Query 009998
Match_columns 520
No_of_seqs 140 out of 179
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 19:50:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009998.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009998hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1340 Uncharacterized archae 99.6 1.7E-11 3.7E-16 124.6 34.9 220 89-323 9-242 (294)
2 COG1340 Uncharacterized archae 98.9 5.6E-06 1.2E-10 84.9 31.3 208 110-334 16-241 (294)
3 PRK03918 chromosome segregatio 98.1 0.0069 1.5E-07 70.1 33.0 30 90-119 456-485 (880)
4 TIGR02169 SMC_prok_A chromosom 97.9 0.017 3.7E-07 68.2 31.8 42 90-131 678-719 (1164)
5 TIGR02169 SMC_prok_A chromosom 97.9 0.017 3.7E-07 68.2 31.7 50 92-141 673-722 (1164)
6 KOG0161 Myosin class II heavy 97.9 0.019 4E-07 71.8 32.0 250 96-352 932-1202(1930)
7 TIGR02168 SMC_prok_B chromosom 97.8 0.038 8.1E-07 65.1 33.2 67 89-155 673-739 (1179)
8 PHA02562 46 endonuclease subun 97.8 0.02 4.4E-07 62.9 29.0 75 239-313 330-404 (562)
9 PRK11637 AmiB activator; Provi 97.8 0.025 5.4E-07 61.0 28.5 67 89-155 43-109 (428)
10 PRK04778 septation ring format 97.8 0.019 4.2E-07 64.2 27.8 69 267-335 376-444 (569)
11 PRK02224 chromosome segregatio 97.7 0.055 1.2E-06 63.1 32.2 46 89-134 345-390 (880)
12 COG1196 Smc Chromosome segrega 97.7 0.066 1.4E-06 64.8 33.6 55 91-145 672-726 (1163)
13 PRK02224 chromosome segregatio 97.7 0.14 3E-06 59.7 35.1 78 246-323 363-447 (880)
14 PRK03918 chromosome segregatio 97.7 0.17 3.6E-06 58.9 35.5 37 88-124 446-483 (880)
15 COG1196 Smc Chromosome segrega 97.7 0.047 1E-06 66.0 31.8 51 274-324 432-482 (1163)
16 TIGR02168 SMC_prok_B chromosom 97.7 0.098 2.1E-06 61.6 33.3 51 89-139 680-730 (1179)
17 TIGR00606 rad50 rad50. This fa 97.6 0.059 1.3E-06 65.9 30.2 143 173-328 821-967 (1311)
18 PF07888 CALCOCO1: Calcium bin 97.6 0.16 3.4E-06 56.9 30.6 185 91-295 141-325 (546)
19 PF00038 Filament: Intermediat 97.6 0.13 2.9E-06 52.7 28.6 45 89-133 50-94 (312)
20 COG1579 Zn-ribbon protein, pos 97.5 0.032 7E-07 56.4 22.3 170 114-318 17-186 (239)
21 TIGR00606 rad50 rad50. This fa 97.5 0.19 4.2E-06 61.6 33.2 242 112-368 417-675 (1311)
22 PRK11637 AmiB activator; Provi 97.4 0.12 2.7E-06 55.7 27.4 71 89-159 50-120 (428)
23 PF00261 Tropomyosin: Tropomyo 97.4 0.14 3.1E-06 51.2 25.4 218 93-323 1-225 (237)
24 PRK01156 chromosome segregatio 97.4 0.5 1.1E-05 55.5 33.4 28 90-117 473-500 (895)
25 KOG0964 Structural maintenance 97.3 0.084 1.8E-06 61.8 25.7 144 201-357 393-541 (1200)
26 PF10174 Cast: RIM-binding pro 97.3 0.17 3.6E-06 59.0 28.0 259 91-360 285-590 (775)
27 KOG0964 Structural maintenance 97.3 0.25 5.4E-06 58.1 28.4 244 90-362 682-932 (1200)
28 KOG0996 Structural maintenance 97.1 0.3 6.4E-06 58.4 27.8 69 255-323 523-591 (1293)
29 PRK01156 chromosome segregatio 97.1 0.78 1.7E-05 53.9 31.2 38 95-132 471-508 (895)
30 TIGR03185 DNA_S_dndD DNA sulfu 96.9 1.1 2.5E-05 51.0 31.9 49 90-138 206-254 (650)
31 PRK04778 septation ring format 96.9 1.1 2.3E-05 50.5 30.2 101 238-338 368-479 (569)
32 KOG0250 DNA repair protein RAD 96.9 0.25 5.4E-06 58.7 24.0 82 240-321 402-483 (1074)
33 PF05701 WEMBL: Weak chloropla 96.8 1 2.2E-05 50.3 27.5 28 89-116 133-160 (522)
34 KOG0933 Structural maintenance 96.7 0.83 1.8E-05 54.1 26.6 38 102-143 676-713 (1174)
35 KOG0161 Myosin class II heavy 96.7 1.5 3.2E-05 55.8 30.4 255 91-347 1609-1904(1930)
36 TIGR03185 DNA_S_dndD DNA sulfu 96.7 1.7 3.7E-05 49.6 30.8 44 97-140 206-249 (650)
37 PF12128 DUF3584: Protein of u 96.7 1.6 3.5E-05 53.4 30.1 73 86-158 600-672 (1201)
38 KOG1029 Endocytic adaptor prot 96.7 0.23 5E-06 57.1 21.0 41 248-288 551-591 (1118)
39 PF06160 EzrA: Septation ring 96.5 2 4.3E-05 48.4 28.1 107 243-349 348-461 (560)
40 PF05667 DUF812: Protein of un 96.4 2.6 5.6E-05 48.0 30.6 26 181-206 408-433 (594)
41 KOG0996 Structural maintenance 96.2 4.7 0.0001 48.8 31.4 14 498-511 1138-1151(1293)
42 KOG0250 DNA repair protein RAD 96.1 4.7 0.0001 48.4 31.9 46 330-383 456-501 (1074)
43 PF10174 Cast: RIM-binding pro 96.0 4.4 9.6E-05 47.5 31.2 90 247-336 295-386 (775)
44 KOG0979 Structural maintenance 96.0 1.1 2.3E-05 53.2 22.1 96 250-345 280-380 (1072)
45 KOG1029 Endocytic adaptor prot 95.9 4.3 9.3E-05 47.3 25.9 30 174-203 444-473 (1118)
46 PF07888 CALCOCO1: Calcium bin 95.9 4 8.8E-05 46.0 29.6 36 274-309 371-406 (546)
47 PRK04863 mukB cell division pr 95.8 5.7 0.00012 49.8 28.4 12 314-325 419-430 (1486)
48 PRK04863 mukB cell division pr 95.8 8.2 0.00018 48.5 31.6 165 172-336 433-632 (1486)
49 PRK09039 hypothetical protein; 95.8 2.4 5.2E-05 45.0 22.1 62 246-307 123-184 (343)
50 PF12128 DUF3584: Protein of u 95.7 4.3 9.3E-05 49.8 26.9 17 176-192 727-743 (1201)
51 TIGR02680 conserved hypothetic 95.7 8.2 0.00018 48.0 30.5 42 91-132 740-781 (1353)
52 COG1579 Zn-ribbon protein, pos 95.6 1.2 2.5E-05 45.3 18.1 89 234-322 54-144 (239)
53 KOG0971 Microtubule-associated 95.5 7.3 0.00016 46.2 34.0 88 284-372 493-599 (1243)
54 KOG0933 Structural maintenance 95.4 3.1 6.8E-05 49.5 22.9 22 451-472 991-1012(1174)
55 PF00261 Tropomyosin: Tropomyo 95.4 3.4 7.4E-05 41.4 22.4 64 248-311 171-234 (237)
56 PF15070 GOLGA2L5: Putative go 95.1 8 0.00017 44.4 24.8 42 273-314 201-242 (617)
57 PF09726 Macoilin: Transmembra 95.0 6.5 0.00014 45.7 24.0 60 95-161 420-479 (697)
58 COG4942 Membrane-bound metallo 95.0 6.9 0.00015 42.8 26.0 124 86-218 31-174 (420)
59 KOG0977 Nuclear envelope prote 94.9 8.8 0.00019 43.4 26.6 39 100-138 42-80 (546)
60 KOG4673 Transcription factor T 94.8 10 0.00022 43.8 27.3 26 351-376 602-627 (961)
61 KOG0977 Nuclear envelope prote 94.7 4.9 0.00011 45.3 21.3 48 267-314 296-343 (546)
62 KOG0962 DNA repair protein RAD 94.7 9.4 0.0002 46.9 24.8 193 176-383 797-993 (1294)
63 PF05667 DUF812: Protein of un 94.6 11 0.00023 43.2 27.2 46 90-135 318-363 (594)
64 PRK09039 hypothetical protein; 94.6 6.2 0.00013 41.9 20.9 49 92-140 45-93 (343)
65 KOG0018 Structural maintenance 94.4 16 0.00034 44.2 25.4 92 233-324 403-494 (1141)
66 COG4942 Membrane-bound metallo 94.2 10 0.00023 41.5 30.0 16 175-190 95-110 (420)
67 PF12252 SidE: Dot/Icm substra 94.1 12 0.00026 45.2 23.1 192 142-340 1124-1345(1439)
68 KOG4674 Uncharacterized conser 94.1 24 0.00052 45.0 30.2 66 91-156 50-115 (1822)
69 PF12325 TMF_TATA_bd: TATA ele 93.9 1.4 3E-05 40.3 12.4 47 297-345 70-120 (120)
70 TIGR00634 recN DNA repair prot 93.8 14 0.00031 41.5 24.6 72 255-326 303-377 (563)
71 COG4477 EzrA Negative regulato 93.7 15 0.00032 41.4 25.9 81 246-326 354-434 (570)
72 TIGR02680 conserved hypothetic 93.5 27 0.00057 43.7 26.8 35 89-123 745-779 (1353)
73 PF08317 Spc7: Spc7 kinetochor 93.2 4.1 8.9E-05 42.7 16.4 54 253-306 209-262 (325)
74 PF05701 WEMBL: Weak chloropla 92.8 19 0.00042 40.3 29.1 25 117-141 119-143 (522)
75 KOG0612 Rho-associated, coiled 92.8 31 0.00067 42.4 30.6 27 175-201 537-563 (1317)
76 PF06160 EzrA: Septation ring 92.7 21 0.00045 40.4 27.8 96 89-191 78-178 (560)
77 KOG0946 ER-Golgi vesicle-tethe 92.6 19 0.00041 42.5 21.4 93 71-163 611-720 (970)
78 PF07106 TBPIP: Tat binding pr 92.6 1.7 3.7E-05 41.2 11.4 62 241-302 74-137 (169)
79 KOG4674 Uncharacterized conser 92.5 41 0.00088 43.1 33.7 33 351-383 1489-1521(1822)
80 KOG0976 Rho/Rac1-interacting s 92.3 29 0.00063 41.0 27.1 38 182-219 215-253 (1265)
81 COG3883 Uncharacterized protei 92.3 16 0.00034 37.9 24.7 71 93-163 38-109 (265)
82 PF10146 zf-C4H2: Zinc finger- 92.3 4.3 9.4E-05 41.0 14.4 57 248-304 34-90 (230)
83 KOG4673 Transcription factor T 92.1 28 0.00061 40.4 26.3 106 174-293 402-514 (961)
84 PF00038 Filament: Intermediat 91.4 18 0.0004 37.0 32.9 70 90-159 58-134 (312)
85 KOG0962 DNA repair protein RAD 91.2 47 0.001 41.2 26.6 64 240-305 1016-1079(1294)
86 TIGR01843 type_I_hlyD type I s 90.9 23 0.00051 37.2 24.4 23 86-108 74-96 (423)
87 PF04849 HAP1_N: HAP1 N-termin 90.8 24 0.00053 37.2 26.2 86 237-322 218-303 (306)
88 PF09728 Taxilin: Myosin-like 90.8 24 0.00052 37.1 31.2 60 248-307 204-263 (309)
89 PF14197 Cep57_CLD_2: Centroso 90.2 4.6 0.0001 33.5 10.2 63 251-313 3-65 (69)
90 smart00787 Spc7 Spc7 kinetocho 89.9 10 0.00022 40.0 15.0 56 254-309 205-260 (312)
91 PF13166 AAA_13: AAA domain 89.3 46 0.00099 38.1 25.3 45 86-133 265-310 (712)
92 TIGR01000 bacteriocin_acc bact 89.2 38 0.00082 37.0 23.0 33 85-117 89-121 (457)
93 smart00787 Spc7 Spc7 kinetocho 89.1 9.4 0.0002 40.2 14.0 30 129-158 205-234 (312)
94 COG5185 HEC1 Protein involved 89.0 43 0.00094 37.4 25.2 128 89-216 333-505 (622)
95 PF08614 ATG16: Autophagy prot 88.9 3.5 7.6E-05 40.0 10.1 58 249-306 119-176 (194)
96 PF10234 Cluap1: Clusterin-ass 88.9 28 0.00062 36.1 17.0 82 238-319 168-249 (267)
97 COG4026 Uncharacterized protei 88.7 6.3 0.00014 39.9 11.6 88 251-349 133-220 (290)
98 PF09304 Cortex-I_coil: Cortex 88.6 11 0.00025 33.9 12.1 70 250-319 20-89 (107)
99 PF09789 DUF2353: Uncharacteri 88.5 37 0.00081 36.1 22.1 37 98-134 14-50 (319)
100 PF08614 ATG16: Autophagy prot 88.4 5.2 0.00011 38.9 10.9 6 341-346 178-183 (194)
101 COG3883 Uncharacterized protei 88.2 35 0.00076 35.4 19.9 65 95-159 33-97 (265)
102 PF12718 Tropomyosin_1: Tropom 88.1 23 0.0005 33.2 17.7 34 121-154 7-40 (143)
103 COG0419 SbcC ATPase involved i 88.0 66 0.0014 38.4 31.9 41 176-217 602-642 (908)
104 PF02403 Seryl_tRNA_N: Seryl-t 87.9 7 0.00015 34.1 10.4 71 237-307 27-100 (108)
105 KOG0971 Microtubule-associated 87.8 70 0.0015 38.5 22.5 24 8-31 152-175 (1243)
106 COG0419 SbcC ATPase involved i 87.6 70 0.0015 38.2 30.0 26 106-131 170-195 (908)
107 PF14662 CCDC155: Coiled-coil 87.2 33 0.00071 34.0 18.2 67 254-320 82-148 (193)
108 COG4372 Uncharacterized protei 87.1 51 0.0011 36.1 27.7 75 246-320 217-291 (499)
109 TIGR01005 eps_transp_fam exopo 86.8 68 0.0015 37.2 22.6 67 92-158 186-267 (754)
110 KOG0963 Transcription factor/C 86.8 66 0.0014 37.0 19.9 12 202-213 296-307 (629)
111 PF07106 TBPIP: Tat binding pr 86.7 12 0.00026 35.4 12.1 92 76-181 56-149 (169)
112 PF09730 BicD: Microtubule-ass 86.2 70 0.0015 37.6 19.8 64 250-313 395-458 (717)
113 PF12718 Tropomyosin_1: Tropom 85.9 30 0.00066 32.3 17.1 19 174-192 73-91 (143)
114 TIGR03007 pepcterm_ChnLen poly 85.9 59 0.0013 35.6 20.6 13 86-98 130-142 (498)
115 PF10168 Nup88: Nuclear pore c 85.9 80 0.0017 37.1 23.3 47 93-139 543-590 (717)
116 PF03962 Mnd1: Mnd1 family; I 85.9 14 0.00031 36.0 12.3 84 248-339 71-167 (188)
117 PF10146 zf-C4H2: Zinc finger- 85.9 21 0.00046 36.1 13.8 93 214-306 7-99 (230)
118 COG5185 HEC1 Protein involved 85.8 66 0.0014 36.1 25.2 37 279-315 485-521 (622)
119 KOG1962 B-cell receptor-associ 85.7 11 0.00023 37.9 11.5 62 246-307 151-212 (216)
120 PF11932 DUF3450: Protein of u 85.1 45 0.00097 33.6 16.2 91 243-333 53-148 (251)
121 PF10234 Cluap1: Clusterin-ass 85.1 17 0.00037 37.6 12.9 64 246-309 197-260 (267)
122 PF03999 MAP65_ASE1: Microtubu 85.1 0.27 5.8E-06 55.9 -0.1 68 246-313 228-304 (619)
123 PRK10884 SH3 domain-containing 85.0 11 0.00023 37.6 11.1 35 271-305 129-163 (206)
124 KOG0239 Kinesin (KAR3 subfamil 84.8 86 0.0019 36.6 20.4 19 120-138 134-152 (670)
125 KOG4302 Microtubule-associated 84.8 11 0.00023 43.6 12.4 45 175-219 33-82 (660)
126 PF12329 TMF_DNA_bd: TATA elem 84.6 11 0.00024 31.5 9.4 65 240-304 6-70 (74)
127 PF05622 HOOK: HOOK protein; 83.8 0.33 7.2E-06 55.9 0.0 59 248-306 365-423 (713)
128 PRK10929 putative mechanosensi 83.6 1.2E+02 0.0027 37.4 21.9 100 85-193 22-121 (1109)
129 PF13851 GAS: Growth-arrest sp 83.6 48 0.001 32.7 17.4 29 135-163 12-41 (201)
130 PRK11281 hypothetical protein; 83.6 1.2E+02 0.0027 37.4 21.6 29 172-200 119-147 (1113)
131 PF08317 Spc7: Spc7 kinetochor 83.5 63 0.0014 34.0 22.0 60 247-306 210-269 (325)
132 PF15619 Lebercilin: Ciliary p 83.2 49 0.0011 32.6 24.0 24 140-163 59-82 (194)
133 KOG0995 Centromere-associated 83.2 92 0.002 35.6 29.7 45 268-312 433-477 (581)
134 KOG0994 Extracellular matrix g 82.6 1.4E+02 0.003 37.2 28.6 22 88-109 1421-1442(1758)
135 PF02403 Seryl_tRNA_N: Seryl-t 82.3 12 0.00025 32.7 9.2 62 201-279 39-100 (108)
136 KOG0018 Structural maintenance 82.0 1.3E+02 0.0029 36.7 25.5 86 264-350 804-895 (1141)
137 PF04156 IncA: IncA protein; 82.0 35 0.00077 32.5 13.1 35 277-311 112-146 (191)
138 KOG1962 B-cell receptor-associ 81.9 12 0.00026 37.7 9.9 16 201-216 130-145 (216)
139 PRK10869 recombination and rep 81.8 99 0.0021 35.0 24.2 46 118-163 154-199 (553)
140 PF13949 ALIX_LYPXL_bnd: ALIX 81.8 63 0.0014 32.7 29.4 19 201-219 147-165 (296)
141 PF03962 Mnd1: Mnd1 family; I 81.4 17 0.00038 35.4 10.8 68 78-145 54-127 (188)
142 PF06005 DUF904: Protein of un 80.0 22 0.00048 29.7 9.5 37 268-304 33-69 (72)
143 PF10473 CENP-F_leu_zip: Leuci 79.3 57 0.0012 30.8 18.6 85 257-346 49-133 (140)
144 KOG0979 Structural maintenance 79.2 1.6E+02 0.0035 35.9 27.5 214 77-305 115-349 (1072)
145 PRK15422 septal ring assembly 79.1 16 0.00036 31.2 8.4 57 94-150 19-75 (79)
146 KOG0946 ER-Golgi vesicle-tethe 78.7 1.5E+02 0.0033 35.4 23.9 48 91-138 669-716 (970)
147 PF04111 APG6: Autophagy prote 78.4 34 0.00074 36.0 12.6 110 246-379 50-159 (314)
148 PF06005 DUF904: Protein of un 78.1 35 0.00077 28.6 10.1 47 251-297 23-69 (72)
149 PF06818 Fez1: Fez1; InterPro 78.1 39 0.00085 33.7 12.1 87 206-312 11-97 (202)
150 KOG0612 Rho-associated, coiled 78.0 1.9E+02 0.0041 36.0 29.5 31 125-155 498-528 (1317)
151 PF04111 APG6: Autophagy prote 77.9 42 0.00092 35.3 13.1 22 288-309 99-120 (314)
152 TIGR03007 pepcterm_ChnLen poly 77.2 1.2E+02 0.0026 33.3 25.3 7 207-213 256-262 (498)
153 PF04728 LPP: Lipoprotein leuc 77.2 22 0.00048 28.6 8.2 44 255-298 5-48 (56)
154 PF09789 DUF2353: Uncharacteri 77.0 1.1E+02 0.0023 32.7 20.7 15 329-343 273-287 (319)
155 PF04949 Transcrip_act: Transc 76.9 42 0.0009 32.1 11.3 61 243-303 81-141 (159)
156 COG4026 Uncharacterized protei 76.6 18 0.0004 36.7 9.4 64 246-309 142-205 (290)
157 KOG0978 E3 ubiquitin ligase in 76.6 1.6E+02 0.0035 34.5 22.1 276 39-338 123-407 (698)
158 PRK10884 SH3 domain-containing 75.9 20 0.00043 35.7 9.5 29 89-117 89-117 (206)
159 PF10481 CENP-F_N: Cenp-F N-te 75.8 1.1E+02 0.0024 32.1 16.9 18 202-219 15-32 (307)
160 PF04645 DUF603: Protein of un 75.8 19 0.00042 35.0 9.0 71 246-329 105-180 (181)
161 PF15397 DUF4618: Domain of un 75.5 1.1E+02 0.0023 31.8 17.4 54 248-301 83-147 (258)
162 PF14197 Cep57_CLD_2: Centroso 75.4 30 0.00065 28.7 8.9 59 248-306 7-65 (69)
163 COG2433 Uncharacterized conser 75.3 84 0.0018 36.2 15.0 80 241-331 438-520 (652)
164 KOG0804 Cytoplasmic Zn-finger 74.2 1.4E+02 0.003 33.4 15.8 96 248-355 363-458 (493)
