Query 009996
Match_columns 520
No_of_seqs 261 out of 1223
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 17:35:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009996.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009996hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xph_A Sentrin-specific protea 100.0 4.6E-51 1.6E-55 401.7 24.0 223 284-518 11-236 (238)
2 1th0_A SMT3-, sentrin-specific 100.0 4.4E-51 1.5E-55 398.7 23.5 220 287-518 2-224 (226)
3 1euv_A ULP1 protease; SUMO hyd 100.0 4.7E-47 1.6E-51 369.3 20.0 212 286-518 3-219 (221)
4 3eay_A Sentrin-specific protea 100.0 1.7E-42 5.8E-47 354.8 18.1 200 314-519 29-315 (323)
5 2bkr_A Sentrin-specific protea 100.0 1.9E-39 6.5E-44 313.2 16.8 191 308-519 3-211 (212)
6 2oix_A Xanthomonas outer prote 100.0 1.7E-32 5.9E-37 260.9 14.7 169 330-517 1-181 (186)
7 4ekf_A Adenain; alpha and beta 96.4 0.021 7.3E-07 54.1 10.8 85 409-494 52-137 (204)
8 2cxa_A Leucyl/phenylalanyl-tRN 9.2 1.4E+02 0.0048 29.4 2.2 20 329-348 124-143 (256)
9 3k8u_A Putative ABC transporte 7.2 2.4E+02 0.0083 24.3 2.7 21 471-491 9-29 (156)
10 1cxq_A Avian sarcoma virus int 7.1 3.7E+02 0.013 22.7 3.9 32 396-427 13-44 (162)
No 1
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=100.00 E-value=4.6e-51 Score=401.69 Aligned_cols=223 Identities=39% Similarity=0.695 Sum_probs=204.9
Q ss_pred CCCCCCCCHHHHHHHHHHHcc-CCCceEeecCCCCeeechhhhcccCCCCccChHHHHHHHHHHHHHhhcCCccccccee
Q 009996 284 REPFIPLTKEEEAAVERAFSA-NWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHF 362 (520)
Q Consensus 284 ~~~~~pLS~e~~~~V~~als~-~~~~vLvs~~~~~i~It~~DL~~L~~g~WLNDeVInfYl~lL~~r~~~~p~~~~r~~~ 362 (520)
++.|+|||+|++++|++++.+ ++++|++. .+++.|+++|+.+|.+++||||+|||||+.+|.++.... ..+++|+
T Consensus 11 ~~~~~~lt~e~~~~v~~~l~~~~~~~vl~~--~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~--~~~~~~~ 86 (238)
T 2xph_A 11 EDEFPEITEEMEKEIKNVFRNGNQDEVLSE--AFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEK--GLPSVHA 86 (238)
T ss_dssp -CCCCCCCHHHHHHHHHHSSSSCTTCCCEE--ETTEEECHHHHHTTSTTCCCCHHHHHHHHHHHHHHTTST--TSCCEEE
T ss_pred ccCCCCCCHHHHHHHHHHHcCCChhheeec--CCCcEEeHHHHhhcCCCCccCHHHHHHHHHHHHHhhhhc--CCCceee
Confidence 367899999999999999987 67888875 479999999999999999999999999999998876432 3578999
Q ss_pred eehhhhhhhccCCCCCchhHHHHhhhccccccCcccCCceeeeeecCcceEEEEEeccCCcceecccCCCCCHHHHHHHH
Q 009996 363 FNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLA 442 (520)
Q Consensus 363 FnSfFy~kL~~~~~~~~y~~VrRWtk~kkv~~dIfskD~IfIPIN~~sHW~L~VId~~~k~I~~yDSLg~~~~~vl~~L~ 442 (520)
|+||||++|... +|..|++|++. .++|++|+||||||.++||+|+|||+++++|+|||||++.+...+..|.
