Query 009997
Match_columns 520
No_of_seqs 447 out of 1659
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 17:36:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009997.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009997hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hst_B Protein RV2228C/MT2287; 99.8 6.1E-21 2.1E-25 170.4 12.2 132 58-195 3-135 (141)
2 3u3g_D Ribonuclease H, RNAse H 99.8 6.9E-21 2.3E-25 169.6 11.3 129 58-192 3-136 (140)
3 2ehg_A Ribonuclease HI; RNAse 99.8 2.6E-19 8.8E-24 161.7 11.3 132 58-195 1-136 (149)
4 1wd2_A Ariadne-1 protein homol 99.7 7.3E-18 2.5E-22 126.9 2.3 52 371-422 4-59 (60)
5 3h08_A RNH (ribonuclease H); R 99.6 2.4E-16 8.4E-21 141.6 8.0 126 57-193 3-144 (146)
6 2qkb_A Ribonuclease H1, HS-RNA 99.6 4.7E-16 1.6E-20 141.1 8.8 131 56-193 5-151 (154)
7 2kq2_A Ribonuclease H-related 99.6 4.4E-16 1.5E-20 140.2 8.0 129 55-196 3-140 (147)
8 1zbf_A Ribonuclease H-related 99.6 1.9E-15 6.6E-20 134.6 9.5 80 58-146 11-90 (142)
9 4htu_A Ribonuclease H, RNAse H 99.6 4.8E-15 1.7E-19 129.7 9.8 97 59-164 6-109 (134)
10 1wim_A KIAA0161 protein; ring 99.6 1.6E-15 5.6E-20 125.8 6.4 86 202-287 3-92 (94)
11 2lsn_A Reverse transcriptase; 99.6 8.8E-15 3E-19 133.8 11.3 126 57-191 6-161 (165)
12 1jl1_A Ribonuclease HI; RNAse 99.6 4.4E-15 1.5E-19 134.8 8.4 127 58-195 4-145 (155)
13 2e4l_A Ribonuclease HI, RNAse 99.6 5.1E-15 1.7E-19 134.9 8.8 126 57-193 5-145 (158)
14 3p1g_A Xenotropic murine leuke 99.5 1.4E-14 4.7E-19 132.6 9.5 130 52-195 17-158 (165)
15 1ril_A Ribonuclease H; hydrola 99.5 6E-15 2E-19 135.5 6.5 127 58-195 8-150 (166)
16 3qio_A GAG-POL polyprotein; RN 99.5 1E-14 3.5E-19 131.6 7.9 120 58-192 12-146 (150)
17 1mu2_A HIV-2 RT; HIV-2 reverse 99.3 5.3E-12 1.8E-16 137.4 8.5 116 57-190 435-554 (555)
18 2zd1_A Reverse transcriptase/r 99.2 3.1E-12 1.1E-16 139.3 5.6 116 57-190 438-557 (557)
19 2ct7_A Ring finger protein 31; 99.1 5.1E-12 1.7E-16 102.7 -1.8 74 269-356 3-80 (86)
20 2jmo_A Parkin; IBR, E3 ligase, 99.0 2.3E-11 7.7E-16 97.4 -1.7 69 267-348 2-75 (80)
21 4ap4_A E3 ubiquitin ligase RNF 98.7 6E-10 2E-14 97.5 -2.4 116 203-386 6-126 (133)
22 3hcs_A TNF receptor-associated 98.7 7.9E-09 2.7E-13 94.8 3.8 118 202-346 16-133 (170)
23 1rmd_A RAG1; V(D)J recombinati 98.4 1.8E-07 6.2E-12 80.0 5.5 81 204-305 23-103 (116)
24 2ct2_A Tripartite motif protei 98.4 3.4E-07 1.1E-11 74.0 5.6 59 202-266 13-73 (88)
25 2ecv_A Tripartite motif-contai 98.4 2.9E-07 9.9E-12 73.7 4.8 59 201-264 16-74 (85)
26 2egp_A Tripartite motif-contai 98.4 7.2E-08 2.5E-12 76.4 1.2 60 202-265 10-69 (79)
27 3hct_A TNF receptor-associated 98.4 5.4E-07 1.8E-11 77.4 6.7 83 202-306 16-98 (118)
28 2ecw_A Tripartite motif-contai 98.4 4.5E-07 1.5E-11 72.6 5.7 59 201-264 16-74 (85)
29 1jm7_A BRCA1, breast cancer ty 98.3 5.7E-07 1.9E-11 76.2 5.9 70 204-281 21-91 (112)
30 2djb_A Polycomb group ring fin 98.3 6E-07 2.1E-11 69.8 5.3 53 201-264 12-65 (72)
31 2ecm_A Ring finger and CHY zin 98.3 5.3E-07 1.8E-11 66.0 4.6 50 202-260 3-54 (55)
32 2ecy_A TNF receptor-associated 98.3 4.7E-07 1.6E-11 69.2 4.5 52 202-263 13-64 (66)
33 2ysl_A Tripartite motif-contai 98.3 3.3E-07 1.1E-11 71.4 3.3 54 202-263 18-71 (73)
34 2ysj_A Tripartite motif-contai 98.2 1.5E-06 5.2E-11 65.6 6.1 45 202-252 18-62 (63)
35 1g25_A CDK-activating kinase a 98.2 3.8E-07 1.3E-11 69.5 2.7 56 204-267 3-61 (65)
36 2d8t_A Dactylidin, ring finger 98.2 6.1E-07 2.1E-11 69.6 3.3 55 201-266 12-66 (71)
37 2xeu_A Ring finger protein 4; 98.2 6E-07 2E-11 67.8 2.6 55 203-266 2-61 (64)
38 3knv_A TNF receptor-associated 98.2 1.6E-07 5.6E-12 83.3 -0.7 89 202-305 29-119 (141)
39 3ng2_A RNF4, snurf, ring finge 98.1 7.8E-07 2.7E-11 68.8 2.5 56 202-266 8-68 (71)
40 2kiz_A E3 ubiquitin-protein li 98.1 3.3E-06 1.1E-10 64.9 6.1 51 201-260 11-62 (69)
41 2csy_A Zinc finger protein 183 98.1 2.6E-06 8.7E-11 67.8 5.5 49 201-260 12-60 (81)
42 3ztg_A E3 ubiquitin-protein li 98.1 1.4E-06 4.7E-11 71.2 3.8 49 202-259 11-60 (92)
43 3lrq_A E3 ubiquitin-protein li 98.1 1.8E-06 6.3E-11 71.7 4.7 54 203-266 21-75 (100)
44 1e4u_A Transcriptional repress 98.1 1.7E-06 5.8E-11 68.5 4.2 53 202-262 9-63 (78)
45 2yur_A Retinoblastoma-binding 98.1 3.1E-06 1E-10 66.2 5.6 50 201-259 12-62 (74)
46 1t1h_A Gspef-atpub14, armadill 98.1 1E-06 3.5E-11 69.6 2.9 50 203-262 7-56 (78)
47 2ea6_A Ring finger protein 4; 98.1 1.6E-06 5.3E-11 66.5 3.7 51 201-260 12-67 (69)
48 2ecj_A Tripartite motif-contai 98.1 4E-06 1.4E-10 61.9 4.8 45 202-252 13-57 (58)
49 2yu4_A E3 SUMO-protein ligase 98.1 4.8E-06 1.6E-10 68.4 5.7 58 202-262 5-64 (94)
50 2ep4_A Ring finger protein 24; 98.0 5.4E-06 1.9E-10 64.6 5.3 50 202-260 13-63 (74)
51 2ect_A Ring finger protein 126 98.0 2.2E-06 7.4E-11 67.7 2.8 54 201-263 12-66 (78)
52 3fl2_A E3 ubiquitin-protein li 98.0 4E-06 1.4E-10 72.5 4.3 48 204-261 52-99 (124)
53 1x4j_A Ring finger protein 38; 98.0 4.4E-06 1.5E-10 65.4 3.9 51 202-261 21-72 (75)
54 2y43_A E3 ubiquitin-protein li 98.0 5.5E-06 1.9E-10 68.5 4.5 49 204-263 22-71 (99)
55 3l11_A E3 ubiquitin-protein li 98.0 1.3E-06 4.4E-11 74.5 0.5 50 202-261 13-62 (115)
56 1bor_A Transcription factor PM 98.0 1.9E-06 6.5E-11 63.6 1.4 46 202-261 4-49 (56)
57 4ayc_A E3 ubiquitin-protein li 97.9 3.6E-06 1.2E-10 74.2 2.4 46 204-260 53-98 (138)
58 1iym_A EL5; ring-H2 finger, ub 97.9 4.5E-06 1.5E-10 61.0 2.4 49 203-260 4-54 (55)
59 2ecn_A Ring finger protein 141 97.9 2E-06 6.8E-11 66.3 -0.0 48 202-261 13-60 (70)
60 2l0b_A E3 ubiquitin-protein li 97.8 1.1E-05 3.8E-10 65.7 4.3 51 202-261 38-89 (91)
61 2ckl_A Polycomb group ring fin 97.8 6.7E-06 2.3E-10 69.2 3.1 48 203-261 14-62 (108)
62 1z6u_A NP95-like ring finger p 97.8 1.3E-05 4.4E-10 71.7 4.8 49 204-262 78-126 (150)
63 2kr4_A Ubiquitin conjugation f 97.8 3.9E-05 1.3E-09 61.7 7.0 49 203-262 13-61 (85)
64 1chc_A Equine herpes virus-1 r 97.8 1.3E-05 4.4E-10 61.3 3.6 48 203-260 4-51 (68)
65 1v87_A Deltex protein 2; ring- 97.7 3.8E-05 1.3E-09 65.1 5.6 53 204-260 25-93 (114)
66 1jm7_B BARD1, BRCA1-associated 97.7 1.1E-05 3.7E-10 69.0 2.2 45 204-261 22-67 (117)
67 3htk_C E3 SUMO-protein ligase 97.7 3E-05 1E-09 74.7 4.6 56 201-263 178-234 (267)
68 2kre_A Ubiquitin conjugation f 97.6 2.2E-05 7.5E-10 65.2 2.0 49 203-262 28-76 (100)
69 1wgm_A Ubiquitin conjugation f 97.6 4.8E-05 1.6E-09 62.9 3.9 49 203-262 21-70 (98)
70 2ckl_B Ubiquitin ligase protei 97.5 4.5E-05 1.5E-09 69.2 4.0 48 203-260 53-101 (165)
71 2ecl_A Ring-box protein 2; RNF 97.5 3.1E-05 1.1E-09 61.6 2.1 51 202-261 13-76 (81)
72 2ct7_A Ring finger protein 31; 97.5 3.1E-05 1.1E-09 62.4 1.6 47 372-418 24-71 (86)
73 4ic3_A E3 ubiquitin-protein li 97.4 4.9E-05 1.7E-09 59.3 2.1 42 204-260 24-66 (74)
74 2c2l_A CHIP, carboxy terminus 97.4 0.00014 4.7E-09 71.3 5.3 51 202-262 206-256 (281)
75 2ecg_A Baculoviral IAP repeat- 97.3 0.0001 3.4E-09 57.6 2.7 43 204-261 25-68 (75)
76 2vje_B MDM4 protein; proto-onc 97.3 0.00012 4.1E-09 55.2 2.9 50 202-260 5-55 (63)
77 2d8s_A Cellular modulator of i 97.3 0.00029 1E-08 55.8 5.2 54 201-261 12-70 (80)
78 2vje_A E3 ubiquitin-protein li 97.3 0.00012 4E-09 55.5 2.6 49 203-260 7-56 (64)
79 2f42_A STIP1 homology and U-bo 97.3 0.00072 2.4E-08 61.9 8.3 51 202-262 104-154 (179)
80 4ap4_A E3 ubiquitin ligase RNF 97.2 0.00011 3.7E-09 63.6 2.3 56 202-266 70-130 (133)
81 3dpl_R Ring-box protein 1; ubi 97.2 0.00028 9.5E-09 59.1 4.1 49 203-260 36-100 (106)
82 2ea5_A Cell growth regulator w 97.1 0.00045 1.5E-08 52.9 4.3 46 201-261 12-58 (68)
83 2y1n_A E3 ubiquitin-protein li 97.1 0.00039 1.3E-08 71.1 4.8 48 204-261 332-379 (389)
84 2jmo_A Parkin; IBR, E3 ligase, 97.0 0.00022 7.5E-09 56.5 1.8 38 373-410 25-70 (80)
85 2yho_A E3 ubiquitin-protein li 96.9 0.00026 8.8E-09 56.0 1.4 43 204-261 18-61 (79)
86 4a0k_B E3 ubiquitin-protein li 96.5 0.00048 1.6E-08 58.6 0.4 48 204-260 48-111 (117)
87 3t6p_A Baculoviral IAP repeat- 95.9 0.0016 5.5E-08 66.0 0.9 42 204-260 295-337 (345)
88 2ct0_A Non-SMC element 1 homol 95.8 0.0053 1.8E-07 47.7 2.9 50 202-260 13-63 (74)
89 3k1l_B Fancl; UBC, ring, RWD, 94.9 0.028 9.6E-07 56.1 5.7 58 202-261 306-373 (381)
90 2bay_A PRE-mRNA splicing facto 94.9 0.017 6E-07 42.9 3.1 50 204-264 3-53 (61)
91 1vyx_A ORF K3, K3RING; zinc-bi 94.4 0.055 1.9E-06 40.0 5.0 50 202-260 4-58 (60)
92 3vk6_A E3 ubiquitin-protein li 93.5 0.056 1.9E-06 43.9 3.7 45 206-260 3-48 (101)
93 2cs3_A Protein C14ORF4, MY039 93.3 0.29 1E-05 37.7 7.1 50 201-252 12-63 (93)
94 1wd2_A Ariadne-1 protein homol 92.8 0.075 2.6E-06 39.3 3.2 39 289-341 5-45 (60)
95 2jun_A Midline-1; B-BOX, TRIM, 90.5 0.14 4.8E-06 41.7 2.8 33 204-236 3-36 (101)
96 1joc_A EEA1, early endosomal a 85.7 2.3 7.7E-05 36.2 7.4 35 202-236 67-103 (125)
97 3nw0_A Non-structural maintena 83.7 0.73 2.5E-05 43.9 3.8 51 203-262 179-230 (238)
98 2jrp_A Putative cytoplasmic pr 82.1 0.53 1.8E-05 36.7 1.7 28 375-410 33-63 (81)
99 2ysl_A Tripartite motif-contai 81.4 0.53 1.8E-05 35.4 1.5 32 374-410 21-52 (73)
100 2d8t_A Dactylidin, ring finger 80.7 0.49 1.7E-05 35.6 1.0 41 374-421 16-56 (71)
101 2ysj_A Tripartite motif-contai 80.6 0.39 1.3E-05 35.2 0.4 32 374-410 21-52 (63)
102 4ayc_A E3 ubiquitin-protein li 79.8 0.56 1.9E-05 40.5 1.3 36 374-414 54-89 (138)
103 1vq8_Z 50S ribosomal protein L 79.7 0.79 2.7E-05 36.1 1.9 28 374-401 28-56 (83)
104 1iym_A EL5; ring-H2 finger, ub 79.6 0.5 1.7E-05 33.4 0.7 43 374-420 6-49 (55)
105 1pft_A TFIIB, PFTFIIBN; N-term 79.4 1.6 5.6E-05 30.5 3.4 28 373-400 5-34 (50)
106 2jr6_A UPF0434 protein NMA0874 78.9 1.1 3.7E-05 33.9 2.4 28 373-400 8-36 (68)
107 2yur_A Retinoblastoma-binding 78.8 0.4 1.4E-05 36.5 -0.0 32 374-410 16-48 (74)
108 2ecn_A Ring finger protein 141 78.6 0.68 2.3E-05 34.6 1.2 35 374-414 16-50 (70)
109 2ckl_A Polycomb group ring fin 77.6 0.61 2.1E-05 38.3 0.7 34 374-412 16-50 (108)
110 3lrq_A E3 ubiquitin-protein li 77.3 0.51 1.8E-05 38.3 0.2 32 374-410 23-55 (100)
111 1e4u_A Transcriptional repress 77.1 0.62 2.1E-05 36.1 0.6 35 374-409 12-46 (78)
112 2y43_A E3 ubiquitin-protein li 76.8 0.6 2E-05 37.6 0.5 36 374-414 23-59 (99)
113 2egp_A Tripartite motif-contai 76.6 0.75 2.6E-05 35.1 1.0 33 374-411 13-45 (79)
114 2k4x_A 30S ribosomal protein S 76.2 1 3.5E-05 32.5 1.5 27 374-400 19-46 (55)
115 2ecj_A Tripartite motif-contai 75.2 0.62 2.1E-05 33.2 0.1 31 374-409 16-46 (58)
116 3ztg_A E3 ubiquitin-protein li 74.6 0.47 1.6E-05 37.7 -0.8 31 374-409 14-45 (92)
117 2jrp_A Putative cytoplasmic pr 73.8 2.2 7.4E-05 33.3 2.9 44 374-419 3-56 (81)
118 2ect_A Ring finger protein 126 72.9 1.3 4.5E-05 33.7 1.5 38 374-413 16-53 (78)
119 1wfl_A Zinc finger protein 216 72.7 1.3 4.5E-05 33.8 1.4 30 374-407 26-55 (74)
120 1wfh_A Zinc finger (AN1-like) 72.4 1.6 5.5E-05 32.4 1.7 30 374-407 16-45 (64)
121 3fl2_A E3 ubiquitin-protein li 72.2 0.85 2.9E-05 38.4 0.3 32 374-410 53-84 (124)
122 3j20_Y 30S ribosomal protein S 72.2 1.8 6.1E-05 30.5 1.9 28 373-400 19-47 (50)
123 3ng2_A RNF4, snurf, ring finge 72.0 0.45 1.5E-05 35.6 -1.4 39 374-412 11-51 (71)
124 2l0b_A E3 ubiquitin-protein li 71.8 0.88 3E-05 36.1 0.3 39 374-414 41-79 (91)
125 2ct2_A Tripartite motif protei 71.7 0.78 2.7E-05 35.8 -0.1 36 374-410 16-51 (88)
126 2djb_A Polycomb group ring fin 71.5 0.55 1.9E-05 35.4 -1.0 32 374-410 16-48 (72)
127 2ecy_A TNF receptor-associated 70.2 1 3.5E-05 33.1 0.3 32 374-410 16-47 (66)
128 2ep4_A Ring finger protein 24; 70.0 0.66 2.2E-05 35.1 -0.9 37 374-412 16-52 (74)
129 2ckl_B Ubiquitin ligase protei 69.8 0.94 3.2E-05 40.2 0.0 32 374-410 55-87 (165)
130 1z60_A TFIIH basal transcripti 69.1 1.2 4E-05 32.7 0.4 21 323-343 31-51 (59)
131 2csy_A Zinc finger protein 183 68.9 0.75 2.6E-05 35.5 -0.7 33 374-411 16-48 (81)
132 1wg2_A Zinc finger (AN1-like) 67.9 2.1 7E-05 31.8 1.5 30 374-407 16-45 (64)
133 1t1h_A Gspef-atpub14, armadill 67.7 1.4 4.9E-05 33.5 0.7 33 374-411 9-41 (78)
134 2d8v_A Zinc finger FYVE domain 67.7 3 0.0001 31.0 2.3 35 201-238 5-40 (67)
135 2kiz_A E3 ubiquitin-protein li 67.4 1.1 3.6E-05 33.4 -0.2 38 374-413 15-52 (69)
136 2xeu_A Ring finger protein 4; 67.1 0.73 2.5E-05 33.5 -1.1 38 374-411 4-43 (64)
137 1wff_A Riken cDNA 2810002D23 p 66.3 2.6 8.9E-05 33.1 1.9 32 373-407 25-56 (85)
138 2jne_A Hypothetical protein YF 65.6 4.6 0.00016 32.4 3.2 34 374-409 33-72 (101)
139 3l11_A E3 ubiquitin-protein li 64.4 2.7 9.1E-05 34.7 1.8 43 374-422 16-58 (115)
140 1wfp_A Zinc finger (AN1-like) 64.0 2.7 9.3E-05 32.0 1.6 30 374-407 26-55 (74)
141 2ecw_A Tripartite motif-contai 63.8 1.5 5.3E-05 33.6 0.2 31 374-409 20-50 (85)
142 2ea6_A Ring finger protein 4; 63.7 0.83 2.9E-05 33.7 -1.4 37 374-410 16-54 (69)
143 1chc_A Equine herpes virus-1 r 62.2 1.1 3.8E-05 33.1 -0.9 33 374-410 6-38 (68)
144 2fiy_A Protein FDHE homolog; F 61.4 4.8 0.00016 39.7 3.3 19 106-124 43-61 (309)
145 3knv_A TNF receptor-associated 61.4 1.6 5.6E-05 37.8 -0.1 32 374-410 32-63 (141)
146 1x4j_A Ring finger protein 38; 61.0 1.5 5.2E-05 33.1 -0.3 36 374-411 24-59 (75)
147 2hf1_A Tetraacyldisaccharide-1 60.9 4.7 0.00016 30.3 2.4 27 374-400 9-36 (68)
148 3v43_A Histone acetyltransfera 60.7 24 0.00083 28.9 7.1 48 203-252 4-60 (112)
149 2ecl_A Ring-box protein 2; RNF 60.6 2.8 9.5E-05 32.4 1.1 43 375-420 28-70 (81)
150 2js4_A UPF0434 protein BB2007; 60.3 5.2 0.00018 30.3 2.5 28 373-400 8-36 (70)
151 2ecv_A Tripartite motif-contai 59.6 1.7 5.9E-05 33.3 -0.3 31 374-409 20-50 (85)
152 1g25_A CDK-activating kinase a 59.6 2 6.7E-05 31.5 0.1 34 374-408 4-38 (65)
153 1jm7_B BARD1, BRCA1-associated 59.5 7.1 0.00024 32.2 3.6 32 374-410 23-55 (117)
154 2pk7_A Uncharacterized protein 58.9 5.5 0.00019 30.1 2.4 27 374-400 9-36 (69)
155 2ko5_A Ring finger protein Z; 58.8 2 7E-05 34.2 0.0 47 202-261 26-73 (99)
156 3vk6_A E3 ubiquitin-protein li 58.8 2.4 8.3E-05 34.3 0.5 20 375-394 3-25 (101)
157 3hct_A TNF receptor-associated 58.5 2 6.7E-05 35.8 -0.1 32 374-410 19-50 (118)
158 3h0g_I DNA-directed RNA polyme 56.9 5.1 0.00017 33.3 2.2 28 373-400 4-36 (113)
159 1twf_I B12.6, DNA-directed RNA 54.6 6.3 0.00022 33.2 2.4 28 373-400 4-36 (122)
160 1jm7_A BRCA1, breast cancer ty 54.2 2.4 8.1E-05 34.6 -0.3 32 374-410 22-53 (112)
161 3qt1_I DNA-directed RNA polyme 53.8 4.8 0.00017 34.5 1.6 30 371-400 22-56 (133)
162 2jny_A Uncharacterized BCR; st 52.5 7.9 0.00027 29.0 2.4 28 373-400 10-38 (67)
163 4a0k_B E3 ubiquitin-protein li 51.0 3.2 0.00011 34.8 0.0 40 375-414 61-102 (117)
164 1v87_A Deltex protein 2; ring- 49.2 5.9 0.0002 32.4 1.4 16 325-340 58-73 (114)
165 1rmd_A RAG1; V(D)J recombinati 48.0 4.1 0.00014 33.6 0.2 32 374-410 24-55 (116)
166 3hcs_A TNF receptor-associated 47.8 3.7 0.00013 36.4 -0.1 31 374-409 19-49 (170)
167 2kpi_A Uncharacterized protein 47.8 11 0.00039 27.0 2.5 26 373-400 10-38 (56)
168 3dpl_R Ring-box protein 1; ubi 47.2 5.4 0.00018 32.7 0.8 31 387-419 64-94 (106)
169 2akl_A PHNA-like protein PA012 46.6 8.8 0.0003 32.5 2.0 27 373-400 27-54 (138)
170 1wii_A Hypothetical UPF0222 pr 45.9 9.6 0.00033 29.9 2.0 27 374-400 24-57 (85)
171 1k81_A EIF-2-beta, probable tr 45.7 12 0.00039 24.4 2.1 25 375-399 2-30 (36)
172 1z6u_A NP95-like ring finger p 44.8 4.9 0.00017 35.0 0.2 32 374-410 79-110 (150)
173 1twf_L ABC10-alpha, DNA-direct 43.8 5.9 0.0002 30.0 0.5 25 373-398 28-53 (70)
174 3u5c_f 40S ribosomal protein S 42.8 11 0.00037 33.0 2.1 29 374-402 119-150 (152)
175 1wfe_A Riken cDNA 2310008M20 p 42.4 25 0.00085 27.6 3.9 41 289-348 24-64 (86)
176 2k5c_A Uncharacterized protein 42.3 10 0.00036 29.2 1.6 25 248-274 9-34 (95)
177 2xzm_9 RPS31E; ribosome, trans 42.1 12 0.00042 34.0 2.4 28 374-402 114-143 (189)
178 3m7n_A Putative uncharacterize 41.8 11 0.00038 33.8 2.1 24 374-399 141-165 (179)
179 1dl6_A Transcription factor II 40.8 18 0.00063 26.0 2.7 25 374-398 12-38 (58)
180 1weo_A Cellulose synthase, cat 38.7 8.6 0.00029 30.3 0.7 19 372-390 57-75 (93)
181 2y1n_A E3 ubiquitin-protein li 36.6 16 0.00054 37.1 2.5 33 373-410 332-364 (389)
182 2lbm_A Transcriptional regulat 36.2 84 0.0029 27.0 6.7 50 201-257 60-116 (142)
183 4ic3_A E3 ubiquitin-protein li 35.8 28 0.00095 26.0 3.2 30 374-408 25-55 (74)
184 1x4v_A Hypothetical protein LO 33.8 12 0.00042 27.6 0.8 40 290-348 12-51 (63)
185 1zbd_B Rabphilin-3A; G protein 33.3 18 0.0006 31.0 1.8 32 203-234 54-88 (134)
186 3nyb_B Protein AIR2; polya RNA 33.0 40 0.0014 26.2 3.7 60 330-421 5-66 (83)
187 1weo_A Cellulose synthase, cat 33.0 70 0.0024 25.2 5.0 49 203-259 15-68 (93)
188 2hu9_A MERP, mercuric transpor 32.5 46 0.0016 28.2 4.3 44 249-304 3-49 (130)
189 3t7l_A Zinc finger FYVE domain 31.9 30 0.001 27.2 2.9 36 202-237 18-55 (90)
190 2f9y_B Acetyl-coenzyme A carbo 31.6 8.4 0.00029 37.8 -0.5 33 370-402 21-55 (304)
191 1z60_A TFIIH basal transcripti 30.9 24 0.00082 25.6 2.0 29 205-233 16-45 (59)
192 2o35_A Hypothetical protein DU 30.4 24 0.00083 28.3 2.0 17 227-243 42-58 (105)
193 3a1b_A DNA (cytosine-5)-methyl 30.3 32 0.0011 30.3 3.0 37 199-238 74-113 (159)
194 1dvp_A HRS, hepatocyte growth 29.8 23 0.0008 32.7 2.3 33 374-408 162-195 (220)
195 1z2q_A LM5-1; membrane protein 28.6 28 0.00095 27.0 2.2 36 201-236 18-55 (84)
196 2apo_B Ribosome biogenesis pro 28.3 46 0.0016 24.2 3.1 36 372-424 5-40 (60)
197 3h0g_L DNA-directed RNA polyme 27.8 19 0.00064 26.6 0.9 28 372-400 20-48 (63)
198 3zyq_A Hepatocyte growth facto 27.1 1.2E+02 0.0042 27.9 6.8 33 204-236 164-198 (226)
199 3fyb_A Protein of unknown func 27.0 23 0.00078 28.4 1.3 17 227-243 41-57 (104)
200 2yw8_A RUN and FYVE domain-con 27.0 28 0.00096 26.8 1.9 35 202-236 17-53 (82)
201 3u5c_f 40S ribosomal protein S 25.5 27 0.00091 30.5 1.7 32 290-335 118-151 (152)
202 1wfk_A Zinc finger, FYVE domai 25.0 39 0.0013 26.4 2.4 35 202-236 7-43 (88)
203 1x4w_A Hypothetical protein FL 25.0 19 0.00063 26.9 0.5 33 374-407 16-48 (67)
204 3lqh_A Histone-lysine N-methyl 24.8 19 0.00067 32.4 0.7 71 205-278 3-82 (183)
205 3zyq_A Hepatocyte growth facto 24.1 34 0.0012 31.8 2.3 33 374-408 165-198 (226)
206 3htk_C E3 SUMO-protein ligase 24.0 25 0.00087 33.6 1.3 41 374-419 182-223 (267)
207 1fre_A Nuclear factor XNF7; zi 23.6 68 0.0023 20.7 3.1 24 322-345 14-38 (42)
208 3qt1_I DNA-directed RNA polyme 23.2 42 0.0014 28.6 2.4 36 287-332 21-56 (133)
209 1vq8_Z 50S ribosomal protein L 23.0 45 0.0015 25.9 2.4 33 287-333 24-56 (83)
210 1x4u_A Zinc finger, FYVE domai 22.8 35 0.0012 26.3 1.7 34 202-235 12-47 (84)
211 2xzf_A Formamidopyrimidine-DNA 22.6 34 0.0012 32.8 2.0 21 374-394 243-265 (271)
212 1gh9_A 8.3 kDa protein (gene M 22.5 40 0.0014 25.4 1.9 15 374-389 5-19 (71)
213 1wys_A Riken cDNA 2310008M20 p 22.4 58 0.002 24.8 2.8 27 323-351 30-56 (75)
214 3u6p_A Formamidopyrimidine-DNA 22.4 35 0.0012 32.8 2.0 21 374-394 246-268 (273)
215 3r8n_K 30S ribosomal protein S 22.1 1.5E+02 0.0052 24.4 5.6 51 83-133 20-74 (117)
216 1ee8_A MUTM (FPG) protein; bet 22.1 38 0.0013 32.3 2.2 13 374-386 236-248 (266)
217 2zet_C Melanophilin; complex, 21.9 38 0.0013 29.6 1.9 27 206-232 70-99 (153)
218 2k16_A Transcription initiatio 21.8 64 0.0022 24.1 3.0 34 202-235 16-50 (75)
219 1vfy_A Phosphatidylinositol-3- 21.8 37 0.0013 25.5 1.6 32 205-236 12-45 (73)
220 1k82_A Formamidopyrimidine-DNA 21.6 37 0.0013 32.5 2.0 21 374-394 241-263 (268)
221 1nee_A EIF-2-beta, probable tr 21.3 38 0.0013 29.0 1.8 26 374-399 103-132 (138)
222 1k3x_A Endonuclease VIII; hydr 21.2 38 0.0013 32.3 2.0 21 374-394 235-257 (262)
223 2ri7_A Nucleosome-remodeling f 20.7 32 0.0011 30.3 1.3 51 202-257 6-58 (174)
224 2c2l_A CHIP, carboxy terminus 20.5 21 0.00071 33.8 -0.1 32 374-410 209-240 (281)
225 1odh_A MGCM1; transcription fa 20.1 39 0.0013 29.6 1.5 19 374-398 111-131 (174)
No 1
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.84 E-value=6.1e-21 Score=170.38 Aligned_cols=132 Identities=23% Similarity=0.255 Sum_probs=120.0
Q ss_pred eEEEEeecccccccCCCCCcccceEEEEeecC-CCceEEEeecccccchhhHHHHHHHHHHHHHHHHcCcceeeeecccH
Q 009997 58 SVKMFFKGMSITEVGESSSGFSGIGVVMERSF-NIPIMQVQKKLDFFVEESVADYLALMDGLITAVQNKIRCVYAFTDSE 136 (520)
Q Consensus 58 ~~~~~fdG~~~~~~~~~n~~~ag~g~~i~~~~-~~~~~~~~~~~~~~~tnn~AE~~ALi~~l~~a~~~~i~~v~i~~Dse 136 (520)
.++|||||+++ + |||++|+|++|.+++ |..+...+..++.. |||.||+.|++.||..+..++..+|.|++||+
T Consensus 3 ~~~iy~DGs~~---~--~~g~~g~G~v~~~~~~~~~~~~~~~~~~~~-tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~ 76 (141)
T 3hst_B 3 KVVIEADGGSR---G--NPGPAGYGAVVWTADHSTVLAESKQAIGRA-TNNVAEYRGLIAGLDDAVKLGATEAAVLMDSK 76 (141)
T ss_dssp EEEEEEEEEES---S--SSEEEEEEEEEEETTSCSEEEEEEEEEEEE-CHHHHHHHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred EEEEEEecCCC---C--CCCCcEEEEEEEeCCCCcEEEeeeccCCCC-chHHHHHHHHHHHHHHHHHCCCceEEEEeChH
Confidence 58999999999 7 899999999999986 56656777777644 99999999999999999999999999999999
Q ss_pred HHHHHhhhhhhcchhHHHHHHHHHHHHhhhhhhHHhhcccccccccHHHHHHHhhccCC
Q 009997 137 LLYDQITREEKLDIPLLVALRQRILEYTSNLEAFVLKLVPSIELERPLRLAQIAVGIVS 195 (520)
Q Consensus 137 lv~~ql~g~~~~~~~~L~~l~~ril~l~~~f~~~~l~lvpr~~~~~a~klA~~Ai~~~~ 195 (520)
++++++++.|+++++.+..+.+++..+.++|..+.+.||++..|+.||+||+.++....