165 TIGR00634 recN DNA repair prot 74.0 1.6E+02 0.0035 33.2 24.5 7 76-82 106-112 (563)
166 KOG4302 Microtubule-associated 73.5 1.9E+02 0.0041 33.8 27.4 39 125-163 100-138 (660)
167 PLN03229 acetyl-coenzyme A car 73.2 2E+02 0.0044 34.1 19.9 20 85-104 454-473 (762)
168 cd07653 F-BAR_CIP4-like The F- 73.1 1E+02 0.0022 30.6 16.9 13 204-216 71-83 (251)
169 KOG3647 Predicted coiled-coil 72.8 1.3E+02 0.0028 31.6 15.9 16 139-154 50-65 (338)
170 PF04949 Transcrip_act: Transc 72.2 94 0.002 29.8 12.8 21 252-272 83-103 (159)
171 KOG0980 Actin-binding protein 71.4 2.4E+02 0.0052 34.1 29.7 65 92-159 332-396 (980)
172 PF06818 Fez1: Fez1; InterPro 71.0 1.2E+02 0.0026 30.4 15.0 42 283-324 133-174 (202)
173 PF15619 Lebercilin: Ciliary p 70.9 1.1E+02 0.0024 30.1 20.5 38 275-312 119-156 (194)
174 PF01576 Myosin_tail_1: Myosin 70.9 1.4 2.9E-05 52.2 0.0 35 182-216 300-339 (859)
175 PF15450 DUF4631: Domain of un 70.8 1.9E+02 0.0042 32.8 23.8 19 174-192 358-376 (531)
176 PF15035 Rootletin: Ciliary ro 70.7 1.1E+02 0.0024 29.9 13.3 83 272-371 86-168 (182)
177 PRK10869 recombination and rep 70.6 1.9E+02 0.0042 32.7 24.1 39 329-367 342-380 (553)
178 TIGR02894 DNA_bind_RsfA transc 70.5 42 0.00092 32.4 9.9 15 201-215 57-71 (161)
179 PF09726 Macoilin: Transmembra 70.4 2.3E+02 0.0049 33.4 24.1 53 267-319 594-646 (697)
180 TIGR02338 gimC_beta prefoldin, 69.7 80 0.0017 27.9 11.7 31 183-213 19-49 (110)
181 PF07200 Mod_r: Modifier of ru 68.7 97 0.0021 28.5 14.7 11 352-362 134-144 (150)
182 PF13870 DUF4201: Domain of un 68.4 1.1E+02 0.0024 29.1 19.9 59 248-306 79-137 (177)
183 PF12795 MscS_porin: Mechanose 68.4 1.3E+02 0.0029 30.0 20.5 69 139-208 42-112 (240)
184 PF13514 AAA_27: AAA domain 68.4 2.9E+02 0.0063 33.9 29.2 11 376-386 1000-1010(1111)
185 KOG4603 TBP-1 interacting prot 68.3 1.2E+02 0.0026 29.9 12.4 7 342-348 162-168 (201)
186 TIGR01000 bacteriocin_acc bact 67.9 1.9E+02 0.0041 31.6 22.2 23 89-111 100-122 (457)
187 TIGR03017 EpsF chain length de 67.7 1.8E+02 0.0039 31.2 21.5 33 106-138 170-202 (444)
188 TIGR03545 conserved hypothetic 67.3 1.2E+02 0.0026 34.6 14.4 25 299-323 289-313 (555)
189 PF05531 NPV_P10: Nucleopolyhe 67.3 16 0.00035 31.0 5.7 16 266-281 41-56 (75)
190 PRK05431 seryl-tRNA synthetase 67.1 31 0.00066 37.8 9.4 68 240-307 29-99 (425)
191 COG3074 Uncharacterized protei 67.0 42 0.00092 28.3 7.9 52 95-146 20-71 (79)
192 PF07889 DUF1664: Protein of u 66.9 1E+02 0.0022 28.6 11.3 50 248-297 70-119 (126)
193 PF14942 Muted: Organelle biog 66.7 1.2E+02 0.0026 28.7 14.1 21 199-219 31-51 (145)
194 PF04728 LPP: Lipoprotein leuc 66.3 32 0.0007 27.7 6.9 45 248-292 5-49 (56)
195 PRK05431 seryl-tRNA synthetase 66.1 36 0.00077 37.3 9.6 17 247-263 43-59 (425)
196 PF10168 Nup88: Nuclear pore c 66.1 2.8E+02 0.006 32.8 18.6 40 177-216 610-650 (717)
197 PF06103 DUF948: Bacterial pro 65.8 64 0.0014 27.3 9.3 59 248-306 28-86 (90)
198 KOG0999 Microtubule-associated 64.9 2.7E+02 0.0058 32.2 29.0 75 89-163 4-78 (772)
199 TIGR02338 gimC_beta prefoldin, 64.6 21 0.00046 31.6 6.3 35 251-285 72-106 (110)
200 PF03904 DUF334: Domain of unk 64.5 1.7E+02 0.0037 29.8 14.1 16 206-221 44-59 (230)
201 PF11932 DUF3450: Protein of u 63.9 1.7E+02 0.0036 29.5 15.5 25 175-199 125-149 (251)
202 PF04912 Dynamitin: Dynamitin 63.8 2.1E+02 0.0047 30.7 21.8 43 173-215 208-256 (388)
203 PF03993 DUF349: Domain of Unk 63.6 77 0.0017 25.5 9.1 57 290-350 11-68 (77)
204 PLN02678 seryl-tRNA synthetase 63.5 38 0.00082 37.5 9.3 30 276-305 73-102 (448)
205 KOG0239 Kinesin (KAR3 subfamil 63.5 2.6E+02 0.0056 32.8 16.3 21 197-217 174-194 (670)
206 PF05531 NPV_P10: Nucleopolyhe 63.4 39 0.00084 28.7 7.2 47 258-304 9-58 (75)
207 COG3352 FlaC Putative archaeal 63.2 99 0.0022 29.7 10.6 50 237-286 56-105 (157)
208 PF11559 ADIP: Afadin- and alp 63.2 1.3E+02 0.0027 27.9 13.9 43 233-275 53-95 (151)
209 PF06008 Laminin_I: Laminin Do 62.7 1.8E+02 0.0039 29.4 25.3 70 89-158 41-110 (264)
210 PLN02678 seryl-tRNA synthetase 62.5 35 0.00076 37.8 8.8 23 197-219 38-61 (448)
211 cd00179 SynN Syntaxin N-termin 62.2 1.2E+02 0.0027 27.4 13.3 25 295-319 88-112 (151)
212 PF09787 Golgin_A5: Golgin sub 61.0 2.8E+02 0.0061 31.1 25.9 52 228-279 245-307 (511)
213 PF05377 FlaC_arch: Flagella a 60.7 32 0.00069 27.6 5.9 28 265-292 5-32 (55)
214 PF01576 Myosin_tail_1: Myosin 60.5 2.8 6.2E-05 49.6 0.0 68 240-307 181-248 (859)
215 PF13870 DUF4201: Domain of un 60.2 1.6E+02 0.0034 28.0 19.8 81 279-359 89-169 (177)
216 PLN02320 seryl-tRNA synthetase 59.8 50 0.0011 37.2 9.4 21 249-269 103-123 (502)
217 PRK03947 prefoldin subunit alp 59.7 1.4E+02 0.003 27.2 11.0 39 254-292 95-133 (140)
218 PRK15422 septal ring assembly 59.5 1.1E+02 0.0025 26.3 9.3 50 251-300 23-72 (79)
219 PRK10929 putative mechanosensi 59.3 4.4E+02 0.0095 32.8 28.0 20 174-193 144-163 (1109)
220 PF03148 Tektin: Tektin family 59.3 2.6E+02 0.0056 30.2 25.8 30 89-118 60-89 (384)
221 PLN03229 acetyl-coenzyme A car 59.2 3.7E+02 0.0081 32.0 24.1 21 86-106 429-449 (762)
222 KOG0976 Rho/Rac1-interacting s 59.1 3.9E+02 0.0085 32.2 27.1 68 87-154 93-160 (1265)
223 PF15290 Syntaphilin: Golgi-lo 58.6 1.3E+02 0.0028 31.7 11.4 50 146-216 86-135 (305)
224 PF09304 Cortex-I_coil: Cortex 58.1 1.5E+02 0.0032 27.0 12.6 41 252-292 36-76 (107)
225 PF06009 Laminin_II: Laminin D 58.0 3.3 7.2E-05 38.2 0.0 60 271-330 49-111 (138)
226 TIGR00414 serS seryl-tRNA synt 58.0 72 0.0016 34.9 10.2 67 240-306 31-101 (418)
227 KOG4643 Uncharacterized coiled 57.8 4.5E+02 0.0097 32.5 28.8 32 110-141 304-335 (1195)
228 PF05546 She9_MDM33: She9 / Md 57.5 1E+02 0.0022 31.0 10.1 18 353-370 132-149 (207)
229 TIGR00414 serS seryl-tRNA synt 56.9 61 0.0013 35.4 9.4 32 266-297 75-106 (418)
230 PRK09973 putative outer membra 56.5 1.1E+02 0.0024 26.6 9.0 45 254-298 25-69 (85)
231 PHA03395 p10 fibrous body prot 56.1 31 0.00068 30.1 5.6 13 248-260 20-32 (87)
232 PF05557 MAD: Mitotic checkpoi 55.8 1.4E+02 0.0031 34.8 12.6 17 247-263 567-583 (722)
233 PF12329 TMF_DNA_bd: TATA elem 55.1 1.1E+02 0.0023 25.7 8.5 46 248-293 21-66 (74)
234 PF04136 Sec34: Sec34-like fam 55.0 1.9E+02 0.0042 27.4 13.7 106 250-356 11-119 (157)
235 cd07665 BAR_SNX1 The Bin/Amphi 55.0 2.5E+02 0.0053 28.6 21.7 163 178-356 26-206 (234)
236 PRK11546 zraP zinc resistance 54.8 44 0.00096 31.6 6.8 43 265-307 66-108 (143)
237 COG2433 Uncharacterized conser 54.8 3.5E+02 0.0075 31.5 14.8 11 57-67 295-305 (652)
238 PF02183 HALZ: Homeobox associ 54.7 49 0.0011 25.3 5.8 35 268-302 6-40 (45)
239 PF07926 TPR_MLP1_2: TPR/MLP1/ 54.5 1.7E+02 0.0037 26.7 15.6 45 275-319 60-104 (132)
240 PRK10698 phage shock protein P 53.9 1.8E+02 0.0038 29.2 11.4 84 91-195 104-187 (222)
241 PF12711 Kinesin-relat_1: Kine 53.7 83 0.0018 27.4 7.8 36 180-215 2-41 (86)
242 KOG0995 Centromere-associated 53.0 4.1E+02 0.009 30.6 29.7 21 93-113 301-321 (581)
243 PF10498 IFT57: Intra-flagella 52.4 3.4E+02 0.0073 29.4 15.2 50 266-315 265-314 (359)
244 PF12729 4HB_MCP_1: Four helix 52.2 1.7E+02 0.0037 25.9 11.3 42 301-342 108-149 (181)
245 cd00632 Prefoldin_beta Prefold 52.2 58 0.0013 28.5 6.9 14 199-212 31-44 (105)
246 PF10805 DUF2730: Protein of u 51.7 1E+02 0.0023 27.3 8.4 61 245-305 34-96 (106)
247 cd00179 SynN Syntaxin N-termin 51.6 1.9E+02 0.0041 26.2 13.4 49 330-383 83-131 (151)
248 PF15233 SYCE1: Synaptonemal c 51.5 1.2E+02 0.0027 28.4 9.0 62 94-155 7-68 (134)
249 PF11559 ADIP: Afadin- and alp 51.1 2E+02 0.0044 26.5 13.0 45 251-295 78-122 (151)
250 PF05529 Bap31: B-cell recepto 51.0 1E+02 0.0023 29.6 9.1 37 275-311 155-191 (192)
251 PHA03011 hypothetical protein; 50.3 1.3E+02 0.0028 27.2 8.5 57 246-309 57-113 (120)
252 PHA01750 hypothetical protein 50.3 1E+02 0.0022 25.8 7.3 6 237-242 32-37 (75)
253 cd07651 F-BAR_PombeCdc15_like 49.6 2.7E+02 0.006 27.6 19.1 33 335-367 185-217 (236)
254 PF12958 DUF3847: Protein of u 49.3 1.8E+02 0.0039 25.4 9.3 28 331-358 58-85 (86)
255 cd08915 V_Alix_like Protein-in 49.3 3.4E+02 0.0073 28.5 27.5 30 280-309 290-319 (342)
256 PF07200 Mod_r: Modifier of ru 49.3 2.1E+02 0.0046 26.2 14.0 112 251-368 32-143 (150)
257 cd07665 BAR_SNX1 The Bin/Amphi 49.2 3E+02 0.0066 28.0 12.8 49 173-236 82-130 (234)
258 PF10392 COG5: Golgi transport 49.2 2.1E+02 0.0045 26.1 11.9 74 237-310 31-115 (132)
259 KOG4809 Rab6 GTPase-interactin 49.1 4.7E+02 0.01 30.2 24.9 22 248-269 340-361 (654)
260 PF06657 Cep57_MT_bd: Centroso 48.7 1.6E+02 0.0035 25.0 8.7 27 288-314 50-76 (79)
261 smart00030 CLb CLUSTERIN Beta 48.6 3E+02 0.0065 27.7 12.5 38 328-376 71-108 (206)
262 PRK10698 phage shock protein P 48.5 3E+02 0.0064 27.6 12.3 14 200-213 54-67 (222)
263 PRK15396 murein lipoprotein; P 48.3 1.2E+02 0.0025 26.0 7.7 45 255-299 27-71 (78)
264 PF15450 DUF4631: Domain of un 48.2 4.7E+02 0.01 29.9 26.3 13 171-183 305-317 (531)
265 PF14735 HAUS4: HAUS augmin-li 48.1 3.2E+02 0.007 27.9 13.6 39 174-219 147-185 (238)
266 PF05622 HOOK: HOOK protein; 47.9 6 0.00013 45.8 0.0 7 63-69 297-303 (713)
267 PF06705 SF-assemblin: SF-asse 47.9 3E+02 0.0066 27.6 24.1 16 179-194 39-54 (247)
268 PF09766 FimP: Fms-interacting 47.2 3E+02 0.0066 29.5 12.6 18 325-342 194-211 (355)
269 PF10498 IFT57: Intra-flagella 47.1 4E+02 0.0088 28.8 13.8 40 117-156 255-294 (359)
270 TIGR00020 prfB peptide chain r 47.0 3.7E+02 0.0081 29.2 13.2 62 149-219 7-70 (364)
271 PF07795 DUF1635: Protein of u 46.4 1.1E+02 0.0024 30.9 8.5 37 265-301 24-60 (214)
272 PF11629 Mst1_SARAH: C termina 46.2 74 0.0016 25.0 5.7 43 172-233 6-48 (49)
273 PF08172 CASP_C: CASP C termin 45.8 1E+02 0.0022 31.6 8.4 54 248-301 81-134 (248)
274 PTZ00446 vacuolar sorting prot 45.8 3.1E+02 0.0068 27.1 14.5 40 173-212 126-175 (191)
275 PF06632 XRCC4: DNA double-str 45.7 2.8E+02 0.0061 29.8 12.0 82 81-162 116-207 (342)
276 PF15290 Syntaphilin: Golgi-lo 45.5 2.5E+02 0.0055 29.6 11.1 23 141-163 116-138 (305)
277 TIGR02231 conserved hypothetic 45.2 2.1E+02 0.0045 32.0 11.4 9 350-358 203-211 (525)
278 KOG2264 Exostosin EXT1L [Signa 44.8 1.8E+02 0.0039 33.6 10.5 58 247-304 94-151 (907)
279 PF15070 GOLGA2L5: Putative go 44.7 5.6E+02 0.012 29.8 30.9 61 100-163 4-64 (617)
280 KOG0980 Actin-binding protein 44.7 6.6E+02 0.014 30.6 19.9 145 202-354 390-542 (980)
281 PF14915 CCDC144C: CCDC144C pr 44.5 4.2E+02 0.009 28.2 25.6 84 179-262 156-244 (305)
282 PF06156 DUF972: Protein of un 44.5 1.1E+02 0.0024 27.4 7.5 38 263-300 18-55 (107)
283 TIGR03752 conj_TIGR03752 integ 44.2 1.8E+02 0.0038 32.7 10.4 53 254-306 67-120 (472)
284 TIGR00020 prfB peptide chain r 44.0 3.8E+02 0.0083 29.1 12.7 54 292-346 53-106 (364)
285 TIGR01843 type_I_hlyD type I s 43.9 4E+02 0.0088 27.9 22.8 18 89-106 84-101 (423)
286 TIGR03545 conserved hypothetic 43.9 2.2E+02 0.0048 32.5 11.5 35 271-305 216-250 (555)
287 PF08826 DMPK_coil: DMPK coile 43.8 1.8E+02 0.0039 23.8 8.7 35 251-285 23-57 (61)
288 PF04012 PspA_IM30: PspA/IM30 42.6 2.7E+02 0.0058 27.2 10.6 98 89-187 101-202 (221)
289 TIGR02977 phageshock_pspA phag 42.4 3.5E+02 0.0076 26.8 13.1 21 174-194 166-186 (219)
290 PF07083 DUF1351: Protein of u 42.4 2.1E+02 0.0046 28.4 9.9 29 337-365 149-177 (215)
291 PHA03395 p10 fibrous body prot 42.0 1.3E+02 0.0028 26.4 7.1 22 258-279 9-30 (87)
292 PF02344 Myc-LZ: Myc leucine z 42.0 70 0.0015 23.0 4.5 21 198-218 1-21 (32)
293 TIGR02894 DNA_bind_RsfA transc 42.0 3.4E+02 0.0073 26.4 13.1 58 269-326 99-156 (161)
294 PF03961 DUF342: Protein of un 41.7 1.9E+02 0.004 31.8 10.3 25 251-275 332-356 (451)
295 PF05278 PEARLI-4: Arabidopsis 41.5 4.4E+02 0.0095 27.6 12.4 58 248-305 202-259 (269)
296 PF12777 MT: Microtubule-bindi 41.5 77 0.0017 33.5 7.1 26 91-116 20-45 (344)
297 PF05529 Bap31: B-cell recepto 41.5 1.6E+02 0.0034 28.3 8.7 33 250-282 158-190 (192)
298 PRK11546 zraP zinc resistance 41.5 1.6E+02 0.0035 27.9 8.4 48 115-162 62-109 (143)
299 KOG2751 Beclin-like protein [S 41.4 5.5E+02 0.012 28.7 18.8 93 175-304 177-269 (447)
300 TIGR03752 conj_TIGR03752 integ 41.2 2E+02 0.0042 32.4 10.1 23 278-300 113-135 (472)
301 PF15066 CAGE1: Cancer-associa 40.6 5.9E+02 0.013 28.8 20.9 71 202-285 433-503 (527)
302 PF06810 Phage_GP20: Phage min 40.6 3.3E+02 0.0071 25.9 10.4 12 371-383 113-124 (155)
303 KOG0972 Huntingtin interacting 40.5 3.8E+02 0.0083 28.6 11.5 129 99-248 226-358 (384)
304 TIGR02449 conserved hypothetic 40.4 2.1E+02 0.0046 23.7 8.7 47 90-136 4-50 (65)
305 PF13851 GAS: Growth-arrest sp 40.3 3.8E+02 0.0081 26.5 23.3 32 251-282 98-129 (201)
306 KOG0243 Kinesin-like protein [ 40.2 8.2E+02 0.018 30.3 28.6 72 306-377 718-789 (1041)
307 PLN02320 seryl-tRNA synthetase 40.0 1.3E+02 0.0028 34.1 8.7 13 204-216 92-104 (502)
308 PRK14127 cell division protein 39.9 1.6E+02 0.0036 26.6 7.8 45 72-116 8-53 (109)
309 KOG1937 Uncharacterized conser 39.8 6E+02 0.013 28.7 25.4 28 265-292 408-435 (521)
310 KOG0288 WD40 repeat protein Ti 39.8 5.7E+02 0.012 28.5 13.1 10 368-377 141-150 (459)
311 KOG3647 Predicted coiled-coil 39.8 4.8E+02 0.01 27.6 13.3 36 255-290 128-163 (338)
312 PF03961 DUF342: Protein of un 39.3 2.2E+02 0.0048 31.2 10.4 77 85-161 326-408 (451)
313 PHA03011 hypothetical protein; 39.2 2.5E+02 0.0054 25.4 8.6 29 237-265 62-90 (120)
314 PF11180 DUF2968: Protein of u 38.6 4.1E+02 0.009 26.5 11.5 19 179-197 173-191 (192)
315 cd07664 BAR_SNX2 The Bin/Amphi 38.4 4.4E+02 0.0095 26.7 21.7 155 177-345 25-197 (234)
316 COG5293 Predicted ATPase [Gene 38.3 6.4E+02 0.014 28.6 22.0 96 238-338 341-438 (591)
317 PF09738 DUF2051: Double stran 38.3 4.9E+02 0.011 27.5 12.2 100 89-199 80-179 (302)
318 TIGR01005 eps_transp_fam exopo 38.3 7E+02 0.015 29.1 25.7 63 79-141 155-221 (754)
319 TIGR02492 flgK_ends flagellar 37.9 2E+02 0.0043 30.1 9.4 59 248-309 143-205 (322)
320 cd07623 BAR_SNX1_2 The Bin/Amp 37.6 4.2E+02 0.0091 26.3 22.1 163 178-356 16-196 (224)
321 PRK00578 prfB peptide chain re 37.5 5.7E+02 0.012 27.8 12.8 54 294-348 55-108 (367)
322 PF06717 DUF1202: Protein of u 37.3 1.1E+02 0.0024 32.2 7.1 35 250-284 142-176 (308)
323 cd09235 V_Alix Middle V-domain 37.1 5.3E+02 0.011 27.3 27.0 19 201-219 194-212 (339)
324 cd09234 V_HD-PTP_like Protein- 37.0 5.3E+02 0.011 27.2 20.4 212 79-305 116-331 (337)
325 PF06419 COG6: Conserved oligo 37.0 4.8E+02 0.01 30.1 12.9 85 239-323 45-139 (618)
326 PTZ00464 SNF-7-like protein; P 36.4 4.5E+02 0.0098 26.3 12.0 28 89-116 21-48 (211)
327 PRK14160 heat shock protein Gr 36.2 2.3E+02 0.0049 28.6 8.9 48 277-324 57-104 (211)
328 PF06705 SF-assemblin: SF-asse 35.8 4.7E+02 0.01 26.3 24.8 48 249-296 178-226 (247)