T Consensus 87 f~sff~~~l~~~----~~~~v~~w~~~----~~l~~~~~i~iPin~~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~l~ 158 (238)
T 2xph_A 87 FNTFFFTKLKTA----GYQAVKRWTKK----VDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILL 158 (238)
T ss_dssp CCTTTTHHHHTT----CHHHHTTTTTT----CCGGGSSEEEEEEEETTEEEEEEEETTTTEEEEECTTCCCCHHHHHHHH
T ss_pred eecHHHHHhhhc----ccHHHHHHhcc----CCcccCCEEEEcccCCCceEEEEEEcccceEEEeecccCCCHHHHHHHH
Confidence 999999999876 79999999973 5799999999999999999999999999999999999999988999999
Q ss_pred HHHHHHHHhhcCCCCCCCCceee--ccCCCCCCCCCCchHHHHHHHHHHHHcCCCCccCCCChHHHHHHHHHHHHhhc
Q 009996 443 RYFVEEVRDKCGKDIDVSDWEQE--FVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMR 518 (520)
Q Consensus 443 ~yL~~E~k~k~g~~~d~s~W~~~--~v~~vPQQ~Ng~DCGVFvL~fae~lsrg~~l~FtQ~dMp~~R~rma~EIl~lr 518 (520)
.||..++..+.+..++...|+.. ...++|||.||+|||||||+||++++++.+++|+|++|++||++|+.+|++++
T Consensus 159 ~~L~~e~~~k~~~~~~~~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~~~~f~q~dm~~~R~~m~~eil~~~ 236 (238)
T 2xph_A 159 QYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHRK 236 (238)
T ss_dssp HHHHHHHHHHHCSCCCCTTCEEEECCSSSSCCCSBGGGHHHHHHHHHHHHHTTCCCCCCGGGHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCcCcccceecccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCcChhhHHHHHHHHHHHHHhCC
Confidence 99999999998888999999875 35789999999999999999999999999999999999999999999999986
No 2
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=100.00 E-value=4.4e-51 Score=398.71 Aligned_cols=220 Identities=40% Similarity=0.722 Sum_probs=203.4
Q ss_pred CCCCCHHHHHHHHHHHcc-CCCceEeecCCCCeeechhhhcccCCCCccChHHHHHHHHHHHHHhhcCCcccccceeeeh
Q 009996 287 FIPLTKEEEAAVERAFSA-NWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNT 365 (520)
Q Consensus 287 ~~pLS~e~~~~V~~als~-~~~~vLvs~~~~~i~It~~DL~~L~~g~WLNDeVInfYl~lL~~r~~~~p~~~~r~~~FnS 365 (520)
|+|||+|++++|+++|.. ++++++++. +++.|+++|+.+|.+++||||+|||||+.+|.++.... ..+++|+|+|
T Consensus 2 ~~~lt~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~--~~~~~~~f~s 77 (226)
T 1th0_A 2 LLELTEDMEKEISNALGHGPQDEILSSA--FKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQ--GYPALHVFST 77 (226)
T ss_dssp CCCCCHHHHHHHHHHHSSSCTTCEEEEE--TTEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHHH--TCCCEEECCT
T ss_pred CCCCCHHHHHHHHHHhccCCccceeecc--CCeEEEHHHHhhcCCCCccChHHHHHHHHHHHHhhhhc--cCCcEEEEeH
Confidence 679999999999999986 888999875 79999999999999999999999999999998876432 3478999999
Q ss_pred hhhhhhccCCCCCchhHHHHhhhccccccCcccCCceeeeeecCcceEEEEEeccCCcceecccCCCCCHHHHHHHHHHH
Q 009996 366 FFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYF 445 (520)
Q Consensus 366 fFy~kL~~~~~~~~y~~VrRWtk~kkv~~dIfskD~IfIPIN~~sHW~L~VId~~~k~I~~yDSLg~~~~~vl~~L~~yL 445 (520)
|||++|... +|..|++|++ +.++|++++||||||.++||+|+|||+++++|+|||||++.+..+.+.|..||
