.+++||+||||||+|+++|+.|+++|++|+|+|+.+.... ..+...+++++.++|+++|+++.+..........
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~ 82 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRR 82 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccce
Confidence 4569999999999999999999999999999999853221 2245679999999999999998876533333233
Q ss_pred EEEEECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEE
Q 009994 126 YALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRA 204 (520)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~ 204 (520)
...+..... ...+..........++.++|..|.+.|.+.+.+.+++++++++ ++++.++++. +.+...+|++ +
T Consensus 83 ~~~~~~~~~-~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~---~~v~~~~g~~--~ 156 (391)
T PRK08020 83 LETWEWETA-HVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG---WELTLADGEE--I 156 (391)
T ss_pred EEEEeCCCC-eEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe---EEEEECCCCE--E
Confidence 333321111 1122211222234567899999999999999887789998886 8898877664 4455566753 6
Q ss_pred ecCeEEEecCCcchhhhhhcCCCCCCcccceeeEEe-ccCCCCCCceEEEecCCCcEEEEecCCCeEEEEEEeCCCC---
Q 009994 205 YAPLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQK--- 280 (520)
Q Consensus 205 ~ad~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--- 280 (520)
+||+||+|||.+|.+|+.++++.....+...++.+. ....+..+..+..+...++..++|+.++...+++..+...
T Consensus 157 ~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~v~~~~~~~~~~ 236 (391)
T PRK08020 157 QAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENPPGDSTWQQFTPSGPRAFLPLFDNWASLVWYDSPARIRQ 236 (391)
T ss_pred EeCEEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecCCCCCEEEEEEcCCCCEEEeECCCCcEEEEEECCHHHHHH
Confidence 699999999999999999987654333333333322 1222333334445666678888999877555555332110
Q ss_pred CCCCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHH
Q 009994 281 VPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSD 360 (520)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~D 360 (520)
....+.+++.+.+.+.+.+.+.. ........+|+....+.+|..+||+|+|||||.++|++|||+|+||+|
T Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~~~~pl~~~~~~~~~~~rv~LvGDAAH~~~P~~GqG~n~al~D 307 (391)
T PRK08020 237 LQAMSMAQLQQEIAAHFPARLGA---------VTPVAAGAFPLTRRHALQYVQPGLALVGDAAHTINPLAGQGVNLGYRD 307 (391)
T ss_pred HHCCCHHHHHHHHHHHhhhhccc---------eEeccccEeecceeehhhhccCcEEEEechhhccCCcccchhHHHHHH
Confidence 01112233333333222111110 111123456776667889999999999999999999999999999999
Q ss_pred HHHHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhcCC
Q 009994 361 IVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGG 432 (520)
Q Consensus 361 a~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g~ 432 (520)
|.+|+++|.+....+.+.....+|++|+++|+++...++..++.+.++|+.+ .+....+|+..+..+..-+
T Consensus 308 a~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~-~~~~~~~R~~~l~~~~~~~ 378 (391)
T PRK08020 308 VDALLDVLVNARSYGEAWASEAVLKRYQRRRMADNLLMQSGMDLFYAGFSNN-LPPLRFARNLGLMAAQRAG 378 (391)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhcCH
Confidence 9999999986532222233568999999999999999899999999999886 4567888999888776543
No 27
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=3.8e-42 Score=354.58 Aligned_cols=363 Identities=17% Similarity=0.205 Sum_probs=260.2
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEE
Q 009994 50 KNGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALF 129 (520)
Q Consensus 50 ~~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~ 129 (520)
+++..+||+||||||+|+++|+.|+++|++|+|+||.+... ..++..+.+++.++|+++|+++.+.... .......++
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~-~~r~~~l~~~s~~~l~~lgl~~~~~~~~-~~~~~~~~~ 80 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYA-DLRTTALLGPSIRFLERLGLWARLAPHA-APLQSMRIV 80 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCC-CcchhhCcHHHHHHHHHhCchhhhHhhc-ceeeEEEEE
Confidence 44667899999999999999999999999999999986543 3455668888999999999998886532 344555665
Q ss_pred ECCc-ccc---ccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEE
Q 009994 130 KDGK-STR---LSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRA 204 (520)
Q Consensus 130 ~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~ 204 (520)
..+. ... ..+...+....+.++.+++..+.+.|.+.+.+.+++. ++++ |+++.++++. +++...+|++ +
T Consensus 81 ~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~---~~v~~~~g~~--~ 154 (388)
T PRK07494 81 DATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDE---VTVTLADGTT--L 154 (388)
T ss_pred eCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe---EEEEECCCCE--E
Confidence 5332 111 1122122233445788999999999999998887787 5555 9999887775 4455566653 6
Q ss_pred ecCeEEEecCCcchhhhhhcCCCCCCcccceeeEEe-ccCCCCCCceEEEecCCCcEEEEecCCCeEEEEEEeCCCC---
Q 009994 205 YAPLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQK--- 280 (520)
Q Consensus 205 ~ad~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--- 280 (520)
+||+||+|||.+|.+|+.++++.....+...++.+. ....++......++.+.+++.++|+.++..++++..+.+.
T Consensus 155 ~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~~Pl~~~~~~~v~~~~~~~~~~ 234 (388)
T PRK07494 155 SARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHSRPHQNVSTEFHTEGGPFTQVPLPGRRSSLVWVVRPAEAER 234 (388)
T ss_pred EEeEEEEecCCCchhHHhcCCCceecCCCCEEEEEEEeccCCCCCEEEEEeCCCCcEEEEECCCCcEEEEEECCHHHHHH
Confidence 699999999999999999988654444444444332 2234444444556677889999999887777766544221
Q ss_pred CCCCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHH
Q 009994 281 VPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSD 360 (520)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~D 360 (520)
....+.+++.+.+.+.+.+.+. ..........||.....+.+|..+||+|+|||||.++|++|||||+||+|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~l~--------~~~~~~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~D 306 (388)
T PRK07494 235 LLALSDAALSAAIEERMQSMLG--------KLTLEPGRQAWPLSGQVAHRFAAGRTALVGEAAHVFPPIGAQGLNLGLRD 306 (388)
T ss_pred HHcCCHHHHHHHHHHHHhhhcC--------CeEEccCCcEeechHHHHHhhccCceEEEEhhhhcCCchhhcccchhHHH
Confidence 1122334444444332211111 00011234567777777788999999999999999999999999999999
Q ss_pred HHHHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhcCC
Q 009994 361 IVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGG 432 (520)
Q Consensus 361 a~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g~ 432 (520)
|.+|+++|.... .+.....+|++|+++|+++...+......+.++|... .+....+|+..+..+..-+
T Consensus 307 a~~La~~L~~~~---~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~~~l~~~~~~~ 374 (388)
T PRK07494 307 VATLVEIVEDRP---EDPGSAAVLAAYDRARRPDILSRTASVDLLNRSLLSD-FLPVQDLRAAGLHLLYSFG 374 (388)
T ss_pred HHHHHHHHHhcC---CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhhCH
Confidence 999999998642 2334578999999999999988888899999999876 5667888998877765443
No 28
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=100.00 E-value=5.6e-42 Score=352.63 Aligned_cols=357 Identities=20% Similarity=0.276 Sum_probs=253.0
Q ss_pred cEEEECCCHHHHHHHHHHhhCC-CeEEEEccCCCCCCc----eeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEE
Q 009994 56 DVIIVGAGVAGAALAHTLGKDG-RRVHVIERDVTEPDR----IVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFK 130 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G-~~V~v~Er~~~~~~~----~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 130 (520)
||+||||||+|+++|+.|+++| ++|+|+||.+..... .+++.++++++++|+++|+.+.+..... ...+..+..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~-~~~~~~~~~ 79 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFAT-PILDIHVSD 79 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcC-ccceEEEEc
Confidence 7999999999999999999999 999999998765443 3568899999999999999988866432 233444433
Q ss_pred CCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeE
Q 009994 131 DGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLT 209 (520)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~v 209 (520)
.+......+...++.....++.++|..|.+.|.+.+.+.+++++++++ |+++.++++. +++...+|++ ++||+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~---~~v~~~~g~~--~~ad~v 154 (382)
T TIGR01984 80 QGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY---VRVTLDNGQQ--LRAKLL 154 (382)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe---EEEEECCCCE--EEeeEE
Confidence 322111222222222334567899999999999999876689999876 9999877764 4455666763 669999
Q ss_pred EEecCCcchhhhhhcCCCCCCcccceeeEEe-ccCCCCCCceEEEecCCCcEEEEecCCC-eEEEEEEeCCCC---CCCC
Q 009994 210 IVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISST-EVRCLVDVPGQK---VPSI 284 (520)
Q Consensus 210 V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~---~~~~ 284 (520)
|+|||.+|.+|+.++++.....+....+... ....+.......++.+++++.++|.+++ ..++.+..+.+. ....
T Consensus 155 V~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 234 (382)
T TIGR01984 155 IAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQPHQGCAFERFTPHGPLALLPLKDNYRSSLVWCLPSKQADTIANL 234 (382)
T ss_pred EEecCCChHHHHHcCCCCcccccCCEEEEEEEEecCCCCCEEEEeeCCCCCeEECcCCCCCCEEEEEECCHHHHHHHHcC
Confidence 9999999999999987654433322333221 1222333333445667778889999887 666666554221 1122
Q ss_pred CchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHHHHH
Q 009994 285 SNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVL 364 (520)
Q Consensus 285 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da~~L 364 (520)
+.++..+.+.+.+.+.+. .......+..++.......+|..+||+|+|||||.++|++|||+|+||+||.+|
T Consensus 235 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~L 306 (382)
T TIGR01984 235 PDAEFLAELQQAFGWRLG--------KITQVGERKTYPLKLRIAETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRDVETL 306 (382)
T ss_pred CHHHHHHHHHHHHhhhcc--------CeEEcCCccEeecchhhhhheecCCEEEEeecccccCCccccchhhhHHHHHHH
Confidence 333344444333221111 011123445567666678889999999999999999999999999999999999
Q ss_pred HHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhc
Q 009994 365 RNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSL 430 (520)
Q Consensus 365 a~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~ 430 (520)
+++|.... .+...+++|+.|+++|+++...++.++..+.++|..+ ++....+|+..+..+.+
T Consensus 307 a~~L~~~~---~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~ 368 (382)
T TIGR01984 307 AEVLIDAR---IDLGTYALLQEYLRRRQFDQFITIGLTDGLNRLFSNH-IPLLRALRNLGLLALEN 368 (382)
T ss_pred HHHHHHhc---cCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhc
Confidence 99998653 1223467999999999999999999999999999865 55677888888777654
No 29
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=1.7e-41 Score=351.66 Aligned_cols=375 Identities=19% Similarity=0.225 Sum_probs=258.4
Q ss_pred CcEEEECCCHHHHHHHHHHhhCC--CeEEEEccCCCCC--CceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEE
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDG--RRVHVIERDVTEP--DRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFK 130 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G--~~V~v~Er~~~~~--~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 130 (520)
+||+||||||+||++|+.|+++| ++|+|+||.+... ...++..++++++++|+++|+++.+..... +...+.++.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~-~~~~~~~~~ 80 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQ-PITDMVITD 80 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcC-cccEEEEEe
Confidence 79999999999999999999996 9999999987532 246889999999999999999988876432 334444443
Q ss_pred C-Cccc----cccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEE
Q 009994 131 D-GKST----RLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRA 204 (520)
Q Consensus 131 ~-~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~ 204 (520)
. +... ...+........+.++.++|..+++.|.+.+.+. ++++++++ |+++.++++. +.+...+|+. +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~---v~v~~~~g~~--~ 154 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEAL-GIDLREATSVTDFETRDEG---VTVTLSDGSV--L 154 (403)
T ss_pred CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEcCCE---EEEEECCCCE--E
Confidence 2 1110 0111111111233456789999999999999887 89999887 9999877764 4455566764 5
Q ss_pred ecCeEEEecCCcchhhhhhcCCCCCCcccceeeEEe-ccCCCCCCceEEEecCCCcEEEEecCCCeEEEEEEeCCCCCC-
Q 009994 205 YAPLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQKVP- 282 (520)
Q Consensus 205 ~ad~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~- 282 (520)
+||+||+|||.+|.+|+.+++......+...+++.. ....+.......++.++++++++|+++++.++.+..+.+...
T Consensus 155 ~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~ 234 (403)
T PRK07333 155 EARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHERPHGGRAEEHFLPAGPFAILPLKGNRSSLVWTERTADAER 234 (403)
T ss_pred EeCEEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCCCCCCEEEEEeCCCCceEEeECCCCCeEEEEECCHHHHHH
Confidence 699999999999999999987654444444444332 122223334455667788899999999887776654321100
Q ss_pred --CCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHH
Q 009994 283 --SISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSD 360 (520)
Q Consensus 283 --~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~D 360 (520)
....+...+.+.+.+...+++ + ........++.......+|..|||+|+|||||.++|++|||+|+||+|
T Consensus 235 ~~~~~~~~~~~~l~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~D 306 (403)
T PRK07333 235 LVALDDLVFEAELEQRFGHRLGE-L-------KVLGKRRAFPLGLTLARSFVAPRFALVGDAAHGIHPIAGQGLNLGLKD 306 (403)
T ss_pred HHCCCHHHHHHHHHHHhhhhcCc-e-------EeccCccEeechhhhhhhccCCCEEEEechhhcCCCccccchhhhHHH
Confidence 111122223333222211110 0 001122345666567788999999999999999999999999999999
Q ss_pred HHHHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhcCCCCchhHHH
Q 009994 361 IVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVA 440 (520)
Q Consensus 361 a~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g~~~~~~~~~ 440 (520)
|.+|+++|......+.+...+.+|++|+++|+++...++..++.+.++|..+ ++....+|+..+..+..-+...+..+.
T Consensus 307 a~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~ 385 (403)
T PRK07333 307 VAALAEVVVEAARLGLDIGSLDVLERYQRWRRFDTVRMGVTTDVLNRLFSND-STLLRSVRDIGLGLVDRLPKLKSFFIR 385 (403)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999986532112223578999999999999999999999999999865 566788899887776544333333333
Q ss_pred hhhcC
Q 009994 441 LLSGL 445 (520)
Q Consensus 441 l~~~~ 445 (520)
...|+
T Consensus 386 ~~~g~ 390 (403)
T PRK07333 386 QAAGL 390 (403)
T ss_pred HHhCc
Confidence 33343
No 30
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=100.00 E-value=9.8e-41 Score=344.06 Aligned_cols=361 Identities=21% Similarity=0.227 Sum_probs=240.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCC--CCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEEC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTE--PDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKD 131 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~--~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 131 (520)
++||+||||||+||++|+.|+++|++|+|+||++.. ....++..++++++++|+++|+.+.+.+... ...++.++.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~-~~~~~~~~~~ 80 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGL-VHDGIELRFD 80 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCC-ccCcEEEEEC
Confidence 579999999999999999999999999999999753 2345567799999999999999999876433 4456666665
Q ss_pred CccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEe-eCCeEEEEEEEeCCCcEEEEecCeE
Q 009994 132 GKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLE-ENGTIKGVQYKTKDGQELRAYAPLT 209 (520)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~-~~~~v~gv~v~~~~g~~~~~~ad~v 209 (520)
++.....++ ..........++|..+.+.|.+.+.+. ++++++++ ++++++ +++. ..|++. .+|++.+++||+|
T Consensus 81 g~~~~~~~~--~~~~~~~~~~~~~~~l~~~Ll~~a~~~-gv~v~~~~~v~~i~~~~~~~-~~V~~~-~~G~~~~i~ad~v 155 (392)
T PRK08243 81 GRRHRIDLT--ELTGGRAVTVYGQTEVTRDLMAARLAA-GGPIRFEASDVALHDFDSDR-PYVTYE-KDGEEHRLDCDFI 155 (392)
T ss_pred CEEEEeccc--cccCCceEEEeCcHHHHHHHHHHHHhC-CCeEEEeeeEEEEEecCCCc-eEEEEE-cCCeEEEEEeCEE
Confidence 554333332 111122334567888888998888765 78998887 888876 4443 235542 4676667889999
Q ss_pred EEecCCcchhhhhhcCCCCCC-ccc-ceeeEEeccCCCCCCceEEEecCCCcE-EEEecCCCeEEEEEEeCC-CCCCCCC
Q 009994 210 IVCDGCFSNLRRSLCKPKVDV-PSC-FVGLVLENCQLPFANHGHVILADPSPI-LFYPISSTEVRCLVDVPG-QKVPSIS 285 (520)
Q Consensus 210 V~AdG~~S~vR~~l~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~-~~~~~~~ 285 (520)
|+|||.+|.+|+.++...... ... ..++.....+.+.......+...+..+ ++++.+++..++++.++. +....+.
T Consensus 156 VgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (392)
T PRK08243 156 AGCDGFHGVSRASIPAGALRTFERVYPFGWLGILAEAPPVSDELIYANHERGFALCSMRSPTRSRYYLQCPLDDKVEDWS 235 (392)
T ss_pred EECCCCCCchhhhcCcchhhceecccCceEEEEeCCCCCCCCceEEeeCCCceEEEecCCCCcEEEEEEecCCCCcccCC
Confidence 999999999999997643111 100 011111111222211122333333344 444445555566665542 2233344
Q ss_pred chHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHHHHHH
Q 009994 286 NGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLR 365 (520)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da~~La 365 (520)
.++..+.+++.+.+.....+.. .+......++.....+.+|++|||+|+|||||.++|++|||+|+||+||.+|+
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La 310 (392)
T PRK08243 236 DERFWDELRRRLPPEDAERLVT-----GPSIEKSIAPLRSFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLA 310 (392)
T ss_pred hhHHHHHHHHhcCccccccccc-----CccccccceeeeeceeccceeCCEEEEecccccCCCCcCcchhHHHHHHHHHH
Confidence 4555555555443221111100 00001122345555677899999999999999999999999999999999999
Q ss_pred HhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCC--ChhHHHHHHHHHHHHHh
Q 009994 366 NLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSS--PDQARKEMRQACFDYLS 429 (520)
Q Consensus 366 ~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~--~~~~~~~lr~~~~~~~~ 429 (520)
|+|...... ..+++|++|+++|++++..++..+..+.+++... +......+|+.+++.+.
T Consensus 311 ~~L~~~~~~----~~~~~L~~Ye~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (392)
T PRK08243 311 RALVEFYRE----GDTALLDAYSATALRRVWKAERFSWWMTSMLHRFPDDDPFDQRIQLAELDYLT 372 (392)
T ss_pred HHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHh
Confidence 999865321 2468999999999999999999999888887653 23455667777766554
No 31
>PRK06996 hypothetical protein; Provisional
Probab=100.00 E-value=8.7e-41 Score=344.99 Aligned_cols=358 Identities=15% Similarity=0.169 Sum_probs=252.2
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHhhCC----CeEEEEccCCCCC--CceeeeeeccchHHHHHhcCchhHHhhccccee
Q 009994 50 KNGSPTDVIIVGAGVAGAALAHTLGKDG----RRVHVIERDVTEP--DRIVGELLQPGGYLKLVELGLEDCVEEIDAQQV 123 (520)
Q Consensus 50 ~~~~~~dV~IVGaG~aGl~~A~~La~~G----~~V~v~Er~~~~~--~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~ 123 (520)
+..+.+||+||||||+|+++|+.|+++| ++|+|+|+.+... ..+++..++++++++|+++|+++... .+.
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~----~~~ 82 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADA----TPI 82 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcC----Ccc
Confidence 3466789999999999999999999997 4799999985332 24578899999999999999987521 122
Q ss_pred ceEEEEECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCc-E
Q 009994 124 LGYALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQ-E 201 (520)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~-~ 201 (520)
....++..+......+...+......++.++|..|++.|.+.+.+. ++++..++ ++++.++++. |++...+++ .
T Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~-g~~~~~~~~v~~~~~~~~~---v~v~~~~~~g~ 158 (398)
T PRK06996 83 EHIHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGT-PVRWLTSTTAHAPAQDADG---VTLALGTPQGA 158 (398)
T ss_pred cEEEEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhC-CCEEEcCCeeeeeeecCCe---EEEEECCCCcc
Confidence 3344443332212223223333344578999999999999999987 68888887 8888777664 445444331 1
Q ss_pred EEEecCeEEEecCC-cchhhhhhcCCCCCCcccceeeEEe-ccCCCCCCceEEEecCCCcEEEEecCCCe---EEEEEEe
Q 009994 202 LRAYAPLTIVCDGC-FSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTE---VRCLVDV 276 (520)
Q Consensus 202 ~~~~ad~vV~AdG~-~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~ 276 (520)
.+++||+||+|||. +|.+|+.+++......+...++... ....+.+...+..+.+.+++.++|..++. +++++..
T Consensus 159 ~~i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~~~lp~~~~~~~~~~~v~~~ 238 (398)
T PRK06996 159 RTLRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAPRPGWAWERFTHEGPLALLPLGGPRQADYALVWCC 238 (398)
T ss_pred eEEeeeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCCCCCEEEEEecCCCCeEEeECCCCCCCcEEEEEEC
Confidence 35789999999997 5788999887655555444444432 22333343344456778889999998654 4555544
Q ss_pred CCCC---CCCCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCch
Q 009994 277 PGQK---VPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGG 353 (520)
Q Consensus 277 ~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G 353 (520)
+.+. ....+.++..+.+.+.+.+.++. + ........++.....+.+|.+|||+|+|||||.++|++|||
T Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~-------~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG 310 (398)
T PRK06996 239 APDEAARRAALPDDAFLAELGAAFGTRMGR-F-------TRIAGRHAFPLGLNAARTLVNGRIAAVGNAAQTLHPVAGQG 310 (398)
T ss_pred CHHHHHHHHcCCHHHHHHHHHHHhccccCc-e-------EEecceEEEeeecccccceecCCEEEEEhhhccCCcccchh
Confidence 4221 11233344555555544332221 1 00112335667777788999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhc
Q 009994 354 MTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSL 430 (520)
Q Consensus 354 ~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~ 430 (520)
+|+||+||.+|+++|.... ....+|++|+++|+++...++..++.+.++|+.. ++....+|+..+..+..
T Consensus 311 ~n~ai~Da~~La~~L~~~~------~~~~~L~~Y~~~R~~~~~~~~~~s~~l~~~~~~~-~~~~~~~R~~~l~~~~~ 380 (398)
T PRK06996 311 LNLGLRDAHTLADALSDHG------ATPLALATFAARRALDRRVTIGATDLLPRLFTVD-SRPLAHLRGAALTALEF 380 (398)
T ss_pred HHHHHHHHHHHHHHHHhcC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHhHHHHHHhh
Confidence 9999999999999996421 1346799999999999999999999999999876 55677888888776654
No 32
>PRK06753 hypothetical protein; Provisional
Probab=100.00 E-value=4.3e-40 Score=337.52 Aligned_cols=351 Identities=18% Similarity=0.227 Sum_probs=245.8
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEEC-Cc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKD-GK 133 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~-~~ 133 (520)
+||+||||||+||++|+.|+++|++|+|+||++.......|..+++++++.|+.+|+.+.+.... .....+.++.. |+
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~-~~~~~~~~~~~~g~ 79 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAG-QILSTMNLLDDKGT 79 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcC-CcccceeEEcCCCC
Confidence 48999999999999999999999999999999877777788899999999999999998876543 24455555543 32
Q ss_pred cccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEe
Q 009994 134 STRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVC 212 (520)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~A 212 (520)
.. ...+. .....++.++|..|.+.|.+.+. ..++++++ |+++.++++. +++...+|++ +++|+||+|
T Consensus 80 ~~-~~~~~---~~~~~~~~i~R~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~---v~v~~~~g~~--~~~~~viga 147 (373)
T PRK06753 80 LL-NKVKL---KSNTLNVTLHRQTLIDIIKSYVK---EDAIFTGKEVTKIENETDK---VTIHFADGES--EAFDLCIGA 147 (373)
T ss_pred EE-eeccc---ccCCccccccHHHHHHHHHHhCC---CceEEECCEEEEEEecCCc---EEEEECCCCE--EecCEEEEC
Confidence 21 11111 12334578999999999998875 35778876 9999877664 4555677764 569999999
Q ss_pred cCCcchhhhhhcCCCCCCcccceeeE--EeccCCCCCCceEEEecCCCcEEEEecCCCeEEEEEEeCCCCCCCCCchHHH
Q 009994 213 DGCFSNLRRSLCKPKVDVPSCFVGLV--LENCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQKVPSISNGEMA 290 (520)
Q Consensus 213 dG~~S~vR~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (520)
||.+|.+|+.++.........+..+. .....++.++....++..+++++++|..+++..|.+.+..............
T Consensus 148 dG~~S~vR~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (373)
T PRK06753 148 DGIHSKVRQSVNADSKVRYQGYTCFRGLIDDIDLKLPDCAKEYWGTKGRFGIVPLLNNQAYWFITINAKERDPKYSSFGK 227 (373)
T ss_pred CCcchHHHHHhCCCCCceEcceEEEEEEeccccccCccceEEEEcCCCEEEEEEcCCCeEEEEEEeccccCCcccccccH
Confidence 99999999999764322211122221 1122223333444566777888999999888777776542211111111112
Q ss_pred HHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCC-CCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHHHHHHHhcC
Q 009994 291 NYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRS-MPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLK 369 (520)
Q Consensus 291 ~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da~~La~~L~ 369 (520)
+.+.+.+. .+++.+.+.+ +......+..++... .+..+|..+||+|+|||||.++|+.|||+|+||+||..|++.|.
T Consensus 228 ~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~ 305 (373)
T PRK06753 228 PHLQAYFN-HYPNEVREIL-DKQSETGILHHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLN 305 (373)
T ss_pred HHHHHHHh-cCChHHHHHH-HhCCcccceeeccccccccccccCCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhh
Confidence 23333332 3444444333 222222333333322 34567889999999999999999999999999999999999996
Q ss_pred ccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHH
Q 009994 370 PLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYL 428 (520)
Q Consensus 370 ~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~ 428 (520)
. .+.+++|+.|+++|++++..++..++.+.++++.+ .+....+|+..+..+
T Consensus 306 ~-------~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~-~~~~~~~r~~~l~~~ 356 (373)
T PRK06753 306 A-------YDFEKALQRYDKIRVKHTAKVIKRSRKIGKIAQIE-SKLLVALRNRVMKRM 356 (373)
T ss_pred h-------ccHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHhcC-CchHHHHHHHHHHhC
Confidence 3 24578999999999999999999999999988765 455677888876654
No 33
>PRK07588 hypothetical protein; Provisional
Probab=100.00 E-value=3.3e-40 Score=340.33 Aligned_cols=357 Identities=18% Similarity=0.208 Sum_probs=246.0
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEEC-Cc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKD-GK 133 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~-~~ 133 (520)
.||+||||||+||++|+.|+++|++|+|+||.+.......+..++++++++|+++|+++.+.+... ....+.++.. +.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~-~~~~~~~~~~~g~ 79 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGY-QIEHVRSVDPTGR 79 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccC-CccceEEEcCCCC
Confidence 489999999999999999999999999999997655555667788999999999999988876432 3344555542 32
Q ss_pred cccccCCCcCCCC--CccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEE
Q 009994 134 STRLSYPLEKFHA--DVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTI 210 (520)
Q Consensus 134 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV 210 (520)
. ...++...... ....+.++|..|.+.|.+.+.. ++++++++ |++++++++. |++...+|++ +++|+||
T Consensus 80 ~-~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~--~v~i~~~~~v~~i~~~~~~---v~v~~~~g~~--~~~d~vI 151 (391)
T PRK07588 80 R-KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG--QVETIFDDSIATIDEHRDG---VRVTFERGTP--RDFDLVI 151 (391)
T ss_pred E-EEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc--CeEEEeCCEEeEEEECCCe---EEEEECCCCE--EEeCEEE
Confidence 2 12222111111 1122578999999999886643 69999997 9999887764 5566677875 4599999
Q ss_pred EecCCcchhhhhhcCCCCCCcccceeeEEecc----CCCCCCce-EEEecCCCcEEEEecCCCeEEEEEEeCCC-CCCCC
Q 009994 211 VCDGCFSNLRRSLCKPKVDVPSCFVGLVLENC----QLPFANHG-HVILADPSPILFYPISSTEVRCLVDVPGQ-KVPSI 284 (520)
Q Consensus 211 ~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~ 284 (520)
+|||.+|.+|+.+...... ...+.+..+... ..+.+... ..+.+++.++..+|+++++..+.+....+ ..+..
T Consensus 152 gADG~~S~vR~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 230 (391)
T PRK07588 152 GADGLHSHVRRLVFGPERD-FEHYLGCKVAACVVDGYRPRDERTYVLYNEVGRQVARVALRGDRTLFLFIFRAEHDNPPL 230 (391)
T ss_pred ECCCCCccchhhccCCccc-eEEEcCcEEEEEEcCCCCCCCCceEEEEeCCCCEEEEEecCCCCeEEEEEEEcCCccccC
Confidence 9999999999987533221 122333222111 12222222 33445566889999988876565554322 22334
Q ss_pred CchHHHHHHHHhcCCCCChhhHHHHHHhhhc-CCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHHHH
Q 009994 285 SNGEMANYLKAMVAPQVPPELHEAFVSAVER-GNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVV 363 (520)
Q Consensus 285 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da~~ 363 (520)
+.++..+.+++.+... ++.... +...+.. ..+...+.......+|..|||+|+|||||.++|+.|||+|+||+||..
T Consensus 231 ~~~~~~~~l~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~ 308 (391)
T PRK07588 231 TPAEEKQLLRDQFGDV-GWETPD-ILAALDDVEDLYFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYV 308 (391)
T ss_pred CHHHHHHHHHHHhccC-CccHHH-HHHhhhcccchheeeeeeeccCccccCCEEEEEccccCCCCccCCcHHHHHHHHHH
Confidence 5556677777655432 221111 1122211 122222223345678999999999999999999999999999999999
Q ss_pred HHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHh
Q 009994 364 LRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLS 429 (520)
Q Consensus 364 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~ 429 (520)
|+++|.... ...+.+|+.|+++|++++..++..++.+.++|+.+ ++....+|+..+..+.
T Consensus 309 La~~L~~~~-----~~~~~al~~Y~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~~~~~~~~ 368 (391)
T PRK07588 309 LAGELARAG-----GDHRRAFDAYEKRLRPFIAGKQAAAAKFLSVFAPK-TRFGLYVRNIAMKIMN 368 (391)
T ss_pred HHHHHHhcc-----CCHHHHHHHHHHHHHHHHHHHHhhcccccccccCC-CHHHHHHHHHHHHHhc
Confidence 999997532 13568999999999999999999999999998765 5667788998877665
No 34
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=100.00 E-value=4.4e-40 Score=339.25 Aligned_cols=363 Identities=19% Similarity=0.247 Sum_probs=252.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCc-----eeeeeeccchHHHHHhcCchhHHhhcccceeceE
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDR-----IVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGY 126 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~-----~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~ 126 (520)
.+.+||+||||||+|+++|+.|++.|++|+|+||++..... .++..++++++++|+++|+++.+......+....
T Consensus 3 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 82 (388)
T PRK07608 3 HMKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDM 82 (388)
T ss_pred CccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEE
Confidence 34689999999999999999999999999999999765432 2447799999999999999988754333333444
Q ss_pred EEEECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEec
Q 009994 127 ALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYA 206 (520)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~gv~v~~~~g~~~~~~a 206 (520)
.++.+.. ..+.+.......+...+.+++..+++.|.+.+++.++++++..+++++.++++. +.+...+|+ +++|
T Consensus 83 ~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~~~~v~~i~~~~~~---~~v~~~~g~--~~~a 156 (388)
T PRK07608 83 RVFGDAH-ARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWFPARAQGLEVDPDA---ATLTLADGQ--VLRA 156 (388)
T ss_pred EEEECCC-ceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEEcceeEEEEecCCe---EEEEECCCC--EEEe
Confidence 4443221 112211111112233567899999999999999886698884459998877664 445566665 4669
Q ss_pred CeEEEecCCcchhhhhhcCCCCCCcccceeeEEe-ccCCCCCCceEEEecCCCcEEEEecCCCeEEEEEEeCCCC---CC
Q 009994 207 PLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQK---VP 282 (520)
Q Consensus 207 d~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~ 282 (520)
|+||+|||.+|.+|+.++...........++... ....+..+..+.++.++++++++|++++...+.+..+... ..
T Consensus 157 ~~vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 236 (388)
T PRK07608 157 DLVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAERPHRGTAYQWFRDDGILALLPLPDGHVSMVWSARTAHADELL 236 (388)
T ss_pred eEEEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecCCCCCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHH
Confidence 9999999999999999987654333333333322 2222333345567778889999999998776665543211 11
Q ss_pred CCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHHH
Q 009994 283 SISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 362 (520)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da~ 362 (520)
..+++++.+.+.+...+.+ ..+ ........++........|..+||+|+|||||.++|++|||+|+||+||.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~da~ 308 (388)
T PRK07608 237 ALSPEALAARVERASGGRL-GRL-------ECVTPAAGFPLRLQRVDRLVAPRVALVGDAAHLIHPLAGQGMNLGLRDVA 308 (388)
T ss_pred CCCHHHHHHHHHHHHHHhc-CCc-------eecCCcceeecchhhhhhhhcCceEEEeccccccCCccccccchhHHHHH
Confidence 2233445555544322111 000 00112233555555677899999999999999999999999999999999
Q ss_pred HHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhc
Q 009994 363 VLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSL 430 (520)
Q Consensus 363 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~ 430 (520)
+|+++|...... .+....++|++|+++|+++...++..++.+.++|..+ ++....+|+..+..+..
T Consensus 309 ~La~~L~~~~~~-~~~~~~~~l~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~ 374 (388)
T PRK07608 309 ALADVLAGREPF-RDLGDLRLLRRYERARREDILALQVATDGLQRLFALP-GPLARWLRNAGMALVGA 374 (388)
T ss_pred HHHHHHHHhhcc-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhh
Confidence 999999764211 1122347999999999999999999999999999876 55677889888776653
No 35
>PRK06847 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=334.01 Aligned_cols=359 Identities=21% Similarity=0.262 Sum_probs=246.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCc
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGK 133 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 133 (520)
..||+||||||+||++|+.|++.|++|+|+||++.......+..++++++++|+++|+.+.+.+... ......++....
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~-~~~~~~~~~~~g 82 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGF-GFDGVDLFDPDG 82 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCC-CccceEEECCCC
Confidence 4699999999999999999999999999999998776677888999999999999999987766432 334444443222
Q ss_pred cccccCCCcCCC--CCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEE
Q 009994 134 STRLSYPLEKFH--ADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTI 210 (520)
Q Consensus 134 ~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV 210 (520)
.....++..... ..+....++|..+.+.|.+.+.+. ++++++++ |+++..+++. +.+...+|++ +.+|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~---~~v~~~~g~~--~~ad~vI 156 (375)
T PRK06847 83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAA-GADVRLGTTVTAIEQDDDG---VTVTFSDGTT--GRYDLVV 156 (375)
T ss_pred CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHh-CCEEEeCCEEEEEEEcCCE---EEEEEcCCCE--EEcCEEE
Confidence 111122211111 112345688999999999999876 78999886 8898877664 4455667764 5699999
Q ss_pred EecCCcchhhhhhcCCCCCCcccceeeEEeccCCC---CCCceEEEecCCCcEEEEecCCCeEEEEEEeCCCCCCCCCch
Q 009994 211 VCDGCFSNLRRSLCKPKVDVPSCFVGLVLENCQLP---FANHGHVILADPSPILFYPISSTEVRCLVDVPGQKVPSISNG 287 (520)
Q Consensus 211 ~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 287 (520)
+|||.+|.+|+.+...... ..+.+.......++ .......+.++++.+.++|.+++...+++..+.......+.+
T Consensus 157 ~AdG~~s~~r~~l~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 234 (375)
T PRK06847 157 GADGLYSKVRSLVFPDEPE--PEYTGQGVWRAVLPRPAEVDRSLMYLGPTTKAGVVPLSEDLMYLFVTEPRPDNPRIEPD 234 (375)
T ss_pred ECcCCCcchhhHhcCCCCC--ceeccceEEEEEecCCCCccceEEEeCCCcEEEEEcCCCCeEEEEEeccCcccccCChH
Confidence 9999999999988432111 11222211111111 112335666777788899998876655554443322333444
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHhhh-cCCeEEecCCCC-CCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHHHHHH
Q 009994 288 EMANYLKAMVAPQVPPELHEAFVSAVE-RGNIRTMPNRSM-PADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLR 365 (520)
Q Consensus 288 ~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~-~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da~~La 365 (520)
+..+.+++.+... ++.....+.+.+. ...+..++.... ...+|..|||+|+|||||.++|++|||+|+||+||.+|+
T Consensus 235 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La 313 (375)
T PRK06847 235 TLAALLRELLAPF-GGPVLQELREQITDDAQVVYRPLETLLVPAPWHRGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLA 313 (375)
T ss_pred HHHHHHHHHHhhc-CchHHHHHHHhcCCccceeeccHhhccCCCCccCCeEEEEechhccCCCCccccHHHHHHHHHHHH
Confidence 5556666544332 2222223333332 223344444432 345799999999999999999999999999999999999
Q ss_pred HhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCCh--hHHHHHHHHHHHHH
Q 009994 366 NLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPD--QARKEMRQACFDYL 428 (520)
Q Consensus 366 ~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~--~~~~~lr~~~~~~~ 428 (520)
++|... ...+++|+.|+++|+|++..++..++.+...+..... .....+|+.++.++
T Consensus 314 ~~L~~~------~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T PRK06847 314 EELARH------DSLEAALQAYYARRWERCRMVVEASARIGRIEIEGGDKAEHAGLMRESMELLA 372 (375)
T ss_pred HHHhhC------CcHHHHHHHHHHHHHHHHHHHHHHHHHhhheecCCCCccchHHHHHHHHHHhc
Confidence 999752 3467899999999999999999999998888754422 14456777776654
No 36
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=2.7e-40 Score=341.63 Aligned_cols=363 Identities=21% Similarity=0.240 Sum_probs=247.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhC---CCeEEEEccCCCC-----CCceeeeeeccchHHHHHhcCchhHHhhcccceec
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKD---GRRVHVIERDVTE-----PDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVL 124 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~---G~~V~v~Er~~~~-----~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~ 124 (520)
+.+||+||||||+|+++|+.|+++ |++|+|+||.... ....++..++++++++|+++|+++.+..... ...
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~-~~~ 80 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCAT-PIT 80 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcC-Ccc
Confidence 468999999999999999999998 9999999995322 1124678899999999999999988876432 223
Q ss_pred eEEEEECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEE
Q 009994 125 GYALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELR 203 (520)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~ 203 (520)
...+...+......+...+......++.++|..+.+.|.+.+.+.+++++++++ |+++.++++. +.+...+|..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~---~~v~~~~g~~-- 155 (395)
T PRK05732 81 HIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS---VRVTLDDGET-- 155 (395)
T ss_pred EEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe---EEEEECCCCE--
Confidence 333332222211111111222223456788999999999998887789999876 9998876664 4455566653
Q ss_pred EecCeEEEecCCcchhhhhhcCCCCCCcccceeeEEe-ccCCCCCCceEEEecCCCcEEEEecCCCeEEEEEEeCCCC--
Q 009994 204 AYAPLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQK-- 280 (520)
Q Consensus 204 ~~ad~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-- 280 (520)
+++|+||+|||.+|.+|+.+++...........+... ....+........+.++++++++|.++++..+++.++.+.
T Consensus 156 ~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~g~~~~~~~~~~~~~~ 235 (395)
T PRK05732 156 LTGRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEAHQGRAFERFTEHGPLALLPMSDGRCSLVWCHPLEDAE 235 (395)
T ss_pred EEeCEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCCCCCEEEEeecCCCCEEEeECCCCCeEEEEECCHHHHH
Confidence 5699999999999999999987543333222222211 1111112222334556778889999998877776654221
Q ss_pred -CCCCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHH
Q 009994 281 -VPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALS 359 (520)
Q Consensus 281 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~ 359 (520)
....+.++..+.+.+.+.. .+ ....+......+++....+.+|..|||+|+|||||.++|++|||+|+||+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~l~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~al~ 307 (395)
T PRK05732 236 EVLSWSDAQFLAELQQAFGW----RL----GRITHAGKRSAYPLALVTAAQQISHRLALVGNAAQTLHPIAGQGFNLGLR 307 (395)
T ss_pred HHHcCCHHHHHHHHHHHHHh----hh----cceeecCCcceecccccchhhhccCcEEEEeecccccCCccccccchHHH
Confidence 1122333333333332210 00 00111123345566666677899999999999999999999999999999
Q ss_pred HHHHHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhc
Q 009994 360 DIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSL 430 (520)
Q Consensus 360 Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~ 430 (520)
||.+|+++|..+.....+...+++|+.|+++|++++..++..++.+.++|..+ ......+|+..+..+..
T Consensus 308 Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~ 377 (395)
T PRK05732 308 DVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQDREATIGFTDGLVRLFANR-WAPLVVGRNLGLMAMDL 377 (395)
T ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHcc
Confidence 99999999965421111112357899999999999999999999999999765 45677789888777654
No 37
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=100.00 E-value=3.9e-41 Score=342.23 Aligned_cols=338 Identities=23% Similarity=0.292 Sum_probs=222.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhccccee-ceEEEEEC-
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQV-LGYALFKD- 131 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~-~~~~~~~~- 131 (520)
++||+||||||+||++|+.|+++|++|+|+||++......++..+.++++++|+++|+.+.+........ ....++..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~ 80 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGI 80 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEET
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeeccc
Confidence 3799999999999999999999999999999998888888999999999999999999998877553222 12222222
Q ss_pred -Ccc-----ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEE
Q 009994 132 -GKS-----TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRA 204 (520)
Q Consensus 132 -~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~ 204 (520)
+.. .............+....++|..|++.|++.+++. ++++.+++ ++++.++++++..+.....+|+..++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i 159 (356)
T PF01494_consen 81 SDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEER-GVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETI 159 (356)
T ss_dssp TTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHH-TEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEE
T ss_pred CCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhh-hhhheeeeecccccccccccccccccccCCceeEE
Confidence 110 00000011112334456789999999999999988 59999998 99999998876633333346777788
Q ss_pred ecCeEEEecCCcchhhhhhcCCCCCCc----ccceeeEEeccCCCCCCceEEEe--cCCCcEEEEecCC-CeEEEEEEeC
Q 009994 205 YAPLTIVCDGCFSNLRRSLCKPKVDVP----SCFVGLVLENCQLPFANHGHVIL--ADPSPILFYPISS-TEVRCLVDVP 277 (520)
Q Consensus 205 ~ad~vV~AdG~~S~vR~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~-~~~~~~~~~~ 277 (520)
+||+||+|||.+|.+|+.+++...... ..+.++... ..++......+++ .+.+.++++|..+ +...+.+.++
T Consensus 160 ~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 238 (356)
T PF01494_consen 160 EADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFD-SDLSDPWEDHCFIYSPPSGGFAIIPLENGDRSRFVWFLP 238 (356)
T ss_dssp EESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEE-CHSHTTTSCEEEEEEETTEEEEEEEETTTTEEEEEEEEE
T ss_pred EEeeeecccCcccchhhhccccccCccccccccccccccc-cccccccccccccccccccceeEeeccCCccceEEEeee
Confidence 999999999999999999986532222 112222222 2333221112332 2334457899988 4444445443
Q ss_pred CCC-CCCCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhH
Q 009994 278 GQK-VPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTV 356 (520)
Q Consensus 278 ~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~ 356 (520)
... ......+...+.+.+.+.+.+..... . .+...+..+++......+|.+|||+|+|||||.++|++|||+|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~GqG~n~ 313 (356)
T PF01494_consen 239 FDESKEERPEEFSPEELFANLPEIFGPDLL----E-TEIDEISAWPIPQRVADRWVKGRVLLIGDAAHAMDPFSGQGINM 313 (356)
T ss_dssp TTTTTCCSTHCHHHHHHHHHHHHHHHTCHH----H-HEEEEEEEEEEEEEEESSSEETTEEE-GGGTEEE-CCTSHHHHH
T ss_pred cccccccccccccccccccccccccccccc----c-cccccccccccccccccccccceeEEeccceeeecccccCCCCc
Confidence 221 11112222222222221111101100 1 12224455666666778899999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHH
Q 009994 357 ALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTL 401 (520)
Q Consensus 357 al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~ 401 (520)
||+||..|+++|..+. .+...+++|+.|+++|++++..+.+.
T Consensus 314 Ai~da~~La~~L~~~~---~g~~~~~~l~~Y~~~r~~~~~~~~~~ 355 (356)
T PF01494_consen 314 AIEDAAALAELLAAAL---KGEASEEALKAYEQERRPRARKAVQF 355 (356)
T ss_dssp HHHHHHHHHHHHHHHH---TTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999764 23445789999999999999887654
No 38
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=100.00 E-value=2.7e-39 Score=332.45 Aligned_cols=358 Identities=21% Similarity=0.257 Sum_probs=233.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCC--CceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEEC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP--DRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKD 131 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~--~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 131 (520)
.+||+||||||+|+++|+.|+++|++|+|+||.+... ...++..+.++++++|+++|+++.+.... ....+..++.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~-~~~~~~~~~~~ 80 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREG-LVHEGTEIAFD 80 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcC-ceecceEEeeC
Confidence 4799999999999999999999999999999997532 23455668999999999999999887744 33445555554
Q ss_pred CccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEE
Q 009994 132 GKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTI 210 (520)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV 210 (520)
+......++ ..........+.+..+...|.+.+.+. ++.+++++ ++.+.+.++....|++. .+|+..+++||+||
T Consensus 81 ~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~~~~~~v~~~~~~~~~~~V~~~-~~g~~~~i~adlvI 156 (390)
T TIGR02360 81 GQRFRIDLK--ALTGGKTVMVYGQTEVTRDLMEAREAA-GLTTVYDADDVRLHDLAGDRPYVTFE-RDGERHRLDCDFIA 156 (390)
T ss_pred CEEEEEecc--ccCCCceEEEeCHHHHHHHHHHHHHhc-CCeEEEeeeeEEEEecCCCccEEEEE-ECCeEEEEEeCEEE
Confidence 433223332 111111112345678888899988776 56777775 77776533322245553 26765567899999
Q ss_pred EecCCcchhhhhhcCCCCCCcc-----cceeeEEeccCCCCCCceEEEecCCCcEEEEecCC-CeEEEEEEeCCC-CCCC
Q 009994 211 VCDGCFSNLRRSLCKPKVDVPS-----CFVGLVLENCQLPFANHGHVILADPSPILFYPISS-TEVRCLVDVPGQ-KVPS 283 (520)
Q Consensus 211 ~AdG~~S~vR~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~-~~~~ 283 (520)
+|||.+|.||++++........ .+.++.. ..+.......+.+.+..+.++|+.+ +..+|++.++.. ....
T Consensus 157 GADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (390)
T TIGR02360 157 GCDGFHGVSRASIPAEVLKEFERVYPFGWLGILS---ETPPVSHELIYSNHERGFALCSMRSATRSRYYVQVPLTDKVED 233 (390)
T ss_pred ECCCCchhhHHhcCcccceeeeccCCcceEEEec---CCCCCCCceEEEeCCCceEEEeccCCCcceEEEEcCCCCChhh
Confidence 9999999999998653321111 1122221 1121222234455666677777754 333455555422 2233
Q ss_pred CCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHHHH
Q 009994 284 ISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVV 363 (520)
Q Consensus 284 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da~~ 363 (520)
+..+...+.+.+.+. +.+.+.+.. .+.......+.......+|.+|||+|+|||||.++|+.|||+|+||+||.+
T Consensus 234 ~~~~~~~~~l~~~~~----~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~grvvLvGDAAH~~~P~~GQG~n~aieDA~~ 308 (390)
T TIGR02360 234 WSDDRFWAELKRRLP----SEAAERLVT-GPSIEKSIAPLRSFVCEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVHY 308 (390)
T ss_pred CChhHHHHHHHHhcC----chhhhhhcc-CCccceeeeeHHhhccccCccCCEEEEEccccCCCCCcCCchhHHHHHHHH
Confidence 333444455544332 222222111 111112333455566778999999999999999999999999999999999
Q ss_pred HHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCC--hhHHHHHHHHHHHHH
Q 009994 364 LRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSP--DQARKEMRQACFDYL 428 (520)
Q Consensus 364 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~--~~~~~~lr~~~~~~~ 428 (520)
|+++|..... ...+.+|+.|+++|++++..++..|+.+.+++...+ ++....++.++++++
T Consensus 309 La~~L~~~~~----~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (390)
T TIGR02360 309 LYEALLEHYQ----EGSSAGIEGYSARALARVWKAERFSWWMTSLLHRFPDTDAFDQRIQQAELEYL 371 (390)
T ss_pred HHHHHHHHhc----cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Confidence 9999975321 235679999999999999999999999888876443 334444555655543
No 39
>PRK06475 salicylate hydroxylase; Provisional
Probab=100.00 E-value=5.1e-39 Score=332.20 Aligned_cols=354 Identities=20% Similarity=0.242 Sum_probs=238.7
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+||||||+||++|+.|+++|++|+|+||.+.......+..++++++++|+++|+++.+....... ..+.+ .++..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~-~~~~~-~~g~~ 80 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTP-KALYL-MDGRK 80 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCc-ceEEE-ecCCC
Confidence 57999999999999999999999999999999877777788999999999999999998887644332 22222 22222
Q ss_pred cc--ccCCCcC---CCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCe
Q 009994 135 TR--LSYPLEK---FHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPL 208 (520)
Q Consensus 135 ~~--~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~ 208 (520)
.. ......+ .........++|.+|.+.|.+.+.+.+++++++++ |+++.++++.+. +++...+++ .++.||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~-v~~~~~~~~-~~~~adl 158 (400)
T PRK06475 81 ARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSIT-ATIIRTNSV-ETVSAAY 158 (400)
T ss_pred cceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceE-EEEEeCCCC-cEEecCE
Confidence 11 1111111 00111224689999999999999877789999997 999988766543 444333333 2467999
Q ss_pred EEEecCCcchhhhhhcCCCCCCcccceeeE--EeccCCC--------CCCceEEEecCCCcEEEEecCCCeEEEEEEeCC
Q 009994 209 TIVCDGCFSNLRRSLCKPKVDVPSCFVGLV--LENCQLP--------FANHGHVILADPSPILFYPISSTEVRCLVDVPG 278 (520)
Q Consensus 209 vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~--~~~~~~~--------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 278 (520)
||+|||.+|.+|+.++...... ..+..+. +....++ +.+....|+++++.+..||+.+++..+++.+..
T Consensus 159 vIgADG~~S~vR~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~ 237 (400)
T PRK06475 159 LIACDGVWSMLRAKAGFSKARF-SGHIAWRTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNFVAITG 237 (400)
T ss_pred EEECCCccHhHHhhcCCCCCCc-CCceEEEEEeehhhcchhhhhhcccCCceEEEEcCCCEEEEEEccCCcEEEEEEEEc
Confidence 9999999999999986532221 1122211 1111121 223345677888899999999876554443321
Q ss_pred C--CCCCCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCC-CCCcEEEEccCCCCCCCCCCchhh
Q 009994 279 Q--KVPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQ-PTPGALLMGDAFNMRHPLTGGGMT 355 (520)
Q Consensus 279 ~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~grv~LvGDAAh~~~P~~G~G~n 355 (520)
. ....+.....++.+.+.+ ..+++.+...+. .. .....+|+......+| ..|||+|+|||||+++|+.|||+|
T Consensus 238 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~i~-~~--~~~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n 313 (400)
T PRK06475 238 GENPGEVWSKTGDKAHLKSIY-ADWNKPVLQILA-AI--DEWTYWPLFEMADAQFVGPDRTIFLGDASHAVTPFAAQGAA 313 (400)
T ss_pred CCCCcccCCCCCCHHHHHHHh-cCCChHHHHHHh-cC--CceeECcCcccCCCcceecCCEEEEecccccCCchhhhhHH
Confidence 1 111122222234444443 345555554432 22 2345677776666665 469999999999999999999999
Q ss_pred HHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHHHHHH
Q 009994 356 VALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFD 426 (520)
Q Consensus 356 ~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~ 426 (520)
+||+||..|+++|... .+..+|+.|+++|+|++..++..++.....+... ++ ....|+..+.
T Consensus 314 ~aieDa~~La~~L~~~-------~~~~aL~~Ye~~R~~r~~~~~~~s~~~~~~~~~~-~~-~~~~r~~~~~ 375 (400)
T PRK06475 314 MAIEDAAALAEALDSD-------DQSAGLKRFDSVRKERIAAVAKRGQLNRFAYHAT-GI-FALGRNMLFA 375 (400)
T ss_pred HHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHh
Confidence 9999999999999631 2558999999999999999999887444443332 33 4556776543
No 40
>PRK05868 hypothetical protein; Validated
Probab=100.00 E-value=2.7e-38 Score=322.92 Aligned_cols=350 Identities=17% Similarity=0.134 Sum_probs=231.9
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEE-CCc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFK-DGK 133 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~-~~~ 133 (520)
.||+||||||+|+++|+.|+++|++|+|+||.+.......+..+.++++++|+++|+.+.+.+... ...+..++. ++.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~-~~~~~~~~~~~g~ 80 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKT-RIRGASFVDRDGN 80 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhcc-CccceEEEeCCCC
Confidence 389999999999999999999999999999997766656677789999999999999988866432 334444443 333
Q ss_pred cccccCCCcCC--CCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEE
Q 009994 134 STRLSYPLEKF--HADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTI 210 (520)
Q Consensus 134 ~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV 210 (520)
........... ......+.++|.+|.+.|.+.+. +++++++++ |++++++++. |++...+|++ ++||+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~--~~v~i~~~~~v~~i~~~~~~---v~v~~~dg~~--~~adlvI 153 (372)
T PRK05868 81 ELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQ--PSVEYLFDDSISTLQDDGDS---VRVTFERAAA--REFDLVI 153 (372)
T ss_pred EEeecccccccCCCCCCceEEEEHHHHHHHHHHhcc--CCcEEEeCCEEEEEEecCCe---EEEEECCCCe--EEeCEEE
Confidence 21111110001 11122356889999988876543 379999987 9999876663 5566777775 5599999
Q ss_pred EecCCcchhhhhhcCCCCCCcc--cceeeEEe-ccCCCCCCceEE-EecCCCcEEEEecCCCe-EEEEEEeCCCC--CCC
Q 009994 211 VCDGCFSNLRRSLCKPKVDVPS--CFVGLVLE-NCQLPFANHGHV-ILADPSPILFYPISSTE-VRCLVDVPGQK--VPS 283 (520)
Q Consensus 211 ~AdG~~S~vR~~l~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~-~~~~~~~~~~~--~~~ 283 (520)
+|||.+|.+|+.+..+...... ......+. ...++. +.... +++++..+.+||..++. ...++.+.... .+.
T Consensus 154 gADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (372)
T PRK05868 154 GADGLHSNVRRLVFGPEEQFVKRLGTHAAIFTVPNFLEL-DYWQTWHYGDSTMAGVYSARNNTEARAALAFMDTELRIDY 232 (372)
T ss_pred ECCCCCchHHHHhcCCcccceeecceEEEEEEcCCCCCC-CcceEEEecCCcEEEEEecCCCCceEEEEEEecCCccccc
Confidence 9999999999999654322111 11111211 111222 22333 35666677889988653 33334333211 111
Q ss_pred CCchHHHHHHHHhcCC-CCC-hhhHHHHHHhhhcCCeEEec-CCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHH
Q 009994 284 ISNGEMANYLKAMVAP-QVP-PELHEAFVSAVERGNIRTMP-NRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSD 360 (520)
Q Consensus 284 ~~~~~~~~~l~~~~~~-~~~-~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~D 360 (520)
...+...+.+++.+.. .++ +++.+. +.......++ ....+.++|++|||+|+|||||+++|+.|||+|+||+|
T Consensus 233 ~~~~~~~~~l~~~f~~~~w~~~~l~~~----~~~~~~~~~~~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqGa~~AleD 308 (372)
T PRK05868 233 RDTEAQFAELQRRMAEDGWVRAQLLHY----MRSAPDFYFDEMSQILMDRWSRGRVALVGDAGYCCSPLSGQGTSVALLG 308 (372)
T ss_pred CChHHHHHHHHHHHhhCCCchHHHHhh----cccCCceeeccceEEecCCCCCCCeeeeecccccCCCccCccHHHHHHH
Confidence 1223344555554431 222 333322 2211112233 44455678999999999999999999999999999999
Q ss_pred HHHHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHHH
Q 009994 361 IVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQA 423 (520)
Q Consensus 361 a~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~ 423 (520)
|..|+++|.... .+++++|+.|++.+||+....|.+.......|..+ ++....+|+.
T Consensus 309 a~~La~~L~~~~-----~~~~~al~~ye~~~~~~~~~~q~~~~~~~~~~~p~-~~~~~~~~~~ 365 (372)
T PRK05868 309 AYILAGELKAAG-----DDYQLGFANYHAEFHGFVERNQWLVSDNIPGGAPI-PQEEFERIVH 365 (372)
T ss_pred HHHHHHHHHhcC-----CCHHHHHHHHHHHHhHHHHHhhhhhhccCCcccCC-CHHHHHHhhc
Confidence 999999997531 24788999999999999999998888777777655 4445555544
No 41
>PRK07538 hypothetical protein; Provisional
Probab=100.00 E-value=4.2e-38 Score=326.71 Aligned_cols=335 Identities=22% Similarity=0.263 Sum_probs=224.1
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEEC-Cc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKD-GK 133 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~-~~ 133 (520)
+||+||||||+||++|+.|+++|++|+|+||++.......|..++|+++++|+++|+.+.+..... ....+.++.. |+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~-~~~~~~~~~~~g~ 79 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGI-RTRELAYFNRHGQ 79 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCC-CCcceEEEcCCCC
Confidence 489999999999999999999999999999998766667888899999999999999988876432 2334444432 32
Q ss_pred cccccCCCc-CCCCCccceeecchHHHHHHHHHHHc-CCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCeE
Q 009994 134 STRLSYPLE-KFHADVSGRSFHNGRFIQRMREKAAS-LPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLT 209 (520)
Q Consensus 134 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~v~i~~~~-v~~~~~~~~~v~gv~v~~-~~g~~~~~~ad~v 209 (520)
.. ...+.. ........+.++|..|.+.|.+.+.+ .+.+++++++ |+++.++++.+. +.+.+ .+|+..+++||+|
T Consensus 80 ~~-~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~-~~~~~~~~g~~~~~~adlv 157 (413)
T PRK07538 80 RI-WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV-VFLGDRAGGDLVSVRGDVL 157 (413)
T ss_pred EE-eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE-EEEeccCCCccceEEeeEE
Confidence 21 111110 01111223568999999999999865 4456788887 999987766533 33333 3444556889999
Q ss_pred EEecCCcchhhhhhcCCCCCCcccceeeEEeccCCCC----CCceEEEec-CCCcEEEEecCCC-------eEEEEEEeC
Q 009994 210 IVCDGCFSNLRRSLCKPKVDVPSCFVGLVLENCQLPF----ANHGHVILA-DPSPILFYPISST-------EVRCLVDVP 277 (520)
Q Consensus 210 V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~p~~~~-------~~~~~~~~~ 277 (520)
|+|||.+|.+|+.++.... ...+.++..+....+. ......+.+ +++.+.+||+.++ ...|.+..+
T Consensus 158 IgADG~~S~vR~~l~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~ 235 (413)
T PRK07538 158 IGADGIHSAVRAQLYPDEG--PPRWNGVMMWRGVTEAPPFLTGRSMVMAGHLDGKLVVYPISEPVDADGRQLINWVAEVR 235 (413)
T ss_pred EECCCCCHHHhhhhcCCCC--CCcccceEEEEEeecCccccCCCcEEEEcCCCCEEEEEECCCCcccCCceEEEEEEEEc
Confidence 9999999999999975431 2233343333211111 112233443 3567888998753 455665544
Q ss_pred CCC-----CCCCCc-hHHHHHHHHhcCCCCCh--hhHHHHHHhhhcCCeEEecCCCC-CCCCCCCCcEEEEccCCCCCCC
Q 009994 278 GQK-----VPSISN-GEMANYLKAMVAPQVPP--ELHEAFVSAVERGNIRTMPNRSM-PADPQPTPGALLMGDAFNMRHP 348 (520)
Q Consensus 278 ~~~-----~~~~~~-~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~grv~LvGDAAh~~~P 348 (520)
.+. ...+.. ...++++ +.+....++ .+.+.+ .. ...+..+|+... +.++|..|||+|+|||||.++|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i-~~--~~~~~~~p~~~~~~~~~w~~grv~LvGDAAH~~~P 311 (413)
T PRK07538 236 VDDAGAPRREDWNRPGDLEDFL-PHFADWRFDWLDVPALI-RA--AEAIYEYPMVDRDPLPRWTRGRVTLLGDAAHPMYP 311 (413)
T ss_pred CCccCCCcccccCCccCHHHHH-HHhcCCCCCcccHHHHH-hc--CcceeeccccccCCCCcccCCcEEEEeeccCcCCC
Confidence 221 111112 2223332 222221111 122222 11 234556666543 4668999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 009994 349 LTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGA 404 (520)
Q Consensus 349 ~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~ 404 (520)
++|||+|+||+||..|+++|.... ..+.+|+.|+++|++++..++..++.
T Consensus 312 ~~GqG~~~Ai~Da~~La~~L~~~~------~~~~aL~~Ye~~R~~~~~~~~~~s~~ 361 (413)
T PRK07538 312 VGSNGASQAILDARALADALAAHG------DPEAALAAYEAERRPATAQIVLANRL 361 (413)
T ss_pred CCcccHHHHHHHHHHHHHHHHhcC------CHHHHHHHHHHHhhHHHHHHHHHhhh
Confidence 999999999999999999998631 26789999999999999998887765
No 42
>PRK08163 salicylate hydroxylase; Provisional
Probab=100.00 E-value=6.3e-38 Score=324.07 Aligned_cols=353 Identities=18% Similarity=0.257 Sum_probs=237.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEEC-
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKD- 131 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~- 131 (520)
++.||+||||||+||++|+.|+++|++|+|+||++.......+..++++++++|+++|+.+.+..... ....+.++..
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~-~~~~~~~~~~~ 81 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAV-FTDHLTMMDAV 81 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhcc-CCcceEEEeCC
Confidence 45799999999999999999999999999999998776677888999999999999999988766432 2334444432
Q ss_pred -CccccccCCCcC-C--CCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEec
Q 009994 132 -GKSTRLSYPLEK-F--HADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYA 206 (520)
Q Consensus 132 -~~~~~~~~~~~~-~--~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~a 206 (520)
++.. ...+... . ........++|..+.+.|.+.+.+.+++++++++ ++++.++++. +++...+|++ +.|
T Consensus 82 ~~~~~-~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~v~~~~g~~--~~a 155 (396)
T PRK08163 82 DAEEV-VRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG---VTVFDQQGNR--WTG 155 (396)
T ss_pred CCCEE-EEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc---eEEEEcCCCE--Eec
Confidence 2221 1111111 0 0111234689999999999999887779999886 9999877664 5566667764 569
Q ss_pred CeEEEecCCcchhhhhhcCCCCCCcccceee--EEeccCCCC---CCceEEEecCCCcEEEEecCCCe-EEEEEEeCCCC
Q 009994 207 PLTIVCDGCFSNLRRSLCKPKVDVPSCFVGL--VLENCQLPF---ANHGHVILADPSPILFYPISSTE-VRCLVDVPGQK 280 (520)
Q Consensus 207 d~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~ 280 (520)
|+||+|||.+|.+|+.+...... ......+ .+....++. ......+.++++.++.+|+.++. ..+++.++.+.