T Consensus 77 ~vv~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~~~N~~AD~LA~~a~~~~~ 135 (141)
T 3hst_B 77 LVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADRLANDAMDAAA 135 (141)
T ss_dssp HHHHHHTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCCcccHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999876543
No 2
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.84 E-value=6.9e-21 Score=169.57 Aligned_cols=129 Identities=22% Similarity=0.247 Sum_probs=119.9
Q ss_pred eEEEEeecccccccCCCCCcccceEEEEeecCCCceEEEeecccccchhhHHHHHHHHHHHHHHHHcCcc----eeeeec
Q 009997 58 SVKMFFKGMSITEVGESSSGFSGIGVVMERSFNIPIMQVQKKLDFFVEESVADYLALMDGLITAVQNKIR----CVYAFT 133 (520)
Q Consensus 58 ~~~~~fdG~~~~~~~~~n~~~ag~g~~i~~~~~~~~~~~~~~~~~~~tnn~AE~~ALi~~l~~a~~~~i~----~v~i~~ 133 (520)
.++|||||+++ + |||.+|+|++|.+++|..+...+..++.. |||.||+.|++.||..|...+.+ +|.|++
T Consensus 3 ~~~iy~DGs~~---~--n~g~~G~G~v~~~~~g~~~~~~~~~~~~~-tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~t 76 (140)
T 3u3g_D 3 KIIIYTDGGAR---G--NPGPAGIGVVITDEKGNTLHESSAYIGET-TNNVAEYEALIRALEDLQMFGDKLVDMEVEVRM 76 (140)
T ss_dssp EEEEEEEEEES---S--TTEEEEEEEEEECTTSCEEEEEEEEEEEE-CHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEE
T ss_pred eEEEEEecCCC---C--CCCCcEEEEEEEeCCCCEEEEEEeeCCCC-chHHHHHHHHHHHHHHHHHcCCCCCCceEEEEe
Confidence 58999999999 7 89999999999998888877888888765 99999999999999999999999 999999
Q ss_pred ccHHHHHHhhhhhhcchhHHHHHHHHHHHH-hhhhhhHHhhcccccccccHHHHHHHhhc
Q 009997 134 DSELLYDQITREEKLDIPLLVALRQRILEY-TSNLEAFVLKLVPSIELERPLRLAQIAVG 192 (520)
Q Consensus 134 Dselv~~ql~g~~~~~~~~L~~l~~ril~l-~~~f~~~~l~lvpr~~~~~a~klA~~Ai~ 192 (520)
||+++++++++.|+++++.+..+.+++..+ .+.|..+.+.|||+..|+.||+||+.++.
T Consensus 77 DS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~~~N~~AD~LA~~a~~ 136 (140)
T 3u3g_D 77 DSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPREKNARADELVNEAID 136 (140)
T ss_dssp SCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCGGGGHHHHHHHHHHHH
T ss_pred ChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCchhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999 88888999999999999999999998864
No 3
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.79 E-value=2.6e-19 Score=161.69 Aligned_cols=132 Identities=23% Similarity=0.242 Sum_probs=115.8
Q ss_pred eEEEEeecccccccCCCCCcccce-EEEEeecCCCceEEEeeccc---ccchhhHHHHHHHHHHHHHHHHcCcceeeeec
Q 009997 58 SVKMFFKGMSITEVGESSSGFSGI-GVVMERSFNIPIMQVQKKLD---FFVEESVADYLALMDGLITAVQNKIRCVYAFT 133 (520)
Q Consensus 58 ~~~~~fdG~~~~~~~~~n~~~ag~-g~~i~~~~~~~~~~~~~~~~---~~~tnn~AE~~ALi~~l~~a~~~~i~~v~i~~ 133 (520)
+|+|||||+++. .|||++|+ |++|.+ +|..+...+..++ ...|||.||+.|++.||..|...++++|.|++
T Consensus 1 m~~iy~DGs~~~----~n~g~~G~~G~vi~~-~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~t 75 (149)
T 2ehg_A 1 MIIGYFDGLCEP----KNPGGIATFGFVIYL-DNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKG 75 (149)
T ss_dssp CCEEEEEEEEES----SSSSSEEEEEEEEEC-SSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEE
T ss_pred CEEEEEeeccCC----CCCChheEEEEEEEE-CCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 378999999971 37889996 999999 7877655666555 25599999999999999999999999999999
Q ss_pred ccHHHHHHhhhhhhcchhHHHHHHHHHHHHhhhhhhHHhhcccccccccHHHHHHHhhccCC
Q 009997 134 DSELLYDQITREEKLDIPLLVALRQRILEYTSNLEAFVLKLVPSIELERPLRLAQIAVGIVS 195 (520)
Q Consensus 134 Dselv~~ql~g~~~~~~~~L~~l~~ril~l~~~f~~~~l~lvpr~~~~~a~klA~~Ai~~~~ 195 (520)
||+++++++++.|+.+.+.+..+.+++..+.+.| .+.+.|||+..|+.||+||+.++....
T Consensus 76 DS~~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~~~N~~AD~LA~~a~~~~~ 136 (149)
T 2ehg_A 76 DSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPREENKEADRLSRVAYELVR 136 (149)
T ss_dssp SCHHHHHHHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCGGGCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCCcccHHHHHHHHHHHHhhc
Confidence 9999999999999888888899999999999998 589999999999999999999976543
No 4
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.68 E-value=7.3e-18 Score=126.93 Aligned_cols=52 Identities=31% Similarity=0.772 Sum_probs=46.5
Q ss_pred cCCccCccccceeeecCCcceEEec---ccccccccccccccCCC-CcccCCCCCC
Q 009997 371 KRWRRCQQCRRMIELTHGCYHMTCW---CGHEFCYSCGAEYRDGQ-QTCQCAFWDE 422 (520)
Q Consensus 371 ~~~k~CP~C~~~IeK~~GCnhMtC~---Cg~~FCy~C~~~~~~~~-~~c~C~~~~~ 422 (520)
..+|+||+|+++|||++|||||||+ |+++|||+|+++|..++ ..+.|++|++
T Consensus 4 ~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~~~~y~C~~y~~ 59 (60)
T 1wd2_A 4 ANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGSAWYNCNRYNE 59 (60)
T ss_dssp CCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGGTSSSSSCSCCC
T ss_pred ccceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCCCccccCCCccc
Confidence 3569999999999999999999997 99999999999998754 4678999975
No 5
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.64 E-value=2.4e-16 Score=141.64 Aligned_cols=126 Identities=18% Similarity=0.213 Sum_probs=99.3
Q ss_pred ceEEEEeecccccccCCCCCcccceEEEEeecCCCceEEEeecccccchhhHHHHHHHHHHHHHHHHcCcceeeeecccH
Q 009997 57 FSVKMFFKGMSITEVGESSSGFSGIGVVMERSFNIPIMQVQKKLDFFVEESVADYLALMDGLITAVQNKIRCVYAFTDSE 136 (520)
Q Consensus 57 ~~~~~~fdG~~~~~~~~~n~~~ag~g~~i~~~~~~~~~~~~~~~~~~~tnn~AE~~ALi~~l~~a~~~~i~~v~i~~Dse 136 (520)
..++||+||+++ + |||.+|+|+++.+. + .....+..++. .|||.||+.|++.||..+.. ...|.|++||+
T Consensus 3 ~~i~iytDGs~~---~--n~g~~g~G~v~~~~-~-~~~~~~~~~~~-~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~ 72 (146)
T 3h08_A 3 KTITIYTDGAAS---G--NPGKGGWGALLMYG-S-SRKEISGYDPA-TTNNRMELMAAIKGLEALKE--PARVQLYSDSA 72 (146)
T ss_dssp CEEEEEEEEEES---S--TTEEEEEEEEEEET-T-EEEEEEEEEEE-ECHHHHHHHHHHHHHHTCSS--CCEEEEEESCH
T ss_pred ceEEEEEecCCC---C--CCCceEEEEEEEEC-C-eeEEeecCCCC-CcHHHHHHHHHHHHHHhcCc--cCcEEEEeChH
Confidence 468999999999 7 88999999999884 3 34566776654 49999999999999998864 58999999999
Q ss_pred HHHHHhhhhhh---------cc--hh-HHHHHHHHHHHHhhhhhhHHhhccc----ccccccHHHHHHHhhcc
Q 009997 137 LLYDQITREEK---------LD--IP-LLVALRQRILEYTSNLEAFVLKLVP----SIELERPLRLAQIAVGI 193 (520)
Q Consensus 137 lv~~ql~g~~~---------~~--~~-~L~~l~~ril~l~~~f~~~~l~lvp----r~~~~~a~klA~~Ai~~ 193 (520)
+++++|+++|. .. .+ ....+.+++..+...+. +.+.||+ +..|+.||+||+.++..
T Consensus 73 ~vi~~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~~~-v~~~~V~gH~g~~~N~~AD~LA~~a~~~ 144 (146)
T 3h08_A 73 YLVNAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTLHR-VTFHKVKGHSDNPYNSRADELARLAIKE 144 (146)
T ss_dssp HHHHHHHSSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHHSE-EEEEECCC-CCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhhCc-eEEEEcCCcCCcHhHHHHHHHHHHHHHh
Confidence 99999988431 11 11 12456677777766653 6788898 89999999999998754
No 6
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.63 E-value=4.7e-16 Score=141.07 Aligned_cols=131 Identities=19% Similarity=0.127 Sum_probs=101.3
Q ss_pred CceEEEEeecccccccCCCCC-cccceEEEEeecCCCceEEEeecccccchhhHHHHHHHHHHHHHHHHcCcceeeeecc
Q 009997 56 EFSVKMFFKGMSITEVGESSS-GFSGIGVVMERSFNIPIMQVQKKLDFFVEESVADYLALMDGLITAVQNKIRCVYAFTD 134 (520)
Q Consensus 56 ~~~~~~~fdG~~~~~~~~~n~-~~ag~g~~i~~~~~~~~~~~~~~~~~~~tnn~AE~~ALi~~l~~a~~~~i~~v~i~~D 134 (520)
+..++|||||+++ +++.+ +.||+||++.+... ..+++.+....|||.||+.|++.||..+...+..+|.|++|
T Consensus 5 ~~~~~iytDGs~~---~n~~~~~~aG~Gvv~~~~~~---~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tD 78 (154)
T 2qkb_A 5 GDFVVVYTDGCCS---SNGRRRPRAGIGVYWGPGHP---LNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTN 78 (154)
T ss_dssp TTEEEEEEEEEEE---TTTSSSCEEEEEEECSTTCT---TCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CCeEEEEEccCcC---CCCCCCCcEEEEEEEECCCc---eeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 4579999999999 62222 34999999886432 23456665456999999999999999999999999999999
Q ss_pred cHHHHHHhhh--------hhhcch--h-HHHHHHHHHHHHhhhhhhHHhhcccc----cccccHHHHHHHhhcc
Q 009997 135 SELLYDQITR--------EEKLDI--P-LLVALRQRILEYTSNLEAFVLKLVPS----IELERPLRLAQIAVGI 193 (520)
Q Consensus 135 selv~~ql~g--------~~~~~~--~-~L~~l~~ril~l~~~f~~~~l~lvpr----~~~~~a~klA~~Ai~~ 193 (520)
|++++++|++ +|+... + ....+.+++..+...+. +.+.|||+ ..|+.||+||+.++..
T Consensus 79 S~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~~~~-v~~~~V~~H~g~~~N~~AD~LA~~a~~~ 151 (154)
T 2qkb_A 79 SMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMD-IQWMHVPGHSGFIGNEEADRLAREGAKQ 151 (154)
T ss_dssp CHHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTTCE-EEEEECCTTSSCHHHHHHHHHHHHHHTC
T ss_pred cHHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHcCCc-eEEEEccCCCCCHhHHHHHHHHHHHHHh
Confidence 9999999987 233211 1 23467778888777765 88999997 5589999999998754
No 7
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.62 E-value=4.4e-16 Score=140.17 Aligned_cols=129 Identities=13% Similarity=0.015 Sum_probs=102.0
Q ss_pred CCceEEEEeecccccccCCCCCcccceEEEEeecCCCceEEEee-cc--cc--cchhhHHHHHHHHHHHHHHHHcCccee
Q 009997 55 DEFSVKMFFKGMSITEVGESSSGFSGIGVVMERSFNIPIMQVQK-KL--DF--FVEESVADYLALMDGLITAVQNKIRCV 129 (520)
Q Consensus 55 ~~~~~~~~fdG~~~~~~~~~n~~~ag~g~~i~~~~~~~~~~~~~-~~--~~--~~tnn~AE~~ALi~~l~~a~~~~i~~v 129 (520)
+...+.||+||+++ + |++|+|++|.+ +|.. ..++. .+ .. ..|||.||+.|++.||..|+..+. +|
T Consensus 3 ~~~~i~iytDGs~~------~-g~~G~G~vi~~-~g~~-~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v 72 (147)
T 2kq2_A 3 DRTEYDVYTDGSYV------N-GQYAWAYAFVK-DGKV-HYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KI 72 (147)
T ss_dssp TTSCCEEECCCCCB------T-TBCEEEEEEEE-TTEE-EEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CC
T ss_pred CCCeEEEEECCCCC------C-CCcEEEEEEEE-CCEE-EEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eE
Confidence 34568999999998 3 89999999988 4543 45554 22 32 359999999999999999999998 99
Q ss_pred eeecccHHHHHHhhhhhhcchhHHHHHHHHHHHHhhhhhhHHhhccc----ccccccHHHHHHHhhccCCC
Q 009997 130 YAFTDSELLYDQITREEKLDIPLLVALRQRILEYTSNLEAFVLKLVP----SIELERPLRLAQIAVGIVSS 196 (520)
Q Consensus 130 ~i~~Dselv~~ql~g~~~~~~~~L~~l~~ril~l~~~f~~~~l~lvp----r~~~~~a~klA~~Ai~~~~~ 196 (520)
.|++||+.+.+++.++|+...+....+.+.+.++.. .+.+.||| +..|+.||+||+.++.....
T Consensus 73 ~I~tDS~~i~~w~~~~w~~~~~~~~~~~~l~~~l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 140 (147)
T 2kq2_A 73 RILHDYAGIAFWATGEWKAKNEFTQAYAKLMNQYRG---IYSFEKVKAHSGNEFNDYVDMKAKSALGIRDL 140 (147)
T ss_dssp CBSSCCSTHHHHTTSSSSCCHHHHHHHHCGGGGGST---TCCBCCCCCCCCCHHHHHHHHHHHHHHTCCCT
T ss_pred EEEECcHHHHHHHhCCCccCCcchHHHHHHHHHhcC---CeeEEEecCcCCCcchHHHHHHHHHHHhcccc
Confidence 999999999999999998888766655555444433 56788888 46789999999999876554
No 8
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.60 E-value=1.9e-15 Score=134.60 Aligned_cols=80 Identities=11% Similarity=0.094 Sum_probs=71.2
Q ss_pred eEEEEeecccccccCCCCCcccceEEEEeecCCCceEEEeecccccchhhHHHHHHHHHHHHHHHHcCcceeeeecccHH
Q 009997 58 SVKMFFKGMSITEVGESSSGFSGIGVVMERSFNIPIMQVQKKLDFFVEESVADYLALMDGLITAVQNKIRCVYAFTDSEL 137 (520)
Q Consensus 58 ~~~~~fdG~~~~~~~~~n~~~ag~g~~i~~~~~~~~~~~~~~~~~~~tnn~AE~~ALi~~l~~a~~~~i~~v~i~~Dsel 137 (520)
.++|||||+|+ + |||+||+|++|. .+|.. ...+..++.+ |||.|||+|++.||..+.+.++ +|.|++||++
T Consensus 11 ~~~iy~DGa~~---g--NpG~~G~G~vl~-~~g~~-~~~~~~~~~~-TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~ 81 (142)
T 1zbf_A 11 WESLSVDVGSQ---G--NPGIVEYKGVDT-KTGEV-LFEREPIPIG-TNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQT 81 (142)
T ss_dssp SSSEEEEEEEC---S--SSEEEEEEEEET-TTCCE-EEECCCEEEE-CHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHH
T ss_pred eEEEEEeeccC---C--CCCCeEEEEEEE-eCCEE-EEEecccCCc-CcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHH
Confidence 58899999999 7 899999999998 56665 4555666654 9999999999999999999998 9999999999
Q ss_pred HHHHhhhhh
Q 009997 138 LYDQITREE 146 (520)
Q Consensus 138 v~~ql~g~~ 146 (520)
+++++.+++
T Consensus 82 vi~w~~~~~ 90 (142)
T 1zbf_A 82 AIKWVKDKK 90 (142)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHcCC
Confidence 999999987
No 9
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.58 E-value=4.8e-15 Score=129.69 Aligned_cols=97 Identities=14% Similarity=0.161 Sum_probs=75.0
Q ss_pred EEEEeecccccccCCCCCcccceEEEEeecCCCceEEEeecccccchhhHHHHHHHHHHHHHHHHcCcceeeeecccHHH
Q 009997 59 VKMFFKGMSITEVGESSSGFSGIGVVMERSFNIPIMQVQKKLDFFVEESVADYLALMDGLITAVQNKIRCVYAFTDSELL 138 (520)
Q Consensus 59 ~~~~fdG~~~~~~~~~n~~~ag~g~~i~~~~~~~~~~~~~~~~~~~tnn~AE~~ALi~~l~~a~~~~i~~v~i~~Dselv 138 (520)
..|||||+|+ | |||++|+|.++.+ +|..+ ..+..++.+ |||.|||+|+|.||..+.+.+.+ +.+++||++|
T Consensus 6 ~~iytDGac~---G--NPGp~G~ggV~~~-~g~~~-~~~g~~~~t-TNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyV 76 (134)
T 4htu_A 6 ESLSVDVGSQ---G--NPGIVEYKGVDTK-TGEVL-FEREPIPIG-TNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTA 76 (134)
T ss_dssp SSEEEEEEEE---T--TTEEEEEEEEETT-TCCEE-EEEEEEEEE-CHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHH
T ss_pred eEEEEeeccC---C--CCCCeEEEEEEEE-CCEEE-EEecCCCCC-chHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHH
Confidence 5699999999 8 9999999888877 56654 444556544 99999999999999999988876 8999999999
Q ss_pred HHHhhhh-hh------cchhHHHHHHHHHHHHh
Q 009997 139 YDQITRE-EK------LDIPLLVALRQRILEYT 164 (520)
Q Consensus 139 ~~ql~g~-~~------~~~~~L~~l~~ril~l~ 164 (520)
+++|.+. ++ +++..|....+++...+
T Consensus 77 i~wi~~~~~kt~~~~~vkN~dLw~~ld~~~~~l 109 (134)
T 4htu_A 77 IKWVKDKKAKSTLVRNEETALIWKLVDEAEEWL 109 (134)
T ss_dssp HHHHHHTCCCCCCCCSSTTHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcccCCCCCccCHHHHHHHHHHHHHH
Confidence 9999863 22 24555555555544433
No 10
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.58 E-value=1.6e-15 Score=125.81 Aligned_cols=86 Identities=19% Similarity=0.479 Sum_probs=76.9
Q ss_pred CccccccccccccCCCCeeec-cCCCcccHHHHHHHHHHhhhCCC-CccccCCCCcCcc--cchHHHhhcCCcccHHHHH
Q 009997 202 KSPENCSICCEDKPYPMMITM-KCSHKFCSHCMRTYIDGKVQSSQ-VPIRCPQLRCKYF--ISTVECKSFLPLSSYESLE 277 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~~i~~~i~~~~-~~i~CP~~~C~~~--l~~~~i~~~L~~~~~e~~~ 277 (520)
...++|+||+++++.+.++.+ +|||.||.+||++|++.+|.++. .+++||..+|+.. ++.+.++++++.+++++|.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky~ 82 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRYK 82 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCCHHHHHHHH
Confidence 457899999999988888877 79999999999999999998765 5899999999999 9999999999999999999
Q ss_pred HHHHHHhhcC
Q 009997 278 TALAEANILH 287 (520)
Q Consensus 278 ~~~~e~~~~~ 287 (520)
+++.+.++..
T Consensus 83 ~~~~~~~v~~ 92 (94)
T 1wim_A 83 KLQFERSGPS 92 (94)
T ss_dssp HHHHHSSCSS
T ss_pred HHHHHhhhcc
Confidence 9888776653
No 11
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.57 E-value=8.8e-15 Score=133.78 Aligned_cols=126 Identities=17% Similarity=0.051 Sum_probs=92.4
Q ss_pred ceEEEEeecccccccCCCCCcc-----cceEEEEeecCCCceEEEeeccc-ccchhhHHHHHHHHHHHHHHHHcCcceee
Q 009997 57 FSVKMFFKGMSITEVGESSSGF-----SGIGVVMERSFNIPIMQVQKKLD-FFVEESVADYLALMDGLITAVQNKIRCVY 130 (520)
Q Consensus 57 ~~~~~~fdG~~~~~~~~~n~~~-----ag~g~~i~~~~~~~~~~~~~~~~-~~~tnn~AE~~ALi~~l~~a~~~~i~~v~ 130 (520)
..+.||+||+|+ + |||+ ||+||++...+...-+..+.... ...|||.||+.||+.+|..|+..+. .|.
T Consensus 6 ~evviYTDGsc~---g--Npgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~~~-~v~ 79 (165)
T 2lsn_A 6 YEGVFYTDGSAI---K--SPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIPG-PVL 79 (165)
T ss_dssp CSEEEEEEEEEE---E--CSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHSSS-CEE
T ss_pred ceEEEEEcCCCC---C--CCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcCCC-eEE
Confidence 457899999999 8 7776 99999997643332112222221 2348889999999999998887764 699
Q ss_pred eecccHHHHHHhhh---hhh-----------cchhHHHHHHHHHHHHhhhhhhHHhhccc----------ccccccHHHH
Q 009997 131 AFTDSELLYDQITR---EEK-----------LDIPLLVALRQRILEYTSNLEAFVLKLVP----------SIELERPLRL 186 (520)
Q Consensus 131 i~~Dselv~~ql~g---~~~-----------~~~~~L~~l~~ril~l~~~f~~~~l~lvp----------r~~~~~a~kl 186 (520)
|++||++++++|+. .|+ +++ .+|.+++.+++..+..+.+.||+ +..|++||+|
T Consensus 80 I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN---~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~L 156 (165)
T 2lsn_A 80 VITDSFYVAESANKELPYWKSNGFVNNKKKPLKH---ISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKL 156 (165)
T ss_dssp EEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSS---HHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHH
T ss_pred EEeChHHHHhhhhhhhhhheeccccccCCCcccC---HHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHH
Confidence 99999999999975 222 233 35677777777777778888887 3458899999
Q ss_pred HHHhh
Q 009997 187 AQIAV 191 (520)
Q Consensus 187 A~~Ai 191 (520)
|+++.
T Consensus 157 A~~gA 161 (165)
T 2lsn_A 157 ATQGS 161 (165)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 98874
No 12
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.56 E-value=4.4e-15 Score=134.85 Aligned_cols=127 Identities=22% Similarity=0.172 Sum_probs=98.1
Q ss_pred eEEEEeecccccccCCCCCcccceEEEEeecCCCceEEEeecccccchhhHHHHHHHHHHHHHHHHcCcceeeeecccHH
Q 009997 58 SVKMFFKGMSITEVGESSSGFSGIGVVMERSFNIPIMQVQKKLDFFVEESVADYLALMDGLITAVQNKIRCVYAFTDSEL 137 (520)
Q Consensus 58 ~~~~~fdG~~~~~~~~~n~~~ag~g~~i~~~~~~~~~~~~~~~~~~~tnn~AE~~ALi~~l~~a~~~~i~~v~i~~Dsel 137 (520)
.++||+||+++ + |||++|+|+++.+.+ . ....+..++. .|||.||+.|++.||..+... ..|.|++||++
T Consensus 4 ~~~iytDGs~~---~--n~~~~G~G~v~~~~~-~-~~~~~~~~~~-~tn~~aEl~A~~~aL~~~~~~--~~v~I~tDS~~ 73 (155)
T 1jl1_A 4 QVEIFTAGSAL---G--NPGPGGYGAILRYRG-R-EKTFSAGYTR-TTNNRMELMAAIVALEALKEH--AEVILSTDSQY 73 (155)
T ss_dssp CEEEEEEEEES---S--TTEEEEEEEEEEETT-E-EEEEEEEEEE-ECHHHHHHHHHHHHHHTCCSC--CEEEEEECCHH
T ss_pred eEEEEEccccC---C--CCCceEEEEEEEECC-e-EEEEecCCCC-CcHHHHHHHHHHHHHHHhCcC--CcEEEEeCHHH
Confidence 58999999999 7 899999999998853 3 2455655544 499999999999999988653 79999999999
Q ss_pred HHHHhhh--------hhhcch--h-HHHHHHHHHHHHhhhhhhHHhhccc----ccccccHHHHHHHhhccCC
Q 009997 138 LYDQITR--------EEKLDI--P-LLVALRQRILEYTSNLEAFVLKLVP----SIELERPLRLAQIAVGIVS 195 (520)
Q Consensus 138 v~~ql~g--------~~~~~~--~-~L~~l~~ril~l~~~f~~~~l~lvp----r~~~~~a~klA~~Ai~~~~ 195 (520)
++++|++ +|+... + .-..+.+++..+.+.+ .+.+.||| +..|+.||+||+.++....
T Consensus 74 vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~-~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~ 145 (155)
T 1jl1_A 74 VRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-QIKWEWVKGHAGHPENERADELARAAAMNPT 145 (155)
T ss_dssp HHHHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTTC-EEEEEECCSSTTCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhhcccccccCCccCCHHHHHHHHHHHccC-ceEEEEcCCCCCCHHHHHHHHHHHHHHhccc
Confidence 9999997 332211 1 1135566677666653 67788998 7899999999999976544
No 13
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.56 E-value=5.1e-15 Score=134.86 Aligned_cols=126 Identities=20% Similarity=0.201 Sum_probs=97.7
Q ss_pred ceEEEEeecccccccCCCCCcccceEEEEeecCCCceEEEeecccccchhhHHHHHHHHHHHHHHHHcCcceeeeecccH
Q 009997 57 FSVKMFFKGMSITEVGESSSGFSGIGVVMERSFNIPIMQVQKKLDFFVEESVADYLALMDGLITAVQNKIRCVYAFTDSE 136 (520)
Q Consensus 57 ~~~~~~fdG~~~~~~~~~n~~~ag~g~~i~~~~~~~~~~~~~~~~~~~tnn~AE~~ALi~~l~~a~~~~i~~v~i~~Dse 136 (520)
..++||+||+++ + |||++|+|+++.+. +. +...+..++. .|||.||+.|++.||..+... ..|.|++||+
T Consensus 5 ~~i~iytDGs~~---~--n~g~~G~G~v~~~~-~~-~~~~~~~~~~-~tn~~aEl~A~~~AL~~~~~~--~~v~I~tDS~ 74 (158)
T 2e4l_A 5 KLIHIFTDGSCL---G--NPGPGGYGIVMNYK-GH-TKEMSDGFSL-TTNNRMELLAPIVALEALKEP--CKIILTSDSQ 74 (158)
T ss_dssp CEEEEEEEEEES---S--SSEEEEEEEEEEET-TE-EEEEEEEEEE-ECHHHHHHHHHHHHHHTCSSC--CEEEEEECCH
T ss_pred CeEEEEEccccc---C--CCCcEEEEEEEEEC-CE-EEEEecCcCC-CccHHHHHHHHHHHHHHhccC--CeEEEEeCHH
Confidence 369999999999 7 88999999999884 33 3566666654 499999999999999987533 8999999999
Q ss_pred HHHHHhhh--------hhhcch--h-HHHHHHHHHHHHhhhhhhHHhhccc----ccccccHHHHHHHhhcc
Q 009997 137 LLYDQITR--------EEKLDI--P-LLVALRQRILEYTSNLEAFVLKLVP----SIELERPLRLAQIAVGI 193 (520)
Q Consensus 137 lv~~ql~g--------~~~~~~--~-~L~~l~~ril~l~~~f~~~~l~lvp----r~~~~~a~klA~~Ai~~ 193 (520)
+++++|++ +|+... + .-..+.+++..+.+.+ .+.+.||| +..|+.||+||+.++..
T Consensus 75 ~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~-~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 75 YMRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQLH-QIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp HHHHHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTTS-EEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHccccccCCCcccCHHHHHHHHHHHccC-cEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 99999988 553211 1 1134556666666654 57788898 78899999999999865
No 14
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.54 E-value=1.4e-14 Score=132.64 Aligned_cols=130 Identities=13% Similarity=0.084 Sum_probs=98.1
Q ss_pred cccCCceEEEEeecccccccCCCCCcccceEEEEeecCCCceEEEeecccccchhhHHHHHHHHHHHHHHHHcCcceeee
Q 009997 52 EDLDEFSVKMFFKGMSITEVGESSSGFSGIGVVMERSFNIPIMQVQKKLDFFVEESVADYLALMDGLITAVQNKIRCVYA 131 (520)
Q Consensus 52 ~~~~~~~~~~~fdG~~~~~~~~~n~~~ag~g~~i~~~~~~~~~~~~~~~~~~~tnn~AE~~ALi~~l~~a~~~~i~~v~i 131 (520)
.+.+...+.||+||+++ + |||++|+|++|... |.. ...+ .+....|||.||++|++.+|..+ ....|.|
T Consensus 17 ~P~~~~~i~iytDGs~~---~--npG~~g~G~vi~~~-~~~-~~~~-~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I 85 (165)
T 3p1g_A 17 QPIPDADYTWYTDGSSF---L--QEGQRRAGAAVTTE-TEV-IWAR-ALPAGTSAQRAELIALTQALKMA---EGKKLNV 85 (165)
T ss_dssp SCCTTCSEEEEEEEEEE---E--ETTEEEEEEEEECS-SCE-EEEE-EECTTCCHHHHHHHHHHHHHHHT---BTSEEEE
T ss_pred CCCCCCCEEEEEEcccC---C--CCCceEEEEEEEEC-CEE-EEEe-cCCCCCcHHHHHHHHHHHHHHHc---cCceEEE
Confidence 34445569999999999 7 89999999999874 544 3444 34444599999999999999987 4689999
Q ss_pred ecccHHHHHHhh---hhhhcchhHHHHHHHHHHHHhhhhhhHHhhcccccc---------cccHHHHHHHhhccCC
Q 009997 132 FTDSELLYDQIT---REEKLDIPLLVALRQRILEYTSNLEAFVLKLVPSIE---------LERPLRLAQIAVGIVS 195 (520)
Q Consensus 132 ~~Dselv~~ql~---g~~~~~~~~L~~l~~ril~l~~~f~~~~l~lvpr~~---------~~~a~klA~~Ai~~~~ 195 (520)
++||+++++.+. .+..+++. .+.++++..+..+..+.+.||+... |+.||+||+.++....