T Consensus 78 ~f~~~l~~~----~~~~v~~w~~----~~~l~~~~~i~iPin~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~l~~~l 149 (226)
T 1th0_A 78 FFYPKLKSG----GYQAVKRWTK----GVNLFEQEIILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYL 149 (226)
T ss_dssp THHHHHHHH----TGGGTGGGGT----TCCGGGSSEEEEEEEETTEEEEEEEETTTTEEEEECTTCCCCHHHHHHHHHHH
T ss_pred HHHHHhhhc----ccHHHHHHhh----cCCcccCCEEEEeEEeCcEEEEEEEEcCCCceEEEcCCCCCchHHHHHHHHHH
Confidence 999999876 7899999997 36899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCceeec--cCCCCCCCCCCchHHHHHHHHHHHHcCCCCccCCCChHHHHHHHHHHHHhhc
Q 009996 446 VEEVRDKCGKDIDVSDWEQEF--VLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMR 518 (520)
Q Consensus 446 ~~E~k~k~g~~~d~s~W~~~~--v~~vPQQ~Ng~DCGVFvL~fae~lsrg~~l~FtQ~dMp~~R~rma~EIl~lr 518 (520)
..++.++.+.+++.++|+... ..++|||.||+|||||||+||++++++.+++|+|++|++||++|+.||++++
T Consensus 150 ~~e~~~k~~~~~~~~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~~~~~~~~~~~f~q~dm~~~R~~~~~ei~~~~ 224 (226)
T 1th0_A 150 QDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQQ 224 (226)
T ss_dssp HHHHHHHTSCCCCGGGCEEEECCTTTSCCCCSSSCHHHHHHHHHHHHTTTCCCCCCGGGHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCCCCcccceeccccCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCccChhhHHHHHHHHHHHHHhCC
Confidence 999999988888889998753 4689999999999999999999999999999999999999999999999986
No 3
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=100.00 E-value=4.7e-47 Score=369.31 Aligned_cols=212 Identities=32% Similarity=0.576 Sum_probs=188.5
Q ss_pred CCCCCCHHHHHHHHHHHccCCCceEeecCCCCeeechhhhcccCCCCccChHHHHHHHHHHHHHhhcCCcccccceeeeh
Q 009996 286 PFIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNT 365 (520)
Q Consensus 286 ~~~pLS~e~~~~V~~als~~~~~vLvs~~~~~i~It~~DL~~L~~g~WLNDeVInfYl~lL~~r~~~~p~~~~r~~~FnS 365 (520)
.++|||+|++.+|+++|..+++++++. .+++.|+.+|+.+|.+++||||+|||||+.+|.+.. +++++|+|
T Consensus 3 ~~~~l~~~~~~~v~~~l~~~~~~~l~~--~~~i~i~~~Dl~~L~~~~wLND~vI~fy~~~l~~~~-------~~~~~f~s 73 (221)
T 1euv_A 3 LVPELNEKDDDQVQKALASRENTQLMN--RDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKST-------PNTVAFNS 73 (221)
T ss_dssp SSCCCCHHHHHHHHHHHTCSSCCEEEE--ETTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHHS-------TTEEECCT
T ss_pred cCCCCCHHHHHHHHHHhcCCCCeeeec--CCCeEEEHHHHhhhcCCCCCCHHHHHHHHHHHHhcC-------CCeEEEEc
Confidence 467999999999999999988899986 479999999999999999999999999999997642 57999999
Q ss_pred hhhhhhccCCCCCchhHHHHhhhccccccCcccCCceeeeeec-CcceEEEEEeccCCcceecccCCCC-CH---HHHHH
Q 009996 366 FFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHK-QIHWCLAVIDRKDKKFQYLDSLKGR-DK---KVLGD 440 (520)
Q Consensus 366 fFy~kL~~~~~~~~y~~VrRWtk~kkv~~dIfskD~IfIPIN~-~sHW~L~VId~~~k~I~~yDSLg~~-~~---~vl~~ 440 (520)
|||++|... +|..|++|++.++ .++|++++||||||. ++||+|+|||++.++|+|||||++. +. .++..