329 smart00502 BBC B-Box C-termina 35.8 2.8E+02 0.006 23.7 12.7 88 249-339 3-90 (127)
330 cd00632 Prefoldin_beta Prefold 35.7 3E+02 0.0065 24.0 13.6 25 207-231 5-29 (105)
331 PRK13729 conjugal transfer pil 35.5 83 0.0018 35.2 6.3 44 261-304 77-120 (475)
332 KOG0288 WD40 repeat protein Ti 35.4 6.7E+02 0.015 28.0 14.1 83 285-372 87-172 (459)
333 PRK10636 putative ABC transpor 35.4 1.5E+02 0.0032 34.1 8.5 32 275-306 599-630 (638)
334 PF13600 DUF4140: N-terminal d 35.4 1.4E+02 0.0031 25.7 6.6 39 84-122 61-99 (104)
335 PRK05683 flgK flagellar hook-a 35.2 6.3E+02 0.014 29.7 13.5 79 233-314 128-209 (676)
336 PF15456 Uds1: Up-regulated Du 35.0 3.7E+02 0.0079 24.8 10.8 75 247-322 23-108 (124)
337 KOG3850 Predicted membrane pro 35.0 6.6E+02 0.014 27.8 13.7 26 95-120 262-287 (455)
338 PF04859 DUF641: Plant protein 34.8 1.5E+02 0.0033 27.7 7.0 79 201-292 48-126 (131)
339 PRK00578 prfB peptide chain re 34.7 6.3E+02 0.014 27.5 13.4 59 149-216 7-67 (367)
340 PF15188 CCDC-167: Coiled-coil 34.4 2.3E+02 0.0049 24.7 7.5 55 248-302 7-64 (85)
341 COG3937 Uncharacterized conser 34.4 2.9E+02 0.0062 25.2 8.3 33 175-207 18-51 (108)
342 PF10481 CENP-F_N: Cenp-F N-te 34.4 5.8E+02 0.013 27.0 17.6 54 206-272 75-128 (307)
343 PF06657 Cep57_MT_bd: Centroso 34.3 2E+02 0.0044 24.3 7.2 52 251-302 22-78 (79)
344 PF07851 TMPIT: TMPIT-like pro 34.3 2.9E+02 0.0063 29.7 9.9 47 116-162 13-59 (330)
345 PRK15396 murein lipoprotein; P 34.3 1.9E+02 0.0041 24.7 6.9 45 248-292 27-71 (78)
346 PF09738 DUF2051: Double stran 34.3 4.4E+02 0.0095 27.9 11.1 52 270-321 101-152 (302)
347 KOG2264 Exostosin EXT1L [Signa 34.0 1.9E+02 0.004 33.5 8.6 65 102-166 81-152 (907)
348 PRK05892 nucleoside diphosphat 33.9 2.3E+02 0.0051 26.9 8.3 17 179-195 59-75 (158)
349 PF05483 SCP-1: Synaptonemal c 33.8 8.8E+02 0.019 28.8 32.1 106 243-348 591-709 (786)
350 TIGR02231 conserved hypothetic 33.3 3.4E+02 0.0074 30.3 10.8 20 281-300 145-164 (525)
351 PF07862 Nif11: Nitrogen fixat 33.3 43 0.00094 25.3 2.7 44 338-381 3-46 (49)
352 PF15358 TSKS: Testis-specific 33.1 7.4E+02 0.016 27.7 13.5 105 84-197 102-218 (558)
353 PRK09973 putative outer membra 33.1 3.3E+02 0.0071 23.8 8.2 44 248-291 26-69 (85)
354 TIGR02449 conserved hypothetic 32.9 2.9E+02 0.0062 22.9 8.1 26 271-296 32-57 (65)
355 TIGR03017 EpsF chain length de 32.3 6.6E+02 0.014 27.0 21.5 11 87-97 141-151 (444)
356 PRK10361 DNA recombination pro 32.3 7.8E+02 0.017 27.8 20.9 12 372-383 233-244 (475)
357 PF05278 PEARLI-4: Arabidopsis 32.2 6.1E+02 0.013 26.6 15.6 20 3-22 10-29 (269)
358 PF10473 CENP-F_leu_zip: Leuci 32.0 4.4E+02 0.0096 24.9 16.8 49 248-296 54-102 (140)
359 smart00503 SynN Syntaxin N-ter 31.9 3.3E+02 0.0071 23.3 13.2 20 298-317 92-111 (117)
360 PF14282 FlxA: FlxA-like prote 31.9 3.1E+02 0.0067 24.3 8.3 52 92-143 18-73 (106)
361 PF06717 DUF1202: Protein of u 31.9 1.6E+02 0.0035 31.0 7.3 14 348-361 207-220 (308)
362 PRK02195 V-type ATP synthase s 31.6 3.2E+02 0.0068 27.0 9.1 39 276-314 26-64 (201)
363 PRK13729 conjugal transfer pil 31.6 1.9E+02 0.0042 32.4 8.3 45 262-306 71-115 (475)
364 PF05082 Rop-like: Rop-like; 31.5 1.6E+02 0.0034 24.6 5.8 59 248-306 4-62 (66)
365 PF13874 Nup54: Nucleoporin co 31.5 3.3E+02 0.0071 25.2 8.7 69 65-138 14-82 (141)
366 cd07686 F-BAR_Fer The F-BAR (F 31.5 5.8E+02 0.013 26.0 18.4 135 202-348 69-222 (234)
367 PF14662 CCDC155: Coiled-coil 31.4 5.4E+02 0.012 25.7 25.5 26 92-117 7-32 (193)
368 PF03670 UPF0184: Uncharacteri 30.7 2.7E+02 0.0059 24.2 7.3 42 103-144 29-70 (83)
369 PF03915 AIP3: Actin interacti 30.7 7.9E+02 0.017 27.3 12.9 25 251-275 211-235 (424)
370 PF04912 Dynamitin: Dynamitin 30.5 7.1E+02 0.015 26.8 13.7 71 249-319 301-374 (388)
371 TIGR01069 mutS2 MutS2 family p 30.5 8.2E+02 0.018 29.1 13.7 19 361-379 734-752 (771)
372 PF07426 Dynactin_p22: Dynacti 30.4 5.1E+02 0.011 25.1 16.7 44 275-318 120-163 (174)
373 COG0172 SerS Seryl-tRNA synthe 30.4 2.5E+02 0.0054 31.2 8.8 67 240-306 30-100 (429)
374 KOG0244 Kinesin-like protein [ 30.0 1.1E+03 0.024 28.8 14.8 52 91-144 335-386 (913)
375 PRK14158 heat shock protein Gr 30.0 4.2E+02 0.0091 26.3 9.6 25 38-63 5-29 (194)
376 PRK04406 hypothetical protein; 29.8 3.4E+02 0.0074 22.8 8.7 25 276-300 27-51 (75)
377 PF08826 DMPK_coil: DMPK coile 29.4 3.2E+02 0.0069 22.3 9.4 43 112-154 16-58 (61)
378 PRK02119 hypothetical protein; 29.2 3.4E+02 0.0074 22.7 8.4 11 290-300 39-49 (73)
379 PF03670 UPF0184: Uncharacteri 29.1 3.4E+02 0.0075 23.6 7.7 34 271-304 37-70 (83)
380 PF10224 DUF2205: Predicted co 29.0 3.5E+02 0.0075 23.3 7.7 12 271-282 41-52 (80)
381 PF04782 DUF632: Protein of un 28.9 7.3E+02 0.016 26.4 20.7 154 197-371 91-255 (312)
382 PF12761 End3: Actin cytoskele 28.9 6E+02 0.013 25.4 10.9 20 199-218 97-116 (195)
383 PF13514 AAA_27: AAA domain 28.8 1.2E+03 0.026 28.8 32.3 8 353-360 972-979 (1111)
384 PF14712 Snapin_Pallidin: Snap 28.7 3.5E+02 0.0077 22.7 10.5 17 293-309 62-78 (92)
385 PRK08871 flgK flagellar hook-a 28.6 2.2E+02 0.0047 33.0 8.4 10 54-63 25-34 (626)
386 PF05103 DivIVA: DivIVA protei 28.5 39 0.00085 30.1 2.0 18 341-358 113-130 (131)
387 TIGR01554 major_cap_HK97 phage 27.9 3.3E+02 0.0072 28.9 9.2 14 252-265 5-18 (378)
388 PF15294 Leu_zip: Leucine zipp 27.8 7.4E+02 0.016 26.1 15.4 44 203-246 130-174 (278)
389 PRK10803 tol-pal system protei 27.8 3.1E+02 0.0067 28.1 8.6 31 269-299 70-100 (263)
390 PHA03332 membrane glycoprotein 27.8 1.3E+03 0.028 29.0 14.4 10 486-495 1226-1235(1328)
391 PF04420 CHD5: CHD5-like prote 27.7 1.4E+02 0.0031 28.3 5.7 10 252-261 46-55 (161)
392 PF09766 FimP: Fms-interacting 27.7 4.4E+02 0.0095 28.3 10.0 69 87-159 85-153 (355)
393 PF10267 Tmemb_cc2: Predicted 27.4 8.7E+02 0.019 26.8 15.7 186 10-195 131-328 (395)
394 KOG4191 Histone acetyltransfer 27.2 2.8E+02 0.0062 31.1 8.5 58 248-305 403-470 (516)
395 TIGR01010 BexC_CtrB_KpsE polys 27.1 7.5E+02 0.016 26.0 12.3 118 180-303 188-307 (362)
396 PF05010 TACC: Transforming ac 27.0 6.5E+02 0.014 25.2 23.7 45 253-297 161-205 (207)
397 PF14282 FlxA: FlxA-like prote 26.7 4.3E+02 0.0094 23.4 8.3 20 248-267 21-40 (106)
398 PF05008 V-SNARE: Vesicle tran 26.7 3.2E+02 0.0069 22.2 7.0 53 89-141 21-74 (79)
399 PF05600 DUF773: Protein of un 26.6 7.9E+02 0.017 27.8 12.2 52 79-130 117-168 (507)
400 PF12777 MT: Microtubule-bindi 26.5 7.9E+02 0.017 26.0 13.5 43 304-346 77-124 (344)
401 KOG0999 Microtubule-associated 26.4 1.1E+03 0.023 27.5 24.7 26 473-498 357-382 (772)
402 PF14257 DUF4349: Domain of un 26.3 1.4E+02 0.0029 30.2 5.7 61 126-197 137-199 (262)
403 COG4372 Uncharacterized protei 26.3 9.4E+02 0.02 26.8 29.1 24 120-143 101-124 (499)
404 PRK09239 chorismate mutase; Pr 26.2 4.7E+02 0.01 23.2 9.6 36 269-304 12-47 (104)
405 PF05546 She9_MDM33: She9 / Md 26.1 6.9E+02 0.015 25.2 12.8 38 252-289 45-82 (207)
406 COG5420 Uncharacterized conser 26.1 3.7E+02 0.0079 22.5 6.9 59 248-306 8-66 (71)
407 PF05384 DegS: Sensor protein 25.7 6.1E+02 0.013 24.4 17.2 34 294-327 97-130 (159)
408 PF09730 BicD: Microtubule-ass 25.6 1.2E+03 0.026 27.8 30.4 24 339-362 457-482 (717)
409 TIGR01554 major_cap_HK97 phage 25.6 2.8E+02 0.0061 29.4 8.2 14 277-290 37-50 (378)
410 PF05010 TACC: Transforming ac 25.6 6.9E+02 0.015 25.0 22.0 32 246-277 69-100 (207)
411 PF04102 SlyX: SlyX; InterPro 25.4 3.8E+02 0.0082 21.9 7.4 35 266-300 17-51 (69)
412 PF02050 FliJ: Flagellar FliJ 25.2 4.1E+02 0.0088 22.2 10.9 76 247-322 6-86 (123)
413 COG0172 SerS Seryl-tRNA synthe 25.1 3.1E+02 0.0066 30.5 8.4 26 105-130 34-59 (429)
414 PRK14161 heat shock protein Gr 25.1 3.1E+02 0.0066 26.8 7.6 25 299-323 37-61 (178)
415 PF10191 COG7: Golgi complex c 25.0 1.2E+03 0.026 27.7 17.5 159 202-369 67-234 (766)
416 PF10211 Ax_dynein_light: Axon 24.9 6.6E+02 0.014 24.5 12.5 95 201-300 94-189 (189)
417 PRK08147 flgK flagellar hook-a 24.7 1E+03 0.022 26.8 13.9 78 234-314 130-212 (547)
418 PRK02119 hypothetical protein; 24.7 4.2E+02 0.009 22.1 8.4 46 255-300 11-56 (73)
419 PF04201 TPD52: Tumour protein 24.7 3.5E+02 0.0077 26.3 7.7 18 89-106 32-49 (162)
420 PF03993 DUF349: Domain of Unk 24.5 3.7E+02 0.008 21.5 8.7 33 119-156 32-64 (77)
421 PRK11020 hypothetical protein; 24.4 3.8E+02 0.0083 24.7 7.4 22 270-291 34-55 (118)
422 TIGR01069 mutS2 MutS2 family p 24.3 1.3E+03 0.027 27.6 15.0 13 89-101 377-389 (771)
423 PF06810 Phage_GP20: Phage min 24.2 6.2E+02 0.013 24.0 13.6 17 366-382 101-117 (155)
424 PHA02414 hypothetical protein 24.2 5.3E+02 0.012 23.2 8.5 21 176-196 6-26 (111)
425 PF09177 Syntaxin-6_N: Syntaxi 24.1 4.6E+02 0.01 22.5 9.1 20 89-108 8-27 (97)
426 PF13747 DUF4164: Domain of un 24.1 4.7E+02 0.01 22.6 11.1 46 252-297 38-83 (89)
427 KOG4643 Uncharacterized coiled 23.7 1.5E+03 0.032 28.3 28.5 44 250-293 478-521 (1195)
428 PF05791 Bacillus_HBL: Bacillu 23.7 3E+02 0.0066 26.6 7.3 29 279-307 147-175 (184)
429 PHA03386 P10 fibrous body prot 23.2 4.4E+02 0.0095 23.5 7.3 14 294-307 35-48 (94)
430 PRK00373 V-type ATP synthase s 23.1 5.7E+02 0.012 25.1 9.2 32 277-308 28-59 (204)
431 COG4913 Uncharacterized protei 23.1 6.9E+02 0.015 30.1 10.8 100 248-349 618-726 (1104)
432 PF08172 CASP_C: CASP C termin 22.9 8.4E+02 0.018 25.0 11.1 27 284-310 82-108 (248)
433 PF10205 KLRAQ: Predicted coil 22.7 5.7E+02 0.012 23.0 9.0 54 252-305 18-71 (102)
434 PF10147 CR6_interact: Growth 22.6 3.3E+02 0.0071 27.6 7.4 8 37-44 64-71 (217)
435 PRK10636 putative ABC transpor 22.5 5.5E+02 0.012 29.5 10.2 59 260-318 563-628 (638)
436 KOG4005 Transcription factor X 22.4 8.9E+02 0.019 25.2 12.0 68 252-319 89-157 (292)
437 PF05557 MAD: Mitotic checkpoi 22.2 1E+02 0.0022 36.0 4.3 46 330-378 608-657 (722)
438 PF08946 Osmo_CC: Osmosensory 22.1 2E+02 0.0044 22.3 4.4 25 89-113 15-39 (46)
439 PRK06665 flgK flagellar hook-a 22.1 4.3E+02 0.0094 30.5 9.3 22 327-348 279-300 (627)
440 KOG0804 Cytoplasmic Zn-finger 22.1 1.2E+03 0.025 26.4 15.2 71 248-318 370-440 (493)
441 PF08647 BRE1: BRE1 E3 ubiquit 22.0 5.3E+02 0.011 22.4 13.5 72 252-323 9-80 (96)
442 PRK11020 hypothetical protein; 21.9 5.2E+02 0.011 23.8 7.8 21 286-306 36-56 (118)
443 PRK07857 hypothetical protein; 21.8 4.3E+02 0.0094 23.9 7.3 32 89-120 31-62 (106)
444 PRK04406 hypothetical protein; 21.6 4.9E+02 0.011 21.9 8.4 46 255-300 13-58 (75)
445 cd00890 Prefoldin Prefoldin is 21.4 2.6E+02 0.0056 24.6 5.9 40 248-287 89-128 (129)
446 TIGR01807 CM_P2 chorismate mut 21.4 2.5E+02 0.0055 23.0 5.4 30 90-119 3-32 (76)
447 PF06698 DUF1192: Protein of u 21.3 90 0.002 25.4 2.6 19 171-189 18-36 (59)
448 PF15397 DUF4618: Domain of un 21.2 9.4E+02 0.02 25.0 21.2 32 182-219 121-152 (258)
449 cd07666 BAR_SNX7 The Bin/Amphi 21.2 9E+02 0.02 24.8 19.3 44 263-306 131-174 (243)
450 PF04102 SlyX: SlyX; InterPro 21.2 4.6E+02 0.01 21.4 7.4 46 261-306 5-50 (69)
451 PF10368 YkyA: Putative cell-w 21.1 8.2E+02 0.018 24.2 18.0 33 262-294 166-198 (204)
452 PF06428 Sec2p: GDP/GTP exchan 20.8 1.8E+02 0.0039 25.9 4.7 71 90-160 12-83 (100)
453 TIGR01541 tape_meas_lam_C phag 20.8 1E+03 0.023 25.4 15.7 27 279-305 81-107 (332)
454 COG3352 FlaC Putative archaeal 20.7 7.8E+02 0.017 23.8 9.9 55 248-302 74-129 (157)
455 COG1256 FlgK Flagellar hook-as 20.6 7.4E+02 0.016 28.4 10.5 42 270-311 166-210 (552)
456 KOG4571 Activating transcripti 20.4 1E+03 0.023 25.2 11.8 45 117-161 244-288 (294)
457 TIGR01801 CM_A chorismate muta 20.4 2.6E+02 0.0057 24.7 5.6 32 89-120 7-38 (102)
458 PF15066 CAGE1: Cancer-associa 20.1 1.3E+03 0.028 26.2 20.4 113 186-304 343-455 (527)
459 PF04977 DivIC: Septum formati 20.1 2.5E+02 0.0054 22.5 5.1 41 248-288 19-59 (80)
460 PF03194 LUC7: LUC7 N_terminus 20.1 7.9E+02 0.017 25.2 9.8 44 294-348 122-165 (254)
No 1
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=99.57 E-value=1.7e-11 Score=124.64 Aligned_cols=220 Identities=21% Similarity=0.312 Sum_probs=175.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHH---------
Q 009998 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALG--------- 159 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~--------- 159 (520)
+.+..++..+...+..+++.|+.++..+...+++|++|..+.+.++++-+.+++.+++.++++..++....
T Consensus 9 ~E~e~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL 88 (294)
T COG1340 9 DELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQEL 88 (294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888999999999999999999999999999999999999888888888887777777754332
Q ss_pred -----hhhhhhccccCCCCCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 009998 160 -----KLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKK 234 (520)
Q Consensus 160 -----klre~~nArsk~~f~SveEID~rI~~LE~~IqhgSLsL~EEKklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~k 234 (520)
.++...+-.. +...|+..|...|.+|+|.++|.+||+.+|+++|+.|+.|++....+.... .
T Consensus 89 ~~~~~~l~e~~~~~~-~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~----------e-- 155 (294)
T COG1340 89 RKEYRELKEKRNEFN-LGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKAL----------E-- 155 (294)
T ss_pred HHHHHHHHHHhhhhh-ccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH----------H--
Confidence 2222222111 457899999999999999999999999999999999999999887644311 1
Q ss_pred hhhHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 009998 235 EDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQY 314 (520)
Q Consensus 235 e~~~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~ 314 (520)
..+.++.+.+++++++++...++.+|.++..+...+..++..+..+.|.+....|++...+-.++...++.+..|-+.
T Consensus 156 --~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~ 233 (294)
T COG1340 156 --ENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNL 233 (294)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 223555666778888999999999999998888888888888888888888888888888888888888777777776
Q ss_pred HHHHHHHHH
Q 009998 315 RALLNEAKA 323 (520)
Q Consensus 315 r~~~~kare 323 (520)
...++....
T Consensus 234 ~~elre~~k 242 (294)
T COG1340 234 QNELRELEK 242 (294)
T ss_pred HHHHHHHHH
Confidence 666665543
No 2
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.89 E-value=5.6e-06 Score=84.88 Aligned_cols=208 Identities=20% Similarity=0.300 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHH-------HHHHhhhhhhccccCCCCCCHHHHHHH
Q 009998 110 MQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLH-------QALGKLRTTNNARSGGICSSEEELDDL 182 (520)
Q Consensus 110 ~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq-------~~L~klre~~nArsk~~f~SveEID~r 182 (520)
..+...+......|.+|+.++.+++++..+++....+.+++.+.|. +.++.+++. |. ..+..+.++-..