T Consensus 86 ~tDS~~vi~~iw~~~~g~~v~n~---dl~~~l~~~l~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~~ 158 (165)
T 3p1g_A 86 YTDSRYAFATAHVHSEGREIKNK---NEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAV 158 (165)
T ss_dssp EECCHHHHHHHHSCCCSCCCSSH---HHHHHHHHHTTSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEchHHHHhhhhcccCCCcccCH---HHHHHHHHHHhcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcCC
Confidence 999999999882 12234433 4556665555567778899999755 7899999999865443
No 15
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.53 E-value=6e-15 Score=135.47 Aligned_cols=127 Identities=19% Similarity=0.148 Sum_probs=97.2
Q ss_pred eEEEEeecccccccCCCCCcccceEEEEeecCCCceEEEeecccccchhhHHHHHHHHHHHHHHHHcCcceeeeecccHH
Q 009997 58 SVKMFFKGMSITEVGESSSGFSGIGVVMERSFNIPIMQVQKKLDFFVEESVADYLALMDGLITAVQNKIRCVYAFTDSEL 137 (520)
Q Consensus 58 ~~~~~fdG~~~~~~~~~n~~~ag~g~~i~~~~~~~~~~~~~~~~~~~tnn~AE~~ALi~~l~~a~~~~i~~v~i~~Dsel 137 (520)
.++|||||+++ + |||.+|+|++|.+.+ .. ..++...+. .|||.||+.|++.||..+... ..|.|++||++
T Consensus 8 ~i~iytDGs~~---~--n~g~~G~G~v~~~~~-~~-~~~~~~~~~-~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~ 77 (166)
T 1ril_A 8 RVALFTDGACL---G--NPGPGGWAALLRFHA-HE-KLLSGGEAC-TTNNRMELKAAIEGLKALKEP--CEVDLYTDSHY 77 (166)
T ss_dssp CCCEEEEEEES---S--TTEEEEEEEEECBTT-BC-CEECCEEEE-ECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHH
T ss_pred cEEEEECcccc---C--CCCCEEEEEEEEECC-EE-EEEecCCCC-CcHHHHHHHHHHHHHHHhccC--CeEEEEeChHH
Confidence 58899999999 7 889999999998753 32 345555543 499999999999999987554 58999999999
Q ss_pred HHHHhhhh---------hhcch--h-HHHHHHHHHHHHhhhhhhHHhhccc----ccccccHHHHHHHhhccCC
Q 009997 138 LYDQITRE---------EKLDI--P-LLVALRQRILEYTSNLEAFVLKLVP----SIELERPLRLAQIAVGIVS 195 (520)
Q Consensus 138 v~~ql~g~---------~~~~~--~-~L~~l~~ril~l~~~f~~~~l~lvp----r~~~~~a~klA~~Ai~~~~ 195 (520)
++++|+++ |+... + .-..+.+++..+...+ .+.+.||+ +..|+.||+||+.++....
T Consensus 78 vi~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~~-~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 78 LKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPH-RVRFHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp HHHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTS-EEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred HHHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHhcC-eEEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 99999982 33211 1 1134566666666654 67788898 7899999999999976654
No 16
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.53 E-value=1e-14 Score=131.56 Aligned_cols=120 Identities=22% Similarity=0.178 Sum_probs=92.0
Q ss_pred eEEEEeecccccccCCCCCcccceEEEEeecCCCceEEEeecccccchhhHHHHHHHHHHHHHHHHcCcceeeeecccHH
Q 009997 58 SVKMFFKGMSITEVGESSSGFSGIGVVMERSFNIPIMQVQKKLDFFVEESVADYLALMDGLITAVQNKIRCVYAFTDSEL 137 (520)
Q Consensus 58 ~~~~~fdG~~~~~~~~~n~~~ag~g~~i~~~~~~~~~~~~~~~~~~~tnn~AE~~ALi~~l~~a~~~~i~~v~i~~Dsel 137 (520)
.++||+||+++ + |||++|+|+++.+.+. . .+ .++. .|||.||+.|++.||..+ ...|.|++||++
T Consensus 12 ~~~iytDGs~~---~--n~g~~g~G~v~~~~~~-~--~~--~~~~-~Tnn~aEl~A~i~AL~~~----~~~v~i~tDS~~ 76 (150)
T 3qio_A 12 AETFYVDGAAN---R--ETKLGKAGYVTNRGRQ-K--VV--TLTD-TTNQKTELQAIYLALQDS----GLEVNIVTDSQY 76 (150)
T ss_dssp CEEEEEEEEEC---T--TTCCEEEEEEETTSCE-E--EE--EESS-CCHHHHHHHHHHHHHHHS----CSEEEEEESCHH
T ss_pred CEEEEEccCCC---C--CCCCeEEEEEEEcCCE-E--EE--eCCC-CCHHHHHHHHHHHHHHhC----CCcEEEEeCcHH
Confidence 68999999999 7 8999999999987422 1 12 2343 499999999999999974 389999999999
Q ss_pred HHHHhhhh--------hhcc--hh-HHHHHHHHHHHHhhhhhhHHhhcccccc----cccHHHHHHHhhc
Q 009997 138 LYDQITRE--------EKLD--IP-LLVALRQRILEYTSNLEAFVLKLVPSIE----LERPLRLAQIAVG 192 (520)
Q Consensus 138 v~~ql~g~--------~~~~--~~-~L~~l~~ril~l~~~f~~~~l~lvpr~~----~~~a~klA~~Ai~ 192 (520)
++++|++- |+.. .+ .-.++.+++.+++..+..+.+.||++.. |+.||+||+.++.
T Consensus 77 v~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~ 146 (150)
T 3qio_A 77 ALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIR 146 (150)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHH
Confidence 99999872 1111 11 1246677777766677888899999976 9999999998764
No 17
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.26 E-value=5.3e-12 Score=137.39 Aligned_cols=116 Identities=18% Similarity=0.113 Sum_probs=90.4
Q ss_pred ceEEEEeecccccccCCCCCcccceEEEEeecCCCceEEEeecccccchhhHHHHHHHHHHHHHHHHcCcceeeeecccH
Q 009997 57 FSVKMFFKGMSITEVGESSSGFSGIGVVMERSFNIPIMQVQKKLDFFVEESVADYLALMDGLITAVQNKIRCVYAFTDSE 136 (520)
Q Consensus 57 ~~~~~~fdG~~~~~~~~~n~~~ag~g~~i~~~~~~~~~~~~~~~~~~~tnn~AE~~ALi~~l~~a~~~~i~~v~i~~Dse 136 (520)
..+.||+||+++ + |+|++|+|+++...+ . .+..+.. .|||.|||.|++.||.. +..+|.|++||+
T Consensus 435 ~~~~iytDGs~~---~--n~g~~g~G~v~~~~~-~----~~~~~~~-~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~ 499 (555)
T 1mu2_A 435 GAETFYTDGSCN---R--QSKEGKAGYVTDRGK-D----KVKKLEQ-TTNQQAELEAFAMALTD----SGPKVNIIVDSQ 499 (555)
T ss_dssp TCEEEEEEEEEC---T--TTCCEEEEEEETTSC-E----EEEEESS-CCHHHHHHHHHHHHHHT----SCSEEEEEESCH
T ss_pred CceEEEEccccc---C--CCCCceEEEEEEeCC-E----eeccCCC-CCHHHHHHHHHHHHHHc----CCCeEEEEEehH
Confidence 369999999999 7 888999999998742 1 1333433 49999999999999987 778999999999
Q ss_pred HHHHHhhhhhhcchhHHHHHHHHHHHHhhhhhhHHhhcccc----cccccHHHHHHHh
Q 009997 137 LLYDQITREEKLDIPLLVALRQRILEYTSNLEAFVLKLVPS----IELERPLRLAQIA 190 (520)
Q Consensus 137 lv~~ql~g~~~~~~~~L~~l~~ril~l~~~f~~~~l~lvpr----~~~~~a~klA~~A 190 (520)
++++++++-....++ .+.+++.++...+..+.+.||++ ..|+.||+||+.|
T Consensus 500 ~v~~~i~~~~~~~~~---~l~~~~~~~~~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 554 (555)
T 1mu2_A 500 YVMGIVASQPTESES---KIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQG 554 (555)
T ss_dssp HHHHHHHTCCSEESC---HHHHHHHHHHHHCSEEEEEECCSSSCCTTHHHHHHHHHTT
T ss_pred HHHHHHhcccccccH---HHHHHHHHHhccCCcEEEEEEECCCCChhHHHHHHHHHhh
Confidence 999999983223333 34456666655667778899988 5689999999876
No 18
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.25 E-value=3.1e-12 Score=139.26 Aligned_cols=116 Identities=18% Similarity=0.133 Sum_probs=86.1
Q ss_pred ceEEEEeecccccccCCCCCcccceEEEEeecCCCceEEEeecccccchhhHHHHHHHHHHHHHHHHcCcceeeeecccH
Q 009997 57 FSVKMFFKGMSITEVGESSSGFSGIGVVMERSFNIPIMQVQKKLDFFVEESVADYLALMDGLITAVQNKIRCVYAFTDSE 136 (520)
Q Consensus 57 ~~~~~~fdG~~~~~~~~~n~~~ag~g~~i~~~~~~~~~~~~~~~~~~~tnn~AE~~ALi~~l~~a~~~~i~~v~i~~Dse 136 (520)
..++||+||+++ + |+|++|+|+++.+ |... .. ..+ ..|||.|||.|++.||..+ ..+|.|++||+
T Consensus 438 ~~~~iytDGs~~---~--n~g~~g~g~v~~~--~~~~-~~--~~~-~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~ 502 (557)
T 2zd1_A 438 GAETFYVDGAAN---R--ETKLGKAGYVTNK--GRQK-VV--PLT-NTTNQKTELQAIYLALQDS----GLEVNIVTDSQ 502 (557)
T ss_dssp TSCEEEEEEEEC---T--TTCCEEEEEEETT--SCEE-EE--EEC-SCCHHHHHHHHHHHHHHHS----CSEEEEEECCH
T ss_pred CCEEEEEccCCC---C--CCCceEEEEEEEC--CcEE-Ee--cCC-CCCHHHHHHHHHHHHHHhC----CCcEEEEeChH
Confidence 359999999999 7 8899999999974 3321 12 233 3499999999999999987 68999999999
Q ss_pred HHHHHhhhhhhcchhHHHHHHHHHHHHhhhhhhHHhhcccc----cccccHHHHHHHh
Q 009997 137 LLYDQITREEKLDIPLLVALRQRILEYTSNLEAFVLKLVPS----IELERPLRLAQIA 190 (520)
Q Consensus 137 lv~~ql~g~~~~~~~~L~~l~~ril~l~~~f~~~~l~lvpr----~~~~~a~klA~~A 190 (520)
+++++|++.....++ .+.+++++....+..+.+.||++ ..|+.||+||+.|
T Consensus 503 ~vi~~i~~~~~~~~~---~l~~~~~~~l~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 503 YALGIIQAQPDKSES---ELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp HHHHHHTTCCSEESS---HHHHHHHHHHHHCSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred HHHHHHhcCCccCCH---HHHHHHHHHHhcCCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 999999984333233 33445554444556788899998 4589999988754
No 19
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.09 E-value=5.1e-12 Score=102.69 Aligned_cols=74 Identities=27% Similarity=0.578 Sum_probs=58.8
Q ss_pred CcccHHHHHHHHHHHhhc-CCCceeccCCCCCeeecCcccccccccCCCCCCCCceeCCCCCcceeccCCCcc---CCCC
Q 009997 269 PLSSYESLETALAEANIL-HSDRIYCPFPNCSVLLDPRECLSARASSSSQSDNSCVECPVCERFICVECGVPW---HSSL 344 (520)
Q Consensus 269 ~~~~~e~~~~~~~e~~~~-~~~~~~CP~p~C~~~~~~~~~~~~~~~~~~~~~~~~~~Cp~C~~~fC~~C~~~w---H~~~ 344 (520)
+.+++++|.+++.+..+. .++++||| +|++++.... +...+.||.|++.||+.|+.+| |.+.
T Consensus 3 s~~~~e~y~~~l~e~~v~~~~~~~wCP--~C~~~~~~~~------------~~~~v~C~~C~~~FC~~C~~~w~~~H~~~ 68 (86)
T 2ct7_A 3 SGSSGALFHKKLTEGVLMRDPKFLWCA--QCSFGFIYER------------EQLEATCPQCHQTFCVRCKRQWEEQHRGR 68 (86)
T ss_dssp CCCCCCSSSSCCCCSCCCSCCCEECCS--SSCCCEECCC------------SCSCEECTTTCCEECSSSCSBCCTTTTTS
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEeECc--CCCchheecC------------CCCceEeCCCCCccccccCCchhhcCCCC
Confidence 346677888887777775 56678999 8998775432 1234899999999999999999 9999
Q ss_pred CchhhhcCchhh
Q 009997 345 SCEEYQNLPLEE 356 (520)
Q Consensus 345 tC~e~~~~~~~~ 356 (520)
+|.++++|..++
T Consensus 69 sC~~~~~w~~~n 80 (86)
T 2ct7_A 69 SCEDFQNWKRMN 80 (86)
T ss_dssp CHHHHHHHHHHH
T ss_pred ChHHHHHHHHhC
Confidence 999999887654
No 20
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=98.99 E-value=2.3e-11 Score=97.36 Aligned_cols=69 Identities=28% Similarity=0.551 Sum_probs=57.8
Q ss_pred cCCcccHHHHHHHHHHHhhcCCCceeccCCCCCeeecCcccccccccCCCCCCCCceeCC-----CCCcceeccCCCccC
Q 009997 267 FLPLSSYESLETALAEANILHSDRIYCPFPNCSVLLDPRECLSARASSSSQSDNSCVECP-----VCERFICVECGVPWH 341 (520)
Q Consensus 267 ~L~~~~~e~~~~~~~e~~~~~~~~~~CP~p~C~~~~~~~~~~~~~~~~~~~~~~~~~~Cp-----~C~~~fC~~C~~~wH 341 (520)
+|+++++++|++++.+..+....++|||.|+|++++.... +...+.|+ .|++.||+.|+.+||
T Consensus 2 ~l~~~~~~rY~~~~~e~~v~~~~~~~CP~p~C~~~v~~~~------------~~~~v~C~~~~~~~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 2 HMGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEP------------DQRKVTCEGGNGLGCGFAFCRECKEAYH 69 (80)
T ss_dssp CCCCCCCCSCCCSSSCCSSCCCSSCCCCSSSCCCCCCCCS------------CTTSBCTTSSSTTCCSCCEETTTTEECC
T ss_pred CCCHHHHHHHHHHHHHHHhhhCCcEECCCCCCCcccEECC------------CCCcCCCCCCCCCCCCCeeccccCcccc
Confidence 5778889999988888888766799999999999886542 12348898 999999999999999
Q ss_pred CCCCchh
Q 009997 342 SSLSCEE 348 (520)
Q Consensus 342 ~~~tC~e 348 (520)
. .+|.+
T Consensus 70 ~-~~C~~ 75 (80)
T 2jmo_A 70 E-GECSA 75 (80)
T ss_dssp S-SCSSS
T ss_pred C-Ccccc
Confidence 9 99975
No 21
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.72 E-value=6e-10 Score=97.53 Aligned_cols=116 Identities=22% Similarity=0.570 Sum_probs=77.0
Q ss_pred ccccccccccccCCC-----CeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchHHHhhcCCcccHHHHH
Q 009997 203 SPENCSICCEDKPYP-----MMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVECKSFLPLSSYESLE 277 (520)
Q Consensus 203 ~~~~C~IC~e~~~~~-----~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~L~~~~~e~~~ 277 (520)
...+|+||++.+..+ ..+.++|||.||..|+.+|+... ..||. |+..+....+..+.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-------~~CP~--Cr~~~~~~~l~~l~--------- 67 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-------NTCPT--CRKKINHKRYHPIY--------- 67 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC-------SBCTT--TCCBCTTTCEEECB---------
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC-------CCCCC--CCCcCccccccccc---------
Confidence 468999999987432 23667999999999999998632 37998 99888765443321
Q ss_pred HHHHHHhhcCCCceeccCCCCCeeecCcccccccccCCCCCCCCceeCCCCCcceeccCCCccCCCCCchhhhcCchhhc
Q 009997 278 TALAEANILHSDRIYCPFPNCSVLLDPRECLSARASSSSQSDNSCVECPVCERFICVECGVPWHSSLSCEEYQNLPLEER 357 (520)
Q Consensus 278 ~~~~e~~~~~~~~~~CP~p~C~~~~~~~~~~~~~~~~~~~~~~~~~~Cp~C~~~fC~~C~~~wH~~~tC~e~~~~~~~~~ 357 (520)
...+...||- |...+..... .........|++.||..|-..|..
T Consensus 68 --------i~~~~~~C~i--C~~~~~~~~~-----------~~~~~~~~~CgH~fc~~Ci~~~~~--------------- 111 (133)
T 4ap4_A 68 --------IGSGTVSCPI--CMDGYSEIVQ-----------NGRLIVSTECGHVFCSQCLRDSLK--------------- 111 (133)
T ss_dssp --------CSSSSCBCTT--TCCBHHHHHH-----------TTCCEEEETTSBEEEHHHHHHHHH---------------
T ss_pred --------cCCCCCCCCC--CCCccccccc-----------cCcceEeCCCCChhhHHHHHHHHH---------------
Confidence 1234567875 7644322100 001123347999999999776521
Q ss_pred CchHHHHHHHHhccCCccCccccceeeec
Q 009997 358 DAGDITLHRLAQNKRWRRCQQCRRMIELT 386 (520)
Q Consensus 358 ~~~~~~l~~l~~~~~~k~CP~C~~~IeK~ 386 (520)
.+ +.||.|+..|.++
T Consensus 112 -----------~~---~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 112 -----------NA---NTCPTCRKKINHK 126 (133)
T ss_dssp -----------HC---SBCTTTCCBCCGG
T ss_pred -----------cC---CCCCCCCCcCChh
Confidence 11 7999999998865
No 22
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.68 E-value=7.9e-09 Score=94.78 Aligned_cols=118 Identities=20% Similarity=0.435 Sum_probs=71.8
Q ss_pred CccccccccccccCCCCeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchHHHhhcCCcccHHHHHHHHH
Q 009997 202 KSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVECKSFLPLSSYESLETALA 281 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~L~~~~~e~~~~~~~ 281 (520)
...+.|+||++.+..+ +.++|||.||..|+.+++.... .+||. |+..+....+. +... +.+.+
T Consensus 16 ~~~~~C~IC~~~~~~p--v~~~CgH~fC~~Ci~~~~~~~~------~~CP~--Cr~~~~~~~~~---~~~~---~~~~i- 78 (170)
T 3hcs_A 16 ESKYECPICLMALREA--VQTPCGHRFCKACIIKSIRDAG------HKCPV--DNEILLENQLF---PDNF---AKREI- 78 (170)
T ss_dssp CGGGBCTTTCSBCSSE--EECTTSCEEEHHHHHHHHHHHC------SBCTT--TCCBCCGGGCE---ECHH---HHHHH-
T ss_pred CCCCCCCCCChhhcCc--EECCCCCHHHHHHHHHHHHhCC------CCCCC--CccCcchhhhh---hhHH---HHHHH-
Confidence 3578999999987654 6679999999999999997542 27998 88888764322 1111 11111
Q ss_pred HHhhcCCCceeccCCCCCeeecCcccccccccCCCCCCCCceeCCCCCcceeccCCCccCCCCCc
Q 009997 282 EANILHSDRIYCPFPNCSVLLDPRECLSARASSSSQSDNSCVECPVCERFICVECGVPWHSSLSC 346 (520)
Q Consensus 282 e~~~~~~~~~~CP~p~C~~~~~~~~~~~~~~~~~~~~~~~~~~Cp~C~~~fC~~C~~~wH~~~tC 346 (520)
..-.++||+.+|+..+...+...-. ..=....+.||.|+..+ ......+|....|
T Consensus 79 -----~~l~v~C~n~GC~~~~~~~~l~~H~----~~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C 133 (170)
T 3hcs_A 79 -----LSLMVKCPNEGCLHKMELRHLEDHQ----AHCEFALMDCPQCQRPF-QKFHINIHILKDC 133 (170)
T ss_dssp -----HTSEEECCSTTCCCEEEGGGHHHHH----TTCTTSEEECTTTCCEE-EGGGHHHHHHHTC
T ss_pred -----hhcccCCCCCCCCceecHhHHHHHH----hcCCceeeECCCCChHH-HHHHHHHHhhhhC
Confidence 1246899999999877655432100 00011235677666655 2333334443334
No 23
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.44 E-value=1.8e-07 Score=80.01 Aligned_cols=81 Identities=25% Similarity=0.520 Sum_probs=57.7
Q ss_pred cccccccccccCCCCeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchHHHhhcCCcccHHHHHHHHHHH
Q 009997 204 PENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVECKSFLPLSSYESLETALAEA 283 (520)
Q Consensus 204 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~L~~~~~e~~~~~~~e~ 283 (520)
.+.|+||++.+..+ +.++|||.||..|+..|+... ...||. |+..+....+... ...+...+
T Consensus 23 ~~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~~------~~~CP~--Cr~~~~~~~~~~~-----~~~l~~~i--- 84 (116)
T 1rmd_A 23 SISCQICEHILADP--VETSCKHLFCRICILRCLKVM------GSYCPS--CRYPCFPTDLESP-----VKSFLNIL--- 84 (116)
T ss_dssp HTBCTTTCSBCSSE--EECTTSCEEEHHHHHHHHHHT------CSBCTT--TCCBCCGGGCBCC-----CHHHHHHH---
T ss_pred CCCCCCCCcHhcCc--EEcCCCCcccHHHHHHHHhHC------cCcCCC--CCCCCCHhhcccc-----HHHHHHHH---
Confidence 57899999987543 557999999999999999853 347998 9998887554322 12222222
Q ss_pred hhcCCCceeccCCCCCeeecCc
Q 009997 284 NILHSDRIYCPFPNCSVLLDPR 305 (520)
Q Consensus 284 ~~~~~~~~~CP~p~C~~~~~~~ 305 (520)
..-.++||+.+|+..+...
T Consensus 85 ---~~l~v~C~~~gC~~~~~~~ 103 (116)
T 1rmd_A 85 ---NSLMVKCPAQDCNEEVSLE 103 (116)
T ss_dssp ---HHCEEECCSTTCCCEEEHH
T ss_pred ---HHhcCCCCCCCCcchhhHh
Confidence 1246899999999877543
No 24
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=3.4e-07 Score=74.00 Aligned_cols=59 Identities=20% Similarity=0.543 Sum_probs=45.6
Q ss_pred CccccccccccccCCCC--eeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchHHHhh
Q 009997 202 KSPENCSICCEDKPYPM--MITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVECKS 266 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~i~~ 266 (520)
....+|+||++.+.... .+.++|||.||..|+.+|+... ...++||. |+..+....+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~----~~~~~CP~--Cr~~~~~~~i~~ 73 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS----INGVRCPF--CSKITRITSLTQ 73 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC----SSCBCCTT--TCCCBCCSSTTT
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC----CCCcCCCC--CCCcccchhHHH
Confidence 45689999999987543 4567999999999999999864 12468998 998877655443
No 25
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=2.9e-07 Score=73.71 Aligned_cols=59 Identities=24% Similarity=0.594 Sum_probs=45.9
Q ss_pred CCccccccccccccCCCCeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchHHH
Q 009997 201 DKSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVEC 264 (520)
Q Consensus 201 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~i 264 (520)
.....+|+||++.+..+ +.++|||.||..|+..|+..+...+. .+.||. |+..+..+.+
T Consensus 16 ~~~~~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~~~~~~~-~~~CP~--Cr~~~~~~~~ 74 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQP--LSLDCGHSFCQACLTANHKKSMLDKG-ESSCPV--CRISYQPENI 74 (85)
T ss_dssp CCCCCCCTTTCSCCSSC--BCCSSSCCBCTTHHHHHHHHHHHTTS-CCCCTT--TCCSSCSSSC
T ss_pred ccCCCCCCCCCcccCCc--eeCCCCCHHHHHHHHHHHHHhhcCCC-CCcCCC--CCCccCHHhc
Confidence 34578999999987654 45699999999999999988654332 568999 9988776443
No 26
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.37 E-value=7.2e-08 Score=76.39 Aligned_cols=60 Identities=25% Similarity=0.525 Sum_probs=45.9
Q ss_pred CccccccccccccCCCCeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchHHHh
Q 009997 202 KSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVECK 265 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~i~ 265 (520)
....+|+||++.+..+ +.++|||.||..|+..|+............||. |+..+....+.
T Consensus 10 ~~~~~C~IC~~~~~~p--~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~--Cr~~~~~~~l~ 69 (79)
T 2egp_A 10 QEEVTCPICLELLTEP--LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPV--CGISYSFEHLQ 69 (79)
T ss_dssp CCCCEETTTTEECSSC--CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSS--SCCCCCSSGGG
T ss_pred ccCCCCcCCCcccCCe--eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCC--CCCcCCHhhCC
Confidence 4578999999988654 457999999999999998764433334678999 99888765443
No 27
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.36 E-value=5.4e-07 Score=77.35 Aligned_cols=83 Identities=22% Similarity=0.435 Sum_probs=58.2
Q ss_pred CccccccccccccCCCCeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchHHHhhcCCcccHHHHHHHHH
Q 009997 202 KSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVECKSFLPLSSYESLETALA 281 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~L~~~~~e~~~~~~~ 281 (520)
...+.|+||++.+..+ +.++|||.||..|+..|+...- ..||. |+..+....+. +... +.+.+
T Consensus 16 ~~~~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~~~------~~CP~--Cr~~~~~~~~~---~~~~---l~~~i- 78 (118)
T 3hct_A 16 ESKYECPICLMALREA--VQTPCGHRFCKACIIKSIRDAG------HKCPV--DNEILLENQLF---PDNF---AKREI- 78 (118)
T ss_dssp CGGGBCTTTCSBCSSE--EECTTSCEEEHHHHHHHHHHHC------SBCTT--TCCBCCGGGCE---ECHH---HHHHH-
T ss_pred CCCCCCCcCChhhcCe--EECCcCChhhHHHHHHHHhhCC------CCCCC--CCCCcCHHhcc---cCHH---HHHHH-
Confidence 4568999999887644 6679999999999999987542 27998 98888764321 1111 11111
Q ss_pred HHhhcCCCceeccCCCCCeeecCcc
Q 009997 282 EANILHSDRIYCPFPNCSVLLDPRE 306 (520)
Q Consensus 282 e~~~~~~~~~~CP~p~C~~~~~~~~ 306 (520)
..-.++||+.+|+..+...+
T Consensus 79 -----~~l~v~C~n~gC~~~~~~~~ 98 (118)
T 3hct_A 79 -----LSLMVKCPNEGCLHKMELRH 98 (118)
T ss_dssp -----HTSEEECSSTTCCCEEEGGG
T ss_pred -----ccceeECCCCCCCCEEeeHH
Confidence 13468999999998776544
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.36 E-value=4.5e-07 Score=72.55 Aligned_cols=59 Identities=24% Similarity=0.529 Sum_probs=45.4
Q ss_pred CCccccccccccccCCCCeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchHHH
Q 009997 201 DKSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVEC 264 (520)
Q Consensus 201 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~i 264 (520)
....++|+||++.+..+ +.++|+|.||..|+..|+...... .....||. |+..+..+.+
T Consensus 16 ~~~~~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~~~~~-~~~~~CP~--Cr~~~~~~~~ 74 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP--VSADCNHSFCRACITLNYESNRNT-DGKGNCPV--CRVPYPFGNL 74 (85)
T ss_dssp CCTTTSCTTTCSCCSSC--EECTTSCCBCHHHHHHHHHHSBCT-TSCBCCTT--TCCCCCTTCC
T ss_pred CccCCCCcCCChhhCcc--eeCCCCCHHHHHHHHHHHHhccCC-CCCCCCCC--CCCcCCHHhC
Confidence 34578999999987654 457999999999999999875422 22568998 9988876543
No 29
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.33 E-value=5.7e-07 Score=76.19 Aligned_cols=70 Identities=30% Similarity=0.553 Sum_probs=49.5
Q ss_pred cccccccccccCCCCeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchHHHhhcC-CcccHHHHHHHHH
Q 009997 204 PENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVECKSFL-PLSSYESLETALA 281 (520)
Q Consensus 204 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~L-~~~~~e~~~~~~~ 281 (520)
..+|+||++.+..+ +.++|||.||..|+..|+... ..++.||. |+..+....+.... -..+.+.+.+.+.
T Consensus 21 ~~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~~----~~~~~CP~--Cr~~~~~~~~~~~~~l~~~~~~~~~~~~ 91 (112)
T 1jm7_A 21 ILECPICLELIKEP--VSTKCDHIFCKFCMLKLLNQK----KGPSQCPL--CKNDITKRSLQESTRFSQLVEELLKIIC 91 (112)
T ss_dssp HTSCSSSCCCCSSC--CBCTTSCCCCSHHHHHHHHSS----SSSCCCTT--TSCCCCTTTCBCCCSSSHHHHHHHHHHH
T ss_pred CCCCcccChhhcCe--EECCCCCHHHHHHHHHHHHhC----CCCCCCcC--CCCcCCHhhcCccHHHHHHHHHHHHHHH
Confidence 57899999987644 457999999999999998743 22468998 99988876554432 2334455544443
No 30
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=6e-07 Score=69.85 Aligned_cols=53 Identities=26% Similarity=0.521 Sum_probs=42.0
Q ss_pred CCccccccccccccCCCCeeec-cCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchHHH
Q 009997 201 DKSPENCSICCEDKPYPMMITM-KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVEC 264 (520)
Q Consensus 201 ~~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~i 264 (520)
.....+|+||++.+..+ +.+ +|+|.||..|+..|+.. ..+||. |+..+....+
T Consensus 12 ~~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~-------~~~CP~--Cr~~~~~~~~ 65 (72)
T 2djb_A 12 LTPYILCSICKGYLIDA--TTITECLHTFCKSCIVRHFYY-------SNRCPK--CNIVVHQTQP 65 (72)
T ss_dssp CCGGGSCTTTSSCCSSC--EECSSSCCEECHHHHHHHHHH-------CSSCTT--TCCCCCSSCS
T ss_pred cCCCCCCCCCChHHHCc--CEECCCCCHHHHHHHHHHHHc-------CCcCCC--cCcccCcccc
Confidence 34578999999987643 555 99999999999999975 247998 9988776443
No 31
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.31 E-value=5.3e-07 Score=66.02 Aligned_cols=50 Identities=26% Similarity=0.562 Sum_probs=39.3
Q ss_pred CccccccccccccCC--CCeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccc
Q 009997 202 KSPENCSICCEDKPY--PMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 260 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~--~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 260 (520)
....+|+||++.+.. ...+.++|+|.||..|+.+|+... ..||. |+..++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-------~~CP~--Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-------YRCPL--CSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-------CCCTT--SCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-------CcCCC--CCCcCC
Confidence 356889999998754 234556999999999999999864 47998 877653
No 32
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=4.7e-07 Score=69.16 Aligned_cols=52 Identities=23% Similarity=0.581 Sum_probs=41.0
Q ss_pred CccccccccccccCCCCeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchHH
Q 009997 202 KSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVE 263 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~ 263 (520)
...++|+||++.+..+ +.++|||.||..|+.+|+. .....||. |+..+..+.