T Consensus 74 ~f~~~l~~~----~~~~v~rw~~~~~--~~~~~~~~i~iPin~~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~i~~~ 147 (221)
T 1euv_A 74 FFYTNLSER----GYQGVRRWMKRKK--TQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTD 147 (221)
T ss_dssp HHHHHHHHH----TGGGTTTTTGGGT--SCGGGCSEEEEEEEETTTEEEEEEEETTTTEEEEECSSCCSCCHHHHHHHHH
T ss_pred HHHHHhhhh----ccHHHHHHHHhcc--CCcccCCEEEEEEEcCCCeEEEEEEEcCCCEEEEEecCCCCCcchHHHHHHH
Confidence 999999876 7999999998543 579999999999998 5999999999999999999999864 43 46788
Q ss_pred HHHHHHHHHHhhcCCCCCCCCceeeccCCCCCCCCCCchHHHHHHHHHHHHcCCCCccCCCChHHHHHHHHHHHHhhc
Q 009996 441 LARYFVEEVRDKCGKDIDVSDWEQEFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMR 518 (520)
Q Consensus 441 L~~yL~~E~k~k~g~~~d~s~W~~~~v~~vPQQ~Ng~DCGVFvL~fae~lsrg~~l~FtQ~dMp~~R~rma~EIl~lr 518 (520)
|++||..+++.+.+. .|.+. ..++|||.||+|||||||+||++++++.++.|+|++|+.+|++|+.+|++.+
T Consensus 148 l~~~l~~e~~~~~~~-----~~~~~-~~~~PqQ~N~~DCGvfv~~~~~~~~~~~~l~f~~~d~~~~R~~i~~~Il~~~ 219 (221)
T 1euv_A 148 LQKYVMEESKHTIGE-----DFDLI-HLDCPQQPNGYDCGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLILTDA 219 (221)
T ss_dssp HHHHHHHHTTSSSCT-----TCEEE-EECCCCCSSSSTHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCC-----CceEe-ecCCCCCCCCcCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHhcc
Confidence 899998887766543 35543 3689999999999999999999999999999999999999999999999876
No 4
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.7e-42 Score=354.83 Aligned_cols=200 Identities=28% Similarity=0.483 Sum_probs=168.0
Q ss_pred CCCCeeechhhhcccCCCCccChHHHHHHHHHHHHHhhcCCcccccceeeehhhhhhhccCCCC------------Cchh
Q 009996 314 TETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKG------------YDFR 381 (520)
Q Consensus 314 ~~~~i~It~~DL~~L~~g~WLNDeVInfYl~lL~~r~~~~p~~~~r~~~FnSfFy~kL~~~~~~------------~~y~ 381 (520)
.++++.|+++||.||.+++||||+|||||+.||..... .....+++|+||||||++|...+.+ .+|.
T Consensus 29 ~k~~i~it~~Dl~~L~~~~wLND~IInFyl~~L~~e~~-~~~~~~r~h~FnSFFy~kL~~~~~~~~~~~~~~s~~~~~y~ 107 (323)
T 3eay_A 29 TKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKA-SDELVERSHIFSSFFYKCLTRKENNLTEDNPNLSMAQRRHK 107 (323)
T ss_dssp SSSCEEEEHHHHHTTSTTCCCCHHHHHHHHHHHHHHTS-CHHHHHTEEECCTHHHHHHSCC--------CCSCHHHHHHT
T ss_pred CCCceEEEHHHHHhhCCCCCcCHHHHHHHHHHHHhhhc-cccccCcEEEEchHHHHHHHhcccccccccccchhHHHHHH
Confidence 46899999999999999999999999999999964321 1123478999999999999875221 3589
Q ss_pred HHHHhhhccccccCcccCCceeeeeecCcceEEEEEeccCC---------------------------------------
Q 009996 382 AVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDK--------------------------------------- 422 (520)
Q Consensus 382 ~VrRWtk~kkv~~dIfskD~IfIPIN~~sHW~L~VId~~~k--------------------------------------- 422 (520)
+|+|||+ +++||++|+||||||.+.||+|+|||++..