T Consensus 156 d~vV~AdG~~S~~r~~~~g~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~ 234 (396)
T PRK08163 156 DALIGCDGVKSVVRQSLVGDAPR-VTGHVVYRAVIDVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNLVVTFHSRE 234 (396)
T ss_pred CEEEECCCcChHHHhhccCCCCC-ccccEEEEEEEeHHHCcchhccCccEEEEcCCceEEEEEecCCeEEEEEEEECCCC
Confidence 99999999999999998432111 1111111 111112221 12234556677788899998765 33444443221
Q ss_pred CCCC--CchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCC-CCCCCCCCCCcEEEEccCCCCCCCCCCchhhHH
Q 009994 281 VPSI--SNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNR-SMPADPQPTPGALLMGDAFNMRHPLTGGGMTVA 357 (520)
Q Consensus 281 ~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~a 357 (520)
.... .... .+.+.+.+.. +.+.+...+.. . ..+..+... ..+..+|..|||+|+|||||.++|++|||+|+|
T Consensus 235 ~~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~a 309 (396)
T PRK08163 235 QEEWGVKDGS-KEEVLSYFEG-IHPRPRQMLDK-P--TSWKRWATADREPVAKWSTGRVTLLGDAAHPMTQYMAQGACMA 309 (396)
T ss_pred CcccccCCCC-HHHHHHHHcC-CChHHHHHHhc-C--CceeEccccCCCcccccccCcEEEEecccccCCcchhccHHHH
Confidence 1111 1112 2233333333 33343332211 1 122222222 234567889999999999999999999999999
Q ss_pred HHHHHHHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHHHHH
Q 009994 358 LSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACF 425 (520)
Q Consensus 358 l~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~ 425 (520)
|+||.+|++.|... ..+++.+|+.|+++|++++..++..++.+.+++... + ....+|+...
T Consensus 310 i~Da~~La~~L~~~-----~~~~~~al~~y~~~R~~r~~~~~~~s~~~~~~~~~~-~-~~~~~r~~~~ 370 (396)
T PRK08163 310 LEDAVTLGKALEGC-----DGDAEAAFALYESVRIPRTARVVLSAREMGRIYHAK-G-VERQVRNLLW 370 (396)
T ss_pred HHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhCCC-C-HHHHHHHHHh
Confidence 99999999999742 234688999999999999999999999999988754 2 3455566543
No 43
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=100.00 E-value=2.6e-37 Score=321.00 Aligned_cols=342 Identities=19% Similarity=0.218 Sum_probs=226.2
Q ss_pred CcEEEECCCHHHHHHHHHHhhCC-CeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccce---eceEE-EE
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDG-RRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQ---VLGYA-LF 129 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G-~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~---~~~~~-~~ 129 (520)
.+|+||||||+||++|+.|+++| ++|+|+||++.......|..++++++++|+++|+.+.+....... ..... .+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 80 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW 80 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEE
Confidence 37999999999999999999998 699999999877666778889999999999999988776644211 11111 11
Q ss_pred ECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCe
Q 009994 130 KDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPL 208 (520)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~ 208 (520)
.++...... . ...........++|..|.+.|.+.+. +..+++++ |+++.+++++ +++...+|++ +.||+
T Consensus 81 ~~~~~~~~~-~-~~~~~~~~~~~i~R~~l~~~L~~~~~---~~~v~~~~~v~~i~~~~~~---~~v~~~~g~~--~~ad~ 150 (414)
T TIGR03219 81 RNGSDASYL-G-ATIAPGVGQSSVHRADFLDALLKHLP---EGIASFGKRATQIEEQAEE---VQVLFTDGTE--YRCDL 150 (414)
T ss_pred EecCcccee-e-eeccccCCcccCCHHHHHHHHHHhCC---CceEEcCCEEEEEEecCCc---EEEEEcCCCE--EEeeE
Confidence 122211100 0 00011111235889999999988764 34566776 9999887664 5566677764 56999
Q ss_pred EEEecCCcchhhhhhcCC--CCCCcccceeeEEecc-----CC---------CC--CCceEEEecCCCcEEEEecCCCeE
Q 009994 209 TIVCDGCFSNLRRSLCKP--KVDVPSCFVGLVLENC-----QL---------PF--ANHGHVILADPSPILFYPISSTEV 270 (520)
Q Consensus 209 vV~AdG~~S~vR~~l~~~--~~~~~~~~~~~~~~~~-----~~---------~~--~~~~~~~~~~~~~~~~~p~~~~~~ 270 (520)
||+|||.+|.+|+.+... .......+.++..... .+ +. .+....++++++.+++||+.+++.
T Consensus 151 vVgADG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~ 230 (414)
T TIGR03219 151 LIGADGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQGRL 230 (414)
T ss_pred EEECCCccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccccccccccccceEEEcCCCeEEEEECCCCcE
Confidence 999999999999998531 1111122222222111 11 00 112346778888888999988764
Q ss_pred EEE-EEeCCC--CC------CCCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCC-CCCCCCCCcEEEEc
Q 009994 271 RCL-VDVPGQ--KV------PSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSM-PADPQPTPGALLMG 340 (520)
Q Consensus 271 ~~~-~~~~~~--~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~grv~LvG 340 (520)
.+. +..... .. ..+..+...+.+.+.+ ..+++.+.+.+ +..+.. ..++.... +..+|.+|||+|+|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~~~~-~~~~~~--~~~~~~~~~~~~~w~~grv~LiG 306 (414)
T TIGR03219 231 INVVAFISDRSQPKPTWPSDTPWVREATQREMLDAF-AGWGDAARALL-ECIPAP--TLWALHDLAELPGYVHGRVALIG 306 (414)
T ss_pred EEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHh-cCCCHHHHHHH-HhCCCC--CceeeeecccccceeeCcEEEEE
Confidence 333 222211 00 1111222233344433 34556555433 333222 22333222 45678899999999
Q ss_pred cCCCCCCCCCCchhhHHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCC
Q 009994 341 DAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSS 412 (520)
Q Consensus 341 DAAh~~~P~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~ 412 (520)
||||.|+|+.|||+|+||+||..|+++|.... ..+.+++.+|+.|+++|+|++..++..++.+.+++...
T Consensus 307 DAAH~m~P~~GqGa~~AieDA~~La~~L~~~~--~~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~ 376 (414)
T TIGR03219 307 DAAHAMLPHQGAGAGQGLEDAYFLARLLGDTE--LEAGDLPALLEAYDDVRRPRACRVQRTSREAGELYELR 376 (414)
T ss_pred cccCCCCCCcCcchHhHHHHHHHHHHHHHhhc--cCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999997532 13456889999999999999999999999998888765
No 44
>PRK07236 hypothetical protein; Provisional
Probab=100.00 E-value=1e-36 Score=313.67 Aligned_cols=332 Identities=20% Similarity=0.227 Sum_probs=218.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCC-CceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEE
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP-DRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFK 130 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~-~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 130 (520)
++..+|+||||||+||++|+.|+++|++|+|+||.+... ....|..++++++++|+++|+.+.. .... ......++.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~-~~~~-~~~~~~~~~ 81 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPA-DIGV-PSRERIYLD 81 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccc-cccc-CccceEEEe
Confidence 446899999999999999999999999999999986432 3455677999999999999998654 2221 222233333
Q ss_pred C-CccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCe
Q 009994 131 D-GKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPL 208 (520)
Q Consensus 131 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~ 208 (520)
. ++.. ...+. ....+.+..+.+.|.+.+ +++++++++ |++++++++. |++...+|++ ++||+
T Consensus 82 ~~g~~~-~~~~~-------~~~~~~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~---v~v~~~~g~~--~~ad~ 145 (386)
T PRK07236 82 RDGRVV-QRRPM-------PQTQTSWNVLYRALRAAF---PAERYHLGETLVGFEQDGDR---VTARFADGRR--ETADL 145 (386)
T ss_pred CCCCEe-eccCC-------CccccCHHHHHHHHHHhC---CCcEEEcCCEEEEEEecCCe---EEEEECCCCE--EEeCE
Confidence 2 2211 11110 011245667778777654 567888887 9999887764 5566677764 56999
Q ss_pred EEEecCCcchhhhhhcCCCCCCcccceeeEEe-----ccCCCCC------CceEEEecCCCcEEEEecCCC---------
Q 009994 209 TIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-----NCQLPFA------NHGHVILADPSPILFYPISST--------- 268 (520)
Q Consensus 209 vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-----~~~~~~~------~~~~~~~~~~~~~~~~p~~~~--------- 268 (520)
||+|||.+|.+|+.+..... ..+.++..+ ...++.. .....+.++++.++.||+.+.
T Consensus 146 vIgADG~~S~vR~~l~~~~~---~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (386)
T PRK07236 146 LVGADGGRSTVRAQLLPDVR---PTYAGYVAWRGLVDEAALPPEARAALRDRFTFQLGPGSHILGYPVPGEDGSTEPGKR 222 (386)
T ss_pred EEECCCCCchHHHHhCCCCC---CCcCCeEEEEEecchHHcCchhhhhcccceEEEEcCCceEEEEECCCCCCCcCCCCc
Confidence 99999999999999843222 122222221 1122211 123345566677888887532
Q ss_pred eEEEEEEeCCCC---CC-----------------CCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCC
Q 009994 269 EVRCLVDVPGQK---VP-----------------SISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPA 328 (520)
Q Consensus 269 ~~~~~~~~~~~~---~~-----------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 328 (520)
...|.+..+.+. .. ....++..+.+.+.....+++.+...+... + ....++......
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~ 299 (386)
T PRK07236 223 RYNWVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPVFAELVEAT-A--QPFVQAIFDLEV 299 (386)
T ss_pred EEEEEEEecCCCccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHHHHHHHhhC-c--CchhhhhhcccC
Confidence 234555443221 00 001223334444433333555554433221 1 122234444556
Q ss_pred CCCCCCcEEEEccCCCCCCCCCCchhhHHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhh
Q 009994 329 DPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKV 408 (520)
Q Consensus 329 ~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~ 408 (520)
..|..|||+|+|||||.++|+.|||+|+||+||..|+++|.... ...+.+|+.|+++|+|++..++..++.+..+
T Consensus 300 ~~~~~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~-----~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~ 374 (386)
T PRK07236 300 PRMAFGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAA-----GDIDAALAAWEAERLAVGAAIVARGRRLGAR 374 (386)
T ss_pred cccccCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcc-----cchHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999997542 2267899999999999999999999887776
Q ss_pred hcCC
Q 009994 409 FSSS 412 (520)
Q Consensus 409 ~~~~ 412 (520)
++..
T Consensus 375 ~~~~ 378 (386)
T PRK07236 375 LQAQ 378 (386)
T ss_pred HHhc
Confidence 6543
No 45
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=100.00 E-value=7.8e-36 Score=317.00 Aligned_cols=348 Identities=16% Similarity=0.130 Sum_probs=224.3
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCC-Cc---eeeeeeccchHHHHHhcCch--hHHhhcccceec
Q 009994 51 NGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP-DR---IVGELLQPGGYLKLVELGLE--DCVEEIDAQQVL 124 (520)
Q Consensus 51 ~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~-~~---~~g~~l~~~~~~~l~~lGl~--~~l~~~~~~~~~ 124 (520)
..+.++|+||||||+||++|+.|+++|++|+|+||++... .. ..+..++++++++|+++|++ +.+.+.......
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~ 157 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGD 157 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccc
Confidence 3667999999999999999999999999999999986321 11 13577999999999999963 555443322111
Q ss_pred eEE-EEE--CCccccccCCCc---CCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeC
Q 009994 125 GYA-LFK--DGKSTRLSYPLE---KFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTK 197 (520)
Q Consensus 125 ~~~-~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~ 197 (520)
... +.. .|.. ...++.. .....+.++.++|..|++.|.+.+. ...+++++ |+++.++++. |++...
T Consensus 158 ~i~~~~d~~~G~~-~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg---~~~i~~g~~V~~I~~~~d~---VtV~~~ 230 (668)
T PLN02927 158 RINGLVDGISGSW-YVKFDTFTPAASRGLPVTRVISRMTLQQILARAVG---EDVIRNESNVVDFEDSGDK---VTVVLE 230 (668)
T ss_pred eeeeeeecCCCce-EeeccccccccccCCCeEEEEeHHHHHHHHHhhCC---CCEEEcCCEEEEEEEeCCE---EEEEEC
Confidence 111 111 1211 1111110 0011234568999999999987653 22456665 9999887774 556667
Q ss_pred CCcEEEEecCeEEEecCCcchhhhhhcCCCCCCcccceeeEEeccCCCC--CCc-eEEEecCCCcEEEEecCCCeEEEEE
Q 009994 198 DGQELRAYAPLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLENCQLPF--ANH-GHVILADPSPILFYPISSTEVRCLV 274 (520)
Q Consensus 198 ~g~~~~~~ad~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~p~~~~~~~~~~ 274 (520)
+|++ +.+|+||+|||++|.+|+.+..........+.++.......+. ... ...+.+.+..+..++.++++..|+.
T Consensus 231 dG~t--i~aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~ 308 (668)
T PLN02927 231 NGQR--YEGDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYA 308 (668)
T ss_pred CCCE--EEcCEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCcccccccceEEEEcCCeEEEEEcCCCCeEEEEE
Confidence 7764 5699999999999999999964332222222222111111111 111 2344566667777788777766655
Q ss_pred EeCCCCCCCCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCC-CCCCCCCCcEEEEccCCCCCCCCCCch
Q 009994 275 DVPGQKVPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSM-PADPQPTPGALLMGDAFNMRHPLTGGG 353 (520)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~grv~LvGDAAh~~~P~~G~G 353 (520)
..+.........+..++.+++.+. .+++.+.+.+ +..+...+..++.+.. +..+|.+|||+|+|||||.++|+.|||
T Consensus 309 f~~~p~~~~~~~~~~~e~L~~~f~-~w~~~v~elI-~~t~~~~i~~~~iyd~~p~~~W~~grVvLiGDAAH~~~P~~GqG 386 (668)
T PLN02927 309 FHEEPAGGADAPNGMKKRLFEIFD-GWCDNVLDLL-HATEEDAILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQPNMGQG 386 (668)
T ss_pred EEECCccccccchhHHHHHHHHhc-cCCHHHHHHH-HhCccccceeeeEEeccCCCccccCcEEEEcCccCCCCCccccc
Confidence 433111111123445566665443 4566665543 3333333444444443 335799999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCccCC----CCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhh
Q 009994 354 MTVALSDIVVLRNLLKPLHD----FNDAASLGRYLESFYTLRKPVASTINTLAGALYKVF 409 (520)
Q Consensus 354 ~n~al~Da~~La~~L~~~~~----~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~ 409 (520)
+|+||+||..|+++|..+.. .+.+..++.+|+.|+++|++++..++..++....++
T Consensus 387 ~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~rv~~i~~~ar~a~~~~ 446 (668)
T PLN02927 387 GCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLRVAIIHAMARMAAIMA 446 (668)
T ss_pred hHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999976421 112345789999999999999999988876544443
No 46
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=7e-34 Score=276.76 Aligned_cols=306 Identities=19% Similarity=0.233 Sum_probs=182.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEE-CC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFK-DG 132 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~-~~ 132 (520)
+.+|+|||||++||++|++|+|.|++|+|+|++..+...+.+..+.-++.++|+.+|+.+.+..+.........+.. +|
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e~i~~~gip~~~~v~~~~~sg 81 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKEQIREQGIPLGGRVLIHGDSG 81 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHcccHHHHHHhcCcccceeeeecCCC
Confidence 35899999999999999999999999999999876666666677778899999999999888876554333322222 23
Q ss_pred c-cccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-----EEEEEeeCCeEEEEEEEeCCCcEEEEec
Q 009994 133 K-STRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-----VTSLLEENGTIKGVQYKTKDGQELRAYA 206 (520)
Q Consensus 133 ~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-----v~~~~~~~~~v~gv~v~~~~g~~~~~~a 206 (520)
+ ...+.++.. ...-..|.|..+.+.+...+...+++.+.... ...++.... ...+++.+|.+ +++
T Consensus 82 ~~~~~~~~~~~----~~~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~---~~~v~l~~g~~--~~~ 152 (420)
T KOG2614|consen 82 KEVSRILYGEP----DEYILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETLGK---KLVVHLSDGTT--VKG 152 (420)
T ss_pred CeeEecccCCc----hHHHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeeccc---ccceecCCCcE--EEe
Confidence 3 223333311 11123455555655555555555556555422 222221111 24456677764 569
Q ss_pred CeEEEecCCcchhhhhhcCCCCCCc--ccceeeEEeccCCCCCCceEEEecCCCcEEEEecCCCeEEEEEEeCC----CC
Q 009994 207 PLTIVCDGCFSNLRRSLCKPKVDVP--SCFVGLVLENCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPG----QK 280 (520)
Q Consensus 207 d~vV~AdG~~S~vR~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----~~ 280 (520)
|++|||||++|.||+.|+...+... ..+.++.+.....+.. ..++...+..+...|.+.....+++.... ..
T Consensus 153 dlligCDGa~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~~--~~vf~~~~~~~~~~~~~~~~~~~y~~~~k~~t~t~ 230 (420)
T KOG2614|consen 153 DLLIGCDGAYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPFG--KKVFAIYGNGLHSWPRPGFHLIAYWFLDKSLTSTD 230 (420)
T ss_pred eEEEEcCchHHHHHHHhcccCCcceeEEEEeeeeeccCCCCcc--cceecccCCeEEEcccCCceEEEEEeecCCccccc
Confidence 9999999999999999987543332 3455555443333332 22333333333333333333333332210 00
Q ss_pred CC-CCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCC-----CCCCCcEEEEccCCCCCCCCCCchh
Q 009994 281 VP-SISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPAD-----PQPTPGALLMGDAFNMRHPLTGGGM 354 (520)
Q Consensus 281 ~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~grv~LvGDAAh~~~P~~G~G~ 354 (520)
.+ ...++.++....+. ...+++.+.+.+ +.+....+...+...+++. ...+++|+|+|||||+|.|+.|||+
T Consensus 231 ~~~~~e~~~l~~~~~~v-~~~~~en~~d~i-~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaHaM~Pf~GQG~ 308 (420)
T KOG2614|consen 231 FAPFDEPEKLKKTSLEV-VDFFPENFPDII-ELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAMTPFLGQGG 308 (420)
T ss_pred ccCcCCHHHHhhhHHHH-HHHhHHhHHHHH-HhcChHHhhhchhhhcCCcCeeeeccCCCeEEEecccccccCCcccccc
Confidence 11 11223333322222 123444443322 3333334444434443333 2345689999999999999999999
Q ss_pred hHHHHHHHHHHHhcCccC
Q 009994 355 TVALSDIVVLRNLLKPLH 372 (520)
Q Consensus 355 n~al~Da~~La~~L~~~~ 372 (520)
|+|++|+..|+++|.++.
T Consensus 309 n~a~ED~~VLa~~L~~~~ 326 (420)
T KOG2614|consen 309 NCAFEDCVVLAECLDEAI 326 (420)
T ss_pred cchHHHHHHHHHHHHHhc
Confidence 999999999999998763
No 47
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=100.00 E-value=2.7e-31 Score=275.94 Aligned_cols=342 Identities=15% Similarity=0.139 Sum_probs=211.8
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEE
Q 009994 50 KNGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALF 129 (520)
Q Consensus 50 ~~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~ 129 (520)
+...++||+||||||||+++|+.|+++|++|+|+||+. .....+|..++. +.++++|+.+.+... ...+..+.
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~-~~~k~cgg~i~~---~~l~~lgl~~~~~~~---~i~~~~~~ 107 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL-DNAKPCGGAIPL---CMVGEFDLPLDIIDR---KVTKMKMI 107 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC-CCCCCccccccH---hHHhhhcCcHHHHHH---HhhhheEe
Confidence 44677999999999999999999999999999999985 344668887764 566778887655431 22333333
Q ss_pred ECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeC--CeEEEEEEEeC-----CCcEE
Q 009994 130 KDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEEN--GTIKGVQYKTK-----DGQEL 202 (520)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~--~~v~gv~v~~~-----~g~~~ 202 (520)
..+.. ...++.. .........++|..|++.|++.+.+. |++++.++++++..+. +....|++... +|+..
T Consensus 108 ~p~~~-~v~~~~~-~~~~~~~~~v~R~~~d~~L~~~A~~~-Ga~~~~~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~ 184 (450)
T PLN00093 108 SPSNV-AVDIGKT-LKPHEYIGMVRREVLDSFLRERAQSN-GATLINGLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPK 184 (450)
T ss_pred cCCce-EEEeccc-CCCCCeEEEecHHHHHHHHHHHHHHC-CCEEEeceEEEEEeccCCCCcEEEEEEeccccccCCCcc
Confidence 22111 1222210 11112223589999999999999887 7999888887776422 22223554432 14445
Q ss_pred EEecCeEEEecCCcchhhhhhcCCCCCCcccceeeEEeccCCC------CCCceEEEec----CCCcEEEEecCCCeEEE
Q 009994 203 RAYAPLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLENCQLP------FANHGHVILA----DPSPILFYPISSTEVRC 272 (520)
Q Consensus 203 ~~~ad~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~----~~~~~~~~p~~~~~~~~ 272 (520)
+++||+||+|||.+|.+|+.++..... ...++... ...+ .++...++++ ++++.|+||.++. ..+
T Consensus 185 ~v~a~~VIgADG~~S~vrr~lg~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~WifP~g~~-~~V 259 (450)
T PLN00093 185 TLEVDAVIGADGANSRVAKDIDAGDYD---YAIAFQER-IKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVFPKCDH-VAV 259 (450)
T ss_pred EEEeCEEEEcCCcchHHHHHhCCCCcc---eeEEEEEE-EeCChhhccccCCeEEEEeCCCCCCCceEEEEECCCc-EEE
Confidence 688999999999999999999875321 11222211 1122 1223455555 3457799999854 444
Q ss_pred EEEeCCCCCCCCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCc
Q 009994 273 LVDVPGQKVPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGG 352 (520)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~ 352 (520)
.+..... .....+..+.+++.....+. ..+..++...+....+..++..+|++|+|||||.++|++|+
T Consensus 260 G~g~~~~---~~~~~~~~~~l~~~~~~~l~---------~~~~~~~~~~~ip~~~~~~~~~~~vlLvGDAAg~v~P~tGe 327 (450)
T PLN00093 260 GTGTVVN---KPAIKKYQRATRNRAKDKIA---------GGKIIRVEAHPIPEHPRPRRVRGRVALVGDAAGYVTKCSGE 327 (450)
T ss_pred EEEEccC---CCChHHHHHHHHHHhhhhcC---------CCeEEEEEEEEcccccccceeCCCcEEEeccccCCCccccc
Confidence 4432111 11122233333321110000 00001122222222345567789999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHH
Q 009994 353 GMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKE 419 (520)
Q Consensus 353 G~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 419 (520)
|++.||.++..+|+.+.+....++.......|+.|++..+.........+..+.++|..+ ++..+.
T Consensus 328 GI~~Am~sg~~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~~~g~~~~~~~~l~~~~~~~-~~~~~~ 393 (450)
T PLN00093 328 GIYFAAKSGRMCAEAIVEGSENGTRMVDEADLREYLRKWDKKYWPTYKVLDILQKVFYRS-NPAREA 393 (450)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHHH
Confidence 999999999999999976432111111235689999987776767777777777877663 443333
No 48
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=100.00 E-value=3.3e-30 Score=265.31 Aligned_cols=324 Identities=18% Similarity=0.231 Sum_probs=206.6
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECC-c
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDG-K 133 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~-~ 133 (520)
|||+||||||||+++|+.|++.|++|+|+||+. .....+|..+++ +.++++|+.+.+... ...+..++... .
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~-~~~~~cg~~i~~---~~l~~l~i~~~~~~~---~~~~~~~~~~~~~ 73 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERAL-SNIKPCGGAIPP---CLIEEFDIPDSLIDR---RVTQMRMISPSRV 73 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCC-CCcCcCcCCcCH---hhhhhcCCchHHHhh---hcceeEEEcCCCc
Confidence 699999999999999999999999999999983 333567877776 456778887655432 33444554432 2
Q ss_pred cccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEe----CCCcEEEEecCeE
Q 009994 134 STRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKT----KDGQELRAYAPLT 209 (520)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~gv~v~~----~~g~~~~~~ad~v 209 (520)
......+. .......++|..|++.|.+.+.+. |++++.++|+++.++++.+. |++.+ .+|+..+++||+|
T Consensus 74 ~~~~~~~~----~~~~~~~~~r~~fd~~L~~~a~~~-G~~v~~~~v~~v~~~~~~~~-v~~~~~~~~~~~~~~~i~a~~V 147 (388)
T TIGR02023 74 PIKVTIPS----EDGYVGMVRREVFDSYLRERAQKA-GAELIHGLFLKLERDRDGVT-LTYRTPKKGAGGEKGSVEADVV 147 (388)
T ss_pred eeeeccCC----CCCceEeeeHHHHHHHHHHHHHhC-CCEEEeeEEEEEEEcCCeEE-EEEEeccccCCCcceEEEeCEE
Confidence 21111110 011112589999999999999887 78998878989887776543 55543 2344456889999
Q ss_pred EEecCCcchhhhhhcCCCCCCcccceeeE--Eecc--CC-CCCCceEEEec----CCCcEEEEecCCCeEEEEEEeCCCC
Q 009994 210 IVCDGCFSNLRRSLCKPKVDVPSCFVGLV--LENC--QL-PFANHGHVILA----DPSPILFYPISSTEVRCLVDVPGQK 280 (520)
Q Consensus 210 V~AdG~~S~vR~~l~~~~~~~~~~~~~~~--~~~~--~~-~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~ 280 (520)
|+|||.+|.+|+.++.+.... ...++. +... .. ..++...++++ ++++.|++|.++. ..+......
T Consensus 148 I~AdG~~S~v~r~lg~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~~-~~vg~~~~~-- 222 (388)
T TIGR02023 148 IGADGANSPVAKELGLPKNLP--RVIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGDH-IAVGTGTGT-- 222 (388)
T ss_pred EECCCCCcHHHHHcCCCCCCc--EEEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCCe-eEEeEEECC--
Confidence 999999999999998753211 111221 1101 01 11233444543 3457799999753 444432211
Q ss_pred CCCCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHH
Q 009994 281 VPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSD 360 (520)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~D 360 (520)
.....++..+.+.+... +... + ... ......|. .+..+|..+|++++|||||.++|++|+|++.||.+
T Consensus 223 -~~~~~~~~~~~l~~~~~--~~~~--~----~~~-~~~~~ip~--~~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~~s 290 (388)
T TIGR02023 223 -HGFDAKQLQANLRRRAG--LDGG--Q----TIR-REAAPIPM--KPRPRWDFGRAMLVGDAAGLVTPASGEGIYFAMKS 290 (388)
T ss_pred -CCCCHHHHHHHHHHhhC--CCCc--e----Eee-eeeEeccc--cccccccCCCEEEEeccccCcCCcccccHHHHHHH
Confidence 11223344444443221 1100 0 000 01112233 34456778999999999999999999999999999
Q ss_pred HHHHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCC
Q 009994 361 IVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSS 412 (520)
Q Consensus 361 a~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~ 412 (520)
+..+|+.+.+..+.++ ...|+.|+++.+..........+.+..++..+
T Consensus 291 g~~aa~~i~~~l~~~~----~~~L~~Y~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (388)
T TIGR02023 291 GQMAAQAIAEYLQNGD----ATDLRHYERKFMKLYGTTFRVLRVLQMVYYRS 338 (388)
T ss_pred HHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999987542211 35799999988877655556666666666444
No 49
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.98 E-value=3.8e-30 Score=264.93 Aligned_cols=340 Identities=15% Similarity=0.161 Sum_probs=207.1
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
+||+||||||||+++|+.|+++|++|+|+||+.. ....++..++. +.|+++|+.+.+... ...+..++..+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~-~~~~cg~~i~~---~~l~~~g~~~~~~~~---~i~~~~~~~p~~- 72 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD-NAKPCGGAIPL---CMVDEFALPRDIIDR---RVTKMKMISPSN- 72 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC-CCCCccccccH---hhHhhccCchhHHHh---hhceeEEecCCc-
Confidence 5899999999999999999999999999999853 34567777754 567788887554331 223333332221
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEe--eCCeEEEEEEEeCC-----CcEEEEecC
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLE--ENGTIKGVQYKTKD-----GQELRAYAP 207 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~--~~~~v~gv~v~~~~-----g~~~~~~ad 207 (520)
....+... .........++|..|++.|.+.+.+. |++++.++++++.. +.+...+|++...+ |+..+++|+
T Consensus 73 ~~~~~~~~-~~~~~~~~~v~R~~~d~~L~~~a~~~-G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~ 150 (398)
T TIGR02028 73 IAVDIGRT-LKEHEYIGMLRREVLDSFLRRRAADA-GATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVD 150 (398)
T ss_pred eEEEeccC-CCCCCceeeeeHHHHHHHHHHHHHHC-CcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeC
Confidence 11111110 01111223589999999999999887 89999888777653 22333446554333 555578899
Q ss_pred eEEEecCCcchhhhhhcCCCCCCcccceeeEEeccCCC------CCCceEEEec----CCCcEEEEecCCCeEEEEEEeC
Q 009994 208 LTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLENCQLP------FANHGHVILA----DPSPILFYPISSTEVRCLVDVP 277 (520)
Q Consensus 208 ~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~ 277 (520)
+||+|||.+|.+|+.++.+... ....+... ...+ .+....++++ ++++.|+||.++. ..+.+...
T Consensus 151 ~VIgADG~~S~v~~~~g~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~~-~~VG~g~~ 225 (398)
T TIGR02028 151 AVIGADGANSRVAKEIDAGDYS---YAIAFQER-IRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCDH-VAVGTGTV 225 (398)
T ss_pred EEEECCCcchHHHHHhCCCCcc---eEEEEEEE-eeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCCe-EEEEEEeC
Confidence 9999999999999999865321 11112111 1122 1233455555 3457899999853 44444321
Q ss_pred CCCCCCCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHH
Q 009994 278 GQKVPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVA 357 (520)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~a 357 (520)
. .....+.+.+.+... .+..+. ..+...+...+.......++..+|++|+|||||+++|++|+|++.|
T Consensus 226 ~---~~~~~~~~~~~l~~~----~~~~~~-----~~~~~~~~~~~ip~~~~~~~~~~~~llvGDAAg~v~P~tGeGI~~A 293 (398)
T TIGR02028 226 A---AKPEIKRLQSGIRAR----AAGKVA-----GGRIIRVEAHPIPEHPRPRRVVGRVALVGDAAGYVTKCSGEGIYFA 293 (398)
T ss_pred C---CCccHHHHHHhhhhh----hhhccC-----CCcEEEEEEEeccccccccEECCCEEEEEcCCCCCCcccccchHHH
Confidence 1 111112222222211 000000 0000111222222223456778999999999999999999999999
Q ss_pred HHHHHHHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCCChhHHHHHHH
Q 009994 358 LSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQ 422 (520)
Q Consensus 358 l~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~ 422 (520)
|.++..+|+.+.+....++.......|+.|++..+.........+..+.++|.. ++.....+.+
T Consensus 294 ~~sg~~aa~~i~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 357 (398)
T TIGR02028 294 AKSGRMCAEAIVEESRLGGAVTEEGDLAGYLRRWDKEYRPTYRVLDLLQRVFYR-SNAGREAFVE 357 (398)
T ss_pred HHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHH
Confidence 999999999997643221111224578899987776666666677777777766 3443333333
No 50
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.97 E-value=1.8e-29 Score=250.02 Aligned_cols=284 Identities=24% Similarity=0.281 Sum_probs=182.4
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEE-CCc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFK-DGK 133 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~-~~~ 133 (520)
+||+||||||+|+++|+.|++.|++|+|+||+.......++..+.+.+.+.+...+.. ... ......++. +++
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~-----~~~~~~~~~~~~~ 74 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLEL-IVN-----LVRGARFFSPNGD 74 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchh-hhh-----heeeEEEEcCCCc
Confidence 6999999999999999999999999999999976666667888888888777665431 111 112222222 222
Q ss_pred cccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEe
Q 009994 134 STRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVC 212 (520)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~A 212 (520)
.. ..+. ....++.++|..+.+.|.+.+.+. ++++++++ ++++..+++.+. +.+ .++. .+++||+||+|
T Consensus 75 ~~--~~~~----~~~~~~~i~r~~l~~~l~~~~~~~-gv~~~~~~~v~~~~~~~~~~~-~~~--~~~~-~~~~a~~vv~a 143 (295)
T TIGR02032 75 SV--EIPI----ETELAYVIDRDAFDEQLAERAQEA-GAELRLGTTVLDVEIHDDRVV-VIV--RGGE-GTVTAKIVIGA 143 (295)
T ss_pred EE--Eecc----CCCcEEEEEHHHHHHHHHHHHHHc-CCEEEeCcEEeeEEEeCCEEE-EEE--cCcc-EEEEeCEEEEC
Confidence 21 1111 123456789999999999999886 79998886 889887777532 333 3222 35779999999
Q ss_pred cCCcchhhhhhcCCCCCCcccceeeEEe-ccC-C-CCCCceEEEec----CCCcEEEEecCCCeEEEEEEeCCCCCCCCC
Q 009994 213 DGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQ-L-PFANHGHVILA----DPSPILFYPISSTEVRCLVDVPGQKVPSIS 285 (520)
Q Consensus 213 dG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~-~-~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 285 (520)
||.+|.+|+.++....... ...++... ... . ..++...++++ ++++.|++|.++++..+.+...... .
T Consensus 144 ~G~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~----~ 218 (295)
T TIGR02032 144 DGSRSIVAKKLGLRKEPRE-LGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSAE----E 218 (295)
T ss_pred CCcchHHHHhcCCCCCCcc-eeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccCC----C
Confidence 9999999998876542211 11222111 111 1 12233344443 3567899999998766665544222 1
Q ss_pred chHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeE--EecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHHHH
Q 009994 286 NGEMANYLKAMVAPQVPPELHEAFVSAVERGNIR--TMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVV 363 (520)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da~~ 363 (520)
..+.++.+.+.+. ..|. +.. .+..+.. ..+. .....++..+||+++|||||.++|++|||||+||+||..
T Consensus 219 ~~~~~~~~~~~~~-~~~~-l~~-----~~~~~~~~~~~~~-~~~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~ 290 (295)
T TIGR02032 219 GEDLKKYLKDFLA-RRPE-LKD-----AETVEVIGAPIPI-GRPDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDV 290 (295)
T ss_pred CCCHHHHHHHHHH-hCcc-ccc-----CcEEeeeceeecc-CCCCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHH
Confidence 2233444443331 1111 100 0001111 1122 124557788999999999999999999999999999999
Q ss_pred HHHhc
Q 009994 364 LRNLL 368 (520)
Q Consensus 364 La~~L 368 (520)
+|+.|
T Consensus 291 aa~~~ 295 (295)
T TIGR02032 291 AAEVI 295 (295)
T ss_pred HHhhC
Confidence 99865
No 51
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.97 E-value=1.4e-29 Score=279.74 Aligned_cols=323 Identities=18% Similarity=0.171 Sum_probs=205.7
Q ss_pred CcEEEECCCHHHHHHHHHHhhC--CCeEEEEccCCCCCCceeeeeeccchHHHHHhcC--chhHHhhcccceeceEEEEE
Q 009994 55 TDVIIVGAGVAGAALAHTLGKD--GRRVHVIERDVTEPDRIVGELLQPGGYLKLVELG--LEDCVEEIDAQQVLGYALFK 130 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~--G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lG--l~~~l~~~~~~~~~~~~~~~ 130 (520)
++|+||||||+||++|+.|+++ |++|+|+||.+.......|..+++++++.|+.++ +.+.+.... .......+..
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~-~~~~~~~~~~ 79 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAF-NHWDDIDVHF 79 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhc-ccCCceEEEE
Confidence 4799999999999999999998 8999999999766666678889999999998776 223332211 1122233333
Q ss_pred CCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeE
Q 009994 131 DGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLT 209 (520)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~v 209 (520)
.+.... . .......++|.+|.+.|.+.+.+. ++++++++ ++++.+ ....+|+|
T Consensus 80 ~g~~~~-~-------~g~~~~~i~R~~L~~~L~e~a~~~-GV~i~~g~~v~~i~~-----------------~~~~~D~V 133 (765)
T PRK08255 80 KGRRIR-S-------GGHGFAGIGRKRLLNILQARCEEL-GVKLVFETEVPDDQA-----------------LAADADLV 133 (765)
T ss_pred CCEEEE-E-------CCeeEecCCHHHHHHHHHHHHHHc-CCEEEeCCccCchhh-----------------hhcCCCEE
Confidence 332210 0 111123588999999999999987 79998887 554321 01359999
Q ss_pred EEecCCcchhhhhhcCCCC-CCcccceeeEEeccCCCCCCceEEE-ecCCCc--EEEEecCCCeEEEEEEeCCC-----C
Q 009994 210 IVCDGCFSNLRRSLCKPKV-DVPSCFVGLVLENCQLPFANHGHVI-LADPSP--ILFYPISSTEVRCLVDVPGQ-----K 280 (520)
Q Consensus 210 V~AdG~~S~vR~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~p~~~~~~~~~~~~~~~-----~ 280 (520)
|+|||.+|.+|+.+..... ........+......-........+ ....++ ...||++++...+++..+.+ .
T Consensus 134 VgADG~~S~vR~~~~~~~~~~~~~~~~~~~w~g~~~~~~~~~~~~~~~~~g~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 213 (765)
T PRK08255 134 IASDGLNSRIRTRYADTFQPDIDTRRCRFVWLGTHKVFDAFTFAFEETEHGWFQAHAYRFDDDTSTFIVETPEEVWRAAG 213 (765)
T ss_pred EEcCCCCHHHHHHHHhhcCCceecCCCceEEecCCCcccceeEEEEecCCceEEEEEeeeCCCCcEEEEEcCHHHHHhcC
Confidence 9999999999998742111 1111111111111110001111111 112232 24578877766666665422 1
Q ss_pred CCCCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEec-CCCCCCCCCCCCc----EEEEccCCCCCCCCCCchhh
Q 009994 281 VPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMP-NRSMPADPQPTPG----ALLMGDAFNMRHPLTGGGMT 355 (520)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~gr----v~LvGDAAh~~~P~~G~G~n 355 (520)
.+..+.++..+.+.+.+....+.. . +...........|. .......+|..|| |+|+|||||.++|..|||+|
T Consensus 214 ~~~~~~~~~~~~l~~~f~~~~~~~--~-li~~~~~~~~~~w~~~~~~~~~~w~~gr~~~~v~liGDAAH~~~P~~GqG~~ 290 (765)
T PRK08255 214 LDEMSQEESIAFCEKLFADYLDGH--P-LMSNASHLRGSAWINFPRVVCERWVHWNRRVPVVLMGDAAHTAHFSIGSGTK 290 (765)
T ss_pred CccCCHHHHHHHHHHHhHHhcCCC--c-ccccccccccceeeecceeccCCCccCCCcccEEEEEcCcccCCCCcchhHH
Confidence 233345555666666554433321 1 11111110111122 2233467899999 99999999999999999999
Q ss_pred HHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCC
Q 009994 356 VALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSS 412 (520)
Q Consensus 356 ~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~ 412 (520)
+||+||..|+++|.... ..++.+|+.|+++|++++..++..++....+|...
T Consensus 291 ~aieDa~~La~~L~~~~-----~~~~~al~~ye~~R~~r~~~~~~~s~~~~~~~~~~ 342 (765)
T PRK08255 291 LALEDAIELARCLHEHP-----GDLPAALAAYEEERRVEVLRIQNAARNSTEWFENV 342 (765)
T ss_pred HHHHHHHHHHHHHHHcc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeec
Confidence 99999999999997642 25788999999999999999999999777666543
No 52
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.97 E-value=6.9e-28 Score=248.28 Aligned_cols=316 Identities=23% Similarity=0.269 Sum_probs=203.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceee-eeeccchHHHHHhcCchhHHhhcccceeceEEEEEC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVG-ELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKD 131 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g-~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 131 (520)
+++||+||||||||++||+.|++.|++|+|+||+..+..+.++ ..+.+..++.+......+ +. ....+..++..
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~-i~----~~v~~~~~~~~ 76 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE-IE----RKVTGARIYFP 76 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchh-hh----eeeeeeEEEec
Confidence 5699999999999999999999999999999999888777666 778877766554333222 21 13333344333
Q ss_pred CccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEE
Q 009994 132 GKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTI 210 (520)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV 210 (520)
+....+..+. ..++.++|..|++.|.+.+++. |++++.++ +.++..+++.+..+.. . ++ .+++|++||
T Consensus 77 ~~~~~~~~~~------~~~y~v~R~~fd~~La~~A~~a-Gae~~~~~~~~~~~~~~~~~~~~~~-~-~~--~e~~a~~vI 145 (396)
T COG0644 77 GEKVAIEVPV------GEGYIVDRAKFDKWLAERAEEA-GAELYPGTRVTGVIREDDGVVVGVR-A-GD--DEVRAKVVI 145 (396)
T ss_pred CCceEEecCC------CceEEEEhHHhhHHHHHHHHHc-CCEEEeceEEEEEEEeCCcEEEEEE-c-CC--EEEEcCEEE
Confidence 3332222221 4578999999999999999998 89999987 9999888876542322 2 22 567899999
Q ss_pred EecCCcchhhhhhcCCCCCCcccceeeEEeccCCCCC-CceEEE-e----cCCCcEEEEecCCCeEEEEEEeCCCCCCCC
Q 009994 211 VCDGCFSNLRRSLCKPKVDVPSCFVGLVLENCQLPFA-NHGHVI-L----ADPSPILFYPISSTEVRCLVDVPGQKVPSI 284 (520)
Q Consensus 211 ~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 284 (520)
+|||.+|.+++.++.. ...+..+..........|.+ ...... . .+.++.|+||.+++..++.+...... +..
T Consensus 146 ~AdG~~s~l~~~lg~~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~~~~-~~~ 223 (396)
T COG0644 146 DADGVNSALARKLGLK-DRKPEDYAIGVKEVIEVPDDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLDD-PSL 223 (396)
T ss_pred ECCCcchHHHHHhCCC-CCChhheeEEeEEEEecCCCCceEEEEecCCccCCCceEEEEECCCceEEEEEEEecCC-cCC
Confidence 9999999999999987 22222222222222334322 222222 2 23578899999999888887765333 222
Q ss_pred CchHHHHHHHHhcC-CCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHHHH
Q 009994 285 SNGEMANYLKAMVA-PQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVV 363 (520)
Q Consensus 285 ~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da~~ 363 (520)
.+. . ++++++.. +...+.+.. .+..+ -.....|.......++..+++++|||||..++|++|.|+..||..|..
T Consensus 224 ~~~-~-~~l~~f~~~~~~~~~~~~--~~~~~-~~~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~ 298 (396)
T COG0644 224 SPF-L-ELLERFKEHPAIRKLLLG--GKILE-YAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKL 298 (396)
T ss_pred Cch-H-HHHHHHHhCcccchhccC--CceEE-EeeeecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHHHHHH
Confidence 221 1 33333221 111111000 00010 011223333333333677899999999999999999999999999999
Q ss_pred HHHhcCccCCCCChHHHHHHHHHHHHhhcchhH
Q 009994 364 LRNLLKPLHDFNDAASLGRYLESFYTLRKPVAS 396 (520)
Q Consensus 364 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~ 396 (520)
+|+.+.+....+ .+.|..|++..+....
T Consensus 299 Aa~~i~~~~~~~-----~~~l~~Y~~~~~~~~~ 326 (396)
T COG0644 299 AAEAIAEALEGG-----EEALAEYERLLRKSLA 326 (396)
T ss_pred HHHHHHHHHHcC-----hhHHHHHHHHHHHHHH
Confidence 999998653111 4567778877665443
No 53
>PRK11445 putative oxidoreductase; Provisional
Probab=99.97 E-value=1.9e-28 Score=248.63 Aligned_cols=306 Identities=18% Similarity=0.180 Sum_probs=181.9
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCC----CceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEE
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP----DRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFK 130 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~----~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 130 (520)
+||+||||||||+++|+.|+++ ++|+|+||.+... ..++|..+++++.+.|+++|+..................
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~- 79 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTI- 79 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEe-
Confidence 7999999999999999999999 9999999987432 345899999999999999998632111110000000000
Q ss_pred CCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeE
Q 009994 131 DGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLT 209 (520)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~v 209 (520)
....+... ......+.++|.+|.+.|.+.+ +. ++++++++ ++++.++++.+. |++ ..+|+..+++||+|
T Consensus 80 -----~~~~~~~~-~~~~~~~~i~R~~~~~~L~~~~-~~-gv~v~~~~~v~~i~~~~~~~~-v~~-~~~g~~~~i~a~~v 149 (351)
T PRK11445 80 -----DLANSLTR-NYQRSYINIDRHKFDLWLKSLI-PA-SVEVYHNSLCRKIWREDDGYH-VIF-RADGWEQHITARYL 149 (351)
T ss_pred -----cccccchh-hcCCCcccccHHHHHHHHHHHH-hc-CCEEEcCCEEEEEEEcCCEEE-EEE-ecCCcEEEEEeCEE
Confidence 00000000 0111234689999999998854 33 79999887 888887776533 433 24565556889999
Q ss_pred EEecCCcchhhhhhcCCCCCCcccceeeEEe-ccCCCCCCceEEEec---CCCcEEEEecCCCeEEEEEEeCCCCCCCCC
Q 009994 210 IVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILA---DPSPILFYPISSTEVRCLVDVPGQKVPSIS 285 (520)
Q Consensus 210 V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 285 (520)
|+|||.+|.+|+.++.... ...+.++..+ ....+.+ ....++. .+++.|.+|.++.. .+....+... ....
T Consensus 150 V~AdG~~S~vr~~l~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~~W~~p~~~~~-~~g~~~~~~~-~~~~ 224 (351)
T PRK11445 150 VGADGANSMVRRHLYPDHQ--IRKYVAIQQWFAEKHPVP-FYSCIFDNEITDCYSWSISKDGYF-IFGGAYPMKD-GRER 224 (351)
T ss_pred EECCCCCcHHhHHhcCCCc--hhhEEEEEEEecCCCCCC-CcceEEeccCCCceEEEeCCCCcE-Eecccccccc-hHHH
Confidence 9999999999999875422 1223333222 1111211 1122222 23566778875532 2211122110 0000
Q ss_pred chHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCC--CCCCcEEEEccCCCCCCCCCCchhhHHHHHHHH
Q 009994 286 NGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADP--QPTPGALLMGDAFNMRHPLTGGGMTVALSDIVV 363 (520)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~grv~LvGDAAh~~~P~~G~G~n~al~Da~~ 363 (520)
.+.+.+++.+ ....+.+.+. .. ...+........ +..+||+|||||||.++|++|+|++.|++|+..
T Consensus 225 ~~~l~~~l~~-~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~ 293 (351)
T PRK11445 225 FETLKEKLSA-FGFQFGKPVK--------TE--ACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYALDSARI 293 (351)
T ss_pred HHHHHHHHHh-cccccccccc--------cc--cccccCcccccccccCCCCEEEEEcccCccCCccCccHHHHHHhHHH
Confidence 0111222221 1111111110 00 001111111122 235889999999999999999999999999999
Q ss_pred HHHhcCccCCCCChHHHHHHHHHHHHhhcchhH
Q 009994 364 LRNLLKPLHDFNDAASLGRYLESFYTLRKPVAS 396 (520)
Q Consensus 364 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~ 396 (520)
|++.|.+.. ...++.|++..+...-
T Consensus 294 la~~l~~~~--------~~~~~~y~~~~~~~~~ 318 (351)
T PRK11445 294 LSEVLNKQP--------EKLNTAYWRKTRKLRL 318 (351)
T ss_pred HHHHHHhcc--------cchHHHHHHHHHHHHH
Confidence 999997432 4578899988776553
No 54
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.96 E-value=3.1e-28 Score=235.22 Aligned_cols=368 Identities=18% Similarity=0.163 Sum_probs=257.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhC----CCeEEEEccCCCCC---------CceeeeeeccchHHHHHhcCchhHHhhc
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKD----GRRVHVIERDVTEP---------DRIVGELLQPGGYLKLVELGLEDCVEEI 118 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~----G~~V~v~Er~~~~~---------~~~~g~~l~~~~~~~l~~lGl~~~l~~~ 118 (520)
+..+||+||||||+|+++|..|... -.+|.|+|-..++. -..+-..++++....++.+|.||.+...
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~ 113 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHD 113 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhh
Confidence 4579999999999999999999864 46999999874321 1223456889999999999999998877
Q ss_pred ccceeceEEEEECCccccccCCCcCCCCCccceeecchHHHHHHH--HHHHcCCCeEEEece-EEEEEee-----CCeEE
Q 009994 119 DAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMR--EKAASLPNVRLEQGT-VTSLLEE-----NGTIK 190 (520)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~--~~~~~~~~v~i~~~~-v~~~~~~-----~~~v~ 190 (520)
......+..+++.-....+.+..+.... ..+..+....+...|. +...+.+++++.+.+ +.+.... ++...
T Consensus 114 R~~~~~~~~v~Ds~s~a~I~~~~d~~~~-d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~ 192 (481)
T KOG3855|consen 114 RYQKFSRMLVWDSCSAALILFDHDNVGI-DMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGM 192 (481)
T ss_pred ccccccceeeecccchhhhhhccccccc-cceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcc
Confidence 6666677777765444445554333221 2356666677777777 455566789999887 7766541 12222
Q ss_pred EEEEEeCCCcEEEEecCeEEEecCCcchhhhhhcCCCCCCcccceeeEEe---ccCCCCCCceEEEecCCCcEEEEecCC
Q 009994 191 GVQYKTKDGQELRAYAPLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE---NCQLPFANHGHVILADPSPILFYPISS 267 (520)
Q Consensus 191 gv~v~~~~g~~~~~~ad~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~ 267 (520)
...+...+|.. +..|++|+|||.+|.+|+..+++..+..+...+++.. .++......++..|.+.|++.+.|..+
T Consensus 193 ~~~i~l~dg~~--~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP~GpiAllpl~d 270 (481)
T KOG3855|consen 193 WFHITLTDGIN--FATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGPIALLPLSD 270 (481)
T ss_pred eEEEEeccCce--eeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCCCCceeeccccc
Confidence 35566777874 5599999999999999999999888777766666654 333445566777888999999999999
Q ss_pred CeEEEEEEeCCC---CCCCCCchHHHHHHHHhcCCCCCh-hhH--------------HHHHHhhh---------------
Q 009994 268 TEVRCLVDVPGQ---KVPSISNGEMANYLKAMVAPQVPP-ELH--------------EAFVSAVE--------------- 314 (520)
Q Consensus 268 ~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~-~~~--------------~~~~~~~~--------------- 314 (520)
+-....|...++ ...++.+|...+.+...+.-+-+. ++. +.+.....
T Consensus 271 ~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~~~q~pp~V~~v~ 350 (481)
T KOG3855|consen 271 TLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLANQQYPPSVFEVG 350 (481)
T ss_pred ccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCcccccccCCeEEEec
Confidence 877777765422 123445555555555443211110 000 01111110
Q ss_pred cCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHhhcch
Q 009994 315 RGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPV 394 (520)
Q Consensus 315 ~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~ 394 (520)
...-..||+...+++.|...|+.|+|||||.+||+.|||.|++..|+..|...|..+...+-+......|+-|+++|.+.
T Consensus 351 dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS~~~L~~y~~~~~~~ 430 (481)
T KOG3855|consen 351 DKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGSVEHLEPYERERLQH 430 (481)
T ss_pred ccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccchhhhhHHHHHHhhh
Confidence 01123678888888899999999999999999999999999999999999999986532222333456899999999999
Q ss_pred hHHHHHHHHHHHhhhcCCChhHHHHHHHH
Q 009994 395 ASTINTLAGALYKVFSSSPDQARKEMRQA 423 (520)
Q Consensus 395 ~~~~~~~a~~~~~~~~~~~~~~~~~lr~~ 423 (520)
...+......+.++|..+- +....+|..
T Consensus 431 N~~ll~~vdkl~klY~t~~-p~vV~~rt~ 458 (481)
T KOG3855|consen 431 NYVLLGAVDKLHKLYATSA-PPVVLLRTF 458 (481)
T ss_pred cchHHHHHHHHHHHHhccC-CcEEEEecc
Confidence 8888888888889988763 334444543
No 55
>PRK10015 oxidoreductase; Provisional
Probab=99.94 E-value=9.7e-25 Score=226.51 Aligned_cols=337 Identities=18% Similarity=0.217 Sum_probs=189.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCce-eeeeeccchHHHHHhcCchh--HHhhcccceeceEEEE
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRI-VGELLQPGGYLKLVELGLED--CVEEIDAQQVLGYALF 129 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~-~g~~l~~~~~~~l~~lGl~~--~l~~~~~~~~~~~~~~ 129 (520)
.++||+||||||||+++|+.|+++|++|+|+||...+.... +|..+.....+.+.. ++.. .++.. .....+.+.
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~-~~~~~~~i~~~--~~~~~~~~~ 80 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIP-GFAASAPVERK--VTREKISFL 80 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcc-cccccCCcccc--ccceeEEEE
Confidence 46999999999999999999999999999999987654332 454454444333211 2211 11110 011112222
Q ss_pred ECCccccccCCCcCCCC-CccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecC
Q 009994 130 KDGKSTRLSYPLEKFHA-DVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAP 207 (520)
Q Consensus 130 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad 207 (520)
.++....+.+....... ...++.+.|..|++.|.+.+++. |++++.++ |+++..+++++.++. . ++. +++||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~-Gv~i~~~~~V~~i~~~~~~v~~v~--~-~~~--~i~A~ 154 (429)
T PRK10015 81 TEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQA-GAQFIPGVRVDALVREGNKVTGVQ--A-GDD--ILEAN 154 (429)
T ss_pred eCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHc-CCEEECCcEEEEEEEeCCEEEEEE--e-CCe--EEECC
Confidence 33222223332211111 22467899999999999999887 89999886 889887777655443 2 232 47799
Q ss_pred eEEEecCCcchhhhhhcCCCCCCcc-cceeeEEeccCCCC------------CCceEEEecC--CC---cEEEEecCCCe
Q 009994 208 LTIVCDGCFSNLRRSLCKPKVDVPS-CFVGLVLENCQLPF------------ANHGHVILAD--PS---PILFYPISSTE 269 (520)
Q Consensus 208 ~vV~AdG~~S~vR~~l~~~~~~~~~-~~~~~~~~~~~~~~------------~~~~~~~~~~--~~---~~~~~p~~~~~ 269 (520)
+||+|||.+|.+++.++........ ...++... ..++. ....+++.+. ++ ..|+|+.. +.
T Consensus 155 ~VI~AdG~~s~v~~~lg~~~~~~~~~~~~gvk~~-~~~~~~~i~~~~~~~~~~g~~w~~~g~~~~g~~g~G~~~~~~-d~ 232 (429)
T PRK10015 155 VVILADGVNSMLGRSLGMVPASDPHHYAVGVKEV-IGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNK-DS 232 (429)
T ss_pred EEEEccCcchhhhcccCCCcCCCcCeEEEEEEEE-EeCCHHHhhHhhcCCCCCCeEEEecCccCCCCCCceEEEEcC-Cc
Confidence 9999999999999999864322222 12333211 11221 1122333321 12 34566644 44
Q ss_pred EEEEEEeCCCCCCCCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCe-----EEecCCCC-CCCCCCCCcEEEEccCC
Q 009994 270 VRCLVDVPGQKVPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNI-----RTMPNRSM-PADPQPTPGALLMGDAF 343 (520)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~~~~-~~~~~~~grv~LvGDAA 343 (520)
..+.+.+.-..... ......+++.+... .+.+.+. +..+.+ ...|.... ..++...+|++++||||
T Consensus 233 v~vGv~~~~~~~~~-~~~~~~~~l~~~~~---~p~~~~~----~~~~~~~e~~~~~ip~gg~~~~~~~~~~g~llvGDAA 304 (429)
T PRK10015 233 ISLGLVCGLGDIAH-AQKSVPQMLEDFKQ---HPAIRPL----ISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAA 304 (429)
T ss_pred EEEEEEEehhhhcc-CCCCHHHHHHHHhh---ChHHHHH----hcCCEEEEEeeEEcccCCcccCCccccCCeEEEeccc
Confidence 56555322111111 11233334433211 1222221 111111 12232211 22355678999999999
Q ss_pred CCCCC--CCCchhhHHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHhhcch-hHHHHHHHHHHHhhhc
Q 009994 344 NMRHP--LTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPV-ASTINTLAGALYKVFS 410 (520)
Q Consensus 344 h~~~P--~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~a~~~~~~~~ 410 (520)
..++| ++|+||+.||.++...|+.+.+....++ -....|+.|++.-+.. ...-....+.+..++.
T Consensus 305 g~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d--~s~~~l~~Y~~~~~~~~~~~~l~~~~~~~~~~~ 372 (429)
T PRK10015 305 GFCLNLGFTVRGMDLAIASAQAAATTVIAAKERAD--FSASSLAQYKRELEQSCVMRDMQHFRKIPALME 372 (429)
T ss_pred ccccccCccccchhHHHHHHHHHHHHHHHHHhcCC--CccccHHHHHHHHHHCHHHHHHHHHhChHhhhc
Confidence 99985 6999999999999999998876532111 1234678888776543 3332333444444443
No 56
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.94 E-value=1.6e-24 Score=223.37 Aligned_cols=306 Identities=21% Similarity=0.204 Sum_probs=181.4
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceece-EEEEECCcc
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLG-YALFKDGKS 134 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~-~~~~~~~~~ 134 (520)
||+||||||||+++|+.|++.|++|+|+|+.+... ......++.. .++++++.+.+.. ...+ +.+...+..
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 72 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIP-GNHTYGVWDD---DLSDLGLADCVEH----VWPDVYEYRFPKQP 72 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCC-CCccccccHh---hhhhhchhhHHhh----cCCCceEEecCCcc
Confidence 79999999999999999999999999999986422 1112223322 2445565443322 1122 222211111
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecC
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDG 214 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG 214 (520)
... ......+++..|.+.|.+.+.+. +++++.++|+++..+++.. +.+...+|+ +++|++||+|||
T Consensus 73 ~~~---------~~~~~~i~~~~l~~~l~~~~~~~-gv~~~~~~v~~i~~~~~~~--~~v~~~~g~--~~~a~~VI~A~G 138 (388)
T TIGR01790 73 RKL---------GTAYGSVDSTRLHEELLQKCPEG-GVLWLERKAIHAEADGVAL--STVYCAGGQ--RIQARLVIDARG 138 (388)
T ss_pred hhc---------CCceeEEcHHHHHHHHHHHHHhc-CcEEEccEEEEEEecCCce--eEEEeCCCC--EEEeCEEEECCC
Confidence 111 11223588999999999999887 7888878888887764432 344455665 366999999999
Q ss_pred CcchhhhhhcCCCCCCcccceeeEEeccCCCCCCceEEEec----C----------CCcEEEEecCCCeEEEEEEeCCCC
Q 009994 215 CFSNLRRSLCKPKVDVPSCFVGLVLENCQLPFANHGHVILA----D----------PSPILFYPISSTEVRCLVDVPGQK 280 (520)
Q Consensus 215 ~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----------~~~~~~~p~~~~~~~~~~~~~~~~ 280 (520)
.+|.+++........ ...+.|+.+.....+.+....+++. + ++++|++|.++++..+...... .
T Consensus 139 ~~s~~~~~~~~~~~~-~q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~~~-~ 216 (388)
T TIGR01790 139 FGPLVQYVRFPLNVG-FQVAYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEETSLA-D 216 (388)
T ss_pred CchhcccccCCCCce-EEEEEEEEEEEcCCCCCCCceEEEeccccccccccccCCCCceEEEeecCCCeEEEEecccc-C
Confidence 999775433221111 1235555544221111111111111 1 1256889998876544322111 1
Q ss_pred CCCCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHH
Q 009994 281 VPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSD 360 (520)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~D 360 (520)
.+....+++++.+.+.+... ..... .+.......+|+.... ++..+|++++|||||+++|++|+|++.++++
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~-g~~~~-----~i~~~~~~~iP~~~~~--~~~~~rv~liGdAAg~~~P~tG~Gi~~al~~ 288 (388)
T TIGR01790 217 RPALPRDRLRQRILARLNAQ-GWQIK-----TIEEEEWGALPVGLPG--PFLPQRVAAFGAAAGMVHPTTGYSVARALSD 288 (388)
T ss_pred CCCCCHHHHHHHHHHHHHHc-CCeee-----EEEeeeeEEEecccCC--CccCCCeeeeechhcCcCCcccccHHHHHHH
Confidence 12334556666665544211 10100 0111122344554432 2367899999999999999999999999999
Q ss_pred HHHHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHH
Q 009994 361 IVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVAST 397 (520)
Q Consensus 361 a~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~ 397 (520)
+..+++.|.+....+ ...+++.|+...+++...
T Consensus 289 a~~la~~l~~~~~~~----~~~~~~~~~~~~~~~~~~ 321 (388)
T TIGR01790 289 APGLAAAIAQALCQS----SELATAAWDGLWPTERRR 321 (388)
T ss_pred HHHHHHHHHHHhccC----HHHHHHHHHHhchHHHHH
Confidence 999999997653211 356788887665555444
No 57
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.93 E-value=1.6e-24 Score=225.59 Aligned_cols=336 Identities=22% Similarity=0.214 Sum_probs=206.5
Q ss_pred cEEEECCCHHHHHHHHHHhhCC---CeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhH--HhhcccceeceEEEEE
Q 009994 56 DVIIVGAGVAGAALAHTLGKDG---RRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDC--VEEIDAQQVLGYALFK 130 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G---~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~--l~~~~~~~~~~~~~~~ 130 (520)
||+|||||+||.++|..|++.+ ++|+|||+.. .+...+|+...|.....++.+|+.+. +.+.......|..+..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~-~~~~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~ 79 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD-IPRIGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVN 79 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS-S---SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC-CCCCCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeee
Confidence 7999999999999999999998 8999999984 55677899999999999999999976 6665555545544421
Q ss_pred -C--CccccccCC---------------------------------------------CcC-CCCCccceeecchHHHHH
Q 009994 131 -D--GKSTRLSYP---------------------------------------------LEK-FHADVSGRSFHNGRFIQR 161 (520)
Q Consensus 131 -~--~~~~~~~~~---------------------------------------------~~~-~~~~~~~~~~~~~~l~~~ 161 (520)
. +......|. ..+ ......++.++|..|.+.
T Consensus 80 w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~~ 159 (454)
T PF04820_consen 80 WGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQF 159 (454)
T ss_dssp SSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHHH
T ss_pred cCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHHH
Confidence 1 111000000 000 012345789999999999
Q ss_pred HHHHHHcCCCeEEEeceEEEEEeeC-CeEEEEEEEeCCCcEEEEecCeEEEecCCcchhhhhh-cCCCCCCcc---ccee
Q 009994 162 MREKAASLPNVRLEQGTVTSLLEEN-GTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLRRSL-CKPKVDVPS---CFVG 236 (520)
Q Consensus 162 L~~~~~~~~~v~i~~~~v~~~~~~~-~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~vR~~l-~~~~~~~~~---~~~~ 236 (520)
|++.+.+. ||+++.++|+++..++ +.+. .+...+|+ +++||++|+|+|.+|.+.+.. ..+...... ...+
T Consensus 160 L~~~A~~~-Gv~~~~g~V~~v~~~~~g~i~--~v~~~~g~--~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~~d~a 234 (454)
T PF04820_consen 160 LRRHAEER-GVEVIEGTVVDVELDEDGRIT--AVRLDDGR--TIEADFFIDASGRRSLLARKALKVGFRDWSDWLPNDRA 234 (454)
T ss_dssp HHHHHHHT-T-EEEET-EEEEEE-TTSEEE--EEEETTSE--EEEESEEEE-SGGG-CCCCCCT-EEEEEETTTCEEEEE
T ss_pred HHHHHhcC-CCEEEeCEEEEEEEcCCCCEE--EEEECCCC--EEEEeEEEECCCccchhhHhhhcCCCccccccccccEE
Confidence 99999998 8999999988877654 4444 34566676 466999999999999887773 222211111 1233
Q ss_pred eEEe--ccCCCCCCceEEEecCCCcEEEEecCCCeEEEEEEeCCCCCCCCCchHHHHHHHHhcCCCCChhhHHHHHHhhh
Q 009994 237 LVLE--NCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQKVPSISNGEMANYLKAMVAPQVPPELHEAFVSAVE 314 (520)
Q Consensus 237 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 314 (520)
+... ..+ +..........+.|++|.+|+.++... .+.+..+.. +.++..+.+.+.+.... .
T Consensus 235 v~~~~~~~~-~~~~~T~~~a~~~GW~W~IPL~~~~~~-G~V~s~~~~---s~~~A~~~l~~~l~~~~------------~ 297 (454)
T PF04820_consen 235 VAVQVPNED-PPEPYTRSTAFEAGWIWYIPLQNRRGS-GYVYSSDFI---SDDEAEAELLAYLGGSP------------E 297 (454)
T ss_dssp EEEEEE-SS-CTTSSEEEEEESSEEEEEEEESSEEEE-EEEEETTTS---HHHHHHHHHHHHHTCHC------------T
T ss_pred EEEecCcCC-CCCCceeEEecCCceEEEccCCCcceE-EEEeccccC---CHHHHHHHHHHhcchhh------------h
Confidence 3322 112 223344555667899999999997655 333332211 23333333433332110 0
Q ss_pred cCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHhhcch
Q 009994 315 RGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPV 394 (520)
Q Consensus 315 ~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~ 394 (520)
... ...+.......+...+|+++|||||..++|+.++|+.+++..+..|+..|.... . . +.+++.|++..+..