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~------~~~~~CP~--Cr~~~~~~~ 64 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP--KQTECGHRFCESCMAALLS------SSSPKCTA--CQESIVKDK 64 (66)
T ss_dssp CCCEECTTTCCEESSC--CCCSSSCCCCHHHHHHHHT------TSSCCCTT--TCCCCCTTT
T ss_pred CcCCCCCCCChHhcCe--eECCCCCHHHHHHHHHHHH------hCcCCCCC--CCcCCChhh
Confidence 4578999999988655 4479999999999999986 12457998 988876543
No 33
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=3.3e-07 Score=71.41 Aligned_cols=54 Identities=26% Similarity=0.579 Sum_probs=41.6
Q ss_pred CccccccccccccCCCCeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchHH
Q 009997 202 KSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVE 263 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~ 263 (520)
....+|+||++.+.. .+.++|||.||..|+..|+.. .....+||. |+..+..+.
T Consensus 18 ~~~~~C~IC~~~~~~--~~~~~CgH~fC~~Ci~~~~~~----~~~~~~CP~--Cr~~~~~~~ 71 (73)
T 2ysl_A 18 QEEVICPICLDILQK--PVTIDCGHNFCLKCITQIGET----SCGFFKCPL--CKTSVRKNA 71 (73)
T ss_dssp CCCCBCTTTCSBCSS--EEECTTCCEEEHHHHHHHCSS----SCSCCCCSS--SCCCCCCCC
T ss_pred ccCCEeccCCcccCC--eEEcCCCChhhHHHHHHHHHc----CCCCCCCCC--CCCcCCccc
Confidence 457899999998764 356799999999999999762 223568998 988876543
No 34
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=1.5e-06 Score=65.56 Aligned_cols=45 Identities=27% Similarity=0.673 Sum_probs=35.8
Q ss_pred CccccccccccccCCCCeeeccCCCcccHHHHHHHHHHhhhCCCCccccCC
Q 009997 202 KSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQ 252 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~ 252 (520)
....+|+||++.+..+ +.++|||.||..|+.+|++.. ....+||.
T Consensus 18 ~~~~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~~----~~~~~CP~ 62 (63)
T 2ysj_A 18 QEEVICPICLDILQKP--VTIDCGHNFCLKCITQIGETS----CGFFKCPL 62 (63)
T ss_dssp CCCCBCTTTCSBCSSC--EECTTSSEECHHHHHHHHHHC----SSCCCCSC
T ss_pred ccCCCCCcCCchhCCe--EEeCCCCcchHHHHHHHHHcC----CCCCcCcC
Confidence 4578999999988654 567999999999999999842 22457986
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.25 E-value=3.8e-07 Score=69.47 Aligned_cols=56 Identities=18% Similarity=0.505 Sum_probs=41.9
Q ss_pred ccccccccc-ccCCCC--eeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchHHHhhc
Q 009997 204 PENCSICCE-DKPYPM--MITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVECKSF 267 (520)
Q Consensus 204 ~~~C~IC~e-~~~~~~--~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~ 267 (520)
..+|+||++ .+..+. .+.++|||.||..|+.+++... +.+||. |+..+....++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~------~~~CP~--Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG------AGNCPE--CGTPLRKSNFRVQ 61 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT------SSSCTT--TCCCCSSCCCEEE
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC------CCcCCC--CCCccccccceee
Confidence 578999999 554443 2456999999999999997631 457998 9998877665543
No 36
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=6.1e-07 Score=69.62 Aligned_cols=55 Identities=25% Similarity=0.516 Sum_probs=43.1
Q ss_pred CCccccccccccccCCCCeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchHHHhh
Q 009997 201 DKSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVECKS 266 (520)
Q Consensus 201 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~i~~ 266 (520)
.....+|+||++.+... +.++|+|.||..|+..|+... ..||. |+..+....+.+
T Consensus 12 ~~~~~~C~IC~~~~~~~--~~~~CgH~fC~~Ci~~~~~~~-------~~CP~--Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHP--VSLPCKHVFCYLCVKGASWLG-------KRCAL--CRQEIPEDFLDS 66 (71)
T ss_dssp SSSCCBCSSSSSBCSSE--EEETTTEEEEHHHHHHCTTCS-------SBCSS--SCCBCCHHHHSC
T ss_pred CCCCCCCccCCcccCCC--EEccCCCHHHHHHHHHHHHCC-------CcCcC--cCchhCHhhccC
Confidence 34568999999987543 667999999999999987532 47999 999988766543
No 37
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.19 E-value=6e-07 Score=67.81 Aligned_cols=55 Identities=25% Similarity=0.718 Sum_probs=42.0
Q ss_pred ccccccccccccCCC-----CeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchHHHhh
Q 009997 203 SPENCSICCEDKPYP-----MMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVECKS 266 (520)
Q Consensus 203 ~~~~C~IC~e~~~~~-----~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~i~~ 266 (520)
...+|+||++.+..+ ..+.++|||.||..|+.+|++. ...||. |+..+....+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-------~~~CP~--Cr~~~~~~~~~~ 61 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-------ANTCPT--CRKKINHKRYHP 61 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-------CSBCTT--TCCBCTTTCEEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-------CCCCCC--CCccCCccceee
Confidence 357899999987532 2355699999999999999875 237998 998887655443
No 38
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.18 E-value=1.6e-07 Score=83.26 Aligned_cols=89 Identities=22% Similarity=0.460 Sum_probs=56.2
Q ss_pred CccccccccccccCCCCeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchHHHhhcCCc-ccH-HHHHHH
Q 009997 202 KSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVECKSFLPL-SSY-ESLETA 279 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~L~~-~~~-e~~~~~ 279 (520)
...++|+||++.+..+ +.++|||.||..|+..|+... ...||. |+..+.......++.. .++ ....+
T Consensus 29 ~~~~~C~IC~~~~~~p--v~~~CgH~FC~~Ci~~~~~~~------~~~CP~--Cr~~~~~~~~~~~l~~~~~~~d~~~~- 97 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP--FQAQCGHRYCSFCLASILSSG------PQNCAA--CVHEGIYEEGISILESSSAFPDNAAR- 97 (141)
T ss_dssp CGGGBCTTTCSBCSSE--EECTTSCEEEHHHHHHHGGGS------CEECHH--HHHTTCCCTTTTEECGGGCEECHHHH-
T ss_pred CcCcCCCCCChhhcCc--EECCCCCccCHHHHHHHHhcC------CCCCCC--CCCcccccccccccchhhhcccHHHH-
Confidence 3578999999987655 667999999999999998521 357998 8776543322222211 111 11111
Q ss_pred HHHHhhcCCCceeccCCCCCeeecCc
Q 009997 280 LAEANILHSDRIYCPFPNCSVLLDPR 305 (520)
Q Consensus 280 ~~e~~~~~~~~~~CP~p~C~~~~~~~ 305 (520)
..+ ..-.++||+.+|+..+...
T Consensus 98 ---~~i-~~L~v~Cpn~GC~~~~~l~ 119 (141)
T 3knv_A 98 ---REV-ESLPAVCPSDGCTWKGTLK 119 (141)
T ss_dssp ---HHH-HTSEEECCSTTCCCEEEHH
T ss_pred ---HHH-cccccccCCCCCCCEeEHH
Confidence 111 1346899999999776544
No 39
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.14 E-value=7.8e-07 Score=68.76 Aligned_cols=56 Identities=25% Similarity=0.722 Sum_probs=42.5
Q ss_pred CccccccccccccCC-----CCeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchHHHhh
Q 009997 202 KSPENCSICCEDKPY-----PMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVECKS 266 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~i~~ 266 (520)
....+|+||++.+.. ...+.++|||.||..|+.+|+... ..||. |+..+....++.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-------~~CP~--Cr~~~~~~~~~~ 68 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-------NTCPT--CRKKINHKRYHP 68 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-------SBCTT--TCCBCCCCSCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-------CCCCC--CCCccChhheee
Confidence 356899999988643 223566999999999999998743 37998 998887655443
No 40
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.14 E-value=3.3e-06 Score=64.90 Aligned_cols=51 Identities=24% Similarity=0.572 Sum_probs=40.0
Q ss_pred CCccccccccccccCCC-CeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccc
Q 009997 201 DKSPENCSICCEDKPYP-MMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 260 (520)
Q Consensus 201 ~~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 260 (520)
.....+|+||++.+... ..+.++|+|.||..|+..|+... ..||. |+..+.
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-------~~CP~--Cr~~~~ 62 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-------KKCPI--CRVDIE 62 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-------SBCTT--TCSBSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-------CCCcC--cCcccc
Confidence 34568899999987543 45567999999999999998753 25998 887764
No 41
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=2.6e-06 Score=67.83 Aligned_cols=49 Identities=29% Similarity=0.640 Sum_probs=39.7
Q ss_pred CCccccccccccccCCCCeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccc
Q 009997 201 DKSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 260 (520)
Q Consensus 201 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 260 (520)
....++|+||++.+..+ +.++|||.||..|+..|+.. ...||. |+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~-------~~~CP~--Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNP--VVTKCRHYFCESCALEHFRA-------TPRCYI--CDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSE--EECTTSCEEEHHHHHHHHHH-------CSBCSS--SCCBCC
T ss_pred CCCCCCCcCCCchhcCe--eEccCCCHhHHHHHHHHHHC-------CCcCCC--cCcccc
Confidence 34578999999987543 56799999999999999974 347999 988875
No 42
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.13 E-value=1.4e-06 Score=71.15 Aligned_cols=49 Identities=22% Similarity=0.571 Sum_probs=39.4
Q ss_pred CccccccccccccCCCCeeecc-CCCcccHHHHHHHHHHhhhCCCCccccCCCCcCccc
Q 009997 202 KSPENCSICCEDKPYPMMITMK-CSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFI 259 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l 259 (520)
...++|+||++.+..+ +.++ |||.||..|+..|+... + ...||. |+..+
T Consensus 11 ~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~---~--~~~CP~--Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA--VVIPCCGNSYCDECIRTALLES---D--EHTCPT--CHQND 60 (92)
T ss_dssp CTTTEETTTTEECSSC--EECTTTCCEECHHHHHHHHHHC---T--TCCCTT--TCCSS
T ss_pred CcCCCCCCCChhhcCc--eECCCCCCHHHHHHHHHHHHhc---C--CCcCcC--CCCcC
Confidence 4578999999988654 6677 99999999999998742 1 357999 88876
No 43
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.13 E-value=1.8e-06 Score=71.72 Aligned_cols=54 Identities=24% Similarity=0.528 Sum_probs=43.0
Q ss_pred ccccccccccccCCCCeee-ccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchHHHhh
Q 009997 203 SPENCSICCEDKPYPMMIT-MKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVECKS 266 (520)
Q Consensus 203 ~~~~C~IC~e~~~~~~~~~-l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~i~~ 266 (520)
..++|+||++.+.. .+. ++|||.||..|+..|+... ...||. |+..+....+..
T Consensus 21 ~~~~C~IC~~~~~~--p~~~~~CgH~FC~~Ci~~~~~~~------~~~CP~--Cr~~~~~~~l~~ 75 (100)
T 3lrq_A 21 EVFRCFICMEKLRD--ARLCPHCSKLCCFSCIRRWLTEQ------RAQCPH--CRAPLQLRELVN 75 (100)
T ss_dssp HHTBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHHHT------CSBCTT--TCCBCCGGGCEE
T ss_pred CCCCCccCCccccC--ccccCCCCChhhHHHHHHHHHHC------cCCCCC--CCCcCCHHHhHh
Confidence 36889999998864 366 7999999999999999854 157999 999987755443
No 44
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.13 E-value=1.7e-06 Score=68.55 Aligned_cols=53 Identities=19% Similarity=0.453 Sum_probs=39.2
Q ss_pred CccccccccccccCCCCeee--ccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchH
Q 009997 202 KSPENCSICCEDKPYPMMIT--MKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTV 262 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~~~~~--l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~ 262 (520)
....+|+||++.+...+... +.|||.||..|+.+++.. ....||. |+..+...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~------~~~~CP~--CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD------ENGLCPA--CRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS------SCSBCTT--TCCBCSSC
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc------CCCCCCC--CCCccCCC
Confidence 45689999999875443333 359999999999988642 2457999 98887653
No 45
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.12 E-value=3.1e-06 Score=66.22 Aligned_cols=50 Identities=22% Similarity=0.534 Sum_probs=39.6
Q ss_pred CCccccccccccccCCCCeeecc-CCCcccHHHHHHHHHHhhhCCCCccccCCCCcCccc
Q 009997 201 DKSPENCSICCEDKPYPMMITMK-CSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFI 259 (520)
Q Consensus 201 ~~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l 259 (520)
....++|+||++.+..+ +.++ |||.||..|+..|+... + ...||. |+..+
T Consensus 12 ~~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~---~--~~~CP~--Cr~~~ 62 (74)
T 2yur_A 12 IPDELLCLICKDIMTDA--VVIPCCGNSYCDECIRTALLES---D--EHTCPT--CHQND 62 (74)
T ss_dssp SCGGGSCSSSCCCCTTC--EECSSSCCEECTTHHHHHHHHS---S--SSCCSS--SCCSS
T ss_pred CCCCCCCcCCChHHhCC--eEcCCCCCHHHHHHHHHHHHhc---C--CCcCCC--CCCcC
Confidence 34578999999988654 5687 99999999999999853 1 357999 88753
No 46
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.12 E-value=1e-06 Score=69.56 Aligned_cols=50 Identities=14% Similarity=0.325 Sum_probs=40.2
Q ss_pred ccccccccccccCCCCeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchH
Q 009997 203 SPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTV 262 (520)
Q Consensus 203 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~ 262 (520)
..+.|+||++.+..+ +.++|||.||..|+..|+.. + ...||. |+..+...
T Consensus 7 ~~~~C~IC~~~~~~P--v~~~CgH~fc~~Ci~~~~~~----~--~~~CP~--C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMKDP--VIVSTGQTYERSSIQKWLDA----G--HKTCPK--SQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCSSE--EEETTTEEEEHHHHHHHHTT----T--CCBCTT--TCCBCSSC
T ss_pred ccCCCCCccccccCC--EEcCCCCeecHHHHHHHHHH----C--cCCCCC--CcCCCChh
Confidence 478999999987644 66799999999999999862 1 357998 98887654
No 47
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=1.6e-06 Score=66.54 Aligned_cols=51 Identities=27% Similarity=0.789 Sum_probs=39.3
Q ss_pred CCccccccccccccCCC-----CeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccc
Q 009997 201 DKSPENCSICCEDKPYP-----MMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 260 (520)
Q Consensus 201 ~~~~~~C~IC~e~~~~~-----~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 260 (520)
.....+|+||++.+... ..+.++|+|.||..|+..|+.. ...||. |+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-------~~~CP~--Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-------ANTCPT--CRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-------CSSCTT--TCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-------CCCCCC--CCCccC
Confidence 44578999999986532 2255699999999999999875 237998 887764
No 48
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=4e-06 Score=61.89 Aligned_cols=45 Identities=27% Similarity=0.790 Sum_probs=34.9
Q ss_pred CccccccccccccCCCCeeeccCCCcccHHHHHHHHHHhhhCCCCccccCC
Q 009997 202 KSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQ 252 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~ 252 (520)
....+|+||++.+..+ +.++|+|.||..|+.+|+... ....+||.
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~~----~~~~~CP~ 57 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP--VIIECGHNFCKACITRWWEDL----ERDFPCPV 57 (58)
T ss_dssp CCCCBCSSSCCBCSSC--CCCSSCCCCCHHHHHHHTTSS----CCSCCCSC
T ss_pred ccCCCCccCCcccCcc--EeCCCCCccCHHHHHHHHHhc----CCCCCCCC
Confidence 4568999999988655 457999999999999997531 12457886
No 49
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.05 E-value=4.8e-06 Score=68.40 Aligned_cols=58 Identities=22% Similarity=0.462 Sum_probs=44.4
Q ss_pred CccccccccccccCCCCeeec-cCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcc-cchH
Q 009997 202 KSPENCSICCEDKPYPMMITM-KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYF-ISTV 262 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~-l~~~ 262 (520)
...+.|+||++.+..+ +.+ .|||.||+.|+..|+...-. +.....||..+|... +...
T Consensus 5 ~~~~~CPI~~~~~~dP--V~~~~cGh~f~r~cI~~~l~~~~~-~~~~~~CP~tgc~~~~l~~~ 64 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP--VKNKVCGHTYEEDAIVRMIESRQK-RKKKAYCPQIGCSHTDIRKS 64 (94)
T ss_dssp SSCCBCTTTCSBCSSE--EEESSSCCEEEHHHHHHHHHHHHT-TTCCBCCCSTTCCCCCBCGG
T ss_pred CcEeECcCcCchhcCC--EEcCCCCCeecHHHHHHHHHHccC-cCCCCCCCcCcCcccccCHh
Confidence 3568999999887644 667 59999999999999986421 123568999999876 6653
No 50
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=5.4e-06 Score=64.60 Aligned_cols=50 Identities=24% Similarity=0.564 Sum_probs=39.5
Q ss_pred CccccccccccccCCCC-eeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccc
Q 009997 202 KSPENCSICCEDKPYPM-MITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 260 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~~-~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 260 (520)
....+|+||++.+.... ...++|+|.||..|+.+|+... ..||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-------~~CP~--Cr~~~~ 63 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-------KVCPL--CNMPVL 63 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-------SBCTT--TCCBCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-------CcCCC--cCcccc
Confidence 45689999999986554 3445999999999999999753 26998 887764
No 51
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.01 E-value=2.2e-06 Score=67.67 Aligned_cols=54 Identities=22% Similarity=0.567 Sum_probs=41.8
Q ss_pred CCccccccccccccCCCC-eeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchHH
Q 009997 201 DKSPENCSICCEDKPYPM-MITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVE 263 (520)
Q Consensus 201 ~~~~~~C~IC~e~~~~~~-~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~ 263 (520)
.....+|+||++.+.... ...++|+|.||..|+.+|+... ..||. |+..+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-------~~CP~--Cr~~~~~~~ 66 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-------DSCPV--CRKSLTGQN 66 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-------CSCTT--TCCCCCCSC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-------CcCcC--cCCccCCcc
Confidence 345789999999987554 3456999999999999998532 37998 988876543
No 52
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.99 E-value=4e-06 Score=72.47 Aligned_cols=48 Identities=29% Similarity=0.690 Sum_probs=39.1
Q ss_pred cccccccccccCCCCeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccch
Q 009997 204 PENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIST 261 (520)
Q Consensus 204 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 261 (520)
.++|+||++.+..+ +.++|||.||..|+..|+.. ....||. |+..+..
T Consensus 52 ~~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~------~~~~CP~--Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRP--ITTVCQHNVCKDCLDRSFRA------QVFSCPA--CRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSE--EECTTSCEEEHHHHHHHHHT------TCCBCTT--TCCBCCT
T ss_pred CCCCCcCChHHcCc--EEeeCCCcccHHHHHHHHhH------CcCCCCC--CCccCCC
Confidence 57899999988644 66799999999999999872 1347998 9888765
No 53
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.97 E-value=4.4e-06 Score=65.36 Aligned_cols=51 Identities=20% Similarity=0.571 Sum_probs=40.1
Q ss_pred CccccccccccccCCCCe-eeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccch
Q 009997 202 KSPENCSICCEDKPYPMM-ITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIST 261 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~~~-~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 261 (520)
....+|+||++.+..... ..++|+|.||..|+..|+... ..||. |+..+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-------~~CP~--Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-------RTCPI--CRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-------SSCTT--TCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-------CcCcC--cCCcCCC
Confidence 456789999999865544 456999999999999998753 36998 8877653
No 54
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.96 E-value=5.5e-06 Score=68.52 Aligned_cols=49 Identities=29% Similarity=0.780 Sum_probs=39.5
Q ss_pred cccccccccccCCCCeeec-cCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchHH
Q 009997 204 PENCSICCEDKPYPMMITM-KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVE 263 (520)
Q Consensus 204 ~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~ 263 (520)
.++|+||++.+..+ +.+ +|||.||..|+..|+.. ...||. |+..+....
T Consensus 22 ~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~-------~~~CP~--Cr~~~~~~~ 71 (99)
T 2y43_A 22 LLRCGICFEYFNIA--MIIPQCSHNYCSLCIRKFLSY-------KTQCPT--CCVTVTEPD 71 (99)
T ss_dssp HTBCTTTCSBCSSE--EECTTTCCEEEHHHHHHHHTT-------CCBCTT--TCCBCCGGG
T ss_pred CCCcccCChhhCCc--CEECCCCCHhhHHHHHHHHHC-------CCCCCC--CCCcCChhh
Confidence 57899999988643 455 89999999999999873 247998 998887643
No 55
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.96 E-value=1.3e-06 Score=74.54 Aligned_cols=50 Identities=30% Similarity=0.772 Sum_probs=39.8
Q ss_pred CccccccccccccCCCCeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccch
Q 009997 202 KSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIST 261 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 261 (520)
...++|+||++.+..+ +.++|||.||..|+..|+.. ....||. |+..+..
T Consensus 13 ~~~~~C~iC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~------~~~~CP~--Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEP--VTLPCNHTLCKPCFQSTVEK------ASLCCPF--CRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSC--EECTTSCEECHHHHCCCCCT------TTSBCTT--TCCBCHH
T ss_pred CCCCCCccCCcccCce--eEcCCCCHHhHHHHHHHHhH------CcCCCCC--CCcccCc
Confidence 3468999999987644 66799999999999988752 1357998 9988875
No 56
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.95 E-value=1.9e-06 Score=63.61 Aligned_cols=46 Identities=24% Similarity=0.617 Sum_probs=36.7
Q ss_pred CccccccccccccCCCCeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccch
Q 009997 202 KSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIST 261 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 261 (520)
....+|+||++.+..+ +.++|||.||..|+.. +.+.||. |+..+..
T Consensus 4 ~~~~~C~IC~~~~~~p--~~l~CgH~fC~~Ci~~----------~~~~CP~--Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP--KLLPCLHTLCSGCLEA----------SGMQCPI--CQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCC--SCSTTSCCSBTTTCSS----------SSSSCSS--CCSSSSC
T ss_pred ccCCCceEeCCccCCe--EEcCCCCcccHHHHcc----------CCCCCCc--CCcEeec
Confidence 4578899999988755 5579999999999876 3568998 8876653
No 57
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.90 E-value=3.6e-06 Score=74.21 Aligned_cols=46 Identities=35% Similarity=0.823 Sum_probs=36.8
Q ss_pred cccccccccccCCCCeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccc
Q 009997 204 PENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 260 (520)
Q Consensus 204 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 260 (520)
.++|+||++.+.. .+.++|||.||..|+..|+.. ...||. |+..+.
T Consensus 53 ~~~C~iC~~~~~~--~~~~~CgH~fc~~Ci~~~~~~-------~~~CP~--Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYFIE--AVTLNCAHSFCSYCINEWMKR-------KIECPI--CRKDIK 98 (138)
T ss_dssp HSBCTTTCSBCSS--EEEETTSCEEEHHHHHHHTTT-------CSBCTT--TCCBCC
T ss_pred cCCCcccCcccCC--ceECCCCCCccHHHHHHHHHc-------CCcCCC--CCCcCC
Confidence 4689999998754 366899999999999999753 246998 887764
No 58
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.89 E-value=4.5e-06 Score=61.00 Aligned_cols=49 Identities=18% Similarity=0.588 Sum_probs=37.4
Q ss_pred ccccccccccccCCCC-eeecc-CCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccc
Q 009997 203 SPENCSICCEDKPYPM-MITMK-CSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 260 (520)
Q Consensus 203 ~~~~C~IC~e~~~~~~-~~~l~-CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 260 (520)
...+|+||++.+...+ ...++ |+|.||..|+.+|++. ...||. |+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-------~~~CP~--Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-------HSTCPL--CRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-------CCSCSS--SCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-------CCcCcC--CCCEeE
Confidence 3578999999986543 45565 9999999999999753 236998 877653
No 59
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.86 E-value=2e-06 Score=66.34 Aligned_cols=48 Identities=27% Similarity=0.864 Sum_probs=37.8
Q ss_pred CccccccccccccCCCCeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccch
Q 009997 202 KSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIST 261 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 261 (520)
....+|+||++.+.. +.++|+|.||..|+..|+.. ...||. |+..+..
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~CgH~fc~~Ci~~~~~~-------~~~CP~--Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRAD---LILPCAHSFCQKCIDKWSDR-------HRNCPI--CRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCCS---EEETTTEEECHHHHHHSSCC-------CSSCHH--HHHCTTC
T ss_pred CCCCCCeeCCcCccC---cccCCCCcccHHHHHHHHHC-------cCcCCC--cCCcccC
Confidence 456899999998754 66799999999999998751 347998 8766553
No 60
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.85 E-value=1.1e-05 Score=65.71 Aligned_cols=51 Identities=22% Similarity=0.625 Sum_probs=39.8
Q ss_pred CccccccccccccCCCC-eeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccch
Q 009997 202 KSPENCSICCEDKPYPM-MITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIST 261 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~~-~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 261 (520)
....+|+||++.+.... ...++|+|.||..|+..|+... ..||. |+..++.
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~-------~~CP~--Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS-------GTCPV--CRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT-------CBCTT--TCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC-------CcCcC--cCccCCC
Confidence 45688999999986544 4556999999999999998532 37999 8887653
No 61
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.85 E-value=6.7e-06 Score=69.18 Aligned_cols=48 Identities=25% Similarity=0.648 Sum_probs=38.6
Q ss_pred ccccccccccccCCCCeeec-cCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccch
Q 009997 203 SPENCSICCEDKPYPMMITM-KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIST 261 (520)
Q Consensus 203 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 261 (520)
..++|+||++.+..+ +.+ +|||.||..|+..|+... ..||. |+..+..
T Consensus 14 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~-------~~CP~--Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA--TTIIECLHSFCKTCIVRYLETS-------KYCPI--CDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHTSC-------SBCTT--TCCBSCS
T ss_pred CcCCCccCChHHhCc--CEeCCCCChhhHHHHHHHHHhC-------CcCcC--CCccccc
Confidence 468899999987643 566 999999999999998642 57998 8877654
No 62
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.82 E-value=1.3e-05 Score=71.71 Aligned_cols=49 Identities=24% Similarity=0.598 Sum_probs=39.9
Q ss_pred cccccccccccCCCCeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchH
Q 009997 204 PENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTV 262 (520)
Q Consensus 204 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~ 262 (520)
.++|+||++.+..+ +.++|||.||..|+..|+.. ....||. |...+...
T Consensus 78 ~~~C~IC~~~~~~p--v~~~CgH~fC~~Ci~~~~~~------~~~~CP~--Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQP--VTTECFHNVCKDCLQRSFKA------QVFSCPA--CRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSE--EECTTSCEEEHHHHHHHHHT------TCCBCTT--TCCBCCTT
T ss_pred CCEeecCChhhcCC--EEcCCCCchhHHHHHHHHHh------CCCcCCC--CCccCCCC
Confidence 57899999987644 66899999999999999973 1357999 98887764
No 63
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.81 E-value=3.9e-05 Score=61.66 Aligned_cols=49 Identities=4% Similarity=-0.047 Sum_probs=40.6
Q ss_pred ccccccccccccCCCCeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchH
Q 009997 203 SPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTV 262 (520)
Q Consensus 203 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~ 262 (520)
..+.|+||++-+..+ +.++|||.||+.|+..|+.. ...||. |+..+...
T Consensus 13 ~~~~CpI~~~~m~dP--V~~~cGhtf~r~~I~~~l~~-------~~~cP~--~~~~l~~~ 61 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDP--VRLPSGTVMDRSIILRHLLN-------SPTDPF--NRQMLTES 61 (85)
T ss_dssp TTTBCTTTCSBCSSE--EECTTSCEEEHHHHHHHHHH-------CSBCTT--TCCBCCGG
T ss_pred hheECcccCchhcCC--eECCCCCEECHHHHHHHHhc-------CCCCCC--CcCCCChH
Confidence 479999999887655 77899999999999999984 247998 88887764
No 64
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.79 E-value=1.3e-05 Score=61.25 Aligned_cols=48 Identities=33% Similarity=0.800 Sum_probs=37.8
Q ss_pred ccccccccccccCCCCeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccc
Q 009997 203 SPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 260 (520)
Q Consensus 203 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 260 (520)
...+|+||++.+..+ .+.++|||.||..|+..|+... ..||. |+..+.
T Consensus 4 ~~~~C~IC~~~~~~~-~~~~~C~H~fc~~Ci~~~~~~~-------~~CP~--Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNY-SMALPCLHAFCYVCITRWIRQN-------PTCPL--CKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSC-EEETTTTEEESTTHHHHHHHHS-------CSTTT--TCCCCC
T ss_pred CCCCCeeCCccccCC-cEecCCCCeeHHHHHHHHHhCc-------CcCcC--CChhhH
Confidence 357899999987532 3567999999999999998642 37998 887765
No 65
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.71 E-value=3.8e-05 Score=65.06 Aligned_cols=53 Identities=28% Similarity=0.567 Sum_probs=38.3
Q ss_pred cccccccccccCCCC---------------ee-eccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccc
Q 009997 204 PENCSICCEDKPYPM---------------MI-TMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 260 (520)
Q Consensus 204 ~~~C~IC~e~~~~~~---------------~~-~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 260 (520)
..+|+||++.+.... .+ .++|+|.||..||..|+...- ......||. |+..+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~--~~~~~~CP~--CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN--KDGSLQCPS--CKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC--CSSCCBCTT--TCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc--CCCCCcCCC--CCCccC
Confidence 468999999975421 12 459999999999999985422 123457999 887664
No 66
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.71 E-value=1.1e-05 Score=69.02 Aligned_cols=45 Identities=31% Similarity=0.665 Sum_probs=37.5
Q ss_pred cccccccccccCCCCeeec-cCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccch
Q 009997 204 PENCSICCEDKPYPMMITM-KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIST 261 (520)
Q Consensus 204 ~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 261 (520)
.++|+||++.+..+ +.+ +|||.||..|+..|+. ..||. |+..+..
T Consensus 22 ~~~C~IC~~~~~~p--v~~~~CgH~fC~~Ci~~~~~---------~~CP~--Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNILREP--VCLGGCEHIFCSNCVSDCIG---------TGCPV--CYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCCSSC--BCCCSSSCCBCTTTGGGGTT---------TBCSS--SCCBCSC
T ss_pred CCCCCCCChHhhCc--cEeCCCCCHHHHHHHHHHhc---------CCCcC--CCCcCcc
Confidence 68899999988654 667 9999999999999875 47998 9888754
No 67
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.65 E-value=3e-05 Score=74.72 Aligned_cols=56 Identities=29% Similarity=0.623 Sum_probs=44.1
Q ss_pred CCccccccccccccCCCCeee-ccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchHH
Q 009997 201 DKSPENCSICCEDKPYPMMIT-MKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVE 263 (520)
Q Consensus 201 ~~~~~~C~IC~e~~~~~~~~~-l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~ 263 (520)
....+.|+||++.+..+ ++ ..|||.||+.|+..|+... ....||..||+..+....
T Consensus 178 ~~~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~-----~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 178 GKIELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGY-----TTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp SBCCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTC-----SCEECSGGGCSCEECGGG
T ss_pred CceeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhC-----CCCCCCcccccCcCchhh
Confidence 34578999999987644 55 4999999999999998631 235799999999887644
No 68
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.57 E-value=2.2e-05 Score=65.20 Aligned_cols=49 Identities=4% Similarity=-0.076 Sum_probs=40.1
Q ss_pred ccccccccccccCCCCeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchH
Q 009997 203 SPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTV 262 (520)
Q Consensus 203 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~ 262 (520)
..+.|+||++-+..+ +.++|||.||+.|+..|+.. ...||. |+..+...