T Consensus 108 ~VrrWtr----kvdlf~kD~I~IPIn~~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 183 (323)
T 3eay_A 108 RVRTWTR----HINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLS 183 (323)
T ss_dssp TSGGGGT----TCCGGGCSEEEEEEEETTEEEEEEEECTTCSSCBCC---------------------------------
T ss_pred HHHHHHh----hcccccCCEEEEecCCCCceEEEEEecCCcccccccccccccccccccccccccccccccccccccccc
Confidence 9999997 368999999999999999999999998742
Q ss_pred -----------------------cceecccCCCC-CHHHHHHHHHHHHHHHHhhcC--CCCCCCCceeeccCCCCCCCCC
Q 009996 423 -----------------------KFQYLDSLKGR-DKKVLGDLARYFVEEVRDKCG--KDIDVSDWEQEFVLDLPEQANG 476 (520)
Q Consensus 423 -----------------------~I~~yDSLg~~-~~~vl~~L~~yL~~E~k~k~g--~~~d~s~W~~~~v~~vPQQ~Ng 476 (520)
+|.|||||++. +..++..|+.||..|++++.+ .+++...|... ...+|||.||
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~YL~~E~~~k~~~~~~f~~~~~~~~-~~~~P~Q~N~ 262 (323)
T 3eay_A 184 LSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTHRQFSKTNMVDL-CPKVPKQDNS 262 (323)
T ss_dssp ----------------CCCCBCSEEEEECSSCCSSHHHHHHHHHHHHHHHHHHHHSSCCCCCTTTSCEE-CCBCCCCCST
T ss_pred cccccccccccccccccccCCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHhhcCCCcCCCHhHceec-cCCCCCcCCC
Confidence 58999999986 478999999999999998864 45666677654 4679999999
Q ss_pred CchHHHHHHHHHHHHcCCCCc----------cCCCChHHHHHHHHHHHHhhcc
Q 009996 477 FDCGMFMLKYVDFYSRGLGLC----------FDQSHMPYFRVRTAKEILRMRA 519 (520)
Q Consensus 477 ~DCGVFvL~fae~lsrg~~l~----------FtQ~dMp~~R~rma~EIl~lr~ 519 (520)
+|||||||+||++++.+.+++ |++..|...|..|...|++++.
T Consensus 263 ~DCGvfvl~~~e~~~~~~~~~f~~~~~~~~wf~~~~i~~kR~ei~~LI~~L~~ 315 (323)
T 3eay_A 263 SDCGVYLLQYVESFFKDPIVNFELPIHLEKWFPRHVIKTKREDIRELILKLHL 315 (323)
T ss_dssp TCHHHHHHHHHHHHHHSCCCCCCSSCBCTTSSCHHHHHTHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCCccccccccccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987654 5567899999999999998763
No 5
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=100.00 E-value=1.9e-39 Score=313.21 Aligned_cols=191 Identities=17% Similarity=0.236 Sum_probs=159.5
Q ss_pred ceEeecCCCCeeechhhhcccCCCCccChHHHHHHHHHHHHHhhcCCcccccceeee---hhhhhhhccCCCCCchhHHH
Q 009996 308 AVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFN---TFFYNKLACGNKGYDFRAVK 384 (520)
Q Consensus 308 ~vLvs~~~~~i~It~~DL~~L~~g~WLNDeVInfYl~lL~~r~~~~p~~~~r~~~Fn---SfFy~kL~~~~~~~~y~~Vr 384 (520)
.++++. +++.|+.+|+.+|.+++||||+|||||+++|.++.... ..+++++|+ ||||..+. +++.++
T Consensus 3 ~~~l~~--~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~--~~~~~~~~~p~~s~f~~~~~------~~~~v~ 72 (212)
T 2bkr_A 3 PVVLSY--MDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHD--SSDHVSFISPEVTQFIKCTS------NPAEIA 72 (212)
T ss_dssp CEEEEE--TTEEEEHHHHHTTSTTSCCBHHHHHHHHHHHHHTTTGG--GTTTEEEECHHHHHHHHHCC------CHHHHH
T ss_pred CEEEEE--CCEEEeHHHHhhcCCCCCcCHHHHHHHHHHHHHhhccC--CCCcEEEEChHHHHHHHhCC------CHHHHH
Confidence 355554 58999999999999999999999999999999976433 246899999 99996543 478899
Q ss_pred HhhhccccccCcccCCceeeeeec-------CcceEEEEEeccCCcceecccCCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 009996 385 RWTSAKKLGYGLIECDKIFVPIHK-------QIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDI 457 (520)
Q Consensus 385 RWtk~kkv~~dIfskD~IfIPIN~-------~sHW~L~VId~~~k~I~~yDSLg~~~~~vl~~L~~yL~~E~k~k~g~~~ 457 (520)
+|++. .+++++++||||||. ++||+|+||++++++|+|||||++.+......+..+|...+.....