T Consensus 16 ~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~k---R~-ein~kl~eL~~~ 91 (294)
T COG1340 16 KQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEK---RD-EINAKLQELRKE 91 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHH
Confidence 3444555566677788888888887777776666555555555554 334444432 11 113333334444
Q ss_pred HHHHHHHHh---cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhccc------hhhHHH
Q 009998 183 IRSLQYRIQ---HEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSD------LDGVKK 253 (520)
Q Consensus 183 I~~LE~~Iq---hgSLsL~EEKklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~~~d~iK~l~~e------Ld~lKk 253 (520)
+..|=.... .|-.++. .+=++|..|...-.+-.- +...-..+...|+.+..+ ......
T Consensus 92 ~~~l~e~~~~~~~~~~~~~---~ler~i~~Le~~~~T~~L----------~~e~E~~lvq~I~~L~k~le~~~k~~e~~~ 158 (294)
T COG1340 92 YRELKEKRNEFNLGGRSIK---SLEREIERLEKKQQTSVL----------TPEEERELVQKIKELRKELEDAKKALEENE 158 (294)
T ss_pred HHHHHHHhhhhhccCCCHH---HHHHHHHHHHHHHHhcCC----------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433333333 2223332 333444444433221000 000000111122222222 223445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc--cCHH
Q 009998 254 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVK--KDVQ 331 (520)
Q Consensus 254 eldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~karela~~--~~v~ 331 (520)
++..+.+++..+.++...+..+|..|..+.++++.+.-++|..++.+|+..|+.+..|-+++..+....+-... ++..
T Consensus 159 ~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elr 238 (294)
T COG1340 159 KLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELR 238 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 56666677777777777888888888888899999999999999999999999999999888877776654333 3444
Q ss_pred HHH
Q 009998 332 GLK 334 (520)
Q Consensus 332 el~ 334 (520)
++.
T Consensus 239 e~~ 241 (294)
T COG1340 239 ELE 241 (294)
T ss_pred HHH
Confidence 443
No 3
>PRK03918 chromosome segregation protein; Provisional
Probab=98.10 E-value=0.0069 Score=70.14 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 90 KIRAKIDLTDREIQRRNQARMQLMDELRAK 119 (520)
Q Consensus 90 ~lkakI~~a~keI~kl~q~R~~I~akl~~~ 119 (520)
.+..+|..++.++..++.....+...+...
T Consensus 456 ~~~~ei~~l~~~~~~l~~~~~~l~~~~~~~ 485 (880)
T PRK03918 456 EYTAELKRIEKELKEIEEKERKLRKELREL 485 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666555555555443
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.89 E-value=0.017 Score=68.18 Aligned_cols=42 Identities=12% Similarity=0.214 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 90 KIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLR 131 (520)
Q Consensus 90 ~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLk 131 (520)
.+...|..+..++..+......+...+..+......+...+.
T Consensus 678 ~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~ 719 (1164)
T TIGR02169 678 RLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIG 719 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555444444444444444433333333333
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.89 E-value=0.017 Score=68.21 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 009998 92 RAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYK 141 (520)
Q Consensus 92 kakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r 141 (520)
...|..+..++..+......+...+.........+..++..+......+.
T Consensus 673 ~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~ 722 (1164)
T TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIE 722 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555554444333
No 6
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.86 E-value=0.019 Score=71.79 Aligned_cols=250 Identities=18% Similarity=0.257 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHhhhhhhccccCCCCCC
Q 009998 96 DLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICSS 175 (520)
Q Consensus 96 ~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~klre~~nArsk~~f~S 175 (520)
..++.+|..+.......-..+.....+...+..+++.|..+..++...+....++-+.|.+.++.+.+.-.... .-
T Consensus 932 ~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~e----ek 1007 (1930)
T KOG0161|consen 932 RKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEE----EK 1007 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 33334444444444444444444555556666666666666666555554444444445444443332111000 01
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhccchhhHHHHH
Q 009998 176 EEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKES 255 (520)
Q Consensus 176 veEID~rI~~LE~~IqhgSLsL~EEKklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~~~d~iK~l~~eLd~lKkel 255 (520)
+..+...+..||-.++---..|..|++...+.. +..|+..+.+...+..+...-.++..+..+++.+..++..+..++
T Consensus 1008 ~~~l~k~~~kle~~l~~le~~le~e~~~r~e~E--k~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~ 1085 (1930)
T KOG0161|consen 1008 AKSLNKAKAKLEQQLDDLEVTLEREKRIRMELE--KAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKL 1085 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 234666778888888888888999999999888 333443444444455555555566666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------hHHHHHH
Q 009998 256 QAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG---------------------NAYFFQY 314 (520)
Q Consensus 256 dalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~---------------------n~~f~~~ 314 (520)
+....-+..+...++.+...|..|.+++.+-...|.++-..+.+|..++.+. ..+|+..
T Consensus 1086 e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l 1165 (1930)
T KOG0161|consen 1086 EDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKL 1165 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 6666655555555555555555555555555555555444444444433332 2245555
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhCCh
Q 009998 315 RALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNK 352 (520)
Q Consensus 315 r~~~~karela~~~~v~el~~~~~~eve~fm~~wn~~~ 352 (520)
++.+... .+.....+.+++..|...|...-+..-+..
T Consensus 1166 ~~~leee-~~~~e~~~~~lr~~~~~~~~el~~qle~l~ 1202 (1930)
T KOG0161|consen 1166 RRDLEEE-TLDHEAQIEELRKKHADSLAELQEQLEQLQ 1202 (1930)
T ss_pred HHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555442 222335566677777777776666554433
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.84 E-value=0.038 Score=65.07 Aligned_cols=67 Identities=19% Similarity=0.258 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHH
Q 009998 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLH 155 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq 155 (520)
..+..+++.++.++..+......+...+.........+..++..+......+...+......+..++
T Consensus 673 ~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1179)
T TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE 739 (1179)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666665555555555555555555555554444444333333333333333333
No 8
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.83 E-value=0.02 Score=62.88 Aligned_cols=75 Identities=23% Similarity=0.209 Sum_probs=46.6
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 009998 239 DQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQ 313 (520)
Q Consensus 239 d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~ 313 (520)
.++..+...+.+++..+...+..|..+......++.++..|......+......+..++..|..++.+.....+.
T Consensus 330 ~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 330 DEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYH 404 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445566666666666666666666666666666666666666666666666676676666666554443
No 9
>PRK11637 AmiB activator; Provisional
Probab=97.80 E-value=0.025 Score=61.01 Aligned_cols=67 Identities=9% Similarity=0.150 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHH
Q 009998 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLH 155 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq 155 (520)
..++.+|++++.+|+.+.+....+...+.....+...+..+|..+..+.......+...-.+|..++
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~ 109 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELN 109 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666665555555555544444444444444444444443333333333333333
No 10
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.76 E-value=0.019 Score=64.22 Aligned_cols=69 Identities=26% Similarity=0.392 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCHHHHHH
Q 009998 267 GKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKE 335 (520)
Q Consensus 267 ~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~karela~~~~v~el~~ 335 (520)
..+..+.+.+..+.++++.+...+.+..+.+..||+.-.+....+-.++..+...+.+..+.++.+|.+
T Consensus 376 ~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~ 444 (569)
T PRK04778 376 IAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPE 444 (569)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcH
Confidence 334555667777778888888888888888888888777776767777777776666655555544433
No 11
>PRK02224 chromosome segregation protein; Provisional
Probab=97.75 E-value=0.055 Score=63.05 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLK 134 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr 134 (520)
..+...++.+...+..+...+..+...+.........+..++..+.
T Consensus 345 e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~ 390 (880)
T PRK02224 345 ESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELE 390 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666655555444444444333333333333333
No 12
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.74 E-value=0.066 Score=64.79 Aligned_cols=55 Identities=16% Similarity=0.274 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 009998 91 IRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMD 145 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~ 145 (520)
+..+|+.++..+..+......+...+..+...+.++..++..+.-+...++..+.
T Consensus 672 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1163)
T COG1196 672 LEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELA 726 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666665555555555555555555555555555555555554444444433
No 13
>PRK02224 chromosome segregation protein; Provisional
Probab=97.72 E-value=0.14 Score=59.74 Aligned_cols=78 Identities=21% Similarity=0.285 Sum_probs=39.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 009998 246 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEV-------NDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALL 318 (520)
Q Consensus 246 ~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel-------~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~ 318 (520)
..++.+.+++..+...+..+...+..+.+++..+...+ +.+....+.+-..+..|+..+.......-.++..+
T Consensus 363 ~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l 442 (880)
T PRK02224 363 EEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERV 442 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443333 33334445555556666666555555555566666
Q ss_pred HHHHH
Q 009998 319 NEAKA 323 (520)
Q Consensus 319 ~kare 323 (520)
..++.
T Consensus 443 ~~~~~ 447 (880)
T PRK02224 443 EEAEA 447 (880)
T ss_pred HHHHH
Confidence 66654
No 14
>PRK03918 chromosome segregation protein; Provisional
Probab=97.71 E-value=0.17 Score=58.89 Aligned_cols=37 Identities=14% Similarity=0.147 Sum_probs=19.6
Q ss_pred chHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 88 DPKIRAKI-DLTDREIQRRNQARMQLMDELRAKRVIRG 124 (520)
Q Consensus 88 d~~lkakI-~~a~keI~kl~q~R~~I~akl~~~r~~R~ 124 (520)
++.++..| +....+|..+...-..+..++..+..+..
T Consensus 446 ~~~~~~el~~~~~~ei~~l~~~~~~l~~~~~~l~~~~~ 483 (880)
T PRK03918 446 TEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELR 483 (880)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 66666666666555555555554444443
No 15
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.71 E-value=0.047 Score=65.97 Aligned_cols=51 Identities=22% Similarity=0.299 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 009998 274 EEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAM 324 (520)
Q Consensus 274 ~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~karel 324 (520)
.++..++.++..+......+-+.+..++..+.+....|...+..+..+...
T Consensus 432 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1163)
T COG1196 432 AELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKE 482 (1163)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444555555555555555555554444443
No 16
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.68 E-value=0.098 Score=61.64 Aligned_cols=51 Identities=20% Similarity=0.211 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009998 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQ 139 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~ 139 (520)
..+...++.++..+..+......+...+...+.....+..++..+......
T Consensus 680 ~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 730 (1179)
T TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISA 730 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554444444444444444444444444333333333
No 17
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.57 E-value=0.059 Score=65.94 Aligned_cols=143 Identities=10% Similarity=0.161 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCC---cH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhccch
Q 009998 173 CSSEEELDDLIRSLQYRIQHEIIP---LS-EEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDL 248 (520)
Q Consensus 173 f~SveEID~rI~~LE~~IqhgSLs---L~-EEKklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~~~d~iK~l~~eL 248 (520)
..|+++|...|..++..+..-.-. +. +-.++-.+|+.|+.....+. +.+.++...+..+..+..+ |
T Consensus 821 ~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~---~~klkl~~~l~~r~~le~~-------L 890 (1311)
T TIGR00606 821 DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELK---SEKLQIGTNLQRRQQFEEQ-------L 890 (1311)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-------H
Confidence 458899999999888887764222 22 22344456666655443333 3444455544444444444 4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Q 009998 249 DGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKK 328 (520)
Q Consensus 249 d~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~karela~~~ 328 (520)
+++..++..++..|..+...+..+..++..++.+++.+....+..+ ..++.+++.....+.+.......+.++...|
T Consensus 891 ~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~ 967 (1311)
T TIGR00606 891 VELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSN---KKAQDKVNDIKEKVKNIHGYMKDIENKIQDG 967 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4455555555555555555555555555555555555444444333 3333333333334444444444444444443
No 18
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.56 E-value=0.16 Score=56.86 Aligned_cols=185 Identities=21% Similarity=0.296 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHhhhhhhccccC
Q 009998 91 IRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSG 170 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~klre~~nArsk 170 (520)
+..++...+++...|.+....+......++.+-..|..+|...+.+...+.....+.......|......|..
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~------- 213 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKE------- 213 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 5566666666666666666666666655666666666666555555555544444444333333333333322
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhccchhh
Q 009998 171 GICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDG 250 (520)
Q Consensus 171 ~~f~SveEID~rI~~LE~~IqhgSLsL~EEKklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~~~d~iK~l~~eLd~ 250 (520)
.-++...+|..|+..|.+=+=...|--+++..++.+...++.... ..+..++....+.+....+.. .
T Consensus 214 ----q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~--eLk~rLk~~~~~~~~~~~~~~-------~ 280 (546)
T PF07888_consen 214 ----QLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEA--ELKQRLKETVVQLKQEETQAQ-------Q 280 (546)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhh-------h
Confidence 124556677777777765554555555666666655544443221 111233333222222111111 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFA 295 (520)
Q Consensus 251 lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~ 295 (520)
+..+.+.++.+|-.+.+.+.+...+..-|..++.++...||....
T Consensus 281 ~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~a 325 (546)
T PF07888_consen 281 LQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMA 325 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444445555555555555555555544433
No 19
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.55 E-value=0.13 Score=52.66 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSL 133 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaL 133 (520)
..+...|..++..|..+...+..+.-.++.++.....+..++...
T Consensus 50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e 94 (312)
T PF00038_consen 50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE 94 (312)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 557777777777777777776666666665554444444444333
No 20
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.50 E-value=0.032 Score=56.35 Aligned_cols=170 Identities=15% Similarity=0.195 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHhhhhhhccccCCCCCCHHHHHHHHHHHHHHHhcC
Q 009998 114 DELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHE 193 (520)
Q Consensus 114 akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~klre~~nArsk~~f~SveEID~rI~~LE~~Iqhg 193 (520)
..+..+.-++......|+.++++...++..+.....+++.++..+..+. ..+.++..+|..++..+ .+
T Consensus 17 ~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e-----------~ei~~~r~r~~~~e~kl-~~ 84 (239)
T COG1579 17 LEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLE-----------SEIQEIRERIKRAEEKL-SA 84 (239)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH-hc
Confidence 3344445555566677777777777777777777777777776665443 24567888899999888 44
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 194 IIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALD 273 (520)
Q Consensus 194 SLsL~EEKklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~~~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~ 273 (520)
.=+..+=..+-.||..++..+..+.. .+-.+..++..+.+++..++..+..++..+.++.
T Consensus 85 v~~~~e~~aL~~E~~~ak~r~~~le~--------------------el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~ 144 (239)
T COG1579 85 VKDERELRALNIEIQIAKERINSLED--------------------ELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE 144 (239)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666677777766554221 2222223344445555555555444444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 009998 274 EEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALL 318 (520)
Q Consensus 274 ~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~ 318 (520)
..+..++..+.+++...+..+..|....+...-.||+..+..
T Consensus 145 ---~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~yeri~~~ 186 (239)
T COG1579 145 ---ARLEEEVAEIREEGQELSSKREELKEKLDPELLSEYERIRKN 186 (239)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 344567777788888888888888888887777777765543
No 21
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.50 E-value=0.19 Score=61.55 Aligned_cols=242 Identities=15% Similarity=0.184 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHhhhhhhccccCCCCCCHHHHHHHHHHHHHHHh
Q 009998 112 LMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQ 191 (520)
Q Consensus 112 I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~klre~~nArsk~~f~SveEID~rI~~LE~~Iq 191 (520)
+...+..+.....++..++....+........+......+..++..|+.+- ......+.++.+|..++..++
T Consensus 417 ~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~ 488 (1311)
T TIGR00606 417 LQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLE--------GSSDRILELDQELRKAERELS 488 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------cChHHHHHHHHHHHHHHHHHH
Confidence 334444455555566666655555555555555555555555555554322 123467778888888888887
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhhhHHHHHhhccchhhHHHHHHHHHHHH------
Q 009998 192 HEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESM---GKKEDIQDQVKLMGSDLDGVKKESQAVWAKI------ 262 (520)
Q Consensus 192 hgSLsL~EEKklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~---~~ke~~~d~iK~l~~eLd~lKkeldalr~kI------ 262 (520)
..+-.. ....+-.+|..++.....+..- ...+...+ ........++..++.++..-..++..+....
T Consensus 489 ~~~~~~-~~~~~~~~i~~~~~~~~~le~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 564 (1311)
T TIGR00606 489 KAEKNS-LTETLKKEVKSLQNEKADLDRK---LRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTS 564 (1311)
T ss_pred HHHhhh-hhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666543 3333444444444333322211 11111111 1111111222222222222222222222211
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCHHHHH
Q 009998 263 --------SHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLK 334 (520)
Q Consensus 263 --------kel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~karela~~~~v~el~ 334 (520)
..+...+..+..++..++.+.+.+......+-..+..++.+........-.+...+. +...-.+..++=
T Consensus 565 ~~~~~~~~~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~---~~~~~~~~~~~L 641 (1311)
T TIGR00606 565 LLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLF---DVCGSQDEESDL 641 (1311)
T ss_pred hcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCchhHHHHH
Confidence 122233333444444444444444444444444444444444444444444444443 111123444566
Q ss_pred HHHHHHHHHHHHHHhCChHhHHHHHHHhHHHHhh
Q 009998 335 ELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDM 368 (520)
Q Consensus 335 ~~~~~eve~fm~~wn~~~~FR~dY~k~~~~s~~~ 368 (520)
.-+..+.+..+.-.+.-..-+..|.+++...+.+
T Consensus 642 ~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~~~ 675 (1311)
T TIGR00606 642 ERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDE 675 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6677888888888888888888899988888544
No 22
>PRK11637 AmiB activator; Provisional
Probab=97.43 E-value=0.12 Score=55.67 Aligned_cols=71 Identities=17% Similarity=0.307 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHH
Q 009998 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALG 159 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~ 159 (520)
..++.+|..++.+|..+......+..++..+..+-..+..++..+..+.......+.....+|..++..|.
T Consensus 50 ~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 50 KSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888888777777777777777766666666666666666666665555555555555555443
No 23
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.39 E-value=0.14 Score=51.19 Aligned_cols=218 Identities=16% Similarity=0.216 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHhhhhhhccccCCC
Q 009998 93 AKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGI 172 (520)
Q Consensus 93 akI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~klre~~nArsk~~ 172 (520)
+||..++.++....+....+..++.....++...-.++.+|......+-..++..-..+......|..+..
T Consensus 1 kK~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~--------- 71 (237)
T PF00261_consen 1 KKIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEK--------- 71 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHH---------
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------
Confidence 36777777777777777777777777777777777777777666665544444333333444443332221
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhccchhhHH
Q 009998 173 CSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVK 252 (520)
Q Consensus 173 f~SveEID~rI~~LE~~IqhgSLsL~EEKklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~~~d~iK~l~~eLd~lK 252 (520)
..++.+.....||.+..+..-.|..=-.-|+++...-..... .|....-++.-.-+..+...+++...-..+..|.
T Consensus 72 --~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~--k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE 147 (237)
T PF00261_consen 72 --RADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAER--KYEEVERKLKVLEQELERAEERAEAAESKIKELE 147 (237)
T ss_dssp --HHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH--HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Confidence 233444444444444333221111111111111110000000 0000000001111111111222222222233344
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 009998 253 KESQAVWAKISHLE-------GKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA 323 (520)
Q Consensus 253 keldalr~kIkel~-------~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~kare 323 (520)
.++..+.+.++.+. .....+...|..|...+..+-...+.+-.....|-.++|.+...++..+.....++.
T Consensus 148 ~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~ 225 (237)
T PF00261_consen 148 EELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQE 225 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444433 333444556777777777777777777777777777777777777766666655443
No 24
>PRK01156 chromosome segregation protein; Provisional
Probab=97.37 E-value=0.5 Score=55.48 Aligned_cols=28 Identities=7% Similarity=0.087 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 90 KIRAKIDLTDREIQRRNQARMQLMDELR 117 (520)
Q Consensus 90 ~lkakI~~a~keI~kl~q~R~~I~akl~ 117 (520)
.+..+|..+..+|..++.....|...+.
T Consensus 473 ~~~~~i~~l~~~i~~l~~~~~~l~~~~~ 500 (895)
T PRK01156 473 HYNEKKSRLEEKIREIEIEVKDIDEKIV 500 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554444444443
No 25
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.34 E-value=0.084 Score=61.77 Aligned_cols=144 Identities=17% Similarity=0.268 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 201 KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQ 280 (520)
Q Consensus 201 KklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~~~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lq 280 (520)
+|+=.||.+|...-. +..++...++..+..+..++.+.-.++..+...|++....+..+..++..+.
T Consensus 393 kwir~ei~~l~~~i~-------------~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k 459 (1200)
T KOG0964|consen 393 KWIRSEIEKLKRGIN-------------DTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELK 459 (1200)
T ss_pred HHHHHHHHHHHHHHh-------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHH
Confidence 677778888776632 2222333333333333333444444444455555555556666666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH-H----HHHHHHhCChHhH
Q 009998 281 QEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEV-E----KYMTLWNNNKAFR 355 (520)
Q Consensus 281 eel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~karela~~~~v~el~~~~~~ev-e----~fm~~wn~~~~FR 355 (520)
.+++++...|..++-+=+.|+......-...-.....++.+-.-....-+..+...|...- + -.|++.-.+..|+
T Consensus 460 ~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~~v~~~f~ 539 (1200)
T KOG0964|consen 460 RELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMNRSVANGIDSVRKIKEELKPNGVFGTVYELIKVPNKFK 539 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHhcccccceehhhhhcCCHHHH
Confidence 7777777777777777777777776666666655555555422111222333333332211 1 2466777777776
Q ss_pred HH
Q 009998 356 DD 357 (520)
Q Consensus 356 ~d 357 (520)
--
T Consensus 540 ta 541 (1200)
T KOG0964|consen 540 TA 541 (1200)
T ss_pred hH
Confidence 43
No 26
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.31 E-value=0.17 Score=58.99 Aligned_cols=259 Identities=19% Similarity=0.300 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 009998 91 IRAKIDLTDREIQRRNQARMQ---------------------LMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRK 149 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~R~~---------------------I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~k 149 (520)
+|.+|+.+.-++...+....+ +...+.++..+..-|.+.+.+|+.........++.+-.