T Consensus 298 ~~~-~~i~~~~g~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~~~~---~-~--~~~~~~Yn~~~~~~ 370 (454)
T PF04820_consen 298 AEP-RHIRFRSGRRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALPDDD---F-S--PAALDRYNRRMRRE 370 (454)
T ss_dssp TSC-EEEE-S-EEESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHHCTT---C-C--HHHHHHHHHHHHHH
T ss_pred cch-hhhcccccchhhcccCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcccCC---C-C--HHHHHHHHHHHHHH
Confidence 001 222222223555667889999999999999999999999999999999887531 1 1 56889999999998
Q ss_pred hHHHHHHHHHHHhhhcCCChhHHHHHH
Q 009994 395 ASTINTLAGALYKVFSSSPDQARKEMR 421 (520)
Q Consensus 395 ~~~~~~~a~~~~~~~~~~~~~~~~~lr 421 (520)
...+..+....|..-...+.++....|
T Consensus 371 ~~~~~~fi~~hY~~~~r~ds~FW~~~~ 397 (454)
T PF04820_consen 371 YERIRDFISLHYQLSRRRDSPFWRARR 397 (454)
T ss_dssp HHHHHHHHHHHHHTHHS-SSHHHHHHC
T ss_pred HHHHHHHHHHHHccccCCCCHHHHhcc
Confidence 888888888888775555556555443
No 58
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.93 E-value=1.1e-23 Score=218.88 Aligned_cols=319 Identities=21% Similarity=0.243 Sum_probs=179.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCce-eeeeeccchHHHHHhcCchh--HHhhcccceeceEEEE
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRI-VGELLQPGGYLKLVELGLED--CVEEIDAQQVLGYALF 129 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~-~g~~l~~~~~~~l~~lGl~~--~l~~~~~~~~~~~~~~ 129 (520)
+++||+||||||||+++|+.|+++|++|+|+||...+.... +|..+.....+.+-. .+.+ .++.. .....+.+.
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~-~~~~~~~~~~~--~~~~~~~~~ 80 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIP-GFADSAPVERL--ITHEKLAFM 80 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhh-hhhhcCcccce--eeeeeEEEE
Confidence 46999999999999999999999999999999987654433 344444433332200 0100 00110 011112222
Q ss_pred ECCccccccCCCcC-CCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecC
Q 009994 130 KDGKSTRLSYPLEK-FHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAP 207 (520)
Q Consensus 130 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad 207 (520)
.........+.... ......++.+.|..|++.|.+.+++. |++++.++ |+++..+++.+.+++ .+|+ +++||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~-Gv~i~~~~~V~~i~~~~g~v~~v~---~~g~--~i~A~ 154 (428)
T PRK10157 81 TEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEA-GAQLITGIRVDNLVQRDGKVVGVE---ADGD--VIEAK 154 (428)
T ss_pred cCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHC-CCEEECCCEEEEEEEeCCEEEEEE---cCCc--EEECC
Confidence 22222222222111 11233467889999999999999887 89999886 999887777654432 3454 36799
Q ss_pred eEEEecCCcchhhhhhcCCCCCCcccceeeEEe-ccCCC-----------C-CCceEEEecC--CC---cEEEEecCCCe
Q 009994 208 LTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLP-----------F-ANHGHVILAD--PS---PILFYPISSTE 269 (520)
Q Consensus 208 ~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~-----------~-~~~~~~~~~~--~~---~~~~~p~~~~~ 269 (520)
+||+|||.+|.+++.++....... ....+.++ ...++ . +...+++.+. ++ ..|+|+. .+.
T Consensus 155 ~VI~A~G~~s~l~~~lgl~~~~~~-~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~g~~ggG~~~~~-~~~ 232 (428)
T PRK10157 155 TVILADGVNSILAEKLGMAKRVKP-TDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTN-ENT 232 (428)
T ss_pred EEEEEeCCCHHHHHHcCCCCCCCC-cEEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEEECCCCCCcCceeEEEc-CCe
Confidence 999999999999999986532222 12222111 01111 1 1122333332 21 2356654 344
Q ss_pred EEEEEEeCCCCCC--CCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCe-----EEecCCC-CCCCCCCCCcEEEEcc
Q 009994 270 VRCLVDVPGQKVP--SISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNI-----RTMPNRS-MPADPQPTPGALLMGD 341 (520)
Q Consensus 270 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~~~-~~~~~~~~grv~LvGD 341 (520)
..+.+....+... .....++.+.+.+ .| .+...+ ..+.. ...|... ....+...++++++||
T Consensus 233 ~svG~~~~~~~~~~~~~~~~~~l~~~~~--~p----~v~~~~----~~~~~~~~~~~~ip~~g~~~~~~~~~~g~llvGD 302 (428)
T PRK10157 233 LSLGLVCGLHHLHDAKKSVPQMLEDFKQ--HP----AVAPLI----AGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGD 302 (428)
T ss_pred EEEEEEEehHHhcccCCCHHHHHHHHHh--Cc----hHHHHh----CCCeEHHHHhhHhhcCCcccCCceecCCeEEEec
Confidence 4555433211111 1122233222221 11 111111 10111 1112211 1233456789999999
Q ss_pred CCCCCCC--CCCchhhHHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHhhcch
Q 009994 342 AFNMRHP--LTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPV 394 (520)
Q Consensus 342 AAh~~~P--~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~ 394 (520)
||..++| ++|+|++.||..+..+|+.+.+....+ +.....|..|++.-+..
T Consensus 303 AAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~--~~s~~~l~~Y~~~l~~~ 355 (428)
T PRK10157 303 AAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSD--DFSKQKLAEYRQHLESG 355 (428)
T ss_pred ccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcC--CcchhhHHHHHHHHHHh
Confidence 9999998 599999999999999999887653211 22345788888764443
No 59
>PLN02697 lycopene epsilon cyclase
Probab=99.92 E-value=1.6e-22 Score=212.39 Aligned_cols=313 Identities=19% Similarity=0.201 Sum_probs=189.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEE-
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFK- 130 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~- 130 (520)
...+||+||||||||+++|..|++.|++|+|+|+..... .. ..++ ...++.+|+.+.+... ..+..++.
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~-~n--~GvW---~~~l~~lgl~~~i~~~----w~~~~v~~~ 175 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT-NN--YGVW---EDEFKDLGLEDCIEHV----WRDTIVYLD 175 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCC-Cc--cccc---hhHHHhcCcHHHHHhh----cCCcEEEec
Confidence 456999999999999999999999999999999863211 11 2222 2457788887766531 22233332
Q ss_pred CCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCeEE
Q 009994 131 DGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTI 210 (520)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV 210 (520)
++..... .... ..++|..|.+.|.+.+.+. ++++..++|+++.++++.+..+ ...+|. +++|++||
T Consensus 176 ~~~~~~~--------~~~Y-g~V~R~~L~~~Ll~~a~~~-GV~~~~~~V~~I~~~~~~~~vv--~~~dG~--~i~A~lVI 241 (529)
T PLN02697 176 DDKPIMI--------GRAY-GRVSRTLLHEELLRRCVES-GVSYLSSKVDRITEASDGLRLV--ACEDGR--VIPCRLAT 241 (529)
T ss_pred CCceeec--------cCcc-cEEcHHHHHHHHHHHHHhc-CCEEEeeEEEEEEEcCCcEEEE--EEcCCc--EEECCEEE
Confidence 2222111 0111 2488999999999999876 7888777799988776654322 234565 36799999
Q ss_pred EecCCcchhhhhhcCCC--C-CCcccceeeEEeccCCCCCCceEEEec---------------CCCcEEEEecCCCeEEE
Q 009994 211 VCDGCFSNLRRSLCKPK--V-DVPSCFVGLVLENCQLPFANHGHVILA---------------DPSPILFYPISSTEVRC 272 (520)
Q Consensus 211 ~AdG~~S~vR~~l~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~p~~~~~~~~ 272 (520)
+|||.+|. +.+..+. + .......|+.+.-...+.+....+++. .++++|++|.++++..+
T Consensus 242 ~AdG~~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~~d~~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~V 319 (529)
T PLN02697 242 VASGAASG--RLLQYEVGGPRVCVQTAYGVEVEVENNPYDPSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFF 319 (529)
T ss_pred ECCCcChh--hhhccccCCCCcccEEEEEEEEEecCCCCCcchheeeccccccccccccccCCCceEEEEeecCCCeEEE
Confidence 99999993 2222211 1 112345555554222222211122222 12456889999986555
Q ss_pred EEE-eCCCCCCCCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCC
Q 009994 273 LVD-VPGQKVPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTG 351 (520)
Q Consensus 273 ~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G 351 (520)
.-. +.. .+....+.+++++.+.+... .-.. ..+........|+.. +.... .++++++||||+++||.+|
T Consensus 320 E~T~l~~--~~~l~~~~l~~~L~~~l~~~-Gi~~-----~~i~~~E~g~iPm~g-~~~~~-~~~vl~vG~AAG~vhPsTG 389 (529)
T PLN02697 320 EETCLAS--KDAMPFDLLKKRLMSRLETM-GIRI-----LKTYEEEWSYIPVGG-SLPNT-EQKNLAFGAAASMVHPATG 389 (529)
T ss_pred EEeeecc--CCCCCHHHHHHHHHHHHHhC-CCCc-----ceEEEEEeeeecCCC-CCccc-CCCeeEeehhhcCCCCchh
Confidence 222 211 12334456666666554311 0000 011111222345533 22222 6789999999999999999
Q ss_pred chhhHHHHHHHHHHHhcCccCCCCC-------hHHHHHHHHHHHHhhcchhHHHHH
Q 009994 352 GGMTVALSDIVVLRNLLKPLHDFND-------AASLGRYLESFYTLRKPVASTINT 400 (520)
Q Consensus 352 ~G~n~al~Da~~La~~L~~~~~~~~-------~~~~~~~L~~Y~~~R~~~~~~~~~ 400 (520)
.|+..++.+|..+|+.+++....++ .......++.|+............
T Consensus 390 y~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~~r~~~ 445 (529)
T PLN02697 390 YSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQERKRQRA 445 (529)
T ss_pred hhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHHHHHHHH
Confidence 9999999999999999987653332 124567888888776655444333
No 60
>PLN02463 lycopene beta cyclase
Probab=99.91 E-value=1.6e-21 Score=201.79 Aligned_cols=290 Identities=19% Similarity=0.219 Sum_probs=174.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEE
Q 009994 51 NGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFK 130 (520)
Q Consensus 51 ~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 130 (520)
....+||+||||||||+++|..|++.|++|+|+|+.+.... +....+ -.+.++++|+.+++... .........
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~-p~~~g~---w~~~l~~lgl~~~l~~~---w~~~~v~~~ 97 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIW-PNNYGV---WVDEFEALGLLDCLDTT---WPGAVVYID 97 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchh-ccccch---HHHHHHHCCcHHHHHhh---CCCcEEEEe
Confidence 35569999999999999999999999999999999753211 111111 12467888998877542 111112222
Q ss_pred CCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCeEE
Q 009994 131 DGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTI 210 (520)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV 210 (520)
++..... ..+. ..++|.+|.+.|.+.+.+. ++++..++|++++++++. +.+...+|+ +++||+||
T Consensus 98 ~~~~~~~--------~~~y-~~V~R~~L~~~Ll~~~~~~-GV~~~~~~V~~I~~~~~~---~~V~~~dG~--~i~A~lVI 162 (447)
T PLN02463 98 DGKKKDL--------DRPY-GRVNRKKLKSKMLERCIAN-GVQFHQAKVKKVVHEESK---SLVVCDDGV--KIQASLVL 162 (447)
T ss_pred CCCCccc--------cCcc-eeEEHHHHHHHHHHHHhhc-CCEEEeeEEEEEEEcCCe---EEEEECCCC--EEEcCEEE
Confidence 2221111 1112 2478999999999999876 799887779999887764 445566775 36699999
Q ss_pred EecCCcchhhhhhcCCCCCCcccceeeEEeccCCCCCCceEEE-------ec--------C---CCcEEEEecCCCeEEE
Q 009994 211 VCDGCFSNLRRSLCKPKVDVPSCFVGLVLENCQLPFANHGHVI-------LA--------D---PSPILFYPISSTEVRC 272 (520)
Q Consensus 211 ~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--------~---~~~~~~~p~~~~~~~~ 272 (520)
+|||.+|++++.-. +.........++.......+.+....++ .+ + ++..+++|.++++..+
T Consensus 163 ~AdG~~s~l~~~~~-~~~~g~Q~a~Gi~~ev~~~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~v 241 (447)
T PLN02463 163 DATGFSRCLVQYDK-PFNPGYQVAYGILAEVDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFL 241 (447)
T ss_pred ECcCCCcCccCCCC-CCCccceeeeeEEeecCCCCcccccchhhhcChhhccccchhhhccCCCCceEEEEecCCCeEEE
Confidence 99999998875311 1111112334444431111111111111 11 1 3467889999886333
Q ss_pred EEEeCCCCCCCCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCc
Q 009994 273 LVDVPGQKVPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGG 352 (520)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~ 352 (520)
..+.-. ..+..+.+++++.+.+.+. .+.-... .+........|+... .+...+|++++||||.+++|.+|.
T Consensus 242 EeT~l~-s~~~~~~~~lk~~L~~~l~-~~Gi~~~-----~i~~~E~~~IPmg~~--~~~~~~~~~~~G~aag~v~p~tG~ 312 (447)
T PLN02463 242 EETSLV-ARPGLPMDDIQERMVARLR-HLGIKVK-----SVEEDEKCVIPMGGP--LPVIPQRVLGIGGTAGMVHPSTGY 312 (447)
T ss_pred Eeeeee-cCCCCCHHHHHHHHHHHHH-HCCCCcc-----eeeeeeeeEeeCCCC--CCCCCCCEEEecchhcCcCCCccc
Confidence 222100 1122334566666655432 1110100 111112223455432 223467999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCccC
Q 009994 353 GMTVALSDIVVLRNLLKPLH 372 (520)
Q Consensus 353 G~n~al~Da~~La~~L~~~~ 372 (520)
|+..++..+..+|+.+++..
T Consensus 313 ~i~~~~~~~~~~a~~~~~~~ 332 (447)
T PLN02463 313 MVARTLAAAPIVADAIVEYL 332 (447)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887653
No 61
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.88 E-value=4.5e-20 Score=187.85 Aligned_cols=296 Identities=19% Similarity=0.218 Sum_probs=166.7
Q ss_pred cEEEECCCHHHHHHHHHHhhC--CCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhH----HhhcccceeceEEEE
Q 009994 56 DVIIVGAGVAGAALAHTLGKD--GRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDC----VEEIDAQQVLGYALF 129 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~--G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~----l~~~~~~~~~~~~~~ 129 (520)
||+|||||+||+++|+.|++. |++|+|+|+.+..... .-..+. ..++.+. ++........++.+.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~-~tw~~~--------~~~~~~~~~~~~~~~v~~~W~~~~v~ 71 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN-HTWSFF--------DSDLSDAQHAWLADLVQTDWPGYEVR 71 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc-ccceec--------ccccchhhhhhhhhhheEeCCCCEEE
Confidence 899999999999999999987 9999999997522110 001111 1122111 111111122333333
Q ss_pred ECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEecCe
Q 009994 130 KDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQG-TVTSLLEENGTIKGVQYKTKDGQELRAYAPL 208 (520)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~ 208 (520)
.++...... ..-..+++.+|.+.|.+.+.. + ++.+ +|+++ +++ +|++ .+|++ ++||+
T Consensus 72 ~~~~~~~l~---------~~Y~~I~r~~f~~~l~~~l~~--~--i~~~~~V~~v--~~~---~v~l--~dg~~--~~A~~ 129 (370)
T TIGR01789 72 FPKYRRKLK---------TAYRSMTSTRFHEGLLQAFPE--G--VILGRKAVGL--DAD---GVDL--APGTR--INARS 129 (370)
T ss_pred CcchhhhcC---------CCceEEEHHHHHHHHHHhhcc--c--EEecCEEEEE--eCC---EEEE--CCCCE--EEeeE
Confidence 322221111 112478899999999877643 3 3444 58877 333 2555 46764 56999
Q ss_pred EEEecCCcchhhhhhcCCCCCCcccceeeEEeccCCCCCCceEEE----ec--CC-CcEEEEecCCCeEEEEEEeCCCCC
Q 009994 209 TIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLENCQLPFANHGHVI----LA--DP-SPILFYPISSTEVRCLVDVPGQKV 281 (520)
Q Consensus 209 vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~-~~~~~~p~~~~~~~~~~~~~~~~~ 281 (520)
||+|||.+|+-... ....++.|+..+. ..|........ .. ++ ..++++|.++++..|..+...+ .
T Consensus 130 VI~A~G~~s~~~~~------~~~Q~f~G~~~r~-~~p~~~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s~-~ 201 (370)
T TIGR01789 130 VIDCRGFKPSAHLK------GGFQVFLGREMRL-QEPHGLENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTYYAD-D 201 (370)
T ss_pred EEECCCCCCCcccc------ceeeEEEEEEEEE-cCCCCCCccEEEeeeccCCCCceEEEECcCCCCeEEEEEEeccC-C
Confidence 99999999752211 1235677776652 23332211111 11 22 2345579998865554332211 2
Q ss_pred CCCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCC---CCCCCCCCCcEEEEccCCCCCCCCCCchhhHHH
Q 009994 282 PSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRS---MPADPQPTPGALLMGDAFNMRHPLTGGGMTVAL 358 (520)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al 358 (520)
+..+.+.+++.+.+.+... ..... +.+.. .....|+.. ..+.....++|+++|||||+++|.+|+|++.++
T Consensus 202 ~~l~~~~l~~~l~~~~~~~-g~~~~----~i~~~-e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~ 275 (370)
T TIGR01789 202 PLLDRNALSQRIDQYARAN-GWQNG----TPVRH-EQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAV 275 (370)
T ss_pred CCCCHHHHHHHHHHHHHHh-CCCce----EEEEe-eeeEEeeecCCCcccccccCCceeeeecccccccccccccHHHHH
Confidence 3445566666665543211 00000 01111 112445422 122112245699999999999999999999999
Q ss_pred HHHHHHHHhcCccCCCCChHHHHHHHHHHHHhhcchhHHHHHH
Q 009994 359 SDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTL 401 (520)
Q Consensus 359 ~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~ 401 (520)
+||..|++.+.. .+....+++..|...|+++.....-+
T Consensus 276 ~~a~~la~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (370)
T TIGR01789 276 ENADALAAQPDL-----SSEQLAAFIDSRARRHWSKTGYYRLL 313 (370)
T ss_pred HHHHHHHhccCc-----CccchhhhhhHHHHHHHHHhHHHHHH
Confidence 999999998851 11134456788888887777654433
No 62
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.84 E-value=2.3e-18 Score=176.06 Aligned_cols=277 Identities=22% Similarity=0.235 Sum_probs=169.8
Q ss_pred cEEEECCCHHHHHHHHHH--hhCCCeEEEEccCCCCC-CceeeeeeccchHHHHHhcC-chhHHhhcccceeceEEEEEC
Q 009994 56 DVIIVGAGVAGAALAHTL--GKDGRRVHVIERDVTEP-DRIVGELLQPGGYLKLVELG-LEDCVEEIDAQQVLGYALFKD 131 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~L--a~~G~~V~v~Er~~~~~-~~~~g~~l~~~~~~~l~~lG-l~~~l~~~~~~~~~~~~~~~~ 131 (520)
||+||||||||+++|+.| ++.|.+|+|+|+..... ...+....... .++ +.+.+. ....+..+...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~------~~~~~~~~v~----~~w~~~~v~~~ 70 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEK------DLGPLDSLVS----HRWSGWRVYFP 70 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccc------cccchHHHHh----eecCceEEEeC
Confidence 899999999999999999 88999999999986541 11111111111 112 222222 23344455443
Q ss_pred CccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEE
Q 009994 132 GKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIV 211 (520)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~ 211 (520)
+...... ......+++.+|.+.|.+.+. .+++.+..++|+++..+++ ++.+...+|++ ++|++||+
T Consensus 71 ~~~~~~~--------~~~Y~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~---~~~v~~~~g~~--i~a~~VvD 136 (374)
T PF05834_consen 71 DGSRILI--------DYPYCMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGD---GVLVVLADGRT--IRARVVVD 136 (374)
T ss_pred CCceEEc--------ccceEEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCc---eEEEEECCCCE--EEeeEEEE
Confidence 3321111 112247899999999999998 4577777777999988877 35566778874 66999999
Q ss_pred ecCCcchhhhhhcCCCCCCcccceeeEEeccCCC--CCCceE---EEec----CCCcEEEEecCCCeEEEEEEeCCCCCC
Q 009994 212 CDGCFSNLRRSLCKPKVDVPSCFVGLVLENCQLP--FANHGH---VILA----DPSPILFYPISSTEVRCLVDVPGQKVP 282 (520)
Q Consensus 212 AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~ 282 (520)
|+|..+...+. ....++.|+.+.. +.| +++... +... ...+++++|.++++..+..++-.. .+
T Consensus 137 a~g~~~~~~~~------~~~Q~f~G~~v~~-~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~-~~ 208 (374)
T PF05834_consen 137 ARGPSSPKARP------LGLQHFYGWEVET-DEPVFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFSP-RP 208 (374)
T ss_pred CCCcccccccc------cccceeEEEEEec-cCCCCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEcC-CC
Confidence 99977662221 2235677777652 222 111111 1122 234568889999875554443322 22
Q ss_pred CCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHHH
Q 009994 283 SISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 362 (520)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da~ 362 (520)
..+.+.+++.+.+.+.. ..-... .+.....-..|+......+...++++.+|+|++.++|.+|.++..+++.|.
T Consensus 209 ~~~~~~~~~~l~~~l~~-~g~~~~-----~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~ 282 (374)
T PF05834_consen 209 ALPEEELKARLRRYLER-LGIDDY-----EILEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQAD 282 (374)
T ss_pred CCCHHHHHHHHHHHHHH-cCCCce-----eEEEeecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHH
Confidence 23445555555544321 110100 011112234556433344445667999999999999999999999999999
Q ss_pred HHHHhcCc
Q 009994 363 VLRNLLKP 370 (520)
Q Consensus 363 ~La~~L~~ 370 (520)
.+|..|..
T Consensus 283 ~ia~~l~~ 290 (374)
T PF05834_consen 283 AIADALAK 290 (374)
T ss_pred HHHHHHhh
Confidence 99999875
No 63
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.58 E-value=2e-14 Score=138.61 Aligned_cols=144 Identities=21% Similarity=0.217 Sum_probs=100.2
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeee-------eeccchHHHHHhcCchhHHhhccccee
Q 009994 51 NGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGE-------LLQPGGYLKLVELGLEDCVEEIDAQQV 123 (520)
Q Consensus 51 ~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~-------~l~~~~~~~l~~lGl~~~l~~~~~~~~ 123 (520)
+..++||+||||||+|+++|+.|++.|++|+|+||.........+. .++....+.|+++|+..
T Consensus 22 ~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~---------- 91 (257)
T PRK04176 22 DYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRY---------- 91 (257)
T ss_pred HhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCc----------
Confidence 3557899999999999999999999999999999986542211111 11112223333333220
Q ss_pred ceEEEEECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCC-eEEEEEEEeC----
Q 009994 124 LGYALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENG-TIKGVQYKTK---- 197 (520)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~-~v~gv~v~~~---- 197 (520)
.. . ....+.+++..+...|.+.+.+. |++++.++ |+++..+++ ++.||.+...
T Consensus 92 -----~~-------------~--~~g~~~vd~~~l~~~L~~~A~~~-Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~ 150 (257)
T PRK04176 92 -----KE-------------V--EDGLYVADSVEAAAKLAAAAIDA-GAKIFNGVSVEDVILREDPRVAGVVINWTPVEM 150 (257)
T ss_pred -----ee-------------e--cCcceeccHHHHHHHHHHHHHHc-CCEEEcCceeceeeEeCCCcEEEEEEccccccc
Confidence 00 0 00123467788999999999887 89999887 999887655 7888776431
Q ss_pred C---CcEEEEecCeEEEecCCcchhhhhhcC
Q 009994 198 D---GQELRAYAPLTIVCDGCFSNLRRSLCK 225 (520)
Q Consensus 198 ~---g~~~~~~ad~vV~AdG~~S~vR~~l~~ 225 (520)
+ .+..+++|++||+|+|.+|.+.+.+..
T Consensus 151 ~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~ 181 (257)
T PRK04176 151 AGLHVDPLTIEAKAVVDATGHDAEVVSVLAR 181 (257)
T ss_pred cCCCCCcEEEEcCEEEEEeCCCcHHHHHHHH
Confidence 1 234578899999999999999988753
No 64
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.54 E-value=1.2e-13 Score=132.65 Aligned_cols=142 Identities=25% Similarity=0.311 Sum_probs=97.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeee-------eeccchHHHHHhcCchhHHhhcccceec
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGE-------LLQPGGYLKLVELGLEDCVEEIDAQQVL 124 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~-------~l~~~~~~~l~~lGl~~~l~~~~~~~~~ 124 (520)
..++||+||||||+||++|+.|+++|.+|+|+||+........+. .++....+.++++|+.
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~------------ 86 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIR------------ 86 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCC------------
Confidence 457899999999999999999999999999999996532211110 0111122233332221
Q ss_pred eEEEEECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCC--eEEEEEEEeC----
Q 009994 125 GYALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENG--TIKGVQYKTK---- 197 (520)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~--~v~gv~v~~~---- 197 (520)
.... ....+..++..+.+.|.+.+.+. ++++++++ +.++..+++ ++.||.+...
T Consensus 87 ----------------~~~~--~~g~~~~~~~el~~~L~~~a~e~-GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~ 147 (254)
T TIGR00292 87 ----------------YEDE--GDGYVVADSAEFISTLASKALQA-GAKIFNGTSVEDLITRDDTVGVAGVVINWSAIEL 147 (254)
T ss_pred ----------------eeec--cCceEEeeHHHHHHHHHHHHHHc-CCEEECCcEEEEEEEeCCCCceEEEEeCCccccc
Confidence 0000 00112346778999999999887 69999887 999987766 5888876421
Q ss_pred CC---cEEEEecCeEEEecCCcchhhhhhc
Q 009994 198 DG---QELRAYAPLTIVCDGCFSNLRRSLC 224 (520)
Q Consensus 198 ~g---~~~~~~ad~vV~AdG~~S~vR~~l~ 224 (520)
+| +..+++|++||+|||..|.+.+.+.
T Consensus 148 ~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~ 177 (254)
T TIGR00292 148 AGLHVDPLTQRSRVVVDATGHDAEIVAVCA 177 (254)
T ss_pred cCCCCCCEEEEcCEEEEeecCCchHHHHHH
Confidence 12 3467899999999999998887763
No 65
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.47 E-value=1.9e-12 Score=137.60 Aligned_cols=167 Identities=17% Similarity=0.192 Sum_probs=97.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCc--eeeeeeccchHHHHHhcCchhHHhhccc---------
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDR--IVGELLQPGGYLKLVELGLEDCVEEIDA--------- 120 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~--~~g~~l~~~~~~~l~~lGl~~~l~~~~~--------- 120 (520)
+.++||||||+|.+|+++|+.+++.|.+|+||||.+..... ..+..+.....+..+..|+.+..+....
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~ 138 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGT 138 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCC
Confidence 45789999999999999999999999999999998643211 1111222212222223333211110000
Q ss_pred -------------------ceeceEEEEECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EE
Q 009994 121 -------------------QQVLGYALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VT 180 (520)
Q Consensus 121 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~ 180 (520)
....+..+...........+. ...+......-..+...|.+.+++. +++++.++ |+
T Consensus 139 ~d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r---~~~p~~g~~~g~~l~~~L~~~~~~~-gv~i~~~t~v~ 214 (506)
T PRK06481 139 NDKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKR---THRPHDGSAVGGYLVDGLLKNVQER-KIPLFVNADVT 214 (506)
T ss_pred CCHHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCc---eeccCCCCCChHHHHHHHHHHHHHc-CCeEEeCCeeE
Confidence 000111110000000000000 0000000011134777888888876 79999887 99
Q ss_pred EEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcchhhhh
Q 009994 181 SLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLRRS 222 (520)
Q Consensus 181 ~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~vR~~ 222 (520)
++..+++++++|.+...+++..+++|+.||.|+|.++.-.+.
T Consensus 215 ~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m 256 (506)
T PRK06481 215 KITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDM 256 (506)
T ss_pred EEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHH
Confidence 998878889999887776666678999999999998865433
No 66
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.47 E-value=1.2e-12 Score=118.66 Aligned_cols=139 Identities=27% Similarity=0.270 Sum_probs=92.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceee-------eeeccchHHHHHhcCchhHHhhcccceec
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVG-------ELLQPGGYLKLVELGLEDCVEEIDAQQVL 124 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g-------~~l~~~~~~~l~~lGl~~~l~~~~~~~~~ 124 (520)
..++||+||||||+||++|+.|++.|++|+|+||+........+ ..++..+.++|+++|+.-. +
T Consensus 15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~--~------- 85 (230)
T PF01946_consen 15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYE--E------- 85 (230)
T ss_dssp HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---E--E-------
T ss_pred hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeE--E-------
Confidence 34689999999999999999999999999999998755432221 2345566677777775410 0
Q ss_pred eEEEEECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeC-CeEEEEEEEeC----C
Q 009994 125 GYALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEEN-GTIKGVQYKTK----D 198 (520)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~-~~v~gv~v~~~----~ 198 (520)
....-+..+...+...|...+.+ +|++++..+ |+++...+ +++.||.+.-. .
T Consensus 86 ---------------------~~~g~~v~d~~~~~s~L~s~a~~-aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~ 143 (230)
T PF01946_consen 86 ---------------------YGDGYYVADSVEFTSTLASKAID-AGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMA 143 (230)
T ss_dssp ----------------------SSEEEES-HHHHHHHHHHHHHT-TTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT
T ss_pred ---------------------eCCeEEEEcHHHHHHHHHHHHhc-CCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHh
Confidence 00112345566788888888887 599999998 99988655 89999887531 2
Q ss_pred C---cEEEEecCeEEEecCCcchhhh
Q 009994 199 G---QELRAYAPLTIVCDGCFSNLRR 221 (520)
Q Consensus 199 g---~~~~~~ad~vV~AdG~~S~vR~ 221 (520)
| +..+++|++||+|+|.-+.+-+
T Consensus 144 glHvDPl~i~ak~ViDaTGHda~v~~ 169 (230)
T PF01946_consen 144 GLHVDPLTIRAKVVIDATGHDAEVVR 169 (230)
T ss_dssp --T-B-EEEEESEEEE---SSSSSTS
T ss_pred hcCCCcceEEEeEEEeCCCCchHHHH
Confidence 2 3567899999999998876533
No 67
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.44 E-value=2.5e-12 Score=115.64 Aligned_cols=141 Identities=23% Similarity=0.281 Sum_probs=98.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeee-------eeccchHHHHHhcCchhHHhhcccceec
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGE-------LLQPGGYLKLVELGLEDCVEEIDAQQVL 124 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~-------~l~~~~~~~l~~lGl~~~l~~~~~~~~~ 124 (520)
-.+.||+||||||+||++|+.|++.|.+|+|+||+.....-..+. -++..+.++|+++|+.-.-
T Consensus 28 ~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~--------- 98 (262)
T COG1635 28 YLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEE--------- 98 (262)
T ss_pred hhhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCccee---------
Confidence 346799999999999999999999999999999996543222211 1233344566666653100
Q ss_pred eEEEEECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCC-eEEEEEEEeC----C
Q 009994 125 GYALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENG-TIKGVQYKTK----D 198 (520)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~-~v~gv~v~~~----~ 198 (520)
....-+..+...+...|..++.+. ++++..+. |.++...++ +|.||.+.-. .
T Consensus 99 ---------------------~e~g~~v~ds~e~~skl~~~a~~a-Gaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~ 156 (262)
T COG1635 99 ---------------------EEDGYYVADSAEFASKLAARALDA-GAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMA 156 (262)
T ss_pred ---------------------cCCceEEecHHHHHHHHHHHHHhc-CceeeecceEEEEEEecCCceEEEEEecchhhhc
Confidence 000113455567888888888887 69999997 999887666 7888877421 1
Q ss_pred C---cEEEEecCeEEEecCCcchhhhhh
Q 009994 199 G---QELRAYAPLTIVCDGCFSNLRRSL 223 (520)
Q Consensus 199 g---~~~~~~ad~vV~AdG~~S~vR~~l 223 (520)
+ +..+++|++||+|+|.-..+-+.+
T Consensus 157 ~lhvDPl~i~a~~VvDaTGHda~v~~~~ 184 (262)
T COG1635 157 GLHVDPLTIRAKAVVDATGHDAEVVSFL 184 (262)
T ss_pred ccccCcceeeEEEEEeCCCCchHHHHHH
Confidence 1 345788999999999887665544
No 68
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.39 E-value=1.2e-10 Score=113.83 Aligned_cols=303 Identities=21% Similarity=0.298 Sum_probs=166.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhC------CCeEEEEccCCCCCCcee-eeeeccchHHHHHhcCchhHH-hhccc-ce
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKD------GRRVHVIERDVTEPDRIV-GELLQPGGYLKLVELGLEDCV-EEIDA-QQ 122 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~------G~~V~v~Er~~~~~~~~~-g~~l~~~~~~~l~~lGl~~~l-~~~~~-~~ 122 (520)
...+||+|||||||||++|+.|.+. -++|+|+||......+.. |..+.|.++..|- --|.+. ..+.. ..
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~--P~wke~~apl~t~vT 151 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELL--PDWKEDGAPLNTPVT 151 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhC--cchhhcCCccccccc
Confidence 4579999999999999999999763 479999999987655443 4456777654331 111000 00111 11
Q ss_pred eceEEEEECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEE-eeCCeEEEEEEEe----
Q 009994 123 VLGYALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLL-EENGTIKGVQYKT---- 196 (520)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~-~~~~~v~gv~v~~---- 196 (520)
...+.+..... .+..|....-.....+.++-+.+.++|-+.+++. |+++.-+- +.++. .+++.|.|+...+
T Consensus 152 ~d~~~fLt~~~--~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~-GvEiyPg~aaSevly~edgsVkGiaT~D~GI~ 228 (621)
T KOG2415|consen 152 SDKFKFLTGKG--RISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEEL-GVEIYPGFAASEVLYDEDGSVKGIATNDVGIS 228 (621)
T ss_pred ccceeeeccCc--eeecCCCcccccCCcEEEEHHHHHHHHHHHHHhh-CceeccccchhheeEcCCCcEeeEeecccccc
Confidence 12223322222 2233321111223357888889999999999998 89999886 55655 4567777776543
Q ss_pred CCCcE-------EEEecCeEEEecCCcchhhhhhcCCC---CCCc--ccceee-EEeccCCC--CCCceEEEec----CC
Q 009994 197 KDGQE-------LRAYAPLTIVCDGCFSNLRRSLCKPK---VDVP--SCFVGL-VLENCQLP--FANHGHVILA----DP 257 (520)
Q Consensus 197 ~~g~~-------~~~~ad~vV~AdG~~S~vR~~l~~~~---~~~~--~~~~~~-~~~~~~~~--~~~~~~~~~~----~~ 257 (520)
++|.. .++.|+..|-|.|++..+-+++-... .... .+-.|+ .++..+-. .+....+-++ +.
T Consensus 229 k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglGlKEvWei~~~~~~pG~v~HT~GwPl~~~ 308 (621)
T KOG2415|consen 229 KDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGLKEVWEIDPENHNPGEVAHTLGWPLDND 308 (621)
T ss_pred CCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceeccccceeEecChhhcCCcceeeeccCcccCC
Confidence 23321 35789999999999998877774211 1111 111222 11111111 1111111121 11
Q ss_pred --CcEEEEecCCCeEEEEEEeC-CCCCCCCCchHHHHHHHHhcCCCCChhhHHHHHHhhhcCCeEEecC--------CCC
Q 009994 258 --SPILFYPISSTEVRCLVDVP-GQKVPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPN--------RSM 326 (520)
Q Consensus 258 --~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--------~~~ 326 (520)
+..++|.+.+....+.+.+. .-..|-+++ .+++.+---.| .+.+. ++-+....+.. ...
T Consensus 309 tYGGsFlYh~~d~~VavGlVVgLdY~NP~lsP--~~EFQk~K~hP----~i~~v----leGgk~i~YgARaLNEGGfQsi 378 (621)
T KOG2415|consen 309 TYGGSFLYHFNDPLVAVGLVVGLDYKNPYLSP--YKEFQKMKHHP----SISKV----LEGGKRIAYGARALNEGGFQSI 378 (621)
T ss_pred ccCceeEEEcCCCeEEEEEEEEecCCCCCCCH--HHHHHHhhcCc----chhhh----hcCcceeeehhhhhccCCcccC
Confidence 34467888877655544332 112233332 22322211112 22222 22122111111 111
Q ss_pred CCCCCCCCcEEEEccCCCCCCCCCCchhhHHHHHHHHHHHhcCcc
Q 009994 327 PADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPL 371 (520)
Q Consensus 327 ~~~~~~~grv~LvGDAAh~~~P~~G~G~n~al~Da~~La~~L~~~ 371 (520)
+-..| .+=+|||=+|..++=---.|..+||.++...|+.+-..
T Consensus 379 Pkl~F--PGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~a 421 (621)
T KOG2415|consen 379 PKLVF--PGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEA 421 (621)
T ss_pred ccccc--CCceEeecccccccccccccchhhhhcchhHHHHHHHH
Confidence 11122 23378999999999888999999999999999887543
No 69
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.38 E-value=5.7e-11 Score=122.95 Aligned_cols=214 Identities=19% Similarity=0.231 Sum_probs=130.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCC-ceeeeeeccchHHHHHhcCch---hHHhhcccc------
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD-RIVGELLQPGGYLKLVELGLE---DCVEEIDAQ------ 121 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~-~~~g~~l~~~~~~~l~~lGl~---~~l~~~~~~------ 121 (520)
++++||+|||||+.|+.+|..++.+|++|+|+|++.-... .++...|-.+|.+.|++..+. +++.+....
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH 89 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPH 89 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCcc
Confidence 4789999999999999999999999999999999865432 334556778888888765432 444331110
Q ss_pred ---eeceEEEEECCcc-----------------cc---------------ccCCCcCC-----CCCccceeecchHHHHH
Q 009994 122 ---QVLGYALFKDGKS-----------------TR---------------LSYPLEKF-----HADVSGRSFHNGRFIQR 161 (520)
Q Consensus 122 ---~~~~~~~~~~~~~-----------------~~---------------~~~~~~~~-----~~~~~~~~~~~~~l~~~ 161 (520)
+...+....++.. .. ...|.-.. ........++..+|.-.
T Consensus 90 ~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~ 169 (532)
T COG0578 90 LVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAA 169 (532)
T ss_pred ccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHH
Confidence 1111111111000 00 00000000 00112235566778777
Q ss_pred HHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCeEEEecCCcc-hhhhhhcCCCCCC--ccccee
Q 009994 162 MREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFS-NLRRSLCKPKVDV--PSCFVG 236 (520)
Q Consensus 162 L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~-~~g~~~~~~ad~vV~AdG~~S-~vR~~l~~~~~~~--~~~~~~ 236 (520)
....+.+. |.++...+ |+++..+++ ++||++.+ .+|++++++|+.||.|+|.++ .+++..+...... .....|
T Consensus 170 ~a~~A~~~-Ga~il~~~~v~~~~re~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~~~~vr~skG 247 (532)
T COG0578 170 NARDAAEH-GAEILTYTRVESLRREGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLEQSPHIGVRPSKG 247 (532)
T ss_pred HHHHHHhc-ccchhhcceeeeeeecCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhcccCCCCccceeccc
Confidence 88888887 56665554 999999988 99999988 458889999999999999998 4577665432211 111222
Q ss_pred --eEEeccCCCCCCceEEEec--CCCcEEEEecCCCe
Q 009994 237 --LVLENCQLPFANHGHVILA--DPSPILFYPISSTE 269 (520)
Q Consensus 237 --~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~ 269 (520)
+++.. .++. +...++-+ ++...+++|-.+..
T Consensus 248 sHlVv~~-~~~~-~~a~~~~~~~d~r~~f~iP~~~~~ 282 (532)
T COG0578 248 SHLVVDK-KFPI-NQAVINRCRKDGRIVFAIPYEGKT 282 (532)
T ss_pred eEEEecc-cCCC-CceEEeecCCCCceEEEecCCCCE
Confidence 23322 2333 33444444 34456777877663
No 70
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.35 E-value=2e-10 Score=122.16 Aligned_cols=168 Identities=19% Similarity=0.260 Sum_probs=94.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCC-ceeeeeeccchHHHHHhcCch---hHHh------hcccc
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD-RIVGELLQPGGYLKLVELGLE---DCVE------EIDAQ 121 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~-~~~g~~l~~~~~~~l~~lGl~---~~l~------~~~~~ 121 (520)
++.+||+|||||++|+++|+.|+++|.+|+|+||...... ...+..+-.++.+.+....+. +.+. .....
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~~ss~lihgG~ryl~~~~~~l~~e~l~er~~l~~~~p~ 83 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSSASTKLIHGGLRYLEHYEFRLVREALAEREVLLRMAPH 83 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccccccchHHHhhhccHHHHHHHHHHHHHHHHhCCC
Confidence 4569999999999999999999999999999999753221 122233444454444332110 1111 10000
Q ss_pred eec--eEEEEECC--------------------c-------ccccc-----CCCcC-CC--CCccceeecchHHHHHHHH
Q 009994 122 QVL--GYALFKDG--------------------K-------STRLS-----YPLEK-FH--ADVSGRSFHNGRFIQRMRE 164 (520)
Q Consensus 122 ~~~--~~~~~~~~--------------------~-------~~~~~-----~~~~~-~~--~~~~~~~~~~~~l~~~L~~ 164 (520)
... .+.+-... . ..... .+... .. ..+....++..++...+.+
T Consensus 84 ~~~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~~~~l~~~~~~~~~~~~~~~~L~~~l~g~~~~~dg~vd~~rl~~~l~~ 163 (508)
T PRK12266 84 IIWPMRFVLPHRPHLRPAWMIRAGLFLYDHLGKRKSLPGSRGLDLGRDPAGSPLKPEITRGFEYSDCWVDDARLVVLNAR 163 (508)
T ss_pred cccccceEEEecccccchHHHHHHHHHHHhhcCCCCCChhhhhchhhcccCCCcchhhcEEEEEcCcccCHHHHHHHHHH
Confidence 000 00000000 0 00000 00000 00 0001113455677777878
Q ss_pred HHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCeEEEecCCcch-hhh
Q 009994 165 KAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSN-LRR 221 (520)
Q Consensus 165 ~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~-~~g~~~~~~ad~vV~AdG~~S~-vR~ 221 (520)
.+.+. |+++..++ |+++..+++.+ +|++.+ .+|+..+++|+.||.|+|.++. +++
T Consensus 164 ~A~~~-Ga~i~~~~~V~~i~~~~~~~-~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~ 221 (508)
T PRK12266 164 DAAER-GAEILTRTRVVSARRENGLW-HVTLEDTATGKRYTVRARALVNAAGPWVKQFLD 221 (508)
T ss_pred HHHHc-CCEEEcCcEEEEEEEeCCEE-EEEEEEcCCCCEEEEEcCEEEECCCccHHHHHh
Confidence 88877 78888876 99988776643 466554 3466667899999999999984 434
No 71
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.33 E-value=5.6e-10 Score=114.79 Aligned_cols=166 Identities=22% Similarity=0.273 Sum_probs=94.4
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCC----Cceeeeeecc----chH--HHHHhcCchhHHhhc---ccc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP----DRIVGELLQP----GGY--LKLVELGLEDCVEEI---DAQ 121 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~----~~~~g~~l~~----~~~--~~l~~lGl~~~l~~~---~~~ 121 (520)
+||+|||||++|+++|+.|+++|.+|+|+||..... ....+..+.. ... ...+.+.++..+.+. ...
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~ 80 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPMMLECYQLWAQLEKEAGTKLH 80 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCCCCCCCCeeeeeccCchhHhHHHHHHHHHHHHHHHHhCCeeE
Confidence 599999999999999999999999999999974321 1111111110 001 011222333333221 111
Q ss_pred eeceEEEEE-CCcc-----------------------ccccCCCcCCC------CCccceeecchHHHHHHHHHHHcCCC
Q 009994 122 QVLGYALFK-DGKS-----------------------TRLSYPLEKFH------ADVSGRSFHNGRFIQRMREKAASLPN 171 (520)
Q Consensus 122 ~~~~~~~~~-~~~~-----------------------~~~~~~~~~~~------~~~~~~~~~~~~l~~~L~~~~~~~~~ 171 (520)
...|..... .... ....+|.-... ..+.+..++...+.+.|.+.+++. +
T Consensus 81 ~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~~~-g 159 (380)
T TIGR01377 81 RQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELAEAH-G 159 (380)
T ss_pred eecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHHHHHHc-C
Confidence 112222221 1100 00011110000 012233566778889999888877 7
Q ss_pred eEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCc-chhhhhhcCCC
Q 009994 172 VRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCF-SNLRRSLCKPK 227 (520)
Q Consensus 172 v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~-S~vR~~l~~~~ 227 (520)
+++..++ |+++.++++.+ .+...++ +++||.||.|+|.+ |.+++.++...
T Consensus 160 ~~~~~~~~V~~i~~~~~~~---~v~~~~~---~i~a~~vV~aaG~~~~~l~~~~g~~~ 211 (380)
T TIGR01377 160 ATVRDGTKVVEIEPTELLV---TVKTTKG---SYQANKLVVTAGAWTSKLLSPLGIEI 211 (380)
T ss_pred CEEECCCeEEEEEecCCeE---EEEeCCC---EEEeCEEEEecCcchHHHhhhcccCC
Confidence 8998886 99998776643 3444454 36699999999987 67888776543
No 72
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.33 E-value=1.9e-10 Score=122.35 Aligned_cols=168 Identities=18% Similarity=0.233 Sum_probs=96.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCC-ceeeeeeccchHHHHHhcCch---hHHh------hcccc
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD-RIVGELLQPGGYLKLVELGLE---DCVE------EIDAQ 121 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~-~~~g~~l~~~~~~~l~~lGl~---~~l~------~~~~~ 121 (520)
+.++||+|||||++|+++|+.|+++|.+|+|+||...... ..+...+-.++.+.+....+. +.+. .....
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~ap~ 83 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAAAPH 83 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHhCCc
Confidence 5569999999999999999999999999999999853221 111222333344444432221 1111 11100
Q ss_pred eec--eEEEEEC-Ccccc------------c----cCC------Cc------CCC------CCccceeecchHHHHHHHH
Q 009994 122 QVL--GYALFKD-GKSTR------------L----SYP------LE------KFH------ADVSGRSFHNGRFIQRMRE 164 (520)
Q Consensus 122 ~~~--~~~~~~~-~~~~~------------~----~~~------~~------~~~------~~~~~~~~~~~~l~~~L~~ 164 (520)
... ++.+-.+ ..... . .++ .. ... ..+....++..++...+.+
T Consensus 84 l~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl~~~l~~ 163 (502)
T PRK13369 84 IIWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLVVLNAL 163 (502)
T ss_pred cccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEEEEcCeeecHHHHHHHHHH
Confidence 000 1111100 00000 0 000 00 000 0011123566778888888
Q ss_pred HHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcch-hhh
Q 009994 165 KAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN-LRR 221 (520)
Q Consensus 165 ~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~-vR~ 221 (520)
.+.+. |+++...+ |+++..+++. .+|++.+..|++.+++|+.||.|+|.+|. +.+
T Consensus 164 ~a~~~-Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~ 220 (502)
T PRK13369 164 DAAER-GATILTRTRCVSARREGGL-WRVETRDADGETRTVRARALVNAAGPWVTDVIH 220 (502)
T ss_pred HHHHC-CCEEecCcEEEEEEEcCCE-EEEEEEeCCCCEEEEEecEEEECCCccHHHHHh
Confidence 88887 78888886 9998877654 34666555577777899999999999984 444
No 73
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.33 E-value=2.6e-11 Score=128.01 Aligned_cols=149 Identities=23% Similarity=0.346 Sum_probs=93.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCC-Cceeeeeeccch----HHHHHhcCc--hhHHhhcccceece
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP-DRIVGELLQPGG----YLKLVELGL--EDCVEEIDAQQVLG 125 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~-~~~~g~~l~~~~----~~~l~~lGl--~~~l~~~~~~~~~~ 125 (520)
.+|||+|||||+||+.+|+.+++.|.+|+|+|++.... ...+.-.+...+ .+.++.+|- ....+... ..
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~g----iq 78 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTG----IQ 78 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhcc----Cc
Confidence 46999999999999999999999999999999974221 111111111111 122233331 11111110 01
Q ss_pred EEEEECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEe
Q 009994 126 YALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAY 205 (520)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~gv~v~~~~g~~~~~~ 205 (520)
+...+..+. + ........+++..+...|.+.+.+.+++++..++|+++..+++++.+|.. .+|. .++
T Consensus 79 ~r~ln~skG-----p----AV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t--~dG~--~I~ 145 (618)
T PRK05192 79 FRMLNTSKG-----P----AVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVT--QDGL--EFR 145 (618)
T ss_pred eeecccCCC-----C----ceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEE--CCCC--EEE
Confidence 111111000 0 00001125778889999999998888999988889999888888777765 4565 467
Q ss_pred cCeEEEecCCcch
Q 009994 206 APLTIVCDGCFSN 218 (520)
Q Consensus 206 ad~vV~AdG~~S~ 218 (520)
|+.||+|+|.++.
T Consensus 146 Ak~VIlATGTFL~ 158 (618)
T PRK05192 146 AKAVVLTTGTFLR 158 (618)
T ss_pred CCEEEEeeCcchh
Confidence 9999999998764
No 74
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.32 E-value=3.3e-11 Score=120.84 Aligned_cols=147 Identities=29% Similarity=0.391 Sum_probs=90.5
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEE-ccCCCCCCceeeeeeccchH----HHHHhcCchhHHhhcccceeceEEEEE
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVI-ERDVTEPDRIVGELLQPGGY----LKLVELGLEDCVEEIDAQQVLGYALFK 130 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~-Er~~~~~~~~~g~~l~~~~~----~~l~~lGl~~~l~~~~~~~~~~~~~~~ 130 (520)
||+|||||.||+.||+.+|+.|.+|+|+ ++.......++...+...+. +.++.+| .......+. ....+.+.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalg-g~m~~~aD~-~~i~~~~lN 78 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALG-GLMGRAADE-TGIHFRMLN 78 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT--SHHHHHHH-HEEEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhh-hHHHHHHhH-hhhhhhccc
Confidence 8999999999999999999999999999 33332233333333332222 3334454 111111111 001111111
Q ss_pred CCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCeEE
Q 009994 131 DGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTI 210 (520)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV 210 (520)
..+. .........++|..+.+.+++.+++++++++..++|+++..+++++.||. +.+|+. +.||.||
T Consensus 79 ~skG---------pav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~--~~~g~~--~~a~~vV 145 (392)
T PF01134_consen 79 RSKG---------PAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVV--TKDGEE--IEADAVV 145 (392)
T ss_dssp TTS----------GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEE--ETTSEE--EEECEEE
T ss_pred ccCC---------CCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEE--eCCCCE--EecCEEE
Confidence 1110 00111224789999999999999999999999999999999999988866 467764 6699999
Q ss_pred EecCCcc
Q 009994 211 VCDGCFS 217 (520)
Q Consensus 211 ~AdG~~S 217 (520)
.|+|.+.
T Consensus 146 laTGtfl 152 (392)
T PF01134_consen 146 LATGTFL 152 (392)
T ss_dssp E-TTTGB
T ss_pred Eeccccc
Confidence 9999843
No 75
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.32 E-value=2.5e-11 Score=119.33 Aligned_cols=141 Identities=27% Similarity=0.381 Sum_probs=91.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchH----------HHHHhcC-----chhHHhh
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGY----------LKLVELG-----LEDCVEE 117 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~----------~~l~~lG-----l~~~l~~ 117 (520)
+.+||+||||||||+.+|..++++|.+|+|+|+.+....+.. +..+|. +.+.+.+ +...+.+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil---~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ 78 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKIL---MSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALAR 78 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeE---ecCCCCccccccccHHHHHHhCCCcchHHHHHHHh
Confidence 468999999999999999999999999999999976543321 222221 1222221 0011111
Q ss_pred c------ccceeceEEEEECCccccccCCCcCCCCCccceeec----chHHHHHHHHHHHcCCCeEEEece-EEEEEeeC
Q 009994 118 I------DAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRSFH----NGRFIQRMREKAASLPNVRLEQGT-VTSLLEEN 186 (520)
Q Consensus 118 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~ 186 (520)
+ +.....|..++.. ..|+.+. -..+.+.|.+++++. ||+++..+ |.++..++
T Consensus 79 ft~~d~i~~~e~~Gi~~~e~----------------~~Gr~Fp~sdkA~~Iv~~ll~~~~~~-gV~i~~~~~v~~v~~~~ 141 (408)
T COG2081 79 FTPEDFIDWVEGLGIALKEE----------------DLGRMFPDSDKASPIVDALLKELEAL-GVTIRTRSRVSSVEKDD 141 (408)
T ss_pred CCHHHHHHHHHhcCCeeEEc----------------cCceecCCccchHHHHHHHHHHHHHc-CcEEEecceEEeEEecC
Confidence 0 0011122222211 1222222 245889999999998 89999987 99998887
Q ss_pred CeEEEEEEEeCCCcEEEEecCeEEEecCCcch
Q 009994 187 GTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 218 (520)
Q Consensus 187 ~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~ 218 (520)
. +..+.+.+|+ +++||-+|.|+|+.|.
T Consensus 142 ~---~f~l~t~~g~--~i~~d~lilAtGG~S~ 168 (408)
T COG2081 142 S---GFRLDTSSGE--TVKCDSLILATGGKSW 168 (408)
T ss_pred c---eEEEEcCCCC--EEEccEEEEecCCcCC
Confidence 4 4667778887 4679999999998883
No 76
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.28 E-value=1.4e-09 Score=113.10 Aligned_cols=69 Identities=22% Similarity=0.282 Sum_probs=47.4
Q ss_pred cchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCc-EEEEecCeEEEecCCcch-hhhhhc
Q 009994 154 HNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQ-ELRAYAPLTIVCDGCFSN-LRRSLC 224 (520)
Q Consensus 154 ~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~-~~~~~ad~vV~AdG~~S~-vR~~l~ 224 (520)
+-..+...|.+.+++. |+++++++ |+++..+++.+. +.+.+.++. ..+++||.||.|+|.+|. +.+.++
T Consensus 195 ~~~~~~~~l~~~a~~~-G~~i~~~~~V~~i~~~~~~~~-v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~ 266 (410)
T PRK12409 195 DIHKFTTGLAAACARL-GVQFRYGQEVTSIKTDGGGVV-LTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLG 266 (410)
T ss_pred CHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEeCCEEE-EEEEcCCCCccceEecCEEEECCCcChHHHHHHhC
Confidence 4446788888888887 79999886 999987776543 333332210 224679999999999974 444444
No 77
>PLN02661 Putative thiazole synthesis
Probab=99.28 E-value=9.1e-11 Score=115.96 Aligned_cols=138 Identities=28% Similarity=0.321 Sum_probs=90.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHhhC-CCeEEEEccCCCCCCce--eeeee-----ccchHHHHHhcCchhHHhhcccce
Q 009994 51 NGSPTDVIIVGAGVAGAALAHTLGKD-GRRVHVIERDVTEPDRI--VGELL-----QPGGYLKLVELGLEDCVEEIDAQQ 122 (520)
Q Consensus 51 ~~~~~dV~IVGaG~aGl~~A~~La~~-G~~V~v~Er~~~~~~~~--~g~~l-----~~~~~~~l~~lGl~~~l~~~~~~~ 122 (520)
+..++||+|||||++|+++|+.|++. |.+|+|+||........ .+..+ +....+.|+++|+.- +.
T Consensus 89 ~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~f--d~----- 161 (357)
T PLN02661 89 TYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPY--DE----- 161 (357)
T ss_pred hcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCc--cc-----
Confidence 35578999999999999999999986 89999999976432211 11111 111223344444320 00
Q ss_pred eceEEEEECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-----
Q 009994 123 VLGYALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT----- 196 (520)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~----- 196 (520)
..+ | -...+...+...|.+.+.+.+++++++++ ++++..+++++.||.+..
T Consensus 162 ~dg-------------y----------~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~ 218 (357)
T PLN02661 162 QEN-------------Y----------VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQ 218 (357)
T ss_pred CCC-------------e----------eEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhh
Confidence 000 0 01113345667788877776799999998 999998889999988631
Q ss_pred -CCC----cEEEEecCeEEEecCCcch
Q 009994 197 -KDG----QELRAYAPLTIVCDGCFSN 218 (520)
Q Consensus 197 -~~g----~~~~~~ad~vV~AdG~~S~ 218 (520)
.++ +...++|+.||.|+|..++
T Consensus 219 ~~~~~s~~dp~~I~AkaVVlATGh~g~ 245 (357)
T PLN02661 219 NHDTQSCMDPNVMEAKVVVSSCGHDGP 245 (357)
T ss_pred ccCCCCccceeEEECCEEEEcCCCCCc
Confidence 111 3356889999999996654
No 78
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.27 E-value=7.4e-10 Score=120.25 Aligned_cols=73 Identities=22% Similarity=0.374 Sum_probs=57.5
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEee--CCeEEEEEEEeC-CCcEEEEecCeEEEecCCcch-hhhhhcC
Q 009994 152 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEE--NGTIKGVQYKTK-DGQELRAYAPLTIVCDGCFSN-LRRSLCK 225 (520)
Q Consensus 152 ~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~--~~~v~gv~v~~~-~g~~~~~~ad~vV~AdG~~S~-vR~~l~~ 225 (520)
.++..++...|.+.+++. |++++.++ |+++..+ ++++.+|++.+. +|+..+++||.||.|+|++|. +++.++.
T Consensus 228 ~vdp~rl~~al~~~A~~~-Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g~ 305 (627)
T PLN02464 228 QMNDSRLNVALACTAALA-GAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMADG 305 (627)
T ss_pred EEcHHHHHHHHHHHHHhC-CcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhccC
Confidence 457778999999999887 78888885 9998876 467888887653 455556889999999999974 7776653
No 79
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.26 E-value=1.8e-10 Score=117.00 Aligned_cols=164 Identities=29% Similarity=0.420 Sum_probs=93.8
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCc--eeeeeeccc-------hHHHHH--hcCchhHH-hhcccc--
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDR--IVGELLQPG-------GYLKLV--ELGLEDCV-EEIDAQ-- 121 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~--~~g~~l~~~-------~~~~l~--~lGl~~~l-~~~~~~-- 121 (520)
||+|||||++|+++|+.|+++|++|+|+|+....... ..+..+.+. ....+. ....+..+ ......
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGIPVG 80 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTSSCE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeeccccccccccccccccccccccccccccchhhhhccchhhhhhhcCcccc
Confidence 7999999999999999999999999999999322211 112233222 111111 11112222 111101
Q ss_pred -eeceEEEEE-CCcc-c------------------------cccCCCcCC-----CCCccceeecchHHHHHHHHHHHcC
Q 009994 122 -QVLGYALFK-DGKS-T------------------------RLSYPLEKF-----HADVSGRSFHNGRFIQRMREKAASL 169 (520)
Q Consensus 122 -~~~~~~~~~-~~~~-~------------------------~~~~~~~~~-----~~~~~~~~~~~~~l~~~L~~~~~~~ 169 (520)
...+..... +... . ...+|.... ...+.+..++...+.+.|.+.+++.
T Consensus 81 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~~~~~ 160 (358)
T PF01266_consen 81 FRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAEAQRA 160 (358)
T ss_dssp EEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHHHHHT
T ss_pred cccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHHHHHh
Confidence 011222222 1111 0 001110010 0113344577888999999999998
Q ss_pred CCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcchh-hhhhcC
Q 009994 170 PNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL-RRSLCK 225 (520)
Q Consensus 170 ~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~v-R~~l~~ 225 (520)
|++++.++ |+++..+++++.+|. +.+|+ ++||.||.|+|.+|.- .+.++.
T Consensus 161 -Gv~i~~~~~V~~i~~~~~~v~gv~--~~~g~---i~ad~vV~a~G~~s~~l~~~~~~ 212 (358)
T PF01266_consen 161 -GVEIRTGTEVTSIDVDGGRVTGVR--TSDGE---IRADRVVLAAGAWSPQLLPLLGL 212 (358)
T ss_dssp -T-EEEESEEEEEEEEETTEEEEEE--ETTEE---EEECEEEE--GGGHHHHHHTTTT
T ss_pred -hhhccccccccchhhccccccccc--ccccc---cccceeEecccccceeeeecccc
Confidence 89999995 999999999755444 66664 6699999999998754 344443
No 80
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.23 E-value=4.1e-12 Score=132.26 Aligned_cols=153 Identities=25% Similarity=0.223 Sum_probs=34.7
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeee---eeccchHHHHHhcCchhHHhhcccceeceEEEEECC
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGE---LLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDG 132 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~---~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 132 (520)
|||||||||+|+++|+.+++.|.+|+|+||........... .+..........-|+..++...... ..+.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~-~~~~------ 73 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRA-RGGY------ 73 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhh-hccc------
Confidence 89999999999999999999999999999987543221111 1111110001112343333321111 0000
Q ss_pred ccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEE
Q 009994 133 KSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIV 211 (520)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~ 211 (520)
..+ ..........+++..+...|.+.+.+. |+++++++ |+++..+++++.+|++.+.+| ..+++|+++|+
T Consensus 74 -----~~~--~~~~~~~~~~~~~~~~~~~l~~~l~e~-gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g-~~~i~A~~~ID 144 (428)
T PF12831_consen 74 -----PQE--DRYGWVSNVPFDPEVFKAVLDEMLAEA-GVEVLLGTRVVDVIRDGGRITGVIVETKSG-RKEIRAKVFID 144 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----ccc--ccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc-ccccccccccc
Confidence 000 000000012355566777777777664 89999998 999999999999999988776 56799999999
Q ss_pred ecCCcchhhhhhcC
Q 009994 212 CDGCFSNLRRSLCK 225 (520)
Q Consensus 212 AdG~~S~vR~~l~~ 225 (520)
|+|- +.+-...|.
T Consensus 145 aTG~-g~l~~~aG~ 157 (428)
T PF12831_consen 145 ATGD-GDLAALAGA 157 (428)
T ss_dssp --------------
T ss_pred cccc-ccccccccc
Confidence 9994 445555554
No 81
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.22 E-value=1.6e-10 Score=118.33 Aligned_cols=144 Identities=28% Similarity=0.326 Sum_probs=76.8
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCce----------------eeeeecc------chHHHHHhcCch
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRI----------------VGELLQP------GGYLKLVELGLE 112 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~----------------~g~~l~~------~~~~~l~~lGl~ 112 (520)
|||+|||||||||+||+.|++.|.+|+|+||......+. ....... -...+|++.+..
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 799999999999999999999999999999997542211 0011111 112345555444
Q ss_pred hHHhhcccceeceEEEEECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEE
Q 009994 113 DCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKG 191 (520)
Q Consensus 113 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~g 191 (520)
|.+.-.. ..|......... ..||.. -.-..+.+.|++.+++. +++++.++ |.++..+++++..
T Consensus 81 d~~~ff~---~~Gv~~~~~~~g--r~fP~s----------~~a~~Vv~~L~~~l~~~-gv~i~~~~~V~~i~~~~~~~f~ 144 (409)
T PF03486_consen 81 DLIAFFE---ELGVPTKIEEDG--RVFPKS----------DKASSVVDALLEELKRL-GVEIHFNTRVKSIEKKEDGVFG 144 (409)
T ss_dssp HHHHHHH---HTT--EEE-STT--EEEETT------------HHHHHHHHHHHHHHH-T-EEE-S--EEEEEEETTEEEE
T ss_pred HHHHHHH---hcCCeEEEcCCC--EECCCC----------CcHHHHHHHHHHHHHHc-CCEEEeCCEeeeeeecCCceeE
Confidence 3332211 122222111000 111211 11246888999999887 89999998 9999988887544
Q ss_pred EEEEeCCCcEEEEecCeEEEecCCcch
Q 009994 192 VQYKTKDGQELRAYAPLTIVCDGCFSN 218 (520)
Q Consensus 192 v~v~~~~g~~~~~~ad~vV~AdG~~S~ 218 (520)
|. .++++ ++.||.||.|+|..|.