T Consensus 73 ~~~~~----~~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~~~i~~~DSl~~~n~~~~~~l~~~l~~~l~~~~~--- 145 (212)
T 2bkr_A 73 MFLEP----LDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSNSVHAKQVAEKLEAFLGRKGD--- 145 (212)
T ss_dssp HHHGG----GTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTTTTHHHHHHHHHHHHHHHSCTTC---
T ss_pred HHhcc----cccccCCEEEEEEecCCCCCCCCCCeEEEEEEecCCeEEEEeCCCCCCHHHHHHHHHHHHHHhCCccc---
Confidence 99973 579999999999994 8999999999999999999999999887767777777665543321
Q ss_pred CCCCceeeccCCCCCCCCCCchHHHHHHHHHHHHcCC--------CCccCCCChHHHHHHHHHHHHhhcc
Q 009996 458 DVSDWEQEFVLDLPEQANGFDCGMFMLKYVDFYSRGL--------GLCFDQSHMPYFRVRTAKEILRMRA 519 (520)
Q Consensus 458 d~s~W~~~~v~~vPQQ~Ng~DCGVFvL~fae~lsrg~--------~l~FtQ~dMp~~R~rma~EIl~lr~ 519 (520)
.|.+. ..++|||.||+|||||||+||++++++. ...|++++|+.+|++|+..|++++.
T Consensus 146 ---~~~~~-~~~~PqQ~N~~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~lI~~L~~ 211 (212)
T 2bkr_A 146 ---KLAFV-EEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTESLLQLLTPAYITKKRGEWKDLIATLAK 211 (212)
T ss_dssp ---CCCEE-ECCCCCCSSSSTHHHHHHHHHHHHHHHHHSCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ---cceEe-ECCCCCCCCCCcHHHHHHHHHHHHHHHhhhcCcccccccCCHHHHHHHHHHHHHHHHHHhc
Confidence 34443 4689999999999999999999998875 1358999999999999999999864
No 6
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=99.98 E-value=1.7e-32 Score=260.88 Aligned_cols=169 Identities=21% Similarity=0.304 Sum_probs=124.4
Q ss_pred CCCccChHHHHHHHHHHHHHhhcCCcccccceeeehhhhhhhccCCCCCchhHHHHhhhccccccCccc-CCceeeeeec
Q 009996 330 PGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIE-CDKIFVPIHK 408 (520)
Q Consensus 330 ~g~WLNDeVInfYl~lL~~r~~~~p~~~~r~~~FnSfFy~kL~~~~~~~~y~~VrRWtk~kkv~~dIfs-kD~IfIPIN~ 408 (520)
+++||||+|||||+++|.++....+. ..++++|+++++..+... ...++..+.+|++. ++ +++||||||.