T Consensus 28 ~~~~CpI~~~~m~dP--V~~~cGhtf~r~~I~~~l~~-------~~~cP~--~~~~l~~~ 76 (100)
T 2kre_A 28 DEFRDPLMDTLMTDP--VRLPSGTIMDRSIILRHLLN-------SPTDPF--NRQTLTES 76 (100)
T ss_dssp TTTBCTTTCSBCSSE--EEETTTEEEEHHHHHHHTTS-------CSBCSS--SCCBCCTT
T ss_pred HhhCCcCccCcccCC--eECCCCCEEchHHHHHHHHc-------CCCCCC--CCCCCChh
Confidence 479999999887655 77899999999999999863 247998 88887753
No 69
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.56 E-value=4.8e-05 Score=62.88 Aligned_cols=49 Identities=8% Similarity=-0.099 Sum_probs=40.3
Q ss_pred ccccccccccccCCCCeeeccCC-CcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchH
Q 009997 203 SPENCSICCEDKPYPMMITMKCS-HKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTV 262 (520)
Q Consensus 203 ~~~~C~IC~e~~~~~~~~~l~Cg-H~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~ 262 (520)
..+.|+||++-+..+ +.++|| |.||+.|+..|+.. ...||. |+..+...
T Consensus 21 ~~~~CpI~~~~m~dP--V~~~cG~htf~r~cI~~~l~~-------~~~cP~--~~~~l~~~ 70 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDP--VVLPSSRVTVDRSTIARHLLS-------DQTDPF--NRSPLTMD 70 (98)
T ss_dssp TTTBCTTTCSBCSSE--EECTTTCCEEEHHHHHHHTTT-------SCBCTT--TCSBCCTT
T ss_pred HhcCCcCccccccCC--eECCCCCeEECHHHHHHHHHh-------CCCCCC--CCCCCChh
Confidence 479999999887655 778999 99999999999873 237998 88887753
No 70
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.55 E-value=4.5e-05 Score=69.15 Aligned_cols=48 Identities=29% Similarity=0.714 Sum_probs=38.4
Q ss_pred ccccccccccccCCCCeeec-cCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccc
Q 009997 203 SPENCSICCEDKPYPMMITM-KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 260 (520)
Q Consensus 203 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 260 (520)
..+.|+||++.+..+ +.+ +|||.||..|+..|+... ...||. |+..+.
T Consensus 53 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~------~~~CP~--Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNT--MTTKECLHRFCADCIITALRSG------NKECPT--CRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHHTT------CCBCTT--TCCBCC
T ss_pred CCCCCcccChHhhCc--CEeCCCCChhHHHHHHHHHHhC------cCCCCC--CCCcCC
Confidence 467999999987643 555 999999999999998731 357999 988774
No 71
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.52 E-value=3.1e-05 Score=61.63 Aligned_cols=51 Identities=24% Similarity=0.569 Sum_probs=37.1
Q ss_pred CccccccccccccCC-----------CC-eeec-cCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccch
Q 009997 202 KSPENCSICCEDKPY-----------PM-MITM-KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIST 261 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~-----------~~-~~~l-~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 261 (520)
....+|+||++.+.. .+ .+.+ .|+|.||.+|+.+|+... -.||. |+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-------~~CP~--CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-------NRCPL--CQQDWVV 76 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-------CBCTT--TCCBCCE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-------CCCCC--cCCCcch
Confidence 345678888887743 22 3445 699999999999998642 27999 9887654
No 72
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=97.47 E-value=3.1e-05 Score=62.39 Aligned_cols=47 Identities=21% Similarity=0.586 Sum_probs=37.9
Q ss_pred CCccCccccceeeecCCcceEEec-ccccccccccccccCCCCcccCC
Q 009997 372 RWRRCQQCRRMIELTHGCYHMTCW-CGHEFCYSCGAEYRDGQQTCQCA 418 (520)
Q Consensus 372 ~~k~CP~C~~~IeK~~GCnhMtC~-Cg~~FCy~C~~~~~~~~~~c~C~ 418 (520)
..+-||.|...+....+-..++|. |++.||+.|+.+|...|....|.
T Consensus 24 ~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~ 71 (86)
T 2ct7_A 24 KFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCE 71 (86)
T ss_dssp CEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTTTSCHH
T ss_pred CEeECcCCCchheecCCCCceEeCCCCCccccccCCchhhcCCCCChH
Confidence 346699999999888888889996 99999999999994444444454
No 73
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.42 E-value=4.9e-05 Score=59.32 Aligned_cols=42 Identities=26% Similarity=0.757 Sum_probs=34.0
Q ss_pred cccccccccccCCCCeeeccCCCc-ccHHHHHHHHHHhhhCCCCccccCCCCcCcccc
Q 009997 204 PENCSICCEDKPYPMMITMKCSHK-FCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 260 (520)
Q Consensus 204 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 260 (520)
..+|.||++... +.+.++|||. ||..|+..+ .+||. |+..+.
T Consensus 24 ~~~C~iC~~~~~--~~~~~pCgH~~~C~~C~~~~-----------~~CP~--Cr~~i~ 66 (74)
T 4ic3_A 24 EKLCKICMDRNI--AIVFVPCGHLVTCKQCAEAV-----------DKCPM--CYTVIT 66 (74)
T ss_dssp HTBCTTTSSSBC--CEEEETTCCBCCCHHHHTTC-----------SBCTT--TCCBCS
T ss_pred CCCCCCCCCCCC--CEEEcCCCChhHHHHhhhcC-----------ccCCC--cCcCcc
Confidence 578999998764 3466799999 999998866 47998 888765
No 74
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.37 E-value=0.00014 Score=71.28 Aligned_cols=51 Identities=8% Similarity=-0.074 Sum_probs=41.1
Q ss_pred CccccccccccccCCCCeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchH
Q 009997 202 KSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTV 262 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~ 262 (520)
...+.|+||++.+..+ +.++|||.||+.|+..|+... ...||. |+..++..
T Consensus 206 ~~~~~c~i~~~~~~dP--v~~~~gh~f~~~~i~~~~~~~------~~~cP~--~~~~~~~~ 256 (281)
T 2c2l_A 206 PDYLCGKISFELMREP--CITPSGITYDRKDIEEHLQRV------GHFNPV--TRSPLTQE 256 (281)
T ss_dssp CSTTBCTTTCSBCSSE--EECSSCCEEETTHHHHHHHHT------CSSCTT--TCCCCCGG
T ss_pred CcccCCcCcCCHhcCC--eECCCCCEECHHHHHHHHHHC------CCCCcC--CCCCCchh
Confidence 4579999999987655 778999999999999999742 123998 98888754
No 75
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.31 E-value=0.0001 Score=57.62 Aligned_cols=43 Identities=26% Similarity=0.711 Sum_probs=33.2
Q ss_pred cccccccccccCCCCeeeccCCCc-ccHHHHHHHHHHhhhCCCCccccCCCCcCcccch
Q 009997 204 PENCSICCEDKPYPMMITMKCSHK-FCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIST 261 (520)
Q Consensus 204 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 261 (520)
..+|+||++.+.. .+.++|||. ||..|+... .+||. |+..+..
T Consensus 25 ~~~C~IC~~~~~~--~~~~pCgH~~~C~~C~~~~-----------~~CP~--Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIA--IVFVPCGHLVTCKQCAEAV-----------DKCPM--CYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCC--BCCSSSCCCCBCHHHHHHC-----------SBCTT--TCCBCCC
T ss_pred CCCCCcCCCCCCC--EEEecCCCHHHHHHHhhCC-----------CCCcc--CCceecC
Confidence 5689999987643 355799999 999999531 47999 8887653
No 76
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.29 E-value=0.00012 Score=55.22 Aligned_cols=50 Identities=28% Similarity=0.523 Sum_probs=36.9
Q ss_pred CccccccccccccCCCCeeeccCCCc-ccHHHHHHHHHHhhhCCCCccccCCCCcCcccc
Q 009997 202 KSPENCSICCEDKPYPMMITMKCSHK-FCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 260 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 260 (520)
....+|.||++.....-++.++|||. ||..|..++.+.. -+||. |...+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-------~~CPi--CR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG-------ASCPI--CKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT-------CBCTT--TCCBCC
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC-------CcCCC--cCchhh
Confidence 34678999998765443333499998 9999999876531 36998 888764
No 77
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.29 E-value=0.00029 Score=55.80 Aligned_cols=54 Identities=22% Similarity=0.463 Sum_probs=41.0
Q ss_pred CCccccccccccccCCCCeeeccCC-----CcccHHHHHHHHHHhhhCCCCccccCCCCcCcccch
Q 009997 201 DKSPENCSICCEDKPYPMMITMKCS-----HKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIST 261 (520)
Q Consensus 201 ~~~~~~C~IC~e~~~~~~~~~l~Cg-----H~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 261 (520)
......|.||++++...+...++|. |.|+.+||.+|+...- ...||. |+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~-----~~~Cpl--Cr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD-----TRCCEL--CKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC-----CSBCSS--SCCBCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC-----CCCCCC--CCCeeec
Confidence 3456789999998764443446885 9999999999998641 357999 9887754
No 78
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.27 E-value=0.00012 Score=55.45 Aligned_cols=49 Identities=24% Similarity=0.484 Sum_probs=36.0
Q ss_pred ccccccccccccCCCCeeeccCCCc-ccHHHHHHHHHHhhhCCCCccccCCCCcCcccc
Q 009997 203 SPENCSICCEDKPYPMMITMKCSHK-FCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 260 (520)
Q Consensus 203 ~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 260 (520)
...+|.||++.....-+..++|||. ||.+|+..+... .-+||. |...+.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-------~~~CPi--CR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-------NKPCPV--CRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-------TCCCTT--TCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-------CCcCCC--cCcchh
Confidence 4578999998765432223399999 899999988752 136998 888764
No 79
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.26 E-value=0.00072 Score=61.90 Aligned_cols=51 Identities=8% Similarity=-0.070 Sum_probs=41.0
Q ss_pred CccccccccccccCCCCeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchH
Q 009997 202 KSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTV 262 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~ 262 (520)
...+.|+||++-+..+ +.++|||.||+.|+..|+... + . .||. |+..++..
T Consensus 104 p~~f~CPI~~elm~DP--V~~~~Ghtfer~~I~~~l~~~---~--~-tcP~--t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMREP--CITPSGITYDRKDIEEHLQRV---G--H-FDPV--TRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCSSE--EECTTSCEEEHHHHHHHHHHT---C--S-BCTT--TCCBCCGG
T ss_pred cHhhcccCccccCCCC--eECCCCCEECHHHHHHHHHhC---C--C-CCCC--CcCCCChh
Confidence 3579999999887654 677999999999999999752 2 2 5998 88888764
No 80
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.22 E-value=0.00011 Score=63.56 Aligned_cols=56 Identities=25% Similarity=0.712 Sum_probs=43.3
Q ss_pred CccccccccccccCCC-----CeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchHHHhh
Q 009997 202 KSPENCSICCEDKPYP-----MMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVECKS 266 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~-----~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~i~~ 266 (520)
.....|+||++.+... ..+.++|||.||..|+..|++.. -.||. |+..+..+.+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-------~~CP~--Cr~~~~~~~~~~ 130 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-------NTCPT--CRKKINHKRYHP 130 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-------SBCTT--TCCBCCGGGEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-------CCCCC--CCCcCChhccee
Confidence 4578899999886431 22556999999999999998753 27999 999988776554
No 81
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.17 E-value=0.00028 Score=59.10 Aligned_cols=49 Identities=22% Similarity=0.427 Sum_probs=37.3
Q ss_pred ccccccccccccCCC----------------CeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccc
Q 009997 203 SPENCSICCEDKPYP----------------MMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 260 (520)
Q Consensus 203 ~~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 260 (520)
...+|+||++.+... ..+.++|+|.|+..|+..|+.. ...||. |+..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-------~~~CP~--Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-------RQVCPL--DNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-------CSBCSS--SCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-------CCcCcC--CCCcce
Confidence 356799999887643 1344699999999999999864 236998 888754
No 82
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.08 E-value=0.00045 Score=52.88 Aligned_cols=46 Identities=22% Similarity=0.875 Sum_probs=35.3
Q ss_pred CCccccccccccccCCCCeeeccCCCc-ccHHHHHHHHHHhhhCCCCccccCCCCcCcccch
Q 009997 201 DKSPENCSICCEDKPYPMMITMKCSHK-FCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIST 261 (520)
Q Consensus 201 ~~~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 261 (520)
......|.||++... +.+.++|+|. ||..|+... -+||. |...+..
T Consensus 12 ~~~~~~C~IC~~~~~--~~v~~pCgH~~~C~~C~~~~-----------~~CP~--CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTV--NWVLLPCRHTCLCDGCVKYF-----------QQCPM--CRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCC--CCEETTTTBCCSCTTHHHHC-----------SSCTT--TCCCCCC
T ss_pred CCCCCCCCCcCcCCC--CEEEECCCChhhhHHHHhcC-----------CCCCC--CCcchhc
Confidence 345689999998764 3466799999 999999831 36998 8887653
No 83
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.06 E-value=0.00039 Score=71.10 Aligned_cols=48 Identities=25% Similarity=0.685 Sum_probs=38.3
Q ss_pred cccccccccccCCCCeeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccch
Q 009997 204 PENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIST 261 (520)
Q Consensus 204 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 261 (520)
..+|+||++... +.+.++|||.||..|+..|+... ...||. |+..+..
T Consensus 332 ~~~C~ICle~~~--~pv~lpCGH~FC~~Ci~~wl~~~------~~~CP~--CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDK--DVKIEPCGHLMCTSCLTSWQESE------GQGCPF--CRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBC--CEEEETTCCEECHHHHHHHHHHT------CSBCTT--TCCBCCE
T ss_pred CCCCCccCcCCC--CeEEeCCCChhhHHHHHHHHhcC------CCCCCC--CCCccCC
Confidence 478999998874 34667999999999999998741 347998 9887765
No 84
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=97.00 E-value=0.00022 Score=56.54 Aligned_cols=38 Identities=26% Similarity=0.632 Sum_probs=35.3
Q ss_pred CccCcc--ccceeeecCCcceEEe------cccccccccccccccC
Q 009997 373 WRRCQQ--CRRMIELTHGCYHMTC------WCGHEFCYSCGAEYRD 410 (520)
Q Consensus 373 ~k~CP~--C~~~IeK~~GCnhMtC------~Cg~~FCy~C~~~~~~ 410 (520)
.+-||+ |+..|....+...++| .||+.||+.|+..|+.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 588998 9999999899999999 6999999999999975
No 85
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=96.90 E-value=0.00026 Score=55.97 Aligned_cols=43 Identities=26% Similarity=0.736 Sum_probs=33.9
Q ss_pred cccccccccccCCCCeeeccCCCc-ccHHHHHHHHHHhhhCCCCccccCCCCcCcccch
Q 009997 204 PENCSICCEDKPYPMMITMKCSHK-FCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIST 261 (520)
Q Consensus 204 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 261 (520)
..+|.||++... +.+.++|||. ||..|+..+ ..||. |+..+..
T Consensus 18 ~~~C~IC~~~~~--~~v~~pCgH~~~C~~C~~~~-----------~~CP~--Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEI--NSTFCPCGHTVCCESCAAQL-----------QSCPV--CRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBC--CEEEETTCBCCBCHHHHTTC-----------SBCTT--TCCBCCE
T ss_pred CCEeEEeCcccC--cEEEECCCCHHHHHHHHHhc-----------CcCCC--CCchhhC
Confidence 467999998764 4466799999 999999754 17998 9887764
No 86
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.51 E-value=0.00048 Score=58.64 Aligned_cols=48 Identities=23% Similarity=0.458 Sum_probs=0.4
Q ss_pred cccccccccccCCC--------------C--eeeccCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccc
Q 009997 204 PENCSICCEDKPYP--------------M--MITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 260 (520)
Q Consensus 204 ~~~C~IC~e~~~~~--------------~--~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 260 (520)
..+|+||++.+... + .+.++|+|.|+..|+..|+... -.||. |...+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~-------~~CP~--Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-------QVCPL--DNREWE 111 (117)
T ss_dssp C------------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC-------CcCCC--CCCeee
Confidence 46899999987532 1 1224899999999999998752 26998 877654
No 87
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=95.95 E-value=0.0016 Score=65.97 Aligned_cols=42 Identities=24% Similarity=0.821 Sum_probs=34.1
Q ss_pred cccccccccccCCCCeeeccCCCc-ccHHHHHHHHHHhhhCCCCccccCCCCcCcccc
Q 009997 204 PENCSICCEDKPYPMMITMKCSHK-FCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 260 (520)
Q Consensus 204 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 260 (520)
...|+||++.+. +.+.++|||. ||..|+..+ ..||. |+..+.
T Consensus 295 ~~~C~IC~~~~~--~~v~lpCgH~~fC~~C~~~~-----------~~CP~--CR~~i~ 337 (345)
T 3t6p_A 295 ERTCKVCMDKEV--SVVFIPCGHLVVCQECAPSL-----------RKCPI--CRGIIK 337 (345)
T ss_dssp TCBCTTTSSSBC--CEEEETTCCEEECTTTGGGC-----------SBCTT--TCCBCC
T ss_pred CCCCCccCCcCC--ceEEcCCCChhHhHHHHhcC-----------CcCCC--CCCCcc
Confidence 578999999875 3466799999 999999855 37998 888765
No 88
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.75 E-value=0.0053 Score=47.67 Aligned_cols=50 Identities=20% Similarity=0.534 Sum_probs=38.3
Q ss_pred CccccccccccccCCCCeeec-cCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccc
Q 009997 202 KSPENCSICCEDKPYPMMITM-KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 260 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 260 (520)
....+|.||++.+... ..+ .|+|.|...|+.+|++..- .-.||. |+..+.
T Consensus 13 ~~i~~C~IC~~~i~~g--~~C~~C~h~fH~~Ci~kWl~~~~-----~~~CP~--Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNA-----EPRCPH--CNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSS--EECSSSCCEECHHHHHHHSTTCS-----SCCCTT--TCSCCC
T ss_pred CCCCcCcchhhHcccC--CccCCCCchhhHHHHHHHHHhcC-----CCCCCC--CcCcCC
Confidence 3568899999988644 334 8999999999999986431 236998 887765
No 89
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=94.94 E-value=0.028 Score=56.05 Aligned_cols=58 Identities=22% Similarity=0.419 Sum_probs=41.5
Q ss_pred CccccccccccccCC-CCee-----eccCCCcccHHHHHHHHHHhhhCC-CC---ccccCCCCcCcccch
Q 009997 202 KSPENCSICCEDKPY-PMMI-----TMKCSHKFCSHCMRTYIDGKVQSS-QV---PIRCPQLRCKYFIST 261 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~-~~~~-----~l~CgH~fC~~Cl~~~i~~~i~~~-~~---~i~CP~~~C~~~l~~ 261 (520)
....+|+|||+.+.. ..+. ...|+|.|...|+..|+.+.-... .+ .=.||. |+..|+.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPy--Cr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF--CKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTT--TCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCC--CCCcCCc
Confidence 356799999988765 2222 237999999999999998764321 11 226998 9998874
No 90
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=94.86 E-value=0.017 Score=42.90 Aligned_cols=50 Identities=18% Similarity=0.212 Sum_probs=37.9
Q ss_pred cccccccccccCCCCeeec-cCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchHHH
Q 009997 204 PENCSICCEDKPYPMMITM-KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVEC 264 (520)
Q Consensus 204 ~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~i 264 (520)
.+.|+|+++....+ +.+ .+||.|++.|+.+|+... + +||. .+..+...++
T Consensus 3 ~~~CpIs~~~m~dP--V~~~~sG~~yer~~I~~~l~~~---~----~cP~--t~~~L~~~~L 53 (61)
T 2bay_A 3 HMLCAISGKVPRRP--VLSPKSRTIFEKSLLEQYVKDT---G----NDPI--TNEPLSIEEI 53 (61)
T ss_dssp -CCCTTTCSCCSSE--EEETTTTEEEEHHHHHHHHHHH---S----BCTT--TCCBCCGGGC
T ss_pred eEEecCCCCCCCCC--EEeCCCCcEEcHHHHHHHHHhC---C----CCcC--CcCCCChhhc
Confidence 47899999887644 556 899999999999999853 1 4998 6667765544
No 91
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=94.41 E-value=0.055 Score=39.99 Aligned_cols=50 Identities=18% Similarity=0.385 Sum_probs=35.8
Q ss_pred CccccccccccccCCCCeeecc--CCC---cccHHHHHHHHHHhhhCCCCccccCCCCcCcccc
Q 009997 202 KSPENCSICCEDKPYPMMITMK--CSH---KFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 260 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~~~~~l~--CgH---~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 260 (520)
.....|.||+++.. +++ ..+ |.| .|...|+.+|+..+- ...||. |+..+.
T Consensus 4 ~~~~~CrIC~~~~~-~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~-----~~~C~~--C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG-NER-FRACGCTGELENVHRSCLSTWLTISR-----NTACQI--CGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS-CCC-CCSCCCSSGGGSCCHHHHHHHHHHHT-----CSBCTT--TCCBCC
T ss_pred CCCCEeEEeecCCC-Cce-ecCcCCCCchhhhHHHHHHHHHHhCC-----CCccCC--CCCeee
Confidence 34678999998753 333 245 545 899999999997542 357998 887654
No 92
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=93.50 E-value=0.056 Score=43.92 Aligned_cols=45 Identities=27% Similarity=0.575 Sum_probs=30.5
Q ss_pred cccccccccCCCCeeec-cCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccc
Q 009997 206 NCSICCEDKPYPMMITM-KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 260 (520)
Q Consensus 206 ~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 260 (520)
-|.+|- +|..-...+ +|.|.||.+|...+.+..-+ .||. |+..+.
T Consensus 3 fC~~C~--~Pi~iygRmIPCkHvFCydCa~~~~~~~~k------~Cp~--C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCG--LPIKVYGRMIPCKHVFCYDCAILHEKKGDK------MCPG--CSDPVQ 48 (101)
T ss_dssp BCTTTC--SBCSEEEEEETTCCEEEHHHHHHHHHTTCC------BCTT--TCCBCS
T ss_pred ecCccC--CCeEEEeeeccccccHHHHHHHHHHhccCC------CCcC--cCCeee
Confidence 477774 443333334 99999999999998764322 4877 777654
No 93
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=93.30 E-value=0.29 Score=37.73 Aligned_cols=50 Identities=30% Similarity=0.624 Sum_probs=38.8
Q ss_pred CCccccccccccccCCCCeeecc--CCCcccHHHHHHHHHHhhhCCCCccccCC
Q 009997 201 DKSPENCSICCEDKPYPMMITMK--CSHKFCSHCMRTYIDGKVQSSQVPIRCPQ 252 (520)
Q Consensus 201 ~~~~~~C~IC~e~~~~~~~~~l~--CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~ 252 (520)
+.....|.+|-+......++.++ =.|.||+.|-+.+|+.+-..+ .+.||.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~--EvyCPS 63 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATG--EVYCPS 63 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSS--CCCCTT
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCC--cEECCC
Confidence 45689999999998888787763 369999999999999875443 345664
No 94
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.80 E-value=0.075 Score=39.30 Aligned_cols=39 Identities=26% Similarity=0.652 Sum_probs=29.9
Q ss_pred CceeccCCCCCeeecCcccccccccCCCCCCCCceeCCC--CCcceeccCCCccC
Q 009997 289 DRIYCPFPNCSVLLDPRECLSARASSSSQSDNSCVECPV--CERFICVECGVPWH 341 (520)
Q Consensus 289 ~~~~CP~p~C~~~~~~~~~~~~~~~~~~~~~~~~~~Cp~--C~~~fC~~C~~~wH 341 (520)
+...||. |...+...+. -..++|.. |+..||+.|..+|.
T Consensus 5 ~~k~CP~--C~~~Iek~~G------------CnhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 5 NTKECPK--CHVTIEKDGG------------CNHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCCCTT--TCCCCSSCCS------------CCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred cceECcC--CCCeeEeCCC------------CCcEEECCCCcCCEEeeCcCCCcc
Confidence 4567885 9988876532 13488988 99999999999983
No 95
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=90.47 E-value=0.14 Score=41.71 Aligned_cols=33 Identities=21% Similarity=0.659 Sum_probs=25.2
Q ss_pred cccccccccccCCCCeee-ccCCCcccHHHHHHH
Q 009997 204 PENCSICCEDKPYPMMIT-MKCSHKFCSHCMRTY 236 (520)
Q Consensus 204 ~~~C~IC~e~~~~~~~~~-l~CgH~fC~~Cl~~~ 236 (520)
...|.||.+.+..+.... +.|+|.||..|++.+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 478999997644333333 699999999999983
No 96
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=85.70 E-value=2.3 Score=36.17 Aligned_cols=35 Identities=20% Similarity=0.523 Sum_probs=25.9
Q ss_pred CccccccccccccCCC-Ceeec-cCCCcccHHHHHHH
Q 009997 202 KSPENCSICCEDKPYP-MMITM-KCSHKFCSHCMRTY 236 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~-~~~~l-~CgH~fC~~Cl~~~ 236 (520)
.....|.+|...|... .-..+ .||+.||..|....
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 3456899999887643 22455 89999999998654
No 97
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=83.75 E-value=0.73 Score=43.85 Aligned_cols=51 Identities=20% Similarity=0.506 Sum_probs=39.1
Q ss_pred ccccccccccccCCCCeeec-cCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccchH
Q 009997 203 SPENCSICCEDKPYPMMITM-KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTV 262 (520)
Q Consensus 203 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~ 262 (520)
....|.||.+-.... ..+ .|+|.|...|+..|++.. ...+||. |+..++.+
T Consensus 179 ~i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~-----~~~~CP~--C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSN-----AEPRCPH--CNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTC-----SSCBCTT--TCCBCCSC
T ss_pred CCCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhC-----CCCCCCC--CCCCCCCC
Confidence 478899999887644 455 599999999999998632 2357997 98877643
No 98
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=82.07 E-value=0.53 Score=36.74 Aligned_cols=28 Identities=25% Similarity=0.643 Sum_probs=21.7
Q ss_pred cCccccceeeecCCcceEEec-cc--ccccccccccccC
Q 009997 375 RCQQCRRMIELTHGCYHMTCW-CG--HEFCYSCGAEYRD 410 (520)
Q Consensus 375 ~CP~C~~~IeK~~GCnhMtC~-Cg--~~FCy~C~~~~~~ 410 (520)
.||.|+.++++ |+ || ..||-.|+.-+++
T Consensus 33 fCPeCgq~Le~--------lkACGA~~yFC~~C~~LiSk 63 (81)
T 2jrp_A 33 LCPDCRQPLQV--------LKACGAVDYFCQNGHGLISK 63 (81)
T ss_dssp ECSSSCSCCCE--------EEETTEEEECCTTTTCCCCT
T ss_pred cCcchhhHHHH--------HHhcCCcCeeeccCCCEeec
Confidence 79999999987 64 76 4688888877654
No 99
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.43 E-value=0.53 Score=35.44 Aligned_cols=32 Identities=28% Similarity=0.724 Sum_probs=26.2
Q ss_pred ccCccccceeeecCCcceEEecccccccccccccccC
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRD 410 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~~ 410 (520)
..||-|...+. +-++-.|||.||+.|...|-.
T Consensus 21 ~~C~IC~~~~~-----~~~~~~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 21 VICPICLDILQ-----KPVTIDCGHNFCLKCITQIGE 52 (73)
T ss_dssp CBCTTTCSBCS-----SEEECTTCCEEEHHHHHHHCS
T ss_pred CEeccCCcccC-----CeEEcCCCChhhHHHHHHHHH
Confidence 68999998776 345558999999999999875
No 100
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.67 E-value=0.49 Score=35.60 Aligned_cols=41 Identities=24% Similarity=0.489 Sum_probs=29.5
Q ss_pred ccCccccceeeecCCcceEEecccccccccccccccCCCCcccCCCCC
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDGQQTCQCAFWD 421 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~~~~~~c~C~~~~ 421 (520)
..||-|...+.. -++-.|||.||+.|...|-..+. .||.=+
T Consensus 16 ~~C~IC~~~~~~-----~~~~~CgH~fC~~Ci~~~~~~~~--~CP~Cr 56 (71)
T 2d8t_A 16 PECAICLQTCVH-----PVSLPCKHVFCYLCVKGASWLGK--RCALCR 56 (71)
T ss_dssp CBCSSSSSBCSS-----EEEETTTEEEEHHHHHHCTTCSS--BCSSSC
T ss_pred CCCccCCcccCC-----CEEccCCCHHHHHHHHHHHHCCC--cCcCcC
Confidence 689999887643 25557999999999999865443 355433
No 101
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.57 E-value=0.39 Score=35.18 Aligned_cols=32 Identities=28% Similarity=0.724 Sum_probs=26.1
Q ss_pred ccCccccceeeecCCcceEEecccccccccccccccC
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRD 410 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~~ 410 (520)
..||-|...+.. -++-.|||.||+.|...|-.
T Consensus 21 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 21 VICPICLDILQK-----PVTIDCGHNFCLKCITQIGE 52 (63)
T ss_dssp CBCTTTCSBCSS-----CEECTTSSEECHHHHHHHHH
T ss_pred CCCCcCCchhCC-----eEEeCCCCcchHHHHHHHHH
Confidence 689999987763 45558999999999999864
No 102
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=79.83 E-value=0.56 Score=40.47 Aligned_cols=36 Identities=25% Similarity=0.527 Sum_probs=27.9
Q ss_pred ccCccccceeeecCCcceEEecccccccccccccccCCCCc
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDGQQT 414 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~~~~~~ 414 (520)
-.||-|...+.. -++-.|||.||..|...|-..+..