T Consensus 145 v~--~~~~~--~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 145 VK--TKNGG--EYEADAVILATGGKSY 167 (409)
T ss_dssp EE--ETTTE--EEEESEEEE----SSS
T ss_pred ee--ccCcc--cccCCEEEEecCCCCc
Confidence 44 44444 4669999999998773
No 82
>PRK07121 hypothetical protein; Validated
Probab=99.21 E-value=3.4e-10 Score=120.33 Aligned_cols=63 Identities=24% Similarity=0.421 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEeCCCcEEEEec-CeEEEecCCcchhhh
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEE-NGTIKGVQYKTKDGQELRAYA-PLTIVCDGCFSNLRR 221 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~gv~v~~~~g~~~~~~a-d~vV~AdG~~S~vR~ 221 (520)
.+.+.|.+.+++. +++++.++ ++++..+ ++++.+|.+.. +++..+++| +.||.|+|.++.-++
T Consensus 178 ~~~~~L~~~~~~~-gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-~~~~~~i~a~k~VVlAtGg~~~N~e 243 (492)
T PRK07121 178 MLMDPLAKRAAAL-GVQIRYDTRATRLIVDDDGRVVGVEARR-YGETVAIRARKGVVLAAGGFAMNRE 243 (492)
T ss_pred HHHHHHHHHHHhC-CCEEEeCCEEEEEEECCCCCEEEEEEEe-CCcEEEEEeCCEEEECCCCcCcCHH
Confidence 5788888888876 79998887 9999876 46888998864 455567889 999999999986433
No 83
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.21 E-value=2.7e-10 Score=122.19 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=57.5
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCeEEEecCCcch-hhhhhcC
Q 009994 152 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSN-LRRSLCK 225 (520)
Q Consensus 152 ~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~-~~g~~~~~~ad~vV~AdG~~S~-vR~~l~~ 225 (520)
.++..++...+...+.++ |+++.+++ |+++..+++++++|++.+ .+|+..+++|+.||.|+|.+|. +.+..+.
T Consensus 145 ~vdp~rl~~al~~~A~~~-Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~ 220 (546)
T PRK11101 145 TVDPFRLTAANMLDAKEH-GAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADL 220 (546)
T ss_pred EECHHHHHHHHHHHHHhC-CCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCC
Confidence 567778888888888887 78888876 999988888888888865 3555567889999999999983 5554443
No 84
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.20 E-value=3e-09 Score=117.10 Aligned_cols=60 Identities=18% Similarity=0.244 Sum_probs=46.3
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcch
Q 009994 152 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 218 (520)
Q Consensus 152 ~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~ 218 (520)
.++...+.+.|.+.+.+ |+++.+++ |+++..+++. +.+.+.+|.. ++||.||.|+|.+|.
T Consensus 404 ~v~p~~l~~aL~~~a~~--Gv~i~~~~~V~~i~~~~~~---~~v~t~~g~~--~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 404 WLCPAELCRALLALAGQ--QLTIHFGHEVARLEREDDG---WQLDFAGGTL--ASAPVVVLANGHDAA 464 (662)
T ss_pred eeCHHHHHHHHHHhccc--CcEEEeCCEeeEEEEeCCE---EEEEECCCcE--EECCEEEECCCCCcc
Confidence 45667899999998877 68888876 9999877764 3455666653 459999999999984
No 85
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.19 E-value=4e-09 Score=109.90 Aligned_cols=60 Identities=37% Similarity=0.430 Sum_probs=45.2
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcch
Q 009994 153 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 218 (520)
Q Consensus 153 ~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~ 218 (520)
++...+.+.|.+.+++. |+++++++ |++++.+++++.+|+ +.++ +++||.||.|+|.+|.
T Consensus 198 ~~p~~~~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~v~--t~~~---~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 198 GDCQLFTQRLAAMAEQL-GVKFRFNTPVDGLLVEGGRITGVQ--TGGG---VITADAYVVALGSYST 258 (416)
T ss_pred CCHHHHHHHHHHHHHHC-CCEEEcCCEEEEEEecCCEEEEEE--eCCc---EEeCCEEEECCCcchH
Confidence 44557888888888876 78998876 999988777654443 4444 3669999999999984
No 86
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.18 E-value=1.7e-10 Score=120.24 Aligned_cols=63 Identities=29% Similarity=0.452 Sum_probs=51.9
Q ss_pred chHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCeEEEecCCcch
Q 009994 155 NGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSN 218 (520)
Q Consensus 155 ~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~-~~g~~~~~~ad~vV~AdG~~S~ 218 (520)
-..+...|.+.+++. +++++.++ ++++..++++|+||.+.. .+|+.++++|+.||.|+|.++.
T Consensus 140 g~~~~~~l~~~~~~~-gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 140 GKALIEALAKAAEEA-GVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHT-TEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHHhhc-CeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 346888899999998 69999998 999999999999999984 6778788999999999999995
No 87
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.18 E-value=4.2e-09 Score=108.15 Aligned_cols=60 Identities=20% Similarity=0.163 Sum_probs=45.3
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcch
Q 009994 152 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 218 (520)
Q Consensus 152 ~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~ 218 (520)
.++..++...+.+.+.+. +++++.++ |+++..+++. +.+.+.+| +++||.||.|+|.++.
T Consensus 145 ~v~p~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~---~~v~~~~g---~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 145 FLRPELAIKAHLRLAREA-GAELLFNEPVTAIEADGDG---VTVTTADG---TYEAKKLVVSAGAWVK 205 (376)
T ss_pred EEcHHHHHHHHHHHHHHC-CCEEECCCEEEEEEeeCCe---EEEEeCCC---EEEeeEEEEecCcchh
Confidence 355567777787777776 89998876 9999887663 44556666 3669999999999864
No 88
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.18 E-value=4.1e-09 Score=109.46 Aligned_cols=112 Identities=13% Similarity=0.037 Sum_probs=61.6
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEeCCCcEEEEecCeEEEecCCc-chhhhhhcCCCC
Q 009994 152 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEE-NGTIKGVQYKTKDGQELRAYAPLTIVCDGCF-SNLRRSLCKPKV 228 (520)
Q Consensus 152 ~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~-S~vR~~l~~~~~ 228 (520)
.++...+...|.+.+.+. |+++..++ |+++..+ ++.+.+ +++.+|+ ++|+.||.|.|++ +.+++.++...+
T Consensus 179 ~v~p~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~~~--v~t~~g~---i~a~~vVvaagg~~~~l~~~~g~~~~ 252 (407)
T TIGR01373 179 TARHDAVAWGYARGADRR-GVDIIQNCEVTGFIRRDGGRVIG--VETTRGF---IGAKKVGVAVAGHSSVVAAMAGFRLP 252 (407)
T ss_pred cCCHHHHHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCCcEEE--EEeCCce---EECCEEEECCChhhHHHHHHcCCCCC
Confidence 345556777788888887 78998885 9998754 454433 3445563 5688765555545 577777765433
Q ss_pred CCcccceeeEEeccCCCCCCceEEEecCCCcEEEEecCCCeEEE
Q 009994 229 DVPSCFVGLVLENCQLPFANHGHVILADPSPILFYPISSTEVRC 272 (520)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 272 (520)
....... +.... ..+... ..++..++..+++.|..+++..+
T Consensus 253 ~~~~~~~-~~~~~-~~~~~~-~~~~~~~~~~~y~~p~~~g~~~i 293 (407)
T TIGR01373 253 IESHPLQ-ALVSE-PLKPII-DTVVMSNAVHFYVSQSDKGELVI 293 (407)
T ss_pred cCcccce-EEEec-CCCCCc-CCeEEeCCCceEEEEcCCceEEE
Confidence 2222222 22221 221111 11233344456677876664433
No 89
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.17 E-value=2.6e-10 Score=119.58 Aligned_cols=164 Identities=24% Similarity=0.317 Sum_probs=93.5
Q ss_pred cEEEECCCHHHHHHHHHHhhCC-CeEEEEccCCCCCCc--eeeeeeccchHHHHHhcCchhHHhhcccc-----------
Q 009994 56 DVIIVGAGVAGAALAHTLGKDG-RRVHVIERDVTEPDR--IVGELLQPGGYLKLVELGLEDCVEEIDAQ----------- 121 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G-~~V~v~Er~~~~~~~--~~g~~l~~~~~~~l~~lGl~~~l~~~~~~----------- 121 (520)
||||||||++|+++|+.++++| .+|+|+||.+..... ..+..+........+..|+.+..+.....
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 8999999999999999999999 999999998643221 11222322222222333332211110000
Q ss_pred ---------eeceEEEEECCccccccC--CCcC--CC--CCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEee
Q 009994 122 ---------QVLGYALFKDGKSTRLSY--PLEK--FH--ADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEE 185 (520)
Q Consensus 122 ---------~~~~~~~~~~~~~~~~~~--~~~~--~~--~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~ 185 (520)
....+.++..+-...... .... .. ..+......-..+.+.|.+.+++. +++++.++ ++++..+
T Consensus 81 ~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~-gv~i~~~~~v~~l~~~ 159 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKE-GIDTRLNSKVEDLIQD 159 (439)
T ss_pred HHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHc-CCEEEeCCEeeEeEEC
Confidence 000000000000000000 0000 00 000000012245788888888887 79999887 9999875
Q ss_pred -CCeEEEEEEEeCCCcEEEEecCeEEEecCCcchhh
Q 009994 186 -NGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLR 220 (520)
Q Consensus 186 -~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~vR 220 (520)
++++++|.+...+++...+.++.||.|+|.++.-.
T Consensus 160 ~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~ 195 (439)
T TIGR01813 160 DQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNK 195 (439)
T ss_pred CCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCH
Confidence 56788898887677666678999999999998743
No 90
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.16 E-value=2.7e-09 Score=110.26 Aligned_cols=69 Identities=23% Similarity=0.213 Sum_probs=52.4
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcc-hhhhhhcCC
Q 009994 151 RSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFS-NLRRSLCKP 226 (520)
Q Consensus 151 ~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S-~vR~~l~~~ 226 (520)
..++...+.+.|.+.+++. |++++.++ |+++..+++. +.+.+.+| +++||.||.|+|.+| .+.+.++.+
T Consensus 144 g~vd~~~l~~aL~~~~~~~-Gv~i~~~~~V~~i~~~~~~---~~V~~~~g---~i~ad~vV~A~G~~s~~l~~~~g~~ 214 (393)
T PRK11728 144 GIVDYRAVAEAMAELIQAR-GGEIRLGAEVTALDEHANG---VVVRTTQG---EYEARTLINCAGLMSDRLAKMAGLE 214 (393)
T ss_pred eEECHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEecCCe---EEEEECCC---EEEeCEEEECCCcchHHHHHHhCCC
Confidence 4567788999999999887 78888886 9888876664 34455555 367999999999998 466666653
No 91
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.14 E-value=7.6e-10 Score=116.97 Aligned_cols=67 Identities=22% Similarity=0.327 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcchhhhhh
Q 009994 156 GRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLRRSL 223 (520)
Q Consensus 156 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~vR~~l 223 (520)
..+...|.+.+++. +++++.++ |+++..+++++++|.+...+|+..+++|+.||.|+|.++.-++.+
T Consensus 131 ~~l~~~l~~~~~~~-gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~ 198 (466)
T PRK08274 131 KALVNALYRSAERL-GVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNREWL 198 (466)
T ss_pred HHHHHHHHHHHHHC-CCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCCCCHHHH
Confidence 35777888888877 79999886 999988888888888865667666788999999999987654443
No 92
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.14 E-value=4.5e-10 Score=121.18 Aligned_cols=64 Identities=13% Similarity=0.296 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCeEEEecCCcchhh
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNLR 220 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~-~~g~~~~~~ad~vV~AdG~~S~vR 220 (520)
.+...|.+.+.+.++++++..+ ++++..+++++.||.+.+ .+|+...++|+.||.|||++|.+-
T Consensus 134 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~ 199 (582)
T PRK09231 134 HMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVY 199 (582)
T ss_pred HHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCC
Confidence 4777888888777789998887 999998889999988754 577767789999999999999763
No 93
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.13 E-value=1e-09 Score=116.37 Aligned_cols=65 Identities=25% Similarity=0.331 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcchhhh
Q 009994 156 GRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLRR 221 (520)
Q Consensus 156 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~vR~ 221 (520)
..+...|.+.+++.+++++++++ ++++..+++++.||.+... ++...++|+.||.|+|++|.+..
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~-~~~~~i~A~~VVlAtGG~~~~~~ 193 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNR-ETVETCHADAVVLATGGAGKLYQ 193 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEEC-CcEEEEEcCEEEECCCcccCCCC
Confidence 35788899988876689999997 9999887788888887665 44456889999999999998654
No 94
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.11 E-value=2.1e-09 Score=108.53 Aligned_cols=174 Identities=22% Similarity=0.326 Sum_probs=105.5
Q ss_pred CCCCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCC-ceeeeeeccchHHHHHhc--Cch--------hHHhh
Q 009994 49 GKNGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD-RIVGELLQPGGYLKLVEL--GLE--------DCVEE 117 (520)
Q Consensus 49 ~~~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~-~~~g~~l~~~~~~~l~~l--Gl~--------~~l~~ 117 (520)
+..++++||+|||||.+|.-+|+..+-+|.+|.++|+++..+. .+...-|-.+|++.|++. .+. +.+.+
T Consensus 62 l~~~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLekAi~~lD~~qyrlV~eaL~E 141 (680)
T KOG0042|consen 62 LKSTHEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEKAISNLDYEQYRLVKEALNE 141 (680)
T ss_pred hhcCCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3457789999999999999999999999999999999875443 234445677888877642 211 22211
Q ss_pred ------cccc---------e-------------eceEEEEECCcccc-----------ccCCCcCCCCCccce------e
Q 009994 118 ------IDAQ---------Q-------------VLGYALFKDGKSTR-----------LSYPLEKFHADVSGR------S 152 (520)
Q Consensus 118 ------~~~~---------~-------------~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~------~ 152 (520)
+... + .+-|.+....+... -.+|.-.. ..-.|. .
T Consensus 142 R~~lle~APhLs~~lPImlPvy~wwQvpYyw~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fPmL~~-~~L~Ga~VYyDGQ 220 (680)
T KOG0042|consen 142 RANLLEIAPHLSQPLPIMLPVYKWWQVPYYWVGLKIYDLVAGSKNLKSSYFLSKKEALEIFPMLRK-DNLKGAMVYYDGQ 220 (680)
T ss_pred HHHHhhcCccccCCcceeeehhhhhhhhheeecceeeeeeccccccccceeecHHHHHHhCccccc-cCceeEEEEecCC
Confidence 0000 0 01111111111111 11221110 011111 2
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeC-CeEEEEEEEe-CCCcEEEEecCeEEEecCCcch-hhhhhc
Q 009994 153 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEEN-GTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSN-LRRSLC 224 (520)
Q Consensus 153 ~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~-~~v~gv~v~~-~~g~~~~~~ad~vV~AdG~~S~-vR~~l~ 224 (520)
.+-.++.-.+.=.+.++ |.++.+.. |+++..++ +++.|+.+++ .+|++++++|+.||.|+|.+|- +|+.-.
T Consensus 221 ~nDaRmnl~vAlTA~r~-GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~Mdd 295 (680)
T KOG0042|consen 221 HNDARMNLAVALTAARN-GATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKMDD 295 (680)
T ss_pred CchHHHHHHHHHHHHhc-chhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhhcc
Confidence 23345555555555555 56665554 88888665 5588999887 5799999999999999999984 555443
No 95
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.10 E-value=2.7e-09 Score=114.50 Aligned_cols=63 Identities=14% Similarity=0.228 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEec-CeEEEecCCcchhhhh
Q 009994 158 FIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYA-PLTIVCDGCFSNLRRS 222 (520)
Q Consensus 158 l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~a-d~vV~AdG~~S~vR~~ 222 (520)
+...|.+.+++. +++++.++ ++++..++++|+||.+.. +|.++.+.| +-||.|+|.++...+.
T Consensus 219 l~~~L~~~~~~~-Gv~i~~~t~v~~Li~~~g~V~GV~~~~-~g~~~~i~a~kaVILAtGGf~~n~em 283 (564)
T PRK12845 219 LAAGLFAGVLRA-GIPIWTETSLVRLTDDGGRVTGAVVDH-RGREVTVTARRGVVLAAGGFDHDMEM 283 (564)
T ss_pred HHHHHHHHHHHC-CCEEEecCEeeEEEecCCEEEEEEEEE-CCcEEEEEcCCEEEEecCCccccHHH
Confidence 455677778776 89999987 999988778999998765 455556666 5899999999976433
No 96
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.10 E-value=2e-09 Score=116.45 Aligned_cols=65 Identities=28% Similarity=0.324 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCeEEEecCCcchhhh
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNLRR 221 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~-~~g~~~~~~ad~vV~AdG~~S~vR~ 221 (520)
.+.+.|.+.+.+.++++++.++ ++++..+++++.||.+.+ .+|+...++|+.||.|+|+.+.+..
T Consensus 138 ~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~ 204 (577)
T PRK06069 138 YIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRLYG 204 (577)
T ss_pred HHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhcccCC
Confidence 3677888887765589999887 999988888899988754 4676667899999999999986543
No 97
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.10 E-value=1.9e-09 Score=113.63 Aligned_cols=77 Identities=17% Similarity=0.171 Sum_probs=56.2
Q ss_pred ceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEE-eCCCcEEEEecCeEEEecCCcc-hhhhhhcCC
Q 009994 150 GRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYK-TKDGQELRAYAPLTIVCDGCFS-NLRRSLCKP 226 (520)
Q Consensus 150 ~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~-~~~g~~~~~~ad~vV~AdG~~S-~vR~~l~~~ 226 (520)
+..++...+.+.|.+.+++. |+++++++ |+++.+++++.+.+++. ..+|+..+++||+||.|.|.+| .+++.++++
T Consensus 172 ~g~Vdp~~l~~aL~~~a~~~-Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~ 250 (483)
T TIGR01320 172 GTDVDFGALTKQLLGYLVQN-GTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIP 250 (483)
T ss_pred CEEECHHHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCC
Confidence 34577788999999999887 79999987 99998765432224433 2445444578999988888876 678888876
Q ss_pred C
Q 009994 227 K 227 (520)
Q Consensus 227 ~ 227 (520)
.
T Consensus 251 ~ 251 (483)
T TIGR01320 251 E 251 (483)
T ss_pred c
Confidence 3
No 98
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.10 E-value=1.4e-09 Score=114.70 Aligned_cols=77 Identities=18% Similarity=0.205 Sum_probs=56.0
Q ss_pred ceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEE-eCCCcEEEEecCeEEEecCCcc-hhhhhhcCC
Q 009994 150 GRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYK-TKDGQELRAYAPLTIVCDGCFS-NLRRSLCKP 226 (520)
Q Consensus 150 ~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~-~~~g~~~~~~ad~vV~AdG~~S-~vR~~l~~~ 226 (520)
+..++...+.+.|.+.+++.+++++++++ |+++..++++.+.|++. ..+|+..+++|++||.|.|++| .+++.++++
T Consensus 177 ~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~ 256 (494)
T PRK05257 177 GTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIP 256 (494)
T ss_pred ceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence 44677888999999999888668999887 99998755532224443 2445434578999998888886 677777765
No 99
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.09 E-value=8.3e-10 Score=118.85 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeC-CCcEEEEecCeEEEecCCcchh
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTK-DGQELRAYAPLTIVCDGCFSNL 219 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~-~g~~~~~~ad~vV~AdG~~S~v 219 (520)
.+...|.+.+.+. ++++++++ ++++..+++++.||.+.+. +|+...++|+.||.|+|+++.+
T Consensus 137 ~i~~~L~~~~~~~-gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l 200 (566)
T PRK06452 137 ALLHTLFERTSGL-NVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGML 200 (566)
T ss_pred HHHHHHHHHHHhC-CCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccccc
Confidence 4677788888776 89999887 9999988899999988764 5666678999999999999853
No 100
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.09 E-value=5e-09 Score=100.28 Aligned_cols=173 Identities=24% Similarity=0.233 Sum_probs=98.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeec----cchHH------HHHhcCchhHHhhcccc
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQ----PGGYL------KLVELGLEDCVEEIDAQ 121 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~----~~~~~------~l~~lGl~~~l~~~~~~ 121 (520)
....||+|||||+-|+++|+.|+++|.+++++|+-+-+..++.....+ +.=.+ .++.+..|..+......
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~ 84 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGV 84 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhce
Confidence 456899999999999999999999999999999986554433222211 11100 01111111111110000
Q ss_pred -ee--ceEEEEEC------------------------CccccccCCC-cCCC------CCccceeecchHHHHHHHHHHH
Q 009994 122 -QV--LGYALFKD------------------------GKSTRLSYPL-EKFH------ADVSGRSFHNGRFIQRMREKAA 167 (520)
Q Consensus 122 -~~--~~~~~~~~------------------------~~~~~~~~~~-~~~~------~~~~~~~~~~~~l~~~L~~~~~ 167 (520)
-. .+..+..+ +++..-.||. .... ..+.|-.+....-...|...++
T Consensus 85 ~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~ 164 (399)
T KOG2820|consen 85 KLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKAR 164 (399)
T ss_pred eecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHHH
Confidence 00 01111111 1112223341 1111 1223345666677888999999
Q ss_pred cCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCc--chhhhhhcCCC
Q 009994 168 SLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCF--SNLRRSLCKPK 227 (520)
Q Consensus 168 ~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~--S~vR~~l~~~~ 227 (520)
+. |+.++.++ |+.....+....+|.|.+.+|..+ .|+-+|.+.|++ +-++..+++..
T Consensus 165 ~~-G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y--~akkiI~t~GaWi~klL~~~~~~~~ 224 (399)
T KOG2820|consen 165 EL-GVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIY--HAKKIIFTVGAWINKLLPTSLAIGF 224 (399)
T ss_pred Hc-CeEEecCcceeeEeeccCCCceeEEEeccCCee--ecceEEEEecHHHHhhcCcccccCC
Confidence 88 78999997 666553333334677888888854 599999999988 33454455443
No 101
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.09 E-value=7.2e-10 Score=119.21 Aligned_cols=66 Identities=18% Similarity=0.228 Sum_probs=49.0
Q ss_pred HHHHHHHHHH---cCCCeEEEece-EEEEEeeCCeEEEEEEEe--C------------CCcEEEEecCeEEEecCCcchh
Q 009994 158 FIQRMREKAA---SLPNVRLEQGT-VTSLLEENGTIKGVQYKT--K------------DGQELRAYAPLTIVCDGCFSNL 219 (520)
Q Consensus 158 l~~~L~~~~~---~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~--~------------~g~~~~~~ad~vV~AdG~~S~v 219 (520)
+...|.+.++ +.+++++++++ +++|++++++|+||.+.. . +++.++++|+-||.|+|.++..
T Consensus 150 ~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~n 229 (549)
T PRK12834 150 VVEPFERRVREAAARGLVRFRFRHRVDELVVTDGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGGN 229 (549)
T ss_pred HHHHHHHHHHHHHHhCCceEEecCEeeEEEEeCCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcccC
Confidence 5566665554 34569999997 999998889999998742 1 1234578899999999999977
Q ss_pred hhhh
Q 009994 220 RRSL 223 (520)
Q Consensus 220 R~~l 223 (520)
++.+
T Consensus 230 ~em~ 233 (549)
T PRK12834 230 HELV 233 (549)
T ss_pred HHHH
Confidence 5544
No 102
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.09 E-value=1.7e-09 Score=116.26 Aligned_cols=63 Identities=22% Similarity=0.273 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecC-eEEEecCCcchhhhh
Q 009994 158 FIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAP-LTIVCDGCFSNLRRS 222 (520)
Q Consensus 158 l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad-~vV~AdG~~S~vR~~ 222 (520)
+...|++.+++. +++++.++ ++++..++++|+||.+.. +|+..+++|+ -||.|+|+++.-++.
T Consensus 210 ~~~~L~~~~~~~-gv~v~~~t~v~~l~~~~g~v~Gv~~~~-~g~~~~i~A~~~VIlAtGG~~~n~~m 274 (557)
T PRK07843 210 LAAGLRIGLQRA-GVPVLLNTPLTDLYVEDGRVTGVHAAE-SGEPQLIRARRGVILASGGFEHNEQM 274 (557)
T ss_pred HHHHHHHHHHcC-CCEEEeCCEEEEEEEeCCEEEEEEEEe-CCcEEEEEeceeEEEccCCcCcCHHH
Confidence 566677777776 89999987 999998888999998864 5666778896 699999998874433
No 103
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.08 E-value=1.8e-09 Score=116.26 Aligned_cols=63 Identities=16% Similarity=0.297 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCeEEEecCCcchh
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNL 219 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~-~~g~~~~~~ad~vV~AdG~~S~v 219 (520)
.+...|.+.+.+.+++++..++ ++++..+++++.||.+.+ .+|+...++|+.||.|||++|.+
T Consensus 133 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 133 HMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 4788888888776789998887 999998889999998754 57777788999999999999964
No 104
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.07 E-value=2.3e-09 Score=113.27 Aligned_cols=152 Identities=24% Similarity=0.348 Sum_probs=93.8
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCC-ceeee---eeccc-hHHHHHhcC--chhHHhhcccceeceEE
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD-RIVGE---LLQPG-GYLKLVELG--LEDCVEEIDAQQVLGYA 127 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~-~~~g~---~l~~~-~~~~l~~lG--l~~~l~~~~~~~~~~~~ 127 (520)
|||+|||||++|+.+|..+++.|.+|+|+|++..... ..+.- .+..+ -.+-++.+| +.+..+.. ...+.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~----~i~~r 76 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKA----GLQFR 76 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhh----ceehe
Confidence 6999999999999999999999999999999743211 11110 11111 112233333 11111110 01111
Q ss_pred EEECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEee-CCeEEEEEEEeCCCcEEEEec
Q 009994 128 LFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEE-NGTIKGVQYKTKDGQELRAYA 206 (520)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~-~~~v~gv~v~~~~g~~~~~~a 206 (520)
..+..+. + ........+++..+...+.+.+++.+++++..++|+++..+ ++++.+|.. .+|. .++|
T Consensus 77 ~ln~skg-----p----AV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t--~~G~--~I~A 143 (617)
T TIGR00136 77 VLNSSKG-----P----AVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVT--QDGL--KFRA 143 (617)
T ss_pred ecccCCC-----C----cccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEE--CCCC--EEEC
Confidence 1111000 0 00111236788889999999999999999999998888765 667766664 5565 4679
Q ss_pred CeEEEecCCcchhhhhh
Q 009994 207 PLTIVCDGCFSNLRRSL 223 (520)
Q Consensus 207 d~vV~AdG~~S~vR~~l 223 (520)
+.||.|+|.++.=+-.+
T Consensus 144 d~VILATGtfL~g~ihi 160 (617)
T TIGR00136 144 KAVIITTGTFLRGKIHI 160 (617)
T ss_pred CEEEEccCcccCCCEEe
Confidence 99999999997533333
No 105
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.06 E-value=1.4e-09 Score=118.37 Aligned_cols=60 Identities=20% Similarity=0.330 Sum_probs=49.3
Q ss_pred HHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeC-CCcEEEEecCeEEEecCCcchh
Q 009994 159 IQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTK-DGQELRAYAPLTIVCDGCFSNL 219 (520)
Q Consensus 159 ~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~-~g~~~~~~ad~vV~AdG~~S~v 219 (520)
.+.|.+.+++. ++++++++ ++++..+++++.||.+.+. +|+...+.|+.||.|+|+++.+
T Consensus 173 ~~~L~~~~~~~-gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 173 YQALSRQIAAG-TVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGNV 234 (640)
T ss_pred HHHHHHHHHhc-CCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcccC
Confidence 35666677664 89999998 9999988889999998764 6776778999999999999864
No 106
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.06 E-value=1.5e-09 Score=117.44 Aligned_cols=64 Identities=17% Similarity=0.343 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCeEEEecCCcchhhh
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNLRR 221 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~-~~g~~~~~~ad~vV~AdG~~S~vR~ 221 (520)
.+...|.+.+.+. ++++++++ ++++..+++++.||.+.+ .+|+...++|+.||.|+|++|.+..
T Consensus 130 ~i~~~L~~~~~~~-gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~~ 195 (566)
T TIGR01812 130 ALLHTLYEQCLKL-GVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIYK 195 (566)
T ss_pred HHHHHHHHHHHHc-CCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcccCCCC
Confidence 4677788888777 89999887 999998888999988765 4676667899999999999997654
No 107
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.05 E-value=7.1e-09 Score=111.45 Aligned_cols=63 Identities=32% Similarity=0.401 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecC-eEEEecCCcchhhh
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAP-LTIVCDGCFSNLRR 221 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad-~vV~AdG~~S~vR~ 221 (520)
.+...|.+.+++. +++++.++ +++++.++++|+||.+.. +|+.+++.|+ -||.|+|.++.-.+
T Consensus 209 ~l~~~l~~~~~~~-gv~i~~~~~v~~Li~~~g~v~Gv~~~~-~g~~~~i~A~~aVIlAtGG~~~N~e 273 (557)
T PRK12844 209 ALIGRMLEAALAA-GVPLWTNTPLTELIVEDGRVVGVVVVR-DGREVLIRARRGVLLASGGFGHNAE 273 (557)
T ss_pred HHHHHHHHHHHhC-CCEEEeCCEEEEEEEeCCEEEEEEEEE-CCeEEEEEecceEEEecCCccCCHH
Confidence 3566777888776 89999987 999998889999998864 5666778894 79999999987433
No 108
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.05 E-value=5e-09 Score=109.81 Aligned_cols=78 Identities=19% Similarity=0.283 Sum_probs=56.5
Q ss_pred cceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEE-eCCCcEEEEecCeEEEecCCcc-hhhhhhc
Q 009994 149 SGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEE-NGTIKGVQYK-TKDGQELRAYAPLTIVCDGCFS-NLRRSLC 224 (520)
Q Consensus 149 ~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~gv~v~-~~~g~~~~~~ad~vV~AdG~~S-~vR~~l~ 224 (520)
.+..++...+.+.|.+.+.+.+++++++++ |+++.++ ++.+. +.++ ..+|+..+++||+||.|.|++| .+.+.+|
T Consensus 177 ~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~-v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~G 255 (497)
T PRK13339 177 EGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWE-VTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSG 255 (497)
T ss_pred CceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEE-EEEEecCCCceEEEEcCEEEECCCcchHHHHHHcC
Confidence 345678888999999998766689999887 9999876 55433 4443 3344333578999999999997 5777777
Q ss_pred CCC
Q 009994 225 KPK 227 (520)
Q Consensus 225 ~~~ 227 (520)
++.
T Consensus 256 i~~ 258 (497)
T PRK13339 256 IPE 258 (497)
T ss_pred CCc
Confidence 653
No 109
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.05 E-value=1.1e-09 Score=118.81 Aligned_cols=158 Identities=19% Similarity=0.221 Sum_probs=91.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhC--CCeEEEEccCCCCCCceeee---eec----cc-hHH-HHH---hc--Cchh--
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKD--GRRVHVIERDVTEPDRIVGE---LLQ----PG-GYL-KLV---EL--GLED-- 113 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~--G~~V~v~Er~~~~~~~~~g~---~l~----~~-~~~-~l~---~l--Gl~~-- 113 (520)
+.++||+|||||.|||++|+.+++. |.+|+|+||.........+. .+. .. ..+ .++ +. |+.+
T Consensus 9 ~~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~ 88 (608)
T PRK06854 9 EVDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVRED 88 (608)
T ss_pred eeEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHH
Confidence 3468999999999999999999998 99999999986422111000 011 00 111 000 00 1100
Q ss_pred HHhh--------cccceeceEEEEEC--CccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEE
Q 009994 114 CVEE--------IDAQQVLGYALFKD--GKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSL 182 (520)
Q Consensus 114 ~l~~--------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~ 182 (520)
.+.. +..-...|+.+... |.. ++ .......+.-..+...|.+.+++.++++++.++ ++++
T Consensus 89 lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~----~~-----~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~L 159 (608)
T PRK06854 89 LVYDIARHVDSVVHLFEEWGLPIWKDENGKY----VR-----RGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDL 159 (608)
T ss_pred HHHHHHHhHHHHHHHHHHcCCeeeecCCCCc----cc-----cCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEE
Confidence 0000 00001112222111 110 00 000000122335777888888877669999987 9999
Q ss_pred EeeCCeEEEEEEE-eCCCcEEEEecCeEEEecCCcch
Q 009994 183 LEENGTIKGVQYK-TKDGQELRAYAPLTIVCDGCFSN 218 (520)
Q Consensus 183 ~~~~~~v~gv~v~-~~~g~~~~~~ad~vV~AdG~~S~ 218 (520)
..+++++.||.+. ..+|+...++|+.||.|+|+++.
T Consensus 160 i~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 160 LVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred EEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence 8777888888764 35666667899999999999874
No 110
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.04 E-value=2.2e-09 Score=115.90 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEE-eCCCcEEEEecCeEEEecCCcchh
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYK-TKDGQELRAYAPLTIVCDGCFSNL 219 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~-~~~g~~~~~~ad~vV~AdG~~S~v 219 (520)
.+...|.+.+++. +++++.++ ++++..+++++.|+.+. ..+|+...++|+.||.|+|+++.+
T Consensus 136 ~i~~~L~~~~~~~-gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 136 AILHELVNNLRRY-GVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred HHHHHHHHHHhhC-CCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence 4778888888775 89999887 99998888888888764 356766678999999999999865
No 111
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.04 E-value=2.6e-09 Score=113.82 Aligned_cols=63 Identities=27% Similarity=0.415 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecC-eEEEecCCcchhh
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAP-LTIVCDGCFSNLR 220 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad-~vV~AdG~~S~vR 220 (520)
.+...|.+.+.+.++++++.++ ++++..++++|+||.+.. +|+..+++|+ -||.|+|.++..+
T Consensus 174 ~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~-~g~~~~i~A~k~VIlAtGG~~~n~ 238 (513)
T PRK12837 174 ALIGRFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVER-GGERRRVRARRGVLLAAGGFEQND 238 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEE-CCcEEEEEeCceEEEeCCCccCCH
Confidence 3566666666666689999987 999998888999998864 5666778896 7888888876543
No 112
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.03 E-value=2.3e-09 Score=124.11 Aligned_cols=173 Identities=23% Similarity=0.223 Sum_probs=95.9
Q ss_pred CCCCCCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCce--eeeeeccchHHHHHhcCchhHHhhcc-----
Q 009994 47 NAGKNGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRI--VGELLQPGGYLKLVELGLEDCVEEID----- 119 (520)
Q Consensus 47 ~~~~~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~--~g~~l~~~~~~~l~~lGl~~~l~~~~----- 119 (520)
....++.++||||||+|.||+++|+.+++.|.+|+|+||........ .+..+...+.+..++.|+.|..+...
T Consensus 402 ~~i~~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~~~ 481 (1167)
T PTZ00306 402 KRIAGSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDTHL 481 (1167)
T ss_pred cccccCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHHHHH
Confidence 33446788999999999999999999999999999999986432211 11122222222222233321111000
Q ss_pred ------------------------cceeceEEEEECCccccccCCCcCC-CCCccceeecc-hHHHHHHHHHHHcC--CC
Q 009994 120 ------------------------AQQVLGYALFKDGKSTRLSYPLEKF-HADVSGRSFHN-GRFIQRMREKAASL--PN 171 (520)
Q Consensus 120 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~l~~~L~~~~~~~--~~ 171 (520)
.....|..+...........+.... .....+..... ..+...|.+.+++. .+
T Consensus 482 ~~~~~~~d~~lv~~~~~~s~e~idwL~~~Gv~f~~~~~~gg~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~~~g 561 (1167)
T PTZ00306 482 SGKGGHCDPGLVKTLSVKSADAISWLSSLGVPLTVLSQLGGASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGR 561 (1167)
T ss_pred hccCCCCCHHHHHHHHHhhHHHHHHHHHcCCCceeeeccCCCCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhccCC
Confidence 0000111110000000000000000 00000100111 22455666665532 48
Q ss_pred eEEEece-EEEEEeeC---------CeEEEEEEEeC---CCcEEEEecCeEEEecCCcchh
Q 009994 172 VRLEQGT-VTSLLEEN---------GTIKGVQYKTK---DGQELRAYAPLTIVCDGCFSNL 219 (520)
Q Consensus 172 v~i~~~~-v~~~~~~~---------~~v~gv~v~~~---~g~~~~~~ad~vV~AdG~~S~v 219 (520)
+++++++ ++++.+++ ++|+||.++.. +|+.+.++|+-||.|+|+++.-
T Consensus 562 v~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~N 622 (1167)
T PTZ00306 562 VTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSND 622 (1167)
T ss_pred cEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcccC
Confidence 9999998 99999763 27999999876 7887889999999999999864
No 113
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.03 E-value=3.9e-09 Score=113.43 Aligned_cols=61 Identities=15% Similarity=0.307 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCe-EEEEEEEe-CCCcEEEEecCeEEEecCCcch
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGT-IKGVQYKT-KDGQELRAYAPLTIVCDGCFSN 218 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~-v~gv~v~~-~~g~~~~~~ad~vV~AdG~~S~ 218 (520)
.+...|.+.+++. +++++.++ ++++..++++ +.||.+.. .+|+...++|+.||.|+|+++.
T Consensus 135 ~i~~~L~~~~~~~-gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 135 EMMMGLMEYLIKE-RIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred HHHHHHHHHHhcC-CCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 4677788888774 89999997 9999877665 88988766 6787778899999999999885
No 114
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.03 E-value=6.3e-09 Score=111.50 Aligned_cols=65 Identities=14% Similarity=0.194 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeC------CeEEEEEEEe-CCCcEEEEecCeEEEecCCcchhhh
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEEN------GTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNLRR 221 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~------~~v~gv~v~~-~~g~~~~~~ad~vV~AdG~~S~vR~ 221 (520)
.+...|.+.+.+.++++++.++ ++++..++ +++.||.+.+ .+|+...++|+.||.|+|+++.+..
T Consensus 139 ~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~ 211 (536)
T PRK09077 139 AVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKVYL 211 (536)
T ss_pred HHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCCCC
Confidence 5778888888877789999998 88888653 7899998865 4677777899999999999997654
No 115
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.03 E-value=8.6e-09 Score=104.83 Aligned_cols=171 Identities=22% Similarity=0.282 Sum_probs=102.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCC--CeEEEEccCCCCCC----ce-----eeeeeccchHH-HHHhcCch--hHH-hh
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDG--RRVHVIERDVTEPD----RI-----VGELLQPGGYL-KLVELGLE--DCV-EE 117 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G--~~V~v~Er~~~~~~----~~-----~g~~l~~~~~~-~l~~lGl~--~~l-~~ 117 (520)
..+||+|||||+.|+++|+.|++++ .+|+|+||...... +. .|....|+... -+...|-. ..+ .+
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999998 99999999865321 11 11112333111 11111100 000 00
Q ss_pred c--ccceeceEEEEECCcc--------------------------ccccCCC-cC----CCCCccceeecchHHHHHHHH
Q 009994 118 I--DAQQVLGYALFKDGKS--------------------------TRLSYPL-EK----FHADVSGRSFHNGRFIQRMRE 164 (520)
Q Consensus 118 ~--~~~~~~~~~~~~~~~~--------------------------~~~~~~~-~~----~~~~~~~~~~~~~~l~~~L~~ 164 (520)
. .......+.+..+.+. ....-|. .+ -...+.+..++...+...|.+
T Consensus 82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e 161 (429)
T COG0579 82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAE 161 (429)
T ss_pred hCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHH
Confidence 0 0111111222111111 0000110 00 001234556778889999999
Q ss_pred HHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcc-hhhhhhcCCC
Q 009994 165 KAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFS-NLRRSLCKPK 227 (520)
Q Consensus 165 ~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S-~vR~~l~~~~ 227 (520)
.+.++ |+++++++ |++++++++++ ..+.+.+|++. ++|++||.|.|..| ++.+..+++.
T Consensus 162 ~a~~~-g~~i~ln~eV~~i~~~~dg~--~~~~~~~g~~~-~~ak~Vin~AGl~Ad~la~~~g~~~ 222 (429)
T COG0579 162 EAQAN-GVELRLNTEVTGIEKQSDGV--FVLNTSNGEET-LEAKFVINAAGLYADPLAQMAGIPE 222 (429)
T ss_pred HHHHc-CCEEEecCeeeEEEEeCCce--EEEEecCCcEE-EEeeEEEECCchhHHHHHHHhCCCc
Confidence 99988 89999998 99999988752 33445677654 78999999999987 6777777654
No 116
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.02 E-value=4.9e-09 Score=112.35 Aligned_cols=165 Identities=21% Similarity=0.278 Sum_probs=92.0
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCC--ceeeeeecc-----chH-----HHHHhc-Cch-hH-H
Q 009994 51 NGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD--RIVGELLQP-----GGY-----LKLVEL-GLE-DC-V 115 (520)
Q Consensus 51 ~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~--~~~g~~l~~-----~~~-----~~l~~l-Gl~-~~-l 115 (520)
.+.++||+|||+|.|||++|+.+++.|.+|+|+||...... ...+..+.. ... ..++.- |+. .. +
T Consensus 13 ~~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v 92 (541)
T PRK07804 13 WRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAV 92 (541)
T ss_pred cccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHH
Confidence 35679999999999999999999999999999999864321 111111110 001 111110 110 00 0
Q ss_pred hh--------cccceeceEEEEE--CCccccccCCCcCCCCCccceeec------chHHHHHHHHHHHcCCCeEEEece-
Q 009994 116 EE--------IDAQQVLGYALFK--DGKSTRLSYPLEKFHADVSGRSFH------NGRFIQRMREKAASLPNVRLEQGT- 178 (520)
Q Consensus 116 ~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~L~~~~~~~~~v~i~~~~- 178 (520)
.. +..-...|+.+.. +|....... ......+.++ -..+.+.|.+.+++. +++++.++
T Consensus 93 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~-----~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~-gV~i~~~~~ 166 (541)
T PRK07804 93 RSLVAEGPRAVRELVALGARFDESPDGRWALTRE-----GGHSRRRIVHAGGDATGAEVQRALDAAVRAD-PLDIREHAL 166 (541)
T ss_pred HHHHHHHHHHHHHHHHcCCccccCCCCcEeeecc-----CCeecCeeEecCCCCCHHHHHHHHHHHHHhC-CCEEEECeE
Confidence 00 0000011221111 010000000 0000001111 135778888888887 59999887
Q ss_pred EEEEEeeC-CeEEEEEEEe----CCCcEEEEecCeEEEecCCcchhhh
Q 009994 179 VTSLLEEN-GTIKGVQYKT----KDGQELRAYAPLTIVCDGCFSNLRR 221 (520)
Q Consensus 179 v~~~~~~~-~~v~gv~v~~----~~g~~~~~~ad~vV~AdG~~S~vR~ 221 (520)
++++..++ +++.||.+.+ .++....+.|+.||.|||++|.++.
T Consensus 167 v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~~~ 214 (541)
T PRK07804 167 ALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQLYA 214 (541)
T ss_pred eeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCCCC
Confidence 99998765 6888988762 1222456889999999999997653
No 117
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.01 E-value=3.3e-09 Score=110.60 Aligned_cols=62 Identities=18% Similarity=0.357 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcchh
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 219 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~v 219 (520)
.+.+.|.+.+++..++++++++ ++++..+++++.||.+.. +++..+++|+.||.|+|+.+.+
T Consensus 129 ~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~-~g~~~~i~Ak~VILAtGG~~~l 191 (433)
T PRK06175 129 KVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLK-DNKQINIYSKVTILATGGIGGL 191 (433)
T ss_pred HHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEE-CCcEEEEEcCeEEEccCccccc
Confidence 4777888888765689999998 999988888888877654 4555568899999999998753
No 118
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.01 E-value=9.6e-09 Score=111.06 Aligned_cols=60 Identities=27% Similarity=0.387 Sum_probs=47.2
Q ss_pred HHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecC-eEEEecCCcchh
Q 009994 158 FIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAP-LTIVCDGCFSNL 219 (520)
Q Consensus 158 l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad-~vV~AdG~~S~v 219 (520)
+...|.+.+++. +++++.++ |+++..+++++++|.+...+++ .++.++ .||.|+|.++.-
T Consensus 216 l~~~L~~~~~~~-Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~-~~i~a~k~VVlAtGg~~~n 277 (574)
T PRK12842 216 LAARLAKSALDL-GIPILTGTPARELLTEGGRVVGARVIDAGGE-RRITARRGVVLACGGFSHD 277 (574)
T ss_pred HHHHHHHHHHhC-CCEEEeCCEEEEEEeeCCEEEEEEEEcCCce-EEEEeCCEEEEcCCCccch
Confidence 556677777776 79999887 9999988889999988765543 456775 799999999843
No 119
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.01 E-value=6.9e-09 Score=109.11 Aligned_cols=70 Identities=13% Similarity=0.206 Sum_probs=52.1
Q ss_pred eeecchHHHHHHHHHHHc----CC-CeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcc-hhhhhh
Q 009994 151 RSFHNGRFIQRMREKAAS----LP-NVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFS-NLRRSL 223 (520)
Q Consensus 151 ~~~~~~~l~~~L~~~~~~----~~-~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S-~vR~~l 223 (520)
..++...+.+.|.+.+++ .+ +++++.++ |+++..+++.+ +.+++.+| +++||.||.|.|++| .+.+.+
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~--~~V~T~~G---~i~A~~VVvaAG~~S~~La~~~ 280 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSL--YKIHTNRG---EIRARFVVVSACGYSLLFAQKM 280 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCe--EEEEECCC---EEEeCEEEECcChhHHHHHHHh
Confidence 356777888999999887 53 27888887 99998875553 34455566 367999999999998 466666
Q ss_pred cC
Q 009994 224 CK 225 (520)
Q Consensus 224 ~~ 225 (520)
++
T Consensus 281 Gi 282 (497)
T PTZ00383 281 GY 282 (497)
T ss_pred CC
Confidence 65
No 120
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.01 E-value=3.2e-09 Score=111.08 Aligned_cols=157 Identities=20% Similarity=0.272 Sum_probs=84.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeee-ccchHHHHHhcCchhHHhhcccceeceEEEEEC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELL-QPGGYLKLVELGLEDCVEEIDAQQVLGYALFKD 131 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l-~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 131 (520)
...+|+|||||++||++|..|.+.|++|+|+||..... |... .+..-. ..+++....................
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vG----G~W~~~~~~~~--d~~~~~~~~~~~~s~~Y~~L~tn~p 82 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVG----GLWVYTPKSES--DPLSLDPTRSIVHSSVYESLRTNLP 82 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCc----ceeecCCCcCC--CccccCCCCcccchhhhhhhhccCC
Confidence 35789999999999999999999999999999986421 2221 111100 1112111000000000000000000
Q ss_pred Cccc-cccCCCcCCC--C-CccceeecchHHHHHHHHHHHcCCCeE--EEece-EEEEEeeCCeEEEEEEEeCCCcEEEE
Q 009994 132 GKST-RLSYPLEKFH--A-DVSGRSFHNGRFIQRMREKAASLPNVR--LEQGT-VTSLLEENGTIKGVQYKTKDGQELRA 204 (520)
Q Consensus 132 ~~~~-~~~~~~~~~~--~-~~~~~~~~~~~l~~~L~~~~~~~~~v~--i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~ 204 (520)
.+.. -..+|..... . .......++..+.+.|.+.++.. ++. +++++ |+++..+++++. |+.+..++...+.
T Consensus 83 ~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~f-gl~~~I~~~t~V~~V~~~~~~w~-V~~~~~~~~~~~~ 160 (461)
T PLN02172 83 RECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREF-KIEEMVRFETEVVRVEPVDGKWR-VQSKNSGGFSKDE 160 (461)
T ss_pred HhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHc-CCcceEEecCEEEEEeecCCeEE-EEEEcCCCceEEE
Confidence 0000 0012211000 0 00011234567888999998887 565 77776 999987666433 5444333343345
Q ss_pred ecCeEEEecCCcc
Q 009994 205 YAPLTIVCDGCFS 217 (520)
Q Consensus 205 ~ad~vV~AdG~~S 217 (520)
.+|.||.|+|..+
T Consensus 161 ~~d~VIvAtG~~~ 173 (461)
T PLN02172 161 IFDAVVVCNGHYT 173 (461)
T ss_pred EcCEEEEeccCCC
Confidence 6999999999875
No 121
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.00 E-value=1.8e-09 Score=117.83 Aligned_cols=62 Identities=15% Similarity=0.264 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCeEEEecCCcchh
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNL 219 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~-~~g~~~~~~ad~vV~AdG~~S~v 219 (520)
.+...|.+.+.+. +++++.++ ++++..+++++.||.+.+ .+|+...+.|+.||.|+|+++.+
T Consensus 159 ~l~~~L~~~~~~~-gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 159 TMLYAVDNEAIKL-GVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGRI 222 (657)
T ss_pred HHHHHHHHHHHhC-CCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCC
Confidence 3556777878776 89999987 999998888999999876 67887778999999999998865
No 122
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.00 E-value=2.1e-09 Score=116.86 Aligned_cols=63 Identities=22% Similarity=0.355 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHcCC-------C-----eEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCeEEEecCCcchh
Q 009994 157 RFIQRMREKAASLP-------N-----VRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNL 219 (520)
Q Consensus 157 ~l~~~L~~~~~~~~-------~-----v~i~~~~-v~~~~~~~~~v~gv~v~~-~~g~~~~~~ad~vV~AdG~~S~v 219 (520)
.+...|.+.+.+.+ | ++++.++ ++++..+++++.||.+.. .+|+...+.|+.||.|+|+.+..
T Consensus 139 ~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~ 215 (626)
T PRK07803 139 ELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIGKS 215 (626)
T ss_pred HHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCcccCC
Confidence 46777777776652 3 9999987 999988888898887654 56776778999999999987654
No 123
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.00 E-value=1.5e-08 Score=109.59 Aligned_cols=60 Identities=25% Similarity=0.412 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEec-CeEEEecCCcch
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYA-PLTIVCDGCFSN 218 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~a-d~vV~AdG~~S~ 218 (520)
.+.+.|.+.+++. |++++.++ |+++..+++++++|.+...++ ..+++| +.||.|+|.++.
T Consensus 218 ~l~~~L~~~a~~~-Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~-~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 218 ALVARLLKSAEDL-GVRIWESAPARELLREDGRVAGAVVETPGG-LQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred HHHHHHHHHHHhC-CCEEEcCCEEEEEEEeCCEEEEEEEEECCc-EEEEEeCCEEEEcCCCccc
Confidence 3667888888887 79999887 999988888899998876544 456789 999999999985
No 124
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.00 E-value=6.8e-08 Score=99.51 Aligned_cols=63 Identities=24% Similarity=0.275 Sum_probs=46.7
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcchh
Q 009994 151 RSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 219 (520)
Q Consensus 151 ~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~v 219 (520)
..++...+.+.|.+.+.+.+...+...+ +..+..+. + .+.+.+.+|+ +.||.||.|+|.++..
T Consensus 151 ~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~-~--~~~v~t~~g~---i~a~~vv~a~G~~~~~ 214 (387)
T COG0665 151 GHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDG-R--VVGVETDGGT---IEADKVVLAAGAWAGE 214 (387)
T ss_pred CcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecC-c--EEEEEeCCcc---EEeCEEEEcCchHHHH
Confidence 3566678899999999998546666566 77777652 2 3556677776 5699999999999764
No 125
>PRK12839 hypothetical protein; Provisional
Probab=98.99 E-value=1.3e-08 Score=109.43 Aligned_cols=62 Identities=29% Similarity=0.401 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEeCCCcEEEEecCeEEEecCCcch
Q 009994 156 GRFIQRMREKAASLPNVRLEQGT-VTSLLEE-NGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 218 (520)
Q Consensus 156 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~ 218 (520)
..+...|.+.+++. +++++.++ ++++..+ +++++||.+...+|+...+.++.||.|+|+++.
T Consensus 214 ~~l~~~L~~~a~~~-Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 214 TALTGRLLRSADDL-GVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred HHHHHHHHHHHHHC-CCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 35677788888876 79999887 9998764 678999998877776444456899999999986
No 126
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.97 E-value=5.7e-09 Score=112.74 Aligned_cols=62 Identities=11% Similarity=0.205 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEe-CCCcEEEEecCeEEEecCCcchh
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEE-NGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNL 219 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~gv~v~~-~~g~~~~~~ad~vV~AdG~~S~v 219 (520)
.+...|.+.+.+. +++++.++ ++++..+ ++++.||.+.+ .+|+...++|+.||.|+|+++.+
T Consensus 144 ~i~~~L~~~~~~~-gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 144 ALLHTLYQQNLKN-HTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRI 208 (588)
T ss_pred HHHHHHHHHhhhc-CCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence 4777888877765 89998887 9999875 68899998754 57777788999999999999864
No 127
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.97 E-value=9e-09 Score=111.74 Aligned_cols=62 Identities=18% Similarity=0.297 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEe-eCCeEEEEEEEe-CCCcEEEEecCeEEEecCCcchh
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLE-ENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNL 219 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~-~~~~v~gv~v~~-~~g~~~~~~ad~vV~AdG~~S~v 219 (520)
.+...|.+.+.+. +++++.++ ++++.. +++++.||.+.. .+|+...++|+.||.|+|+++..
T Consensus 167 ~i~~~L~~~a~~~-gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 231 (617)
T PTZ00139 167 AMLHTLYGQSLKY-DCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRA 231 (617)
T ss_pred HHHHHHHHHHHhC-CCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCccc
Confidence 5788888888876 89999997 999887 678899998754 57877789999999999998753
No 128
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.97 E-value=1.8e-08 Score=108.92 Aligned_cols=65 Identities=23% Similarity=0.261 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEec-CeEEEecCCcchhhhhh
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYA-PLTIVCDGCFSNLRRSL 223 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~a-d~vV~AdG~~S~vR~~l 223 (520)
.+...|.+.+++. +++++.++ ++++..+++++.+|.+.. +|+..++.| +.||.|+|+++...+.+
T Consensus 222 ~l~~aL~~~~~~~-Gv~i~~~t~v~~Li~~~g~V~GV~~~~-~g~~~~i~A~~~VVlAtGg~~~n~em~ 288 (578)
T PRK12843 222 ALIGRLLYSLRAR-GVRILTQTDVESLETDHGRVIGATVVQ-GGVRRRIRARGGVVLATGGFNRHPQLR 288 (578)
T ss_pred HHHHHHHHHHHhC-CCEEEeCCEEEEEEeeCCEEEEEEEec-CCeEEEEEccceEEECCCCcccCHHHH
Confidence 4677788888876 79999887 999988788999988764 565566776 78999999999864443
No 129
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.97 E-value=9.2e-09 Score=111.06 Aligned_cols=61 Identities=25% Similarity=0.381 Sum_probs=47.4
Q ss_pred HHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEeCCCcEEEEecC-eEEEecCCcchhh
Q 009994 158 FIQRMREKAASLPNVRLEQGT-VTSLLEE-NGTIKGVQYKTKDGQELRAYAP-LTIVCDGCFSNLR 220 (520)
Q Consensus 158 l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~gv~v~~~~g~~~~~~ad-~vV~AdG~~S~vR 220 (520)
+...|.+.+++. +++++.++ ++++..+ +++|+||.+.. +|+.++++|+ -||.|+|.++.-.
T Consensus 215 ~~~~l~~~~~~~-gv~i~~~~~~~~Li~d~~g~V~Gv~~~~-~~~~~~i~a~~aVilAtGGf~~N~ 278 (584)
T PRK12835 215 LVARLRLALKDA-GVPLWLDSPMTELITDPDGAVVGAVVER-EGRTLRIGARRGVILATGGFDHDM 278 (584)
T ss_pred HHHHHHHHHHhC-CceEEeCCEEEEEEECCCCcEEEEEEEe-CCcEEEEEeceeEEEecCcccCCH
Confidence 344566666664 89999998 9999986 57899998864 5666778897 6999999998643
No 130
>PLN02815 L-aspartate oxidase
Probab=98.97 E-value=8e-09 Score=111.24 Aligned_cols=164 Identities=16% Similarity=0.270 Sum_probs=91.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCce--eeeeecc-----chHH-HHHh---cC--ch-hHH-h
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRI--VGELLQP-----GGYL-KLVE---LG--LE-DCV-E 116 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~--~g~~l~~-----~~~~-~l~~---lG--l~-~~l-~ 116 (520)
+.++||+|||+|.|||++|+.+++.| +|+|+||........ .+..+.. ...+ .++. .| +. +.+ .
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~ 105 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVR 105 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHHH
Confidence 55789999999999999999999999 999999986422111 1111110 0111 1111 01 10 110 0
Q ss_pred h--------cccceeceEEEEECCccccccCCCcCCCCCccceeec-----chHHHHHHHHHHHcCCCeEEEece-EEEE
Q 009994 117 E--------IDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRSFH-----NGRFIQRMREKAASLPNVRLEQGT-VTSL 182 (520)
Q Consensus 117 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~L~~~~~~~~~v~i~~~~-v~~~ 182 (520)
. +..-...|..+...... . +...........+.++ -..+...|.+.+++.+++++++++ ++++
T Consensus 106 ~~~~~s~e~i~~L~~~Gv~F~~~~~g-~--~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~L 182 (594)
T PLN02815 106 VVCTEGPERVKELIAMGASFDHGEDG-N--LHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDL 182 (594)
T ss_pred HHHHHHHHHHHHHHHhCCeeeecCCC-C--ccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhhee
Confidence 0 00001122222111100 0 0000000000001111 124777888888777789999987 8998
Q ss_pred EeeC-C---eEEEEEEEe-CCCcEEEEecCeEEEecCCcchh
Q 009994 183 LEEN-G---TIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNL 219 (520)
Q Consensus 183 ~~~~-~---~v~gv~v~~-~~g~~~~~~ad~vV~AdG~~S~v 219 (520)
..++ + ++.||.+.+ .+|+...+.|+.||.|+|+++.+
T Consensus 183 i~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 224 (594)
T PLN02815 183 LTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHI 224 (594)
T ss_pred eeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcceee
Confidence 8753 3 278988754 57777788999999999999853
No 131
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.96 E-value=8e-09 Score=112.20 Aligned_cols=62 Identities=21% Similarity=0.282 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEe-CCCcEEEEecCeEEEecCCcchh
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEE-NGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNL 219 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~gv~v~~-~~g~~~~~~ad~vV~AdG~~S~v 219 (520)
.+...|.+.+.+. +++++.++ ++++..+ ++++.||.+.+ .+|+...+.|+.||.|+|+++..
T Consensus 188 ~i~~~L~~~a~~~-gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 188 AMLHTLYGQAMKH-NTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRA 252 (635)
T ss_pred HHHHHHHHHHHhC-CCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence 4778888888776 89999887 9998876 67899998865 57877789999999999999853
No 132
>PRK08275 putative oxidoreductase; Provisional
Probab=98.96 E-value=1.1e-08 Score=110.28 Aligned_cols=62 Identities=21% Similarity=0.292 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEe-CCCcEEEEecCeEEEecCCcchh
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEE-NGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNL 219 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~gv~v~~-~~g~~~~~~ad~vV~AdG~~S~v 219 (520)
.+.+.|.+.+++. ++++.+++ ++++..+ ++++.||.+.+ .+|+...++|+.||.|+|+.+.+
T Consensus 138 ~i~~~L~~~~~~~-gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 138 DIKKVLYRQLKRA-RVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL 202 (554)
T ss_pred HHHHHHHHHHHHC-CCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcccc
Confidence 4778888888775 89999998 9999876 67888888654 56776678999999999998754
No 133
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.96 E-value=1.1e-08 Score=110.77 Aligned_cols=61 Identities=16% Similarity=0.288 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeC-CeEEEEEEEe-CCCcEEEEecCeEEEecCCcch
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEEN-GTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSN 218 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~-~~v~gv~v~~-~~g~~~~~~ad~vV~AdG~~S~ 218 (520)
.+...|.+.+.+. +++++.++ ++++..++ +++.||.+.+ .+|+...+.|+.||.|+|+++.
T Consensus 150 ~i~~~L~~~~~~~-gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 150 AILHTLYQQSLKH-NAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGR 213 (598)
T ss_pred HHHHHHHHHHhhc-CCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcc
Confidence 4778888888775 89999887 99998765 7899998754 5787778999999999999985
No 134
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.96 E-value=1.3e-08 Score=110.12 Aligned_cols=62 Identities=13% Similarity=0.222 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEe-CCCcEEEEecCeEEEecCCcchh
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEE-NGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNL 219 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~gv~v~~-~~g~~~~~~ad~vV~AdG~~S~v 219 (520)
.+...|.+.+.+. +++++.++ ++++..+ ++++.||.+.+ .+|+...++|+.||.|+|+++.+
T Consensus 149 ~l~~~L~~~~~~~-gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 149 ALLHTLYQQNVAA-KTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI 213 (591)
T ss_pred HHHHHHHHHHHhc-CCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence 4778888888775 89998887 9998875 57899998854 56776778999999999999864
No 135
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.95 E-value=5.6e-09 Score=110.07 Aligned_cols=60 Identities=25% Similarity=0.349 Sum_probs=46.0
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcch
Q 009994 151 RSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 218 (520)
Q Consensus 151 ~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~ 218 (520)
..++..++.+.|.+.+++. |+++++++ |+++.. ++. +.+.+.+|+ ++||.||.|+|++|.
T Consensus 178 g~i~P~~l~~~L~~~a~~~-Gv~i~~~t~V~~i~~-~~~---~~v~t~~g~---v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 178 ASVQPGLLVRGLRRVALEL-GVEIHENTPMTGLEE-GQP---AVVRTPDGQ---VTADKVVLALNAWMA 238 (460)
T ss_pred eEECHHHHHHHHHHHHHHc-CCEEECCCeEEEEee-CCc---eEEEeCCcE---EECCEEEEccccccc
Confidence 4567778999999999887 89999987 888875 332 345556663 679999999999864
No 136
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.93 E-value=1.7e-08 Score=107.46 Aligned_cols=61 Identities=26% Similarity=0.452 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcchh
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 219 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~v 219 (520)
.+.+.|.+.+. .++++++++ ++++..+++++.||.+...+|+...++|+.||.|+|+++.+
T Consensus 131 ~i~~~L~~~~~--~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~~ 192 (510)
T PRK08071 131 NLLEHLLQELV--PHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCGGL 192 (510)
T ss_pred HHHHHHHHHHh--cCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCccc
Confidence 46777877775 379999887 99998778888999887777777778999999999998863
No 137
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.93 E-value=2.5e-08 Score=95.44 Aligned_cols=172 Identities=26% Similarity=0.343 Sum_probs=104.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhh----CCCeEEEEccCCCCCCc----eeeeeecc-----------chHHHHH----h
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGK----DGRRVHVIERDVTEPDR----IVGELLQP-----------GGYLKLV----E 108 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~----~G~~V~v~Er~~~~~~~----~~g~~l~~-----------~~~~~l~----~ 108 (520)
..+.||+|||||..|++.|+.|.+ .|++|+|+||+...... +.|..-+. -+.+.|+ .