T Consensus 1 ~~~WLND~iI~fy~~~L~~~~~~~~~-~~~v~f~~p~~~~~l~~~-~~~~~~~~~~~~~~-------~~~~~~i~iPin~ 71 (186)
T 2oix_A 1 ATSWLLDGHLRAYTDDLARRLRGEPN-AHLLHFADSQVVTMLSSA-DPDQQARAQRLLAG-------DDIPPIVFLPINQ 71 (186)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTTTSTT-GGGEEECCHHHHHHTTCS-SHHHHHHHHHHHHS-------TTSCSEEEEEEEE
T ss_pred CCCCcChHHHHHHHHHHHHHhhhccC-cceEEEECHHHHHHHHhC-CHHHHHHHHHHccc-------ccccCEEEEEEeC
Confidence 47999999999999999998754432 245999997655444433 11246788888862 34 9999999998
Q ss_pred -CcceEEEEEeccCCcc---eecccCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCceeeccCCCCCCCCCCchHHHHH
Q 009996 409 -QIHWCLAVIDRKDKKF---QYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWEQEFVLDLPEQANGFDCGMFML 484 (520)
Q Consensus 409 -~sHW~L~VId~~~k~I---~~yDSLg~~~~~vl~~L~~yL~~E~k~k~g~~~d~s~W~~~~v~~vPQQ~Ng~DCGVFvL 484 (520)
++||+|+||++++++| +|||||++.+.. ...+...|.. ..+.+. ..+ ...++|||.||+|||||||
T Consensus 72 ~~~HWsLlvi~~~~~~~~~~~~~DSl~~~~~~-~~~l~~~l~~----~l~~~~----~~~-~~~~~PqQ~Ng~DCGvfv~ 141 (186)
T 2oix_A 72 PNAHWSLLVVDRRNKDAVAAYHYDSMAQKDPQ-QRYLADMAAY----HLGLDY----QQT-HEMPIAIQSDGYSAGDHVL 141 (186)
T ss_dssp TTTEEEEEEEECSSTTSCEEEEECCCSSCCHH-HHHHHHHHHH----HTTCCG----GGC-EEECBCCCC--CCHHHHHH
T ss_pred CCCccEEEEEECCCCeeeeeEEEcCCCCCCHH-HHHHHHHHHH----HhCCCc----ccc-ccCCCCCCCCCCCHHHHHH
Confidence 8999999999999999 999999997754 2333333332 223221 111 2468999999999999999
Q ss_pred HHHHHHHcCC-------CCccCCCChHHHHHHHHHHHHhh
Q 009996 485 KYVDFYSRGL-------GLCFDQSHMPYFRVRTAKEILRM 517 (520)
Q Consensus 485 ~fae~lsrg~-------~l~FtQ~dMp~~R~rma~EIl~l 517 (520)
+||++++++. ...|++++|..+|+.|...|.++
T Consensus 142 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~R~~i~~lI~~~ 181 (186)
T 2oix_A 142 TGIEVLAHRVLDGTFDYAGGRDLTDIEPDRGLIRDRLAQA 181 (186)
T ss_dssp HHHHHHHHHHHHTCTTSTTTTCBTTCCCCHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhcCccCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 9999998631 23588999999999999998765
No 7
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=96.39 E-value=0.021 Score=54.12 Aligned_cols=85 Identities=11% Similarity=0.140 Sum_probs=54.1
Q ss_pred CcceEEEEEeccCCcceecccCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCC-CceeeccCCCCCCCCCCchHHHHHHHH
Q 009996 409 QIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVS-DWEQEFVLDLPEQANGFDCGMFMLKYV 487 (520)
Q Consensus 409 ~sHW~L~VId~~~k~I~~yDSLg~~~~~vl~~L~~yL~~E~k~k~g~~~d~s-~W~~~~v~~vPQQ~Ng~DCGVFvL~fa 487 (520)
|.||.-...|+..+++|.||.+|-++.+..+.-.--....++ +....-..+ =.+.+...+.-|-+++--||+|.|.|+
T Consensus 52 GvHWiA~Aw~P~s~~~YmFDPfG~sd~~L~qiY~F~Y~~llk-RSAL~sspdRCv~LvkstqsVQcp~SaACGLFC~lFL 130 (204)
T 4ekf_A 52 GVHWMAFAWNPRSKTCYLFEPFGFSDQRLKQVYQFEYESLLR-RSAIASSPDRCITLEKSTQSVQGPNSAAAGLFCCMFL 130 (204)
T ss_dssp CCCEEEEEEETTTTEEEEECTBTTCSHHHHHHHHHHHHHHHH-HHCC--------EEEECCSBCSCTTCCCHHHHHHHHH
T ss_pred ceeEEEeEecCCcceEEEeCCCCCCHHHHHHHhhhhHHHHHH-HHhhcCCCCceeEEEeccccccCcCchhHHHHHHHHH
Confidence 789999999999999999999999987643221110111111 111100000 012333355667788899999999999
Q ss_pred HHHHcCC
Q 009996 488 DFYSRGL 494 (520)
Q Consensus 488 e~lsrg~ 494 (520)
.++....