T Consensus 285 mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~ 364 (775)
T PF10174_consen 285 MKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQA 364 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666555533333 33444445567777778888888887777777777777
Q ss_pred hhHHHHHHHH-------hhhhhhccccCCCCCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 150 EMEPLHQALG-------KLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAA 222 (520)
Q Consensus 150 Eik~Lq~~L~-------klre~~nArsk~~f~SveEID~rI~~LE~~IqhgSLsL~EEKklLkEIk~Lkk~Rk~v~a~~~ 222 (520)
.+..++..+. .+++...... .-+.-+..+|..|+..+- ..++++-.+-..|.. -.++...-.
T Consensus 365 ~~~~~qeE~~~~~~Ei~~l~d~~d~~e----~ki~~Lq~kie~Lee~l~------ekd~ql~~~k~Rl~~-~~d~~~~~~ 433 (775)
T PF10174_consen 365 QIEKLQEEKSRLQGEIEDLRDMLDKKE----RKINVLQKKIENLEEQLR------EKDRQLDEEKERLSS-QADSSNEDE 433 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhc-cccccchHH
Confidence 7777765443 3333211100 012224444555555543 234444444444442 111111112
Q ss_pred HHHHHHhhhhhhhhhHHHHHhh--------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 223 MRAKIQESMGKKEDIQDQVKLM--------GSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAF 294 (520)
Q Consensus 223 ~~akiq~s~~~ke~~~d~iK~l--------~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay 294 (520)
..+.+..++..++-++..+... ..+++..++++..++.++..+...+....-.+..++++...+..-..+.+
T Consensus 434 ~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~ 513 (775)
T PF10174_consen 434 ALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKD 513 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhh
Confidence 2344445555554444443322 34566667777777777666666666666666777777777777777778
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc--------cCHHH---HHHHHHHHHHHHHHHHhCChHhHHHHHH
Q 009998 295 ANIKELRKQRDEGNAYFFQYRALLNEAKAMSVK--------KDVQG---LKELSNSEVEKYMTLWNNNKAFRDDYEK 360 (520)
Q Consensus 295 ~~i~~LRke~de~n~~f~~~r~~~~karela~~--------~~v~e---l~~~~~~eve~fm~~wn~~~~FR~dY~k 360 (520)
..|..|...+...+..+-..-..+.+++..+.. +.+.. --.-|.+|||+.|...-+-..=+.+-.+
T Consensus 514 s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ 590 (775)
T PF10174_consen 514 SEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEK 590 (775)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 888888888877777777777777664322221 11222 2345789999999877655554544433
No 27
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.27 E-value=0.25 Score=58.06 Aligned_cols=244 Identities=18% Similarity=0.231 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHhhhhhhcccc
Q 009998 90 KIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARS 169 (520)
Q Consensus 90 ~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~klre~~nArs 169 (520)
.|.+.++.++.+|...++.-.++...++..-..|.....+...|+.+....+..+......+.+-...|..++.
T Consensus 682 ~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~------ 755 (1200)
T KOG0964|consen 682 ELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKT------ 755 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHH------
Confidence 45666666666676666666666666666555555555555555444444433333333333333333332221
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcC---CCCcHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHh
Q 009998 170 GGICSSEEELDDLIRSLQYRIQHE---IIPLSEEK---QILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKL 243 (520)
Q Consensus 170 k~~f~SveEID~rI~~LE~~Iqhg---SLsL~EEK---klLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~~~d~iK~ 243 (520)
+...+...-..+|..+.+. -|++.|.. ++=.||.+|......+.. +.++ .. .....
T Consensus 756 -----~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~---------er~~-~~---~rk~~ 817 (1200)
T KOG0964|consen 756 -----SLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALRE---------ERID-IE---TRKTA 817 (1200)
T ss_pred -----HHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHH-HH---HHHHH
Confidence 2222333333444444432 24444443 233455555544332221 1111 11 11111
Q ss_pred hccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 009998 244 MGSDLD-GVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAK 322 (520)
Q Consensus 244 l~~eLd-~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~kar 322 (520)
+...|+ .|.+.++.+.+.|+.+.+- ....++...+.++..+......+...+..|....+.+.+..-+.+..+-+++
T Consensus 818 le~~l~~kL~~r~~~l~~ei~~~~d~--~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~ 895 (1200)
T KOG0964|consen 818 LEANLNTKLYKRVNELEQEIGDLNDS--SRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAK 895 (1200)
T ss_pred HHHHHHHHHHhhhhHHHHHhhhcccc--cchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222 2455555555544444321 2344567777788888888888888888899999999998889999999988
Q ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHhCChHhHHHHHHHh
Q 009998 323 AMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRL 362 (520)
Q Consensus 323 ela~~~~v~el~~~~~~eve~fm~~wn~~~~FR~dY~k~~ 362 (520)
.++...... .. +..++|+.|..-+.--.=|++|.++|
T Consensus 896 ~lek~~~~~--~~-~dKe~Ek~~~rk~~Ll~KreE~~ekI 932 (1200)
T KOG0964|consen 896 NLEKEKKDN--IN-FDKELEKLVRRKHMLLKKREECCEKI 932 (1200)
T ss_pred HHHHHHhhh--hh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 886553222 22 23889999988888777788777763
No 28
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.15 E-value=0.3 Score=58.41 Aligned_cols=69 Identities=17% Similarity=0.262 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 009998 255 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA 323 (520)
Q Consensus 255 ldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~kare 323 (520)
...++.+|......+..-+..++.+..++...+.++.++-+.+..|+.+...++...+..|..+..++.
T Consensus 523 ~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks 591 (1293)
T KOG0996|consen 523 VEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKS 591 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444445666666666666666667777777777777666666666666666655
No 29
>PRK01156 chromosome segregation protein; Provisional
Probab=97.10 E-value=0.78 Score=53.86 Aligned_cols=38 Identities=13% Similarity=0.047 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 95 IDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRS 132 (520)
Q Consensus 95 I~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLka 132 (520)
|.....+|..+...-..|...+..+......+...++.
T Consensus 471 i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~~~ 508 (895)
T PRK01156 471 INHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEY 508 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556555555555555555554444444444333
No 30
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.93 E-value=1.1 Score=50.99 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009998 90 KIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGR 138 (520)
Q Consensus 90 ~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk 138 (520)
.+..+++.++.++..+......+...+.....+...+..++..++....
T Consensus 206 ~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~ 254 (650)
T TIGR03185 206 SILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFR 254 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666666666666666666655443
No 31
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.91 E-value=1.1 Score=50.50 Aligned_cols=101 Identities=12% Similarity=0.264 Sum_probs=67.3
Q ss_pred HHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------h
Q 009998 238 QDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG---------N 308 (520)
Q Consensus 238 ~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~---------n 308 (520)
...+......+..++.+++.+..+++.+.+....+.+.+..|...-..+....+..-..+..++...... .
T Consensus 368 ~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~ 447 (569)
T PRK04778 368 TERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYL 447 (569)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHH
Confidence 3344455555777788888888888877777777777777777777777777777777777666544332 3
Q ss_pred HHHHHHHHHHHHHHHHHhcc--CHHHHHHHHH
Q 009998 309 AYFFQYRALLNEAKAMSVKK--DVQGLKELSN 338 (520)
Q Consensus 309 ~~f~~~r~~~~karela~~~--~v~el~~~~~ 338 (520)
..|+.....+..+......| |+.++...+.
T Consensus 448 ~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~ 479 (569)
T PRK04778 448 EMFFEVSDEIEALAEELEEKPINMEAVNRLLE 479 (569)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 45666666666665555556 7777774433
No 32
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.86 E-value=0.25 Score=58.66 Aligned_cols=82 Identities=16% Similarity=0.292 Sum_probs=47.8
Q ss_pred HHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 009998 240 QVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLN 319 (520)
Q Consensus 240 ~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~ 319 (520)
.++.+..++..+...+..|+.+++++...+.....+...+..+...+...+.---.+|+.|++-.+.....|-.+-..+-
T Consensus 402 k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG~~m~~lL 481 (1074)
T KOG0250|consen 402 KLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFGPNMPQLL 481 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcchhhHHHH
Confidence 33333334444444444444444444445555555555566666666666666677778888877777777776655554
Q ss_pred HH
Q 009998 320 EA 321 (520)
Q Consensus 320 ka 321 (520)
.+
T Consensus 482 ~~ 483 (1074)
T KOG0250|consen 482 RA 483 (1074)
T ss_pred HH
Confidence 44
No 33
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.81 E-value=1 Score=50.29 Aligned_cols=28 Identities=7% Similarity=0.217 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 89 PKIRAKIDLTDREIQRRNQARMQLMDEL 116 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~akl 116 (520)
...+.++..++.++..+...++.-....
T Consensus 133 ~~~k~EL~~lr~e~~~~~~~k~~A~~~a 160 (522)
T PF05701_consen 133 DSVKQELEKLRQELASALDAKNAALKQA 160 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777666666544443
No 34
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.75 E-value=0.83 Score=54.10 Aligned_cols=38 Identities=26% Similarity=0.453 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 009998 102 IQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSV 143 (520)
Q Consensus 102 I~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~ 143 (520)
|+.+++.+.+ ++..+.+-..+-.+|+.|..+...|+..
T Consensus 676 l~~l~~~~~~----~~~~q~el~~le~eL~~le~~~~kf~~l 713 (1174)
T KOG0933|consen 676 LQKLKQAQKE----LRAIQKELEALERELKSLEAQSQKFRDL 713 (1174)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455544433 4455556666777777777766655433
No 35
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.73 E-value=1.5 Score=55.77 Aligned_cols=255 Identities=20% Similarity=0.243 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHhhhhhhcc--c
Q 009998 91 IRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNA--R 168 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~klre~~nA--r 168 (520)
+...|..++-.+...+.........++........|..++...+......++.+..--..+..|++.+..++....+ |
T Consensus 1609 le~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~R 1688 (1930)
T KOG0161|consen 1609 LEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALER 1688 (1930)
T ss_pred hhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444443444444444444433333333333333333333333333333321111 1
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHH
Q 009998 169 SGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAM----------------------RAK 226 (520)
Q Consensus 169 sk~~f~SveEID~rI~~LE~~IqhgSLsL~EEKklLkEIk~Lkk~Rk~v~a~~~~----------------------~ak 226 (520)
++ -..+-+++....++.....++|....+-+++=.+|..|+.....+...... ++.
T Consensus 1689 ar--r~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~ 1766 (1930)
T KOG0161|consen 1689 AR--RQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQET 1766 (1930)
T ss_pred HH--HhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 11 123445555555555555666666666666666666666655544331110 111
Q ss_pred HHhhhhhhhhhHHHHHhhccchh--------hHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 009998 227 IQESMGKKEDIQDQVKLMGSDLD--------GVKKESQAVWAKISHLEGKVKALDE-------EIEALQQEVNDVAEKRD 291 (520)
Q Consensus 227 iq~s~~~ke~~~d~iK~l~~eLd--------~lKkeldalr~kIkel~~k~~al~~-------ei~~Lqeel~al~~krd 291 (520)
...+-..+..++.++|.+...|+ +.++.+..+.++|.+|+..+..-.. .+......+.++..+..
T Consensus 1767 ~~~le~~k~~LE~~~kdLq~rL~e~E~~a~~~~k~~i~~Learir~LE~~l~~E~~~~~e~~k~~rk~er~vkEl~~q~e 1846 (1930)
T KOG0161|consen 1767 SQKLERLKKSLERQVKDLQLRLDEAEQAALKGGKKQIAKLEARIRELESELEGEQRRKAEAIKGLRKKERRVKELQFQVE 1846 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHhHhhhhhHHHhHHHHHHHHHHHHHHHHhh
Confidence 11122222334444444433333 3566677777777777666643221 23334444555555555
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHHH
Q 009998 292 KAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVK--KDVQGLKELSNSEVEKYMTL 347 (520)
Q Consensus 292 eay~~i~~LRke~de~n~~f~~~r~~~~karela~~--~~v~el~~~~~~eve~fm~~ 347 (520)
+=-.++..+...+|..+....+|++-+-.+.+.+.+ ..++-+|.-+..--|++=++
T Consensus 1847 ed~k~~~~~q~~~dkl~~k~~~~krQleeaE~~~~~~~~k~R~~q~ele~a~erad~~ 1904 (1930)
T KOG0161|consen 1847 EDKKNIERLQDLVDKLQAKIKQYKRQLEEAEEEANQNLSKYRKLQRELEEAEERADTA 1904 (1930)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777788888888888888887777766 35566666665555555443
No 36
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.69 E-value=1.7 Score=49.56 Aligned_cols=44 Identities=9% Similarity=-0.021 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009998 97 LTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQY 140 (520)
Q Consensus 97 ~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~ 140 (520)
.+..++..+......+...+..+..+...+..+++.+..+...+
T Consensus 206 ~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l 249 (650)
T TIGR03185 206 SILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESL 249 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444555555555444444433
No 37
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.68 E-value=1.6 Score=53.37 Aligned_cols=73 Identities=15% Similarity=0.283 Sum_probs=52.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHH
Q 009998 86 YDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQAL 158 (520)
Q Consensus 86 pDd~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L 158 (520)
.+++.+.+++..+...|..+.....++-..+.........+..++..+..+..+.+..+..-..+...++..+
T Consensus 600 ~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 672 (1201)
T PF12128_consen 600 ASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEI 672 (1201)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3667999999999999999888887787777777777777777776666666665555555555555554444
No 38
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.23 Score=57.13 Aligned_cols=41 Identities=22% Similarity=0.405 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAE 288 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~ 288 (520)
+++|.++...--+.|+-.+.+++.++..+++++-....+|.
T Consensus 551 ldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk 591 (1118)
T KOG1029|consen 551 LDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYK 591 (1118)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455554444444444445555555555555444444444
No 39
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.53 E-value=2 Score=48.40 Aligned_cols=107 Identities=19% Similarity=0.294 Sum_probs=71.7
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 009998 243 LMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAK 322 (520)
Q Consensus 243 ~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~kar 322 (520)
.+...|..+.+..+.+...+..-..-+..+...+..+.+.++.+..........+..||+.-.........++..+...+
T Consensus 348 ~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ik 427 (560)
T PF06160_consen 348 ELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIK 427 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444567777888888899999999999999999999888888888888888888887
Q ss_pred HHHhccCHHHH-------HHHHHHHHHHHHHHHh
Q 009998 323 AMSVKKDVQGL-------KELSNSEVEKYMTLWN 349 (520)
Q Consensus 323 ela~~~~v~el-------~~~~~~eve~fm~~wn 349 (520)
....+-|.-.| =..+.+++++.+...|
T Consensus 428 R~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~ 461 (560)
T PF06160_consen 428 RRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELN 461 (560)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777555333 2233455555555544
No 40
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.38 E-value=2.6 Score=48.05 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHH
Q 009998 181 DLIRSLQYRIQHEIIPLSEEKQILRE 206 (520)
Q Consensus 181 ~rI~~LE~~IqhgSLsL~EEKklLkE 206 (520)
.++..|..+.+.--.||.+|.+-|++
T Consensus 408 ~rl~~L~~qWe~~R~pL~~e~r~lk~ 433 (594)
T PF05667_consen 408 QRLVELAQQWEKHRAPLIEEYRRLKE 433 (594)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44555666666666667766665553
No 41
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.16 E-value=4.7 Score=48.82 Aligned_cols=14 Identities=14% Similarity=0.389 Sum_probs=10.4
Q ss_pred hhHhHhhHHHHHHH
Q 009998 498 KEIIYGTYFFTITV 511 (520)
Q Consensus 498 ~~~~~~~~~~~~~~ 511 (520)
.|..+|++|.+.++
T Consensus 1138 dEFm~gf~~Is~kL 1151 (1293)
T KOG0996|consen 1138 DEFMAGFNIISMKL 1151 (1293)
T ss_pred HHHHHHHHHHHHHH
Confidence 67888888877553
No 42
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.11 E-value=4.7 Score=48.40 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCChHhHHHHHHHhHHHHhhhhhccCCCCCCCCCC
Q 009998 330 VQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEK 383 (520)
Q Consensus 330 v~el~~~~~~eve~fm~~wn~~~~FR~dY~k~~~~s~~~R~~~~DGR~~~pde~ 383 (520)
-..|+.+..++-++.+ .|= .|+-.+|.-..+|-...-+-..||=.+
T Consensus 456 ~~~l~~lk~~k~dkvs-------~FG-~~m~~lL~~I~r~~~~f~~~P~GPlG~ 501 (1074)
T KOG0250|consen 456 SEELKDLKKTKTDKVS-------AFG-PNMPQLLRAIERRKRRFQTPPKGPLGK 501 (1074)
T ss_pred HHHHHHHHhcccchhh-------hcc-hhhHHHHHHHHHHHhcCCCCCCCCccc
Confidence 3445555554444433 344 777888887777766555555555444
No 43
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.04 E-value=4.4 Score=47.53 Aligned_cols=90 Identities=17% Similarity=0.326 Sum_probs=50.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 009998 247 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSV 326 (520)
Q Consensus 247 eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~karela~ 326 (520)
+|..-+.++.++..++..+.......+.-|+.|+..+.+......-+-..+..||-.+++++..+-+....+..+.+-.+
T Consensus 295 eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~ 374 (775)
T PF10174_consen 295 ELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKS 374 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555556666666666666666666666666666666666655555555555544433
Q ss_pred c--cCHHHHHHH
Q 009998 327 K--KDVQGLKEL 336 (520)
Q Consensus 327 ~--~~v~el~~~ 336 (520)
. +.+..+...
T Consensus 375 ~~~~Ei~~l~d~ 386 (775)
T PF10174_consen 375 RLQGEIEDLRDM 386 (775)
T ss_pred HHHHHHHHHHHH
Confidence 3 344444433
No 44
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.01 E-value=1.1 Score=53.22 Aligned_cols=96 Identities=11% Similarity=0.210 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc--
Q 009998 250 GVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVK-- 327 (520)
Q Consensus 250 ~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~karela~~-- 327 (520)
+|..+.....++++.....+.+....+..+.+.++.+.+...++++.+..|+++.+......-+.+..+-.++.-..+
T Consensus 280 eLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~ 359 (1072)
T KOG0979|consen 280 ELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETE 359 (1072)
T ss_pred hHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 344555556666666666666666666777777777777777777777777777777777676766666666555444
Q ss_pred ---cCHHHHHHHHHHHHHHHH
Q 009998 328 ---KDVQGLKELSNSEVEKYM 345 (520)
Q Consensus 328 ---~~v~el~~~~~~eve~fm 345 (520)
.-+.+.++.-....++.|
T Consensus 360 ~~e~~~~~~~ei~~~~~~~~~ 380 (1072)
T KOG0979|consen 360 DPENPVEEDQEIMKEVLQKKS 380 (1072)
T ss_pred CccccchhHHHHHHHHHHHHh
Confidence 234444444444444443
No 45
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=4.3 Score=47.29 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCcHHHHHH
Q 009998 174 SSEEELDDLIRSLQYRIQHEIIPLSEEKQI 203 (520)
Q Consensus 174 ~SveEID~rI~~LE~~IqhgSLsL~EEKkl 203 (520)
.-.+-|+.++.+|+.+|+.--..+.--|..
T Consensus 444 ~eletLn~k~qqls~kl~Dvr~~~tt~kt~ 473 (1118)
T KOG1029|consen 444 QELETLNFKLQQLSGKLQDVRVDITTQKTE 473 (1118)
T ss_pred HHHHHHHHHHHHHhhhhhhheeccchHHHH
Confidence 345667888888888888777766555543
No 46
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.91 E-value=4 Score=45.96 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 009998 274 EEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 309 (520)
Q Consensus 274 ~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~ 309 (520)
.+|..|+.++..+..--++-+.....|..++...++
T Consensus 371 ~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D 406 (546)
T PF07888_consen 371 DEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKD 406 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456677777777777777777777777777765443
No 47
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.79 E-value=5.7 Score=49.83 Aligned_cols=12 Identities=25% Similarity=0.224 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 009998 314 YRALLNEAKAMS 325 (520)
Q Consensus 314 ~r~~~~karela 325 (520)
....+..|+.+.
T Consensus 419 ~i~~Le~~~~~~ 430 (1486)
T PRK04863 419 AVQALERAKQLC 430 (1486)
T ss_pred HHHHHHHHHHHh
Confidence 334445556555
No 48
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.78 E-value=8.2 Score=48.50 Aligned_cols=165 Identities=15% Similarity=0.193 Sum_probs=84.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH--Hh----hh---hhhhhhH
Q 009998 172 ICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILRE----IKQLEGTREKVMANAAMRAKI--QE----SM---GKKEDIQ 238 (520)
Q Consensus 172 ~f~SveEID~rI~~LE~~IqhgSLsL~EEKklLkE----Ik~Lkk~Rk~v~a~~~~~aki--q~----s~---~~ke~~~ 238 (520)
+..|.+++...+.+.+.+++.-+-.|.+-+.-+.. ++++++....+....+..... ++ .+ .+....-
T Consensus 433 ~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~ 512 (1486)
T PRK04863 433 PDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLA 512 (1486)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHH
Confidence 35689999999999999998777777665554443 333444433333311111000 00 00 0011122
Q ss_pred HHHHhhccchhhHHHHHHHHHH---HHHHHHHH----------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 239 DQVKLMGSDLDGVKKESQAVWA---KISHLEGK----------V----KALDEEIEALQQEVNDVAEKRDKAFANIKELR 301 (520)
Q Consensus 239 d~iK~l~~eLd~lKkeldalr~---kIkel~~k----------~----~al~~ei~~Lqeel~al~~krdeay~~i~~LR 301 (520)
+++-.++..+.+|+..+..-+. -+.+.... + ......+..|.++...+.+.|..+...+..|.