T Consensus 54 ~~C~iC~~~~~~-----~~~~~CgH~fc~~Ci~~~~~~~~~ 89 (138)
T 4ayc_A 54 LQCIICSEYFIE-----AVTLNCAHSFCSYCINEWMKRKIE 89 (138)
T ss_dssp SBCTTTCSBCSS-----EEEETTSCEEEHHHHHHHTTTCSB
T ss_pred CCCcccCcccCC-----ceECCCCCCccHHHHHHHHHcCCc
Confidence 469999988752 356689999999999998765444
No 103
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=79.69 E-value=0.79 Score=36.06 Aligned_cols=28 Identities=21% Similarity=0.439 Sum_probs=24.6
Q ss_pred ccCccccceeeecCCcceEEec-cccccc
Q 009997 374 RRCQQCRRMIELTHGCYHMTCW-CGHEFC 401 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~-Cg~~FC 401 (520)
-.||.|+....+..+=..+.|. |++.|-
T Consensus 28 y~Cp~CG~~~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 28 HACPNCGEDRVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp EECSSSCCEEEEEEETTEEEETTTCCEEE
T ss_pred CcCCCCCCcceeccCCCeEECCCCCCEec
Confidence 7899999999999888899996 888764
No 104
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=79.57 E-value=0.5 Score=33.39 Aligned_cols=43 Identities=21% Similarity=0.406 Sum_probs=30.5
Q ss_pred ccCccccceeeecCCcceEEec-ccccccccccccccCCCCcccCCCC
Q 009997 374 RRCQQCRRMIELTHGCYHMTCW-CGHEFCYSCGAEYRDGQQTCQCAFW 420 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~-Cg~~FCy~C~~~~~~~~~~c~C~~~ 420 (520)
..||-|...+.... ..++-. |||.||..|...|-.... .||.-
T Consensus 6 ~~C~IC~~~~~~~~--~~~~~~~C~H~f~~~Ci~~w~~~~~--~CP~C 49 (55)
T 1iym_A 6 VECAVCLAELEDGE--EARFLPRCGHGFHAECVDMWLGSHS--TCPLC 49 (55)
T ss_dssp CCCTTTCCCCCTTS--CCEECSSSCCEECTTHHHHTTTTCC--SCSSS
T ss_pred CcCccCCccccCCC--ceEECCCCCCcccHHHHHHHHHcCC--cCcCC
Confidence 57999988776543 234554 999999999999976544 35543
No 105
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=79.44 E-value=1.6 Score=30.52 Aligned_cols=28 Identities=18% Similarity=0.437 Sum_probs=21.9
Q ss_pred CccCccccc-eeeecCCcceEEec-ccccc
Q 009997 373 WRRCQQCRR-MIELTHGCYHMTCW-CGHEF 400 (520)
Q Consensus 373 ~k~CP~C~~-~IeK~~GCnhMtC~-Cg~~F 400 (520)
...||.|+. .+..+..=..+.|. ||..|
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 368999998 78777777789996 87754
No 106
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=78.94 E-value=1.1 Score=33.85 Aligned_cols=28 Identities=7% Similarity=0.086 Sum_probs=23.5
Q ss_pred CccCccccceeeecCCcceEEec-ccccc
Q 009997 373 WRRCQQCRRMIELTHGCYHMTCW-CGHEF 400 (520)
Q Consensus 373 ~k~CP~C~~~IeK~~GCnhMtC~-Cg~~F 400 (520)
+-.||.|+..++...+.+.++|+ ||..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCBCSSSCCBCEEETTTTEEEETTTTEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 36899999999999888999995 76655
No 107
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=78.75 E-value=0.4 Score=36.51 Aligned_cols=32 Identities=19% Similarity=0.477 Sum_probs=26.2
Q ss_pred ccCccccceeeecCCcceEEec-ccccccccccccccC
Q 009997 374 RRCQQCRRMIELTHGCYHMTCW-CGHEFCYSCGAEYRD 410 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~-Cg~~FCy~C~~~~~~ 410 (520)
-.||-|...+. +-++-. |||.||+.|...|-.
T Consensus 16 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~~ 48 (74)
T 2yur_A 16 LLCLICKDIMT-----DAVVIPCCGNSYCDECIRTALL 48 (74)
T ss_dssp GSCSSSCCCCT-----TCEECSSSCCEECTTHHHHHHH
T ss_pred CCCcCCChHHh-----CCeEcCCCCCHHHHHHHHHHHH
Confidence 68999988775 346667 999999999999864
No 108
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.59 E-value=0.68 Score=34.55 Aligned_cols=35 Identities=23% Similarity=0.544 Sum_probs=27.1
Q ss_pred ccCccccceeeecCCcceEEecccccccccccccccCCCCc
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDGQQT 414 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~~~~~~ 414 (520)
..||-|...+.. ++=.|||.||+.|...|-.....
T Consensus 16 ~~C~IC~~~~~~------~~~~CgH~fc~~Ci~~~~~~~~~ 50 (70)
T 2ecn_A 16 EECCICMDGRAD------LILPCAHSFCQKCIDKWSDRHRN 50 (70)
T ss_dssp CCCSSSCCSCCS------EEETTTEEECHHHHHHSSCCCSS
T ss_pred CCCeeCCcCccC------cccCCCCcccHHHHHHHHHCcCc
Confidence 689999887653 55579999999999998764433
No 109
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=77.59 E-value=0.61 Score=38.31 Aligned_cols=34 Identities=26% Similarity=0.490 Sum_probs=27.8
Q ss_pred ccCccccceeeecCCcceEEe-cccccccccccccccCCC
Q 009997 374 RRCQQCRRMIELTHGCYHMTC-WCGHEFCYSCGAEYRDGQ 412 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC-~Cg~~FCy~C~~~~~~~~ 412 (520)
-.||-|...+.. -++. .|||.||+.|...|-..+
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~ 50 (108)
T 2ckl_A 16 LMCVLCGGYFID-----ATTIIECLHSFCKTCIVRYLETS 50 (108)
T ss_dssp TBCTTTSSBCSS-----EEEETTTCCEEEHHHHHHHHTSC
T ss_pred CCCccCChHHhC-----cCEeCCCCChhhHHHHHHHHHhC
Confidence 689999988753 5777 799999999999986544
No 110
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=77.28 E-value=0.51 Score=38.28 Aligned_cols=32 Identities=25% Similarity=0.636 Sum_probs=26.7
Q ss_pred ccCccccceeeecCCcceEEe-cccccccccccccccC
Q 009997 374 RRCQQCRRMIELTHGCYHMTC-WCGHEFCYSCGAEYRD 410 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC-~Cg~~FCy~C~~~~~~ 410 (520)
-.||-|...+. +-++| .|||.||+.|...|-.
T Consensus 23 ~~C~IC~~~~~-----~p~~~~~CgH~FC~~Ci~~~~~ 55 (100)
T 3lrq_A 23 FRCFICMEKLR-----DARLCPHCSKLCCFSCIRRWLT 55 (100)
T ss_dssp TBCTTTCSBCS-----SEEECTTTCCEEEHHHHHHHHH
T ss_pred CCCccCCcccc-----CccccCCCCChhhHHHHHHHHH
Confidence 68999999886 35776 4999999999999854
No 111
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=77.05 E-value=0.62 Score=36.14 Aligned_cols=35 Identities=26% Similarity=0.656 Sum_probs=25.3
Q ss_pred ccCccccceeeecCCcceEEeccccccccccccccc
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYR 409 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~ 409 (520)
..||-|--++... .-..+.|.|||.||..|...+.
T Consensus 12 ~~CpICle~~~~~-d~~~~p~~CGH~fC~~Cl~~~~ 46 (78)
T 1e4u_A 12 VECPLCMEPLEID-DINFFPCTCGYQICRFCWHRIR 46 (78)
T ss_dssp CBCTTTCCBCCTT-TTTCCSSTTSCCCCHHHHHHHT
T ss_pred CcCCccCccCccc-cccccccCCCCCcCHHHHHHHH
Confidence 6799999977432 2233447799999999987764
No 112
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=76.81 E-value=0.6 Score=37.64 Aligned_cols=36 Identities=22% Similarity=0.587 Sum_probs=28.2
Q ss_pred ccCccccceeeecCCcceEEe-cccccccccccccccCCCCc
Q 009997 374 RRCQQCRRMIELTHGCYHMTC-WCGHEFCYSCGAEYRDGQQT 414 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC-~Cg~~FCy~C~~~~~~~~~~ 414 (520)
-.||-|...+.. -++. .|||.||+.|...|-..+..
T Consensus 23 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~~~ 59 (99)
T 2y43_A 23 LRCGICFEYFNI-----AMIIPQCSHNYCSLCIRKFLSYKTQ 59 (99)
T ss_dssp TBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHHTTCCB
T ss_pred CCcccCChhhCC-----cCEECCCCCHhhHHHHHHHHHCCCC
Confidence 689999988763 4666 69999999999998765433
No 113
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=76.55 E-value=0.75 Score=35.12 Aligned_cols=33 Identities=21% Similarity=0.576 Sum_probs=25.9
Q ss_pred ccCccccceeeecCCcceEEecccccccccccccccCC
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDG 411 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~~~ 411 (520)
-.||-|...+.. -++-.|||.||+.|...|-..
T Consensus 13 ~~C~IC~~~~~~-----p~~l~CgH~fC~~Ci~~~~~~ 45 (79)
T 2egp_A 13 VTCPICLELLTE-----PLSLDCGHSLCRACITVSNKE 45 (79)
T ss_dssp CEETTTTEECSS-----CCCCSSSCCCCHHHHSCCCCC
T ss_pred CCCcCCCcccCC-----eeECCCCCHHHHHHHHHHHHh
Confidence 579999887753 344579999999999988653
No 114
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=76.16 E-value=1 Score=32.50 Aligned_cols=27 Identities=26% Similarity=0.522 Sum_probs=20.5
Q ss_pred ccCccccceeeecCCcceEEec-ccccc
Q 009997 374 RRCQQCRRMIELTHGCYHMTCW-CGHEF 400 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~-Cg~~F 400 (520)
+.||+|+..+.-...-+.++|. ||+.+
T Consensus 19 ~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 19 RFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp CCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred ccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 8899999865544445799995 99874
No 115
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.16 E-value=0.62 Score=33.22 Aligned_cols=31 Identities=26% Similarity=0.740 Sum_probs=24.9
Q ss_pred ccCccccceeeecCCcceEEeccccccccccccccc
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYR 409 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~ 409 (520)
..||-|...+... ++-.|||.||+.|...|-
T Consensus 16 ~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~ 46 (58)
T 2ecj_A 16 ASCSVCLEYLKEP-----VIIECGHNFCKACITRWW 46 (58)
T ss_dssp CBCSSSCCBCSSC-----CCCSSCCCCCHHHHHHHT
T ss_pred CCCccCCcccCcc-----EeCCCCCccCHHHHHHHH
Confidence 6899999887643 334699999999999984
No 116
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=74.57 E-value=0.47 Score=37.65 Aligned_cols=31 Identities=19% Similarity=0.535 Sum_probs=25.4
Q ss_pred ccCccccceeeecCCcceEEec-cccccccccccccc
Q 009997 374 RRCQQCRRMIELTHGCYHMTCW-CGHEFCYSCGAEYR 409 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~-Cg~~FCy~C~~~~~ 409 (520)
-.||-|...+. +-++-. |||.||..|...|-
T Consensus 14 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~ 45 (92)
T 3ztg_A 14 LLCLICKDIMT-----DAVVIPCCGNSYCDECIRTAL 45 (92)
T ss_dssp TEETTTTEECS-----SCEECTTTCCEECHHHHHHHH
T ss_pred CCCCCCChhhc-----CceECCCCCCHHHHHHHHHHH
Confidence 57999998775 346667 99999999998884
No 117
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=73.76 E-value=2.2 Score=33.28 Aligned_cols=44 Identities=20% Similarity=0.554 Sum_probs=31.9
Q ss_pred ccCccccceeeecCCcceEEec-cccc-----ccccccccccC----CCCcccCCC
Q 009997 374 RRCQQCRRMIELTHGCYHMTCW-CGHE-----FCYSCGAEYRD----GQQTCQCAF 419 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~-Cg~~-----FCy~C~~~~~~----~~~~c~C~~ 419 (520)
..||.|+..++.++| +..|. |+.. ||-.|++++.. |...++|+.
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~~C~~~~~~~afCPeCgq~Le~lkACGA~~yFC~~ 56 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCETCAKDFSLQALCPDCRQPLQVLKACGAVDYFCQN 56 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECTTTCCEEEEEEECSSSCSCCCEEEETTEEEECCTT
T ss_pred CCCCCCCCccccCCC--ceECccccccCCCcccCcchhhHHHHHHhcCCcCeeecc
Confidence 579999999999888 66685 8654 79999988742 323445664
No 118
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=72.85 E-value=1.3 Score=33.72 Aligned_cols=38 Identities=21% Similarity=0.375 Sum_probs=26.3
Q ss_pred ccCccccceeeecCCcceEEecccccccccccccccCCCC
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDGQQ 413 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~~~~~ 413 (520)
..||-|...+.... .-+.-.|||.||+.|...|-..+.
T Consensus 16 ~~C~IC~~~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~ 53 (78)
T 2ect_A 16 LECPVCKEDYALGE--SVRQLPCNHLFHDSCIVPWLEQHD 53 (78)
T ss_dssp CCCTTTTSCCCTTS--CEEECTTSCEEETTTTHHHHTTTC
T ss_pred CCCeeCCccccCCC--CEEEeCCCCeecHHHHHHHHHcCC
Confidence 68999988765432 122235999999999998865443
No 119
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=72.72 E-value=1.3 Score=33.76 Aligned_cols=30 Identities=37% Similarity=0.821 Sum_probs=25.1
Q ss_pred ccCccccceeeecCCcceEEeccccccccccccc
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAE 407 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~ 407 (520)
.+|..|+..+...+ +.|+||..||-.-+-+
T Consensus 26 nRC~~CrKkvgL~g----f~CrCg~~FCs~HRy~ 55 (74)
T 1wfl_A 26 NRCFMCRKKVGLTG----FDCRCGNLFCGLHRYS 55 (74)
T ss_dssp TBCSSSCCBCGGGC----EECTTSCEECSSSCST
T ss_pred CcChhhCCcccccC----eecCCCCEechhcCCC
Confidence 68999999988773 8999999999876543
No 120
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=72.37 E-value=1.6 Score=32.37 Aligned_cols=30 Identities=40% Similarity=0.887 Sum_probs=25.2
Q ss_pred ccCccccceeeecCCcceEEeccccccccccccc
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAE 407 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~ 407 (520)
.+|..|+..+... -+.|+||..||-.-+-+
T Consensus 16 ~rC~~C~kkvgl~----~f~CrCg~~FC~~HRy~ 45 (64)
T 1wfh_A 16 NRCTVCRKRVGLT----GFMCRCGTTFCGSHRYP 45 (64)
T ss_dssp CCCTTTCCCCCTT----CEECSSSCEECTTTCST
T ss_pred CcChhhCCccCcc----CEEeecCCEeccccCCc
Confidence 7899999988876 48999999999876644
No 121
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=72.25 E-value=0.85 Score=38.42 Aligned_cols=32 Identities=22% Similarity=0.512 Sum_probs=25.5
Q ss_pred ccCccccceeeecCCcceEEecccccccccccccccC
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRD 410 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~~ 410 (520)
-.||-|...+. +-++-.|||.||..|...|-.
T Consensus 53 ~~C~IC~~~~~-----~p~~~~CgH~fC~~Ci~~~~~ 84 (124)
T 3fl2_A 53 FQCICCQELVF-----RPITTVCQHNVCKDCLDRSFR 84 (124)
T ss_dssp TBCTTTSSBCS-----SEEECTTSCEEEHHHHHHHHH
T ss_pred CCCCcCChHHc-----CcEEeeCCCcccHHHHHHHHh
Confidence 57999998876 335557999999999988854
No 122
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=72.21 E-value=1.8 Score=30.54 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=19.1
Q ss_pred CccCccccceeeecCCcceEEec-ccccc
Q 009997 373 WRRCQQCRRMIELTHGCYHMTCW-CGHEF 400 (520)
Q Consensus 373 ~k~CP~C~~~IeK~~GCnhMtC~-Cg~~F 400 (520)
.+-||+|+..+.-...=+.+.|. ||+.+
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred cccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 48999999844333223788995 88754
No 123
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=71.95 E-value=0.45 Score=35.56 Aligned_cols=39 Identities=23% Similarity=0.478 Sum_probs=27.9
Q ss_pred ccCccccceeeec--CCcceEEecccccccccccccccCCC
Q 009997 374 RRCQQCRRMIELT--HGCYHMTCWCGHEFCYSCGAEYRDGQ 412 (520)
Q Consensus 374 k~CP~C~~~IeK~--~GCnhMtC~Cg~~FCy~C~~~~~~~~ 412 (520)
..||-|...+... .|-.-++-.|||.||+.|...|-..+
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~ 51 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA 51 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC
Confidence 6899999887653 23333444699999999999885433
No 124
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=71.79 E-value=0.88 Score=36.14 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=28.4
Q ss_pred ccCccccceeeecCCcceEEecccccccccccccccCCCCc
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDGQQT 414 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~~~~~~ 414 (520)
..||-|...+.... ..++-.|||.||+.|...|-..+..
T Consensus 41 ~~C~IC~~~~~~~~--~~~~l~C~H~Fh~~Ci~~wl~~~~~ 79 (91)
T 2l0b_A 41 MCCPICCSEYVKGD--VATELPCHHYFHKPCVSIWLQKSGT 79 (91)
T ss_dssp SEETTTTEECCTTC--EEEEETTTEEEEHHHHHHHHTTTCB
T ss_pred CCCcccChhhcCCC--cEEecCCCChHHHHHHHHHHHcCCc
Confidence 57999988776433 2334469999999999999765443
No 125
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.68 E-value=0.78 Score=35.79 Aligned_cols=36 Identities=19% Similarity=0.405 Sum_probs=26.5
Q ss_pred ccCccccceeeecCCcceEEecccccccccccccccC
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRD 410 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~~ 410 (520)
..||-|...+...... -++-.|||.||+.|...|-.
T Consensus 16 ~~C~IC~~~~~~~~~~-~~~~~CgH~fC~~Ci~~~~~ 51 (88)
T 2ct2_A 16 LECPICMESFTEEQLR-PKLLHCGHTICRQCLEKLLA 51 (88)
T ss_dssp CBCTTTCCBCCTTSSC-EEECSSSCEEEHHHHHHHHH
T ss_pred CCCccCCccccccCCC-eEECCCCChhhHHHHHHHHH
Confidence 6799999887654221 23447999999999998853
No 126
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.54 E-value=0.55 Score=35.41 Aligned_cols=32 Identities=28% Similarity=0.427 Sum_probs=24.9
Q ss_pred ccCccccceeeecCCcceEEe-cccccccccccccccC
Q 009997 374 RRCQQCRRMIELTHGCYHMTC-WCGHEFCYSCGAEYRD 410 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC-~Cg~~FCy~C~~~~~~ 410 (520)
..||-|...+.. -++- .|||.||+.|...|-.
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~ 48 (72)
T 2djb_A 16 ILCSICKGYLID-----ATTITECLHTFCKSCIVRHFY 48 (72)
T ss_dssp GSCTTTSSCCSS-----CEECSSSCCEECHHHHHHHHH
T ss_pred CCCCCCChHHHC-----cCEECCCCCHHHHHHHHHHHH
Confidence 689999887764 4555 5999999999888853
No 127
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.21 E-value=1 Score=33.15 Aligned_cols=32 Identities=31% Similarity=0.728 Sum_probs=25.0
Q ss_pred ccCccccceeeecCCcceEEecccccccccccccccC
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRD 410 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~~ 410 (520)
..||-|...+... ++-.|||.||+.|...|-.
T Consensus 16 ~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~ 47 (66)
T 2ecy_A 16 YKCEKCHLVLCSP-----KQTECGHRFCESCMAALLS 47 (66)
T ss_dssp EECTTTCCEESSC-----CCCSSSCCCCHHHHHHHHT
T ss_pred CCCCCCChHhcCe-----eECCCCCHHHHHHHHHHHH
Confidence 6799998887532 3336999999999999863
No 128
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.96 E-value=0.66 Score=35.08 Aligned_cols=37 Identities=19% Similarity=0.408 Sum_probs=27.2
Q ss_pred ccCccccceeeecCCcceEEecccccccccccccccCCC
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDGQ 412 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~~~~ 412 (520)
..||-|...+..... .++..|||.||+.|...|-...
T Consensus 16 ~~C~IC~~~~~~~~~--~~~~~C~H~f~~~Ci~~~~~~~ 52 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDE--LGICPCKHAFHRKCLIKWLEVR 52 (74)
T ss_dssp CBCSSSCCBCCSSSC--EEEETTTEEEEHHHHHHHHHHC
T ss_pred CCCcCCCcccCCCCc--EEEcCCCCEecHHHHHHHHHcC
Confidence 689999988765432 2334699999999999985433
No 129
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=69.81 E-value=0.94 Score=40.22 Aligned_cols=32 Identities=31% Similarity=0.555 Sum_probs=26.6
Q ss_pred ccCccccceeeecCCcceEEe-cccccccccccccccC
Q 009997 374 RRCQQCRRMIELTHGCYHMTC-WCGHEFCYSCGAEYRD 410 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC-~Cg~~FCy~C~~~~~~ 410 (520)
-.||-|...+.. -++. .|||.||+.|...|-.
T Consensus 55 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~ 87 (165)
T 2ckl_B 55 LMCPICLDMLKN-----TMTTKECLHRFCADCIITALR 87 (165)
T ss_dssp HBCTTTSSBCSS-----EEEETTTCCEEEHHHHHHHHH
T ss_pred CCCcccChHhhC-----cCEeCCCCChhHHHHHHHHHH
Confidence 489999988763 5777 7999999999998854
No 130
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=69.08 E-value=1.2 Score=32.67 Aligned_cols=21 Identities=43% Similarity=0.979 Sum_probs=18.3
Q ss_pred eeCCCCCcceeccCCCccCCC
Q 009997 323 VECPVCERFICVECGVPWHSS 343 (520)
Q Consensus 323 ~~Cp~C~~~fC~~C~~~wH~~ 343 (520)
..|+.|+..||..|..-.|..
T Consensus 31 y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 31 YVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp ECCTTTTCCBCHHHHHTTTTT
T ss_pred EECCccCcCcccchhHHHHhh
Confidence 679999999999998877765
No 131
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.93 E-value=0.75 Score=35.50 Aligned_cols=33 Identities=33% Similarity=0.634 Sum_probs=25.6
Q ss_pred ccCccccceeeecCCcceEEecccccccccccccccCC
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDG 411 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~~~ 411 (520)
-.||-|...+.. -++-.|||.||+.|...|-..
T Consensus 16 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~ 48 (81)
T 2csy_A 16 FRCFICRQAFQN-----PVVTKCRHYFCESCALEHFRA 48 (81)
T ss_dssp SBCSSSCSBCCS-----EEECTTSCEEEHHHHHHHHHH
T ss_pred CCCcCCCchhcC-----eeEccCCCHhHHHHHHHHHHC
Confidence 589999888753 345469999999999888543
No 132
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=67.85 E-value=2.1 Score=31.81 Aligned_cols=30 Identities=30% Similarity=0.761 Sum_probs=24.8
Q ss_pred ccCccccceeeecCCcceEEeccccccccccccc
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAE 407 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~ 407 (520)
.+|..|+..+... -++|+||..||-.-+-+
T Consensus 16 ~rC~~C~kkvgl~----~f~CrCg~~FC~~HR~~ 45 (64)
T 1wg2_A 16 NRCFSCNKKVGVM----GFKCKCGSTFCGSHRYP 45 (64)
T ss_dssp CSCTTTCCCCTTS----CEECTTSCEECSSSCSS
T ss_pred CcChhhCCccccc----CeEeecCCEecccCCCc
Confidence 6899999987765 48999999999876644
No 133
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=67.74 E-value=1.4 Score=33.47 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=26.2
Q ss_pred ccCccccceeeecCCcceEEecccccccccccccccCC
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDG 411 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~~~ 411 (520)
-.||-|...+.. -++-.|||.||..|...|-..
T Consensus 9 ~~C~IC~~~~~~-----Pv~~~CgH~fc~~Ci~~~~~~ 41 (78)
T 1t1h_A 9 FRCPISLELMKD-----PVIVSTGQTYERSSIQKWLDA 41 (78)
T ss_dssp SSCTTTSCCCSS-----EEEETTTEEEEHHHHHHHHTT
T ss_pred CCCCCccccccC-----CEEcCCCCeecHHHHHHHHHH
Confidence 579999987753 356689999999999888653
No 134
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=67.70 E-value=3 Score=31.01 Aligned_cols=35 Identities=29% Similarity=0.674 Sum_probs=26.2
Q ss_pred CCccccccccccccCCCCeeeccC-CCcccHHHHHHHHH
Q 009997 201 DKSPENCSICCEDKPYPMMITMKC-SHKFCSHCMRTYID 238 (520)
Q Consensus 201 ~~~~~~C~IC~e~~~~~~~~~l~C-gH~fC~~Cl~~~i~ 238 (520)
..+..-|.||.++-. +.-+.| +-.||..||+..-.
T Consensus 5 ~ee~pWC~ICneDAt---lrC~gCdgDLYC~rC~rE~H~ 40 (67)
T 2d8v_A 5 SSGLPWCCICNEDAT---LRCAGCDGDLYCARCFREGHD 40 (67)
T ss_dssp CCCCSSCTTTCSCCC---EEETTTTSEEECSSHHHHHTT
T ss_pred CcCCCeeEEeCCCCe---EEecCCCCceehHHHHHHHcc
Confidence 445678999998742 233489 78999999998763
No 135
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=67.42 E-value=1.1 Score=33.37 Aligned_cols=38 Identities=18% Similarity=0.326 Sum_probs=26.7
Q ss_pred ccCccccceeeecCCcceEEecccccccccccccccCCCC
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDGQQ 413 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~~~~~ 413 (520)
..||-|...+.... ..+.-.|||.||+.|...|-..+.
T Consensus 15 ~~C~IC~~~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~ 52 (69)
T 2kiz_A 15 EKCTICLSILEEGE--DVRRLPCMHLFHQVCVDQWLITNK 52 (69)
T ss_dssp CSBTTTTBCCCSSS--CEEECTTSCEEEHHHHHHHHHHCS
T ss_pred CCCeeCCccccCCC--cEEEeCCCCHHHHHHHHHHHHcCC
Confidence 68999988774322 233446999999999999854333
No 136
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=67.06 E-value=0.73 Score=33.48 Aligned_cols=38 Identities=24% Similarity=0.492 Sum_probs=26.0
Q ss_pred ccCccccceeeec--CCcceEEecccccccccccccccCC
Q 009997 374 RRCQQCRRMIELT--HGCYHMTCWCGHEFCYSCGAEYRDG 411 (520)
Q Consensus 374 k~CP~C~~~IeK~--~GCnhMtC~Cg~~FCy~C~~~~~~~ 411 (520)
..||-|...+... .+=.-+.-.|||.||..|...|-..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~ 43 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN 43 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc
Confidence 5688888876653 2222234469999999999988543
No 137
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=66.30 E-value=2.6 Score=33.11 Aligned_cols=32 Identities=28% Similarity=0.710 Sum_probs=25.4
Q ss_pred CccCccccceeeecCCcceEEeccccccccccccc
Q 009997 373 WRRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAE 407 (520)
Q Consensus 373 ~k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~ 407 (520)
..+|..|+..+-.. +-+.|+||..||-.-+-+
T Consensus 25 ~~rC~~C~kkvgl~---~~f~CrCg~~FC~~HRy~ 56 (85)
T 1wff_A 25 MKHCFLCGKKTGLA---TSFECRCGNNFCASHRYA 56 (85)
T ss_dssp CCBCSSSCCBCSSS---SCEECTTCCEECTTTCST
T ss_pred CccchhhCCeeccc---CCeEcCCCCEecccCCCc
Confidence 37899999987765 349999999999876643
No 138
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=65.61 E-value=4.6 Score=32.41 Aligned_cols=34 Identities=29% Similarity=0.889 Sum_probs=29.1
Q ss_pred ccCccccceeeecCCcceEEec-cccc-----cccccccccc
Q 009997 374 RRCQQCRRMIELTHGCYHMTCW-CGHE-----FCYSCGAEYR 409 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~-Cg~~-----FCy~C~~~~~ 409 (520)
..||.|+..++.++| +.+|. |... ||--|++++.
T Consensus 33 ~~CP~Cq~eL~~~g~--~~hC~~C~~~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--HARCRSCGEFIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEETT--EEEETTTCCEEEEEEECTTTCSBCE
T ss_pred ccCccCCCcceecCC--EEECccccchhhccccCcchhhHHH
Confidence 799999999999988 77895 8765 6999998874
No 139
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=64.42 E-value=2.7 Score=34.70 Aligned_cols=43 Identities=21% Similarity=0.498 Sum_probs=29.6
Q ss_pred ccCccccceeeecCCcceEEecccccccccccccccCCCCcccCCCCCC
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDGQQTCQCAFWDE 422 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~~~~~~c~C~~~~~ 422 (520)
-.||-|...+.. -++=.|||.||..|...|-..+ .-.||.=+.
T Consensus 16 ~~C~iC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~ 58 (115)
T 3l11_A 16 CQCGICMEILVE-----PVTLPCNHTLCKPCFQSTVEKA-SLCCPFCRR 58 (115)
T ss_dssp HBCTTTCSBCSS-----CEECTTSCEECHHHHCCCCCTT-TSBCTTTCC
T ss_pred CCCccCCcccCc-----eeEcCCCCHHhHHHHHHHHhHC-cCCCCCCCc
Confidence 479999987753 2344799999999999987542 234554333
No 140
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=64.03 E-value=2.7 Score=32.03 Aligned_cols=30 Identities=30% Similarity=0.814 Sum_probs=24.8
Q ss_pred ccCccccceeeecCCcceEEeccccccccccccc
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAE 407 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~ 407 (520)
.+|..|+..+... -+.|+||..||-.-.-+
T Consensus 26 ~RC~~C~kkvgL~----~f~CrCg~~FCs~HRy~ 55 (74)
T 1wfp_A 26 TRCLSCNKKVGVT----GFKCRCGSTFCGTHRYP 55 (74)
T ss_dssp CBCSSSCCBCTTT----CEECTTSCEECTTTCST
T ss_pred ccchhhcCccccc----ceEeccCCEeccccCCC
Confidence 7899999888776 48999999999776543
No 141
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=63.85 E-value=1.5 Score=33.60 Aligned_cols=31 Identities=23% Similarity=0.599 Sum_probs=24.8
Q ss_pred ccCccccceeeecCCcceEEeccccccccccccccc
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYR 409 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~ 409 (520)
-.||-|...+.. -++-.|||.||+.|...|-
T Consensus 20 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~ 50 (85)
T 2ecw_A 20 VTCPICLELLKE-----PVSADCNHSFCRACITLNY 50 (85)
T ss_dssp TSCTTTCSCCSS-----CEECTTSCCBCHHHHHHHH
T ss_pred CCCcCCChhhCc-----ceeCCCCCHHHHHHHHHHH
Confidence 589999887753 2455799999999998874
No 142
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.72 E-value=0.83 Score=33.72 Aligned_cols=37 Identities=24% Similarity=0.473 Sum_probs=26.2
Q ss_pred ccCccccceeeecC--CcceEEecccccccccccccccC
Q 009997 374 RRCQQCRRMIELTH--GCYHMTCWCGHEFCYSCGAEYRD 410 (520)
Q Consensus 374 k~CP~C~~~IeK~~--GCnhMtC~Cg~~FCy~C~~~~~~ 410 (520)
..||-|...+.... +-.-++-.|||.||+.|...|-.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 54 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 54 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHH
T ss_pred CCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHH
Confidence 67999988776542 22223446999999999998854
No 143
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=62.17 E-value=1.1 Score=33.07 Aligned_cols=33 Identities=30% Similarity=0.605 Sum_probs=23.7
Q ss_pred ccCccccceeeecCCcceEEecccccccccccccccC
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRD 410 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~~ 410 (520)
..||-|...+... .++=.|||.||+.|...|-.
T Consensus 6 ~~C~IC~~~~~~~----~~~~~C~H~fc~~Ci~~~~~ 38 (68)
T 1chc_A 6 ERCPICLEDPSNY----SMALPCLHAFCYVCITRWIR 38 (68)
T ss_dssp CCCSSCCSCCCSC----EEETTTTEEESTTHHHHHHH
T ss_pred CCCeeCCccccCC----cEecCCCCeeHHHHHHHHHh
Confidence 6899998876521 13335999999999988854
No 144
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=61.44 E-value=4.8 Score=39.67 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHc
Q 009997 106 ESVADYLALMDGLITAVQN 124 (520)
Q Consensus 106 nn~AE~~ALi~~l~~a~~~ 124 (520)
|-.++|.-++..|..++..
T Consensus 43 ~p~~~yL~f~a~l~~aQ~~ 61 (309)
T 2fiy_A 43 HPMGDYLRLVAGLCRLQQA 61 (309)
T ss_dssp CTTHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHH
Confidence 3368888888888776553
No 145
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=61.40 E-value=1.6 Score=37.80 Aligned_cols=32 Identities=28% Similarity=0.715 Sum_probs=26.3
Q ss_pred ccCccccceeeecCCcceEEecccccccccccccccC
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRD 410 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~~ 410 (520)
-.||-|...+.. -++..|||.||..|...|-.