T Consensus 131 ~aF~~~p 137 (204)
T 4ekf_A 131 HAFANWP 137 (204)
T ss_dssp HHHHHCT
T ss_pred HHHHhCC
Confidence 9998743
No 8
>2cxa_A Leucyl/phenylalanyl-tRNA-protein transferase; aminoacyl-tRNA, protein degradation, structural genomics, NPPSFA; HET: MSE; 1.60A {Escherichia coli} SCOP: d.108.1.6 PDB: 2dps_A 2dpt_A* 2z3o_A* 2z3k_A* 2z3l_A* 2z3m_A* 2z3n_A* 2z3p_A*
Probab=9.15 E-value=1.4e+02 Score=29.44 Aligned_cols=20 Identities=25% Similarity=0.607 Sum_probs=16.3
Q ss_pred CCCCccChHHHHHHHHHHHH
Q 009996 329 RPGAWLNDEVINVYLGLLKE 348 (520)
Q Consensus 329 ~~g~WLNDeVInfYl~lL~~ 348 (520)
.++.|+++++|++|.++-..
T Consensus 124 ~~gTWI~~ei~~aY~~LH~~ 143 (256)
T 2cxa_A 124 EEGTWITRGVVEAYHRLHEL 143 (256)
T ss_dssp --CTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHhC
Confidence 46899999999999998654
No 9
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=7.18 E-value=2.4e+02 Score=24.29 Aligned_cols=21 Identities=29% Similarity=0.233 Sum_probs=16.5
Q ss_pred CCCCCCCchHHHHHHHHHHHH
Q 009996 471 PEQANGFDCGMFMLKYVDFYS 491 (520)
Q Consensus 471 PQQ~Ng~DCGVFvL~fae~ls 491 (520)
-+|.+..|||+-++..+-.+.
T Consensus 9 ~~Q~~~~dcglacLa~i~~~~ 29 (156)
T 3k8u_A 9 VPQIDTRDCGPAVLASVAKHY 29 (156)
T ss_dssp CCCSSTTCHHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHHh
Confidence 357778999999998876654
No 10
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=7.08 E-value=3.7e+02 Score=22.71 Aligned_cols=32 Identities=13% Similarity=0.209 Sum_probs=25.5
Q ss_pred cccCCceeeeeecCcceEEEEEeccCCcceec
Q 009996 396 LIECDKIFVPIHKQIHWCLAVIDRKDKKFQYL 427 (520)
Q Consensus 396 IfskD~IfIPIN~~sHW~L~VId~~~k~I~~y 427 (520)
++..|++.+|...+..|.+++||.-.+.+..+
T Consensus 13 ~~~~D~~~~~~~~g~~yl~~~iD~~Sr~i~~~ 44 (162)
T 1cxq_A 13 IWQTDFTLEPRMAPRSWLAVTVDTASSAIVVT 44 (162)
T ss_dssp EEEEEEEECGGGTTSCEEEEEEETTTCCEEEE
T ss_pred EEEeeeeecccCCCCEEEEEEEEcCCCeEEEE
Confidence 55677777787778889999999988887665
Done!