T Consensus 513 ~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~ 592 (1486)
T PRK04863 513 EQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQ 592 (1486)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333334444444442222111 11111111 1 12223456666777777777777777777777
Q ss_pred HHHHHHhH---HHHHHHHHHHHHHHHHhc--cCHHHHHHH
Q 009998 302 KQRDEGNA---YFFQYRALLNEAKAMSVK--KDVQGLKEL 336 (520)
Q Consensus 302 ke~de~n~---~f~~~r~~~~karela~~--~~v~el~~~ 336 (520)
.++.+... .|.++...+.+.++..-. -+...+-.+
T Consensus 593 ~~i~~l~~~ap~W~~a~~al~~L~eq~g~~~~~~~~v~~~ 632 (1486)
T PRK04863 593 ARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEY 632 (1486)
T ss_pred HHHHHHHHhChHHHhhHHHHHHHHHhcchhhcCHHHHHHH
Confidence 76655444 788888888888877433 244444433
No 49
>PRK09039 hypothetical protein; Validated
Probab=95.77 E-value=2.4 Score=45.02 Aligned_cols=62 Identities=21% Similarity=0.362 Sum_probs=35.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 246 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 307 (520)
Q Consensus 246 ~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~ 307 (520)
.+|+..+......+.++.-|+.++.+++..+..|+..++++.....++...|..|...++..
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555566666666666666666666666665555443
No 50
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.72 E-value=4.3 Score=49.78 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHhc
Q 009998 176 EEELDDLIRSLQYRIQH 192 (520)
Q Consensus 176 veEID~rI~~LE~~Iqh 192 (520)
..++|..|..+.-.++.
T Consensus 727 ~~~~d~~i~~i~~~i~~ 743 (1201)
T PF12128_consen 727 EAELDEQIEQIKQEIAA 743 (1201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555444
No 51
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.71 E-value=8.2 Score=48.04 Aligned_cols=42 Identities=24% Similarity=0.221 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 91 IRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRS 132 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLka 132 (520)
-...|++++.+|..+......+.+.+..+..++..|..++.+
T Consensus 740 R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~ 781 (1353)
T TIGR02680 740 RLRRIAELDARLAAVDDELAELARELRALGARQRALADELAG 781 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777777766666666666666666666555433
No 52
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.59 E-value=1.2 Score=45.31 Aligned_cols=89 Identities=21% Similarity=0.368 Sum_probs=49.1
Q ss_pred hhhhHHHHHhhccchhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 009998 234 KEDIQDQVKLMGSDLDGVKKESQAVWAKISHL--EGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYF 311 (520)
Q Consensus 234 ke~~~d~iK~l~~eLd~lKkeldalr~kIkel--~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f 311 (520)
.+.+..++..+..+|..++..++..+.++..+ ...+.+++-+++.++.+...+......+.+.+..|.+++.......
T Consensus 54 ~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~ 133 (239)
T COG1579 54 LEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERL 133 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556555555666666666665555444 2344555556666555555555555555566666666555555555
Q ss_pred HHHHHHHHHHH
Q 009998 312 FQYRALLNEAK 322 (520)
Q Consensus 312 ~~~r~~~~kar 322 (520)
-..++.+..++
T Consensus 134 ~~~e~~~~e~~ 144 (239)
T COG1579 134 ERLEKNLAEAE 144 (239)
T ss_pred HHHHHHHHHHH
Confidence 54444444443
No 53
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.53 E-value=7.3 Score=46.17 Aligned_cols=88 Identities=20% Similarity=0.308 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCHHHHHHHHH----------------HHHHHHHHH
Q 009998 284 NDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSN----------------SEVEKYMTL 347 (520)
Q Consensus 284 ~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~karela~~~~v~el~~~~~----------------~eve~fm~~ 347 (520)
..+.+++|.+.-++.+|..+++......|.+--.+.|.|++.++-+ ..|+++.+ .+-=-|--+
T Consensus 493 ~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lq-dqlqe~~dq~~Sseees~q~~s~~~et~dyk~~ 571 (1243)
T KOG0971|consen 493 LDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQ-DQLQELTDQQESSEEESQQPPSVDPETFDYKIK 571 (1243)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhHHHhcCCCCCchhhhHHHHH
Confidence 4577788888888899999999999999999999999999987743 12333322 112234455
Q ss_pred HhCChHhHHHHH---HHhHHHHhhhhhc
Q 009998 348 WNNNKAFRDDYE---KRLLQSLDMRQLS 372 (520)
Q Consensus 348 wn~~~~FR~dY~---k~~~~s~~~R~~~ 372 (520)
+.-+++|=++-+ +-|-.+.-+|...
T Consensus 572 fa~skayaraie~QlrqiEv~~a~rh~~ 599 (1243)
T KOG0971|consen 572 FAESKAYARAIEMQLRQIEVAQANRHMS 599 (1243)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777766543 4455566666543
No 54
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.44 E-value=3.1 Score=49.50 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=12.8
Q ss_pred chhhhHHHHHHhhhHHHHHHHH
Q 009998 451 EKKVDEAKLREMKKEEDRAKAR 472 (520)
Q Consensus 451 ~~e~d~a~lKe~~r~ee~~Kak 472 (520)
+.|...+.|+.|++--+.-|.|
T Consensus 991 ~~E~~~~~lk~k~~~Ie~Dk~k 1012 (1174)
T KOG0933|consen 991 RAEEKEAALKTKKEIIEKDKSK 1012 (1174)
T ss_pred HHHHHHHHHHHHHHHHHhhHHH
Confidence 4455567777776655544443
No 55
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.37 E-value=3.4 Score=41.38 Aligned_cols=64 Identities=13% Similarity=0.259 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYF 311 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f 311 (520)
.+.+...|..|..+++++..........+..|+.+++.+.......-.....+..++|...+++
T Consensus 171 e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el 234 (237)
T PF00261_consen 171 EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666777777777777666677777777777777777777777777777777666543
No 56
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.12 E-value=8 Score=44.38 Aligned_cols=42 Identities=24% Similarity=0.373 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 009998 273 DEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQY 314 (520)
Q Consensus 273 ~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~ 314 (520)
...+..|+.++..+.......-..+..|..++|.....+-+|
T Consensus 201 ~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy 242 (617)
T PF15070_consen 201 QKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQY 242 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444
No 57
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.01 E-value=6.5 Score=45.71 Aligned_cols=60 Identities=30% Similarity=0.448 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHhh
Q 009998 95 IDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKL 161 (520)
Q Consensus 95 I~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~kl 161 (520)
+..|+.+|++ +++.|...|..=++|+.++..+..-.+.++..+...+.+.+.|+..+..|
T Consensus 420 ~~rLE~dvkk-------LraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L 479 (697)
T PF09726_consen 420 ISRLEADVKK-------LRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNL 479 (697)
T ss_pred HHHHHHHHHH-------HHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555544 45667888888889999988888888889999999999999888877644
No 58
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.99 E-value=6.9 Score=42.83 Aligned_cols=124 Identities=14% Similarity=0.125 Sum_probs=59.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHhhhhhh
Q 009998 86 YDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTN 165 (520)
Q Consensus 86 pDd~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~klre~~ 165 (520)
|++-+....+++.+.+|..++.....+..+...+......+-.++..+..+....-..+....+.|..+...|..+..+.
T Consensus 31 ~s~~a~~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 31 FSAAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33433335566666666666655554444444444444455555555554444444444444444444443333322211
Q ss_pred -----------cc---ccCCC----CCCHHHHH--HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 009998 166 -----------NA---RSGGI----CSSEEELD--DLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVM 218 (520)
Q Consensus 166 -----------nA---rsk~~----f~SveEID--~rI~~LE~~IqhgSLsL~EEKklLkEIk~Lkk~Rk~v~ 218 (520)
+| .|.++ --|.++.. .++..+...|.++ ....|..|.+.+..+.
T Consensus 111 r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~---------~~~~i~~l~~~~~~l~ 174 (420)
T COG4942 111 REQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPA---------RAERIDALKATLKQLA 174 (420)
T ss_pred HHHHHHHHHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHH---------HHHHHHHHHHHHHHHH
Confidence 11 22222 35566655 4555555555543 4556666666665544
No 59
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.86 E-value=8.8 Score=43.37 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009998 100 REIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGR 138 (520)
Q Consensus 100 keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk 138 (520)
++|..||....-+++++.-+-++=..|.-+|..++.-..
T Consensus 42 ~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~ 80 (546)
T KOG0977|consen 42 KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVG 80 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 456677777777778887777777777777777766543
No 60
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.78 E-value=10 Score=43.80 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=18.5
Q ss_pred ChHhHHHHHHHhHHHHhhhhhccCCC
Q 009998 351 NKAFRDDYEKRLLQSLDMRQLSRDGR 376 (520)
Q Consensus 351 ~~~FR~dY~k~~~~s~~~R~~~~DGR 376 (520)
.-+.|+||.+.-..-|.||+.--.-|
T Consensus 602 ~aarrEd~~R~Ei~~LqrRlqaaE~R 627 (961)
T KOG4673|consen 602 QAARREDMFRGEIEDLQRRLQAAERR 627 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888888888887654444
No 61
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.74 E-value=4.9 Score=45.30 Aligned_cols=48 Identities=19% Similarity=0.313 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 009998 267 GKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQY 314 (520)
Q Consensus 267 ~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~ 314 (520)
+.+..+...++.|..++..+-..=..+-..|..|+-+.++-...|-+.
T Consensus 296 EEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~ 343 (546)
T KOG0977|consen 296 EELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQA 343 (546)
T ss_pred HHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhh
Confidence 333344444444444444444444444555566666666655544443
No 62
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=94.71 E-value=9.4 Score=46.92 Aligned_cols=193 Identities=17% Similarity=0.236 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhccchhhHHHHH
Q 009998 176 EEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKES 255 (520)
Q Consensus 176 veEID~rI~~LE~~IqhgSLsL~EEKklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~~~d~iK~l~~eLd~lKkel 255 (520)
.+....+|..+-..+.|......-...+..|-..+...+..+.. .+..+. ...+++.+.+ -.+..++.+.
T Consensus 797 ~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rk------e~E~~~---k~~~~~~~~i-~~l~~~~~e~ 866 (1294)
T KOG0962|consen 797 LKLREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRK------EIECLQ---KEVIEQEREI-SRLINLRNEL 866 (1294)
T ss_pred HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHH------HHHHHH---HHHHHHHHHH-HHHHHHHHHH
Confidence 34456667777777777555544444445555553333333221 001100 0111111110 0011233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCHHHHHH
Q 009998 256 QAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKE 335 (520)
Q Consensus 256 dalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~karela~~~~v~el~~ 335 (520)
-....++...-.....+..++..|+++...++.+++++-+.+.-|....++...+|++-...-.- .+..++..+..+.+
T Consensus 867 k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~-~~~~aqk~~~~ine 945 (1294)
T KOG0962|consen 867 KEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNT-SEKLAQKKRNDINE 945 (1294)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHH
Confidence 33334444444555677788999999999999999999999999999999999999988776554 44555555555443
Q ss_pred HHHHHHHHHHHHHhCChHhHH----HHHHHhHHHHhhhhhccCCCCCCCCCC
Q 009998 336 LSNSEVEKYMTLWNNNKAFRD----DYEKRLLQSLDMRQLSRDGRIRNPDEK 383 (520)
Q Consensus 336 ~~~~eve~fm~~wn~~~~FR~----dY~k~~~~s~~~R~~~~DGR~~~pde~ 383 (520)
=+..|+...+.+..|+. +|-..+++.+..|+..+|+|+++--..
T Consensus 946 ----~~s~l~~~~~~~~~~~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~~ 993 (1294)
T KOG0962|consen 946 ----KVSLLHQIYKLNECFEQYGFDDLRIAQLSESEEHLEERDNEVNEIKQK 993 (1294)
T ss_pred ----HHHHHHHHHHhHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677887778888875 344667889999999999998765433
No 63
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.63 E-value=11 Score=43.23 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 90 KIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKT 135 (520)
Q Consensus 90 ~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~ 135 (520)
..........+++..+......|...+..+......+..+++.+..
T Consensus 318 ~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~ 363 (594)
T PF05667_consen 318 TEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEE 363 (594)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555544444444444444444444444444433
No 64
>PRK09039 hypothetical protein; Validated
Probab=94.58 E-value=6.2 Score=41.92 Aligned_cols=49 Identities=22% Similarity=0.217 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009998 92 RAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQY 140 (520)
Q Consensus 92 kakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~ 140 (520)
...|...+.++..++..-..+..-+.--+.+...+...+..++.+....
T Consensus 45 s~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a 93 (343)
T PRK09039 45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAA 93 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3445555555555554444455555556677777777777776665533
No 65
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.39 E-value=16 Score=44.18 Aligned_cols=92 Identities=15% Similarity=0.237 Sum_probs=81.0
Q ss_pred hhhhhHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 009998 233 KKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFF 312 (520)
Q Consensus 233 ~ke~~~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~ 312 (520)
-...++++++.+...+..+.+.++.+...|++++..+..+..++++|+...-.+..+-.++..++...+.++......++
T Consensus 403 ~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~ 482 (1141)
T KOG0018|consen 403 RRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDASADRH 482 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhc
Confidence 35557778888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 009998 313 QYRALLNEAKAM 324 (520)
Q Consensus 313 ~~r~~~~karel 324 (520)
...|.++...-+
T Consensus 483 e~sR~~~~~eav 494 (1141)
T KOG0018|consen 483 EGSRRSRKQEAV 494 (1141)
T ss_pred ccHHHHHHHHHH
Confidence 888877765443
No 66
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.23 E-value=10 Score=41.50 Aligned_cols=16 Identities=13% Similarity=0.241 Sum_probs=10.4
Q ss_pred CHHHHHHHHHHHHHHH
Q 009998 175 SEEELDDLIRSLQYRI 190 (520)
Q Consensus 175 SveEID~rI~~LE~~I 190 (520)
..++++.+|..|+.+-
T Consensus 95 ~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 95 QIADLNARLNALEVQE 110 (420)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3456777777777665
No 67
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=94.13 E-value=12 Score=45.20 Aligned_cols=192 Identities=15% Similarity=0.256 Sum_probs=94.8
Q ss_pred HHHHHHHHhhHHHHHHHHhhhhhhcc----ccCCCCCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH-HH
Q 009998 142 SVMDDKRKEMEPLHQALGKLRTTNNA----RSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTR-EK 216 (520)
Q Consensus 142 ~~~~eK~kEik~Lq~~L~klre~~nA----rsk~~f~SveEID~rI~~LE~~IqhgSLsL~EEKklLkEIk~Lkk~R-k~ 216 (520)
+.+...+--++.||+.|.=||..+.- ..+.-|+.++.|+.+|..|+-.+-.-.+. .+-++|+.|...+ +.
T Consensus 1124 ~~ikK~ia~lnnlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~~~kL~dAyl~-----eitKqIsaLe~e~PKn 1198 (1439)
T PF12252_consen 1124 DSIKKAIANLNNLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVIHTKLYDAYLV-----EITKQISALEKEKPKN 1198 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHHHhhhhhHHHHHH-----HHHHHHHHHHhhCCCc
Confidence 44455555666677777655543322 33445777777777777776655444332 3566888888722 22
Q ss_pred HHHHHHHHHHHHhhhhhhhh-hHHHHHhhc--------cchhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 009998 217 VMANAAMRAKIQESMGKKED-IQDQVKLMG--------SDLDGVKKESQAVWAKI-----SHLEGKVKALDEEIEALQQE 282 (520)
Q Consensus 217 v~a~~~~~akiq~s~~~ke~-~~d~iK~l~--------~eLd~lKkeldalr~kI-----kel~~k~~al~~ei~~Lqee 282 (520)
+..+-.|...+-+.+...+- -+++||.-+ ..||.|+.+++.+..-+ +.++..+..+. +.....+
T Consensus 1199 ltdvK~missf~d~laeiE~LrnErIKkHGaSkePLDlSDlDkLk~~LQ~iNQ~LV~~LIn~iR~slnqme--~~tf~~q 1276 (1439)
T PF12252_consen 1199 LTDVKSMISSFNDRLAEIEFLRNERIKKHGASKEPLDLSDLDKLKGQLQKINQNLVKALINTIRVSLNQME--VKTFEEQ 1276 (1439)
T ss_pred hhhHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhhhh
Confidence 22333333444444444433 234555433 34666777766655432 11222221111 1111111
Q ss_pred HHHHH---HHHHHH------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHH
Q 009998 283 VNDVA---EKRDKA------FANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKK--DVQGLKELSNSE 340 (520)
Q Consensus 283 l~al~---~krdea------y~~i~~LRke~de~n~~f~~~r~~~~karela~~~--~v~el~~~~~~e 340 (520)
-.++. +..+++ ...-..++.++-..+..|-..+...-++-.|..+- =+..|++||..-
T Consensus 1277 ~~eiq~n~~ll~~L~~tlD~S~~a~Kqk~di~kl~~~lv~kQKAYP~M~QlQ~ksealI~qLRelC~~h 1345 (1439)
T PF12252_consen 1277 EKEIQQNLQLLDKLEKTLDDSDTAQKQKEDIVKLNDFLVEKQKAYPAMVQLQFKSEALIIQLRELCEAH 1345 (1439)
T ss_pred hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhhchHHHHHhhhhHHHHHHHHHHHHHh
Confidence 11111 111111 11223455555566666666666666666665543 478899999863
No 68
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.06 E-value=24 Score=45.04 Aligned_cols=66 Identities=20% Similarity=0.210 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHH
Q 009998 91 IRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQ 156 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~ 156 (520)
+......+.+.|..+.+.-..+..+-+..+.....+..+|..+..+...+.-.+........+|..
T Consensus 50 ~eq~~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~ 115 (1822)
T KOG4674|consen 50 HEQQLSELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRR 115 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHH
Confidence 334455555666666666665666666666777777777766666665555554444444444433
No 69
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.88 E-value=1.4 Score=40.30 Aligned_cols=47 Identities=26% Similarity=0.471 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH----HHHHHhccCHHHHHHHHHHHHHHHH
Q 009998 297 IKELRKQRDEGNAYFFQYRALLNE----AKAMSVKKDVQGLKELSNSEVEKYM 345 (520)
Q Consensus 297 i~~LRke~de~n~~f~~~r~~~~k----arela~~~~v~el~~~~~~eve~fm 345 (520)
+..|+.++.++...|--....+.+ +.+| +.|+.+|..+|..||+..|
T Consensus 70 ~~~L~~el~~l~~ry~t~LellGEK~E~veEL--~~Dv~DlK~myr~Qi~~lv 120 (120)
T PF12325_consen 70 VEELEQELEELQQRYQTLLELLGEKSEEVEEL--RADVQDLKEMYREQIDQLV 120 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH--HHHHHHHHHHHHHHHHHhC
Confidence 344444444444444444444433 3444 6899999999999998753
No 70
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=93.75 E-value=14 Score=41.46 Aligned_cols=72 Identities=8% Similarity=0.134 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 009998 255 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKA---FANIKELRKQRDEGNAYFFQYRALLNEAKAMSV 326 (520)
Q Consensus 255 ldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdea---y~~i~~LRke~de~n~~f~~~r~~~~karela~ 326 (520)
++.+...+..+..-.......+..+...++.+..+.+.+ -..+..|..+.+.....|...-..+.+.|.-++
T Consensus 303 L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a 377 (563)
T TIGR00634 303 LNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAA 377 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443322222223444444444444444433 335777888888888888887777777766654
No 71
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=93.69 E-value=15 Score=41.41 Aligned_cols=81 Identities=17% Similarity=0.311 Sum_probs=52.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 009998 246 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMS 325 (520)
Q Consensus 246 ~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~karela 325 (520)
.+|.++...++.+-..+..-.--|..++..+..+.+.+..|..++..+.++++.||+.--+.....-.+++.+...+.+.
T Consensus 354 ~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~m 433 (570)
T COG4477 354 KELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYM 433 (570)
T ss_pred HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444455567788888888888899999999999999998855554445555555554444443
Q ss_pred h
Q 009998 326 V 326 (520)
Q Consensus 326 ~ 326 (520)
-
T Consensus 434 e 434 (570)
T COG4477 434 E 434 (570)
T ss_pred H
Confidence 3
No 72
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=93.51 E-value=27 Score=43.74 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIR 123 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R 123 (520)
.+|...|+.+..+|..+...+..+.+.+..+..++
T Consensus 745 ~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~ 779 (1353)
T TIGR02680 745 AELDARLAAVDDELAELARELRALGARQRALADEL 779 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555444443
No 73
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.24 E-value=4.1 Score=42.75 Aligned_cols=54 Identities=22% Similarity=0.342 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 253 KESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 253 keldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de 306 (520)
.++..++..|..+...+.+.+.++..|+.++..+...+.++.+.+.+|..++.+
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e 262 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAE 262 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555555555555555555555555555555555555444
No 74
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=92.84 E-value=19 Score=40.30 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q 009998 117 RAKRVIRGDLAAQLRSLKTEGRQYK 141 (520)
Q Consensus 117 ~~~r~~R~eL~~qLkaLr~qqk~~r 141 (520)
...+.+-......|...+++...++
T Consensus 119 e~~~~q~~~~~~eL~~~k~EL~~lr 143 (522)
T PF05701_consen 119 ESAREQYASAVAELDSVKQELEKLR 143 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555554444
No 75
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=92.76 E-value=31 Score=42.39 Aligned_cols=27 Identities=15% Similarity=0.073 Sum_probs=11.4
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCcHHHH
Q 009998 175 SEEELDDLIRSLQYRIQHEIIPLSEEK 201 (520)
Q Consensus 175 SveEID~rI~~LE~~IqhgSLsL~EEK 201 (520)
+.+.+...-+.|+-+.....--..+++
T Consensus 537 ~~~kv~~~rk~le~~~~d~~~e~~~~~ 563 (1317)
T KOG0612|consen 537 SLEKVNSLRKQLEEAELDMRAESEDAG 563 (1317)
T ss_pred HHhhHHHHHHHHHHhhhhhhhhHHHHh
Confidence 344444444444444443333333333
No 76
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=92.73 E-value=21 Score=40.38 Aligned_cols=96 Identities=13% Similarity=0.186 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHhhhh
Q 009998 89 PKIRAKIDLTDREIQR-----RNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRT 163 (520)
Q Consensus 89 ~~lkakI~~a~keI~k-----l~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~klre 163 (520)
|.+...|..++..+.. .++.-..+...|......-..+...|..|.......+..+..-.+....++..+-.-+
T Consensus 78 ~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~- 156 (560)
T PF06160_consen 78 PEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHS- 156 (560)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 4455555555544332 2222222333334444444444444444444444444444444444444443332111
Q ss_pred hhccccCCCCCCHHHHHHHHHHHHHHHh
Q 009998 164 TNNARSGGICSSEEELDDLIRSLQYRIQ 191 (520)
Q Consensus 164 ~~nArsk~~f~SveEID~rI~~LE~~Iq 191 (520)
-.-..+.+.|+..+..||....