T Consensus 32 ~~C~IC~~~~~~-----pv~~~CgH~FC~~Ci~~~~~ 63 (141)
T 3knv_A 32 YLCSACRNVLRR-----PFQAQCGHRYCSFCLASILS 63 (141)
T ss_dssp GBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHGG
T ss_pred cCCCCCChhhcC-----cEECCCCCccCHHHHHHHHh
Confidence 589999988753 36668999999999998854
No 146
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.03 E-value=1.5 Score=33.13 Aligned_cols=36 Identities=22% Similarity=0.383 Sum_probs=25.9
Q ss_pred ccCccccceeeecCCcceEEecccccccccccccccCC
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDG 411 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~~~ 411 (520)
..||-|...+.... ..+.-.|||.||+.|...|-..
T Consensus 24 ~~C~IC~~~~~~~~--~~~~l~C~H~fh~~Ci~~w~~~ 59 (75)
T 1x4j_A 24 TLCVVCMCDFESRQ--LLRVLPCNHEFHAKCVDKWLKA 59 (75)
T ss_dssp CEETTTTEECCBTC--EEEEETTTEEEETTHHHHHHHH
T ss_pred CCCeECCcccCCCC--eEEEECCCCHhHHHHHHHHHHc
Confidence 67999998776543 2222359999999999998543
No 147
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=60.90 E-value=4.7 Score=30.32 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=20.8
Q ss_pred ccCccccceeeecCCcceEEec-ccccc
Q 009997 374 RRCQQCRRMIELTHGCYHMTCW-CGHEF 400 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~-Cg~~F 400 (520)
-.||.|+..++...+=+.++|+ ||..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 5899999999887666778885 65544
No 148
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=60.66 E-value=24 Score=28.89 Aligned_cols=48 Identities=19% Similarity=0.414 Sum_probs=32.6
Q ss_pred cccccccccccc------CCCCeeec-cCCCcccHHHHHH--HHHHhhhCCCCccccCC
Q 009997 203 SPENCSICCEDK------PYPMMITM-KCSHKFCSHCMRT--YIDGKVQSSQVPIRCPQ 252 (520)
Q Consensus 203 ~~~~C~IC~e~~------~~~~~~~l-~CgH~fC~~Cl~~--~i~~~i~~~~~~i~CP~ 252 (520)
+...|.+|.... ..++++.. .|+..|...|+.- -+...+..+.| .||.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W--~C~~ 60 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRW--QCIE 60 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCC--CCTT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhcccc--cccc
Confidence 456799998763 23466766 8999999999952 33344555555 4877
No 149
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.62 E-value=2.8 Score=32.40 Aligned_cols=43 Identities=19% Similarity=0.516 Sum_probs=27.1
Q ss_pred cCccccceeeecCCcceEEecccccccccccccccCCCCcccCCCC
Q 009997 375 RCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDGQQTCQCAFW 420 (520)
Q Consensus 375 ~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~~~~~~c~C~~~ 420 (520)
.||-|...+. .+.+..+.-.|||.|+..|...|-..+. .||.=
T Consensus 28 ~C~iC~~~~~-~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~--~CP~C 70 (81)
T 2ecl_A 28 ACLRCQAENK-QEDCVVVWGECNHSFHNCCMSLWVKQNN--RCPLC 70 (81)
T ss_dssp CCTTHHHHTC-TTTCCEEEETTSCEEEHHHHHHHTTTCC--BCTTT
T ss_pred cCcccccccC-CCceEEEeCCCCCccChHHHHHHHHhCC--CCCCc
Confidence 4444444332 3445555557999999999999976544 35543
No 150
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=60.31 E-value=5.2 Score=30.27 Aligned_cols=28 Identities=18% Similarity=0.385 Sum_probs=21.5
Q ss_pred CccCccccceeeecCCcceEEec-ccccc
Q 009997 373 WRRCQQCRRMIELTHGCYHMTCW-CGHEF 400 (520)
Q Consensus 373 ~k~CP~C~~~IeK~~GCnhMtC~-Cg~~F 400 (520)
+-.||.|+..++...+=+.++|+ ||..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 8 ILVCPVCKGRLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CCBCTTTCCBEEEETTTTEEEETTTTEEE
T ss_pred heECCCCCCcCEEeCCCCEEEcCCCCcee
Confidence 36899999999888766678885 65554
No 151
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.58 E-value=1.7 Score=33.32 Aligned_cols=31 Identities=26% Similarity=0.714 Sum_probs=24.4
Q ss_pred ccCccccceeeecCCcceEEeccccccccccccccc
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYR 409 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~ 409 (520)
..||-|...+.. -++-.|||.||..|...|-
T Consensus 20 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~ 50 (85)
T 2ecv_A 20 VTCPICLELLTQ-----PLSLDCGHSFCQACLTANH 50 (85)
T ss_dssp CCCTTTCSCCSS-----CBCCSSSCCBCTTHHHHHH
T ss_pred CCCCCCCcccCC-----ceeCCCCCHHHHHHHHHHH
Confidence 689999988753 2344799999999998873
No 152
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=59.57 E-value=2 Score=31.46 Aligned_cols=34 Identities=26% Similarity=0.551 Sum_probs=21.8
Q ss_pred ccCccccc-eeeecCCcceEEecccccccccccccc
Q 009997 374 RRCQQCRR-MIELTHGCYHMTCWCGHEFCYSCGAEY 408 (520)
Q Consensus 374 k~CP~C~~-~IeK~~GCnhMtC~Cg~~FCy~C~~~~ 408 (520)
..||-|.. .+....- ..++=.|||.||+.|...|
T Consensus 4 ~~C~IC~~~~~~~~~~-~~~~~~CgH~fC~~Ci~~~ 38 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSL-KLMVNVCGHTLCESCVDLL 38 (65)
T ss_dssp TCCSTTTTHHHHCSSC-CEEECTTCCCEEHHHHHHH
T ss_pred CcCCcCCCCccCCCcc-CeecCCCCCHhHHHHHHHH
Confidence 46888887 4433211 0123358888999998888
No 153
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=59.48 E-value=7.1 Score=32.22 Aligned_cols=32 Identities=25% Similarity=0.681 Sum_probs=25.6
Q ss_pred ccCccccceeeecCCcceEEe-cccccccccccccccC
Q 009997 374 RRCQQCRRMIELTHGCYHMTC-WCGHEFCYSCGAEYRD 410 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC-~Cg~~FCy~C~~~~~~ 410 (520)
-.||-|...+.. -++- .|||.||+.|...|-.
T Consensus 23 ~~C~IC~~~~~~-----pv~~~~CgH~fC~~Ci~~~~~ 55 (117)
T 1jm7_B 23 LRCSRCTNILRE-----PVCLGGCEHIFCSNCVSDCIG 55 (117)
T ss_dssp TSCSSSCSCCSS-----CBCCCSSSCCBCTTTGGGGTT
T ss_pred CCCCCCChHhhC-----ccEeCCCCCHHHHHHHHHHhc
Confidence 689999987753 3444 7999999999998864
No 154
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=58.91 E-value=5.5 Score=30.05 Aligned_cols=27 Identities=15% Similarity=0.384 Sum_probs=20.7
Q ss_pred ccCccccceeeecCCcceEEec-ccccc
Q 009997 374 RRCQQCRRMIELTHGCYHMTCW-CGHEF 400 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~-Cg~~F 400 (520)
-.||.|+..++...+=+.++|+ ||..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 9 LACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp CCCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred eeCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 6899999998877665678885 65544
No 155
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=58.85 E-value=2 Score=34.24 Aligned_cols=47 Identities=28% Similarity=0.742 Sum_probs=33.4
Q ss_pred CccccccccccccCCCCeeeccC-CCcccHHHHHHHHHHhhhCCCCccccCCCCcCcccch
Q 009997 202 KSPENCSICCEDKPYPMMITMKC-SHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIST 261 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~~~~~l~C-gH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 261 (520)
-..+.|..|+-... ..+ .| .|..|..|+...+... =+||. |+..|+.
T Consensus 26 ~G~~nCKsCWf~~k--~LV--~C~dHYLCl~CLtlmL~~S-------drCpI--C~~pLPt 73 (99)
T 2ko5_A 26 LGPQFCKSCWFENK--GLV--ECNNHYLCLNCLTLLLSVS-------NRCPI--CKMPLPT 73 (99)
T ss_dssp SCCCCCCSSCSCCS--SEE--ECSSCEEEHHHHHHTCSSS-------SEETT--TTEECCC
T ss_pred cCcccChhhccccC--Cee--eecchhhHHHHHHHHHhhc-------cCCcc--cCCcCCc
Confidence 34689999985442 333 44 4999999998876522 26998 9888765
No 156
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=58.81 E-value=2.4 Score=34.33 Aligned_cols=20 Identities=30% Similarity=0.737 Sum_probs=12.9
Q ss_pred cCccccceeeec---CCcceEEe
Q 009997 375 RCQQCRRMIELT---HGCYHMTC 394 (520)
Q Consensus 375 ~CP~C~~~IeK~---~GCnhMtC 394 (520)
-|++|..+|.-- -=|+|+.|
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFC 25 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFC 25 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEE
T ss_pred ecCccCCCeEEEeeeccccccHH
Confidence 599999998632 23555555
No 157
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=58.53 E-value=2 Score=35.83 Aligned_cols=32 Identities=25% Similarity=0.578 Sum_probs=25.8
Q ss_pred ccCccccceeeecCCcceEEecccccccccccccccC
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRD 410 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~~ 410 (520)
-.||-|...+.. -++..|||.||+.|...|-.
T Consensus 19 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~ 50 (118)
T 3hct_A 19 YECPICLMALRE-----AVQTPCGHRFCKACIIKSIR 50 (118)
T ss_dssp GBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHH
T ss_pred CCCCcCChhhcC-----eEECCcCChhhHHHHHHHHh
Confidence 589999988763 35668999999999988853
No 158
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=56.91 E-value=5.1 Score=33.27 Aligned_cols=28 Identities=18% Similarity=0.567 Sum_probs=22.4
Q ss_pred CccCccccceeeec----CCcceEEec-ccccc
Q 009997 373 WRRCQQCRRMIELT----HGCYHMTCW-CGHEF 400 (520)
Q Consensus 373 ~k~CP~C~~~IeK~----~GCnhMtC~-Cg~~F 400 (520)
.+-||.|+.++... .|.+.+.|+ |+|.+
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 37899999986543 368899996 99976
No 159
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=54.56 E-value=6.3 Score=33.17 Aligned_cols=28 Identities=21% Similarity=0.546 Sum_probs=22.6
Q ss_pred CccCccccceeeec----CCcceEEec-ccccc
Q 009997 373 WRRCQQCRRMIELT----HGCYHMTCW-CGHEF 400 (520)
Q Consensus 373 ~k~CP~C~~~IeK~----~GCnhMtC~-Cg~~F 400 (520)
++-||.|+.++.-. .+-+.+.|+ |+|.+
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCCee
Confidence 47899999986633 678999996 99866
No 160
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=54.15 E-value=2.4 Score=34.64 Aligned_cols=32 Identities=25% Similarity=0.594 Sum_probs=24.9
Q ss_pred ccCccccceeeecCCcceEEecccccccccccccccC
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRD 410 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~~ 410 (520)
-.||-|...+.. -++-.|||.||+.|...|-.
T Consensus 22 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~ 53 (112)
T 1jm7_A 22 LECPICLELIKE-----PVSTKCDHIFCKFCMLKLLN 53 (112)
T ss_dssp TSCSSSCCCCSS-----CCBCTTSCCCCSHHHHHHHH
T ss_pred CCCcccChhhcC-----eEECCCCCHHHHHHHHHHHH
Confidence 689999987742 23447999999999988854
No 161
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=53.85 E-value=4.8 Score=34.50 Aligned_cols=30 Identities=20% Similarity=0.509 Sum_probs=23.2
Q ss_pred cCCccCccccceeeec----CCcceEEec-ccccc
Q 009997 371 KRWRRCQQCRRMIELT----HGCYHMTCW-CGHEF 400 (520)
Q Consensus 371 ~~~k~CP~C~~~IeK~----~GCnhMtC~-Cg~~F 400 (520)
...+-||.|+.+..-. .|.+.+.|+ |+|++
T Consensus 22 ~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 22 TTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred cCCeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 4469999999986433 368899996 99976
No 162
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=52.48 E-value=7.9 Score=28.97 Aligned_cols=28 Identities=4% Similarity=-0.016 Sum_probs=21.6
Q ss_pred CccCccccceeeecCCcceEEec-ccccc
Q 009997 373 WRRCQQCRRMIELTHGCYHMTCW-CGHEF 400 (520)
Q Consensus 373 ~k~CP~C~~~IeK~~GCnhMtC~-Cg~~F 400 (520)
+-.||.|+..++....=+.+.|+ ||..|
T Consensus 10 iL~CP~ck~~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 10 VLACPKDKGPLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred HhCCCCCCCcCeEeCCCCEEEcCCCCccc
Confidence 36899999999887665678885 76555
No 163
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=51.03 E-value=3.2 Score=34.79 Aligned_cols=40 Identities=20% Similarity=0.488 Sum_probs=0.0
Q ss_pred cCccccceee--ecCCcceEEecccccccccccccccCCCCc
Q 009997 375 RCQQCRRMIE--LTHGCYHMTCWCGHEFCYSCGAEYRDGQQT 414 (520)
Q Consensus 375 ~CP~C~~~Ie--K~~GCnhMtC~Cg~~FCy~C~~~~~~~~~~ 414 (520)
.|+.|..... ..+.|.-+.-.|+|.|+..|...|-..+..
T Consensus 61 ~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~ 102 (117)
T 4a0k_B 61 LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV 102 (117)
T ss_dssp ------------------------------------------
T ss_pred cChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCc
Confidence 4555544321 145677777789999999999999755433
No 164
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=49.24 E-value=5.9 Score=32.40 Aligned_cols=16 Identities=13% Similarity=0.289 Sum_probs=13.3
Q ss_pred CCCCCcceeccCCCcc
Q 009997 325 CPVCERFICVECGVPW 340 (520)
Q Consensus 325 Cp~C~~~fC~~C~~~w 340 (520)
-..|++.||..|...|
T Consensus 58 ~~~C~H~Fh~~Ci~~w 73 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAM 73 (114)
T ss_dssp ESSSCCEECHHHHHHH
T ss_pred cCCCCCcccHHHHHHH
Confidence 4569999999998877
No 165
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=47.99 E-value=4.1 Score=33.56 Aligned_cols=32 Identities=25% Similarity=0.548 Sum_probs=25.7
Q ss_pred ccCccccceeeecCCcceEEecccccccccccccccC
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRD 410 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~~ 410 (520)
-.||-|...+.. -++-.|||.||+.|...|-.
T Consensus 24 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~ 55 (116)
T 1rmd_A 24 ISCQICEHILAD-----PVETSCKHLFCRICILRCLK 55 (116)
T ss_dssp TBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHH
T ss_pred CCCCCCCcHhcC-----cEEcCCCCcccHHHHHHHHh
Confidence 689999988753 35557999999999988854
No 166
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=47.83 E-value=3.7 Score=36.41 Aligned_cols=31 Identities=26% Similarity=0.599 Sum_probs=26.2
Q ss_pred ccCccccceeeecCCcceEEeccccccccccccccc
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYR 409 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~ 409 (520)
-.||-|...+.. -+++.|||.||..|...|-
T Consensus 19 ~~C~IC~~~~~~-----pv~~~CgH~fC~~Ci~~~~ 49 (170)
T 3hcs_A 19 YECPICLMALRE-----AVQTPCGHRFCKACIIKSI 49 (170)
T ss_dssp GBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHH
T ss_pred CCCCCCChhhcC-----cEECCCCCHHHHHHHHHHH
Confidence 589999988764 3777899999999998884
No 167
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=47.76 E-value=11 Score=27.01 Aligned_cols=26 Identities=23% Similarity=0.630 Sum_probs=19.9
Q ss_pred CccCccccceeeecCCcceEEec---ccccc
Q 009997 373 WRRCQQCRRMIELTHGCYHMTCW---CGHEF 400 (520)
Q Consensus 373 ~k~CP~C~~~IeK~~GCnhMtC~---Cg~~F 400 (520)
+-.||.|+...+... +.+.|+ ||..|
T Consensus 10 iL~CP~c~~~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 10 ILACPACHAPLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp SCCCSSSCSCEEEET--TEEEECSSSCCCEE
T ss_pred heeCCCCCCcceecC--CEEEcCCcCCCcEE
Confidence 368999999988877 677775 66544
No 168
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=47.18 E-value=5.4 Score=32.69 Aligned_cols=31 Identities=23% Similarity=0.589 Sum_probs=22.9
Q ss_pred CCcceEEecccccccccccccccCCCCcccCCC
Q 009997 387 HGCYHMTCWCGHEFCYSCGAEYRDGQQTCQCAF 419 (520)
Q Consensus 387 ~GCnhMtC~Cg~~FCy~C~~~~~~~~~~c~C~~ 419 (520)
++|.-+.-+|+|.|+..|...|-..+.. ||.
T Consensus 64 ~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~--CP~ 94 (106)
T 3dpl_R 64 EECTVAWGVCNHAFHFHCISRWLKTRQV--CPL 94 (106)
T ss_dssp -CCCEEEETTSCEEEHHHHHHHHTTCSB--CSS
T ss_pred ccceEeecccCcEECHHHHHHHHHcCCc--CcC
Confidence 5676777789999999999999665443 454
No 169
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=46.58 E-value=8.8 Score=32.47 Aligned_cols=27 Identities=30% Similarity=0.768 Sum_probs=20.4
Q ss_pred CccCccccceeeecCCcceEEec-ccccc
Q 009997 373 WRRCQQCRRMIELTHGCYHMTCW-CGHEF 400 (520)
Q Consensus 373 ~k~CP~C~~~IeK~~GCnhMtC~-Cg~~F 400 (520)
.-.||+|+.-..-.+|=. +.|+ |+|+|
T Consensus 27 lP~CP~C~seytYeDg~l-~vCPeC~hEW 54 (138)
T 2akl_A 27 LPPCPQCNSEYTYEDGAL-LVCPECAHEW 54 (138)
T ss_dssp SCCCTTTCCCCCEECSSS-EEETTTTEEE
T ss_pred CCCCCCCCCcceEecCCe-EECCcccccc
Confidence 379999999877777754 7776 77765
No 170
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=45.87 E-value=9.6 Score=29.93 Aligned_cols=27 Identities=22% Similarity=0.543 Sum_probs=20.2
Q ss_pred ccCccccce------eeecCCcceEEec-ccccc
Q 009997 374 RRCQQCRRM------IELTHGCYHMTCW-CGHEF 400 (520)
Q Consensus 374 k~CP~C~~~------IeK~~GCnhMtC~-Cg~~F 400 (520)
-.||-|++. |.|..|=-+++|+ ||..|
T Consensus 24 F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~ 57 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEF 57 (85)
T ss_dssp CCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEE
T ss_pred EcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeE
Confidence 689999886 4455777888885 77766
No 171
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=45.73 E-value=12 Score=24.35 Aligned_cols=25 Identities=24% Similarity=0.583 Sum_probs=19.3
Q ss_pred cCccccce---eeecCCcceEEec-cccc
Q 009997 375 RCQQCRRM---IELTHGCYHMTCW-CGHE 399 (520)
Q Consensus 375 ~CP~C~~~---IeK~~GCnhMtC~-Cg~~ 399 (520)
.||.|+.+ +.+..+=..+.|. ||+.
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCc
Confidence 58999876 6666777888896 8875
No 172
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=44.82 E-value=4.9 Score=35.05 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=25.0
Q ss_pred ccCccccceeeecCCcceEEecccccccccccccccC
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRD 410 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~~ 410 (520)
-.||-|...+. +-++-.|||.||+.|...|-.
T Consensus 79 ~~C~IC~~~~~-----~pv~~~CgH~fC~~Ci~~~~~ 110 (150)
T 1z6u_A 79 FMCVCCQELVY-----QPVTTECFHNVCKDCLQRSFK 110 (150)
T ss_dssp TBCTTTSSBCS-----SEEECTTSCEEEHHHHHHHHH
T ss_pred CEeecCChhhc-----CCEEcCCCCchhHHHHHHHHH
Confidence 58999988775 345557999999999988854
No 173
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=43.83 E-value=5.9 Score=29.97 Aligned_cols=25 Identities=28% Similarity=0.706 Sum_probs=17.2
Q ss_pred CccCccccceeeecCCcceEEec-ccc
Q 009997 373 WRRCQQCRRMIELTHGCYHMTCW-CGH 398 (520)
Q Consensus 373 ~k~CP~C~~~IeK~~GCnhMtC~-Cg~ 398 (520)
.-.|+.|+..++...+ .-+.|+ ||+
T Consensus 28 ~Y~C~~CG~~~e~~~~-d~irCp~CG~ 53 (70)
T 1twf_L 28 KYICAECSSKLSLSRT-DAVRCKDCGH 53 (70)
T ss_dssp CEECSSSCCEECCCTT-STTCCSSSCC
T ss_pred EEECCCCCCcceeCCC-CCccCCCCCc
Confidence 3679999999887644 445564 655
No 174
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=42.75 E-value=11 Score=33.00 Aligned_cols=29 Identities=21% Similarity=0.468 Sum_probs=23.2
Q ss_pred ccCcc--ccceeeecCCcceEEe-cccccccc
Q 009997 374 RRCQQ--CRRMIELTHGCYHMTC-WCGHEFCY 402 (520)
Q Consensus 374 k~CP~--C~~~IeK~~GCnhMtC-~Cg~~FCy 402 (520)
+.||+ |+.-+.-..-=+..+| +||+.+++
T Consensus 119 ~~c~~~~cg~g~fma~h~~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 119 RECSNPTCGAGVFLANHKDRLYCGKCHSVYKV 150 (152)
T ss_dssp CBCCSTTSCSSSBEEECSSCEEESSSSSCCEE
T ss_pred CcCCCccCCCceEecccCCCcccCCCceEEEe
Confidence 88999 9997766544478899 69998876
No 175
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=42.36 E-value=25 Score=27.62 Aligned_cols=41 Identities=27% Similarity=0.624 Sum_probs=29.3
Q ss_pred CceeccCCCCCeeecCcccccccccCCCCCCCCceeCCCCCcceeccCCCccCCCCCchh
Q 009997 289 DRIYCPFPNCSVLLDPRECLSARASSSSQSDNSCVECPVCERFICVECGVPWHSSLSCEE 348 (520)
Q Consensus 289 ~~~~CP~p~C~~~~~~~~~~~~~~~~~~~~~~~~~~Cp~C~~~fC~~C~~~wH~~~tC~e 348 (520)
....|..++|..... .-+.|..|+..||...+.+- .+.|..
T Consensus 24 ~~~~C~~~~Ck~~~~-----------------l~f~C~~C~~~FC~~HR~~e--~H~C~~ 64 (86)
T 1wfe_A 24 KSYSCSFKGCTDVEL-----------------VAVICPYCEKNFCLRHRHQS--DHDCEK 64 (86)
T ss_dssp CCEECCSTTCCCEES-----------------SCEECTTTCCEECGGGCSTG--GGTCSS
T ss_pred CCCCCCCcCCCCCCc-----------------cceECCCCCcccccccCCcc--CCCCCC
Confidence 346799999986532 12899999999999987642 345654
No 176
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=42.35 E-value=10 Score=29.20 Aligned_cols=25 Identities=24% Similarity=0.545 Sum_probs=17.4
Q ss_pred cccCCCCcCcccchHH-HhhcCCcccHH
Q 009997 248 IRCPQLRCKYFISTVE-CKSFLPLSSYE 274 (520)
Q Consensus 248 i~CP~~~C~~~l~~~~-i~~~L~~~~~e 274 (520)
.+||. |+..|...+ |.+.|..+.++
T Consensus 9 ~~~Pl--CG~~L~W~eLIeQML~~en~~ 34 (95)
T 2k5c_A 9 AKCPI--CGSPLKWEELIEEMLIIENFE 34 (95)
T ss_dssp EECSS--SCCEECHHHHHHHSTTCSTHH
T ss_pred ccCCc--CCCccCHHHHHHHHHhhccHH
Confidence 47999 999998654 55666655443
No 177
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=42.06 E-value=12 Score=33.96 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=19.4
Q ss_pred ccCcccccee-eecCCcceEEe-cccccccc
Q 009997 374 RRCQQCRRMI-ELTHGCYHMTC-WCGHEFCY 402 (520)
Q Consensus 374 k~CP~C~~~I-eK~~GCnhMtC-~Cg~~FCy 402 (520)
+.||+|+..+ .-...+.| +| +|++.|+|
T Consensus 114 ~~Cp~Cg~g~fma~h~dR~-~CGkC~~t~~~ 143 (189)
T 2xzm_9 114 KGCPKCGPGIFMAKHYDRH-YCGKCHLTLKI 143 (189)
T ss_dssp EECSTTCSSCEEEECSSCE-EETTTCCCBCC
T ss_pred ccCCccCCCccccCccCCC-ccCCceeEEEe
Confidence 8899999764 44556655 88 57777643
No 178
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=41.76 E-value=11 Score=33.82 Aligned_cols=24 Identities=21% Similarity=0.552 Sum_probs=20.3
Q ss_pred ccCccccceeeecCCcceEEec-cccc
Q 009997 374 RRCQQCRRMIELTHGCYHMTCW-CGHE 399 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~-Cg~~ 399 (520)
-.|++|+.+..+.+ ++|.|+ ||..
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp~~g~~ 165 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCPECGRV 165 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECSSSCCE
T ss_pred ecccccCCceEECC--CEEECCCCCCE
Confidence 58999999998876 999996 8864
No 179
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=40.81 E-value=18 Score=26.02 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=15.8
Q ss_pred ccCccccc-eeeecCCcceEEec-ccc
Q 009997 374 RRCQQCRR-MIELTHGCYHMTCW-CGH 398 (520)
Q Consensus 374 k~CP~C~~-~IeK~~GCnhMtC~-Cg~ 398 (520)
..||.|+. .|....-=.-+.|. ||.
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICPECGL 38 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECTTTCC
T ss_pred ccCcCCCCCceeEeCCCCeEEeCCCCC
Confidence 68999976 55555444456664 553
No 180
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=38.67 E-value=8.6 Score=30.33 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=14.1
Q ss_pred CCccCccccceeeecCCcc
Q 009997 372 RWRRCQQCRRMIELTHGCY 390 (520)
Q Consensus 372 ~~k~CP~C~~~IeK~~GCn 390 (520)
..+.||+|++...+..|+-
T Consensus 57 G~q~CpqCktrYkr~kgsp 75 (93)
T 1weo_A 57 GTQNCPQCKTRYKRLRGSP 75 (93)
T ss_dssp SCSSCTTTCCCCCCCTTCC
T ss_pred cCccccccCCccccccCCC
Confidence 3489999999887655543
No 181
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=36.60 E-value=16 Score=37.10 Aligned_cols=33 Identities=24% Similarity=0.572 Sum_probs=24.8
Q ss_pred CccCccccceeeecCCcceEEecccccccccccccccC
Q 009997 373 WRRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRD 410 (520)
Q Consensus 373 ~k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~~ 410 (520)
...||-|..... +-+.-.|||.||+.|...|..
T Consensus 332 ~~~C~ICle~~~-----~pv~lpCGH~FC~~Ci~~wl~ 364 (389)
T 2y1n_A 332 FQLCKICAENDK-----DVKIEPCGHLMCTSCLTSWQE 364 (389)
T ss_dssp SSBCTTTSSSBC-----CEEEETTCCEECHHHHHHHHH
T ss_pred CCCCCccCcCCC-----CeEEeCCCChhhHHHHHHHHh
Confidence 478999977663 234446999999999988854
No 182
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=36.22 E-value=84 Score=26.98 Aligned_cols=50 Identities=26% Similarity=0.622 Sum_probs=35.3
Q ss_pred CCccccccccccccCCCCeeec-cCCCcccHHHHHHHHH----Hhh--hCCCCccccCCCCcCc
Q 009997 201 DKSPENCSICCEDKPYPMMITM-KCSHKFCSHCMRTYID----GKV--QSSQVPIRCPQLRCKY 257 (520)
Q Consensus 201 ~~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~~i~----~~i--~~~~~~i~CP~~~C~~ 257 (520)
+.....|.+|.+. .+++-. .|...||..|+..-+. ..| ..+.|. ||. |..
T Consensus 60 Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~--C~~--C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWY--CYI--CHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCC--CTT--TCC
T ss_pred CCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCE--eec--ccC
Confidence 4456889999864 456666 8999999999997663 233 345564 887 654
No 183
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=35.81 E-value=28 Score=25.97 Aligned_cols=30 Identities=23% Similarity=0.484 Sum_probs=23.0
Q ss_pred ccCccccceeeecCCcceEEeccccc-ccccccccc
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHE-FCYSCGAEY 408 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~-FCy~C~~~~ 408 (520)
..||-|..... +-++=+|||. ||+.|...|
T Consensus 25 ~~C~iC~~~~~-----~~~~~pCgH~~~C~~C~~~~ 55 (74)
T 4ic3_A 25 KLCKICMDRNI-----AIVFVPCGHLVTCKQCAEAV 55 (74)
T ss_dssp TBCTTTSSSBC-----CEEEETTCCBCCCHHHHTTC
T ss_pred CCCCCCCCCCC-----CEEEcCCCChhHHHHhhhcC
Confidence 68999987654 2233369999 999999888
No 184
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.82 E-value=12 Score=27.55 Aligned_cols=40 Identities=20% Similarity=0.449 Sum_probs=28.0
Q ss_pred ceeccCCCCCeeecCcccccccccCCCCCCCCceeCCCCCcceeccCCCccCCCCCchh
Q 009997 290 RIYCPFPNCSVLLDPRECLSARASSSSQSDNSCVECPVCERFICVECGVPWHSSLSCEE 348 (520)
Q Consensus 290 ~~~CP~p~C~~~~~~~~~~~~~~~~~~~~~~~~~~Cp~C~~~fC~~C~~~wH~~~tC~e 348 (520)
...|..++|.... ..-+.|..|+..||...+.+ ..+.|..
T Consensus 12 ~~~Cs~~~Ck~~~-----------------ll~f~C~~C~~~FC~~HR~~--e~H~C~~ 51 (63)
T 1x4v_A 12 TNKCERAGCRQRE-----------------MMKLTCERCSRNFCIKHRHP--LDHDCSG 51 (63)
T ss_dssp CCCCCSTTCCCCC-----------------SSCCBCSSSCCBCCHHHHST--TSSCCCS
T ss_pred CCCCCccCCCCCC-----------------ccceECCCCCcccCcccCCc--cCCcCCC
Confidence 3478888887541 11278999999999987754 3456754
No 185
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=33.25 E-value=18 Score=30.99 Aligned_cols=32 Identities=19% Similarity=0.585 Sum_probs=23.5
Q ss_pred ccccccccccccCC--CCeeec-cCCCcccHHHHH
Q 009997 203 SPENCSICCEDKPY--PMMITM-KCSHKFCSHCMR 234 (520)
Q Consensus 203 ~~~~C~IC~e~~~~--~~~~~l-~CgH~fC~~Cl~ 234 (520)
....|.+|..++.. +.-..+ .|.|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 35789999999842 223344 899999999864
No 186
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=33.00 E-value=40 Score=26.17 Aligned_cols=60 Identities=22% Similarity=0.355 Sum_probs=32.6
Q ss_pred cceeccCCCccCCCCCchhhhcCchhhcCchHHHHHHHHhccCCccCccccceeeecCCcceEEec--cccccccccccc
Q 009997 330 RFICVECGVPWHSSLSCEEYQNLPLEERDAGDITLHRLAQNKRWRRCQQCRRMIELTHGCYHMTCW--CGHEFCYSCGAE 407 (520)
Q Consensus 330 ~~fC~~C~~~wH~~~tC~e~~~~~~~~~~~~~~~l~~l~~~~~~k~CP~C~~~IeK~~GCnhMtC~--Cg~~FCy~C~~~ 407 (520)
..+|..|...-|....|.+. .+|.+|+..-.... .|. =...+||.|++.