T Consensus 84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlpEnIqmSLF~a~Flr~a~eh 163 (509)
T KOG2853|consen 84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLPENIQMSLFTAEFLRNAREH 163 (509)
T ss_pred ccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccchhhhhhhHHHHHHHHHHHh
Confidence 357899999999999999999986 47999999998653321 12211111 1112222 2
Q ss_pred cCchhHHh-hcccceeceEEEEECCcc-------------------------ccccCCCcC--------CCCCccceeec
Q 009994 109 LGLEDCVE-EIDAQQVLGYALFKDGKS-------------------------TRLSYPLEK--------FHADVSGRSFH 154 (520)
Q Consensus 109 lGl~~~l~-~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~--------~~~~~~~~~~~ 154 (520)
+|+.|.-+ .+...+ .|+-.....+. ....||... .+-...| .++
T Consensus 164 l~~~d~~~vdl~f~P-~GyL~LA~ee~ae~m~s~~kvQ~e~GAk~eLls~d~Lt~rfPwlntegVaLa~lG~e~EG-wfd 241 (509)
T KOG2853|consen 164 LGILDSEQVDLNFFP-TGYLRLASEEEAEMMRSNSKVQNELGAKVELLSPDELTKRFPWLNTEGVALASLGVEKEG-WFD 241 (509)
T ss_pred hccccCCCCCcccCC-CceEEEcchhhHHHHHHhHHHHHhhcchhcccCHHHHhhhCCcccccceeeeeccccccc-ccC
Confidence 33321100 001111 22222211111 111222111 1111223 367
Q ss_pred chHHHHHHHHHHHcCCCeEEEeceEEEEEee----------CC-------eEEEEEEEeCCCcEEEEecCeEEEecCCcc
Q 009994 155 NGRFIQRMREKAASLPNVRLEQGTVTSLLEE----------NG-------TIKGVQYKTKDGQELRAYAPLTIVCDGCFS 217 (520)
Q Consensus 155 ~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~----------~~-------~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S 217 (520)
...|...+++.+... |+.+..|.|++++.+ ++ ++.+|.++..|+....++++++|.|.|++|
T Consensus 242 pw~LLs~~rrk~~~l-Gv~f~~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~s 320 (509)
T KOG2853|consen 242 PWALLSGIRRKAITL-GVQFVKGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGAWS 320 (509)
T ss_pred HHHHHHHHHHHhhhh-cceEecceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCccH
Confidence 778999999999998 899999999888743 33 466777777777777899999999999998
Q ss_pred -hhhhhhcCC
Q 009994 218 -NLRRSLCKP 226 (520)
Q Consensus 218 -~vR~~l~~~ 226 (520)
.+.+..++.
T Consensus 321 ~QvArlAgIG 330 (509)
T KOG2853|consen 321 GQVARLAGIG 330 (509)
T ss_pred HHHHHHhccC
Confidence 566766765
No 138
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.91 E-value=7.7e-09 Score=111.83 Aligned_cols=63 Identities=13% Similarity=0.101 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcC---CCeEEEece-EEEEEee-CCeEEEEEEEeC-CCcEEEEecCeEEEecCCcchh
Q 009994 157 RFIQRMREKAASL---PNVRLEQGT-VTSLLEE-NGTIKGVQYKTK-DGQELRAYAPLTIVCDGCFSNL 219 (520)
Q Consensus 157 ~l~~~L~~~~~~~---~~v~i~~~~-v~~~~~~-~~~v~gv~v~~~-~g~~~~~~ad~vV~AdG~~S~v 219 (520)
.+...|.+.+.+. +++++..++ ++++..+ ++++.||.+.+. +++...+.|+.||.|+|+++.+
T Consensus 134 ~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 202 (589)
T PRK08641 134 QLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGII 202 (589)
T ss_pred HHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcCC
Confidence 4667777776653 237888886 8888874 688999998764 5666678999999999999863
No 139
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.90 E-value=1.3e-08 Score=109.15 Aligned_cols=61 Identities=21% Similarity=0.262 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeC--CeEEEEEEEeCCCcEEEEecCeEEEecCCcch
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEEN--GTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 218 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~--~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~ 218 (520)
.+...|.+.+.+.+++++++++ ++++..++ +++.||.+.. +|+...++|+.||.|+|+++.
T Consensus 135 ~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~-~g~~~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 135 AIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLY-QGQITWLRAGAVILATGGGGQ 198 (553)
T ss_pred HHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEE-CCeEEEEEcCEEEEcCCCCcc
Confidence 4777888888766689999987 99998763 7889988764 666667889999999999764
No 140
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.89 E-value=8.4e-09 Score=104.68 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=76.3
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCc--------eeeeeeccchHHHHHhcCchh-HHhhcccceece
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDR--------IVGELLQPGGYLKLVELGLED-CVEEIDAQQVLG 125 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~--------~~g~~l~~~~~~~l~~lGl~~-~l~~~~~~~~~~ 125 (520)
.||+|||||++|+.+|+.|+++|++|+|+|+.+..... ...-....++...+...|++. .++..+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~em~~lgs----- 77 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKEEMRRLGS----- 77 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHHHHHHhcc-----
Confidence 58999999999999999999999999999987543211 011223445556777888774 4443321
Q ss_pred EEEEECCccccccCCCcCCCCCccc-eeecchHHHHHHHHHHHcCCCeEEEeceEEEEE
Q 009994 126 YALFKDGKSTRLSYPLEKFHADVSG-RSFHNGRFIQRMREKAASLPNVRLEQGTVTSLL 183 (520)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~ 183 (520)
. .+..... ... ...+ ..++|..|.+.|.+.++++++++++.++|+++.
T Consensus 78 l-~~~aad~--~~v-------PA~gaLvvdR~~~~~~L~~~L~~~pnI~l~~~eV~~l~ 126 (436)
T PRK05335 78 L-IMEAADA--HRV-------PAGGALAVDREGFSEYVTEALENHPLITVIREEVTEIP 126 (436)
T ss_pred h-heecccc--cCC-------CCccceecCHHHHHHHHHHHHHcCCCcEEEccchhccc
Confidence 1 1111100 011 1112 367888899999999999999999876677774
No 141
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.89 E-value=1e-08 Score=108.14 Aligned_cols=59 Identities=29% Similarity=0.394 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcchhhh
Q 009994 157 RFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLRR 221 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~vR~ 221 (520)
.+.+.|.+.+++. ++++.+++++++..+++++.+|.+ +++ .++++.||.|+|.+|....
T Consensus 121 ~i~~~L~~~~~~~-gv~i~~~~v~~l~~~~g~v~Gv~~---~g~--~i~a~~VVLATGG~~~~~~ 179 (466)
T PRK08401 121 HIIKILYKHAREL-GVNFIRGFAEELAIKNGKAYGVFL---DGE--LLKFDATVIATGGFSGLFK 179 (466)
T ss_pred HHHHHHHHHHHhc-CCEEEEeEeEEEEeeCCEEEEEEE---CCE--EEEeCeEEECCCcCcCCCC
Confidence 5788888888876 788887778888877788777765 343 4679999999999998654
No 142
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.89 E-value=1.6e-08 Score=103.36 Aligned_cols=58 Identities=22% Similarity=0.201 Sum_probs=42.3
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcch
Q 009994 151 RSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 218 (520)
Q Consensus 151 ~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~ 218 (520)
..++...+...|.+.+.+..|++++.++ |+++..+ .+.+.+|+ ++||.||.|+|.+|.
T Consensus 140 g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~-------~v~t~~g~---i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 140 LRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVETG-------TVRTSRGD---VHADQVFVCPGADFE 198 (365)
T ss_pred eeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC-------eEEeCCCc---EEeCEEEECCCCChh
Confidence 3466677888898887765478998876 8888532 23345564 469999999999874
No 143
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.87 E-value=2.7e-08 Score=105.98 Aligned_cols=62 Identities=19% Similarity=0.365 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcchh
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 219 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~v 219 (520)
.+.+.|.+.+.+.++++++.++ ++++..+++++.||.+... ++...++|+.||.|+|+++..
T Consensus 137 ~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~-~~~~~i~Ak~VVLATGG~~~~ 199 (513)
T PRK07512 137 AIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATA-GGPVVLPARAVVLATGGIGGL 199 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeC-CeEEEEECCEEEEcCCCCcCC
Confidence 4788888888776689999997 9998877788889887654 334568899999999998753
No 144
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.87 E-value=1.5e-08 Score=109.10 Aligned_cols=61 Identities=18% Similarity=0.112 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeC---CeEEEEEEEe-CCCcEEEEecCeEEEecCCcch
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEEN---GTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSN 218 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~---~~v~gv~v~~-~~g~~~~~~ad~vV~AdG~~S~ 218 (520)
.+...+...+.+. +++++..+ ++++..++ +++.||.+.+ .+|+...+.|+.||.|+|+++.
T Consensus 127 ~~~r~l~~~l~~~-~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 192 (614)
T TIGR02061 127 SYKPIVAEAAKNA-LGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVN 192 (614)
T ss_pred hHHHHHHHHHHhC-CCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcccc
Confidence 3444555555554 57888887 99998764 6899998854 5777777899999999999874
No 145
>PLN02612 phytoene desaturase
Probab=98.86 E-value=8.3e-07 Score=95.72 Aligned_cols=64 Identities=28% Similarity=0.397 Sum_probs=48.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCce------------eee----eeccchHHHHHhcCchhHH
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRI------------VGE----LLQPGGYLKLVELGLEDCV 115 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~------------~g~----~l~~~~~~~l~~lGl~~~l 115 (520)
.+..+|+|||||++||++|+.|+++|++|+|+|++.....+. .|. ...++..+.++++|+.+.+
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~~ 170 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRL 170 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCcccc
Confidence 346799999999999999999999999999999975422211 111 1246677889999986543
No 146
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.86 E-value=8.3e-09 Score=96.19 Aligned_cols=136 Identities=22% Similarity=0.286 Sum_probs=71.6
Q ss_pred EEECCCHHHHHHHHHHhhCCCe-EEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcccc
Q 009994 58 IIVGAGVAGAALAHTLGKDGRR-VHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKSTR 136 (520)
Q Consensus 58 ~IVGaG~aGl~~A~~La~~G~~-V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~ 136 (520)
+||||||+||++|..|.++|.+ |+|+||....... ........-+..-+... .. .+.. +-.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~----w~~~~~~~~~~~~~~~~--~~------~~~~---~~~--- 62 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGV----WRRYYSYTRLHSPSFFS--SD------FGLP---DFE--- 62 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTH----HHCH-TTTT-BSSSCCT--GG------SS-----CCC---
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCe----eEEeCCCCccccCcccc--cc------ccCC---ccc---
Confidence 6999999999999999999999 9999998642211 00000000000000000 00 0000 000
Q ss_pred ccCCCcCCCC-CccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecC
Q 009994 137 LSYPLEKFHA-DVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDG 214 (520)
Q Consensus 137 ~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG 214 (520)
.+....... ........+..+.+.|.+.+++. ++.++.++ |+++..++++ .+++..+++ +++||.||.|+|
T Consensus 63 -~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~i~~~~~V~~v~~~~~~---w~v~~~~~~--~~~a~~VVlAtG 135 (203)
T PF13738_consen 63 -SFSFDDSPEWRWPHDFPSGEEVLDYLQEYAERF-GLEIRFNTRVESVRRDGDG---WTVTTRDGR--TIRADRVVLATG 135 (203)
T ss_dssp -HSCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHT-TGGEETS--EEEEEEETTT---EEEEETTS---EEEEEEEEE---
T ss_pred -ccccccCCCCCCCcccCCHHHHHHHHHHHHhhc-CcccccCCEEEEEEEeccE---EEEEEEecc--eeeeeeEEEeee
Confidence 000000000 00112355667888888888887 67788887 9999998876 446667774 466999999999
Q ss_pred Ccch
Q 009994 215 CFSN 218 (520)
Q Consensus 215 ~~S~ 218 (520)
..|.
T Consensus 136 ~~~~ 139 (203)
T PF13738_consen 136 HYSH 139 (203)
T ss_dssp SSCS
T ss_pred ccCC
Confidence 8764
No 147
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.84 E-value=3.9e-08 Score=106.41 Aligned_cols=62 Identities=16% Similarity=0.122 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeC----CeEEEEEEEe-CCCcEEEEecCeEEEecCCcchh
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEEN----GTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNL 219 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~----~~v~gv~v~~-~~g~~~~~~ad~vV~AdG~~S~v 219 (520)
.+.+.|.+.+.+. ++++..++ ++++..++ +++.||.+.. .+|+...++|+.||.|+|+++.+
T Consensus 141 ~i~~~L~~~~~~~-gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 141 MILQTLYQNCVKH-GVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRV 208 (583)
T ss_pred HHHHHHHHHHHhc-CCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence 4778888888776 89999887 99988655 7889998744 56766678999999999999864
No 148
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.84 E-value=2.8e-08 Score=98.49 Aligned_cols=112 Identities=26% Similarity=0.351 Sum_probs=74.8
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
+||+|||||++|+++|..|++.|.+|+|+|+... .|..... ..+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~-----gg~~~~~------------~~~------------------- 44 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP-----GGQLTTT------------TEV------------------- 44 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC-----Ccceeec------------ccc-------------------
Confidence 6999999999999999999999999999998741 1110000 000
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecC
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDG 214 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG 214 (520)
..+|. +. ..+....+...+.+.+++. +++++.++|+++..+++. +.+...+++ ++++|++|.|+|
T Consensus 45 --~~~~~--~~-----~~~~~~~~~~~l~~~~~~~-gv~~~~~~v~~v~~~~~~---~~v~~~~~~--~~~~d~liiAtG 109 (300)
T TIGR01292 45 --ENYPG--FP-----EGISGPELMEKMKEQAVKF-GAEIIYEEVIKVDLSDRP---FKVKTGDGK--EYTAKAVIIATG 109 (300)
T ss_pred --cccCC--CC-----CCCChHHHHHHHHHHHHHc-CCeEEEEEEEEEEecCCe---eEEEeCCCC--EEEeCEEEECCC
Confidence 00110 00 0122235667777878777 788888669888876553 344455565 367999999999
Q ss_pred Ccc
Q 009994 215 CFS 217 (520)
Q Consensus 215 ~~S 217 (520)
...
T Consensus 110 ~~~ 112 (300)
T TIGR01292 110 ASA 112 (300)
T ss_pred CCc
Confidence 864
No 149
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.84 E-value=4.1e-08 Score=106.36 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=46.2
Q ss_pred HHHHHHHHHHc---CCCeEEEece-EEEEEee-CCeEEEEEEEeC-CCcEEEEecCeEEEecCCcchh
Q 009994 158 FIQRMREKAAS---LPNVRLEQGT-VTSLLEE-NGTIKGVQYKTK-DGQELRAYAPLTIVCDGCFSNL 219 (520)
Q Consensus 158 l~~~L~~~~~~---~~~v~i~~~~-v~~~~~~-~~~v~gv~v~~~-~g~~~~~~ad~vV~AdG~~S~v 219 (520)
+...|.+.+++ .+++++++++ ++++..+ ++++.||.+.+. +|+...+.|+.||.|+|+++.+
T Consensus 131 i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 198 (603)
T TIGR01811 131 LLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYGNV 198 (603)
T ss_pred HHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcCc
Confidence 44444444432 3579999997 9999875 458999998764 6776778999999999998764
No 150
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.7e-08 Score=97.99 Aligned_cols=114 Identities=27% Similarity=0.348 Sum_probs=76.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCe-EEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEEC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRR-VHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKD 131 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~-V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 131 (520)
+.+||+|||||||||++|.++++.|.+ ++|+|+... | .+ +.....+
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~------g--g~---------~~~~~~v---------------- 48 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEP------G--GQ---------LTKTTDV---------------- 48 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCc------C--Cc---------cccceee----------------
Confidence 468999999999999999999999999 777777631 1 00 0000000
Q ss_pred CccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEE
Q 009994 132 GKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIV 211 (520)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~ 211 (520)
-.||.. .. .+.-..|.+.+.+.+... ++++...+|.++...++ ..++++.+|+ ++|+.||.
T Consensus 49 -----enypg~--~~-----~~~g~~L~~~~~~~a~~~-~~~~~~~~v~~v~~~~~---~F~v~t~~~~---~~ak~vIi 109 (305)
T COG0492 49 -----ENYPGF--PG-----GILGPELMEQMKEQAEKF-GVEIVEDEVEKVELEGG---PFKVKTDKGT---YEAKAVII 109 (305)
T ss_pred -----cCCCCC--cc-----CCchHHHHHHHHHHHhhc-CeEEEEEEEEEEeecCc---eEEEEECCCe---EEEeEEEE
Confidence 011100 00 022345778888888765 88888877888876664 3566677776 56999999
Q ss_pred ecCCcch
Q 009994 212 CDGCFSN 218 (520)
Q Consensus 212 AdG~~S~ 218 (520)
|+|....
T Consensus 110 AtG~~~~ 116 (305)
T COG0492 110 ATGAGAR 116 (305)
T ss_pred CcCCccc
Confidence 9998653
No 151
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.81 E-value=7.6e-07 Score=95.12 Aligned_cols=63 Identities=24% Similarity=0.303 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcchhhhhh
Q 009994 156 GRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLRRSL 223 (520)
Q Consensus 156 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~vR~~l 223 (520)
..+.+.|.+.+++. |++++.++ |+++..+++++++|+ ..+|++ +.||.||.|.+....+.+.+
T Consensus 219 ~~l~~al~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~V~--~~~g~~--~~ad~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 219 GALVAAMAKLAEDL-GGELRLNAEVIRIETEGGRATAVH--LADGER--LDADAVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHHHHHHHHC-CCEEEECCeEEEEEeeCCEEEEEE--ECCCCE--EECCEEEECCcHHHHHHHhc
Confidence 35777888888887 78898887 999988777765554 456664 56999999988766665544
No 152
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.79 E-value=2.9e-06 Score=89.69 Aligned_cols=61 Identities=25% Similarity=0.379 Sum_probs=45.3
Q ss_pred CcEEEECCCHHHHHHHHHHhhC----CCeEEEEccCCCCCCcee-----ee-------ee---ccchHHHHHhcCchhHH
Q 009994 55 TDVIIVGAGVAGAALAHTLGKD----GRRVHVIERDVTEPDRIV-----GE-------LL---QPGGYLKLVELGLEDCV 115 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~----G~~V~v~Er~~~~~~~~~-----g~-------~l---~~~~~~~l~~lGl~~~l 115 (520)
.||+|||||++||++|+.|+++ |++|+|+|+++....+.. |. .+ .+...+.++++|+.+.+
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~~~ 82 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLEHVL 82 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCCccc
Confidence 5899999999999999999999 999999999875432211 11 11 23356778888886543
No 153
>PRK07233 hypothetical protein; Provisional
Probab=98.78 E-value=1.6e-06 Score=90.79 Aligned_cols=59 Identities=37% Similarity=0.375 Sum_probs=43.6
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceee-----e-------e---eccchHHHHHhcCchhH
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVG-----E-------L---LQPGGYLKLVELGLEDC 114 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g-----~-------~---l~~~~~~~l~~lGl~~~ 114 (520)
+|+|||||++||++|+.|+++|++|+|+|++.....+... . . -.+...+.++++|+.+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~~ 74 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDELGLEDK 74 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHcCCCCc
Confidence 5899999999999999999999999999999755432211 1 1 12334567778887543
No 154
>PRK14694 putative mercuric reductase; Provisional
Probab=98.78 E-value=7.8e-08 Score=101.62 Aligned_cols=36 Identities=28% Similarity=0.454 Sum_probs=33.7
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccC
Q 009994 51 NGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (520)
Q Consensus 51 ~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~ 86 (520)
...+|||+||||||+|+++|..|++.|.+|+|+|+.
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~ 38 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERG 38 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc
Confidence 356799999999999999999999999999999986
No 155
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.77 E-value=3.2e-08 Score=104.67 Aligned_cols=143 Identities=15% Similarity=0.195 Sum_probs=76.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHH--H-HHhcCchhHHhhcccceeceEEEE
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYL--K-LVELGLEDCVEEIDAQQVLGYALF 129 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~--~-l~~lGl~~~l~~~~~~~~~~~~~~ 129 (520)
..|||+||||||+|+++|..|++.|.+|+|+|+.. ..|..++.+.+. . +....+.+.+... ...+...
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-----~GG~c~~~gciPsk~l~~~a~~~~~~~~~---~~~g~~~- 73 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGK-----LGGTCLHKGCIPSKALLHSAEVFQTAKKA---SPFGISV- 73 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-----CCcceEcCCcCchHHHHHHHHHHHHHHHH---HhcCccC-
Confidence 46999999999999999999999999999999852 233334433221 1 1111111111110 0001000
Q ss_pred ECCccccccCCCcCCCCCccceeecchH----HHHHHHHHHHcCCCeEEEeceEEEEEee--CCeEEEEEEEeCCCcEEE
Q 009994 130 KDGKSTRLSYPLEKFHADVSGRSFHNGR----FIQRMREKAASLPNVRLEQGTVTSLLEE--NGTIKGVQYKTKDGQELR 203 (520)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~L~~~~~~~~~v~i~~~~v~~~~~~--~~~v~gv~v~~~~g~~~~ 203 (520)
......++ ...-.+.. +.+...+.+++ .++++..++++.+..+ +..-..+++...+|+..+
T Consensus 74 ---~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~-~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~ 140 (472)
T PRK05976 74 ---SGPALDFA---------KVQERKDGIVDRLTKGVAALLKK-GKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEM 140 (472)
T ss_pred ---CCCccCHH---------HHHHHHHHHHHHHHHHHHHHHHh-CCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEE
Confidence 00000000 00000111 22223333444 4899999987766543 000013556666775456
Q ss_pred EecCeEEEecCCcc
Q 009994 204 AYAPLTIVCDGCFS 217 (520)
Q Consensus 204 ~~ad~vV~AdG~~S 217 (520)
+++|.+|.|+|...
T Consensus 141 ~~~d~lViATGs~p 154 (472)
T PRK05976 141 IIPENLLIATGSRP 154 (472)
T ss_pred EEcCEEEEeCCCCC
Confidence 78999999999865
No 156
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.77 E-value=6.3e-08 Score=99.82 Aligned_cols=145 Identities=20% Similarity=0.207 Sum_probs=83.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDG 132 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 132 (520)
...+|+|||||||||++|..|.++|++|+++||.... .|........+.- .--+.+.+ ......
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~i----GGlW~y~~~~~~~-~ss~Y~~l-----------~tn~pK 68 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDI----GGLWKYTENVEVV-HSSVYKSL-----------RTNLPK 68 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCc----cceEeecCccccc-ccchhhhh-----------hccCCh
Confidence 4568999999999999999999999999999998632 2222111111100 00000000 000000
Q ss_pred ccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCe--EEEece-EEEEEeeC-CeEEEEEEEeCCCcEEEEecCe
Q 009994 133 KSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNV--RLEQGT-VTSLLEEN-GTIKGVQYKTKDGQELRAYAPL 208 (520)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v--~i~~~~-v~~~~~~~-~~v~gv~v~~~~g~~~~~~ad~ 208 (520)
+ ...|+.-.+......+.-++..+.+.|...|+.. ++ .+++++ |+.+.... +.. .|...+..+...+.-+|.
T Consensus 69 e--~~~~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F-~l~~~i~f~~~v~~v~~~~~gkW-~V~~~~~~~~~~~~ifd~ 144 (448)
T KOG1399|consen 69 E--MMGYSDFPFPERDPRYFPSHREVLEYLRDYAKHF-DLLKMINFNTEVVRVDSIDKGKW-RVTTKDNGTQIEEEIFDA 144 (448)
T ss_pred h--hhcCCCCCCcccCcccCCCHHHHHHHHHHHHHhc-ChhhheEecccEEEEeeccCCce-eEEEecCCcceeEEEeeE
Confidence 0 0112111111111222344558999999999876 44 567776 88888776 554 365555443223445999
Q ss_pred EEEecCCcc
Q 009994 209 TIVCDGCFS 217 (520)
Q Consensus 209 vV~AdG~~S 217 (520)
||.|+|-+.
T Consensus 145 VvVctGh~~ 153 (448)
T KOG1399|consen 145 VVVCTGHYV 153 (448)
T ss_pred EEEcccCcC
Confidence 999999883
No 157
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.74 E-value=1.3e-07 Score=101.13 Aligned_cols=113 Identities=23% Similarity=0.364 Sum_probs=77.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEEC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKD 131 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 131 (520)
...+||+||||||+|+++|..|++.|++|+|+|+.. |..+.. ..++. +
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~-------GG~~~~-------~~~~~------------------~ 256 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERF-------GGQVLD-------TMGIE------------------N 256 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-------CCeeec-------cCccc------------------c
Confidence 457999999999999999999999999999997541 211100 00000 0
Q ss_pred CccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEE
Q 009994 132 GKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTI 210 (520)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV 210 (520)
...++ .....++.+.|.+.+++. +++++.++ |+++..+++. ..+...+|++ +++|.||
T Consensus 257 ----~~~~~-----------~~~~~~l~~~l~~~~~~~-gv~i~~~~~V~~I~~~~~~---~~V~~~~g~~--i~a~~vV 315 (517)
T PRK15317 257 ----FISVP-----------ETEGPKLAAALEEHVKEY-DVDIMNLQRASKLEPAAGL---IEVELANGAV--LKAKTVI 315 (517)
T ss_pred ----cCCCC-----------CCCHHHHHHHHHHHHHHC-CCEEEcCCEEEEEEecCCe---EEEEECCCCE--EEcCEEE
Confidence 00000 012235778888888887 69998875 9888776543 3444566654 6699999
Q ss_pred EecCCcc
Q 009994 211 VCDGCFS 217 (520)
Q Consensus 211 ~AdG~~S 217 (520)
.|+|..+
T Consensus 316 iAtG~~~ 322 (517)
T PRK15317 316 LATGARW 322 (517)
T ss_pred ECCCCCc
Confidence 9999975
No 158
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.74 E-value=5.9e-08 Score=110.07 Aligned_cols=164 Identities=19% Similarity=0.258 Sum_probs=88.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCC-ce-e---ee--eecc--chHH-HHHhc-----Cch--h
Q 009994 51 NGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD-RI-V---GE--LLQP--GGYL-KLVEL-----GLE--D 113 (520)
Q Consensus 51 ~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~-~~-~---g~--~l~~--~~~~-~l~~l-----Gl~--~ 113 (520)
++.++||+|||||.|||++|+.+++.|.+|+|+||...... .. . |. .+.+ ...+ .++.. |+. +
T Consensus 10 ~~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~~~sg~~~~g~~gi~~~~~~~~ds~e~~~~Dt~~~g~gl~d~~ 89 (897)
T PRK13800 10 LRLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVRHSGALAMGMDGVNNAVIPGKAEPEDYVAEITRANDGIVNQR 89 (897)
T ss_pred ceeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccccCCCcccCCchhhhcccCCCccCHHHHHHHHHhhcCCCCCHH
Confidence 35678999999999999999999999999999999863211 00 0 10 0111 0111 11110 110 0
Q ss_pred HHhh--------cccceeceEEEEE--CCccccccCCCc-CCC-CCccceeecchHHHHHHHHHHHcC---CCeEEEece
Q 009994 114 CVEE--------IDAQQVLGYALFK--DGKSTRLSYPLE-KFH-ADVSGRSFHNGRFIQRMREKAASL---PNVRLEQGT 178 (520)
Q Consensus 114 ~l~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~-~~~~~~~~~~~~l~~~L~~~~~~~---~~v~i~~~~ 178 (520)
.+.. +..-...|..+.. +|+.....+... .+. ....| ..+...|.+.+.+. .++.+....
T Consensus 90 ~v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~~~~~~~~~~~~tG-----~~i~~~L~~~l~~~~~~~~i~~~~~~ 164 (897)
T PRK13800 90 TVYQTATRGFAMVQRLERYGVKFEKDEHGEYAVRRVHRSGSYVLPMPEG-----KDVKKALYRVLRQRSMRERIRIENRL 164 (897)
T ss_pred HHHHHHHhHHHHHHHHHHcCCceeeCCCCCEeeeeeccCCCccccCCCc-----hhHHHHHHHHHHHhhhcCCcEEEece
Confidence 0100 0000111222211 111000000000 000 00011 12444555554433 267777776
Q ss_pred -EEEEEeeCCeEEEEEEEe-CCCcEEEEecCeEEEecCCcchh
Q 009994 179 -VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNL 219 (520)
Q Consensus 179 -v~~~~~~~~~v~gv~v~~-~~g~~~~~~ad~vV~AdG~~S~v 219 (520)
++++..+++++.||.+.+ .+|+.+.++|+.||.|+|+++.+
T Consensus 165 ~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 207 (897)
T PRK13800 165 MPVRVLTEGGRAVGAAALNTRTGEFVTVGAKAVILATGPCGRL 207 (897)
T ss_pred eeEEEEeeCCEEEEEEEEecCCCcEEEEECCEEEECCCccccC
Confidence 788887788999998754 57887889999999999999864
No 159
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.74 E-value=7.9e-08 Score=99.30 Aligned_cols=136 Identities=23% Similarity=0.329 Sum_probs=76.8
Q ss_pred EEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCce--ee--e-ee-ccchH-HHHHhc--------------CchhHHh
Q 009994 58 IIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRI--VG--E-LL-QPGGY-LKLVEL--------------GLEDCVE 116 (520)
Q Consensus 58 ~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~--~g--~-~l-~~~~~-~~l~~l--------------Gl~~~l~ 116 (520)
+|||||++|+++|+.|+++|.+|+|+||.+...... .| . .+ +.... +..+.. +..+.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 599999999999999999999999999986532211 01 0 00 10001 111111 1111110
Q ss_pred hcccceeceEEEEE--CCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEE
Q 009994 117 EIDAQQVLGYALFK--DGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQ 193 (520)
Q Consensus 117 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~ 193 (520)
-. ...+..+.. .+. .+|. .-....+.+.|.+.+++. +++++.++ |+++.++++. +.
T Consensus 81 ~~---~~~Gv~~~~~~~g~----~~p~----------~~~a~~v~~~L~~~l~~~-gv~i~~~~~V~~i~~~~~~---~~ 139 (400)
T TIGR00275 81 FF---ESLGLELKVEEDGR----VFPC----------SDSAADVLDALLNELKEL-GVEILTNSKVKSIKKDDNG---FG 139 (400)
T ss_pred HH---HHcCCeeEEecCCE----eECC----------CCCHHHHHHHHHHHHHHC-CCEEEeCCEEEEEEecCCe---EE
Confidence 00 001111110 000 0110 012346788888888877 78998886 8888776553 33
Q ss_pred EEeCCCcEEEEecCeEEEecCCcc
Q 009994 194 YKTKDGQELRAYAPLTIVCDGCFS 217 (520)
Q Consensus 194 v~~~~g~~~~~~ad~vV~AdG~~S 217 (520)
++. +++ ++.+|.||.|+|.+|
T Consensus 140 v~~-~~~--~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 140 VET-SGG--EYEADKVILATGGLS 160 (400)
T ss_pred EEE-CCc--EEEcCEEEECCCCcc
Confidence 334 343 367999999999987
No 160
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.74 E-value=3.8e-08 Score=103.95 Aligned_cols=139 Identities=18% Similarity=0.176 Sum_probs=75.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHH---HHHhcCchhHHhhcccceeceEEEE
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYL---KLVELGLEDCVEEIDAQQVLGYALF 129 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~---~l~~lGl~~~l~~~~~~~~~~~~~~ 129 (520)
.+|||+||||||+|+.+|..|++.|.+|+|+|+.+. ..|..++.+.+. .+....+.+.+... ...+...
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~----~GG~c~n~gciP~K~l~~~a~~~~~~~~~---~~~g~~~- 74 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYST----LGGVCLNVGCIPSKALLHVAKVIEEAKAL---AEHGIVF- 74 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCc----ccccccCCCcccHHHHHHHHHHHHHHhhh---hhcCccc-
Confidence 469999999999999999999999999999998642 223333333321 12212222222111 0011110
Q ss_pred ECCccccccCCCcCCCCCccceeecchH----HHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEe
Q 009994 130 KDGKSTRLSYPLEKFHADVSGRSFHNGR----FIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAY 205 (520)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~gv~v~~~~g~~~~~~ 205 (520)
.. ..++... ..-.+.. +...+.+.+++. +++++.+++..+ +.. .|++...+|+..+++
T Consensus 75 -~~----~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-gV~~~~g~a~~~--~~~---~v~v~~~~g~~~~~~ 136 (471)
T PRK06467 75 -GE----PKIDIDK-------MRARKEKVVKQLTGGLAGMAKGR-KVTVVNGLGKFT--GGN---TLEVTGEDGKTTVIE 136 (471)
T ss_pred -CC----CCcCHHH-------HHHHHHHHHHHHHHHHHHHHHhC-CCEEEEEEEEEc--cCC---EEEEecCCCceEEEE
Confidence 00 0000000 0000111 222233334444 899999885533 233 355656667555678
Q ss_pred cCeEEEecCCcc
Q 009994 206 APLTIVCDGCFS 217 (520)
Q Consensus 206 ad~vV~AdG~~S 217 (520)
+|.+|.|+|...
T Consensus 137 ~d~lViATGs~p 148 (471)
T PRK06467 137 FDNAIIAAGSRP 148 (471)
T ss_pred cCEEEEeCCCCC
Confidence 999999999754
No 161
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.73 E-value=3.3e-06 Score=89.23 Aligned_cols=60 Identities=28% Similarity=0.354 Sum_probs=44.9
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCcee------ee----------eeccchHHHHHhcCchhHH
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV------GE----------LLQPGGYLKLVELGLEDCV 115 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~------g~----------~l~~~~~~~l~~lGl~~~l 115 (520)
+|+|||||++||++|+.|++.|++|+|+|++.....+.. |. ...++..+.++++|+.+.+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~ 76 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNL 76 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccc
Confidence 589999999999999999999999999999865432211 11 0124456778888987654
No 162
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.73 E-value=4.2e-08 Score=103.62 Aligned_cols=36 Identities=39% Similarity=0.517 Sum_probs=33.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
+.+|||+||||||+|+++|..|++.|.+|+|+||..
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~ 38 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYR 38 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence 456999999999999999999999999999999964
No 163
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.71 E-value=1.3e-07 Score=95.75 Aligned_cols=63 Identities=21% Similarity=0.376 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCC-eEEEEEEEeCCCcEEEEecCeEEEecCCcchh
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEENG-TIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 219 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~-~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~v 219 (520)
.+...|.+.+++.|+|+++++. +.++..+++ .+.||.+...+++..+++|+.||.|+|+.+.+
T Consensus 134 ~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~l 198 (518)
T COG0029 134 EIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGL 198 (518)
T ss_pred HHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCccc
Confidence 4788999999999999999997 899988887 56689887765566778999999999998754
No 164
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.71 E-value=5.4e-08 Score=102.69 Aligned_cols=33 Identities=33% Similarity=0.507 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~ 86 (520)
+|||+||||||+|+++|..++++|.+|+|+|+.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~ 35 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGR 35 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 589999999999999999999999999999974
No 165
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.71 E-value=1.2e-07 Score=101.99 Aligned_cols=113 Identities=23% Similarity=0.306 Sum_probs=73.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDG 132 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 132 (520)
+.|||+||||||||+++|..|++.|++|+|+|+... .|...... .+
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~-----GG~~~~~~------------~i----------------- 48 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDF-----GGQITITS------------EV----------------- 48 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC-----CceEEecc------------cc-----------------
Confidence 358999999999999999999999999999998631 11110000 00
Q ss_pred ccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEe
Q 009994 133 KSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVC 212 (520)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~A 212 (520)
..++.. .......+.+.+++.+++. ++++..++|+++..+++. ..+...+|+ +.++.+|.|
T Consensus 49 ----~~~pg~--------~~~~~~~l~~~l~~~~~~~-gv~~~~~~V~~i~~~~~~---~~V~~~~g~---~~a~~lVlA 109 (555)
T TIGR03143 49 ----VNYPGI--------LNTTGPELMQEMRQQAQDF-GVKFLQAEVLDVDFDGDI---KTIKTARGD---YKTLAVLIA 109 (555)
T ss_pred ----ccCCCC--------cCCCHHHHHHHHHHHHHHc-CCEEeccEEEEEEecCCE---EEEEecCCE---EEEeEEEEC
Confidence 001100 0112235667777777776 788877778887765432 234444453 558999999
Q ss_pred cCCcch
Q 009994 213 DGCFSN 218 (520)
Q Consensus 213 dG~~S~ 218 (520)
+|++..
T Consensus 110 TGa~p~ 115 (555)
T TIGR03143 110 TGASPR 115 (555)
T ss_pred CCCccC
Confidence 998754
No 166
>PLN02487 zeta-carotene desaturase
Probab=98.71 E-value=5.6e-06 Score=88.63 Aligned_cols=64 Identities=22% Similarity=0.299 Sum_probs=48.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCcee------ee------e----eccchHHHHHhcCchhHHh
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV------GE------L----LQPGGYLKLVELGLEDCVE 116 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~------g~------~----l~~~~~~~l~~lGl~~~l~ 116 (520)
+..+|+|||||++||++|+.|+++|++|+|+|+.+....... |. . ..++..+.++++|+.+.+.
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~ 153 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLL 153 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCccccc
Confidence 446999999999999999999999999999999875432111 11 1 2355778899999986653
No 167
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.70 E-value=1.6e-07 Score=96.11 Aligned_cols=115 Identities=23% Similarity=0.293 Sum_probs=73.2
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCc-----eeee---eeccchHHHHHhcCchh-HHhhcccceece
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDR-----IVGE---LLQPGGYLKLVELGLED-CVEEIDAQQVLG 125 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~-----~~g~---~l~~~~~~~l~~lGl~~-~l~~~~~~~~~~ 125 (520)
.||+|||||++|+.+|+.|+++|++|+|+|+++..... ..+. ....++...++..|++. .++..+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~~ei~~lg~----- 75 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLKTEMRQLSS----- 75 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHHHHHhhcCe-----
Confidence 48999999999999999999999999999987542110 0011 12334456666777663 3333211
Q ss_pred EEEEECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeceEEEEE
Q 009994 126 YALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLL 183 (520)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~ 183 (520)
. ........ ..+ ......++|..+.+.+.+.+++++++++..+.|.++.
T Consensus 76 l-~~~~ad~~--~Ip------agg~~~vDR~lF~~~L~~qLe~~pnItviq~eV~dL~ 124 (433)
T TIGR00137 76 L-IITAADRH--AVP------AGGALAVDRGIFSRSLTEQVASHPNVTLIREEVTEIP 124 (433)
T ss_pred e-eeehhhhh--CCC------CCceEEehHHHHHHHHHHHHHhCCCcEEEeeeeEEEc
Confidence 1 11111111 111 1113467899999999999999999988876666554
No 168
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.69 E-value=1.9e-07 Score=98.57 Aligned_cols=35 Identities=31% Similarity=0.484 Sum_probs=32.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
.+|||+||||||+|+++|..|+++|.+|+|+||..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 46999999999999999999999999999999863
No 169
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.69 E-value=1.9e-06 Score=90.85 Aligned_cols=60 Identities=32% Similarity=0.367 Sum_probs=45.8
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCce------------eee----eeccchHHHHHhcCchhHH
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRI------------VGE----LLQPGGYLKLVELGLEDCV 115 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~------------~g~----~l~~~~~~~l~~lGl~~~l 115 (520)
+|+|||||++||++|+.|+++|++|+|+|+++....+. .|. ..+++..+.++++|+.+.+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~ 76 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDRL 76 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccce
Confidence 58999999999999999999999999999986432211 111 1246777889999986543
No 170
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.68 E-value=1.7e-07 Score=97.73 Aligned_cols=38 Identities=34% Similarity=0.451 Sum_probs=35.0
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHhhCCCe-EEEEccCCC
Q 009994 51 NGSPTDVIIVGAGVAGAALAHTLGKDGRR-VHVIERDVT 88 (520)
Q Consensus 51 ~~~~~dV~IVGaG~aGl~~A~~La~~G~~-V~v~Er~~~ 88 (520)
.+.++||+|||||++|+++|..|.+.|++ ++|+||+..
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~ 43 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDD 43 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCC
Confidence 35678999999999999999999999999 999999963
No 171
>PLN02507 glutathione reductase
Probab=98.68 E-value=9.6e-08 Score=101.42 Aligned_cols=149 Identities=18% Similarity=0.220 Sum_probs=79.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCC-----CCceeeeeeccchH--HHH-HhcCchhHHhhccccee
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTE-----PDRIVGELLQPGGY--LKL-VELGLEDCVEEIDAQQV 123 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~-----~~~~~g~~l~~~~~--~~l-~~lGl~~~l~~~~~~~~ 123 (520)
..+|||+||||||+|+.+|..+++.|.+|+|+|+...+ .....|..++.+.+ +.| ....+.+.+... ..
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~---~~ 99 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDA---KN 99 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHH---Hh
Confidence 45799999999999999999999999999999973111 11233444554433 122 111222222111 00
Q ss_pred ceEEEEECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEE
Q 009994 124 LGYALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELR 203 (520)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~gv~v~~~~g~~~~ 203 (520)
.|+.. . .. ..++....... ..-...++...+.+.+.+. ++++..+++..+. .. .+++...+|++.+
T Consensus 100 ~G~~~--~-~~--~~id~~~~~~~---~~~~~~~~~~~~~~~l~~~-gV~~i~g~a~~vd--~~---~v~V~~~~g~~~~ 165 (499)
T PLN02507 100 YGWEI--N-EK--VDFNWKKLLQK---KTDEILRLNGIYKRLLANA-GVKLYEGEGKIVG--PN---EVEVTQLDGTKLR 165 (499)
T ss_pred cCccc--C-CC--CccCHHHHHHH---HHHHHHHHHHHHHHHHHhC-CcEEEEEEEEEec--CC---EEEEEeCCCcEEE
Confidence 11110 0 00 00000000000 0000011233333444444 8999998876553 23 2556667777666
Q ss_pred EecCeEEEecCCcc
Q 009994 204 AYAPLTIVCDGCFS 217 (520)
Q Consensus 204 ~~ad~vV~AdG~~S 217 (520)
+.+|.||.|+|...
T Consensus 166 ~~~d~LIIATGs~p 179 (499)
T PLN02507 166 YTAKHILIATGSRA 179 (499)
T ss_pred EEcCEEEEecCCCC
Confidence 88999999999765
No 172
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.68 E-value=6.5e-07 Score=83.58 Aligned_cols=34 Identities=44% Similarity=0.620 Sum_probs=31.9
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCC
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTE 89 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~ 89 (520)
+|+|||+|++|+++|+.|+..|++|+|+||....
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~Gv 36 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGV 36 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCc
Confidence 6999999999999999999999999999998654
No 173
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.65 E-value=1.5e-07 Score=89.60 Aligned_cols=162 Identities=20% Similarity=0.326 Sum_probs=98.0
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCc--eeeeeeccchHHHHHhcCchhHHhhcccc-----eece---
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDR--IVGELLQPGGYLKLVELGLEDCVEEIDAQ-----QVLG--- 125 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~--~~g~~l~~~~~~~l~~lGl~~~l~~~~~~-----~~~~--- 125 (520)
.|+|||+|.|||+++..+-..|-.|+|+|+....... .....++..+.+..+.+++.|..+-.... ...+
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e 90 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE 90 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence 7999999999999999999988889999998654332 23345666666666666665443221100 0000
Q ss_pred ------------EEEEECCc-ccc---------ccCCCc--CCCCCccceeecchHHHHHHHHHHHcCCC-eEEEece-E
Q 009994 126 ------------YALFKDGK-STR---------LSYPLE--KFHADVSGRSFHNGRFIQRMREKAASLPN-VRLEQGT-V 179 (520)
Q Consensus 126 ------------~~~~~~~~-~~~---------~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-v~i~~~~-v 179 (520)
..+. .++ ... ...|.. ...+.+++.-+- ..|...|.+.+.+.|. +++..++ |
T Consensus 91 Lm~~La~~S~~AvewL-~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~-~~L~~~l~k~as~~pe~~ki~~nskv 168 (477)
T KOG2404|consen 91 LMEKLAANSASAVEWL-RGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIV-KALSTRLKKKASENPELVKILLNSKV 168 (477)
T ss_pred HHHHHHhcCHHHHHHH-hhhcccchHHHHHhcCCCCCcccccCCCCCCchHHH-HHHHHHHHHhhhcChHHHhhhhccee
Confidence 0000 000 000 000100 011112222111 1234444444444443 4565555 9
Q ss_pred EEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcchh
Q 009994 180 TSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 219 (520)
Q Consensus 180 ~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~v 219 (520)
+++.+++++|.||.+.+.+|+...+.++-||.|+|+++.-
T Consensus 169 v~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~ys 208 (477)
T KOG2404|consen 169 VDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGYS 208 (477)
T ss_pred eeeecCCCeEEEEEEEcCCCCccceecCceEEecCCcCcC
Confidence 9999999999999999999988778899999999999854
No 174
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.64 E-value=1.9e-05 Score=83.57 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=43.8
Q ss_pred cEEEECCCHHHHHHHHHHhhC------CCeEEEEccCCCCCCcee-----ee-------ee---ccchHHHHHhcCchhH
Q 009994 56 DVIIVGAGVAGAALAHTLGKD------GRRVHVIERDVTEPDRIV-----GE-------LL---QPGGYLKLVELGLEDC 114 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~------G~~V~v~Er~~~~~~~~~-----g~-------~l---~~~~~~~l~~lGl~~~ 114 (520)
+|+|||||++||++|+.|++. |.+|+|+|+++....+.. |. .+ ++...+.++++|+.+.
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~~~ 82 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLEEE 82 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHcCCccc
Confidence 699999999999999999986 489999999876543322 11 11 2344577788888754
Q ss_pred H
Q 009994 115 V 115 (520)
Q Consensus 115 l 115 (520)
+
T Consensus 83 ~ 83 (463)
T PRK12416 83 M 83 (463)
T ss_pred e
Confidence 4
No 175
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.64 E-value=3.4e-07 Score=97.84 Aligned_cols=113 Identities=25% Similarity=0.389 Sum_probs=75.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEEC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKD 131 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 131 (520)
...+||+||||||||+++|..|++.|++|+|+|... |..+. ...++. . +
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~-------GG~~~-------~~~~~~----~----------~--- 258 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERI-------GGQVK-------DTVGIE----N----------L--- 258 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-------CCccc-------cCcCcc----c----------c---
Confidence 557999999999999999999999999999997431 11110 000000 0 0
Q ss_pred CccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEE
Q 009994 132 GKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTI 210 (520)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV 210 (520)
...+ .....++.+.+.+.+++. +++++.++ |+++..+++. +.+...+|+. +.+|.+|
T Consensus 259 -----~~~~-----------~~~~~~l~~~l~~~l~~~-gv~i~~~~~V~~I~~~~~~---~~v~~~~g~~--i~~d~lI 316 (515)
T TIGR03140 259 -----ISVP-----------YTTGSQLAANLEEHIKQY-PIDLMENQRAKKIETEDGL---IVVTLESGEV--LKAKSVI 316 (515)
T ss_pred -----cccC-----------CCCHHHHHHHHHHHHHHh-CCeEEcCCEEEEEEecCCe---EEEEECCCCE--EEeCEEE
Confidence 0000 012245677777777776 79998876 8888765543 3445566653 6699999
Q ss_pred EecCCcc
Q 009994 211 VCDGCFS 217 (520)
Q Consensus 211 ~AdG~~S 217 (520)
.|+|...
T Consensus 317 lAtGa~~ 323 (515)
T TIGR03140 317 VATGARW 323 (515)
T ss_pred ECCCCCc
Confidence 9999864
No 176
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.64 E-value=2.9e-07 Score=96.71 Aligned_cols=33 Identities=27% Similarity=0.508 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~ 86 (520)
+|||+||||||+|+++|+.+++.|.+|+|+|+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 589999999999999999999999999999985
No 177
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.64 E-value=2.7e-07 Score=96.51 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEee--CCeEEEEEEEeCCCcEEEEecCeEEEecCCcchhhhhh
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEE--NGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLRRSL 223 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~--~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~vR~~l 223 (520)
.+.+.|.+.+++. +++++.++ |+++..+ ++.+++|... .++ .+++|+.||.|+|.++..++.+
T Consensus 124 ~l~~~L~~~a~~~-Gv~i~~~~~v~~l~~~~~~g~v~gv~~~-~~~--~~i~ak~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 124 ALTNALYSSAERL-GVEIRYGIAVDRIPPEAFDGAHDGPLTT-VGT--HRITTQALVLAAGGLGANRDWL 189 (432)
T ss_pred HHHHHHHHHHHHc-CCEEEeCCEEEEEEecCCCCeEEEEEEc-CCc--EEEEcCEEEEcCCCcccCHHHH
Confidence 4788888888887 79999887 9999876 5667776652 222 3577999999999998766544
No 178
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.62 E-value=3.2e-07 Score=97.18 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEcc
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIER 85 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er 85 (520)
.+|||+||||||+|+++|..+++.|.+|+|+|+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 368999999999999999999999999999998
No 179
>PRK13748 putative mercuric reductase; Provisional
Probab=98.62 E-value=4.4e-07 Score=98.29 Aligned_cols=34 Identities=38% Similarity=0.549 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~ 86 (520)
.+|||+||||||+|+++|..|+++|.+|+|+|+.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4699999999999999999999999999999986
No 180
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.61 E-value=4.7e-07 Score=95.02 Aligned_cols=35 Identities=43% Similarity=0.608 Sum_probs=32.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
++|||+||||||+|+++|..|+++|.+|+|+|+.+
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~ 36 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN 36 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence 35899999999999999999999999999999974
No 181
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.59 E-value=3.7e-06 Score=84.74 Aligned_cols=41 Identities=41% Similarity=0.549 Sum_probs=36.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDR 92 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~ 92 (520)
....||||||||.+||++|+.|.+.|++|+|+|.+.....|
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR 45 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGR 45 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCce
Confidence 45689999999999999999999999999999998765443
No 182
>PRK06116 glutathione reductase; Validated
Probab=98.59 E-value=1.7e-07 Score=98.59 Aligned_cols=34 Identities=32% Similarity=0.517 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~ 86 (520)
.+|||+||||||+|+++|..|+++|.+|+|+|+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 3699999999999999999999999999999985
No 183
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.58 E-value=2e-07 Score=87.46 Aligned_cols=164 Identities=17% Similarity=0.221 Sum_probs=97.0
Q ss_pred CcEEEECCCHHHHHHHHHHhhCC------CeEEEEccCCCCCC--ceee----eeeccchHHHHHhc------CchhHHh
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDG------RRVHVIERDVTEPD--RIVG----ELLQPGGYLKLVEL------GLEDCVE 116 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G------~~V~v~Er~~~~~~--~~~g----~~l~~~~~~~l~~l------Gl~~~l~ 116 (520)
..|+|||||+.|.++|++|++++ ..|+|+|...-... -..+ ..-++.-+..|..+ ++.++++
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsdeyd 90 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDEYD 90 (380)
T ss_pred eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHhhc
Confidence 68999999999999999999998 89999998742211 0111 11122211222211 3333333
Q ss_pred hcccc---eeceEEEEEC---CccccccCC-----------CcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeceE
Q 009994 117 EIDAQ---QVLGYALFKD---GKSTRLSYP-----------LEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTV 179 (520)
Q Consensus 117 ~~~~~---~~~~~~~~~~---~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~v 179 (520)
..... ....+..-.+ .+....... ....+.......+|...|.+.++..+.+.++|++..|+|
T Consensus 91 GvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~Gkv 170 (380)
T KOG2852|consen 91 GVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVFGKV 170 (380)
T ss_pred CcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEEEeee
Confidence 32111 1111111111 111000000 001112223346888899999999999998999999999
Q ss_pred EEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcch
Q 009994 180 TSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 218 (520)
Q Consensus 180 ~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~ 218 (520)
.++..+..++.+|-.....+.......+.+|.+.|.++.
T Consensus 171 ~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 171 KEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred EEeecccccccccchhhhcCceEEeeeeEEEEecCCCch
Confidence 999766677665554433344455678999999999974
No 184
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.58 E-value=1.5e-06 Score=83.36 Aligned_cols=38 Identities=39% Similarity=0.708 Sum_probs=34.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTE 89 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~ 89 (520)
..++||+|||||.|||.+|..|+..|.+|+|+|+..+.
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeq 40 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQ 40 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccc
Confidence 45689999999999999999999999999999998654
No 185
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.57 E-value=1.6e-06 Score=91.39 Aligned_cols=60 Identities=15% Similarity=0.182 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEee--C--CeEEEEEEEeCCC-c-EEEEecCeEEEecCCcc
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEE--N--GTIKGVQYKTKDG-Q-ELRAYAPLTIVCDGCFS 217 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~--~--~~v~gv~v~~~~g-~-~~~~~ad~vV~AdG~~S 217 (520)
.+..-|.+.++++ ||+++.++ |+++..+ + +.|+++.+...+. + .....+|+||.+.|...
T Consensus 227 SLV~PL~~~Le~~-GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t 293 (576)
T PRK13977 227 SLVLPLIKYLEDH-GVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSIT 293 (576)
T ss_pred HHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCc
Confidence 4677788888888 89999998 9998874 3 4688888865322 2 22346899999999764
No 186
>PRK07208 hypothetical protein; Provisional
Probab=98.55 E-value=1.2e-06 Score=93.06 Aligned_cols=38 Identities=39% Similarity=0.476 Sum_probs=34.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTE 89 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~ 89 (520)
+...||+|||||++||++|+.|+++|++|+|+|+.+..
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~ 39 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVV 39 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 45679999999999999999999999999999998654
No 187
>PRK10262 thioredoxin reductase; Provisional
Probab=98.55 E-value=1.2e-06 Score=88.05 Aligned_cols=114 Identities=16% Similarity=0.247 Sum_probs=71.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEEC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKD 131 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 131 (520)
+..+||+||||||+|+++|..|+++|++|+++|+.. . |..+... .. +
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~-~-----gg~~~~~-------------------~~-----~--- 50 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME-K-----GGQLTTT-------------------TE-----V--- 50 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeec-C-----CCceecC-------------------ce-----E---
Confidence 567899999999999999999999999999999642 1 1111000 00 0
Q ss_pred CccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEE
Q 009994 132 GKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIV 211 (520)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~ 211 (520)
..+|.. . ..++-..+.+.+.+.+... ++.++.++|+++...++. +++..+++ .+.+|.||.
T Consensus 51 -----~~~~~~-----~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~~~~---~~v~~~~~---~~~~d~vil 111 (321)
T PRK10262 51 -----ENWPGD-----P--NDLTGPLLMERMHEHATKF-ETEIIFDHINKVDLQNRP---FRLTGDSG---EYTCDALII 111 (321)
T ss_pred -----CCCCCC-----C--CCCCHHHHHHHHHHHHHHC-CCEEEeeEEEEEEecCCe---EEEEecCC---EEEECEEEE
Confidence 001100 0 0122234566677777666 567777777777665553 33433333 356999999
Q ss_pred ecCCcc
Q 009994 212 CDGCFS 217 (520)
Q Consensus 212 AdG~~S 217 (520)
|+|.+.
T Consensus 112 AtG~~~ 117 (321)
T PRK10262 112 ATGASA 117 (321)
T ss_pred CCCCCC
Confidence 999874
No 188
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.54 E-value=5.3e-07 Score=96.00 Aligned_cols=167 Identities=19% Similarity=0.276 Sum_probs=90.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceee------eeec-c-----chHHHHH-h-c----Cc--
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVG------ELLQ-P-----GGYLKLV-E-L----GL-- 111 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g------~~l~-~-----~~~~~l~-~-l----Gl-- 111 (520)
..++||||||||.|||.+|+.+++.|.+|+|+||.......... ..+. . .+.+.+. . . ++
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~d 83 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLGD 83 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcCC
Confidence 56799999999999999999999999999999998644322110 0110 0 0111110 0 0 01
Q ss_pred hhHHhhcccc--------eeceEEE--EECCccccccCCCcCCCCCccceeec--chHHHHHHHHHHHcCCCeEEEece-
Q 009994 112 EDCVEEIDAQ--------QVLGYAL--FKDGKSTRLSYPLEKFHADVSGRSFH--NGRFIQRMREKAASLPNVRLEQGT- 178 (520)
Q Consensus 112 ~~~l~~~~~~--------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~L~~~~~~~~~v~i~~~~- 178 (520)
.+.+...... ...+.-+ +.+|....-.+. ..+.....+.-. -..+...|.+.+.+..++++....
T Consensus 84 qd~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fg--g~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~ 161 (562)
T COG1053 84 QDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFG--GHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYF 161 (562)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccC--CcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhh
Confidence 0111110000 0001111 001110000000 000000000001 124778888888776567777776
Q ss_pred EEEEEeeCCe-EEEEEEEe-CCCcEEEEecCeEEEecCCcchhh
Q 009994 179 VTSLLEENGT-IKGVQYKT-KDGQELRAYAPLTIVCDGCFSNLR 220 (520)
Q Consensus 179 v~~~~~~~~~-v~gv~v~~-~~g~~~~~~ad~vV~AdG~~S~vR 220 (520)
++++..++++ +.|+...+ .+|+...++++-||.|+|+...+.
T Consensus 162 ~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g~~~ 205 (562)
T COG1053 162 VLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAGRLY 205 (562)
T ss_pred hhhheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCceEEE
Confidence 8998866544 77777655 668877888999999999988443
No 189
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.54 E-value=5e-07 Score=96.04 Aligned_cols=142 Identities=18% Similarity=0.205 Sum_probs=77.1
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCccc
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKST 135 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~~ 135 (520)
+|+|||||++||++|..|.+.|++|+++||++.. .|..-.....+- ..-.+.+.+. .+-...
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~i----GG~W~~~~~~~~-g~~~~y~sl~-------------~n~sk~ 64 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDI----GGLWRYTENPED-GRSSVYDSLH-------------TNTSKE 64 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSS----SGGGCHSTTCCC-SEGGGSTT-B--------------SS-GG
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCC----CccCeeCCcCCC-CccccccceE-------------EeeCch
Confidence 6999999999999999999999999999998632 121110000000 0000111100 000000
Q ss_pred cccCCCcCCCCC-ccceeecchHHHHHHHHHHHcCCCe--EEEece-EEEEEeeCCe--EEEEEEEe-CCCcEEEEecCe
Q 009994 136 RLSYPLEKFHAD-VSGRSFHNGRFIQRMREKAASLPNV--RLEQGT-VTSLLEENGT--IKGVQYKT-KDGQELRAYAPL 208 (520)
Q Consensus 136 ~~~~~~~~~~~~-~~~~~~~~~~l~~~L~~~~~~~~~v--~i~~~~-v~~~~~~~~~--v~gv~v~~-~~g~~~~~~ad~ 208 (520)
...|+ +++.+ ......++..+.+.|.+.++.. +. .+++++ |+++.+.++. ....++.. .+|+..+-..|.
T Consensus 65 ~~~fs--dfp~p~~~p~f~~~~~v~~Yl~~Ya~~f-~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~ 141 (531)
T PF00743_consen 65 MMAFS--DFPFPEDYPDFPSHSEVLEYLESYAEHF-GLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDA 141 (531)
T ss_dssp GSCCT--TS-HCCCCSSSEBHHHHHHHHHHHHHHT-TGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECE
T ss_pred HhcCC--CcCCCCCCCCCCCHHHHHHHHHHHHhhh-CCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCe
Confidence 11111 11110 0112357788999999999876 44 477787 9999875431 11233333 345545556899
Q ss_pred EEEecCCcch
Q 009994 209 TIVCDGCFSN 218 (520)
Q Consensus 209 vV~AdG~~S~ 218 (520)
||.|+|.++.
T Consensus 142 VvvatG~~~~ 151 (531)
T PF00743_consen 142 VVVATGHFSK 151 (531)
T ss_dssp EEEEE-SSSC
T ss_pred EEEcCCCcCC
Confidence 9999999873
No 190
>PRK14727 putative mercuric reductase; Provisional
Probab=98.51 E-value=8.1e-07 Score=94.13 Aligned_cols=36 Identities=33% Similarity=0.390 Sum_probs=33.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
+.++||+||||||+|+++|..|+++|.+|+|+||..
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~ 49 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGAD 49 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 456999999999999999999999999999999863
No 191
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.51 E-value=2.3e-07 Score=97.49 Aligned_cols=33 Identities=24% Similarity=0.485 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~ 86 (520)
+|||+||||||+|+++|..|++.|.+|+|+||.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~ 34 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK 34 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc
Confidence 589999999999999999999999999999986
No 192
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.51 E-value=1e-06 Score=92.39 Aligned_cols=35 Identities=34% Similarity=0.605 Sum_probs=33.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
++|||+||||||+|+++|..|++.|.+|+|+||..
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 36999999999999999999999999999999974
No 193
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.50 E-value=1.4e-06 Score=87.99 Aligned_cols=78 Identities=19% Similarity=0.198 Sum_probs=62.0
Q ss_pred cceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCeEEEecCCcc-hhhhhhcC
Q 009994 149 SGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFS-NLRRSLCK 225 (520)
Q Consensus 149 ~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~-~~g~~~~~~ad~vV~AdG~~S-~vR~~l~~ 225 (520)
.|.-++-+.|.+.|.+.+.+.+++++.+++ |+++.+.+++-+.|++++ .+|+..+++|++|+...|+.| ++-+..++
T Consensus 174 ~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi 253 (488)
T PF06039_consen 174 EGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGI 253 (488)
T ss_pred CCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCC
Confidence 455677788999999999988899999998 999999877645577655 567777899999999889888 45566665
Q ss_pred C
Q 009994 226 P 226 (520)
Q Consensus 226 ~ 226 (520)
+
T Consensus 254 ~ 254 (488)
T PF06039_consen 254 P 254 (488)
T ss_pred h
Confidence 4
No 194
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.48 E-value=2.4e-06 Score=84.67 Aligned_cols=61 Identities=25% Similarity=0.331 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCCCeEEEece-EEEEEee--CCeEEEEEEEeCCCc--EEEEecCeEEEecCCcch
Q 009994 158 FIQRMREKAASLPNVRLEQGT-VTSLLEE--NGTIKGVQYKTKDGQ--ELRAYAPLTIVCDGCFSN 218 (520)
Q Consensus 158 l~~~L~~~~~~~~~v~i~~~~-v~~~~~~--~~~v~gv~v~~~~g~--~~~~~ad~vV~AdG~~S~ 218 (520)
........+.+.++++++.++ |..+..+ ++++++|++.+.++. ...+.++.||.|.|+-..
T Consensus 194 ~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~T 259 (296)
T PF00732_consen 194 AATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGT 259 (296)
T ss_dssp HHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHH
T ss_pred hhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCC
Confidence 334444455566799999998 9999654 788999999998877 556779999999997543
No 195
>PLN02546 glutathione reductase
Probab=98.48 E-value=4.9e-07 Score=96.79 Aligned_cols=144 Identities=17% Similarity=0.156 Sum_probs=76.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC-----CCCCceeeeeeccchHH--HHHh-cCchhHHhhccccee
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV-----TEPDRIVGELLQPGGYL--KLVE-LGLEDCVEEIDAQQV 123 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~-----~~~~~~~g~~l~~~~~~--~l~~-lGl~~~l~~~~~~~~ 123 (520)
..+|||+||||||+|..+|..+++.|.+|+|+|+.. .......|..++.+.+. .|.. ..+.+.+.+. ..
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~---~~ 153 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEES---RG 153 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhh---hh
Confidence 346999999999999999999999999999999731 11223345556555542 2211 1112222211 11
Q ss_pred ceEEEEECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEE
Q 009994 124 LGYALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELR 203 (520)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~gv~v~~~~g~~~~ 203 (520)
.|+.. +....+.+. ... ....-...++...+.+.+++. +++++.++++.+.. .. |.+ +|+ +
T Consensus 154 ~g~~~---~~~~~~d~~--~~~---~~k~~~~~~l~~~~~~~l~~~-gV~~i~G~a~~vd~--~~---V~v---~G~--~ 214 (558)
T PLN02546 154 FGWKY---ETEPKHDWN--TLI---ANKNAELQRLTGIYKNILKNA-GVTLIEGRGKIVDP--HT---VDV---DGK--L 214 (558)
T ss_pred cCccc---CCCCCCCHH--HHH---HHHHHHHHHHHHHHHHHHHhC-CcEEEEeEEEEccC--CE---EEE---CCE--E
Confidence 11110 000000000 000 000000112344455555555 89999987665532 22 333 454 3
Q ss_pred EecCeEEEecCCcc
Q 009994 204 AYAPLTIVCDGCFS 217 (520)
Q Consensus 204 ~~ad~vV~AdG~~S 217 (520)
+.+|.||.|+|...
T Consensus 215 ~~~D~LVIATGs~p 228 (558)
T PLN02546 215 YTARNILIAVGGRP 228 (558)
T ss_pred EECCEEEEeCCCCC
Confidence 66999999999765
No 196
>PRK06370 mercuric reductase; Validated
Probab=98.47 E-value=4.3e-07 Score=95.95 Aligned_cols=35 Identities=40% Similarity=0.578 Sum_probs=32.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~ 86 (520)
+.+|||+||||||+|+++|..|++.|.+|+|+||.
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 37 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG 37 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 44699999999999999999999999999999986
No 197
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.47 E-value=4.2e-07 Score=96.06 Aligned_cols=33 Identities=27% Similarity=0.525 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~ 86 (520)
.|||+||||||+|+++|..|++.|.+|+|+|+.