T Consensus 157 ------~~~G~a~~~Le~~L~~ie~~F~ 178 (560)
T PF06160_consen 157 ------FSYGPAIEELEKQLENIEEEFS 178 (560)
T ss_pred ------hhhchhHHHHHHHHHHHHHHHH
Confidence 1123455566666666555443
No 77
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.62 E-value=19 Score=42.46 Aligned_cols=93 Identities=13% Similarity=0.210 Sum_probs=57.0
Q ss_pred CCccccceeeecc-------------CCCCchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 71 EPRVIHNFYFIRH-------------RQYDDPK----IRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSL 133 (520)
Q Consensus 71 ~~~~~~~~yfVK~-------------~rpDd~~----lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaL 133 (520)
.++-...|||++. +.++.+. .++...+++..+++++..+..+...+...+..-.++.-+.+.|
T Consensus 611 ~~k~~lD~~f~kL~kele~~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL 690 (970)
T KOG0946|consen 611 NTKLALDFEFKKLFKELEGLIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEEL 690 (970)
T ss_pred CchhhhhHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3445577888875 2333322 4445566666667777666666666666666556666666666
Q ss_pred HHhhhhhhHHHHHHHHhhHHHHHHHHhhhh
Q 009998 134 KTEGRQYKSVMDDKRKEMEPLHQALGKLRT 163 (520)
Q Consensus 134 r~qqk~~r~~~~eK~kEik~Lq~~L~klre 163 (520)
.++...+.+......++++-|+..|+.++.
T Consensus 691 ~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~ 720 (970)
T KOG0946|consen 691 EEEVQDFISEHSQLKDQLDLLKNQLGIISS 720 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 666666666666666667777777765554
No 78
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=92.56 E-value=1.7 Score=41.17 Aligned_cols=62 Identities=18% Similarity=0.394 Sum_probs=30.2
Q ss_pred HHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 241 VKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEE--IEALQQEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 241 iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~e--i~~Lqeel~al~~krdeay~~i~~LRk 302 (520)
+..++.+|..|+.++..++..++.+...+..+... ...|...+..+..+...+-.++..|+.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555555555555555555555444443 234444455555555555555555543
No 79
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=92.47 E-value=41 Score=43.11 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=22.4
Q ss_pred ChHhHHHHHHHhHHHHhhhhhccCCCCCCCCCC
Q 009998 351 NKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEK 383 (520)
Q Consensus 351 ~~~FR~dY~k~~~~s~~~R~~~~DGR~~~pde~ 383 (520)
.+.++.+|..--.+.+..=.-..+=|+|=|++.
T Consensus 1489 k~e~~~e~e~~~~~~~~~~~E~lk~r~Rl~~ee 1521 (1822)
T KOG4674|consen 1489 KKELESEKEELKQRLTELAAENLKLRSRLAKEE 1521 (1822)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhhcchhH
Confidence 345556666655566666666778888889887
No 80
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=92.32 E-value=29 Score=41.04 Aligned_cols=38 Identities=16% Similarity=0.010 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCCCC-cHHHHHHHHHHHHHHHHHHHHHH
Q 009998 182 LIRSLQYRIQHEIIP-LSEEKQILREIKQLEGTREKVMA 219 (520)
Q Consensus 182 rI~~LE~~IqhgSLs-L~EEKklLkEIk~Lkk~Rk~v~a 219 (520)
+|..+=+..+|.+-. |.+++++-..-.-|.-.|++++-
T Consensus 215 ~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~s~ 253 (1265)
T KOG0976|consen 215 QKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRKTCSM 253 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhhHH
Confidence 344444444444432 34445554455555555555443
No 81
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.31 E-value=16 Score=37.91 Aligned_cols=71 Identities=11% Similarity=0.187 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHH-hhhh
Q 009998 93 AKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALG-KLRT 163 (520)
Q Consensus 93 akI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~-klre 163 (520)
.+|.+++.+...+...-..|.+++.....+++++..+++.+.++...+...|..-.+.|...++.|+ ++|.
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRA 109 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARA 109 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555444444445555555556666666666666666666666666666666666666554 4554
No 82
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=92.30 E-value=4.3 Score=41.00 Aligned_cols=57 Identities=16% Similarity=0.322 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 304 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~ 304 (520)
|.+++++++.|...-....+.+..|+.+|+.|..-+..+...|+.....+..|+.++
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey 90 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEY 90 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777776666777777777777777777766666666666665555433
No 83
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=92.10 E-value=28 Score=40.43 Aligned_cols=106 Identities=25% Similarity=0.306 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhccchhhHHH
Q 009998 174 SSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKK 253 (520)
Q Consensus 174 ~SveEID~rI~~LE~~IqhgSLsL~EEKklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~~~d~iK~l~~eLd~lKk 253 (520)
+--+|...||+.||..++.. ..|-.-+=+||++|++..-... ..+.+.+++.++.++-.-|.+ |.|
T Consensus 402 sl~~e~~QRva~lEkKvqa~---~kERDalr~e~kslk~ela~~l--------~~DeLaEkdE~I~~lm~EGEk---LSK 467 (961)
T KOG4673|consen 402 SLREEYHQRVATLEKKVQAL---TKERDALRREQKSLKKELAAAL--------LKDELAEKDEIINQLMAEGEK---LSK 467 (961)
T ss_pred chHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHHHHHHHHH---hHH
Confidence 34678999999999999864 3444555568888877643211 124455566555555433333 333
Q ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 254 ESQA-------VWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKA 293 (520)
Q Consensus 254 elda-------lr~kIkel~~k~~al~~ei~~Lqeel~al~~krdea 293 (520)
++-. ||+++++...-+.+..+.|..|+.+.+.+....+..
T Consensus 468 ~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~K 514 (961)
T KOG4673|consen 468 KQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDK 514 (961)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhH
Confidence 3333 444444444334455567788888888877666554
No 84
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.44 E-value=18 Score=36.98 Aligned_cols=70 Identities=24% Similarity=0.294 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHH
Q 009998 90 KIRAKIDLTDREIQRRNQARMQLMDELRA-------KRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALG 159 (520)
Q Consensus 90 ~lkakI~~a~keI~kl~q~R~~I~akl~~-------~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~ 159 (520)
.+...|+.+..+..++...+..+...+.. ....|..+..++..++.........+..--.++..|+..|.
T Consensus 58 ~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~ 134 (312)
T PF00038_consen 58 ELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELE 134 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHH
Confidence 35555555555555555555544444444 44555555555555555554444444444455555555554
No 85
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=91.24 E-value=47 Score=41.25 Aligned_cols=64 Identities=22% Similarity=0.249 Sum_probs=29.3
Q ss_pred HHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 240 QVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 240 ~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~d 305 (520)
+++.+.-++..+..++.... +.........|...+..|..+...+...-...-..+..++.++.
T Consensus 1016 q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1016 KLKELERELSELDKQILEAD--IKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 44444344444444444332 23333344444444444444444444444445555555555554
No 86
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.91 E-value=23 Score=37.18 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=13.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHH
Q 009998 86 YDDPKIRAKIDLTDREIQRRNQA 108 (520)
Q Consensus 86 pDd~~lkakI~~a~keI~kl~q~ 108 (520)
.|...+..++..++.++..+...
T Consensus 74 ld~~~~~~~l~~l~~~~~~l~a~ 96 (423)
T TIGR01843 74 LDATDVEADAAELESQVLRLEAE 96 (423)
T ss_pred EccchhhhHHHHHHHHHHHHHHH
Confidence 35556666666666666555443
No 87
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=90.81 E-value=24 Score=37.22 Aligned_cols=86 Identities=20% Similarity=0.273 Sum_probs=62.4
Q ss_pred hHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 009998 237 IQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRA 316 (520)
Q Consensus 237 ~~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~ 316 (520)
+.+.+-....+...-..+|..+.++|-.+..+.+.+-.+-..|+..+.+..+..+.+-..+..|+..+.+...-|...+.
T Consensus 218 LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQE 297 (306)
T PF04849_consen 218 LSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQE 297 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555667777777777777777777777777788888888888888888888888888888887877777
Q ss_pred HHHHHH
Q 009998 317 LLNEAK 322 (520)
Q Consensus 317 ~~~kar 322 (520)
.++..|
T Consensus 298 Elk~lR 303 (306)
T PF04849_consen 298 ELKTLR 303 (306)
T ss_pred HHHHhh
Confidence 776654
No 88
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=90.76 E-value=24 Score=37.09 Aligned_cols=60 Identities=12% Similarity=0.241 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 307 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~ 307 (520)
+..+...-..++.+|+.-.++|+.+++-+..-++=+.......+.....+..|-++-...
T Consensus 204 ~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~ 263 (309)
T PF09728_consen 204 VQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTW 263 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555444445555555555555555554444333
No 89
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=90.25 E-value=4.6 Score=33.48 Aligned_cols=63 Identities=13% Similarity=0.206 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 009998 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQ 313 (520)
Q Consensus 251 lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~ 313 (520)
|..++..++..++.+..++.........|..+.+..-.....+|..+..|+.+.+..-.++-.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777777777777777778888888888888888888888888888776665433
No 90
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=89.90 E-value=10 Score=39.95 Aligned_cols=56 Identities=18% Similarity=0.241 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 009998 254 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 309 (520)
Q Consensus 254 eldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~ 309 (520)
+++.++.+|......+.....++..++.++..+...+....+.+.+++.++.+.-.
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555555555555555555555555555554433
No 91
>PF13166 AAA_13: AAA domain
Probab=89.30 E-value=46 Score=38.10 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=21.6
Q ss_pred CCchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 86 YDDPKIRAKIDL-TDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSL 133 (520)
Q Consensus 86 pDd~~lkakI~~-a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaL 133 (520)
|.++.++.+|.. .+....... ..|...+.........+...+..+
T Consensus 265 ~l~~~~~~~l~~~f~~~~~~~~---~~l~~~~~~~~~~~~~~~~~l~~~ 310 (712)
T PF13166_consen 265 PLSEERKERLEKYFDEEYEKLI---EELEKAIKKLEKAIENIIEQLESI 310 (712)
T ss_pred CCcHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566777777775 455443322 223333444444444444444333
No 92
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=89.20 E-value=38 Score=37.03 Aligned_cols=33 Identities=12% Similarity=0.215 Sum_probs=23.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 85 QYDDPKIRAKIDLTDREIQRRNQARMQLMDELR 117 (520)
Q Consensus 85 rpDd~~lkakI~~a~keI~kl~q~R~~I~akl~ 117 (520)
..|+..+.+.+..++..+..+...+..+.+.++
T Consensus 89 ~ld~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~ 121 (457)
T TIGR01000 89 VYDNGNEENQKQLLEQQLDNLKDQKKSLDTLKQ 121 (457)
T ss_pred EECchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888888887777766655555443
No 93
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=89.12 E-value=9.4 Score=40.22 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=11.9
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhHHHHHHH
Q 009998 129 QLRSLKTEGRQYKSVMDDKRKEMEPLHQAL 158 (520)
Q Consensus 129 qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L 158 (520)
+|+.++++.......+..+++++..++..+
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l 234 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEEL 234 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344333333334444444444444333
No 94
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=88.98 E-value=43 Score=37.43 Aligned_cols=128 Identities=23% Similarity=0.325 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhhhhhHH--------------H
Q 009998 89 PKIRAKIDLTDREIQRRNQARMQLMDELRA----------KRVIRGDLAAQLRSLKTEGRQYKSV--------------M 144 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~akl~~----------~r~~R~eL~~qLkaLr~qqk~~r~~--------------~ 144 (520)
..++..|..-+.+|+.|+..++.+...+.. ..++|-+|..+|+-+..+...++.. +
T Consensus 333 ~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~sl 412 (622)
T COG5185 333 EKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSL 412 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHH
Confidence 568888888889999999888888887754 4588888888887776666554433 3
Q ss_pred HHHHHhhHHHHHHHHhhh----hhhcc------------cc----CCCCCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 009998 145 DDKRKEMEPLHQALGKLR----TTNNA------------RS----GGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQIL 204 (520)
Q Consensus 145 ~eK~kEik~Lq~~L~klr----e~~nA------------rs----k~~f~SveEID~rI~~LE~~IqhgSLsL~EEKklL 204 (520)
..+..+++.|...|+..+ .-+|- .+ .....++.+++..|..+=+..+..||+|.|-..-+
T Consensus 413 ek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee~i~~~ 492 (622)
T COG5185 413 EKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKNL 492 (622)
T ss_pred HHHHHHHHHHHHHhcccHHHHhhcCCCCceeeccccCCccccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHHHhhhH
Confidence 334445555555554222 11111 00 01235688999999999999999999999886666
Q ss_pred H-HHHHHHHHHHH
Q 009998 205 R-EIKQLEGTREK 216 (520)
Q Consensus 205 k-EIk~Lkk~Rk~ 216 (520)
+ -|+.|......
T Consensus 493 ~~~i~El~~~l~~ 505 (622)
T COG5185 493 KHDINELTQILEK 505 (622)
T ss_pred HhHHHHHHHHHHH
Confidence 5 34555554443
No 95
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.93 E-value=3.5 Score=40.05 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 249 DGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 249 d~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de 306 (520)
..+..++..++.++..+...+.....-+..|++++.++.-.-+-+-+++..|..+-++
T Consensus 119 ~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~ 176 (194)
T PF08614_consen 119 AELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRE 176 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333334444444443333333333333333333
No 96
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=88.90 E-value=28 Score=36.05 Aligned_cols=82 Identities=13% Similarity=0.232 Sum_probs=45.9
Q ss_pred HHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 009998 238 QDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRAL 317 (520)
Q Consensus 238 ~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~ 317 (520)
+..++....++..++..++.+.+.-..|..+++.-+.++.-.++.+..+...|=...++-..|-.++.+.|..|...=|.
T Consensus 168 ~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRN 247 (267)
T PF10234_consen 168 KEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRN 247 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444445555555555555555555555555556666666666666666666666666666666666655444444
Q ss_pred HH
Q 009998 318 LN 319 (520)
Q Consensus 318 ~~ 319 (520)
+.
T Consensus 248 l~ 249 (267)
T PF10234_consen 248 LD 249 (267)
T ss_pred HH
Confidence 33
No 97
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=88.65 E-value=6.3 Score=39.91 Aligned_cols=88 Identities=17% Similarity=0.203 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCH
Q 009998 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDV 330 (520)
Q Consensus 251 lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~karela~~~~v 330 (520)
+|..+..++.++.++.+...++-+++..|+.++.++++....+-.....|-..++..-..+|..+..+....+-
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~------ 206 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG------ 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc------
Confidence 34444444444444444444555555555555555555555555555555555555555666655555443222
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 009998 331 QGLKELSNSEVEKYMTLWN 349 (520)
Q Consensus 331 ~el~~~~~~eve~fm~~wn 349 (520)
+-..+-+.||-+|.
T Consensus 207 -----~El~e~~~i~dl~~ 220 (290)
T COG4026 207 -----VELPEEELISDLVK 220 (290)
T ss_pred -----ccchHHHHHHHHHH
Confidence 12346678999995
No 98
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=88.61 E-value=11 Score=33.88 Aligned_cols=70 Identities=13% Similarity=0.172 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 009998 250 GVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLN 319 (520)
Q Consensus 250 ~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~ 319 (520)
.|...+...+..+.++-..-+.+..-++.|+.+..+++....++-.+|.+++..++..--.+.+....+.
T Consensus 20 ~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~ 89 (107)
T PF09304_consen 20 SLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLL 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555556777778888888888888888888888888888764444434443333
No 99
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=88.49 E-value=37 Score=36.07 Aligned_cols=37 Identities=16% Similarity=0.090 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 98 TDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLK 134 (520)
Q Consensus 98 a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr 134 (520)
+..++..+...|++...-...++.+.+.+.....++.
T Consensus 14 L~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~ 50 (319)
T PF09789_consen 14 LSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELI 50 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566777777777777777777777666666666555
No 100
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.41 E-value=5.2 Score=38.86 Aligned_cols=6 Identities=50% Similarity=1.005 Sum_probs=2.8
Q ss_pred HHHHHH
Q 009998 341 VEKYMT 346 (520)
Q Consensus 341 ve~fm~ 346 (520)
|+|||.
T Consensus 178 v~Rwm~ 183 (194)
T PF08614_consen 178 VERWMQ 183 (194)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 101
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.19 E-value=35 Score=35.39 Aligned_cols=65 Identities=15% Similarity=0.261 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHH
Q 009998 95 IDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALG 159 (520)
Q Consensus 95 I~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~ 159 (520)
|...+..|..+...-..|-++|..+-..-.++..+++.+..+....+..+..-..+|+.+.+.|.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777666777777666666666666666666666666666555566666655554
No 102
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.07 E-value=23 Score=33.15 Aligned_cols=34 Identities=15% Similarity=0.252 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHH
Q 009998 121 VIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPL 154 (520)
Q Consensus 121 ~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~L 154 (520)
.+.....+....+.++.+.+......+=.+|.+|
T Consensus 7 ~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL 40 (143)
T PF12718_consen 7 LEADNAQDRAEELEAKVKQLEQENEQKEQEITSL 40 (143)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 103
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=88.04 E-value=66 Score=38.41 Aligned_cols=41 Identities=22% Similarity=0.241 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHH
Q 009998 176 EEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKV 217 (520)
Q Consensus 176 veEID~rI~~LE~~IqhgSLsL~EEKklLkEIk~Lkk~Rk~v 217 (520)
..+|..+...++..+++- +.......+=..++.|...+..+
T Consensus 602 ~~~l~~~~~~l~~~~~~~-~~~~~~~e~~~~~~~l~~~~~~l 642 (908)
T COG0419 602 LKELEERLSQLEELLQSL-ELSEAENELEEAEEELESELEKL 642 (908)
T ss_pred HHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777 44444444444445555444443
No 104
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=87.94 E-value=7 Score=34.14 Aligned_cols=71 Identities=20% Similarity=0.296 Sum_probs=46.9
Q ss_pred hHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 237 IQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDE---EIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 307 (520)
Q Consensus 237 ~~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~---ei~~Lqeel~al~~krdeay~~i~~LRke~de~ 307 (520)
..+++-.++.+.-.+..+++.++++.+.+.+++..+.. +...|..+...+..+...+-..+..+..+++..
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555666777777777777777777765554 466777777777777777666666666665543
No 105
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.85 E-value=70 Score=38.49 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=11.0
Q ss_pred CCcchhhhhccccccccCCCCCCC
Q 009998 8 SPVESVAEVHNSLAQENGKLDKGP 31 (520)
Q Consensus 8 ~~~~~~~~~~~~~~~en~~~~~~~ 31 (520)
+|+-.+++|..+-+.-+|-...-|
T Consensus 152 ~PaSk~~e~~p~sl~ps~aAs~~~ 175 (1243)
T KOG0971|consen 152 APASKGVEGAPSSLGPSGAASVTP 175 (1243)
T ss_pred CCcccccCCCccccCCCCcccccC
Confidence 344555544444444445444433
No 106
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=87.58 E-value=70 Score=38.19 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 106 NQARMQLMDELRAKRVIRGDLAAQLR 131 (520)
Q Consensus 106 ~q~R~~I~akl~~~r~~R~eL~~qLk 131 (520)
.+....+...+...+.....+..++.
T Consensus 170 e~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 170 EKLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555554
No 107
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=87.21 E-value=33 Score=34.00 Aligned_cols=67 Identities=25% Similarity=0.364 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 009998 254 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 320 (520)
Q Consensus 254 eldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~k 320 (520)
+-..+-++-..++.....+-.++..|+++...+...++.+-.....|..+...+....|.+-..+..
T Consensus 82 ~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~ 148 (193)
T PF14662_consen 82 ENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQ 148 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3333333444444444455555555555555555555555555555555555444444444444443
No 108
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=87.15 E-value=51 Score=36.09 Aligned_cols=75 Identities=13% Similarity=0.213 Sum_probs=37.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 009998 246 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 320 (520)
Q Consensus 246 ~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~k 320 (520)
.+|...-...+.....|.....++....-.|..-.+.+.+=-.+-+.+-....-|-.+.-....+|..|++....
T Consensus 217 ~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ~y~~lr~q 291 (499)
T COG4372 217 EELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQ 291 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555555444444444433333333333333444444455555556666666666655444
No 109
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=86.81 E-value=68 Score=37.25 Aligned_cols=67 Identities=16% Similarity=0.103 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHhhhhhhHHHHHHHHhhHHHHH
Q 009998 92 RAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLA---------------AQLRSLKTEGRQYKSVMDDKRKEMEPLHQ 156 (520)
Q Consensus 92 kakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~---------------~qLkaLr~qqk~~r~~~~eK~kEik~Lq~ 156 (520)
..+.+.+..-+.=+......+..++.....+...+. .+|..+..+....+..+.......+.++.