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~~------------------------~rcY~c~~~gh~~~-----~c~~p~~~~~CYnCG~~ 55 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPSI------------------------WRAYILVDDNEKAK-----PKVLPFHTIYCYNCGGK 55 (83)
T ss_dssp --CCSSSCCSSSCGGGCGGG------------------------TCCCCBC------------------CCCBCSSSSCB
T ss_pred cCCCCCCCCCCCccccCCCc------------------------ccccccccCCcccc-----cccCCCCCCeecccCCC
Confidence 45788899888988888541 24666664311111 122 245799999976
Q ss_pred ccCCCCcccCCCCC
Q 009997 408 YRDGQQTCQCAFWD 421 (520)
Q Consensus 408 ~~~~~~~c~C~~~~ 421 (520)
||..-.|+.-.
T Consensus 56 ---GH~~rdC~~~r 66 (83)
T 3nyb_B 56 ---GHFGDDCKEKR 66 (83)
T ss_dssp ---SSCGGGCSSCC
T ss_pred ---CcCcccCCccc
Confidence 44444566543
No 187
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=32.95 E-value=70 Score=25.19 Aligned_cols=49 Identities=22% Similarity=0.569 Sum_probs=33.3
Q ss_pred ccccccccccccCC----CCeeec-cCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCccc
Q 009997 203 SPENCSICCEDKPY----PMMITM-KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFI 259 (520)
Q Consensus 203 ~~~~C~IC~e~~~~----~~~~~l-~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l 259 (520)
....|.||-++.-. +.|+.+ .|+-..|+.|+.--.. ++. -.||+ |+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErk----eG~--q~Cpq--CktrY 68 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERR----EGT--QNCPQ--CKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHH----TSC--SSCTT--TCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHh----ccC--ccccc--cCCcc
Confidence 45789999998532 234445 7999999999864433 332 25988 87765
No 188
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=32.52 E-value=46 Score=28.23 Aligned_cols=44 Identities=18% Similarity=0.524 Sum_probs=31.0
Q ss_pred ccCCCCcCc---ccchHHHhhcCCcccHHHHHHHHHHHhhcCCCceeccCCCCCeeecC
Q 009997 249 RCPQLRCKY---FISTVECKSFLPLSSYESLETALAEANILHSDRIYCPFPNCSVLLDP 304 (520)
Q Consensus 249 ~CP~~~C~~---~l~~~~i~~~L~~~~~e~~~~~~~e~~~~~~~~~~CP~p~C~~~~~~ 304 (520)
.||. |+. .+....++.+|.++.++ +...++.+|++|+|...+..
T Consensus 3 ~CP~--Cg~~G~~V~~~Tvk~ll~~~~~~----------~~~~~y~~C~~~~C~VvYf~ 49 (130)
T 2hu9_A 3 RCPE--CSTEGWRVLPLTVGAHVKEGLWS----------KIKGDFYFCSLESCEVVYFN 49 (130)
T ss_dssp BCTT--TCCBCEEECHHHHHHHBCGGGGG----------GCCSCEEECCCTTCSEEEEC
T ss_pred cCCC--CCCcCcCccHHHHHHHhhHHHhc----------cCCCCEEeECCCCCCEEEEC
Confidence 5988 764 46777777777665432 33457889999999976653
No 189
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=31.92 E-value=30 Score=27.19 Aligned_cols=36 Identities=19% Similarity=0.454 Sum_probs=26.3
Q ss_pred CccccccccccccCCC-Ceeec-cCCCcccHHHHHHHH
Q 009997 202 KSPENCSICCEDKPYP-MMITM-KCSHKFCSHCMRTYI 237 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~-~~~~l-~CgH~fC~~Cl~~~i 237 (520)
.....|.+|...|... .-..+ .||+.||..|....+
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 4457899999887643 22445 899999999987643
No 190
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=31.60 E-value=8.4 Score=37.81 Aligned_cols=33 Identities=18% Similarity=0.556 Sum_probs=24.8
Q ss_pred ccCCccCccccceeeecC-CcceEEec-ccccccc
Q 009997 370 NKRWRRCQQCRRMIELTH-GCYHMTCW-CGHEFCY 402 (520)
Q Consensus 370 ~~~~k~CP~C~~~IeK~~-GCnhMtC~-Cg~~FCy 402 (520)
...|.+||+|+.+|-..+ .=|...|. |+|++=.
T Consensus 21 ~~l~~kc~~~~~~~~~~~l~~~~~v~~~~~~~~r~ 55 (304)
T 2f9y_B 21 EGVWTKCDSCGQVLYRAELERNLEVCPKCDHHMRM 55 (304)
T ss_dssp --CEECCTTTCCCEETTHHHHTTTBCTTTCCBCCC
T ss_pred HHHHHhhhhccchhhHHHHHHHhCCCCCCCCCCCC
Confidence 356899999999998873 33778895 9988743
No 191
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=30.85 E-value=24 Score=25.61 Aligned_cols=29 Identities=21% Similarity=0.487 Sum_probs=21.7
Q ss_pred ccccccccccCCCCeeec-cCCCcccHHHH
Q 009997 205 ENCSICCEDKPYPMMITM-KCSHKFCSHCM 233 (520)
Q Consensus 205 ~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl 233 (520)
..|--|...++....+.. .|++.||.+|=
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD 45 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCD 45 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHH
T ss_pred CcccccCcccCCCccEECCccCcCcccchh
Confidence 358888887764444555 89999999994
No 192
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=30.44 E-value=24 Score=28.32 Aligned_cols=17 Identities=18% Similarity=0.741 Sum_probs=14.3
Q ss_pred cccHHHHHHHHHHhhhC
Q 009997 227 KFCSHCMRTYIDGKVQS 243 (520)
Q Consensus 227 ~fC~~Cl~~~i~~~i~~ 243 (520)
-||+.||.+|+..+-.+
T Consensus 42 GFCRNCLskWy~~aA~e 58 (105)
T 2o35_A 42 GFCRNCLSNWYREAAEA 58 (105)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 38999999999887654
No 193
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=30.28 E-value=32 Score=30.26 Aligned_cols=37 Identities=24% Similarity=0.734 Sum_probs=27.9
Q ss_pred CCCCccccccccccccCCCCeeecc---CCCcccHHHHHHHHH
Q 009997 199 QGDKSPENCSICCEDKPYPMMITMK---CSHKFCSHCMRTYID 238 (520)
Q Consensus 199 ~~~~~~~~C~IC~e~~~~~~~~~l~---CgH~fC~~Cl~~~i~ 238 (520)
..+.....|.||.+. .+++.+. |...||..|+...+.
T Consensus 74 DeDG~~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 74 DDDGYQSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp CTTSSBSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CCCCCcceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcC
Confidence 345567899999864 3555554 889999999998763
No 194
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=29.85 E-value=23 Score=32.71 Aligned_cols=33 Identities=33% Similarity=0.814 Sum_probs=25.0
Q ss_pred ccCccccceeeecCCcceEEec-ccccccccccccc
Q 009997 374 RRCQQCRRMIELTHGCYHMTCW-CGHEFCYSCGAEY 408 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~-Cg~~FCy~C~~~~ 408 (520)
..|+.|+..+-. ---.-.|+ ||.-||..|....
T Consensus 162 ~~C~~C~~~F~~--~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 162 RVCHRCRVEFTF--TNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp SBCTTTCCBCCS--SSCCEECTTTCCEECSTTSCEE
T ss_pred CccCCCCCccCC--cccccccCCcCCEEChHHhCCe
Confidence 589999987642 23456787 9999999998653
No 195
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=28.63 E-value=28 Score=26.98 Aligned_cols=36 Identities=19% Similarity=0.384 Sum_probs=26.5
Q ss_pred CCccccccccccccCCC-Ceeec-cCCCcccHHHHHHH
Q 009997 201 DKSPENCSICCEDKPYP-MMITM-KCSHKFCSHCMRTY 236 (520)
Q Consensus 201 ~~~~~~C~IC~e~~~~~-~~~~l-~CgH~fC~~Cl~~~ 236 (520)
+.....|.+|...|... .-... .||+.||..|....
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 34567899999887643 22445 89999999998654
No 196
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=28.35 E-value=46 Score=24.23 Aligned_cols=36 Identities=19% Similarity=0.508 Sum_probs=24.5
Q ss_pred CCccCccccceeeecCCcceEEecccccccccccccccCCCCcccCCCCCCCc
Q 009997 372 RWRRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDGQQTCQCAFWDEDN 424 (520)
Q Consensus 372 ~~k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~~~~~~c~C~~~~~~~ 424 (520)
.++.||+|++..- .+.|-.||.+...-|. +.|..++
T Consensus 5 ~mr~C~~CgvYTL-------------k~~CP~CG~~T~~~hP----arfSp~D 40 (60)
T 2apo_B 5 RMKKCPKCGLYTL-------------KEICPKCGEKTVIPKP----PKFSLED 40 (60)
T ss_dssp CCEECTTTCCEES-------------SSBCSSSCSBCBCCCC----CCCCTTC
T ss_pred hceeCCCCCCEec-------------cccCcCCCCcCCCCCC----CCCCCCc
Confidence 4589999998765 3457788887765442 4566654
No 197
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=27.82 E-value=19 Score=26.57 Aligned_cols=28 Identities=21% Similarity=0.513 Sum_probs=20.1
Q ss_pred CCccCccccceeeecCCcceEEec-ccccc
Q 009997 372 RWRRCQQCRRMIELTHGCYHMTCW-CGHEF 400 (520)
Q Consensus 372 ~~k~CP~C~~~IeK~~GCnhMtC~-Cg~~F 400 (520)
..-.|..|+..++...+ .-|.|+ ||+..
T Consensus 20 v~Y~C~~Cg~~~~l~~~-~~iRC~~CG~RI 48 (63)
T 3h0g_L 20 MIYLCADCGARNTIQAK-EVIRCRECGHRV 48 (63)
T ss_dssp CCCBCSSSCCBCCCCSS-SCCCCSSSCCCC
T ss_pred eEEECCCCCCeeecCCC-CceECCCCCcEE
Confidence 34688889888887655 568886 77754
No 198
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=27.08 E-value=1.2e+02 Score=27.87 Aligned_cols=33 Identities=24% Similarity=0.556 Sum_probs=24.9
Q ss_pred cccccccccccCCC-Ceeec-cCCCcccHHHHHHH
Q 009997 204 PENCSICCEDKPYP-MMITM-KCSHKFCSHCMRTY 236 (520)
Q Consensus 204 ~~~C~IC~e~~~~~-~~~~l-~CgH~fC~~Cl~~~ 236 (520)
...|.+|...|... .-..+ .||+.||..|....
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 35899999877643 22455 89999999998754
No 199
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=27.03 E-value=23 Score=28.42 Aligned_cols=17 Identities=18% Similarity=0.722 Sum_probs=14.0
Q ss_pred cccHHHHHHHHHHhhhC
Q 009997 227 KFCSHCMRTYIDGKVQS 243 (520)
Q Consensus 227 ~fC~~Cl~~~i~~~i~~ 243 (520)
-||+.||.+|+..+-.+
T Consensus 41 GFCRNCLskWy~~aA~~ 57 (104)
T 3fyb_A 41 DFCRNCLAKWLMEAATE 57 (104)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 38999999999877653
No 200
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=26.95 E-value=28 Score=26.82 Aligned_cols=35 Identities=20% Similarity=0.549 Sum_probs=25.5
Q ss_pred CccccccccccccCCCC-eeec-cCCCcccHHHHHHH
Q 009997 202 KSPENCSICCEDKPYPM-MITM-KCSHKFCSHCMRTY 236 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~~-~~~l-~CgH~fC~~Cl~~~ 236 (520)
.....|.+|...|.... -... .||..||..|....
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 34568999998876432 2345 89999999998653
No 201
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=25.54 E-value=27 Score=30.46 Aligned_cols=32 Identities=25% Similarity=0.556 Sum_probs=21.7
Q ss_pred ceeccCCCCCe--eecCcccccccccCCCCCCCCceeCCCCCcceecc
Q 009997 290 RIYCPFPNCSV--LLDPRECLSARASSSSQSDNSCVECPVCERFICVE 335 (520)
Q Consensus 290 ~~~CP~p~C~~--~~~~~~~~~~~~~~~~~~~~~~~~Cp~C~~~fC~~ 335 (520)
+..||.+.|+. ++-... ....|-+|+..+++.
T Consensus 118 ~~~c~~~~cg~g~fma~h~--------------~r~~cgkc~~t~~~~ 151 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLANHK--------------DRLYCGKCHSVYKVN 151 (152)
T ss_dssp SCBCCSTTSCSSSBEEECS--------------SCEEESSSSSCCEEC
T ss_pred cCcCCCccCCCceEecccC--------------CCcccCCCceEEEec
Confidence 46899999986 443221 137899999888753
No 202
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=25.00 E-value=39 Score=26.45 Aligned_cols=35 Identities=17% Similarity=0.392 Sum_probs=25.5
Q ss_pred CccccccccccccCCC-Ceeec-cCCCcccHHHHHHH
Q 009997 202 KSPENCSICCEDKPYP-MMITM-KCSHKFCSHCMRTY 236 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~-~~~~l-~CgH~fC~~Cl~~~ 236 (520)
.....|.+|...|... .-..+ .||+.||..|....
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 3456899999887643 22445 89999999998653
No 203
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.97 E-value=19 Score=26.92 Aligned_cols=33 Identities=36% Similarity=0.718 Sum_probs=22.9
Q ss_pred ccCccccceeeecCCcceEEeccccccccccccc
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAE 407 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~ 407 (520)
.+|-.|+..+...+ =.-+.|+||..||-.-.-+
T Consensus 16 ~rC~~C~kk~gL~~-~egf~CrCg~~FC~~HRy~ 48 (67)
T 1x4w_A 16 RRCFQCQTKLELVQ-QELGSCRCGYVFCMLHRLP 48 (67)
T ss_dssp TBCSSSCCBCCHHH-HHHHCCSSSCCCCTTTCST
T ss_pred CcchhhCCeecccc-cCceEecCCCEehhccCCc
Confidence 68999998876441 0015689999999776543
No 204
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=24.82 E-value=19 Score=32.44 Aligned_cols=71 Identities=18% Similarity=0.240 Sum_probs=41.1
Q ss_pred ccccccccccCCCC----eeec-cCCCcccHHHHHHHHH--HhhhC--CCCccccCCCCcCcccchHHHhhcCCcccHHH
Q 009997 205 ENCSICCEDKPYPM----MITM-KCSHKFCSHCMRTYID--GKVQS--SQVPIRCPQLRCKYFISTVECKSFLPLSSYES 275 (520)
Q Consensus 205 ~~C~IC~e~~~~~~----~~~l-~CgH~fC~~Cl~~~i~--~~i~~--~~~~i~CP~~~C~~~l~~~~i~~~L~~~~~e~ 275 (520)
..|+||-..+..++ |+.+ .|...|...|+.-.-+ ..+.. ......||. |...-+.. .+..+..++...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~--C~~~~~~~-~~~~~~~el~~~ 79 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVN--CTERHPAE-WRLALEKELQIS 79 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTT--TCCSSSCH-HHHHHHHHHHHH
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcC--CCCCCCHH-HHHHHHHHHHHH
Confidence 46999988776554 8888 8998898899864321 11211 012457988 77654432 333333344343
Q ss_pred HHH
Q 009997 276 LET 278 (520)
Q Consensus 276 ~~~ 278 (520)
+.+
T Consensus 80 l~~ 82 (183)
T 3lqh_A 80 LKQ 82 (183)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 205
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=24.13 E-value=34 Score=31.77 Aligned_cols=33 Identities=30% Similarity=0.902 Sum_probs=24.3
Q ss_pred ccCccccceeeecCCcceEEec-ccccccccccccc
Q 009997 374 RRCQQCRRMIELTHGCYHMTCW-CGHEFCYSCGAEY 408 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~-Cg~~FCy~C~~~~ 408 (520)
..|+.|+..+-.. --.-.|+ ||.-||..|....
T Consensus 165 ~~C~~C~~~F~~~--~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 165 EECHRCRVQFGVM--TRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp SBCTTTCCBCBTT--BCCEECTTTCCEECTTTCCEE
T ss_pred CCCcCcCCCCCcc--ccccccCCCcCEeChhhcCCc
Confidence 4788888776532 3456787 9999999998653
No 206
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=24.03 E-value=25 Score=33.58 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=29.7
Q ss_pred ccCccccceeeecCCcceEEe-cccccccccccccccCCCCcccCCC
Q 009997 374 RRCQQCRRMIELTHGCYHMTC-WCGHEFCYSCGAEYRDGQQTCQCAF 419 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC-~Cg~~FCy~C~~~~~~~~~~c~C~~ 419 (520)
-.||=|..++. +-++- .|||.||-.|...|-..+....||.
T Consensus 182 l~CPIcl~~f~-----DPVts~~CGHsFcR~cI~~~~~~~~~~~CPv 223 (267)
T 3htk_C 182 LTCPITCKPYE-----APLISRKCNHVFDRDGIQNYLQGYTTRDCPQ 223 (267)
T ss_dssp SBCTTTSSBCS-----SEEEESSSCCEEEHHHHHHHSTTCSCEECSG
T ss_pred eECcCccCccc-----CCeeeCCCCCcccHHHHHHHHHhCCCCCCCc
Confidence 68999998885 55777 5999999999877654333345664
No 207
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=23.64 E-value=68 Score=20.72 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=19.9
Q ss_pred ceeCCCCCcceeccCCC-ccCCCCC
Q 009997 322 CVECPVCERFICVECGV-PWHSSLS 345 (520)
Q Consensus 322 ~~~Cp~C~~~fC~~C~~-~wH~~~t 345 (520)
.+.|..|+...|..|.. .-|.++.
T Consensus 14 ~lfC~~d~~~iC~~C~~~~~H~~H~ 38 (42)
T 1fre_A 14 KLYCKDDGTLSCVICRDSLKHASHN 38 (42)
T ss_dssp CCCCCSSSSSSCCTTSSCSSCTTCC
T ss_pred eEEeCCCCeEEeccCCCCCCCCCCc
Confidence 47899999999999997 5687763
No 208
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=23.15 E-value=42 Score=28.57 Aligned_cols=36 Identities=25% Similarity=0.484 Sum_probs=22.8
Q ss_pred CCCceeccCCCCCeeecCcccccccccCCCCCCCCceeCCCCCcce
Q 009997 287 HSDRIYCPFPNCSVLLDPRECLSARASSSSQSDNSCVECPVCERFI 332 (520)
Q Consensus 287 ~~~~~~CP~p~C~~~~~~~~~~~~~~~~~~~~~~~~~~Cp~C~~~f 332 (520)
.....+||. |+.++.+.+... .....+.|+.|++..
T Consensus 21 ~~~~~FCPe--CgNmL~pked~~--------~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 21 MTTFRFCRD--CNNMLYPREDKE--------NNRLLFECRTCSYVE 56 (133)
T ss_dssp -CCCCBCTT--TCCBCBCCBCTT--------TCCBCCBCSSSCCBC
T ss_pred ccCCeeCCC--CCCEeeECccCC--------CceeEEECCCCCCcE
Confidence 346789996 999987754210 012347888888753
No 209
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=23.02 E-value=45 Score=25.92 Aligned_cols=33 Identities=18% Similarity=0.401 Sum_probs=19.6
Q ss_pred CCCceeccCCCCCeeecCcccccccccCCCCCCCCceeCCCCCccee
Q 009997 287 HSDRIYCPFPNCSVLLDPRECLSARASSSSQSDNSCVECPVCERFIC 333 (520)
Q Consensus 287 ~~~~~~CP~p~C~~~~~~~~~~~~~~~~~~~~~~~~~~Cp~C~~~fC 333 (520)
......||+ |+.-..... ......|+.|++.|-
T Consensus 24 q~~~y~Cp~--CG~~~v~r~------------atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 24 MNEDHACPN--CGEDRVDRQ------------GTGIWQCSYCDYKFT 56 (83)
T ss_dssp HHSCEECSS--SCCEEEEEE------------ETTEEEETTTCCEEE
T ss_pred ccccCcCCC--CCCcceecc------------CCCeEECCCCCCEec
Confidence 345678997 775332211 112378998888774
No 210
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.77 E-value=35 Score=26.34 Aligned_cols=34 Identities=24% Similarity=0.523 Sum_probs=24.7
Q ss_pred CccccccccccccCCC-Ceeec-cCCCcccHHHHHH
Q 009997 202 KSPENCSICCEDKPYP-MMITM-KCSHKFCSHCMRT 235 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~-~~~~l-~CgH~fC~~Cl~~ 235 (520)
.....|.+|...|... .-... .||..||..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 4457899999887543 22345 8999999999654
No 211
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=22.62 E-value=34 Score=32.79 Aligned_cols=21 Identities=24% Similarity=0.548 Sum_probs=15.5
Q ss_pred ccCccccceeeec--CCcceEEe
Q 009997 374 RRCQQCRRMIELT--HGCYHMTC 394 (520)
Q Consensus 374 k~CP~C~~~IeK~--~GCnhMtC 394 (520)
++||+|+.+|++. +|=.-..|
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~C 265 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFC 265 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEEC
T ss_pred CCCCCCCCEeeEEEECCCceEEC
Confidence 7999999999986 45443444
No 212
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=22.51 E-value=40 Score=25.41 Aligned_cols=15 Identities=33% Similarity=0.749 Sum_probs=8.9
Q ss_pred ccCccccceeeecCCc
Q 009997 374 RRCQQCRRMIELTHGC 389 (520)
Q Consensus 374 k~CP~C~~~IeK~~GC 389 (520)
-.|| |+...--..|=
T Consensus 5 v~C~-C~~~~~~~~~~ 19 (71)
T 1gh9_A 5 FRCD-CGRALYSREGA 19 (71)
T ss_dssp EEET-TSCCEEEETTC
T ss_pred EECC-CCCEEEEcCCC
Confidence 4677 77765544443
No 213
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=22.43 E-value=58 Score=24.78 Aligned_cols=27 Identities=26% Similarity=0.560 Sum_probs=20.4
Q ss_pred eeCCCCCcceeccCCCccCCCCCchhhhc
Q 009997 323 VECPVCERFICVECGVPWHSSLSCEEYQN 351 (520)
Q Consensus 323 ~~Cp~C~~~fC~~C~~~wH~~~tC~e~~~ 351 (520)
+.|..|+..||...+.+ ..+.|.....
T Consensus 30 f~C~~C~~~FC~~HR~~--e~H~C~~~~~ 56 (75)
T 1wys_A 30 FVCDGCSGIFCLEHRSK--DSHGCSEVNV 56 (75)
T ss_dssp EECTTTCCEECSTTCSS--GGGTCCCCSS
T ss_pred eECcccCcCcCcccCCc--cccCCCCCcc
Confidence 89999999999998865 2456765443
No 214
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=22.43 E-value=35 Score=32.80 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=15.2
Q ss_pred ccCccccceeeec--CCcceEEe
Q 009997 374 RRCQQCRRMIELT--HGCYHMTC 394 (520)
Q Consensus 374 k~CP~C~~~IeK~--~GCnhMtC 394 (520)
++||+|+.+|++. +|=+--.|
T Consensus 246 ~pC~~CG~~I~~~~~~gR~t~~C 268 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVAGRGTHYC 268 (273)
T ss_dssp SBCTTTCCBCEEEEETTEEEEEC
T ss_pred CCCCCCCCeEEEEEECCCCeEEC
Confidence 7999999999985 45333333
No 215
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=22.14 E-value=1.5e+02 Score=24.42 Aligned_cols=51 Identities=10% Similarity=-0.048 Sum_probs=34.8
Q ss_pred EEEeecCCCceEEEe-ecccccch---hhHHHHHHHHHHHHHHHHcCcceeeeec
Q 009997 83 VVMERSFNIPIMQVQ-KKLDFFVE---ESVADYLALMDGLITAVQNKIRCVYAFT 133 (520)
Q Consensus 83 ~~i~~~~~~~~~~~~-~~~~~~~t---nn~AE~~ALi~~l~~a~~~~i~~v~i~~ 133 (520)
|-|.|..|+.+...| ..++|..+ ...|-..|.......+.++|++.|.++-
T Consensus 20 vtiTD~~G~~i~~~S~G~~gfKg~rk~tp~AA~~aa~~~~~~~~~~Gi~~v~v~v 74 (117)
T 3r8n_K 20 VTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMV 74 (117)
T ss_dssp EEEECTTSCCSEEEETGGGSCCGGGGSSHHHHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred EEEEcCCCCEEEEEcCCccccCCCccCCHHHHHHHHHHHHHHHHHhCCcEEEEEE
Confidence 447788888776655 45676432 2345556666667778889999998863
No 216
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=22.06 E-value=38 Score=32.34 Aligned_cols=13 Identities=31% Similarity=0.644 Sum_probs=12.1
Q ss_pred ccCccccceeeec
Q 009997 374 RRCQQCRRMIELT 386 (520)
Q Consensus 374 k~CP~C~~~IeK~ 386 (520)
++||+|+.+|++.
T Consensus 236 ~pC~~CG~~I~~~ 248 (266)
T 1ee8_A 236 LPCPACGRPVERR 248 (266)
T ss_dssp SBCTTTCCBCEEE
T ss_pred CCCCCCCCEeeEE
Confidence 8999999999986
No 217
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=21.92 E-value=38 Score=29.57 Aligned_cols=27 Identities=22% Similarity=0.541 Sum_probs=0.0
Q ss_pred ccccccc--ccCCCCeeec-cCCCcccHHH
Q 009997 206 NCSICCE--DKPYPMMITM-KCSHKFCSHC 232 (520)
Q Consensus 206 ~C~IC~e--~~~~~~~~~l-~CgH~fC~~C 232 (520)
.|.+|.. .+..+.-..+ .|.|.+|..|
T Consensus 70 ~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C 99 (153)
T 2zet_C 70 HCARCLQPYRLLLNSRRQCLECSLFVCKSC 99 (153)
T ss_dssp BCTTTCCBGGGCSSCCEECTTTCCEECGGG
T ss_pred cchhhcCccccccCCCCcCCCCCchhhccc
No 218
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=21.78 E-value=64 Score=24.07 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=26.2
Q ss_pred CccccccccccccCCCCeeec-cCCCcccHHHHHH
Q 009997 202 KSPENCSICCEDKPYPMMITM-KCSHKFCSHCMRT 235 (520)
Q Consensus 202 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~ 235 (520)
.....|.||-.......|+.+ .|...|...|+.-
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~ 50 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGI 50 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCC
Confidence 345679999877655567777 8998899999863
No 219
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=21.75 E-value=37 Score=25.49 Aligned_cols=32 Identities=19% Similarity=0.436 Sum_probs=23.5
Q ss_pred ccccccccccCCC-Ceeec-cCCCcccHHHHHHH
Q 009997 205 ENCSICCEDKPYP-MMITM-KCSHKFCSHCMRTY 236 (520)
Q Consensus 205 ~~C~IC~e~~~~~-~~~~l-~CgH~fC~~Cl~~~ 236 (520)
..|.+|...|... ..... .||+.||..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 4799999877643 22345 89999999998643
No 220
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=21.62 E-value=37 Score=32.51 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=15.3
Q ss_pred ccCccccceeeec--CCcceEEe
Q 009997 374 RRCQQCRRMIELT--HGCYHMTC 394 (520)
Q Consensus 374 k~CP~C~~~IeK~--~GCnhMtC 394 (520)
++||+|+.+|++. +|=+-..|
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~C 263 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFYC 263 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEEC
T ss_pred CCCCCCCCEeeEEEECCCceEEC
Confidence 7999999999986 44333334
No 221
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=21.28 E-value=38 Score=29.02 Aligned_cols=26 Identities=27% Similarity=0.570 Sum_probs=21.9
Q ss_pred ccCccccce---eeecCCcceEEec-cccc
Q 009997 374 RRCQQCRRM---IELTHGCYHMTCW-CGHE 399 (520)
Q Consensus 374 k~CP~C~~~---IeK~~GCnhMtC~-Cg~~ 399 (520)
-.||.|+.+ +.|..+=..+.|. ||+.
T Consensus 103 VlC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 132 (138)
T 1nee_A 103 VICHECNRPDTRIIREGRISLLKCEACGAK 132 (138)
T ss_dssp HHHTCCSSCSSCCEEETTTTEEECSTTSCC
T ss_pred EECCCCCCcCcEEEEcCCeEEEEccCCCCC
Confidence 689999986 7777889999996 9874
No 222
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=21.18 E-value=38 Score=32.27 Aligned_cols=21 Identities=29% Similarity=0.597 Sum_probs=15.4
Q ss_pred ccCccccceeeec--CCcceEEe
Q 009997 374 RRCQQCRRMIELT--HGCYHMTC 394 (520)
Q Consensus 374 k~CP~C~~~IeK~--~GCnhMtC 394 (520)
++||+|+.+|++. +|=.-..|
T Consensus 235 ~pC~~CG~~I~~~~~~gR~t~~C 257 (262)
T 1k3x_A 235 EPCERCGSIIEKTTLSSRPFYWC 257 (262)
T ss_dssp SBCTTTCCBCEEEEETTEEEEEC
T ss_pred CCCCCCCCEeEEEEECCCCeEEC
Confidence 7999999999986 44443444
No 223
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=20.68 E-value=32 Score=30.34 Aligned_cols=51 Identities=20% Similarity=0.453 Sum_probs=32.3
Q ss_pred CccccccccccccC-CCCeeec-cCCCcccHHHHHHHHHHhhhCCCCccccCCCCcCc
Q 009997 202 KSPENCSICCEDKP-YPMMITM-KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKY 257 (520)
Q Consensus 202 ~~~~~C~IC~e~~~-~~~~~~l-~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~ 257 (520)
.....| +|-.... ...|+.+ .|...|...|+.-....... .....||. |..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~--~~~~~C~~--C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAEL--IDEYVCPQ--CQS 58 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTT--CSSCCCHH--HHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccC--ccCeecCC--Ccc
Confidence 456789 9987653 4568888 89999999998532222111 12346887 754
No 224
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=20.53 E-value=21 Score=33.77 Aligned_cols=32 Identities=6% Similarity=-0.180 Sum_probs=23.6
Q ss_pred ccCccccceeeecCCcceEEecccccccccccccccC
Q 009997 374 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRD 410 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~Cg~~FCy~C~~~~~~ 410 (520)
-.||-|..... +-++=.|||.||..|...|-.
T Consensus 209 ~~c~i~~~~~~-----dPv~~~~gh~f~~~~i~~~~~ 240 (281)
T 2c2l_A 209 LCGKISFELMR-----EPCITPSGITYDRKDIEEHLQ 240 (281)
T ss_dssp TBCTTTCSBCS-----SEEECSSCCEEETTHHHHHHH
T ss_pred cCCcCcCCHhc-----CCeECCCCCEECHHHHHHHHH
Confidence 56888877664 345556999999999888743
No 225
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=20.09 E-value=39 Score=29.56 Aligned_cols=19 Identities=21% Similarity=0.737 Sum_probs=16.3
Q ss_pred ccCccccceeeecCCcceEEec--ccc
Q 009997 374 RRCQQCRRMIELTHGCYHMTCW--CGH 398 (520)
Q Consensus 374 k~CP~C~~~IeK~~GCnhMtC~--Cg~ 398 (520)
|.||+|+-.++ +|-|+ |||
T Consensus 111 k~CpnC~g~L~------~~~Crgh~Gy 131 (174)
T 1odh_A 111 KSCPNCNGPLK------LIPCRGHGGF 131 (174)
T ss_dssp SBCSSSCCBEE------EECCCTBTTB
T ss_pred CCCCCCCccee------eEeccCcCCC
Confidence 89999998887 78896 776
Done!