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~ 33 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKE 33 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 389999999999999999999999999999983
No 198
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.47 E-value=1.2e-06 Score=92.74 Aligned_cols=34 Identities=29% Similarity=0.477 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~ 86 (520)
++|||+||||||+|+++|..|++.|.+|+|+|+.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 3589999999999999999999999999999986
No 199
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.46 E-value=2.6e-06 Score=90.29 Aligned_cols=57 Identities=14% Similarity=0.182 Sum_probs=45.8
Q ss_pred cCCCeEEEece-EEEEEeeC---CeEEEEEEEeC-CCcEEEEecCeEEEecCCcchhhhhhc
Q 009994 168 SLPNVRLEQGT-VTSLLEEN---GTIKGVQYKTK-DGQELRAYAPLTIVCDGCFSNLRRSLC 224 (520)
Q Consensus 168 ~~~~v~i~~~~-v~~~~~~~---~~v~gv~v~~~-~g~~~~~~ad~vV~AdG~~S~vR~~l~ 224 (520)
+.++++++.++ |++++.++ +++++|.+.+. +|+..+++|+.||.|.|+--..|-.|.
T Consensus 225 ~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~ 286 (544)
T TIGR02462 225 PSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVN 286 (544)
T ss_pred cCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHh
Confidence 45689999887 88988653 46889988875 688888999999999998877776664
No 200
>PTZ00058 glutathione reductase; Provisional
Probab=98.45 E-value=5e-07 Score=96.67 Aligned_cols=35 Identities=29% Similarity=0.547 Sum_probs=33.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~ 86 (520)
..+|||+||||||+|.++|..+++.|.+|+|+||.
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 46799999999999999999999999999999986
No 201
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.45 E-value=7.9e-07 Score=82.58 Aligned_cols=32 Identities=41% Similarity=0.699 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
||+|||||+||+++|..|++.|.+|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999999999998874
No 202
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.44 E-value=8.2e-07 Score=93.76 Aligned_cols=145 Identities=21% Similarity=0.270 Sum_probs=77.8
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHH---HHHhcCchhHHhhcccceeceEEEEECC
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYL---KLVELGLEDCVEEIDAQQVLGYALFKDG 132 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~---~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 132 (520)
||+|||||++|+.+|..|++.|.+|+|+||.. ..|..++.+.+. .+....+.+.+... ...|.... ..
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-----~gG~c~~~gciPsK~l~~~a~~~~~~~~~---~~~g~~~~-~~ 73 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG-----LGGAAVLTDCVPSKTLIATAEVRTELRRA---AELGIRFI-DD 73 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-----CCCcccccCCcchHHHHHHHHHHHHHHHH---HhCCcccc-cC
Confidence 79999999999999999999999999999864 233344433331 12111122222111 00111100 00
Q ss_pred ccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeceEEEEE--eeCCeEEEEEEEeCCCcEEEEecCeEE
Q 009994 133 KSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLL--EENGTIKGVQYKTKDGQELRAYAPLTI 210 (520)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~--~~~~~v~gv~v~~~~g~~~~~~ad~vV 210 (520)
+...+.++ ..... . ..+ ...+...+.+.+++. +++++.++++.+. .++. .+++.+.+|+..++.+|.||
T Consensus 74 ~~~~~~~~--~~~~~-~-~~~-~~~~~~~~~~~l~~~-gV~~~~g~~~~~~~~~~~~---~v~V~~~~g~~~~~~~d~lV 144 (466)
T PRK07845 74 GEARVDLP--AVNAR-V-KAL-AAAQSADIRARLERE-GVRVIAGRGRLIDPGLGPH---RVKVTTADGGEETLDADVVL 144 (466)
T ss_pred cccccCHH--HHHHH-H-HHH-HHHHHHHHHHHHHHC-CCEEEEEEEEEeecccCCC---EEEEEeCCCceEEEecCEEE
Confidence 00000000 00000 0 000 011223344555555 8999999866543 3334 35566667764567899999
Q ss_pred EecCCcch
Q 009994 211 VCDGCFSN 218 (520)
Q Consensus 211 ~AdG~~S~ 218 (520)
.|+|....
T Consensus 145 iATGs~p~ 152 (466)
T PRK07845 145 IATGASPR 152 (466)
T ss_pred EcCCCCCC
Confidence 99998753
No 203
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=4.3e-07 Score=92.78 Aligned_cols=143 Identities=21% Similarity=0.316 Sum_probs=89.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCC-Cceeeeeeccc----hHHHHHhcCc-h-hHHhhcccceece
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP-DRIVGELLQPG----GYLKLVELGL-E-DCVEEIDAQQVLG 125 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~-~~~~g~~l~~~----~~~~l~~lGl-~-~~l~~~~~~~~~~ 125 (520)
..|||+|||||-||+-+|++.+|.|.+++|+--+.+.- ..+|.-.+..- -++..+.||= - ...+.
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~-------- 74 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADK-------- 74 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhh--------
Confidence 35999999999999999999999999999998765321 11111111100 0111122221 0 00000
Q ss_pred EEEEECCccccccCCCcCCCCCcc----ceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCC-eEEEEEEEeCCCc
Q 009994 126 YALFKDGKSTRLSYPLEKFHADVS----GRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENG-TIKGVQYKTKDGQ 200 (520)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~-~v~gv~v~~~~g~ 200 (520)
..+.+..-+.+.+|. -...++..+...+++.++.++|..++++.|+++..+++ +|.||. +.+|.
T Consensus 75 ---------~~IQ~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~--t~~G~ 143 (621)
T COG0445 75 ---------AGIQFRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVV--TADGP 143 (621)
T ss_pred ---------cCCchhhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEE--eCCCC
Confidence 001111111111111 12456667888889999999999999999999988666 476665 56776
Q ss_pred EEEEecCeEEEecCCc
Q 009994 201 ELRAYAPLTIVCDGCF 216 (520)
Q Consensus 201 ~~~~~ad~vV~AdG~~ 216 (520)
. +.|+.||.++|.+
T Consensus 144 ~--~~a~aVVlTTGTF 157 (621)
T COG0445 144 E--FHAKAVVLTTGTF 157 (621)
T ss_pred e--eecCEEEEeeccc
Confidence 4 5699999999976
No 204
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.42 E-value=4.1e-07 Score=68.49 Aligned_cols=31 Identities=45% Similarity=0.633 Sum_probs=28.3
Q ss_pred EECCCHHHHHHHHHHhhCCCeEEEEccCCCC
Q 009994 59 IVGAGVAGAALAHTLGKDGRRVHVIERDVTE 89 (520)
Q Consensus 59 IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~ 89 (520)
|||||++||++|+.|++.|++|+|+||++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCccc
Confidence 8999999999999999999999999999754
No 205
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.41 E-value=8.9e-07 Score=93.72 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~ 86 (520)
+|||+||||||+|+.+|..+++.|.+|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 589999999999999999999999999999985
No 206
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.36 E-value=2.2e-06 Score=90.37 Aligned_cols=32 Identities=28% Similarity=0.556 Sum_probs=30.6
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
+|+||||||+|+++|..|++.|.+|+|+||..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 79999999999999999999999999999974
No 207
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.33 E-value=6.4e-06 Score=94.48 Aligned_cols=37 Identities=35% Similarity=0.558 Sum_probs=34.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
...+||+|||||||||++|+.|++.|++|+|+|+.+.
T Consensus 161 ~~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~ 197 (985)
T TIGR01372 161 NAHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPE 197 (985)
T ss_pred cccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 3468999999999999999999999999999999853
No 208
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.33 E-value=3.5e-06 Score=89.08 Aligned_cols=51 Identities=24% Similarity=0.403 Sum_probs=38.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhC-CCeEEEEccCCC--CC--CceeeeeeccchH
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKD-GRRVHVIERDVT--EP--DRIVGELLQPGGY 103 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~-G~~V~v~Er~~~--~~--~~~~g~~l~~~~~ 103 (520)
.+|||+||||||+|..+|..+++. |.+|+|+||... .+ ....|..++.+.+
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCi 57 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCV 57 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCc
Confidence 469999999999999999999996 999999998411 11 2344555665554
No 209
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.32 E-value=5.2e-06 Score=88.34 Aligned_cols=33 Identities=24% Similarity=0.500 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~ 86 (520)
.|||+||||||+|+++|..|+++|.+|+|+|+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 589999999999999999999999999999974
No 210
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.29 E-value=4.8e-06 Score=87.93 Aligned_cols=34 Identities=41% Similarity=0.624 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~ 86 (520)
.+|||+||||||+|+++|..|++.|.+|+|+|++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4599999999999999999999999999999984
No 211
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.26 E-value=4.8e-06 Score=88.02 Aligned_cols=33 Identities=33% Similarity=0.481 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
|||+||||||+|+++|..|++.|.+|+|+||..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 699999999999999999999999999999863
No 212
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.25 E-value=2.4e-05 Score=79.99 Aligned_cols=60 Identities=17% Similarity=0.252 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCc-ch
Q 009994 156 GRFIQRMREKAASLPNVRLEQG-TVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCF-SN 218 (520)
Q Consensus 156 ~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~-S~ 218 (520)
.++.+.|.+.+++. |+++..+ +|+++..+++++.+|.. .++...+++||.+|.|+|++ |.
T Consensus 263 ~RL~~aL~~~~~~~-Gg~il~g~~V~~i~~~~~~v~~V~t--~~g~~~~l~AD~vVLAaGaw~S~ 324 (419)
T TIGR03378 263 IRLEEALKHRFEQL-GGVMLPGDRVLRAEFEGNRVTRIHT--RNHRDIPLRADHFVLASGSFFSN 324 (419)
T ss_pred HHHHHHHHHHHHHC-CCEEEECcEEEEEEeeCCeEEEEEe--cCCccceEECCEEEEccCCCcCH
Confidence 46888899999988 6788888 49999888887766543 34423457799999999999 74
No 213
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.25 E-value=1.8e-05 Score=61.72 Aligned_cols=76 Identities=25% Similarity=0.426 Sum_probs=57.7
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCccc
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKST 135 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~~ 135 (520)
.|+|||||+.|+-+|..|++.|.+|+|+|+.+... + .+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~---------~---------~~------------------------ 38 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL---------P---------GF------------------------ 38 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS---------T---------TS------------------------
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh---------h---------hc------------------------
Confidence 48999999999999999999999999999985210 0 00
Q ss_pred cccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEE
Q 009994 136 RLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQY 194 (520)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v 194 (520)
...+...+.+.+++. |+++++++ +.++..+++++. |++
T Consensus 39 -------------------~~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~~~~-V~~ 77 (80)
T PF00070_consen 39 -------------------DPDAAKILEEYLRKR-GVEVHTNTKVKEIEKDGDGVE-VTL 77 (80)
T ss_dssp -------------------SHHHHHHHHHHHHHT-TEEEEESEEEEEEEEETTSEE-EEE
T ss_pred -------------------CHHHHHHHHHHHHHC-CCEEEeCCEEEEEEEeCCEEE-EEE
Confidence 113455556666666 89999998 999998887644 554
No 214
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.22 E-value=1.2e-05 Score=71.66 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=27.0
Q ss_pred EEECCCHHHHHHHHHHhhC-----CCeEEEEccCC
Q 009994 58 IIVGAGVAGAALAHTLGKD-----GRRVHVIERDV 87 (520)
Q Consensus 58 ~IVGaG~aGl~~A~~La~~-----G~~V~v~Er~~ 87 (520)
+|||+|++|++++..|.++ ..+|+|+|+..
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 5999999999999999987 57999999964
No 215
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.21 E-value=6.7e-06 Score=85.32 Aligned_cols=48 Identities=31% Similarity=0.439 Sum_probs=38.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchH
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGY 103 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~ 103 (520)
+.+||++||||||+|..+|..+++.|.+|.++|+.. ...|..++-+.+
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~----~lGGtCln~GCI 49 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE----RLGGTCLNVGCI 49 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC----CcCceEEeeCcc
Confidence 457999999999999999999999999999999984 223444554443
No 216
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.19 E-value=1.1e-05 Score=87.88 Aligned_cols=34 Identities=35% Similarity=0.452 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~ 86 (520)
.+|||+|||+||+|.++|..+++.|.+|+|+|++
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4799999999999999999999999999999975
No 217
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=98.19 E-value=6.1e-05 Score=71.51 Aligned_cols=217 Identities=19% Similarity=0.193 Sum_probs=113.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCC-------CeEEEEccCCCCCCce--eeeeeccc-----hHHHHHhcCch-----h
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDG-------RRVHVIERDVTEPDRI--VGELLQPG-----GYLKLVELGLE-----D 113 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G-------~~V~v~Er~~~~~~~~--~g~~l~~~-----~~~~l~~lGl~-----~ 113 (520)
+..+|+|||+|+.||++|+.+.+.+ .+|+|++-+..+...+ .+..+.+. +.+.-++++-. .
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AGl~~p~~~~~~~~~~~~~w~k~tf~~l~ 81 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAGLFRPDLSDGTPQEINRQWGKDTFNYLA 81 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccccccccceeecccCCCCcHHHHHHHHHHHHHHHH
Confidence 3568999999999999998888754 6899998776544322 22233333 24443333311 1
Q ss_pred HHhh------cccceeceEEEEECCccc--------cccCCCcC--------C------CCCccceeecchHHHHHHHHH
Q 009994 114 CVEE------IDAQQVLGYALFKDGKST--------RLSYPLEK--------F------HADVSGRSFHNGRFIQRMREK 165 (520)
Q Consensus 114 ~l~~------~~~~~~~~~~~~~~~~~~--------~~~~~~~~--------~------~~~~~~~~~~~~~l~~~L~~~ 165 (520)
.+.. .+.....++..+.. +.. .+-+.+.. + +.....+...-..+.+.|.++
T Consensus 82 ~l~rs~~a~~aGV~l~sg~~ls~~-e~~~~~~~~w~diV~~fr~l~e~EL~~f~~~~~~G~~~Tt~~sE~~~ylpyl~k~ 160 (342)
T KOG3923|consen 82 HLARSEEAGEAGVCLVSGHILSDS-ESLDDQQRSWGDIVYGFRDLTERELLGFPDYSTYGIHFTTYLSEGPKYLPYLKKR 160 (342)
T ss_pred HHhccccccccceEEeeeeeeccC-CCchhhhhhHHhhhhhhhcCCHHHhcCCCCccccceeEEEeeccchhhhHHHHHH
Confidence 1111 11112233333332 110 00000000 0 011112334456789999999
Q ss_pred HHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcchhhhhhcCCCCCCcccceeeEEeccCCC
Q 009994 166 AASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLENCQLP 245 (520)
Q Consensus 166 ~~~~~~v~i~~~~v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~ 245 (520)
+.+. |+++...+|.++.+-.. -.+|+||.|+|-.|. .|..+.. .+...|.++. +.
T Consensus 161 l~e~-Gvef~~r~v~~l~E~~~----------------~~~DVivNCtGL~a~---~L~gDd~--~yPiRGqVl~---V~ 215 (342)
T KOG3923|consen 161 LTEN-GVEFVQRRVESLEEVAR----------------PEYDVIVNCTGLGAG---KLAGDDD--LYPIRGQVLK---VD 215 (342)
T ss_pred HHhc-CcEEEEeeeccHHHhcc----------------CCCcEEEECCccccc---cccCCcc--eeeccceEEE---ee
Confidence 9987 78887777777653221 128999999998863 3433222 3445555553 23
Q ss_pred CCCceEEEecCCCcEEEEecCCCeEEEEEE-eC-CCCCCCCCchHHHHHHHHhc
Q 009994 246 FANHGHVILADPSPILFYPISSTEVRCLVD-VP-GQKVPSISNGEMANYLKAMV 297 (520)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~~ 297 (520)
.+..-+.++.+....+++|..++ ..+-. .. ++...+.+.++..+.+....
T Consensus 216 ApWvkhf~~~D~~~ty~iP~~~~--V~lGg~~Q~g~w~~ei~~~D~~dIl~rc~ 267 (342)
T KOG3923|consen 216 APWVKHFIYRDFSRTYIIPGTES--VTLGGTKQEGNWNLEITDEDRRDILERCC 267 (342)
T ss_pred CCceeEEEEecCCccEEecCCce--EEEccccccCcccCcCChhhHHHHHHHHH
Confidence 33445555655443345554433 22212 22 23334556666666666543
No 218
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.18 E-value=2.2e-06 Score=90.82 Aligned_cols=55 Identities=25% Similarity=0.364 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCC
Q 009994 156 GRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGC 215 (520)
Q Consensus 156 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~ 215 (520)
+.+.+.|.+.+++. |++|+.+. |.++..++++ ++++...+| ..+.+|.||.+-..
T Consensus 224 ~al~~aL~~~~~~~-Gg~I~~~~~V~~I~v~~g~--g~~~~~~~g--~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREH-GGEIRTGAEVSQILVEGGK--GVGVRTSDG--ENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHc-CCEEECCCceEEEEEeCCc--ceEEecccc--ceeccceeEecCch
Confidence 35888899999998 79999997 9999998887 566667777 34669998887765
No 219
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.14 E-value=1.3e-05 Score=84.19 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHhhCC--CeEEEEccCC
Q 009994 56 DVIIVGAGVAGAALAHTLGKDG--RRVHVIERDV 87 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G--~~V~v~Er~~ 87 (520)
+|+|||||++|+++|..|++.| .+|+|+|+.+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~ 35 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTD 35 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCC
Confidence 6999999999999999999975 5899999985
No 220
>PRK02106 choline dehydrogenase; Validated
Probab=98.13 E-value=6.8e-05 Score=81.17 Aligned_cols=58 Identities=21% Similarity=0.290 Sum_probs=45.0
Q ss_pred HHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcchh
Q 009994 162 MREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 219 (520)
Q Consensus 162 L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~v 219 (520)
....+.+.++++++.++ |+++..++++++||++...++....+.++-||.|.|+...-
T Consensus 206 ~l~~a~~~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP 264 (560)
T PRK02106 206 YLDPALKRPNLTIVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAINSP 264 (560)
T ss_pred hhccccCCCCcEEEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCH
Confidence 33444456789999887 99999888889999998766655556899999999987543
No 221
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.13 E-value=5e-05 Score=80.11 Aligned_cols=37 Identities=32% Similarity=0.512 Sum_probs=33.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
....+|+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~ 174 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDK 174 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence 4457999999999999999999999999999999864
No 222
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=9.7e-06 Score=81.31 Aligned_cols=151 Identities=23% Similarity=0.372 Sum_probs=89.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCC-Cceeeeeeccch----HHHHHhc-CchhHHhhcccceece
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP-DRIVGELLQPGG----YLKLVEL-GLEDCVEEIDAQQVLG 125 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~-~~~~g~~l~~~~----~~~l~~l-Gl~~~l~~~~~~~~~~ 125 (520)
+..|||+|||||-||+-+|.+.+|.|.+.+|+-.+.+.- ..+|.-.+..-| ++..+.| |+-..+-..
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~------- 98 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQ------- 98 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhh-------
Confidence 668999999999999999999999999999998764321 111111111000 0001111 111100000
Q ss_pred EEEEECCccccccCCCcCCCCCcc----ceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCe-----EEEEEEEe
Q 009994 126 YALFKDGKSTRLSYPLEKFHADVS----GRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGT-----IKGVQYKT 196 (520)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~-----v~gv~v~~ 196 (520)
..+.|..-+...+|. -..++|..+...+.+.+.+.++.+++++.|.++.-.++. +.||. .
T Consensus 99 ---------s~vq~k~LNrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~~V~dliv~~~~~~~~~~~gV~--l 167 (679)
T KOG2311|consen 99 ---------SGVQYKVLNRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREGAVADLIVEDPDDGHCVVSGVV--L 167 (679)
T ss_pred ---------hhhhHHHhhccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhhhhhheeeccCCCCceEEEEEE--E
Confidence 001111111111111 125677778888888888889999999998887643322 44544 4
Q ss_pred CCCcEEEEecCeEEEecCCcchhhhhhc
Q 009994 197 KDGQELRAYAPLTIVCDGCFSNLRRSLC 224 (520)
Q Consensus 197 ~~g~~~~~~ad~vV~AdG~~S~vR~~l~ 224 (520)
.+|+. ++|+-||..+|.+ +|.++.
T Consensus 168 ~dgt~--v~a~~VilTTGTF--L~~~I~ 191 (679)
T KOG2311|consen 168 VDGTV--VYAESVILTTGTF--LRGQIN 191 (679)
T ss_pred ecCcE--eccceEEEeeccc--eeeEEe
Confidence 56774 6699999999976 555543
No 223
>PRK09897 hypothetical protein; Provisional
Probab=98.11 E-value=5.3e-05 Score=80.50 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=29.5
Q ss_pred CcEEEECCCHHHHHHHHHHhhCC--CeEEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDG--RRVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G--~~V~v~Er~~ 87 (520)
.+|+||||||+|+++|..|.+++ ++|+|+|+..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 37999999999999999998865 5899999975
No 224
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.10 E-value=1.1e-05 Score=84.09 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=50.0
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcch
Q 009994 151 RSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 218 (520)
Q Consensus 151 ~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~ 218 (520)
..++...+.+.|...|.+. |+.+.++. |+++....++..+|+ +..|. +++..+|.|+|.+..
T Consensus 182 G~~DP~~lC~ala~~A~~~-GA~viE~cpV~~i~~~~~~~~gVe--T~~G~---iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 182 GVMDPAGLCQALARAASAL-GALVIENCPVTGLHVETDKFGGVE--TPHGS---IETECVVNAAGVWAR 244 (856)
T ss_pred cccCHHHHHHHHHHHHHhc-CcEEEecCCcceEEeecCCcccee--ccCcc---eecceEEechhHHHH
Confidence 4577788999999999998 78888887 999987766655544 66676 568999999999863
No 225
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.09 E-value=2e-05 Score=82.64 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHhhC--CCeEEEEccCCC
Q 009994 56 DVIIVGAGVAGAALAHTLGKD--GRRVHVIERDVT 88 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~--G~~V~v~Er~~~ 88 (520)
+|+|||||++|+.+|..|++. +.+|+|+|+.+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~ 37 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 799999999999999999987 679999999853
No 226
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.09 E-value=2e-05 Score=79.42 Aligned_cols=153 Identities=20% Similarity=0.185 Sum_probs=75.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCC-CeEEEEccCCCCCCceeeeeeccchH--HHHHhcCchhHHhhcccceeceEEEEE
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDG-RRVHVIERDVTEPDRIVGELLQPGGY--LKLVELGLEDCVEEIDAQQVLGYALFK 130 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G-~~V~v~Er~~~~~~~~~g~~l~~~~~--~~l~~lGl~~~l~~~~~~~~~~~~~~~ 130 (520)
.+|+|+||.||++|++|+.|...+ .+++.+||.+...-++ |..+....+ ..|+.|-- -. .+...+++.+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~-gmll~~~~~q~~fl~Dlvt-----~~--~P~s~~sfln 73 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHP-GMLLPGARMQVSFLKDLVT-----LR--DPTSPFSFLN 73 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTG-GG--SS-B-SS-TTSSSST-----TT---TTSTTSHHH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCC-ccCCCCCccccccccccCc-----Cc--CCCCcccHHH
Confidence 479999999999999999999987 8999999987544332 111111110 11111100 00 0000010000
Q ss_pred ----CCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCC---eEEEEEEEeCCCcEE
Q 009994 131 ----DGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENG---TIKGVQYKTKDGQEL 202 (520)
Q Consensus 131 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~---~v~gv~v~~~~g~~~ 202 (520)
.++.. .+- ........|..+.+.|+..+.+.++ .+.+++ |+++...++ ....|+..+.+|+..
T Consensus 74 YL~~~~rl~--~f~------~~~~~~p~R~ef~dYl~Wva~~~~~-~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~ 144 (341)
T PF13434_consen 74 YLHEHGRLY--EFY------NRGYFFPSRREFNDYLRWVAEQLDN-QVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGE 144 (341)
T ss_dssp HHHHTT-HH--HHH------HH--SS-BHHHHHHHHHHHHCCGTT-TEEESEEEEEEEEEEETTEEEEEEEEEETTS-EE
T ss_pred HHHHcCChh--hhh------hcCCCCCCHHHHHHHHHHHHHhCCC-ceEECCEEEEEEEecCCCccEEEEEEeecCCCee
Confidence 01000 000 0001234677889999888888753 356665 888875443 234455555778777
Q ss_pred EEecCeEEEecCCcchhhhhh
Q 009994 203 RAYAPLTIVCDGCFSNLRRSL 223 (520)
Q Consensus 203 ~~~ad~vV~AdG~~S~vR~~l 223 (520)
++.|+-||.|.|..-.+.+.+
T Consensus 145 ~~~ar~vVla~G~~P~iP~~~ 165 (341)
T PF13434_consen 145 TYRARNVVLATGGQPRIPEWF 165 (341)
T ss_dssp EEEESEEEE----EE---GGG
T ss_pred EEEeCeEEECcCCCCCCCcch
Confidence 889999999999655444444
No 227
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.08 E-value=8.1e-05 Score=78.77 Aligned_cols=37 Identities=38% Similarity=0.545 Sum_probs=33.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTE 89 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~ 89 (520)
...+|+||||||+|+++|..|++.|++|+|+|+.+..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~ 178 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI 178 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 3569999999999999999999999999999998643
No 228
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.06 E-value=0.00011 Score=79.05 Aligned_cols=60 Identities=22% Similarity=0.253 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCC-cch
Q 009994 159 IQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGC-FSN 218 (520)
Q Consensus 159 ~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~-~S~ 218 (520)
...+...+.+.+|++++.++ |.++..++++++||++...++......++-||.|.|+ .|+
T Consensus 196 ~~~~l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP 257 (532)
T TIGR01810 196 ARAYLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSP 257 (532)
T ss_pred HHHHhhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCH
Confidence 33444445556799999998 9999888888999998765433334579999999998 443
No 229
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.06 E-value=1.3e-05 Score=90.99 Aligned_cols=35 Identities=29% Similarity=0.313 Sum_probs=32.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
...+|+|||||||||++|..|++.|++|+|+|+..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~ 339 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH 339 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence 35789999999999999999999999999999974
No 230
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.04 E-value=0.00031 Score=69.07 Aligned_cols=69 Identities=16% Similarity=0.180 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCeEEEecCCcchhhhhhcCCC
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNLRRSLCKPK 227 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~-~~g~~~~~~ad~vV~AdG~~S~vR~~l~~~~ 227 (520)
++-....+.+.++ ++.+..++ |+....++++.+.+++.+ .+++..+++||.+..|.|.+ |.-+-|+++.
T Consensus 253 Eisk~~qr~L~kQ-gikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRr-P~t~GLgle~ 323 (506)
T KOG1335|consen 253 EISKAFQRVLQKQ-GIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRR-PFTEGLGLEK 323 (506)
T ss_pred HHHHHHHHHHHhc-CceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCc-ccccCCChhh
Confidence 3444455555555 89999998 999988776434466665 56777889999999999965 5666666544
No 231
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.02 E-value=4.2e-05 Score=73.04 Aligned_cols=54 Identities=26% Similarity=0.435 Sum_probs=41.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHhhC--CCeEEEEccCCCCCC----c-----eeeeeeccchHH
Q 009994 51 NGSPTDVIIVGAGVAGAALAHTLGKD--GRRVHVIERDVTEPD----R-----IVGELLQPGGYL 104 (520)
Q Consensus 51 ~~~~~dV~IVGaG~aGl~~A~~La~~--G~~V~v~Er~~~~~~----~-----~~g~~l~~~~~~ 104 (520)
...++|.+|||||++|++.|..|.-+ +.+|.|+|+..+... + ..|....|++++
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLK 109 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLK 109 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccc
Confidence 46789999999999999999998876 899999999865321 1 234556666654
No 232
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.98 E-value=5.6e-05 Score=78.91 Aligned_cols=111 Identities=19% Similarity=0.193 Sum_probs=70.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEEC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKD 131 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 131 (520)
.++.+|+|||||.+|+.+|..|.+.+++|+|||+++... +.+. +-....
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~-------~~~~----l~~~~~-------------------- 56 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML-------FTPL----LPQTTT-------------------- 56 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc-------hhhh----HHHhcc--------------------
Confidence 445689999999999999999988889999999875211 1110 100000
Q ss_pred CccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEe--------CCCcEEE
Q 009994 132 GKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKT--------KDGQELR 203 (520)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~gv~v~~--------~~g~~~~ 203 (520)
|. .....+..-+++.+... ++++..++|+++..++..+ .+.. .+|. +
T Consensus 57 g~-------------------~~~~~~~~~~~~~~~~~-~~~~i~~~V~~Id~~~~~v---~~~~~~~~~~~~~~g~--~ 111 (424)
T PTZ00318 57 GT-------------------LEFRSICEPVRPALAKL-PNRYLRAVVYDVDFEEKRV---KCGVVSKSNNANVNTF--S 111 (424)
T ss_pred cC-------------------CChHHhHHHHHHHhccC-CeEEEEEEEEEEEcCCCEE---EEecccccccccCCce--E
Confidence 00 00011222244445444 6889999999998776643 3311 2333 4
Q ss_pred EecCeEEEecCCcch
Q 009994 204 AYAPLTIVCDGCFSN 218 (520)
Q Consensus 204 ~~ad~vV~AdG~~S~ 218 (520)
+.+|++|.|+|....
T Consensus 112 i~yD~LViAtGs~~~ 126 (424)
T PTZ00318 112 VPYDKLVVAHGARPN 126 (424)
T ss_pred ecCCEEEECCCcccC
Confidence 679999999998753
No 233
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=8e-06 Score=78.79 Aligned_cols=115 Identities=23% Similarity=0.276 Sum_probs=76.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEE-ccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEE
Q 009994 51 NGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVI-ERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALF 129 (520)
Q Consensus 51 ~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~-Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~ 129 (520)
....|||+||||||||.++|.+.+|.|++.-|+ ||-- | ..|+.++++..+
T Consensus 208 ~k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfG-------G--------QvldT~~IENfI-------------- 258 (520)
T COG3634 208 AKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFG-------G--------QVLDTMGIENFI-------------- 258 (520)
T ss_pred ccCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhC-------C--------eeccccchhhee--------------
Confidence 456799999999999999999999999987655 4431 1 133444443211
Q ss_pred ECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCe
Q 009994 130 KDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPL 208 (520)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~ 208 (520)
..|. ..-.+|...|.+++++. .+++.... .++++.....-.-.+++..+|-. .+++-
T Consensus 259 --------sv~~-----------teGpkl~~ale~Hv~~Y-~vDimn~qra~~l~~a~~~~~l~ev~l~nGav--Lkakt 316 (520)
T COG3634 259 --------SVPE-----------TEGPKLAAALEAHVKQY-DVDVMNLQRASKLEPAAVEGGLIEVELANGAV--LKART 316 (520)
T ss_pred --------cccc-----------ccchHHHHHHHHHHhhc-CchhhhhhhhhcceecCCCCccEEEEecCCce--eccce
Confidence 1110 11235788888888887 68887765 67776532111135566788875 44999
Q ss_pred EEEecCCc
Q 009994 209 TIVCDGCF 216 (520)
Q Consensus 209 vV~AdG~~ 216 (520)
+|.++|++
T Consensus 317 vIlstGAr 324 (520)
T COG3634 317 VILATGAR 324 (520)
T ss_pred EEEecCcc
Confidence 99999975
No 234
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.95 E-value=2.5e-05 Score=80.47 Aligned_cols=61 Identities=31% Similarity=0.375 Sum_probs=46.5
Q ss_pred cEEEECCCHHHHHHHHHHhhCC--CeEEEEccCCCCCCcee-----e-------ee--ec-cchHHHHHhcCchhHHh
Q 009994 56 DVIIVGAGVAGAALAHTLGKDG--RRVHVIERDVTEPDRIV-----G-------EL--LQ-PGGYLKLVELGLEDCVE 116 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G--~~V~v~Er~~~~~~~~~-----g-------~~--l~-~~~~~~l~~lGl~~~l~ 116 (520)
.|+|||||++||++|+.|+++| ++|+|+|+++......+ | .. .. +..++.++++|+.+.+.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~ 79 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLL 79 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHhhc
Confidence 5999999999999999999999 99999999865432111 1 11 11 44557788999998876
No 235
>PRK07846 mycothione reductase; Reviewed
Probab=97.93 E-value=5.7e-05 Score=79.44 Aligned_cols=43 Identities=26% Similarity=0.472 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchH
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGY 103 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~ 103 (520)
+|||+||||||+|.++|.. +.|.+|+|+|+.. ..|..++.+.+
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~-----~GGtC~n~GCi 43 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT-----FGGTCLNVGCI 43 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC-----CCCcccCcCcc
Confidence 4899999999999988866 4699999999863 33445555443
No 236
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.93 E-value=0.00014 Score=78.76 Aligned_cols=36 Identities=28% Similarity=0.426 Sum_probs=32.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
...+|+||||||+||++|..|++.|++|+|+|+.+.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~ 171 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPK 171 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 345899999999999999999999999999999764
No 237
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.93 E-value=0.00029 Score=74.59 Aligned_cols=103 Identities=23% Similarity=0.342 Sum_probs=72.8
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.. + +. .
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~--------l-~~---------~----------------------- 211 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRA--------L-PN---------E----------------------- 211 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc--------C-Cc---------c-----------------------
Confidence 47999999999999999999999999999986410 0 00 0
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEec
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 213 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~Ad 213 (520)
..++.+.+.+.+++. +++++.++ |+++..+++.+. +.+...+|+..++.+|.||.|.
T Consensus 212 --------------------d~~~~~~l~~~l~~~-gV~i~~~~~v~~i~~~~~~~~-v~~~~~~g~~~~i~~D~vi~a~ 269 (466)
T PRK07818 212 --------------------DAEVSKEIAKQYKKL-GVKILTGTKVESIDDNGSKVT-VTVSKKDGKAQELEADKVLQAI 269 (466)
T ss_pred --------------------CHHHHHHHHHHHHHC-CCEEEECCEEEEEEEeCCeEE-EEEEecCCCeEEEEeCEEEECc
Confidence 012334455555665 89999887 888876555432 4443346655567899999999
Q ss_pred CCcchhh
Q 009994 214 GCFSNLR 220 (520)
Q Consensus 214 G~~S~vR 220 (520)
|...+..
T Consensus 270 G~~pn~~ 276 (466)
T PRK07818 270 GFAPRVE 276 (466)
T ss_pred CcccCCC
Confidence 9876653
No 238
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.92 E-value=1.2e-05 Score=84.47 Aligned_cols=41 Identities=37% Similarity=0.481 Sum_probs=36.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDR 92 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~ 92 (520)
.+..+|+|||||+|||+||..|.+.|++|+|+|.+.....|
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR 53 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR 53 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence 56789999999999999999999999999999998765443
No 239
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.92 E-value=0.00012 Score=77.25 Aligned_cols=101 Identities=25% Similarity=0.350 Sum_probs=73.3
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
.+|+|||||++|+-+|..|++.|.+|+|+|+.+.. + + .+
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~--------l-~---------~~----------------------- 209 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI--------L-P---------GE----------------------- 209 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC--------C-C---------CC-----------------------
Confidence 57999999999999999999999999999997421 0 0 00
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEec
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 213 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~Ad 213 (520)
...+.+.+.+.+++. +++++.++ |.++..+++. +.+...+|+..++.+|.||.|.
T Consensus 210 --------------------~~~~~~~~~~~l~~~-gi~i~~~~~v~~i~~~~~~---v~v~~~~g~~~~i~~D~vi~a~ 265 (461)
T TIGR01350 210 --------------------DAEVSKVVAKALKKK-GVKILTNTKVTAVEKNDDQ---VVYENKGGETETLTGEKVLVAV 265 (461)
T ss_pred --------------------CHHHHHHHHHHHHHc-CCEEEeCCEEEEEEEeCCE---EEEEEeCCcEEEEEeCEEEEec
Confidence 012334455566665 79999886 8888776664 3344555644457899999999
Q ss_pred CCcchhh
Q 009994 214 GCFSNLR 220 (520)
Q Consensus 214 G~~S~vR 220 (520)
|..+...
T Consensus 266 G~~p~~~ 272 (461)
T TIGR01350 266 GRKPNTE 272 (461)
T ss_pred CCcccCC
Confidence 9887654
No 240
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.88 E-value=5.9e-05 Score=77.09 Aligned_cols=105 Identities=14% Similarity=0.135 Sum_probs=65.1
Q ss_pred cEEEECCCHHHHHHHHHHhhC---CCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECC
Q 009994 56 DVIIVGAGVAGAALAHTLGKD---GRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDG 132 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~---G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 132 (520)
+|+|||||++|+.+|..|+++ +.+|+|+|++.... +.+.....+. |.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~-------~~~~~~~~~~--g~--------------------- 50 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP-------YSGMLPGMIA--GH--------------------- 50 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc-------ccchhhHHHh--ee---------------------
Confidence 489999999999999999744 68999999875311 1110000000 00
Q ss_pred ccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEe
Q 009994 133 KSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVC 212 (520)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~A 212 (520)
....++...+.+.+++. ++++..++|+++..+... +...+|++ +.+|++|.|
T Consensus 51 --------------------~~~~~~~~~~~~~~~~~-gv~~~~~~v~~id~~~~~-----V~~~~g~~--~~yD~LviA 102 (364)
T TIGR03169 51 --------------------YSLDEIRIDLRRLARQA-GARFVIAEATGIDPDRRK-----VLLANRPP--LSYDVLSLD 102 (364)
T ss_pred --------------------CCHHHhcccHHHHHHhc-CCEEEEEEEEEEecccCE-----EEECCCCc--ccccEEEEc
Confidence 00001111222334444 799998889998776653 23456654 569999999
Q ss_pred cCCcch
Q 009994 213 DGCFSN 218 (520)
Q Consensus 213 dG~~S~ 218 (520)
+|+...
T Consensus 103 tG~~~~ 108 (364)
T TIGR03169 103 VGSTTP 108 (364)
T ss_pred cCCCCC
Confidence 997654
No 241
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.88 E-value=0.00015 Score=74.39 Aligned_cols=105 Identities=20% Similarity=0.331 Sum_probs=72.9
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||||+.|+-+|..|++.|.+|+++|+.+... ++ .
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l---------~~---------~----------------------- 180 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLL---------AS---------L----------------------- 180 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCccc---------ch---------h-----------------------
Confidence 479999999999999999999999999999874210 00 0
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEec
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 213 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~Ad 213 (520)
. ...+...+.+.+++. ++++..++ ++++..+++. +.+...+|++ +.+|+||.|+
T Consensus 181 ----~---------------~~~~~~~l~~~l~~~-gV~i~~~~~v~~i~~~~~~---~~v~~~~g~~--i~~D~vI~a~ 235 (377)
T PRK04965 181 ----M---------------PPEVSSRLQHRLTEM-GVHLLLKSQLQGLEKTDSG---IRATLDSGRS--IEVDAVIAAA 235 (377)
T ss_pred ----C---------------CHHHHHHHHHHHHhC-CCEEEECCeEEEEEccCCE---EEEEEcCCcE--EECCEEEECc
Confidence 0 011334455555555 79998876 8888766553 3445567764 6699999999
Q ss_pred CCcch--hhhhhcC
Q 009994 214 GCFSN--LRRSLCK 225 (520)
Q Consensus 214 G~~S~--vR~~l~~ 225 (520)
|..++ +.+..++
T Consensus 236 G~~p~~~l~~~~gl 249 (377)
T PRK04965 236 GLRPNTALARRAGL 249 (377)
T ss_pred CCCcchHHHHHCCC
Confidence 98664 4444443
No 242
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.85 E-value=1.7e-05 Score=84.58 Aligned_cols=64 Identities=20% Similarity=0.324 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcchhhhhhc
Q 009994 156 GRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLRRSLC 224 (520)
Q Consensus 156 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~vR~~l~ 224 (520)
..+.+.|.+.+++. |++++.++ |+++..+++++.+|+ ..+|++ +.||.||.|.|.+..+++.+.
T Consensus 229 ~~l~~~L~~~~~~~-G~~i~~~~~V~~I~~~~~~~~gv~--~~~g~~--~~ad~vV~a~~~~~~~~~Ll~ 293 (493)
T TIGR02730 229 GQIAESLVKGLEKH-GGQIRYRARVTKIILENGKAVGVK--LADGEK--IYAKRIVSNATRWDTFGKLLK 293 (493)
T ss_pred HHHHHHHHHHHHHC-CCEEEeCCeeeEEEecCCcEEEEE--eCCCCE--EEcCEEEECCChHHHHHHhCC
Confidence 35778888888888 78888887 999987777766665 456664 559999999999888877664
No 243
>PLN02576 protoporphyrinogen oxidase
Probab=97.85 E-value=2.1e-05 Score=83.98 Aligned_cols=40 Identities=40% Similarity=0.459 Sum_probs=35.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhC-CCeEEEEccCCCCCC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKD-GRRVHVIERDVTEPD 91 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~-G~~V~v~Er~~~~~~ 91 (520)
.+++||+|||||++||++|+.|+++ |++|+|+|++.....
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG 50 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG 50 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 5567999999999999999999999 999999999875443
No 244
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.83 E-value=1.9e-05 Score=84.15 Aligned_cols=59 Identities=17% Similarity=0.071 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeC-CCcEEEEecCeEEEecCCc
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTK-DGQELRAYAPLTIVCDGCF 216 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~-~g~~~~~~ad~vV~AdG~~ 216 (520)
.+.+.|.+.+++. |++++.++ |+++..+++++.+|.+.+. +|+..++.||.||.+.-..
T Consensus 233 ~l~~aL~~~~~~~-G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 233 TLSDRLVEALKRD-GGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHhc-CCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 4677788888776 67888887 9999988887667766432 2222356799999887764
No 245
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.83 E-value=0.00032 Score=74.14 Aligned_cols=99 Identities=21% Similarity=0.256 Sum_probs=71.8
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.. + + .+
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~--------l-~---------~~----------------------- 214 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL--------L-S---------FL----------------------- 214 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc--------C-C---------cC-----------------------
Confidence 57999999999999999999999999999987411 0 0 00
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEec
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 213 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~Ad 213 (520)
...+.+.|.+.+++. +++++.++ ++++..+++. +.+...+|++ +.+|.||.|+
T Consensus 215 --------------------d~~~~~~l~~~l~~~-gI~v~~~~~v~~i~~~~~~---~~v~~~~g~~--i~~D~vi~a~ 268 (461)
T PRK05249 215 --------------------DDEISDALSYHLRDS-GVTIRHNEEVEKVEGGDDG---VIVHLKSGKK--IKADCLLYAN 268 (461)
T ss_pred --------------------CHHHHHHHHHHHHHc-CCEEEECCEEEEEEEeCCe---EEEEECCCCE--EEeCEEEEee
Confidence 012344455555555 89999886 8888766553 3444556653 6699999999
Q ss_pred CCcchhh
Q 009994 214 GCFSNLR 220 (520)
Q Consensus 214 G~~S~vR 220 (520)
|......
T Consensus 269 G~~p~~~ 275 (461)
T PRK05249 269 GRTGNTD 275 (461)
T ss_pred cCCcccc
Confidence 9887654
No 246
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.82 E-value=0.00011 Score=76.00 Aligned_cols=34 Identities=32% Similarity=0.524 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCC--eEEEEccCCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGR--RVHVIERDVT 88 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~--~V~v~Er~~~ 88 (520)
.+|+|||||+||+++|..|++.|. +|+|+++...
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~ 39 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERH 39 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 479999999999999999999986 7999998753
No 247
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.81 E-value=0.0006 Score=72.07 Aligned_cols=101 Identities=19% Similarity=0.314 Sum_probs=71.6
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||||++|+-+|..|++.|.+|+++|+.+.. + +. +.
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~--------l-~~---------~~---------------------- 212 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI--------L-PG---------ED---------------------- 212 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCc--------C-Cc---------CC----------------------
Confidence 47999999999999999999999999999997421 0 00 00
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCC-CcEEEEecCeEEEe
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKD-GQELRAYAPLTIVC 212 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~-g~~~~~~ad~vV~A 212 (520)
..+.+.+.+.+++. +++++.++ |+++..+++. +.+...+ |+..++.+|.||.|
T Consensus 213 ---------------------~~~~~~l~~~l~~~-gV~i~~~~~V~~i~~~~~~---v~v~~~~gg~~~~i~~D~vi~a 267 (462)
T PRK06416 213 ---------------------KEISKLAERALKKR-GIKIKTGAKAKKVEQTDDG---VTVTLEDGGKEETLEADYVLVA 267 (462)
T ss_pred ---------------------HHHHHHHHHHHHHc-CCEEEeCCEEEEEEEeCCE---EEEEEEeCCeeEEEEeCEEEEe
Confidence 11334445555555 79999986 8888876664 3343333 44456789999999
Q ss_pred cCCcchhh
Q 009994 213 DGCFSNLR 220 (520)
Q Consensus 213 dG~~S~vR 220 (520)
.|......
T Consensus 268 ~G~~p~~~ 275 (462)
T PRK06416 268 VGRRPNTE 275 (462)
T ss_pred eCCccCCC
Confidence 99876543
No 248
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.80 E-value=0.0003 Score=73.21 Aligned_cols=110 Identities=25% Similarity=0.339 Sum_probs=77.0
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCc
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGK 133 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 133 (520)
.-.++|||||+.|+=.|..+++.|.+|+|+|+.+.. | | +.
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i--------L-p---------~~---------------------- 212 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI--------L-P---------GE---------------------- 212 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC--------C-C---------cC----------------------
Confidence 346999999999999999999999999999998521 0 0 00
Q ss_pred cccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEe
Q 009994 134 STRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVC 212 (520)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~A 212 (520)
-.++.+.+.+.+++ .++.++.++ ++..+..++. +.+..++|+..++++|.++.|
T Consensus 213 ---------------------D~ei~~~~~~~l~~-~gv~i~~~~~v~~~~~~~~~---v~v~~~~g~~~~~~ad~vLvA 267 (454)
T COG1249 213 ---------------------DPEISKELTKQLEK-GGVKILLNTKVTAVEKKDDG---VLVTLEDGEGGTIEADAVLVA 267 (454)
T ss_pred ---------------------CHHHHHHHHHHHHh-CCeEEEccceEEEEEecCCe---EEEEEecCCCCEEEeeEEEEc
Confidence 02355566666666 589999998 7777666664 444455554335679999999
Q ss_pred cCCcchhhhhhcCCCCC
Q 009994 213 DGCFSNLRRSLCKPKVD 229 (520)
Q Consensus 213 dG~~S~vR~~l~~~~~~ 229 (520)
.|...++ +.|+.+..+
T Consensus 268 iGR~Pn~-~~LgLe~~G 283 (454)
T COG1249 268 IGRKPNT-DGLGLENAG 283 (454)
T ss_pred cCCccCC-CCCChhhcC
Confidence 9976544 334444333
No 249
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.80 E-value=2.6e-05 Score=82.03 Aligned_cols=59 Identities=31% Similarity=0.432 Sum_probs=43.2
Q ss_pred cEEEECCCHHHHHHHHHHhhCC--CeEEEEccCCCCCCceee-----eee----------ccchHHHHHhcCchhH
Q 009994 56 DVIIVGAGVAGAALAHTLGKDG--RRVHVIERDVTEPDRIVG-----ELL----------QPGGYLKLVELGLEDC 114 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G--~~V~v~Er~~~~~~~~~g-----~~l----------~~~~~~~l~~lGl~~~ 114 (520)
+|+|||||++||++|+.|+++| ++|+|+|++.....+... ..+ .+...+.++++|+.+.
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~ 77 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKELGLEDE 77 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHcCCccc
Confidence 6999999999999999999988 899999998754433221 111 1234467788887643
No 250
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=2.6e-05 Score=80.12 Aligned_cols=36 Identities=36% Similarity=0.380 Sum_probs=33.0
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP 90 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~ 90 (520)
.+|+|+|||+|||++|+.|+.+|++|+|+|+++...
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~G 36 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLG 36 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccC
Confidence 369999999999999999999999999999997643
No 251
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.77 E-value=0.00037 Score=73.88 Aligned_cols=102 Identities=18% Similarity=0.262 Sum_probs=72.9
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-.|+|||+|..|+-+|..|++.|.+|+|+|+.+.. .+. ..
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~---------l~~---------~d---------------------- 223 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAF---------LAA---------AD---------------------- 223 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCcc---------CCc---------CC----------------------
Confidence 48999999999999999999999999999987421 000 00
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEec
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 213 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~Ad 213 (520)
..+.+.+.+.+++. ++.++.++ |+++..+++.+. +.+.+.+|++.++.+|.||.|.
T Consensus 224 ---------------------~~~~~~~~~~l~~~-gi~i~~~~~v~~i~~~~~~v~-v~~~~~~g~~~~i~~D~vl~a~ 280 (475)
T PRK06327 224 ---------------------EQVAKEAAKAFTKQ-GLDIHLGVKIGEIKTGGKGVS-VAYTDADGEAQTLEVDKLIVSI 280 (475)
T ss_pred ---------------------HHHHHHHHHHHHHc-CcEEEeCcEEEEEEEcCCEEE-EEEEeCCCceeEEEcCEEEEcc
Confidence 12334444555555 89999886 889887665432 4444444655568899999999
Q ss_pred CCcchh
Q 009994 214 GCFSNL 219 (520)
Q Consensus 214 G~~S~v 219 (520)
|.....
T Consensus 281 G~~p~~ 286 (475)
T PRK06327 281 GRVPNT 286 (475)
T ss_pred CCccCC
Confidence 987664
No 252
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.77 E-value=0.00028 Score=72.98 Aligned_cols=98 Identities=22% Similarity=0.265 Sum_probs=69.5
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||+|..|+-+|..|++.|.+|+|+|+.+.. +.+. .
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~----------------l~~~-~----------------------- 184 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATV----------------MGRN-A----------------------- 184 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc----------------hhhh-c-----------------------
Confidence 46999999999999999999999999999987411 0000 0
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEec
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 213 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~Ad 213 (520)
...+...+.+.+++. +++++.++ ++++.. ++. +.+...+|++ +.+|+||.|.
T Consensus 185 --------------------~~~~~~~l~~~l~~~-GV~i~~~~~V~~i~~-~~~---~~v~l~~g~~--i~aD~Vv~a~ 237 (396)
T PRK09754 185 --------------------PPPVQRYLLQRHQQA-GVRILLNNAIEHVVD-GEK---VELTLQSGET--LQADVVIYGI 237 (396)
T ss_pred --------------------CHHHHHHHHHHHHHC-CCEEEeCCeeEEEEc-CCE---EEEEECCCCE--EECCEEEECC
Confidence 012334455555555 89999886 888765 332 3455667764 5699999999
Q ss_pred CCcchh
Q 009994 214 GCFSNL 219 (520)
Q Consensus 214 G~~S~v 219 (520)
|...+.
T Consensus 238 G~~pn~ 243 (396)
T PRK09754 238 GISAND 243 (396)
T ss_pred CCChhh
Confidence 987653
No 253
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.76 E-value=0.00027 Score=74.43 Aligned_cols=43 Identities=23% Similarity=0.412 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchH
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGY 103 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~ 103 (520)
+|||+|||+||+|..+|.. +.|.+|+|+||+. ..|..++.+.+
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~-----~GGtC~n~GCi 44 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGT-----FGGTCLNVGCI 44 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC-----CCCeeeccCcc
Confidence 5899999999999988654 4799999999863 33555555444
No 254
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.75 E-value=0.00036 Score=73.63 Aligned_cols=100 Identities=23% Similarity=0.380 Sum_probs=71.1
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.. + + +.
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l--------l-~---------~~----------------------- 209 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL--------L-P---------GE----------------------- 209 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc--------C-c---------cc-----------------------
Confidence 47999999999999999999999999999987421 0 0 00
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEec
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 213 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~Ad 213 (520)
...+.+.+.+.+++. +++++.++ ++++..+++. +.+.. +|+..++.+|+||.|+
T Consensus 210 --------------------d~e~~~~l~~~L~~~-GI~i~~~~~V~~i~~~~~~---v~~~~-~g~~~~i~~D~vivA~ 264 (458)
T PRK06912 210 --------------------DEDIAHILREKLEND-GVKIFTGAALKGLNSYKKQ---ALFEY-EGSIQEVNAEFVLVSV 264 (458)
T ss_pred --------------------cHHHHHHHHHHHHHC-CCEEEECCEEEEEEEcCCE---EEEEE-CCceEEEEeCEEEEec
Confidence 012344455556665 89999987 8888765543 33433 3444467899999999
Q ss_pred CCcchhh
Q 009994 214 GCFSNLR 220 (520)
Q Consensus 214 G~~S~vR 220 (520)
|...++.
T Consensus 265 G~~p~~~ 271 (458)
T PRK06912 265 GRKPRVQ 271 (458)
T ss_pred CCccCCC
Confidence 9877653
No 255
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.74 E-value=3.8e-05 Score=73.85 Aligned_cols=51 Identities=27% Similarity=0.427 Sum_probs=41.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhc
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVEL 109 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~l 109 (520)
+++||+|||||.||+++|+.|+++|.++.|+-+..+ ...+..+.+..|.++
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs------ALhfsSGslDlL~~l 51 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS------ALHFSSGSLDLLGRL 51 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh------hhhcccccHHHhhcC
Confidence 468999999999999999999999999999998754 333455566666554
No 256
>PLN02268 probable polyamine oxidase
Probab=97.74 E-value=3.6e-05 Score=80.66 Aligned_cols=36 Identities=31% Similarity=0.465 Sum_probs=32.7
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP 90 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~ 90 (520)
.+|+|||||++||++|+.|.+.|++|+|+|+++...
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~G 36 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIG 36 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 379999999999999999999999999999986543
No 257
>PRK06370 mercuric reductase; Validated
Probab=97.72 E-value=0.00084 Score=70.97 Aligned_cols=101 Identities=21% Similarity=0.300 Sum_probs=70.5
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.. + +. .
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~--------l-~~---------~----------------------- 210 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRL--------L-PR---------E----------------------- 210 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCC--------C-cc---------c-----------------------
Confidence 57999999999999999999999999999987421 0 00 0
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEec
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 213 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~Ad 213 (520)
...+.+.+.+.+++. |++++.++ |.++..+++.+ .+.+...+++ .++.+|.||.|.
T Consensus 211 --------------------~~~~~~~l~~~l~~~-GV~i~~~~~V~~i~~~~~~~-~v~~~~~~~~-~~i~~D~Vi~A~ 267 (463)
T PRK06370 211 --------------------DEDVAAAVREILERE-GIDVRLNAECIRVERDGDGI-AVGLDCNGGA-PEITGSHILVAV 267 (463)
T ss_pred --------------------CHHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCEE-EEEEEeCCCc-eEEEeCEEEECc
Confidence 011333445555555 89999886 88887765543 2444433332 357799999999
Q ss_pred CCcchh
Q 009994 214 GCFSNL 219 (520)
Q Consensus 214 G~~S~v 219 (520)
|...+.
T Consensus 268 G~~pn~ 273 (463)
T PRK06370 268 GRVPNT 273 (463)
T ss_pred CCCcCC
Confidence 977654
No 258
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.72 E-value=0.00037 Score=73.85 Aligned_cols=101 Identities=26% Similarity=0.320 Sum_probs=71.0
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.. .+. .
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~i---------l~~---------~----------------------- 219 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRI---------LPT---------E----------------------- 219 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc---------CCc---------C-----------------------
Confidence 57999999999999999999999999999987521 000 0
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEe-eCCeEEEEEEEeCCCcEEEEecCeEEEe
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLE-ENGTIKGVQYKTKDGQELRAYAPLTIVC 212 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~-~~~~v~gv~v~~~~g~~~~~~ad~vV~A 212 (520)
...+.+.+.+.+++. |++++.++ ++++.. .++++. .+...+|+..++.+|.||.|
T Consensus 220 --------------------~~~~~~~l~~~l~~~-gI~i~~~~~v~~i~~~~~~~~~--~~~~~~g~~~~i~~D~vi~a 276 (472)
T PRK05976 220 --------------------DAELSKEVARLLKKL-GVRVVTGAKVLGLTLKKDGGVL--IVAEHNGEEKTLEADKVLVS 276 (472)
T ss_pred --------------------CHHHHHHHHHHHHhc-CCEEEeCcEEEEEEEecCCCEE--EEEEeCCceEEEEeCEEEEe
Confidence 012334445555555 89999887 888864 234332 22334566556889999999
Q ss_pred cCCcchh
Q 009994 213 DGCFSNL 219 (520)
Q Consensus 213 dG~~S~v 219 (520)
.|...+.
T Consensus 277 ~G~~p~~ 283 (472)
T PRK05976 277 VGRRPNT 283 (472)
T ss_pred eCCccCC
Confidence 9987654
No 259
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.72 E-value=0.00034 Score=74.00 Aligned_cols=103 Identities=19% Similarity=0.307 Sum_probs=72.0
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCc
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGK 133 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 133 (520)
.-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.. + + ++.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~i--------l-~---------~~d--------------------- 214 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI--------C-P---------GTD--------------------- 214 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCC--------C-C---------CCC---------------------
Confidence 357999999999999999999999999999986421 0 0 000
Q ss_pred cccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCeEEE
Q 009994 134 STRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIV 211 (520)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~-~~g~~~~~~ad~vV~ 211 (520)
..+...+.+.+++. +++++.++ ++++..+++.+ .+.+.. .+|+..++.+|.||.
T Consensus 215 ----------------------~~~~~~l~~~l~~~-gV~i~~~~~V~~i~~~~~~v-~v~~~~~~~g~~~~i~~D~vi~ 270 (466)
T PRK06115 215 ----------------------TETAKTLQKALTKQ-GMKFKLGSKVTGATAGADGV-SLTLEPAAGGAAETLQADYVLV 270 (466)
T ss_pred ----------------------HHHHHHHHHHHHhc-CCEEEECcEEEEEEEcCCeE-EEEEEEcCCCceeEEEeCEEEE
Confidence 11334455555555 89999886 88887655543 244443 234445678999999
Q ss_pred ecCCcchh
Q 009994 212 CDGCFSNL 219 (520)
Q Consensus 212 AdG~~S~v 219 (520)
|.|.....
T Consensus 271 a~G~~pn~ 278 (466)
T PRK06115 271 AIGRRPYT 278 (466)
T ss_pred ccCCcccc
Confidence 99987654
No 260
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.00011 Score=70.68 Aligned_cols=117 Identities=19% Similarity=0.242 Sum_probs=72.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCC-----CceeeeeeccchHH---HHHhcCch-hHHhhcccceec
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP-----DRIVGELLQPGGYL---KLVELGLE-DCVEEIDAQQVL 124 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~-----~~~~g~~l~~~~~~---~l~~lGl~-~~l~~~~~~~~~ 124 (520)
...|-|||||.||.-+|+.++++|++|.|+|-++... ....++++..++++ .-...|+. ++++..+..
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlLk~EMR~lgSl--- 79 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLLKAEMRLLGSL--- 79 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCcccccchhhheeccccccchhhhhhHHHHHHHHHhhhH---
Confidence 4579999999999999999999999999999775321 11223333333221 11223433 233222111
Q ss_pred eEEEEECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEe
Q 009994 125 GYALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLE 184 (520)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~ 184 (520)
+....+. ...| .-....++|..|-+.+.+.++++|.|+++.+.|+++-.
T Consensus 80 ---ii~~Ad~--~~VP------AGgALAVDR~~Fs~~vT~~l~~hpli~vireEvt~iP~ 128 (439)
T COG1206 80 ---IIEAADK--HRVP------AGGALAVDRDGFSQAVTEKLENHPLIEVIREEVTEIPP 128 (439)
T ss_pred ---Hhhhhhh--ccCC------CCceeeecHhHHHHHHHHHHhcCCCEEEEccccccCCC
Confidence 0000000 0111 11235789999999999999999999999988887754
No 261
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.71 E-value=3.8e-05 Score=78.01 Aligned_cols=34 Identities=44% Similarity=0.642 Sum_probs=31.9
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
+||+|||||++|+++|..|++.|.+|+|+|++..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~ 35 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNH 35 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 6999999999999999999999999999999753
No 262
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.69 E-value=0.00037 Score=74.69 Aligned_cols=96 Identities=25% Similarity=0.317 Sum_probs=72.1
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||||..|+-+|..|+..|.+|+|+++.+... .
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~---------~---------------------------------- 388 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK---------A---------------------------------- 388 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc---------c----------------------------------
Confidence 489999999999999999999999999999874210 0
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCeEEEe
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVC 212 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~-~~g~~~~~~ad~vV~A 212 (520)
.+.|.+.+.+.+|++++.++ ++++..+++++.++++++ .+|++.++.+|.++.|
T Consensus 389 ------------------------~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~ 444 (517)
T PRK15317 389 ------------------------DQVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQ 444 (517)
T ss_pred ------------------------cHHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEe
Confidence 00122233333589999987 888887767777777765 3566667889999999
Q ss_pred cCCcc
Q 009994 213 DGCFS 217 (520)
Q Consensus 213 dG~~S 217 (520)
.|...
T Consensus 445 ~G~~p 449 (517)
T PRK15317 445 IGLVP 449 (517)
T ss_pred ECCcc
Confidence 99754
No 263
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.69 E-value=0.0011 Score=69.98 Aligned_cols=101 Identities=20% Similarity=0.284 Sum_probs=69.8
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||+|++|+-+|..|++.|.+|+|+|+.+.. + +. ..
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~--------l-~~---------~d---------------------- 206 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL--------L-PR---------EE---------------------- 206 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC--------C-Cc---------cC----------------------
Confidence 57999999999999999999999999999987421 0 00 00
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEec
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 213 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~Ad 213 (520)
..+...+.+.+++. +++++.++ |+++..+++.. .+++...++ ..++.+|.||.|.
T Consensus 207 ---------------------~~~~~~l~~~l~~~-gV~i~~~~~V~~i~~~~~~~-~v~~~~~~~-~~~i~~D~ViiA~ 262 (463)
T TIGR02053 207 ---------------------PEISAAVEEALAEE-GIEVVTSAQVKAVSVRGGGK-IITVEKPGG-QGEVEADELLVAT 262 (463)
T ss_pred ---------------------HHHHHHHHHHHHHc-CCEEEcCcEEEEEEEcCCEE-EEEEEeCCC-ceEEEeCEEEEeE
Confidence 01233344455554 89999987 88887665432 244433223 2457799999999
Q ss_pred CCcchh
Q 009994 214 GCFSNL 219 (520)
Q Consensus 214 G~~S~v 219 (520)
|.....
T Consensus 263 G~~p~~ 268 (463)
T TIGR02053 263 GRRPNT 268 (463)
T ss_pred CCCcCC
Confidence 977654
No 264
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00022 Score=64.94 Aligned_cols=118 Identities=19% Similarity=0.287 Sum_probs=77.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEEC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKD 131 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 131 (520)
.+...|+|||.|||+-.+|+++++.-++.+|+|-.. ...+.|+++- .
T Consensus 6 ~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~-------~~~i~pGGQL----------------------t---- 52 (322)
T KOG0404|consen 6 THNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMM-------ANGIAPGGQL----------------------T---- 52 (322)
T ss_pred eeeeeEEEEccCchHHHHHHHHhhcccCceEEeeee-------ccCcCCCcee----------------------e----
Confidence 455689999999999999999999999999999653 1122222210 0
Q ss_pred CccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEE
Q 009994 132 GKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIV 211 (520)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~ 211 (520)
.....++++.-|.| +.-.+|.+.+++...+. |.++...+|.++..+..... +-++ .+ .+.||.||.
T Consensus 53 -----TTT~veNfPGFPdg--i~G~~l~d~mrkqs~r~-Gt~i~tEtVskv~~sskpF~---l~td-~~--~v~~~avI~ 118 (322)
T KOG0404|consen 53 -----TTTDVENFPGFPDG--ITGPELMDKMRKQSERF-GTEIITETVSKVDLSSKPFK---LWTD-AR--PVTADAVIL 118 (322)
T ss_pred -----eeeccccCCCCCcc--cccHHHHHHHHHHHHhh-cceeeeeehhhccccCCCeE---EEec-CC--ceeeeeEEE
Confidence 00000111111111 33457899999999988 78888888888876655322 2222 22 356999999
Q ss_pred ecCCc
Q 009994 212 CDGCF 216 (520)
Q Consensus 212 AdG~~ 216 (520)
|+|+.
T Consensus 119 atGAs 123 (322)
T KOG0404|consen 119 ATGAS 123 (322)
T ss_pred ecccc
Confidence 99973
No 265
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.68 E-value=0.002 Score=69.15 Aligned_cols=73 Identities=25% Similarity=0.302 Sum_probs=58.4
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCeEEEecCCcch-hhhhhcC
Q 009994 152 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSN-LRRSLCK 225 (520)
Q Consensus 152 ~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~-~~g~~~~~~ad~vV~AdG~~S~-vR~~l~~ 225 (520)
.++..++...+.+.+.+. |+++..++ |+++..+++++.+|++.+ .+|+..+++|+.||.|.|.+|. +.+.++.
T Consensus 124 ~vdp~~l~~al~~~A~~~-Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~ 199 (516)
T TIGR03377 124 TVDPFRLVAANVLDAQEH-GARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGL 199 (516)
T ss_pred EECHHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCC
Confidence 567778888999999888 78888776 999998888888888864 4566667889999999999974 4555554
No 266
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.67 E-value=0.00025 Score=72.03 Aligned_cols=108 Identities=20% Similarity=0.302 Sum_probs=70.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCC--CeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEEC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDG--RRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKD 131 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G--~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 131 (520)
...|+|||||.+|+.+|..|+++- .+|+||||+.... ++|- | .+...
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl-------~~pl----L---------~eva~----------- 51 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL-------FTPL----L---------YEVAT----------- 51 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc-------cchh----h---------hhhhc-----------
Confidence 457999999999999999999975 9999999986321 1111 0 00000
Q ss_pred CccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEE
Q 009994 132 GKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIV 211 (520)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~ 211 (520)
| .++......-+++.++..+++.+..++|+++..+..+| ++ .++. .+..|++|.
T Consensus 52 g-------------------~l~~~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V---~~--~~~~--~i~YD~LVv 105 (405)
T COG1252 52 G-------------------TLSESEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKKV---TL--ADLG--EISYDYLVV 105 (405)
T ss_pred C-------------------CCChhheeccHHHHhcccCceEEEEEEEEEEcccCCEE---Ee--CCCc--cccccEEEE
Confidence 0 01111122223444444446999999999999887753 33 3333 356999999
Q ss_pred ecCCcch
Q 009994 212 CDGCFSN 218 (520)
Q Consensus 212 AdG~~S~ 218 (520)
|.|+...
T Consensus 106 alGs~~~ 112 (405)
T COG1252 106 ALGSETN 112 (405)
T ss_pred ecCCcCC
Confidence 9997654
No 267
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.66 E-value=0.0024 Score=64.29 Aligned_cols=62 Identities=13% Similarity=0.256 Sum_probs=49.4
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcch
Q 009994 151 RSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 218 (520)
Q Consensus 151 ~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~ 218 (520)
..++...+...|.+.+.+. |+++..++ |+++..+++++.+|. ..+| +++||.||.|+|+++.
T Consensus 132 g~v~p~~l~~~l~~~~~~~-g~~~~~~~~v~~i~~~~~~~~~v~--~~~g---~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 132 AHVDPRALLKALEKALEKL-GVEIIEHTEVQHIEIRGEKVTAIV--TPSG---DVQADQVVLAAGAWAG 194 (337)
T ss_pred ceEChHHHHHHHHHHHHHc-CCEEEccceEEEEEeeCCEEEEEE--cCCC---EEECCEEEEcCChhhh
Confidence 4567788999999999987 78998886 999998777665443 4455 3669999999999875
No 268
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.66 E-value=4.9e-05 Score=85.78 Aligned_cols=36 Identities=33% Similarity=0.508 Sum_probs=33.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
...+|+||||||||+++|+.|++.|++|+|+|+.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~ 571 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEK 571 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 357999999999999999999999999999999853
No 269
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.64 E-value=5.8e-05 Score=78.52 Aligned_cols=38 Identities=26% Similarity=0.460 Sum_probs=34.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTE 89 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~ 89 (520)
++++||+|||+|.+|+.+|..|++.|.+|+++||+...
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~y 39 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYY 39 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCc
Confidence 45799999999999999999999999999999998643
No 270
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.64 E-value=0.0025 Score=65.61 Aligned_cols=61 Identities=16% Similarity=0.216 Sum_probs=47.4
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcch
Q 009994 151 RSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 218 (520)
Q Consensus 151 ~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~ 218 (520)
..++...+...|.+.+.+ |+++++++ |+++..+++. +.+++.+|+. +.||.||.|+|.++.
T Consensus 130 g~idp~~~~~~l~~~~~~--G~~i~~~~~V~~i~~~~~~---~~v~t~~g~~--~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGI--RLTLHFNTEITSLERDGEG---WQLLDANGEV--IAASVVVLANGAQAG 191 (381)
T ss_pred cccChHHHHHHHHhccCC--CcEEEeCCEEEEEEEcCCe---EEEEeCCCCE--EEcCEEEEcCCcccc
Confidence 356777889999988876 68888876 9999876664 4566667763 569999999999974
No 271
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.63 E-value=0.00062 Score=72.88 Aligned_cols=96 Identities=25% Similarity=0.368 Sum_probs=70.1
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.. ..
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l---------~~---------------------------------- 389 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADEL---------KA---------------------------------- 389 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcC---------Ch----------------------------------
Confidence 48999999999999999999999999999976310 00
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeC-CCcEEEEecCeEEEe
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTK-DGQELRAYAPLTIVC 212 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~-~g~~~~~~ad~vV~A 212 (520)
.+.+.+.+++..|+.++.++ ++++..+++++.+|++.+. +|+..++.+|.||.|
T Consensus 390 ------------------------~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a 445 (515)
T TIGR03140 390 ------------------------DKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQ 445 (515)
T ss_pred ------------------------hHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEE
Confidence 00122333333489999887 8888776677777777653 455556889999999
Q ss_pred cCCcc
Q 009994 213 DGCFS 217 (520)
Q Consensus 213 dG~~S 217 (520)
.|...
T Consensus 446 ~G~~P 450 (515)
T TIGR03140 446 IGLVP 450 (515)
T ss_pred eCCcC
Confidence 99654
No 272
>PLN02568 polyamine oxidase
Probab=97.61 E-value=0.0001 Score=78.88 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=34.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCC-----CeEEEEccCCCCC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDG-----RRVHVIERDVTEP 90 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G-----~~V~v~Er~~~~~ 90 (520)
++..||+|||||++||++|..|++.| ++|+|+|++....
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~G 46 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIG 46 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcC
Confidence 34579999999999999999999888 8999999987543
No 273
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.61 E-value=0.00062 Score=72.05 Aligned_cols=102 Identities=17% Similarity=0.251 Sum_probs=69.2
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.. + + .+.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~i--------l-~---------~~d---------------------- 214 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQV--------I-P---------AAD---------------------- 214 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC--------C-C---------cCC----------------------
Confidence 47999999999999999999999999999987521 0 0 000
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEec
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 213 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~Ad 213 (520)
..+.+.+.+.+++. +.+..++ ++++..+++.+. +++...+|+..++.+|.||.|.
T Consensus 215 ---------------------~~~~~~~~~~l~~~--v~i~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~i~~D~vi~a~ 270 (471)
T PRK06467 215 ---------------------KDIVKVFTKRIKKQ--FNIMLETKVTAVEAKEDGIY-VTMEGKKAPAEPQRYDAVLVAV 270 (471)
T ss_pred ---------------------HHHHHHHHHHHhhc--eEEEcCCEEEEEEEcCCEEE-EEEEeCCCcceEEEeCEEEEee
Confidence 11333344444443 7777776 888876655432 4443333434567899999999
Q ss_pred CCcchhh
Q 009994 214 GCFSNLR 220 (520)
Q Consensus 214 G~~S~vR 220 (520)
|...+..
T Consensus 271 G~~pn~~ 277 (471)
T PRK06467 271 GRVPNGK 277 (471)
T ss_pred cccccCC
Confidence 9887653
No 274
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.60 E-value=0.00011 Score=66.35 Aligned_cols=35 Identities=43% Similarity=0.657 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhhC--CCeEEEEccCCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKD--GRRVHVIERDVT 88 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~--G~~V~v~Er~~~ 88 (520)
+.||+|||||-+||++|+..+++ ..+|.|+|..-.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVa 112 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVA 112 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeec
Confidence 56999999999999999999854 589999998753
No 275
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.60 E-value=6.8e-05 Score=75.68 Aligned_cols=36 Identities=31% Similarity=0.544 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTE 89 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~ 89 (520)
.-+++|||||+||+++|+.|++.|++|.|+||.++-
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsi 159 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSI 159 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 457999999999999999999999999999999754
No 276
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.60 E-value=0.0012 Score=69.14 Aligned_cols=97 Identities=18% Similarity=0.181 Sum_probs=68.5
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||||++|+.+|..|++.|.+|+|+|+.+.. + +. .
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~--------l-~~---------~----------------------- 196 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI--------L-PR---------E----------------------- 196 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc--------C-CC---------C-----------------------
Confidence 47999999999999999999999999999997521 0 00 0
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEec
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 213 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~Ad 213 (520)
...+...+.+.+++. +++++.++ ++++..+++. +.+.. +|+ ++.+|.||.|.
T Consensus 197 --------------------~~~~~~~~~~~l~~~-GI~i~~~~~V~~i~~~~~~---v~v~~-~g~--~i~~D~viva~ 249 (438)
T PRK07251 197 --------------------EPSVAALAKQYMEED-GITFLLNAHTTEVKNDGDQ---VLVVT-EDE--TYRFDALLYAT 249 (438)
T ss_pred --------------------CHHHHHHHHHHHHHc-CCEEEcCCEEEEEEecCCE---EEEEE-CCe--EEEcCEEEEee
Confidence 011333444555555 89999886 8888765554 33333 344 46699999999
Q ss_pred CCcchh
Q 009994 214 GCFSNL 219 (520)
Q Consensus 214 G~~S~v 219 (520)
|.....
T Consensus 250 G~~p~~ 255 (438)
T PRK07251 250 GRKPNT 255 (438)
T ss_pred CCCCCc
Confidence 987653
No 277
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.59 E-value=9.5e-05 Score=77.69 Aligned_cols=38 Identities=47% Similarity=0.600 Sum_probs=33.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhh--CCCeEEEEccCCCC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGK--DGRRVHVIERDVTE 89 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~--~G~~V~v~Er~~~~ 89 (520)
....+|+||||||||+.+|..|++ .|++|+|+||.+.+
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p 63 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP 63 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence 345689999999999999999987 79999999999754
No 278
>PLN02507 glutathione reductase
Probab=97.59 E-value=0.001 Score=70.78 Aligned_cols=98 Identities=19% Similarity=0.299 Sum_probs=70.3
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.. +. ++.
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~----------------l~--~~d---------------------- 243 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELP----------------LR--GFD---------------------- 243 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCc----------------Cc--ccC----------------------
Confidence 47999999999999999999999999999987410 00 000
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEec
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 213 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~Ad 213 (520)
..+...+.+.+++. +++++.++ |.++..+++. +.+...+|++ +.+|.||.|.
T Consensus 244 ---------------------~~~~~~l~~~l~~~-GI~i~~~~~V~~i~~~~~~---~~v~~~~g~~--i~~D~vl~a~ 296 (499)
T PLN02507 244 ---------------------DEMRAVVARNLEGR-GINLHPRTNLTQLTKTEGG---IKVITDHGEE--FVADVVLFAT 296 (499)
T ss_pred ---------------------HHHHHHHHHHHHhC-CCEEEeCCEEEEEEEeCCe---EEEEECCCcE--EEcCEEEEee
Confidence 11333344455555 89999886 8888766554 3445556654 6699999999
Q ss_pred CCcchh
Q 009994 214 GCFSNL 219 (520)
Q Consensus 214 G~~S~v 219 (520)
|...+.
T Consensus 297 G~~pn~ 302 (499)
T PLN02507 297 GRAPNT 302 (499)
T ss_pred cCCCCC
Confidence 987665
No 279
>PRK12831 putative oxidoreductase; Provisional
Probab=97.58 E-value=7.8e-05 Score=78.60 Aligned_cols=36 Identities=31% Similarity=0.377 Sum_probs=33.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
....||+||||||+|+++|..|++.|++|+|+|+..
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~ 173 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALH 173 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 345799999999999999999999999999999875
No 280
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.58 E-value=0.00046 Score=67.08 Aligned_cols=35 Identities=23% Similarity=0.486 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
...+|+|||+|++||++|+.|+++ .+|+|+|.+..
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~r 41 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRR 41 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEecccc
Confidence 457899999999999999999987 89999998754
No 281
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.57 E-value=0.0014 Score=69.00 Aligned_cols=100 Identities=19% Similarity=0.182 Sum_probs=70.2
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||||..|+-+|..|++.|.+|+|+|+.+.. +. ++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~i----------------l~--~~d---------------------- 206 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERV----------------LR--SFD---------------------- 206 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC----------------Cc--ccC----------------------
Confidence 47999999999999999999999999999987420 00 000
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEec
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 213 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~Ad 213 (520)
..+.+.+.+.+++. +++++.++ ++++..+++.. +.+...+|+ .++.+|.||.|.
T Consensus 207 ---------------------~~~~~~~~~~l~~~-gI~i~~~~~v~~i~~~~~~~--~~v~~~~g~-~~i~~D~vi~a~ 261 (450)
T TIGR01421 207 ---------------------SMISETITEEYEKE-GINVHKLSKPVKVEKTVEGK--LVIHFEDGK-SIDDVDELIWAI 261 (450)
T ss_pred ---------------------HHHHHHHHHHHHHc-CCEEEcCCEEEEEEEeCCce--EEEEECCCc-EEEEcCEEEEee
Confidence 11334445555555 89999886 88887654431 334445563 347799999999
Q ss_pred CCcchh
Q 009994 214 GCFSNL 219 (520)
Q Consensus 214 G~~S~v 219 (520)
|...+.
T Consensus 262 G~~pn~ 267 (450)
T TIGR01421 262 GRKPNT 267 (450)
T ss_pred CCCcCc
Confidence 987654
No 282
>PRK06116 glutathione reductase; Validated
Probab=97.56 E-value=0.00084 Score=70.71 Aligned_cols=99 Identities=19% Similarity=0.246 Sum_probs=70.3
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||+|+.|+-+|..|++.|.+|+++++.+.. +. . ..
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~--------l~--------~--~~---------------------- 207 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP--------LR--------G--FD---------------------- 207 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC--------cc--------c--cC----------------------
Confidence 47999999999999999999999999999987421 00 0 00
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEec
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 213 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~Ad 213 (520)
..+.+.+.+.+++. +++++.++ |.++..+++.. +.+...+|++ +.+|.||.|.
T Consensus 208 ---------------------~~~~~~l~~~L~~~-GV~i~~~~~V~~i~~~~~g~--~~v~~~~g~~--i~~D~Vv~a~ 261 (450)
T PRK06116 208 ---------------------PDIRETLVEEMEKK-GIRLHTNAVPKAVEKNADGS--LTLTLEDGET--LTVDCLIWAI 261 (450)
T ss_pred ---------------------HHHHHHHHHHHHHC-CcEEECCCEEEEEEEcCCce--EEEEEcCCcE--EEeCEEEEee
Confidence 01334444555555 89999886 98988655431 3445556754 5699999999
Q ss_pred CCcchh
Q 009994 214 GCFSNL 219 (520)
Q Consensus 214 G~~S~v 219 (520)
|.....
T Consensus 262 G~~p~~ 267 (450)
T PRK06116 262 GREPNT 267 (450)
T ss_pred CCCcCC
Confidence 976554
No 283
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.56 E-value=0.0012 Score=65.32 Aligned_cols=95 Identities=20% Similarity=0.299 Sum_probs=67.1
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||+|++|+-+|..|++.|.+|+++++.+... ..
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~--------------------~~---------------------- 179 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR--------------------AE---------------------- 179 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC--------------------cC----------------------
Confidence 489999999999999999999999999999863100 00
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCeEEEe
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVC 212 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~-~~g~~~~~~ad~vV~A 212 (520)
..+. +.+++..+++++.++ ++++..++ ++..+++.. .+|+..++.+|.+|.|
T Consensus 180 ---------------------~~~~----~~l~~~~gv~~~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vi~a 233 (300)
T TIGR01292 180 ---------------------KILL----DRLRKNPNIEFLWNSTVKEIVGDN-KVEGVKIKNTVTGEEEELKVDGVFIA 233 (300)
T ss_pred ---------------------HHHH----HHHHhCCCeEEEeccEEEEEEccC-cEEEEEEEecCCCceEEEEccEEEEe
Confidence 0112 233333479998876 88887644 455566544 3465567889999999
Q ss_pred cCCcc
Q 009994 213 DGCFS 217 (520)
Q Consensus 213 dG~~S 217 (520)
.|...
T Consensus 234 ~G~~~ 238 (300)
T TIGR01292 234 IGHEP 238 (300)
T ss_pred eCCCC
Confidence 99553
No 284
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.56 E-value=8.8e-05 Score=71.32 Aligned_cols=34 Identities=38% Similarity=0.655 Sum_probs=32.3
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
+|++|||||.+|+.+|..|+++|.+|+|+||++.
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~H 35 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNH 35 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEecccc
Confidence 7999999999999999999999999999999864
No 285
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.55 E-value=0.00039 Score=70.18 Aligned_cols=56 Identities=23% Similarity=0.348 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcc
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFS 217 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S 217 (520)
...+.+++.+++. |+++++.+ |.+++..++.+.+|. ..+|++ +.+|.||.|-|..+
T Consensus 174 ~vvkni~~~l~~~-G~ei~f~t~VeDi~~~~~~~~~v~--~~~g~~--i~~~~vvlA~Grsg 230 (486)
T COG2509 174 KVVKNIREYLESL-GGEIRFNTEVEDIEIEDNEVLGVK--LTKGEE--IEADYVVLAPGRSG 230 (486)
T ss_pred HHHHHHHHHHHhc-CcEEEeeeEEEEEEecCCceEEEE--ccCCcE--EecCEEEEccCcch
Confidence 5678899999998 69999988 999998887655443 566764 56999999999765
No 286
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.53 E-value=0.00047 Score=70.80 Aligned_cols=34 Identities=24% Similarity=0.465 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHhhC--CCeEEEEccCCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKD--GRRVHVIERDVT 88 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~--G~~V~v~Er~~~ 88 (520)
.+|+|||||+||+.+|..|++. ..+|+|+++++.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence 4899999999999999999885 468999999863
No 287
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.52 E-value=0.0022 Score=67.43 Aligned_cols=98 Identities=18% Similarity=0.303 Sum_probs=69.3
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||+|+.|+-+|..|++.|.+|+|+|+.+.. +. ++.
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~--------l~----------~~d---------------------- 206 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELI--------LR----------GFD---------------------- 206 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCC--------Cc----------ccC----------------------
Confidence 46999999999999999999999999999986421 00 000
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEec
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 213 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~Ad 213 (520)
..+...+.+.+++. +++++.++ +.++..+++. +.+...+|+ ++.+|.||.|.
T Consensus 207 ---------------------~~~~~~l~~~l~~~-gV~i~~~~~v~~i~~~~~~---~~v~~~~g~--~i~~D~viva~ 259 (446)
T TIGR01424 207 ---------------------DDMRALLARNMEGR-GIRIHPQTSLTSITKTDDG---LKVTLSHGE--EIVADVVLFAT 259 (446)
T ss_pred ---------------------HHHHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCe---EEEEEcCCc--EeecCEEEEee
Confidence 11333444555555 89999886 8888765553 334445565 36699999999
Q ss_pred CCcchh
Q 009994 214 GCFSNL 219 (520)
Q Consensus 214 G~~S~v 219 (520)
|...+.
T Consensus 260 G~~pn~ 265 (446)
T TIGR01424 260 GRSPNT 265 (446)
T ss_pred CCCcCC
Confidence 987654
No 288
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=97.52 E-value=0.0017 Score=67.32 Aligned_cols=55 Identities=24% Similarity=0.172 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcch
Q 009994 158 FIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 218 (520)
Q Consensus 158 l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~ 218 (520)
+...+...+... +.+++.++ |+++..++++ |++...+|+. +.||.||.|......
T Consensus 211 ~~~~~~~~~~~~-g~~i~l~~~V~~I~~~~~~---v~v~~~~g~~--~~ad~VI~a~p~~~l 266 (450)
T PF01593_consen 211 LSLALALAAEEL-GGEIRLNTPVTRIEREDGG---VTVTTEDGET--IEADAVISAVPPSVL 266 (450)
T ss_dssp THHHHHHHHHHH-GGGEESSEEEEEEEEESSE---EEEEETTSSE--EEESEEEE-S-HHHH
T ss_pred hhHHHHHHHhhc-CceeecCCcceeccccccc---cccccccceE--EecceeeecCchhhh
Confidence 333344433333 45888888 9999998874 5677788874 569999998875543
No 289
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.52 E-value=0.00026 Score=70.65 Aligned_cols=69 Identities=30% Similarity=0.375 Sum_probs=48.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeE--EEEccCCCCCCceee-----e--------eec---c---chHHHHHhcC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRV--HVIERDVTEPDRIVG-----E--------LLQ---P---GGYLKLVELG 110 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V--~v~Er~~~~~~~~~g-----~--------~l~---~---~~~~~l~~lG 110 (520)
....+|+|||||++||++|++|++.+-+| +|+|..+......+. . .+. + ..+..+.++|
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLG 88 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLG 88 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcC
Confidence 44679999999999999999999998765 569998654322111 1 112 1 3346678899
Q ss_pred chhHHhhccc
Q 009994 111 LEDCVEEIDA 120 (520)
Q Consensus 111 l~~~l~~~~~ 120 (520)
+++++..++.
T Consensus 89 l~~e~~~i~~ 98 (491)
T KOG1276|consen 89 LEDELQPIDI 98 (491)
T ss_pred ccceeeecCC
Confidence 9877766544
No 290
>PRK10262 thioredoxin reductase; Provisional
Probab=97.52 E-value=0.0012 Score=66.09 Aligned_cols=100 Identities=20% Similarity=0.238 Sum_probs=71.0
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||+|..|+-+|..|++.|.+|+++++.+.. .. .
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~---------~~-----------~---------------------- 184 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF---------RA-----------E---------------------- 184 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc---------CC-----------C----------------------
Confidence 47999999999999999999999999999987410 00 0
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeC--CCcEEEEecCeEEE
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTK--DGQELRAYAPLTIV 211 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~--~g~~~~~~ad~vV~ 211 (520)
..+.+.+.+.+++. ++++..++ ++++..+++++.+|++... +++..++.+|.||.
T Consensus 185 ---------------------~~~~~~~~~~l~~~-gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~ 242 (321)
T PRK10262 185 ---------------------KILIKRLMDKVENG-NIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFV 242 (321)
T ss_pred ---------------------HHHHHHHHhhccCC-CeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEE
Confidence 01223334444554 79998876 8888766656666776643 23445688999999
Q ss_pred ecCCcch
Q 009994 212 CDGCFSN 218 (520)
Q Consensus 212 AdG~~S~ 218 (520)
|.|...+
T Consensus 243 a~G~~p~ 249 (321)
T PRK10262 243 AIGHSPN 249 (321)
T ss_pred EeCCccC
Confidence 9996543
No 291
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.50 E-value=0.00012 Score=75.74 Aligned_cols=34 Identities=29% Similarity=0.600 Sum_probs=32.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
++||+|||+|++|+++|+.|+++|.+|+|+|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5899999999999999999999999999999874
No 292
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.48 E-value=0.0012 Score=69.79 Aligned_cols=101 Identities=24% Similarity=0.329 Sum_probs=69.2
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||+|+.|+-+|..|++.|.+|+++|+.+.. + + .+.
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~--------l-~---------~~d---------------------- 209 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI--------L-P---------LED---------------------- 209 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc--------C-c---------chh----------------------
Confidence 47999999999999999999999999999987421 0 0 000
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEec
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 213 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~Ad 213 (520)
..+...+.+.+++. +.++.++ ++++..+++ ..+++...+++..++.+|.||.|.
T Consensus 210 ---------------------~~~~~~~~~~l~~~--I~i~~~~~v~~i~~~~~--~~v~~~~~~~~~~~i~~D~vi~a~ 264 (460)
T PRK06292 210 ---------------------PEVSKQAQKILSKE--FKIKLGAKVTSVEKSGD--EKVEELEKGGKTETIEADYVLVAT 264 (460)
T ss_pred ---------------------HHHHHHHHHHHhhc--cEEEcCCEEEEEEEcCC--ceEEEEEcCCceEEEEeCEEEEcc
Confidence 01333444444443 7888776 888876544 234443445555567899999999
Q ss_pred CCcchhh
Q 009994 214 GCFSNLR 220 (520)
Q Consensus 214 G~~S~vR 220 (520)
|...+..
T Consensus 265 G~~p~~~ 271 (460)
T PRK06292 265 GRRPNTD 271 (460)
T ss_pred CCccCCC
Confidence 9876543
No 293
>PLN02785 Protein HOTHEAD
Probab=97.48 E-value=0.00026 Score=76.54 Aligned_cols=36 Identities=42% Similarity=0.561 Sum_probs=32.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
+..||+||||||.+|+.+|..|++ +.+|+|||+...
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 456999999999999999999999 699999999863
No 294
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.47 E-value=0.00013 Score=81.25 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~ 86 (520)
...+|+||||||||+++|+.|++.|++|+|+|+.
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 3568999999999999999999999999999985
No 295
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.46 E-value=0.00014 Score=80.33 Aligned_cols=38 Identities=37% Similarity=0.523 Sum_probs=34.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTE 89 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~ 89 (520)
....+|+|||||++||++|+.|++.|++|+|+|++...
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~ 273 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARP 273 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccC
Confidence 45679999999999999999999999999999998654
No 296
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.44 E-value=0.0016 Score=68.87 Aligned_cols=99 Identities=21% Similarity=0.314 Sum_probs=70.5
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+.. + +. ..
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~--------l-~~---------~d---------------------- 217 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRV--------L-PG---------ED---------------------- 217 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcC--------C-CC---------CC----------------------
Confidence 36999999999999999999999999999987421 0 00 00
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEec
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 213 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~Ad 213 (520)
..+...+.+.+++. +++++.++ +.++..+++. +.+...+|++ +.+|.||.|.
T Consensus 218 ---------------------~~~~~~l~~~L~~~-gV~i~~~~~v~~v~~~~~~---~~v~~~~g~~--l~~D~vl~a~ 270 (466)
T PRK07845 218 ---------------------ADAAEVLEEVFARR-GMTVLKRSRAESVERTGDG---VVVTLTDGRT--VEGSHALMAV 270 (466)
T ss_pred ---------------------HHHHHHHHHHHHHC-CcEEEcCCEEEEEEEeCCE---EEEEECCCcE--EEecEEEEee
Confidence 01233445555555 89999886 8888766654 3444556654 6699999999
Q ss_pred CCcchhh
Q 009994 214 GCFSNLR 220 (520)
Q Consensus 214 G~~S~vR 220 (520)
|...+..
T Consensus 271 G~~pn~~ 277 (466)
T PRK07845 271 GSVPNTA 277 (466)
T ss_pred cCCcCCC
Confidence 9876653
No 297
>PRK07846 mycothione reductase; Reviewed
Probab=97.44 E-value=0.0014 Score=68.87 Aligned_cols=97 Identities=28% Similarity=0.393 Sum_probs=67.0
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.. + + .+.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l--------l-~---------~~d---------------------- 206 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRL--------L-R---------HLD---------------------- 206 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc--------c-c---------ccC----------------------
Confidence 57999999999999999999999999999987421 0 0 000
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEec
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 213 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~Ad 213 (520)
.++.+.+.+.. +. ++.++.++ ++++..+++. +.+...+|+ ++.+|.||.|.
T Consensus 207 ---------------------~~~~~~l~~l~-~~-~v~i~~~~~v~~i~~~~~~---v~v~~~~g~--~i~~D~vl~a~ 258 (451)
T PRK07846 207 ---------------------DDISERFTELA-SK-RWDVRLGRNVVGVSQDGSG---VTLRLDDGS--TVEADVLLVAT 258 (451)
T ss_pred ---------------------HHHHHHHHHHH-hc-CeEEEeCCEEEEEEEcCCE---EEEEECCCc--EeecCEEEEEE
Confidence 01122222222 23 68888776 8888766553 445555665 36699999999
Q ss_pred CCcchh
Q 009994 214 GCFSNL 219 (520)
Q Consensus 214 G~~S~v 219 (520)
|.....
T Consensus 259 G~~pn~ 264 (451)
T PRK07846 259 GRVPNG 264 (451)
T ss_pred CCccCc
Confidence 987654
No 298
>PLN02676 polyamine oxidase
Probab=97.43 E-value=0.00018 Score=76.20 Aligned_cols=36 Identities=36% Similarity=0.545 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCC-eEEEEccCCCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDVTE 89 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~~~ 89 (520)
.+||+|||||++||++|..|+++|. +|+|+|++...
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~ 62 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRI 62 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence 4699999999999999999999998 69999998653
No 299
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.42 E-value=0.00016 Score=81.37 Aligned_cols=36 Identities=42% Similarity=0.573 Sum_probs=32.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
...+|+||||||||+++|..|++.|++|+|+|+.+.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~ 573 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREEN 573 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence 346899999999999999999999999999999753
No 300
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.41 E-value=0.00019 Score=75.52 Aligned_cols=35 Identities=40% Similarity=0.508 Sum_probs=32.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
...+|+|||||++|+++|..|++.|++|+|+|+..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~ 166 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALH 166 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 45799999999999999999999999999999975
No 301
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.40 E-value=0.00017 Score=79.51 Aligned_cols=36 Identities=42% Similarity=0.569 Sum_probs=33.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
...+|+|||||||||++|..|++.|++|+|+|+.+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~ 361 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE 361 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 346999999999999999999999999999999754
No 302
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.38 E-value=0.0014 Score=73.58 Aligned_cols=98 Identities=17% Similarity=0.244 Sum_probs=68.2
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.. +.+ .+.
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l----------------l~~-~ld---------------------- 181 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL----------------MAK-QLD---------------------- 181 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch----------------hhh-hcC----------------------
Confidence 46999999999999999999999999999986410 000 000
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEec
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 213 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~Ad 213 (520)
......+.+.+++. |++++.++ ++++..++ .+.+| ...+|++ +.+|+||.|.
T Consensus 182 ---------------------~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~-~~~~v--~~~dG~~--i~~D~Vi~a~ 234 (785)
T TIGR02374 182 ---------------------QTAGRLLQRELEQK-GLTFLLEKDTVEIVGAT-KADRI--RFKDGSS--LEADLIVMAA 234 (785)
T ss_pred ---------------------HHHHHHHHHHHHHc-CCEEEeCCceEEEEcCC-ceEEE--EECCCCE--EEcCEEEECC
Confidence 01233344555555 89999987 88876543 33333 4567764 5699999999
Q ss_pred CCcch
Q 009994 214 GCFSN 218 (520)
Q Consensus 214 G~~S~ 218 (520)
|...+
T Consensus 235 G~~Pn 239 (785)
T TIGR02374 235 GIRPN 239 (785)
T ss_pred CCCcC
Confidence 97754
No 303
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.37 E-value=0.0022 Score=67.29 Aligned_cols=97 Identities=16% Similarity=0.231 Sum_probs=69.6
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||+|+.|+-+|..|++.|.+|+|+|+.+.. + +. .
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~--------l-~~---------~----------------------- 197 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLF--------L-PR---------E----------------------- 197 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC--------C-CC---------c-----------------------
Confidence 47999999999999999999999999999986311 0 00 0
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEec
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 213 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~Ad 213 (520)
...+.+.+.+.+++. |++++.++ +.++..+++. +.+...+++ +.+|.||.|.
T Consensus 198 --------------------~~~~~~~l~~~l~~~-gV~v~~~~~v~~i~~~~~~---v~v~~~~g~---i~~D~vl~a~ 250 (441)
T PRK08010 198 --------------------DRDIADNIATILRDQ-GVDIILNAHVERISHHENQ---VQVHSEHAQ---LAVDALLIAS 250 (441)
T ss_pred --------------------CHHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCE---EEEEEcCCe---EEeCEEEEee
Confidence 011334455566665 89999886 8888776553 445444443 5699999999
Q ss_pred CCcchh
Q 009994 214 GCFSNL 219 (520)
Q Consensus 214 G~~S~v 219 (520)
|...+.
T Consensus 251 G~~pn~ 256 (441)
T PRK08010 251 GRQPAT 256 (441)
T ss_pred cCCcCC
Confidence 987764
No 304
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.37 E-value=0.00088 Score=75.48 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHhhC----CCeEEEEccCCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKD----GRRVHVIERDVT 88 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~----G~~V~v~Er~~~ 88 (520)
.+|+|||+|+||+.+|..|.+. +++|+|+++.+.
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~ 41 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPR 41 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCC
Confidence 4899999999999999999764 579999999864
No 305
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.36 E-value=0.0007 Score=76.04 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=28.1
Q ss_pred EEEECCCHHHHHHHHHHhhC---CCeEEEEccCCC
Q 009994 57 VIIVGAGVAGAALAHTLGKD---GRRVHVIERDVT 88 (520)
Q Consensus 57 V~IVGaG~aGl~~A~~La~~---G~~V~v~Er~~~ 88 (520)
|+|||||+||+.+|..|.+. +++|+|+|+.+.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~ 35 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPH 35 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCC
Confidence 68999999999999998774 579999999864
No 306
>PLN02529 lysine-specific histone demethylase 1
Probab=97.36 E-value=0.00028 Score=77.47 Aligned_cols=37 Identities=46% Similarity=0.541 Sum_probs=33.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
....+|+|||||++||++|..|+++|++|+|+|++..
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~ 194 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNR 194 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 3467999999999999999999999999999999764
No 307
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.35 E-value=0.0016 Score=73.51 Aligned_cols=100 Identities=24% Similarity=0.305 Sum_probs=70.0
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-.++|||||+.|+-+|..|++.|.+|+|+|+.+. + +.. .+.
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~---------l-------l~~-~ld---------------------- 186 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPM---------L-------MAE-QLD---------------------- 186 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecccc---------c-------hhh-hcC----------------------
Confidence 3699999999999999999999999999998741 0 000 000
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeC-CeEEEEEEEeCCCcEEEEecCeEEEe
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEEN-GTIKGVQYKTKDGQELRAYAPLTIVC 212 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~-~~v~gv~v~~~~g~~~~~~ad~vV~A 212 (520)
....+.+.+.+++. ||+++.++ ++++..++ +.. ..+...+|++ +.+|+||.|
T Consensus 187 ---------------------~~~~~~l~~~L~~~-GV~v~~~~~v~~I~~~~~~~~--~~v~~~dG~~--i~~D~Vv~A 240 (847)
T PRK14989 187 ---------------------QMGGEQLRRKIESM-GVRVHTSKNTLEIVQEGVEAR--KTMRFADGSE--LEVDFIVFS 240 (847)
T ss_pred ---------------------HHHHHHHHHHHHHC-CCEEEcCCeEEEEEecCCCce--EEEEECCCCE--EEcCEEEEC
Confidence 11234455555666 89999987 88886543 222 3344567774 569999999
Q ss_pred cCCcchh
Q 009994 213 DGCFSNL 219 (520)
Q Consensus 213 dG~~S~v 219 (520)
.|...+.
T Consensus 241 ~G~rPn~ 247 (847)
T PRK14989 241 TGIRPQD 247 (847)
T ss_pred CCcccCc
Confidence 9987653
No 308
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.35 E-value=0.00027 Score=73.41 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHH-hhCCCeEEEEccCCCC
Q 009994 54 PTDVIIVGAGVAGAALAHTL-GKDGRRVHVIERDVTE 89 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~L-a~~G~~V~v~Er~~~~ 89 (520)
...|+||||||||+.+|..| ++.|++|+|+||.+.+
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~p 75 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNP 75 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 46899999999999999965 5679999999999754
No 309
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.34 E-value=0.00023 Score=81.65 Aligned_cols=35 Identities=40% Similarity=0.335 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
..+|+|||||||||++|..|++.|++|+|+|+...
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~ 464 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHV 464 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 46999999999999999999999999999999754
No 310
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.34 E-value=0.002 Score=67.32 Aligned_cols=96 Identities=25% Similarity=0.368 Sum_probs=66.9
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||||++|+-+|..|++.|.+|+++++.+.. +.+ .
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~--------~~~-------~-------------------------- 176 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI--------LNK-------L-------------------------- 176 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc--------Ccc-------c--------------------------
Confidence 47999999999999999999999999999987421 000 0
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEec
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 213 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~Ad 213 (520)
+ ...+.+.+.+.+++. |++++.++ +.++..++. + +...+|++ +.+|.+|.|.
T Consensus 177 ------------------~-~~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~-~----v~~~~g~~--i~~D~vi~a~ 229 (427)
T TIGR03385 177 ------------------F-DEEMNQIVEEELKKH-EINLRLNEEVDSIEGEER-V----KVFTSGGV--YQADMVILAT 229 (427)
T ss_pred ------------------c-CHHHHHHHHHHHHHc-CCEEEeCCEEEEEecCCC-E----EEEcCCCE--EEeCEEEECC
Confidence 0 012334455555555 79998876 888865432 2 22345654 6699999999
Q ss_pred CCcch
Q 009994 214 GCFSN 218 (520)
Q Consensus 214 G~~S~ 218 (520)
|....
T Consensus 230 G~~p~ 234 (427)
T TIGR03385 230 GIKPN 234 (427)
T ss_pred CccCC
Confidence 98754
No 311
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.33 E-value=0.0043 Score=65.30 Aligned_cols=97 Identities=27% Similarity=0.415 Sum_probs=66.1
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||||+.|+-+|..|++.|.+|+++|+.+.. +.. +.+
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~l----------------l~~--~d~--------------------- 210 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL----------------LRH--LDE--------------------- 210 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc----------------ccc--cCH---------------------
Confidence 47999999999999999999999999999986410 000 000
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEec
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 213 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~Ad 213 (520)
.+.+.+.+.. +. ++.++.++ ++++..+++. +.+...+|+ ++.+|.||.|.
T Consensus 211 ----------------------~~~~~l~~~~-~~-gI~i~~~~~V~~i~~~~~~---v~v~~~~g~--~i~~D~vl~a~ 261 (452)
T TIGR03452 211 ----------------------DISDRFTEIA-KK-KWDIRLGRNVTAVEQDGDG---VTLTLDDGS--TVTADVLLVAT 261 (452)
T ss_pred ----------------------HHHHHHHHHH-hc-CCEEEeCCEEEEEEEcCCe---EEEEEcCCC--EEEcCEEEEee
Confidence 1112222222 23 68888776 8888766554 344455665 46699999999
Q ss_pred CCcchh
Q 009994 214 GCFSNL 219 (520)
Q Consensus 214 G~~S~v 219 (520)
|.....
T Consensus 262 G~~pn~ 267 (452)
T TIGR03452 262 GRVPNG 267 (452)
T ss_pred ccCcCC
Confidence 976543
No 312
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.33 E-value=0.0018 Score=69.04 Aligned_cols=97 Identities=18% Similarity=0.246 Sum_probs=68.2
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCccc
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKST 135 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~~ 135 (520)
+|+|||||+.|+-+|..|++.|.+|+|+++.. . +. . +.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~--------l~--------~--~d----------------------- 221 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRSI-P--------LR--------G--FD----------------------- 221 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcCc-c--------cc--------c--CC-----------------------
Confidence 79999999999999999999999999998641 0 00 0 00
Q ss_pred cccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecC
Q 009994 136 RLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDG 214 (520)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG 214 (520)
..+.+.+.+.+++. +++++.++ +.++...++. +.+...+|++ +.+|.||.|.|
T Consensus 222 --------------------~~~~~~l~~~l~~~-GV~i~~~~~v~~v~~~~~~---~~v~~~~g~~--i~~D~vl~a~G 275 (499)
T PTZ00052 222 --------------------RQCSEKVVEYMKEQ-GTLFLEGVVPINIEKMDDK---IKVLFSDGTT--ELFDTVLYATG 275 (499)
T ss_pred --------------------HHHHHHHHHHHHHc-CCEEEcCCeEEEEEEcCCe---EEEEECCCCE--EEcCEEEEeeC
Confidence 01233444555555 79999887 7777765543 3344556764 56999999999
Q ss_pred Ccchhh
Q 009994 215 CFSNLR 220 (520)
Q Consensus 215 ~~S~vR 220 (520)
...+..
T Consensus 276 ~~pn~~ 281 (499)
T PTZ00052 276 RKPDIK 281 (499)
T ss_pred CCCCcc
Confidence 877653
No 313
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.32 E-value=0.0018 Score=68.70 Aligned_cols=99 Identities=16% Similarity=0.214 Sum_probs=67.2
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+++|||||+.|+-+|..|++.|.+|+|+++.. . + + ++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~--------l-~---------~~d---------------------- 219 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-L--------L-R---------GFD---------------------- 219 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEecc-c--------c-c---------ccC----------------------
Confidence 369999999999999999999999999998641 0 0 0 000
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCc-EEEEecCeEEEe
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQ-ELRAYAPLTIVC 212 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~-~~~~~ad~vV~A 212 (520)
..+.+.+.+.+++. |++++.++ +.++...++.+ .+++ .+++ ..++.+|.||.|
T Consensus 220 ---------------------~~~~~~l~~~L~~~-gV~i~~~~~v~~v~~~~~~~-~v~~--~~~~~~~~i~~D~vl~a 274 (484)
T TIGR01438 220 ---------------------QDCANKVGEHMEEH-GVKFKRQFVPIKVEQIEAKV-KVTF--TDSTNGIEEEYDTVLLA 274 (484)
T ss_pred ---------------------HHHHHHHHHHHHHc-CCEEEeCceEEEEEEcCCeE-EEEE--ecCCcceEEEeCEEEEE
Confidence 11333444555555 89999887 77877655532 2333 3332 235779999999
Q ss_pred cCCcchh
Q 009994 213 DGCFSNL 219 (520)
Q Consensus 213 dG~~S~v 219 (520)
.|.....
T Consensus 275 ~G~~pn~ 281 (484)
T TIGR01438 275 IGRDACT 281 (484)
T ss_pred ecCCcCC
Confidence 9976554
No 314
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.31 E-value=0.00027 Score=79.17 Aligned_cols=35 Identities=34% Similarity=0.472 Sum_probs=32.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
...+|+||||||||+++|..|++.|++|+|+|+..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~ 464 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALH 464 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45799999999999999999999999999999964
No 315
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.29 E-value=0.0039 Score=66.16 Aligned_cols=100 Identities=11% Similarity=0.183 Sum_probs=68.4
Q ss_pred CcEEEECCCHHHHHHHHHHhh---CCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEEC
Q 009994 55 TDVIIVGAGVAGAALAHTLGK---DGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKD 131 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~---~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 131 (520)
-+|+|||||+.|+-+|..++. .|.+|+|+|+.+.. |.. +
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i----------------l~~--~-------------------- 229 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI----------------LRG--F-------------------- 229 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc----------------ccc--c--------------------
Confidence 469999999999999976654 49999999987420 000 0
Q ss_pred CccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEE
Q 009994 132 GKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTI 210 (520)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV 210 (520)
...+.+.+.+.+++. +++++.++ ++++..+++.. +.+...+|+ ++.+|.||
T Consensus 230 -----------------------d~~~~~~l~~~L~~~-GI~i~~~~~v~~i~~~~~~~--~~v~~~~g~--~i~~D~vl 281 (486)
T TIGR01423 230 -----------------------DSTLRKELTKQLRAN-GINIMTNENPAKVTLNADGS--KHVTFESGK--TLDVDVVM 281 (486)
T ss_pred -----------------------CHHHHHHHHHHHHHc-CCEEEcCCEEEEEEEcCCce--EEEEEcCCC--EEEcCEEE
Confidence 012344555556655 89999987 88887654432 233344565 46799999
Q ss_pred EecCCcchhh
Q 009994 211 VCDGCFSNLR 220 (520)
Q Consensus 211 ~AdG~~S~vR 220 (520)
.|.|...+..
T Consensus 282 ~a~G~~Pn~~ 291 (486)
T TIGR01423 282 MAIGRVPRTQ 291 (486)
T ss_pred EeeCCCcCcc
Confidence 9999876653
No 316
>PRK14694 putative mercuric reductase; Provisional
Probab=97.29 E-value=0.0026 Score=67.38 Aligned_cols=96 Identities=19% Similarity=0.243 Sum_probs=67.3
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||+|+.|+-+|..|++.|.+|+|+++..- + +. ..
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~---------l-~~---------~~---------------------- 217 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRV---------L-SQ---------ED---------------------- 217 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCC---------C-CC---------CC----------------------
Confidence 4799999999999999999999999999986420 0 00 00
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEec
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 213 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~Ad 213 (520)
..+...+.+.+++. |++++.++ +.++..+++. +.+...++ ++.+|.||.|.
T Consensus 218 ---------------------~~~~~~l~~~l~~~-GI~v~~~~~v~~i~~~~~~---~~v~~~~~---~i~~D~vi~a~ 269 (468)
T PRK14694 218 ---------------------PAVGEAIEAAFRRE-GIEVLKQTQASEVDYNGRE---FILETNAG---TLRAEQLLVAT 269 (468)
T ss_pred ---------------------HHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCE---EEEEECCC---EEEeCEEEEcc
Confidence 11233445555555 89999886 8888765543 33444443 36799999999
Q ss_pred CCcchh
Q 009994 214 GCFSNL 219 (520)
Q Consensus 214 G~~S~v 219 (520)
|...+.
T Consensus 270 G~~pn~ 275 (468)
T PRK14694 270 GRTPNT 275 (468)
T ss_pred CCCCCc
Confidence 987765
No 317
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.27 E-value=0.00041 Score=70.51 Aligned_cols=34 Identities=41% Similarity=0.444 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
..+|+|||||++|+.+|..|++.|.+|+|+|+.+
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 51 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLP 51 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 3589999999999999999999999999999975
No 318
>PRK13748 putative mercuric reductase; Provisional
Probab=97.27 E-value=0.0039 Score=67.68 Aligned_cols=96 Identities=17% Similarity=0.260 Sum_probs=67.2
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||||+.|+-+|..|++.|.+|+|+++.. .+. . ..
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~---------~l~-~---------~d---------------------- 309 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARST---------LFF-R---------ED---------------------- 309 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc---------ccc-c---------cC----------------------
Confidence 479999999999999999999999999999752 000 0 00
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEec
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 213 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~Ad 213 (520)
..+...+.+.+++. |++++.++ +.++..+++. +.+...++ ++.+|.||.|.
T Consensus 310 ---------------------~~~~~~l~~~l~~~-gI~i~~~~~v~~i~~~~~~---~~v~~~~~---~i~~D~vi~a~ 361 (561)
T PRK13748 310 ---------------------PAIGEAVTAAFRAE-GIEVLEHTQASQVAHVDGE---FVLTTGHG---ELRADKLLVAT 361 (561)
T ss_pred ---------------------HHHHHHHHHHHHHC-CCEEEcCCEEEEEEecCCE---EEEEecCC---eEEeCEEEEcc
Confidence 01223344445555 89999886 8888766553 33444444 26799999999
Q ss_pred CCcchh
Q 009994 214 GCFSNL 219 (520)
Q Consensus 214 G~~S~v 219 (520)
|...+.
T Consensus 362 G~~pn~ 367 (561)
T PRK13748 362 GRAPNT 367 (561)
T ss_pred CCCcCC
Confidence 987655
No 319
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.27 E-value=0.0028 Score=66.57 Aligned_cols=97 Identities=29% Similarity=0.454 Sum_probs=66.6
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||||++|+-+|..|++.|.+|+++++.+.. + +. .
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~--------l-~~------~-------------------------- 188 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRI--------L-PD------S-------------------------- 188 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCccc--------C-ch------h--------------------------
Confidence 47999999999999999999999999999986411 0 00 0
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEec
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 213 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~Ad 213 (520)
+ ...+.+.+.+.+++. +++++.++ ++++..+ +++..+ ...++ ++.+|++|.|.
T Consensus 189 ------------------~-~~~~~~~l~~~l~~~-gI~v~~~~~v~~i~~~-~~~~~v--~~~~~---~i~~d~vi~a~ 242 (444)
T PRK09564 189 ------------------F-DKEITDVMEEELREN-GVELHLNEFVKSLIGE-DKVEGV--VTDKG---EYEADVVIVAT 242 (444)
T ss_pred ------------------c-CHHHHHHHHHHHHHC-CCEEEcCCEEEEEecC-CcEEEE--EeCCC---EEEcCEEEECc
Confidence 0 012444555666665 79998886 8888543 333323 23333 36799999999
Q ss_pred CCcch
Q 009994 214 GCFSN 218 (520)
Q Consensus 214 G~~S~ 218 (520)
|....
T Consensus 243 G~~p~ 247 (444)
T PRK09564 243 GVKPN 247 (444)
T ss_pred CCCcC
Confidence 97654
No 320
>PTZ00058 glutathione reductase; Provisional
Probab=97.26 E-value=0.0024 Score=68.76 Aligned_cols=101 Identities=16% Similarity=0.231 Sum_probs=68.6
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCc
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGK 133 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 133 (520)
.-+|+|||||..|+-+|..|++.|.+|+|+|+.+. ++.. +.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~----------------il~~--~d--------------------- 277 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNR----------------LLRK--FD--------------------- 277 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc----------------cccc--CC---------------------
Confidence 35799999999999999999999999999998741 0000 00
Q ss_pred cccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEe
Q 009994 134 STRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVC 212 (520)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~A 212 (520)
..+.+.+.+.+++. +++++.+. +.++..+++. ++.+...+++ .++.+|.||.|
T Consensus 278 ----------------------~~i~~~l~~~L~~~-GV~i~~~~~V~~I~~~~~~--~v~v~~~~~~-~~i~aD~VlvA 331 (561)
T PTZ00058 278 ----------------------ETIINELENDMKKN-NINIITHANVEEIEKVKEK--NLTIYLSDGR-KYEHFDYVIYC 331 (561)
T ss_pred ----------------------HHHHHHHHHHHHHC-CCEEEeCCEEEEEEecCCC--cEEEEECCCC-EEEECCEEEEC
Confidence 11333444555555 89999887 8888765432 2333333333 34679999999
Q ss_pred cCCcchh
Q 009994 213 DGCFSNL 219 (520)
Q Consensus 213 dG~~S~v 219 (520)
.|....+
T Consensus 332 ~Gr~Pn~ 338 (561)
T PTZ00058 332 VGRSPNT 338 (561)
T ss_pred cCCCCCc
Confidence 9976543
No 321
>PRK14727 putative mercuric reductase; Provisional
Probab=97.26 E-value=0.0021 Score=68.30 Aligned_cols=97 Identities=15% Similarity=0.244 Sum_probs=68.4
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||+|+.|+-+|..|++.|.+|+|+++.. . +. . ..
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~--------l~-~---------~d---------------------- 227 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARST-L--------LF-R---------ED---------------------- 227 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC-C--------CC-c---------ch----------------------
Confidence 479999999999999999999999999998742 0 00 0 00
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEec
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 213 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~Ad 213 (520)
..+.+.+.+.+++. +++++.++ ++++..+++. +.+...+++ +.+|.||.|.
T Consensus 228 ---------------------~~~~~~l~~~L~~~-GV~i~~~~~V~~i~~~~~~---~~v~~~~g~---i~aD~VlvA~ 279 (479)
T PRK14727 228 ---------------------PLLGETLTACFEKE-GIEVLNNTQASLVEHDDNG---FVLTTGHGE---LRAEKLLIST 279 (479)
T ss_pred ---------------------HHHHHHHHHHHHhC-CCEEEcCcEEEEEEEeCCE---EEEEEcCCe---EEeCEEEEcc
Confidence 01233444555555 89999886 8888766553 344444443 5699999999
Q ss_pred CCcchhh
Q 009994 214 GCFSNLR 220 (520)
Q Consensus 214 G~~S~vR 220 (520)
|...+..
T Consensus 280 G~~pn~~ 286 (479)
T PRK14727 280 GRHANTH 286 (479)
T ss_pred CCCCCcc
Confidence 9887653
No 322
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.26 E-value=0.0026 Score=65.79 Aligned_cols=102 Identities=27% Similarity=0.360 Sum_probs=71.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCc
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGK 133 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 133 (520)
..+|+|||+|+.|+.+|..|+++|++|+++|+.+.......
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~--------------------------------------- 176 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL--------------------------------------- 176 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh---------------------------------------
Confidence 36899999999999999999999999999999852110000
Q ss_pred cccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEe
Q 009994 134 STRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVC 212 (520)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~A 212 (520)
. ..+-..+.+.+++. +++++.++ ++++....+......+...+++ .+.+|+++.+
T Consensus 177 --------------------~-~~~~~~~~~~l~~~-gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~d~~~~~ 232 (415)
T COG0446 177 --------------------D-PEVAEELAELLEKY-GVELLLGTKVVGVEGKGNTLVVERVVGIDGE--EIKADLVIIG 232 (415)
T ss_pred --------------------h-HHHHHHHHHHHHHC-CcEEEeCCceEEEEcccCcceeeEEEEeCCc--EEEeeEEEEe
Confidence 0 12445555666666 69988887 8888876654332113344555 3569999999
Q ss_pred cCCcch
Q 009994 213 DGCFSN 218 (520)
Q Consensus 213 dG~~S~ 218 (520)
.|..-+
T Consensus 233 ~g~~p~ 238 (415)
T COG0446 233 PGERPN 238 (415)
T ss_pred eccccc
Confidence 997653
No 323
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.22 E-value=0.0016 Score=66.69 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=29.1
Q ss_pred CcEEEECCCHHHHHHHHHHhhCC--C-eEEEEccCCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDG--R-RVHVIERDVT 88 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G--~-~V~v~Er~~~ 88 (520)
++|+|||+|++|+.+|..|.+.- - .+.|+|++..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 68999999999999999998852 2 3999999864
No 324
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.22 E-value=0.00032 Score=73.06 Aligned_cols=35 Identities=40% Similarity=0.602 Sum_probs=32.8
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTE 89 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~ 89 (520)
-+|+||||||+||++|..|++.|++|+++|+.+..
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~ 158 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALD 158 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCC
Confidence 68999999999999999999999999999998743
No 325
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.21 E-value=0.0026 Score=66.78 Aligned_cols=94 Identities=16% Similarity=0.190 Sum_probs=65.6
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.. + + . +.
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l--------~-~-------~--~d---------------------- 188 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKI--------N-K-------L--MD---------------------- 188 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc--------c-h-------h--cC----------------------
Confidence 47999999999999999999999999999987410 0 0 0 00
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEec
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 213 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~Ad 213 (520)
.++.+.+.+.+++. |++++.++ +.++.. . .++ ..+|+. +.+|.||.|.
T Consensus 189 ---------------------~~~~~~l~~~l~~~-gI~i~~~~~v~~i~~--~---~v~--~~~g~~--~~~D~vl~a~ 237 (438)
T PRK13512 189 ---------------------ADMNQPILDELDKR-EIPYRLNEEIDAING--N---EVT--FKSGKV--EHYDMIIEGV 237 (438)
T ss_pred ---------------------HHHHHHHHHHHHhc-CCEEEECCeEEEEeC--C---EEE--ECCCCE--EEeCEEEECc
Confidence 11333444555555 89998876 888753 2 233 345654 5699999999
Q ss_pred CCcchh
Q 009994 214 GCFSNL 219 (520)
Q Consensus 214 G~~S~v 219 (520)
|...+.
T Consensus 238 G~~pn~ 243 (438)
T PRK13512 238 GTHPNS 243 (438)
T ss_pred CCCcCh
Confidence 987643
No 326
>PLN02546 glutathione reductase
Probab=97.20 E-value=0.0056 Score=65.93 Aligned_cols=100 Identities=17% Similarity=0.226 Sum_probs=68.6
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
-+|+|||||..|+-+|..|++.|.+|+|+|+.+.. +. ++.
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~i----------------l~--~~d---------------------- 292 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKV----------------LR--GFD---------------------- 292 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccc----------------cc--ccC----------------------
Confidence 47999999999999999999999999999987420 00 000
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEec
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 213 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~Ad 213 (520)
..+...+.+.+++. ||+++.++ ++++..+++.. +.+...+++ ...+|.||.|.
T Consensus 293 ---------------------~~~~~~l~~~L~~~-GV~i~~~~~v~~i~~~~~g~--v~v~~~~g~--~~~~D~Viva~ 346 (558)
T PLN02546 293 ---------------------EEVRDFVAEQMSLR-GIEFHTEESPQAIIKSADGS--LSLKTNKGT--VEGFSHVMFAT 346 (558)
T ss_pred ---------------------HHHHHHHHHHHHHC-CcEEEeCCEEEEEEEcCCCE--EEEEECCeE--EEecCEEEEee
Confidence 11333444555555 89999887 88887644332 334444443 23489999999
Q ss_pred CCcchhh
Q 009994 214 GCFSNLR 220 (520)
Q Consensus 214 G~~S~vR 220 (520)
|...+..
T Consensus 347 G~~Pnt~ 353 (558)
T PLN02546 347 GRKPNTK 353 (558)
T ss_pred ccccCCC
Confidence 9887653
No 327
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.20 E-value=0.00043 Score=76.13 Aligned_cols=36 Identities=33% Similarity=0.459 Sum_probs=33.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
...+|+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~ 227 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ 227 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 346899999999999999999999999999999864
No 328
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.17 E-value=0.0017 Score=65.50 Aligned_cols=138 Identities=20% Similarity=0.266 Sum_probs=73.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCC--eEEEEccCCCCCC----ceeeeeeccchHHHHHhcCchhHHhhcccceece
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGR--RVHVIERDVTEPD----RIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLG 125 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~--~V~v~Er~~~~~~----~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~ 125 (520)
.....|+|||||.++.-.+..|.+.+. +|+++=|+..... ....+.+.|.-++.+..+--....+-+....
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~--- 264 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQR--- 264 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTG---
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhH---
Confidence 456789999999999999999999875 8999999864321 1223456666655555444321111110000
Q ss_pred EEEEECCccccccCCCcCCCCCccceeecchHHHHHH-----HHHHHcCCCeEEEece-EEEEEeeCC-eEEEEEEEe-C
Q 009994 126 YALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRM-----REKAASLPNVRLEQGT-VTSLLEENG-TIKGVQYKT-K 197 (520)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-----~~~~~~~~~v~i~~~~-v~~~~~~~~-~v~gv~v~~-~ 197 (520)
...+ -.++. .+.+.| .+.+...+.+.++.++ |+++..+++ ++. ++++. .
T Consensus 265 ----------~~ny-----------~~i~~-~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~-l~~~~~~ 321 (341)
T PF13434_consen 265 ----------HTNY-----------GGIDP-DLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVR-LTLRHRQ 321 (341)
T ss_dssp ----------GGTS-----------SEB-H-HHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEE-EEEEETT
T ss_pred ----------hhcC-----------CCCCH-HHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEE-EEEEECC
Confidence 0001 11222 222222 2344444467888887 999988774 544 66655 4
Q ss_pred CCcEEEEecCeEEEecCC
Q 009994 198 DGQELRAYAPLTIVCDGC 215 (520)
Q Consensus 198 ~g~~~~~~ad~vV~AdG~ 215 (520)
.++..+..+|+||.|||.
T Consensus 322 ~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 322 TGEEETLEVDAVILATGY 339 (341)
T ss_dssp T--EEEEEESEEEE---E
T ss_pred CCCeEEEecCEEEEcCCc
Confidence 566777899999999994
No 329
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0026 Score=61.66 Aligned_cols=145 Identities=16% Similarity=0.225 Sum_probs=77.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC-CCCceee---eeeccchH--HHHHhcCc-hhHHhhcccceec
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT-EPDRIVG---ELLQPGGY--LKLVELGL-EDCVEEIDAQQVL 124 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~-~~~~~~g---~~l~~~~~--~~l~~lGl-~~~l~~~~~~~~~ 124 (520)
..+||.+|||||-+||++|-..+..|.+|.++|--.. +.....| ...+-+.+ +.+.+..+ .+.+... ...
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da---~ky 93 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDA---RKY 93 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHH---Hhh
Confidence 5679999999999999999999999999999997532 2222222 11222221 22333222 1222221 111
Q ss_pred eEEEEECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCC---CeEEEeceEEEEEe---eCCeEEEEEEEeCC
Q 009994 125 GYALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLP---NVRLEQGTVTSLLE---ENGTIKGVQYKTKD 198 (520)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~---~v~i~~~~v~~~~~---~~~~v~gv~v~~~~ 198 (520)
|+... ... + .-+-..+.+...+++.+.. .+++++.+|+-+.. --+.. .+......
T Consensus 94 GW~~~--e~~--i--------------khdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h-~I~at~~~ 154 (503)
T KOG4716|consen 94 GWNVD--EQK--I--------------KHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPH-KIKATNKK 154 (503)
T ss_pred CCCCc--ccc--c--------------cccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccc-eEEEecCC
Confidence 11110 000 0 0011246666666666541 14444444443321 11111 24455666
Q ss_pred CcEEEEecCeEEEecCCcch
Q 009994 199 GQELRAYAPLTIVCDGCFSN 218 (520)
Q Consensus 199 g~~~~~~ad~vV~AdG~~S~ 218 (520)
|++..+.|+.+|.|+|.+-+
T Consensus 155 gk~~~~ta~~fvIatG~RPr 174 (503)
T KOG4716|consen 155 GKERFLTAENFVIATGLRPR 174 (503)
T ss_pred CceEEeecceEEEEecCCCC
Confidence 76667889999999997653
No 330
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.16 E-value=0.00054 Score=72.70 Aligned_cols=35 Identities=40% Similarity=0.587 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
..+|+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~ 177 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDR 177 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 46999999999999999999999999999999863
No 331
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.16 E-value=0.00051 Score=72.53 Aligned_cols=36 Identities=36% Similarity=0.537 Sum_probs=33.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
...+|+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~ 175 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPE 175 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 456899999999999999999999999999999864
No 332
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.08 E-value=0.0033 Score=63.87 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=29.6
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCe-EEEEccC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRR-VHVIERD 86 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~-V~v~Er~ 86 (520)
-.|+|||+|..|+-+|..|.+.|.+ |+|+++.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 4799999999999999999999997 9999976
No 333
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.08 E-value=0.0054 Score=64.50 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
-+|+|||||..|+-+|..|++.|.+|+++++..
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 479999999999999999999999999999874
No 334
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.07 E-value=0.00054 Score=73.50 Aligned_cols=58 Identities=26% Similarity=0.342 Sum_probs=45.3
Q ss_pred HHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCC--cEEEEecCeEEEecCCcch
Q 009994 161 RMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDG--QELRAYAPLTIVCDGCFSN 218 (520)
Q Consensus 161 ~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g--~~~~~~ad~vV~AdG~~S~ 218 (520)
.+...+.+.+|.++..+. |..+..++++.++|++...++ .+..+.++.||.|.|+.-.
T Consensus 207 a~l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~S 267 (542)
T COG2303 207 AYLKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINS 267 (542)
T ss_pred hcchhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCC
Confidence 344446667899999987 999999999999999987654 3455678899999987653
No 335
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.05 E-value=0.00065 Score=74.65 Aligned_cols=36 Identities=33% Similarity=0.550 Sum_probs=33.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
...+|+||||||+||++|..|++.|++|+|+|+.+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~ 344 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPE 344 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 357899999999999999999999999999999864
No 336
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.99 E-value=0.0042 Score=67.31 Aligned_cols=62 Identities=11% Similarity=0.219 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEe-CCCcEEEEecCeEEEecCCcchh
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEE-NGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNL 219 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~gv~v~~-~~g~~~~~~ad~vV~AdG~~S~v 219 (520)
.+...|.+.+.+. +++++.++ ++++..+ ++++.||.+.+ .+|+...++|+.||.|+|+++.+
T Consensus 127 ~i~~~L~~~~~~~-gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 127 ALLHTLYQGNLKN-GTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHhcc-CCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 5788888888775 89999987 9999874 68999998854 67887889999999999999864
No 337
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=96.93 E-value=0.0011 Score=67.29 Aligned_cols=42 Identities=33% Similarity=0.483 Sum_probs=34.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCC-CeEEEEccCCCCCCcee
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDG-RRVHVIERDVTEPDRIV 94 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G-~~V~v~Er~~~~~~~~~ 94 (520)
....|+|||||.|||++|..|-+.| .+|+|+|....-..|+.
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ 62 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIH 62 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEe
Confidence 3458999999999999999999766 58999999876554443
No 338
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.89 E-value=0.0066 Score=63.38 Aligned_cols=91 Identities=23% Similarity=0.337 Sum_probs=62.3
Q ss_pred cEEEECCCHHHHHHHHHHhh--------------CCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccc
Q 009994 56 DVIIVGAGVAGAALAHTLGK--------------DGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQ 121 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~--------------~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~ 121 (520)
.|+|||||++|+-+|..|+. .|.+|+|+|+.+.. |.. +.
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l----------------l~~--~~--------- 227 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV----------------LGS--FD--------- 227 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc----------------ccc--CC---------
Confidence 79999999999999999985 47889999987411 000 00
Q ss_pred eeceEEEEECCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCc
Q 009994 122 QVLGYALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQ 200 (520)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~ 200 (520)
..+.+.+.+.+++. ||+++.++ |+++.. +. |. .++|+
T Consensus 228 ----------------------------------~~~~~~~~~~L~~~-gV~v~~~~~v~~v~~--~~---v~--~~~g~ 265 (424)
T PTZ00318 228 ----------------------------------QALRKYGQRRLRRL-GVDIRTKTAVKEVLD--KE---VV--LKDGE 265 (424)
T ss_pred ----------------------------------HHHHHHHHHHHHHC-CCEEEeCCeEEEEeC--CE---EE--ECCCC
Confidence 11334444555555 89999876 887753 22 33 45676
Q ss_pred EEEEecCeEEEecCCcc
Q 009994 201 ELRAYAPLTIVCDGCFS 217 (520)
Q Consensus 201 ~~~~~ad~vV~AdG~~S 217 (520)
+ +.+|++|.|.|...
T Consensus 266 ~--i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 266 V--IPTGLVVWSTGVGP 280 (424)
T ss_pred E--EEccEEEEccCCCC
Confidence 4 56999999999654
No 339
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.89 E-value=0.0045 Score=60.38 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=33.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccC
Q 009994 51 NGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (520)
Q Consensus 51 ~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~ 86 (520)
...+||.+|||||-.|+++|...+.+|.+|.|+|-.
T Consensus 17 ~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~ 52 (478)
T KOG0405|consen 17 DVKDFDYLVIGGGSGGVASARRAASHGAKVALCELP 52 (478)
T ss_pred cccccceEEEcCCcchhHHhHHHHhcCceEEEEecC
Confidence 355899999999999999999999999999999976
No 340
>PRK12831 putative oxidoreductase; Provisional
Probab=96.87 E-value=0.0098 Score=62.79 Aligned_cols=33 Identities=30% Similarity=0.414 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
-+|+|||||.+|+-+|..|.+.|.+|+|++|..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 489999999999999999999999999999863
No 341
>PLN03000 amine oxidase
Probab=96.87 E-value=0.0014 Score=72.73 Aligned_cols=37 Identities=41% Similarity=0.538 Sum_probs=33.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTE 89 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~ 89 (520)
...+|+|||||++||++|..|++.|++|+|+|++...
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~ri 219 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRP 219 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcC
Confidence 4579999999999999999999999999999998654
No 342
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.83 E-value=0.0046 Score=63.00 Aligned_cols=57 Identities=28% Similarity=0.334 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCc-chhhhhh
Q 009994 158 FIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCF-SNLRRSL 223 (520)
Q Consensus 158 l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~-S~vR~~l 223 (520)
+.+...+.++++ ||+++.++ |++++.+. |++ ++|++ ++.++.+|=|.|.. |++-+.+
T Consensus 211 l~~~a~~~L~~~-GV~v~l~~~Vt~v~~~~-----v~~--~~g~~-~I~~~tvvWaaGv~a~~~~~~l 269 (405)
T COG1252 211 LSKYAERALEKL-GVEVLLGTPVTEVTPDG-----VTL--KDGEE-EIPADTVVWAAGVRASPLLKDL 269 (405)
T ss_pred HHHHHHHHHHHC-CCEEEcCCceEEECCCc-----EEE--ccCCe-eEecCEEEEcCCCcCChhhhhc
Confidence 444455556666 89999998 88876542 444 34543 57799999999976 4555553
No 343
>PLN02976 amine oxidase
Probab=96.81 E-value=0.0017 Score=74.83 Aligned_cols=38 Identities=34% Similarity=0.458 Sum_probs=34.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTE 89 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~ 89 (520)
....+|+|||||++|+++|+.|++.|++|+|+|++...
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~v 728 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRI 728 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCC
Confidence 44689999999999999999999999999999997543
No 344
>PRK13984 putative oxidoreductase; Provisional
Probab=96.71 E-value=0.0019 Score=70.67 Aligned_cols=37 Identities=35% Similarity=0.344 Sum_probs=33.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
....+|+|||+|++|+++|..|++.|++|+|+|+...
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~ 317 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSK 317 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3456899999999999999999999999999999864
No 345
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.71 E-value=0.014 Score=63.90 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
-+|+|||||..|+-+|..|++.|.+|+|+|+.+
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~ 345 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSP 345 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence 379999999999999999999999999999975
No 346
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.65 E-value=0.016 Score=62.64 Aligned_cols=33 Identities=36% Similarity=0.498 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
-+|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 579999999999999999999999999999874
No 347
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.59 E-value=0.019 Score=58.58 Aligned_cols=101 Identities=28% Similarity=0.299 Sum_probs=72.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCc
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGK 133 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 133 (520)
.-.|++||+|..|+-.|..|...+.+|+++++.+..-.+ . ++
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~------------l---f~----------------------- 254 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPR------------L---FG----------------------- 254 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhh------------h---hh-----------------------
Confidence 456999999999999999999999999999998521110 0 00
Q ss_pred cccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeC-CeEEEEEEEeCCCcEEEEecCeEEE
Q 009994 134 STRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEEN-GTIKGVQYKTKDGQELRAYAPLTIV 211 (520)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~-~~v~gv~v~~~~g~~~~~~ad~vV~ 211 (520)
..+.+.+.+..++. ++++..++ +.++..++ +++ ..+...+|.+ +.||+||.
T Consensus 255 ----------------------~~i~~~~~~y~e~k-gVk~~~~t~~s~l~~~~~Gev--~~V~l~dg~~--l~adlvv~ 307 (478)
T KOG1336|consen 255 ----------------------PSIGQFYEDYYENK-GVKFYLGTVVSSLEGNSDGEV--SEVKLKDGKT--LEADLVVV 307 (478)
T ss_pred ----------------------HHHHHHHHHHHHhc-CeEEEEecceeecccCCCCcE--EEEEeccCCE--eccCeEEE
Confidence 11333444444554 89999998 77887665 444 4555677875 56999999
Q ss_pred ecCCcchh
Q 009994 212 CDGCFSNL 219 (520)
Q Consensus 212 AdG~~S~v 219 (520)
+.|+.+..
T Consensus 308 GiG~~p~t 315 (478)
T KOG1336|consen 308 GIGIKPNT 315 (478)
T ss_pred eecccccc
Confidence 99987653
No 348
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.50 E-value=0.0029 Score=63.76 Aligned_cols=62 Identities=21% Similarity=0.287 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcchhhhhh
Q 009994 157 RFIQRMREKAASLPNVRLEQG-TVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLRRSL 223 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S~vR~~l 223 (520)
.+-..+.+.+++. |.++... +|.++.-+++.+.||.+ .||++ ++++.||-=.+.+-..-+.+
T Consensus 265 avs~aia~~~~~~-GaeI~tka~Vq~Illd~gka~GV~L--~dG~e--v~sk~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 265 AVSFAIAEGAKRA-GAEIFTKATVQSILLDSGKAVGVRL--ADGTE--VRSKIVVSNATPWDTFEKLL 327 (561)
T ss_pred HHHHHHHHHHHhc-cceeeehhhhhheeccCCeEEEEEe--cCCcE--EEeeeeecCCchHHHHHHhC
Confidence 4566778888888 4555554 59999988898888775 56875 55888887777776665544
No 349
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.40 E-value=0.033 Score=64.41 Aligned_cols=94 Identities=18% Similarity=0.193 Sum_probs=66.8
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCC-eEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGK 133 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 133 (520)
-+|+|||+|+.|+-+|..|++.|. .|+|+|+.+.. ..
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~----------------~~-------------------------- 355 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV----------------SP-------------------------- 355 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch----------------hH--------------------------
Confidence 479999999999999999999995 58899876310 00
Q ss_pred cccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEe
Q 009994 134 STRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVC 212 (520)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~A 212 (520)
.+.+.+++. +|+++.++ ++++.. ++++.+|++...+|+..++.||.|+.+
T Consensus 356 ---------------------------~l~~~L~~~-GV~i~~~~~v~~i~g-~~~v~~V~l~~~~g~~~~i~~D~V~va 406 (985)
T TIGR01372 356 ---------------------------EARAEAREL-GIEVLTGHVVAATEG-GKRVSGVAVARNGGAGQRLEADALAVS 406 (985)
T ss_pred ---------------------------HHHHHHHHc-CCEEEcCCeEEEEec-CCcEEEEEEEecCCceEEEECCEEEEc
Confidence 012233444 79998887 667654 345666777644455556889999999
Q ss_pred cCCcchh
Q 009994 213 DGCFSNL 219 (520)
Q Consensus 213 dG~~S~v 219 (520)
.|...+.
T Consensus 407 ~G~~Pnt 413 (985)
T TIGR01372 407 GGWTPVV 413 (985)
T ss_pred CCcCchh
Confidence 9977653
No 350
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.29 E-value=0.0098 Score=59.51 Aligned_cols=149 Identities=18% Similarity=0.174 Sum_probs=87.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCC-CeEEEEccCCCCCCceeeeeeccchH--HHHHhcCchhHHhhcccceeceEEE
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDG-RRVHVIERDVTEPDRIVGELLQPGGY--LKLVELGLEDCVEEIDAQQVLGYAL 128 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G-~~V~v~Er~~~~~~~~~g~~l~~~~~--~~l~~lGl~~~l~~~~~~~~~~~~~ 128 (520)
+..+|++.||-||.-|++|+.|..++ .+++.+||.+....++. ..+....+ ..++.| +.- ..+...+++
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpG-mllegstlQv~FlkDL-----VTl--~~PTs~ySF 74 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPG-MLLEGSTLQVPFLKDL-----VTL--VDPTSPYSF 74 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCC-cccCCccccccchhhh-----ccc--cCCCCchHH
Confidence 56799999999999999999999976 78999999986654432 12222211 112111 100 011122221
Q ss_pred EE----CCccccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeC-CeEEEEEEEeCCCcEE
Q 009994 129 FK----DGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEEN-GTIKGVQYKTKDGQEL 202 (520)
Q Consensus 129 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~-~~v~gv~v~~~~g~~~ 202 (520)
.+ .++. ..+- ......+.|.++.+.+.-.+...+ .+++++ |+++..-+ +......+.+.+++.
T Consensus 75 LNYL~~h~RL--y~Fl------~~e~f~i~R~Ey~dY~~Waa~~l~--~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~- 143 (436)
T COG3486 75 LNYLHEHGRL--YEFL------NYETFHIPRREYNDYCQWAASQLP--SLRFGEEVTDISSLDGDAVVRLFVVTANGTV- 143 (436)
T ss_pred HHHHHHcchH--hhhh------hhhcccccHHHHHHHHHHHHhhCC--ccccCCeeccccccCCcceeEEEEEcCCCcE-
Confidence 11 1111 0110 011234678889999998888774 567787 88764332 322222345556653
Q ss_pred EEecCeEEEecCCcchhh
Q 009994 203 RAYAPLTIVCDGCFSNLR 220 (520)
Q Consensus 203 ~~~ad~vV~AdG~~S~vR 220 (520)
++|+-+|...|..-.+-
T Consensus 144 -y~ar~lVlg~G~~P~IP 160 (436)
T COG3486 144 -YRARNLVLGVGTQPYIP 160 (436)
T ss_pred -EEeeeEEEccCCCcCCC
Confidence 56999999999765443
No 351
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.25 E-value=0.044 Score=61.63 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCe-EEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRR-VHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~-V~v~Er~~ 87 (520)
-+|+|||||.+|+-+|..+.+.|.+ |+|++++.
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4799999999999999999999997 99999874
No 352
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.24 E-value=0.0059 Score=60.30 Aligned_cols=37 Identities=32% Similarity=0.319 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHhh--CCCeEEEEccCCCCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGK--DGRRVHVIERDVTEP 90 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~--~G~~V~v~Er~~~~~ 90 (520)
...|.|||+||||..+|..|-+ .+.+|.|+|+.+.+-
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF 58 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF 58 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence 3489999999999999999887 368999999997553
No 353
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.22 E-value=0.01 Score=62.94 Aligned_cols=39 Identities=33% Similarity=0.449 Sum_probs=34.7
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHhhC-CCeEEEEccCCCC
Q 009994 51 NGSPTDVIIVGAGVAGAALAHTLGKD-GRRVHVIERDVTE 89 (520)
Q Consensus 51 ~~~~~dV~IVGaG~aGl~~A~~La~~-G~~V~v~Er~~~~ 89 (520)
...+||.||||||-||+.+|..|++. ..+|+|+|+...+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 35689999999999999999999986 5899999998654
No 354
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.15 E-value=0.06 Score=55.76 Aligned_cols=34 Identities=35% Similarity=0.512 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHhhC----CCeEEEEccCCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKD----GRRVHVIERDVT 88 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~----G~~V~v~Er~~~ 88 (520)
.++=|||+|+|+|++|.+|-|. |-+|+|+|+...
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~ 40 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDV 40 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCC
Confidence 4678999999999999999985 569999999864
No 355
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.09 E-value=0.006 Score=67.55 Aligned_cols=34 Identities=44% Similarity=0.571 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
-..|.|||.||+||++|-.|-+.|+.|+|+||..
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~d 1818 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSD 1818 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecC
Confidence 4689999999999999999999999999999986
No 356
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.94 E-value=0.014 Score=55.27 Aligned_cols=58 Identities=29% Similarity=0.473 Sum_probs=44.1
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCc-----e--eeeeeccchHHHHHhcCchh
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDR-----I--VGELLQPGGYLKLVELGLED 113 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~-----~--~g~~l~~~~~~~l~~lGl~~ 113 (520)
+++|||+|..|.+.|-.|.+.|.+|+++|++.+.-.. . ........-...|+++|+.+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~ 66 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDD 66 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCc
Confidence 6999999999999999999999999999998643111 1 22233444557888888763
No 357
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.90 E-value=0.067 Score=59.16 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=29.4
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCC-eEEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~ 87 (520)
-+|+|||||..|+-+|..+.+.|. +|++++++.
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 479999999999999999999997 699998864
No 358
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=95.87 E-value=0.06 Score=54.89 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcc
Q 009994 159 IQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFS 217 (520)
Q Consensus 159 ~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S 217 (520)
...+.+.+++. +++++.++ +.++.. + .+. ..+|++ +.+|.+|.|.|...
T Consensus 194 ~~~~~~~l~~~-gV~v~~~~~v~~i~~--~---~v~--~~~g~~--i~~D~vi~a~G~~p 243 (364)
T TIGR03169 194 RRLVLRLLARR-GIEVHEGAPVTRGPD--G---ALI--LADGRT--LPADAILWATGARA 243 (364)
T ss_pred HHHHHHHHHHC-CCEEEeCCeeEEEcC--C---eEE--eCCCCE--EecCEEEEccCCCh
Confidence 33444555555 89999886 776642 2 233 356664 56999999999664
No 359
>PLN02852 ferredoxin-NADP+ reductase
Probab=95.84 E-value=0.14 Score=54.07 Aligned_cols=60 Identities=20% Similarity=0.206 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcC--------CCeEEEece-EEEEEe--e-CCeEEEEEEEe---------------CCCcEEEEecCeEE
Q 009994 158 FIQRMREKAASL--------PNVRLEQGT-VTSLLE--E-NGTIKGVQYKT---------------KDGQELRAYAPLTI 210 (520)
Q Consensus 158 l~~~L~~~~~~~--------~~v~i~~~~-v~~~~~--~-~~~v~gv~v~~---------------~~g~~~~~~ad~vV 210 (520)
..+.|.+.+.+. .++.+++.. -+++.. + ++++.++++.. .+|+..++.+|+||
T Consensus 268 ~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi 347 (491)
T PLN02852 268 VYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVL 347 (491)
T ss_pred HHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEE
Confidence 566666654332 258888876 777763 2 25788887751 13556678889998
Q ss_pred EecCCcc
Q 009994 211 VCDGCFS 217 (520)
Q Consensus 211 ~AdG~~S 217 (520)
.|=|..|
T Consensus 348 ~aIG~~~ 354 (491)
T PLN02852 348 KSIGYKS 354 (491)
T ss_pred EeecCCC
Confidence 8888654
No 360
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=95.77 E-value=0.1 Score=59.75 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
-+|+|||||.+|+-+|..+.+.|.+|+++.|+.
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 479999999999999999999999999998863
No 361
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.71 E-value=0.013 Score=52.11 Aligned_cols=32 Identities=38% Similarity=0.597 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
+|.|+|||..|.++|..|+++|.+|.|+.|+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999999984
No 362
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.67 E-value=0.11 Score=54.83 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCC-eEEEEccCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~ 87 (520)
.-.|+|||+|..|+-+|..+.+.|. +|+|++|..
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 3579999999999999999999996 799999874
No 363
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.53 E-value=0.018 Score=52.43 Aligned_cols=32 Identities=28% Similarity=0.565 Sum_probs=28.3
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
.|.|||||..|...|..+++.|++|+++|+++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 48999999999999999999999999999974
No 364
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.31 E-value=0.14 Score=56.52 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCC-eEEEEccCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~ 87 (520)
.-.|+|||||..|+-+|..|.+.|. +|+|+++..
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3579999999999999999999997 699999874
No 365
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=95.23 E-value=0.077 Score=57.55 Aligned_cols=62 Identities=16% Similarity=0.276 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCeEEEecCCcchh
Q 009994 157 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNL 219 (520)
Q Consensus 157 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~-~~g~~~~~~ad~vV~AdG~~S~v 219 (520)
.+...|.+.+.+. ++++..++ ++++..+++++.||.+.+ .+|+...++|+.||.|+|+++.+
T Consensus 120 ~i~~~L~~~~~~~-gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~~ 183 (565)
T TIGR01816 120 AILHTLYQQNLKA-DTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYGRI 183 (565)
T ss_pred HHHHHHHHHHHhC-CCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCcccc
Confidence 4788888888776 79999887 999998888999998854 57887789999999999999864
No 366
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=95.18 E-value=0.021 Score=55.16 Aligned_cols=37 Identities=24% Similarity=0.441 Sum_probs=31.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHhhC-CC-eEEEEccCC
Q 009994 51 NGSPTDVIIVGAGVAGAALAHTLGKD-GR-RVHVIERDV 87 (520)
Q Consensus 51 ~~~~~dV~IVGaG~aGl~~A~~La~~-G~-~V~v~Er~~ 87 (520)
+..++.|+|||||-+|++.|.-+.+. |. +|.|+|...
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 35689999999999999999998874 43 789999764
No 367
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=95.11 E-value=0.079 Score=53.48 Aligned_cols=50 Identities=26% Similarity=0.317 Sum_probs=35.0
Q ss_pred CCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcc-hhhhhhc
Q 009994 170 PNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFS-NLRRSLC 224 (520)
Q Consensus 170 ~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S-~vR~~l~ 224 (520)
.++++..++ |..+..+. +.++..+|+..++..-++|.++|... ++-+.|.
T Consensus 286 ~~I~~~~~t~Vk~V~~~~-----I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~lm 337 (491)
T KOG2495|consen 286 DGIDLDTGTMVKKVTEKT-----IHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLM 337 (491)
T ss_pred ccceeecccEEEeecCcE-----EEEEcCCCceeeecceEEEecCCCCCchhhhhHh
Confidence 389999997 66654322 45556688888889999999999653 4444443
No 368
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.02 E-value=0.025 Score=51.75 Aligned_cols=33 Identities=27% Similarity=0.509 Sum_probs=26.9
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
+.|.|||.|-.||.+|..||+.|++|+-+|.++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 369999999999999999999999999999985
No 369
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.27 Score=48.64 Aligned_cols=94 Identities=20% Similarity=0.289 Sum_probs=68.3
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKS 134 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 134 (520)
.+|+|||||-+..--|+.|++.+-+|+|+=|+....
T Consensus 144 k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~r-------------------------------------------- 179 (305)
T COG0492 144 KDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFR-------------------------------------------- 179 (305)
T ss_pred CeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccC--------------------------------------------
Confidence 499999999999999999999999999999884210
Q ss_pred ccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEec
Q 009994 135 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 213 (520)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~Ad 213 (520)
-...+.+.+.+.+++.+.+++ +.++..++ +.+|++++..|++..+..|-+..+-
T Consensus 180 -----------------------a~~~~~~~l~~~~~i~~~~~~~i~ei~G~~--v~~v~l~~~~~~~~~~~~~gvf~~i 234 (305)
T COG0492 180 -----------------------AEEILVERLKKNVKIEVLTNTVVKEILGDD--VEGVVLKNVKGEEKELPVDGVFIAI 234 (305)
T ss_pred -----------------------cCHHHHHHHHhcCCeEEEeCCceeEEecCc--cceEEEEecCCceEEEEeceEEEec
Confidence 022334445555578998887 77777655 6678887654665566677777776
Q ss_pred CCcc
Q 009994 214 GCFS 217 (520)
Q Consensus 214 G~~S 217 (520)
|...
T Consensus 235 G~~p 238 (305)
T COG0492 235 GHLP 238 (305)
T ss_pred CCCC
Confidence 6543
No 370
>PRK13984 putative oxidoreductase; Provisional
Probab=94.87 E-value=0.3 Score=53.56 Aligned_cols=30 Identities=17% Similarity=0.454 Sum_probs=25.0
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCC------eEEEEc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGR------RVHVIE 84 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~------~V~v~E 84 (520)
-+|+|||||..|+-+|..|++.|. +|+++.
T Consensus 419 k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 419 RSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 479999999999999999998753 566653
No 371
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.25 Score=48.60 Aligned_cols=82 Identities=24% Similarity=0.404 Sum_probs=63.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCc
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGK 133 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 133 (520)
..||+|||||-+|.-+|+.|+--=..|+|+|-.++ |
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e-----------------L--------------------------- 389 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE-----------------L--------------------------- 389 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhhhheeeeeecchh-----------------h---------------------------
Confidence 45899999999999999999866567999986631 0
Q ss_pred cccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeC-CCcEE
Q 009994 134 STRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTK-DGQEL 202 (520)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~-~g~~~ 202 (520)
+-++.|.+++.+.+|+++..+. -+++.-++++|+|..+++. +|+..
T Consensus 390 -----------------------kAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~ 437 (520)
T COG3634 390 -----------------------KADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEH 437 (520)
T ss_pred -----------------------hhHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCcee
Confidence 1355677788888999999887 7777778789999998773 45543
No 372
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=94.73 E-value=0.084 Score=56.90 Aligned_cols=97 Identities=20% Similarity=0.287 Sum_probs=65.6
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCccc
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKST 135 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~~ 135 (520)
.-+|||||.-||-+|..|...|.+|.|++=.+ ..+ ..++++
T Consensus 147 ~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~-------------~lM--------erQLD~------------------ 187 (793)
T COG1251 147 KAVVIGGGLLGLEAARGLKDLGMEVTVVHIAP-------------TLM--------ERQLDR------------------ 187 (793)
T ss_pred CcEEEccchhhhHHHHHHHhCCCceEEEeecc-------------hHH--------HHhhhh------------------
Confidence 36899999999999999999999999998653 111 111111
Q ss_pred cccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecC
Q 009994 136 RLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDG 214 (520)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG 214 (520)
.-...|++.++++ |++++.++ .+.+.. .+.+. .++++||+. +.||+||-|+|
T Consensus 188 ---------------------~ag~lL~~~le~~-Gi~~~l~~~t~ei~g-~~~~~--~vr~~DG~~--i~ad~VV~a~G 240 (793)
T COG1251 188 ---------------------TAGRLLRRKLEDL-GIKVLLEKNTEEIVG-EDKVE--GVRFADGTE--IPADLVVMAVG 240 (793)
T ss_pred ---------------------HHHHHHHHHHHhh-cceeecccchhhhhc-Cccee--eEeecCCCc--ccceeEEEecc
Confidence 0133455555555 78888776 445444 44443 455678875 45999999999
Q ss_pred Ccch
Q 009994 215 CFSN 218 (520)
Q Consensus 215 ~~S~ 218 (520)
.+-+
T Consensus 241 IrPn 244 (793)
T COG1251 241 IRPN 244 (793)
T ss_pred cccc
Confidence 7643
No 373
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.72 E-value=0.036 Score=58.56 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
.|+|||.|++|+++|..|++.|++|++.|+...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 589999999999999999999999999998854
No 374
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=94.71 E-value=0.033 Score=57.65 Aligned_cols=37 Identities=35% Similarity=0.592 Sum_probs=29.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
..+|||+|+|-|..-+.+|.+|++.|.+|+.+||++.
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~y 38 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDY 38 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCC
Confidence 4579999999999999999999999999999999864
No 375
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.69 E-value=0.047 Score=47.95 Aligned_cols=31 Identities=32% Similarity=0.646 Sum_probs=29.4
Q ss_pred EEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 57 VIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 57 V~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
|+|+|+|..|+..|..|++.|.+|.++-|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999999973
No 376
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.60 E-value=0.04 Score=58.57 Aligned_cols=33 Identities=36% Similarity=0.508 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
-+|+|||+|++|+++|..|+++|.+|+++|+.+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 379999999999999999999999999999764
No 377
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=94.59 E-value=0.22 Score=51.76 Aligned_cols=56 Identities=21% Similarity=0.303 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCc
Q 009994 158 FIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCF 216 (520)
Q Consensus 158 l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~ 216 (520)
+.+.|.+.+++. |++++.++ |++++.+++++..+. ..+|+...++||.||.|+|.+
T Consensus 261 L~~aL~~~l~~~-Gv~I~~g~~V~~v~~~~~~V~~v~--~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 261 LQNALRRAFERL-GGRIMPGDEVLGAEFEGGRVTAVW--TRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHhC-CCEEEeCCEEEEEEEeCCEEEEEE--eeCCceEEEECCEEEEeCCCc
Confidence 566677777666 78888886 999987777655433 345665678899999999975
No 378
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=94.54 E-value=0.33 Score=56.24 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=28.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCe-EEEEccC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRR-VHVIERD 86 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~-V~v~Er~ 86 (520)
.-+|+|||||.+|+=+|..+.+.|.+ |+++.|+
T Consensus 571 Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr 604 (1006)
T PRK12775 571 GKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR 604 (1006)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence 35899999999999999999999984 7777765
No 379
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=94.49 E-value=0.45 Score=48.48 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCcc
Q 009994 156 GRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFS 217 (520)
Q Consensus 156 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~S 217 (520)
..+.++|...+++. ||+++.++ |.++ + +++ ..+...++. .+++||.||.|+|..|
T Consensus 86 ~sVv~~L~~~l~~~-gV~i~~~~~V~~i-~-~~~---~~v~~~~~~-~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 86 APLLRAWLKRLAEQ-GVQFHTRHRWIGW-Q-GGT---LRFETPDGQ-STIEADAVVLALGGAS 141 (376)
T ss_pred HHHHHHHHHHHHHC-CCEEEeCCEEEEE-e-CCc---EEEEECCCc-eEEecCEEEEcCCCcc
Confidence 46889999999887 89999997 8888 2 332 233333332 2467999999999876
No 380
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.36 E-value=0.062 Score=53.62 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
..+|+|||+|-.|...|..|++.|.+|+++.|+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 4679999999999999999999999999999863
No 381
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=94.24 E-value=0.65 Score=49.40 Aligned_cols=33 Identities=30% Similarity=0.413 Sum_probs=28.2
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCC-eEEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~ 87 (520)
-.|+|||||..|+-+|..+.+.|. +|+++|+.+
T Consensus 284 k~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~ 317 (485)
T TIGR01317 284 KKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP 317 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 479999999999999887777775 799998764
No 382
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.22 E-value=0.05 Score=54.16 Aligned_cols=32 Identities=34% Similarity=0.586 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
+|.|||+|..|.+.|..|+++|++|+++|+++
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 69999999999999999999999999999985
No 383
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=93.89 E-value=0.66 Score=53.20 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=29.7
Q ss_pred CCcEEEECCCHHHHHHHHHHhhC-CC-eEEEEccCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKD-GR-RVHVIERDV 87 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~-G~-~V~v~Er~~ 87 (520)
.-+|+|||||.+|+-+|..+.+. |. +|++++|+.
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 45799999999999999998886 86 799999874
No 384
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=93.86 E-value=0.28 Score=50.36 Aligned_cols=33 Identities=33% Similarity=0.597 Sum_probs=27.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCC--eEEEEccC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGR--RVHVIERD 86 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~--~V~v~Er~ 86 (520)
...++|||+|++|..++..+.+.|. +.+++-+.
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~ 108 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKRE 108 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEecc
Confidence 4579999999999999999999885 56666544
No 385
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.81 E-value=0.08 Score=52.59 Aligned_cols=33 Identities=36% Similarity=0.459 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
++|+|+|+|..|...|..|++.|.+|+++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 579999999999999999999999999999963
No 386
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.75 E-value=0.52 Score=51.96 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=29.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCC-eEEEEccCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~ 87 (520)
.-+|+|||+|..|+-.|..+.+.|. +|++++|+.
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~ 485 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD 485 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3579999999999999998888885 799998863
No 387
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.59 E-value=0.095 Score=51.53 Aligned_cols=32 Identities=38% Similarity=0.487 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
.|.|||+|..|...|..+++.|++|+++|+++
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999985
No 388
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.59 E-value=0.09 Score=51.77 Aligned_cols=33 Identities=27% Similarity=0.420 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
..|.|||+|..|.+.|..|+++|++|+++|++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 369999999999999999999999999999874
No 389
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.58 E-value=0.11 Score=48.08 Aligned_cols=34 Identities=26% Similarity=0.463 Sum_probs=31.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCC-eEEEEccC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERD 86 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~ 86 (520)
....|+|||+|-.|...|..|++.|+ +++|+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 34689999999999999999999999 69999998
No 390
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.32 E-value=0.097 Score=52.15 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
-.|.|||+|..|...|..++.+|++|+++|+.+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 369999999999999999999999999999985
No 391
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=93.30 E-value=0.096 Score=51.86 Aligned_cols=32 Identities=28% Similarity=0.557 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
+|+|||+|-.|...|..|++.|.+|++++|+.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 59999999999999999999999999999863
No 392
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.21 E-value=0.1 Score=51.69 Aligned_cols=30 Identities=33% Similarity=0.592 Sum_probs=29.0
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEcc
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIER 85 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er 85 (520)
+|+|+|+|..|.+.|..|++.|.+|+++.|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 599999999999999999999999999998
No 393
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=93.20 E-value=0.14 Score=46.08 Aligned_cols=36 Identities=28% Similarity=0.364 Sum_probs=30.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
.....|+|+|+|.+|..+|..|...|.+|+++|...
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 345789999999999999999999999999999874
No 394
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.13 E-value=0.14 Score=53.99 Aligned_cols=34 Identities=41% Similarity=0.582 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
.-.|+|+|+|.+|+++|..|++.|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3579999999999999999999999999999974
No 395
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.10 E-value=0.11 Score=51.06 Aligned_cols=32 Identities=25% Similarity=0.520 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
.|.|||+|..|...|..|+++|++|+++|+++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 59999999999999999999999999999985
No 396
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.06 E-value=0.1 Score=42.66 Aligned_cols=33 Identities=33% Similarity=0.471 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~ 86 (520)
...|+|||||..|..-+..|.+.|.+|+|+.+.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 458999999999999999999999999999987
No 397
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=92.99 E-value=2.9 Score=43.18 Aligned_cols=52 Identities=19% Similarity=0.130 Sum_probs=35.1
Q ss_pred HHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCc
Q 009994 160 QRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCF 216 (520)
Q Consensus 160 ~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~ 216 (520)
+.|.+.+++. +.+++.++ |+++..+++++. +.+. .+|+ ++.||.||.|.-..
T Consensus 201 ~~l~~~l~~~-g~~i~~~~~V~~i~~~~~~~~-~~~~-~~g~--~~~~d~vi~a~p~~ 253 (419)
T TIGR03467 201 EPARRWLDSR-GGEVRLGTRVRSIEANAGGIR-ALVL-SGGE--TLPADAVVLAVPPR 253 (419)
T ss_pred HHHHHHHHHc-CCEEEcCCeeeEEEEcCCcce-EEEe-cCCc--cccCCEEEEcCCHH
Confidence 3366666666 67888887 999988877643 3332 3454 35699999987654
No 398
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.99 E-value=0.16 Score=47.29 Aligned_cols=33 Identities=30% Similarity=0.467 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
-.|+|||||.+|..-+..|.+.|.+|+|+....
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 479999999999999999999999999998763
No 399
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=92.94 E-value=0.18 Score=43.48 Aligned_cols=35 Identities=29% Similarity=0.508 Sum_probs=31.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCe-EEEEccCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRR-VHVIERDV 87 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~-V~v~Er~~ 87 (520)
+...|+|||+|-+|-+++..|+..|.+ |+|+-|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 346899999999999999999999987 99999873
No 400
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.92 E-value=0.13 Score=50.75 Aligned_cols=32 Identities=25% Similarity=0.530 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
.|.|||+|..|...|..|+++|++|+++|+++
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 59999999999999999999999999999975
No 401
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.92 E-value=0.16 Score=50.18 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
..|.|||+|..|...|..|+++|++|+++|+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 469999999999999999999999999999874
No 402
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=92.73 E-value=1.2 Score=50.93 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=29.0
Q ss_pred CcEEEECCCHHHHHHHHHHhhC-C-CeEEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKD-G-RRVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~-G-~~V~v~Er~~ 87 (520)
-+|+|||||.+|+-+|..+.+. | .+|+|+.|+.
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 4799999999999999998887 5 3899999874
No 403
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.65 E-value=0.21 Score=44.35 Aligned_cols=32 Identities=28% Similarity=0.344 Sum_probs=29.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEcc
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIER 85 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er 85 (520)
.-.|+|||||.+|..-|..|.+.|.+|+|+..
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 35799999999999999999999999999954
No 404
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=92.58 E-value=0.26 Score=53.49 Aligned_cols=35 Identities=31% Similarity=0.395 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
+-+|+|+|+|..|-.+|..|.++|++|+++|++++
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence 56899999999999999999999999999999853
No 405
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.55 E-value=0.14 Score=51.41 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
++|.|||.|-+||+.|..|++.|++|+.+|.+..
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 4689999999999999999999999999999853
No 406
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=92.54 E-value=0.19 Score=48.56 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCC-eEEEEccCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~ 87 (520)
.+..|+|||+|.+|..+|..|++.|+ +++|+|.+.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 34689999999999999999999996 899999874
No 407
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.50 E-value=0.17 Score=50.39 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHhhCCC--eEEEEccCC
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGR--RVHVIERDV 87 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~--~V~v~Er~~ 87 (520)
+|.|||+|.+|.++|+.|++.|. .+.++|++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 69999999999999999999994 899999975
No 408
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.42 E-value=0.16 Score=49.85 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 69999999999999999999999999999875
No 409
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=92.37 E-value=0.18 Score=51.43 Aligned_cols=34 Identities=32% Similarity=0.598 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
..+|+|+|+|.+|+.+|..|.+.|.+|++++++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4569999999999999999999999999999874
No 410
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=92.35 E-value=0.17 Score=46.60 Aligned_cols=35 Identities=29% Similarity=0.530 Sum_probs=29.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
..-+|+|||+|.++.-+|..|++.|.+|+++=|++
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 34689999999999999999999999999999875
No 411
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=92.34 E-value=0.23 Score=46.12 Aligned_cols=33 Identities=36% Similarity=0.434 Sum_probs=30.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~ 86 (520)
...|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 357999999999999999999999999999864
No 412
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.29 E-value=0.15 Score=53.99 Aligned_cols=35 Identities=34% Similarity=0.558 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
..-+|+|+|+|++|+.++..++..|.+|.++|+++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35689999999999999999999999999999874
No 413
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.28 E-value=0.23 Score=41.29 Aligned_cols=31 Identities=42% Similarity=0.652 Sum_probs=28.4
Q ss_pred EEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 57 VIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 57 V~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
|+|+|.|..|..+|-.|.+.+.+|+++|+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7999999999999999999888999999985
No 414
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=92.18 E-value=0.16 Score=43.77 Aligned_cols=32 Identities=34% Similarity=0.430 Sum_probs=28.1
Q ss_pred EEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 57 VIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 57 V~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
++|+|||+.+.++|..++..|++|+|+|.+++
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999998854
No 415
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=92.13 E-value=0.2 Score=43.16 Aligned_cols=34 Identities=29% Similarity=0.691 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCC-eEEEEccCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~ 87 (520)
+..|+|+|+|-.|...|..|++.|+ +++|+|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 3579999999999999999999999 799999885
No 416
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=92.10 E-value=0.22 Score=50.18 Aligned_cols=34 Identities=41% Similarity=0.635 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCC-eEEEEccCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~ 87 (520)
+..|+|||+|-.|..+|..|++.|+ +++|+|++.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4679999999999999999999998 899999985
No 417
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.09 E-value=0.19 Score=50.41 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
+|.|||+|..|.+.|..|++.|.+|.++.|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 59999999999999999999999999999964
No 418
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=92.09 E-value=0.19 Score=50.70 Aligned_cols=32 Identities=31% Similarity=0.530 Sum_probs=30.2
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~ 86 (520)
.+|.|||+|..|.+.|..|++.|++|++++|+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 46999999999999999999999999999985
No 419
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.98 E-value=0.19 Score=51.67 Aligned_cols=34 Identities=32% Similarity=0.418 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
.-.|+|+|+|+.|+.+|..|+..|.+|+++|+++
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 3579999999999999999999999999999875
No 420
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=91.89 E-value=0.24 Score=49.11 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCC-eEEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~ 87 (520)
.+|.|||+|..|+..|+.|+.+|. +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 479999999999999999999887 899999853
No 421
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.86 E-value=0.26 Score=49.07 Aligned_cols=35 Identities=37% Similarity=0.593 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
+..+|.|||+|-.|.+.|..|++.|++|.+++|+.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 34579999999999999999999999999999975
No 422
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=91.82 E-value=1.8 Score=40.18 Aligned_cols=102 Identities=23% Similarity=0.287 Sum_probs=73.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEECCc
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGK 133 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 133 (520)
+...+|||||=+-+-=|++|.+.+-+|.++-|+.. |
T Consensus 157 nk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~-----------------f--------------------------- 192 (322)
T KOG0404|consen 157 NKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDH-----------------F--------------------------- 192 (322)
T ss_pred CCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhh-----------------h---------------------------
Confidence 34688999999999999999999999999988741 0
Q ss_pred cccccCCCcCCCCCccceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCeEEE
Q 009994 134 STRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIV 211 (520)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~-~~g~~~~~~ad~vV~ 211 (520)
+-...+.+++.+.|++++.+++ +++..-+.+.+.+.+++. ..|+...+..+-+.-
T Consensus 193 -----------------------RAs~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf 249 (322)
T KOG0404|consen 193 -----------------------RASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFF 249 (322)
T ss_pred -----------------------hHHHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEE
Confidence 0123455677788899999998 666665655566677765 456666666776766
Q ss_pred ecCCcchhhhhh
Q 009994 212 CDGCFSNLRRSL 223 (520)
Q Consensus 212 AdG~~S~vR~~l 223 (520)
+=| +|+--+.+
T Consensus 250 ~IG-H~Pat~~l 260 (322)
T KOG0404|consen 250 AIG-HSPATKFL 260 (322)
T ss_pred Eec-CCchhhHh
Confidence 666 45544444
No 423
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=91.72 E-value=0.21 Score=51.91 Aligned_cols=34 Identities=15% Similarity=0.308 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
..|.|||.|-.|+.+|..|+++|++|+++|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 4699999999999999999999999999998753
No 424
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=91.72 E-value=0.29 Score=43.84 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=31.3
Q ss_pred CCCCcEEEECCCH-HHHHHHHHHhhCCCeEEEEccC
Q 009994 52 GSPTDVIIVGAGV-AGAALAHTLGKDGRRVHVIERD 86 (520)
Q Consensus 52 ~~~~dV~IVGaG~-aGl~~A~~La~~G~~V~v~Er~ 86 (520)
-...+|+|||+|- +|..+|..|.++|.+|+++.|.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 3457899999996 6999999999999999999987
No 425
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.67 E-value=0.26 Score=49.64 Aligned_cols=35 Identities=37% Similarity=0.639 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCC-eEEEEccCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~ 87 (520)
.+..|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 35689999999999999999999999 899999974
No 426
>PRK04148 hypothetical protein; Provisional
Probab=91.62 E-value=0.2 Score=42.86 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=29.8
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
..|++||.| .|...|..|++.|++|+.+|.++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence 479999999 99999999999999999999885
No 427
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=91.54 E-value=0.31 Score=45.25 Aligned_cols=35 Identities=29% Similarity=0.464 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCC-eEEEEccCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~ 87 (520)
.+..|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 45689999999999999999999998 899999874
No 428
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=91.39 E-value=0.36 Score=47.96 Aligned_cols=36 Identities=33% Similarity=0.520 Sum_probs=34.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
+.|||+|+|-|+.=+.++..|+..|.+|+.+||++.
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~ 40 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDY 40 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCc
Confidence 479999999999999999999999999999999874
No 429
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=91.19 E-value=0.32 Score=46.38 Aligned_cols=35 Identities=29% Similarity=0.481 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCC-eEEEEccCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~ 87 (520)
....|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 34689999999999999999999998 799999884
No 430
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=91.17 E-value=0.69 Score=49.61 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=29.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
.-+|+|||+|.+|.=.|..|++...+|.+.=|+.
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 3579999999999999999999999999998874
No 431
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.11 E-value=0.33 Score=48.32 Aligned_cols=33 Identities=27% Similarity=0.517 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
.+|.|||+|..|.+.|..|++.|++|+++|++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 369999999999999999999999999999874
No 432
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=91.08 E-value=0.23 Score=51.66 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
+|.|||.|..|+.+|..|++.|++|+++++++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 599999999999999999999999999999753
No 433
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=90.98 E-value=0.4 Score=41.64 Aligned_cols=33 Identities=33% Similarity=0.544 Sum_probs=29.7
Q ss_pred CcEEEECC-CHHHHHHHHHHhhCCC--eEEEEccCC
Q 009994 55 TDVIIVGA-GVAGAALAHTLGKDGR--RVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGa-G~aGl~~A~~La~~G~--~V~v~Er~~ 87 (520)
.+|.|||+ |..|.++|+.|...++ ++.|+|+..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 37999999 9999999999999876 799999984
No 434
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.91 E-value=0.33 Score=48.75 Aligned_cols=33 Identities=33% Similarity=0.421 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
+.|.|||+|..|.+.|..|++.|++|++++|+.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 479999999999999999999999999999974
No 435
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.85 E-value=0.35 Score=43.67 Aligned_cols=32 Identities=34% Similarity=0.536 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHhhCCC-eEEEEccCC
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~ 87 (520)
.|+|||+|-.|...|..|++.|+ +++|+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999999 599999984
No 436
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=90.76 E-value=0.33 Score=47.62 Aligned_cols=33 Identities=42% Similarity=0.572 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCC-eEEEEccC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERD 86 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~ 86 (520)
..+|+|+|+|-+|.++|..|++.|. +|+|++|+
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3579999999999999999999998 79999997
No 437
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=90.75 E-value=0.46 Score=47.39 Aligned_cols=35 Identities=26% Similarity=0.479 Sum_probs=31.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCC--eEEEEccCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGR--RVHVIERDV 87 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~--~V~v~Er~~ 87 (520)
...+|.|||+|-+|.++|+.|+..|+ .+.|+|.+.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 34589999999999999999999998 799999864
No 438
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=90.57 E-value=0.4 Score=44.80 Aligned_cols=35 Identities=31% Similarity=0.497 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCe-EEEEccCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRR-VHVIERDV 87 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~-V~v~Er~~ 87 (520)
....|+|||+|-.|..+|..|++.|+. ++|+|.+.
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 356899999999999999999999994 99999884
No 439
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=90.45 E-value=0.35 Score=47.72 Aligned_cols=32 Identities=31% Similarity=0.505 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
.|.|||+|..|...|..|++.|++|+++|+++
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 59999999999999999999999999999875
No 440
>PRK08328 hypothetical protein; Provisional
Probab=90.43 E-value=0.42 Score=45.33 Aligned_cols=34 Identities=29% Similarity=0.497 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCC-eEEEEccCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~ 87 (520)
+..|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4679999999999999999999998 699998874
No 441
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=90.34 E-value=0.37 Score=48.17 Aligned_cols=32 Identities=38% Similarity=0.620 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
+|.|||+|..|...|..|++.|++|++++|++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999974
No 442
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=90.33 E-value=0.43 Score=45.73 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCC-eEEEEccCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~ 87 (520)
.+.+|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 35689999999999999999999998 799999874
No 443
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=90.29 E-value=0.34 Score=47.41 Aligned_cols=32 Identities=31% Similarity=0.419 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
+|.|||.|..|.+.|..|+++|++|.++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999999999999999999999999874
No 444
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=90.03 E-value=0.51 Score=40.96 Aligned_cols=32 Identities=31% Similarity=0.614 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHhhCCC-eEEEEccCC
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~ 87 (520)
.|+|||+|-.|...|..|++.|+ +++|+|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 48999999999999999999998 799999885
No 445
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=89.99 E-value=1.2 Score=50.48 Aligned_cols=32 Identities=9% Similarity=0.059 Sum_probs=25.1
Q ss_pred CcEEEECCCHHHHHHHHHHhh---CCCeEEEEccC
Q 009994 55 TDVIIVGAGVAGAALAHTLGK---DGRRVHVIERD 86 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~---~G~~V~v~Er~ 86 (520)
.+|+|||||.+|+=+|....+ .+..+.+.+..
T Consensus 551 k~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~ 585 (1028)
T PRK06567 551 MPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYI 585 (1028)
T ss_pred CCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhh
Confidence 479999999999999985544 46677777764
No 446
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=89.99 E-value=0.56 Score=47.27 Aligned_cols=48 Identities=25% Similarity=0.217 Sum_probs=34.3
Q ss_pred HHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCeEEEecCCc
Q 009994 163 REKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCF 216 (520)
Q Consensus 163 ~~~~~~~~~v~i~~~~-v~~~~~~~~~v~gv~v~~~~g~~~~~~ad~vV~AdG~~ 216 (520)
.+.+++ +||.++-+. |.++...... +.++..||.+ ++.|+||+|.|.-
T Consensus 400 ~ekir~-~GV~V~pna~v~sv~~~~~n---l~lkL~dG~~--l~tD~vVvavG~e 448 (659)
T KOG1346|consen 400 IEKIRK-GGVDVRPNAKVESVRKCCKN---LVLKLSDGSE--LRTDLVVVAVGEE 448 (659)
T ss_pred HHHHHh-cCceeccchhhhhhhhhccc---eEEEecCCCe--eeeeeEEEEecCC
Confidence 344444 388888776 7777766654 5577888985 5599999999954
No 447
>PRK06223 malate dehydrogenase; Reviewed
Probab=89.97 E-value=0.45 Score=47.28 Aligned_cols=33 Identities=33% Similarity=0.430 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCC-eEEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~ 87 (520)
.+|.|||+|..|...|..++..|+ +|.++|++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 479999999999999999999876 999999964
No 448
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=89.83 E-value=0.39 Score=49.37 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=29.1
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
+|.|||.|..|+.+|..++. |++|+++|++..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 58999999999999998885 999999999853
No 449
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=89.70 E-value=0.47 Score=44.84 Aligned_cols=32 Identities=34% Similarity=0.599 Sum_probs=29.7
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCe---EEEEccC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRR---VHVIERD 86 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~---V~v~Er~ 86 (520)
..|+|+|||-+|...|..|.+.|.+ +.|++|+
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 4799999999999999999999985 9999997
No 450
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=89.62 E-value=0.42 Score=50.39 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=30.2
Q ss_pred CcEEEECCCHHHHHHHHHHhhC--CCeEEEEccCCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKD--GRRVHVIERDVT 88 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~--G~~V~v~Er~~~ 88 (520)
++|.|||+|-+|+.+|..|+++ |++|+.+|.+..
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 4699999999999999999988 588999998753
No 451
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=89.59 E-value=0.44 Score=48.92 Aligned_cols=34 Identities=32% Similarity=0.397 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
.-.|+|+|.|+.|..+|..|+..|.+|+++|+++
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 4579999999999999999999999999999875
No 452
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=89.58 E-value=0.55 Score=46.93 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCC-eEEEEccCCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDVT 88 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~~ 88 (520)
.+|.|||||-.|.+.|+.++..|+ +++|+|.++.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 589999999999999999999996 9999999764
No 453
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=89.56 E-value=0.48 Score=50.44 Aligned_cols=34 Identities=26% Similarity=0.492 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
..|.|||+|..|...|..|++.|++|+++|++++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3599999999999999999999999999999853
No 454
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=89.50 E-value=0.56 Score=44.42 Aligned_cols=35 Identities=31% Similarity=0.552 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCC-eEEEEccCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~ 87 (520)
.+..|+|||+|..|...|..|++.|+ +++|+|.+.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 34689999999999999999999998 799999874
No 455
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=89.50 E-value=0.23 Score=42.20 Aligned_cols=35 Identities=31% Similarity=0.468 Sum_probs=28.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~ 86 (520)
+...+|-|||+|-+|.++|..|.+.|+.|.-+..+
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSR 42 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 55789999999999999999999999999877644
No 456
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=89.48 E-value=0.54 Score=44.78 Aligned_cols=36 Identities=31% Similarity=0.486 Sum_probs=31.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCC-----------CeEEEEccCC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDG-----------RRVHVIERDV 87 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G-----------~~V~v~Er~~ 87 (520)
+...+|+|||+|-.|...+-.|++.| .+++|+|.+.
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 35678999999999999999999974 3889999874
No 457
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=89.47 E-value=0.44 Score=42.13 Aligned_cols=33 Identities=36% Similarity=0.542 Sum_probs=27.3
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
-.++|+|-|-.|-.+|..|+..|.+|+|.|.++
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 469999999999999999999999999999985
No 458
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=89.41 E-value=0.47 Score=50.52 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
.+|.|||+|..|...|..|+++|++|+|+|+++
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 369999999999999999999999999999975
No 459
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=89.41 E-value=0.49 Score=46.98 Aligned_cols=32 Identities=31% Similarity=0.580 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHhhCC--CeEEEEccCC
Q 009994 56 DVIIVGAGVAGAALAHTLGKDG--RRVHVIERDV 87 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G--~~V~v~Er~~ 87 (520)
+|+|||+|-+|.++|+.|+..| .++.|+|++.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 5999999999999999999999 4799999975
No 460
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=89.38 E-value=0.44 Score=48.37 Aligned_cols=32 Identities=31% Similarity=0.371 Sum_probs=27.9
Q ss_pred cEEEECCCHHHHHHHHHHhhCCC-eEEEEccCC
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~ 87 (520)
.|+|+|+||.||.++..++..|. +|+++|+++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~ 203 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP 203 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 69999999999999999988996 677778874
No 461
>PRK08223 hypothetical protein; Validated
Probab=89.37 E-value=0.54 Score=45.82 Aligned_cols=35 Identities=29% Similarity=0.375 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCC-eEEEEccCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~ 87 (520)
.+..|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 35689999999999999999999998 799999874
No 462
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=89.33 E-value=0.56 Score=46.32 Aligned_cols=34 Identities=35% Similarity=0.488 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
..+|+|+|.|.+|..+|..|++.|.+|++++|++
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4689999999999999999999999999999984
No 463
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=89.33 E-value=0.62 Score=44.63 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=32.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
....++|+|||+.+..+|..++..|++|+|+|-+++
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 457899999999999999999999999999997754
No 464
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.11 E-value=0.63 Score=44.07 Aligned_cols=34 Identities=32% Similarity=0.532 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCC-eEEEEccCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~ 87 (520)
+..|+|||.|-.|..+|..|++.|+ +++|+|.+.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 4689999999999999999999998 899999874
No 465
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=89.03 E-value=0.51 Score=49.85 Aligned_cols=34 Identities=32% Similarity=0.510 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
...|+|+|+|++|+.++..+...|.+|+++|++.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999984
No 466
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=88.94 E-value=0.52 Score=47.91 Aligned_cols=34 Identities=29% Similarity=0.669 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHhhCC-CeEEEEccCCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDG-RRVHVIERDVT 88 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G-~~V~v~Er~~~ 88 (520)
.+|+|+|+|-.|.++|.-|+++| .+|++.+|..+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~ 36 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE 36 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence 47999999999999999999999 89999999854
No 467
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=88.91 E-value=0.5 Score=46.80 Aligned_cols=31 Identities=32% Similarity=0.419 Sum_probs=28.6
Q ss_pred EEEECCCHHHHHHHHHHhhCCC-eEEEEccCC
Q 009994 57 VIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (520)
Q Consensus 57 V~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~ 87 (520)
|.|||+|-.|..+|..|+.+|+ +|+++|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999999887 999999984
No 468
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=88.80 E-value=1.3 Score=47.12 Aligned_cols=35 Identities=34% Similarity=0.602 Sum_probs=33.0
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTE 89 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~ 89 (520)
+||+|||||++||++|..|+++|++|+|+||+..+
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 35 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIP 35 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 69999999999999999999999999999998754
No 469
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=88.74 E-value=0.6 Score=43.89 Aligned_cols=32 Identities=31% Similarity=0.597 Sum_probs=29.4
Q ss_pred cEEEEC-CCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 56 DVIIVG-AGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 56 dV~IVG-aG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
+|.||| +|..|.++|..|++.|.+|.++.|++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 589997 79999999999999999999998864
No 470
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=88.72 E-value=0.48 Score=52.83 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
..|.|||||..|...|..+++.|++|+++|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 369999999999999999999999999999985
No 471
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.64 E-value=0.74 Score=45.81 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCC--eEEEEccCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGR--RVHVIERDV 87 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~--~V~v~Er~~ 87 (520)
+.+|.|||+|-+|.++|+.|+..|. .+.|+|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4589999999999999999999886 699999864
No 472
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=88.60 E-value=0.54 Score=49.60 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCC-eEEEEccCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~ 87 (520)
.-+|+|||||..|+-+|..|++.|. +|++++++.
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3589999999999999999999998 899999863
No 473
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=88.48 E-value=1.1 Score=48.88 Aligned_cols=34 Identities=38% Similarity=0.591 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
+-+|+|+|.|..|-..|..|.++|++++++|+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~ 433 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDI 433 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCH
Confidence 4579999999999999999999999999999985
No 474
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=88.46 E-value=0.57 Score=50.00 Aligned_cols=34 Identities=26% Similarity=0.503 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
-.|.|||+|..|...|..|++.|++|+++|++++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3599999999999999999999999999999853
No 475
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=88.41 E-value=0.71 Score=41.15 Aligned_cols=33 Identities=33% Similarity=0.532 Sum_probs=28.9
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
.+|-|||-|-.|...|..|.++|++|.+++|++
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 368999999999999999999999999999884
No 476
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=88.39 E-value=0.52 Score=52.46 Aligned_cols=34 Identities=18% Similarity=0.389 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
-.|.|||||..|...|..++++|++|+++|.+.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3699999999999999999999999999999853
No 477
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=88.33 E-value=0.63 Score=48.15 Aligned_cols=34 Identities=35% Similarity=0.386 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
.-.|+|+|.|..|..+|..|+..|.+|+++|+++
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 4579999999999999999999999999999875
No 478
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=88.33 E-value=0.7 Score=45.90 Aligned_cols=33 Identities=24% Similarity=0.489 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCC--eEEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGR--RVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~--~V~v~Er~~ 87 (520)
.+|.|||+|..|.+.|..|++.|. +|.+++++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 479999999999999999999995 899999874
No 479
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.27 E-value=0.8 Score=48.11 Aligned_cols=33 Identities=21% Similarity=0.492 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
..|+|+|.|.+|+++|..|+++|.+|++.|...
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~ 38 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAEL 38 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 469999999999999999999999999999765
No 480
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=88.18 E-value=8.3 Score=39.47 Aligned_cols=117 Identities=18% Similarity=0.196 Sum_probs=68.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCCCCceeeeeeccchHHHHHhcCchhHHhhcccceeceEEEEEC
Q 009994 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKD 131 (520)
Q Consensus 52 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 131 (520)
.++..|+|+|+|=+|.++.-.|-..-++|+|+..+...- =..+.|.+
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFl----FTPLLpS~----------------------------- 99 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFL----FTPLLPST----------------------------- 99 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhccccccceEEeccccceE----EeeccCCc-----------------------------
Confidence 556789999999999999888888889999998763110 00000000
Q ss_pred CccccccCCCcCCCCCccceeecchHHHHHHHHHHHc-CCCeEEEeceEEEEEeeCCeEEEEEEEeCCC--cEEEEecCe
Q 009994 132 GKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAAS-LPNVRLEQGTVTSLLEENGTIKGVQYKTKDG--QELRAYAPL 208 (520)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~v~i~~~~v~~~~~~~~~v~gv~v~~~~g--~~~~~~ad~ 208 (520)
+.|. ++-....+-.+..++. .+++.+.+...+.+..+...+. ++....++ .+..+..|+
T Consensus 100 ----------------~vGT-ve~rSIvEPIr~i~r~k~~~~~y~eAec~~iDp~~k~V~-~~s~t~~~~~~e~~i~YDy 161 (491)
T KOG2495|consen 100 ----------------TVGT-VELRSIVEPIRAIARKKNGEVKYLEAECTKIDPDNKKVH-CRSLTADSSDKEFVIGYDY 161 (491)
T ss_pred ----------------cccc-eeehhhhhhHHHHhhccCCCceEEecccEeecccccEEE-EeeeccCCCcceeeecccE
Confidence 0000 1111122222222222 2357777777777766655433 44444443 346688999
Q ss_pred EEEecCCcchh
Q 009994 209 TIVCDGCFSNL 219 (520)
Q Consensus 209 vV~AdG~~S~v 219 (520)
+|.|.|+....
T Consensus 162 LViA~GA~~~T 172 (491)
T KOG2495|consen 162 LVIAVGAEPNT 172 (491)
T ss_pred EEEeccCCCCC
Confidence 99999998753
No 481
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.14 E-value=0.61 Score=49.64 Aligned_cols=32 Identities=38% Similarity=0.592 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~ 86 (520)
-.|+|+|.|.+|++++..|.+.|.+|++.|+.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46999999999999999999999999999965
No 482
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=88.03 E-value=0.86 Score=41.87 Aligned_cols=32 Identities=31% Similarity=0.619 Sum_probs=29.5
Q ss_pred CcEEEECC-CHHHHHHHHHHhhCCCeEEEEccC
Q 009994 55 TDVIIVGA-GVAGAALAHTLGKDGRRVHVIERD 86 (520)
Q Consensus 55 ~dV~IVGa-G~aGl~~A~~La~~G~~V~v~Er~ 86 (520)
..++|+|| |..|..+|..|++.|.+|+++.|+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 47999997 999999999999999999999876
No 483
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.03 E-value=0.78 Score=48.22 Aligned_cols=32 Identities=31% Similarity=0.380 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
.|+|+|+|..|.++|..|++.|.+|++.|+..
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 58999999999999999999999999999764
No 484
>PTZ00117 malate dehydrogenase; Provisional
Probab=87.88 E-value=0.83 Score=45.65 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCC-CeEEEEccCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDG-RRVHVIERDV 87 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G-~~V~v~Er~~ 87 (520)
..+|.|||||-.|.++|+.|+..| .++.|+|.+.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 458999999999999999999999 5899999875
No 485
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=87.87 E-value=0.6 Score=46.34 Aligned_cols=32 Identities=34% Similarity=0.630 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
.|.|+|+|-.|...|+.|++.|..|+++=|.+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 69999999999999999999998888888764
No 486
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=87.86 E-value=0.8 Score=42.33 Aligned_cols=34 Identities=29% Similarity=0.596 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCC-eEEEEccCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~ 87 (520)
+..|+|||+|..|...|-.|++.|+ +++|+|.+.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 4689999999999999999999998 599999874
No 487
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=87.79 E-value=0.61 Score=43.10 Aligned_cols=34 Identities=29% Similarity=0.513 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
...|.|||||..|.-.|...+..|++|.|++++.
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 4579999999999999999999999999999985
No 488
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=87.64 E-value=0.95 Score=41.89 Aligned_cols=32 Identities=28% Similarity=0.440 Sum_probs=30.2
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~ 86 (520)
..|+|+|.|-.|..+|..|.+.|.+|++.|++
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46999999999999999999999999999876
No 489
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=87.62 E-value=0.67 Score=43.43 Aligned_cols=34 Identities=29% Similarity=0.499 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCC-eEEEEccCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~ 87 (520)
+..|+|||.|-+|..++-+|+|.|+ +.+|+|.+.
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~ 64 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDD 64 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccc
Confidence 4579999999999999999999998 899999985
No 490
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.50 E-value=0.71 Score=48.58 Aligned_cols=33 Identities=42% Similarity=0.643 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEccCCC
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~ 88 (520)
+|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 699999999999999999999999999999753
No 491
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.45 E-value=0.72 Score=48.69 Aligned_cols=33 Identities=30% Similarity=0.464 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
..|+|+|.|.+|.++|..|.+.|++|++.|+..
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 369999999999999999999999999999874
No 492
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=87.37 E-value=0.86 Score=42.07 Aligned_cols=34 Identities=18% Similarity=0.395 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCC-eEEEEccCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~ 87 (520)
+..|+|||+|..|...|..|++.|+ +++++|.+.
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 4689999999999999999999999 599999874
No 493
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=87.37 E-value=0.87 Score=46.45 Aligned_cols=35 Identities=26% Similarity=0.527 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCC-eEEEEccCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~ 87 (520)
.+..|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 45689999999999999999999998 899999884
No 494
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=87.30 E-value=2.9 Score=40.65 Aligned_cols=52 Identities=25% Similarity=0.403 Sum_probs=37.9
Q ss_pred cEEEECCCHHHHHHHHHHhhCCC-eEEEEccCCCCCCceeeeeeccchHHHHHhcCch
Q 009994 56 DVIIVGAGVAGAALAHTLGKDGR-RVHVIERDVTEPDRIVGELLQPGGYLKLVELGLE 112 (520)
Q Consensus 56 dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~ 112 (520)
=|+|||+|-+|...+..|.|.|. ++.|+|-+.-. -..++..+...|...|..
T Consensus 76 yVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVS-----lsSLNrHs~Atl~DVG~P 128 (430)
T KOG2018|consen 76 YVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVS-----LSSLNRHSCATLADVGTP 128 (430)
T ss_pred EEEEEecCchhHHHHHHHHHhcCceEEEechhhcc-----HhhhhhhhhhhHhhcCCc
Confidence 39999999999999999999997 68888876311 123444455566666644
No 495
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=87.18 E-value=0.89 Score=44.74 Aligned_cols=33 Identities=21% Similarity=0.406 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCe-EEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRR-VHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~-V~v~Er~~ 87 (520)
..++|+|||-+|.++|..|++.|.+ |+|+.|+.
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 4699999999999999999999996 99999873
No 496
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=87.06 E-value=0.92 Score=44.57 Aligned_cols=34 Identities=32% Similarity=0.514 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
...|+|+|+|..|.++|..|+..|.+|++++|..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4579999999999999999999999999999974
No 497
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=86.95 E-value=0.71 Score=51.58 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEccCC
Q 009994 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~ 87 (520)
..|.|||||..|...|..++..|++|+++|+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 369999999999999999999999999999985
No 498
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=86.84 E-value=1.6 Score=34.16 Aligned_cols=31 Identities=32% Similarity=0.707 Sum_probs=28.5
Q ss_pred CcEEEECCCHHHHHHHHHHhhC-CCeEEEEcc
Q 009994 55 TDVIIVGAGVAGAALAHTLGKD-GRRVHVIER 85 (520)
Q Consensus 55 ~dV~IVGaG~aGl~~A~~La~~-G~~V~v~Er 85 (520)
.+++|+|+|-+|..+|..|.+. +.++.+++|
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 4699999999999999999998 678999998
No 499
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=86.81 E-value=0.91 Score=46.10 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCC-eEEEEccCC
Q 009994 53 SPTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (520)
Q Consensus 53 ~~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~Er~~ 87 (520)
.+..|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 34689999999999999999999998 799999884
No 500
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=86.80 E-value=0.79 Score=47.62 Aligned_cols=36 Identities=31% Similarity=0.364 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEccCCCC
Q 009994 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTE 89 (520)
Q Consensus 54 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~ 89 (520)
...|+|+|-|.+|+++|..|.+.|.+|++.|.++.+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 468999999999999999999999999999987643
Done!