T Consensus 186 ~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~ 265 (754)
T TIGR01005 186 AAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKK 265 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555554433333332 45555555555554444444444444444
Q ss_pred HH
Q 009998 157 AL 158 (520)
Q Consensus 157 ~L 158 (520)
.+
T Consensus 266 ~l 267 (754)
T TIGR01005 266 AL 267 (754)
T ss_pred HH
Confidence 44
No 110
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=86.78 E-value=66 Score=37.02 Aligned_cols=12 Identities=33% Similarity=0.631 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 009998 202 QILREIKQLEGT 213 (520)
Q Consensus 202 klLkEIk~Lkk~ 213 (520)
++..+|.+++.+
T Consensus 296 ~L~~di~~~~~S 307 (629)
T KOG0963|consen 296 QLSNDIERLEAS 307 (629)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 111
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=86.68 E-value=12 Score=35.35 Aligned_cols=92 Identities=26% Similarity=0.384 Sum_probs=53.6
Q ss_pred cceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHhhHH
Q 009998 76 HNFYFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEG--RQYKSVMDDKRKEMEP 153 (520)
Q Consensus 76 ~~~yfVK~~rpDd~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qq--k~~r~~~~eK~kEik~ 153 (520)
..+||+....++++. ...+..++.+|..+ .+++..++...+.|.++|..|.+.. ..+...+.....++..
T Consensus 56 qkiY~~~Q~~~~~~s-~eel~~ld~ei~~L-------~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~ 127 (169)
T PF07106_consen 56 QKIYFANQDELEVPS-PEELAELDAEIKEL-------REELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEE 127 (169)
T ss_pred eEEEeeCccccCCCC-chhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 358888766554321 22344444444333 3445556666667777777777765 3456666666677777
Q ss_pred HHHHHHhhhhhhccccCCCCCCHHHHHH
Q 009998 154 LHQALGKLRTTNNARSGGICSSEEELDD 181 (520)
Q Consensus 154 Lq~~L~klre~~nArsk~~f~SveEID~ 181 (520)
|.+.|..++.. ...-|++++..
T Consensus 128 l~~kL~~l~~~------~~~vs~ee~~~ 149 (169)
T PF07106_consen 128 LEEKLEKLRSG------SKPVSPEEKEK 149 (169)
T ss_pred HHHHHHHHHhC------CCCCCHHHHHH
Confidence 88777777642 12356666653
No 112
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=86.18 E-value=70 Score=37.61 Aligned_cols=64 Identities=16% Similarity=0.184 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 009998 250 GVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQ 313 (520)
Q Consensus 250 ~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~ 313 (520)
.++.++..+..++..+......-++.+..|..++..+...-.+....++..++++-.....+++
T Consensus 395 ~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAq 458 (717)
T PF09730_consen 395 RLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQ 458 (717)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554444456778888888888888888777777777776555444333
No 113
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=85.91 E-value=30 Score=32.34 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=12.2
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q 009998 174 SSEEELDDLIRSLQYRIQH 192 (520)
Q Consensus 174 ~SveEID~rI~~LE~~Iqh 192 (520)
+..+-+.++|..||..+..
T Consensus 73 ~~~E~l~rriq~LEeele~ 91 (143)
T PF12718_consen 73 SNAEQLNRRIQLLEEELEE 91 (143)
T ss_pred HhHHHHHhhHHHHHHHHHH
Confidence 3455677777777766543
No 114
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=85.90 E-value=59 Score=35.63 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=7.1
Q ss_pred CCchHHHHHHHHH
Q 009998 86 YDDPKIRAKIDLT 98 (520)
Q Consensus 86 pDd~~lkakI~~a 98 (520)
-.||.+-+.|..+
T Consensus 130 ~~dP~~Aa~i~n~ 142 (498)
T TIGR03007 130 DKDPELAKDVVQT 142 (498)
T ss_pred CCCHHHHHHHHHH
Confidence 3446666665554
No 115
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.87 E-value=80 Score=37.12 Aligned_cols=47 Identities=15% Similarity=0.293 Sum_probs=24.5
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009998 93 AKIDLTDRE-IQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQ 139 (520)
Q Consensus 93 akI~~a~ke-I~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~ 139 (520)
.-+..+..+ |.+....|.+|...+..++........+|..+.++...
T Consensus 543 ~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~ 590 (717)
T PF10168_consen 543 QATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKS 590 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444 45555566666666655555555555555544444333
No 116
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=85.86 E-value=14 Score=36.01 Aligned_cols=84 Identities=21% Similarity=0.323 Sum_probs=39.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----------HHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFF-----------QYRA 316 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~-----------~~r~ 316 (520)
++.++++++.++.++.++...+.... ..+ .-...|..+.+.+..|+.+...+...+- +.+.
T Consensus 71 ~~~l~~~~~~~~~~i~~l~~~i~~~~-------~~r-~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~ 142 (188)
T PF03962_consen 71 LEKLQKEIEELEKKIEELEEKIEEAK-------KGR-EESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKE 142 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------hcc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 44444444444444444444443332 222 1125555555555555555555544433 3334
Q ss_pred HHHHHHHHHhc--cCHHHHHHHHHH
Q 009998 317 LLNEAKAMSVK--KDVQGLKELSNS 339 (520)
Q Consensus 317 ~~~karela~~--~~v~el~~~~~~ 339 (520)
....+++.+.+ -|+--|+.+|.+
T Consensus 143 ~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 143 EIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44444444443 355555555554
No 117
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=85.85 E-value=21 Score=36.12 Aligned_cols=93 Identities=16% Similarity=0.298 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 214 REKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKA 293 (520)
Q Consensus 214 Rk~v~a~~~~~akiq~s~~~ke~~~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdea 293 (520)
|.++..+......|.+.++.-+....-|.....+.+.|-.|....-..|..+..-+..+...|..+..+.+........+
T Consensus 7 r~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~ 86 (230)
T PF10146_consen 7 RNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRL 86 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344433343444433333322222223333334444444444444444444334444444444444444444444444
Q ss_pred HHHHHHHHHHHHH
Q 009998 294 FANIKELRKQRDE 306 (520)
Q Consensus 294 y~~i~~LRke~de 306 (520)
|....-|+.+.|+
T Consensus 87 ~eey~~Lk~~in~ 99 (230)
T PF10146_consen 87 YEEYKPLKDEINE 99 (230)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 118
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=85.78 E-value=66 Score=36.08 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 009998 279 LQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYR 315 (520)
Q Consensus 279 Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r 315 (520)
|++.++.++..+.++...+..|-.++.+.++.|-..+
T Consensus 485 Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~k 521 (622)
T COG5185 485 LEEDIKNLKHDINELTQILEKLELELSEANSKFELSK 521 (622)
T ss_pred HHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555444433
No 119
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=85.67 E-value=11 Score=37.93 Aligned_cols=62 Identities=15% Similarity=0.357 Sum_probs=41.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 246 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 307 (520)
Q Consensus 246 ~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~ 307 (520)
++.+.++.++..++.++.....+++..+++...|.++.+.+..+-|.+.++-+.|+++.+-+
T Consensus 151 ~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 151 EENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcc
Confidence 34555566666666666666666667777777777777777777777777777777776543
No 120
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=85.11 E-value=45 Score=33.57 Aligned_cols=91 Identities=15% Similarity=0.217 Sum_probs=65.9
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHH
Q 009998 243 LMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA-----YFFQYRAL 317 (520)
Q Consensus 243 ~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~-----~f~~~r~~ 317 (520)
.+..++..+.++++.+...+..+...+.....++..|+.+++.+...+.++.--+...-+.+...-. ..-+....
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~R 132 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQER 132 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHH
Confidence 3444566678888888888888888888888888888888888888888887766666666655322 23345666
Q ss_pred HHHHHHHHhccCHHHH
Q 009998 318 LNEAKAMSVKKDVQGL 333 (520)
Q Consensus 318 ~~karela~~~~v~el 333 (520)
+...+.+....++.-.
T Consensus 133 l~~L~~~l~~~dv~~~ 148 (251)
T PF11932_consen 133 LARLRAMLDDADVSLA 148 (251)
T ss_pred HHHHHHhhhccCCCHH
Confidence 6777888777777654
No 121
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=85.09 E-value=17 Score=37.63 Aligned_cols=64 Identities=23% Similarity=0.297 Sum_probs=48.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 009998 246 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 309 (520)
Q Consensus 246 ~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~ 309 (520)
..|..-+.+++-.+..+..|..---+.-+++..|..++..+|+.-=..|-++.-|..+++..+.
T Consensus 197 ~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~~~~ 260 (267)
T PF10234_consen 197 AKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEEYNR 260 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344445555555555555555556777899999999999999999999999999999987654
No 122
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=85.06 E-value=0.27 Score=55.85 Aligned_cols=68 Identities=18% Similarity=0.339 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHH
Q 009998 246 SDLDGVKKESQAVWAKISHLEGKVKAL--------DEEIEALQQEVNDVAEKRDKAFANI-KELRKQRDEGNAYFFQ 313 (520)
Q Consensus 246 ~eLd~lKkeldalr~kIkel~~k~~al--------~~ei~~Lqeel~al~~krdeay~~i-~~LRke~de~n~~f~~ 313 (520)
..++.+..++..|+..+..-.+..... ..-|+.+..|++-|...+......+ ..+|.++.+.|+..|-
T Consensus 228 ~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~ 304 (619)
T PF03999_consen 228 EKLQELREKIEELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHY 304 (619)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC
Confidence 346677777777777766544333311 2347778888888887776655554 6777777777764443
No 123
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.00 E-value=11 Score=37.57 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 271 ALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 271 al~~ei~~Lqeel~al~~krdeay~~i~~LRke~d 305 (520)
..+..+..|..+...+..+-..+-.++..|+.+.+
T Consensus 129 ~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 129 QSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444433
No 124
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=84.83 E-value=86 Score=36.59 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 009998 120 RVIRGDLAAQLRSLKTEGR 138 (520)
Q Consensus 120 r~~R~eL~~qLkaLr~qqk 138 (520)
..++......+-.+..+..
T Consensus 134 ~~~~~s~~~~~~~~~~~~~ 152 (670)
T KOG0239|consen 134 EEDNPSIFVSLLELAQENR 152 (670)
T ss_pred hcccccHHHHHHHHHhhhc
Confidence 3444455555555554443
No 125
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=84.76 E-value=11 Score=43.59 Aligned_cols=45 Identities=24% Similarity=0.250 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHHHHHHHHHH
Q 009998 175 SEEELDDLIRSLQYRIQHEIIPLSEE-----KQILREIKQLEGTREKVMA 219 (520)
Q Consensus 175 SveEID~rI~~LE~~IqhgSLsL~EE-----KklLkEIk~Lkk~Rk~v~a 219 (520)
+.+++|..+..|++.+-.-.-.++|+ .+++++|..+++-...+.+
T Consensus 33 ~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s 82 (660)
T KOG4302|consen 33 SETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCS 82 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555544443333333333 4566666666665555444
No 126
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=84.56 E-value=11 Score=31.51 Aligned_cols=65 Identities=14% Similarity=0.280 Sum_probs=40.5
Q ss_pred HHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 240 QVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 304 (520)
Q Consensus 240 ~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~ 304 (520)
.++..+..|..|..+...+..+--..+..++.++..+..+...+..+....+.+-..+..|+...
T Consensus 6 ~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 6 KLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444666666666666655555666666666666666666677777777666666666544
No 127
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=83.81 E-value=0.33 Score=55.90 Aligned_cols=59 Identities=22% Similarity=0.347 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de 306 (520)
|..+++++..+..++.+...+...+.-++..|.+++.++...++.+...+..|+...++
T Consensus 365 le~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~ee 423 (713)
T PF05622_consen 365 LEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETNEE 423 (713)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555554444444555555566666666666666655555555554433
No 128
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=83.63 E-value=1.2e+02 Score=37.42 Aligned_cols=100 Identities=17% Similarity=0.242 Sum_probs=53.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHhhhhh
Q 009998 85 QYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTT 164 (520)
Q Consensus 85 rpDd~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~klre~ 164 (520)
.|+...++.+|+.+.+. +... ...+...++ .--...++.+...+....|+..+..-=+++..++..|..++..
T Consensus 22 ~p~~~~iq~~l~~~~~~--~~~~-~k~~~~~l~----~tl~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~ 94 (1109)
T PRK10929 22 APDEKQITQELEQAKAA--KTPA-QAEIVEALQ----SALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDE 94 (1109)
T ss_pred CCCHHHHHHHHHHhhcC--CChh-hHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc
Confidence 47778899999987662 2211 112222222 2223344444444455555555555555666666666543321
Q ss_pred hccccCCCCCCHHHHHHHHHHHHHHHhcC
Q 009998 165 NNARSGGICSSEEELDDLIRSLQYRIQHE 193 (520)
Q Consensus 165 ~nArsk~~f~SveEID~rI~~LE~~Iqhg 193 (520)
......-.|..+|+.++.....+++.-
T Consensus 95 --~~~~~~~~s~~~Leq~l~~~~~~L~~~ 121 (1109)
T PRK10929 95 --PRSVPPNMSTDALEQEILQVSSQLLEK 121 (1109)
T ss_pred --cccccccCCHHHHHHHHHHHHHHHHHH
Confidence 111123456788888888777774433
No 129
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=83.60 E-value=48 Score=32.71 Aligned_cols=29 Identities=10% Similarity=0.344 Sum_probs=18.4
Q ss_pred Hhhhh-hhHHHHHHHHhhHHHHHHHHhhhh
Q 009998 135 TEGRQ-YKSVMDDKRKEMEPLHQALGKLRT 163 (520)
Q Consensus 135 ~qqk~-~r~~~~eK~kEik~Lq~~L~klre 163 (520)
.+.+. |+..-..-+.-|++|++.+..++.
T Consensus 12 ~~iK~YYndIT~~NL~lIksLKeei~emkk 41 (201)
T PF13851_consen 12 QEIKNYYNDITLNNLELIKSLKEEIAEMKK 41 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 345555666788888888776663
No 130
>PRK11281 hypothetical protein; Provisional
Probab=83.60 E-value=1.2e+02 Score=37.42 Aligned_cols=29 Identities=17% Similarity=0.090 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCcHHH
Q 009998 172 ICSSEEELDDLIRSLQYRIQHEIIPLSEE 200 (520)
Q Consensus 172 ~f~SveEID~rI~~LE~~IqhgSLsL~EE 200 (520)
.-.|..++++++.+++..++.-.-.|.+.
T Consensus 119 ~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~ 147 (1113)
T PRK11281 119 STLSLRQLESRLAQTLDQLQNAQNDLAEY 147 (1113)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999998888776655445444
No 131
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=83.52 E-value=63 Score=33.98 Aligned_cols=60 Identities=25% Similarity=0.477 Sum_probs=41.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 247 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 247 eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de 306 (520)
+|..+|.++..+...|...+..+..++.++..+..++.++..++.++-..|.++...+.+
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~ 269 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREE 269 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666777777777777777777777777777777766553
No 132
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=83.24 E-value=49 Score=32.59 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=16.2
Q ss_pred hhHHHHHHHHhhHHHHHHHHhhhh
Q 009998 140 YKSVMDDKRKEMEPLHQALGKLRT 163 (520)
Q Consensus 140 ~r~~~~eK~kEik~Lq~~L~klre 163 (520)
+=..+...-+++..|+..|++..+
T Consensus 59 Lpqll~~h~eEvr~Lr~~LR~~q~ 82 (194)
T PF15619_consen 59 LPQLLQRHNEEVRVLRERLRKSQE 82 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667788888887776554
No 133
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.15 E-value=92 Score=35.60 Aligned_cols=45 Identities=13% Similarity=0.282 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 009998 268 KVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFF 312 (520)
Q Consensus 268 k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~ 312 (520)
.+.....+.-.|++-+..+...+.+....+..+.-+.....+.|-
T Consensus 433 ~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~ 477 (581)
T KOG0995|consen 433 ELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYE 477 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555555555555555444444333
No 134
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=82.58 E-value=1.4e+02 Score=37.20 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=11.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 009998 88 DPKIRAKIDLTDREIQRRNQAR 109 (520)
Q Consensus 88 d~~lkakI~~a~keI~kl~q~R 109 (520)
|..|..++++++.-+.-+.+.+
T Consensus 1421 ~~~l~~~~ae~eq~~~~v~ea~ 1442 (1758)
T KOG0994|consen 1421 DTQLRSKLAEAEQTLSMVREAK 1442 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554444443
No 135
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=82.35 E-value=12 Score=32.72 Aligned_cols=62 Identities=27% Similarity=0.505 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 201 KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEAL 279 (520)
Q Consensus 201 KklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~~~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~L 279 (520)
+.++.++..|+..|..++.-.+ . .+.-+.+.+.++.+...++.+|..+...+..+..++..+
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I~----------~-------~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEIG----------K-------LKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------H-------HCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----------H-------HhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999887664222 1 111124456666666666666666666665555555443
No 136
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=82.05 E-value=1.3e+02 Score=36.74 Aligned_cols=86 Identities=17% Similarity=0.287 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHhcc--CHHHHHH---HH
Q 009998 264 HLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG-NAYFFQYRALLNEAKAMSVKK--DVQGLKE---LS 337 (520)
Q Consensus 264 el~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~-n~~f~~~r~~~~karela~~~--~v~el~~---~~ 337 (520)
....++......+..++.+++.+....+.+-..|.++ .++..+ ...|.....++..++..+... +..-|.. .-
T Consensus 804 d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~ 882 (1141)
T KOG0018|consen 804 DTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEKKNKSKFEKKEDEINEVKKILRRLVKELTKLDKEITSI 882 (1141)
T ss_pred cHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4444444444444444444444444444444444444 333322 335666666666665554431 2222221 22
Q ss_pred HHHHHHHHHHHhC
Q 009998 338 NSEVEKYMTLWNN 350 (520)
Q Consensus 338 ~~eve~fm~~wn~ 350 (520)
-+..|++-+-|-+
T Consensus 883 es~ie~~~~er~~ 895 (1141)
T KOG0018|consen 883 ESKIERKESERHN 895 (1141)
T ss_pred hhHHHHHHHHHHH
Confidence 4577788777754
No 137
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=82.00 E-value=35 Score=32.50 Aligned_cols=35 Identities=14% Similarity=0.198 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 009998 277 EALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYF 311 (520)
Q Consensus 277 ~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f 311 (520)
..+................++..+...+......|
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~ 146 (191)
T PF04156_consen 112 EKLKEDLQELRELLKSVEERLDSLDESIKELEKEI 146 (191)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444444333333
No 138
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=81.86 E-value=12 Score=37.68 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 009998 201 KQILREIKQLEGTREK 216 (520)
Q Consensus 201 KklLkEIk~Lkk~Rk~ 216 (520)
+++++++.+|++.-..
T Consensus 130 ~~~~~~~~~lk~~~~~ 145 (216)
T KOG1962|consen 130 EKAMKENEALKKQLEN 145 (216)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 6677777777666443
No 139
>PRK10869 recombination and repair protein; Provisional
Probab=81.79 E-value=99 Score=35.04 Aligned_cols=46 Identities=9% Similarity=-0.057 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHhhhh
Q 009998 118 AKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRT 163 (520)
Q Consensus 118 ~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~klre 163 (520)
..+..-+.+..+++.+..+...+........++++-|+-.+.+|..
T Consensus 154 ~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~ 199 (553)
T PRK10869 154 SLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNE 199 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666666666666666666666666667666666554
No 140
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=81.78 E-value=63 Score=32.74 Aligned_cols=19 Identities=21% Similarity=0.641 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009998 201 KQILREIKQLEGTREKVMA 219 (520)
Q Consensus 201 KklLkEIk~Lkk~Rk~v~a 219 (520)
+.+|.++..|+..|..+..
T Consensus 147 ~~ll~~l~~l~~eR~~~~~ 165 (296)
T PF13949_consen 147 RELLNKLEELKKEREELLE 165 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5788888899998888665
No 141
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=81.41 E-value=17 Score=35.44 Aligned_cols=68 Identities=19% Similarity=0.312 Sum_probs=54.2
Q ss_pred eeeeccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhhhhhHHHH
Q 009998 78 FYFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKR------VIRGDLAAQLRSLKTEGRQYKSVMD 145 (520)
Q Consensus 78 ~yfVK~~rpDd~~lkakI~~a~keI~kl~q~R~~I~akl~~~r------~~R~eL~~qLkaLr~qqk~~r~~~~ 145 (520)
-||--+|.-.--.++.+++.++++|..+......+...+...+ .+|..+..+|..|..+...++..+.
T Consensus 54 n~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 54 NYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred eEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666688999999999999999999988888887764 6788888888888888877776665
No 142
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=80.00 E-value=22 Score=29.73 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 268 KVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 304 (520)
Q Consensus 268 k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~ 304 (520)
+..++..+...|..+...+...++..+.+|+.|=..+
T Consensus 33 ~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 33 KNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444445555555555555555555555554443
No 143
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=79.34 E-value=57 Score=30.75 Aligned_cols=85 Identities=22% Similarity=0.263 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCHHHHHHH
Q 009998 257 AVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKEL 336 (520)
Q Consensus 257 alr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~karela~~~~v~el~~~ 336 (520)
.-++.|..+..++..+..+++.|..+++.+...++.+-..+.....+..++-..-..+...+..+.+- ...+.+-
T Consensus 49 n~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e-----k~q~~e~ 123 (140)
T PF10473_consen 49 NSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE-----KVQLKEE 123 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----HHHHHHH
Confidence 33444444555555566666666666666666666666666666666666555444445444443332 4445555
Q ss_pred HHHHHHHHHH
Q 009998 337 SNSEVEKYMT 346 (520)
Q Consensus 337 ~~~eve~fm~ 346 (520)
+.+.|+....
T Consensus 124 ~~~~ve~L~~ 133 (140)
T PF10473_consen 124 SKSAVEMLQK 133 (140)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 144
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=79.19 E-value=1.6e+02 Score=35.89 Aligned_cols=214 Identities=16% Similarity=0.203 Sum_probs=100.7
Q ss_pred ceeeeccCCCCchHHHHHHHHHHHHHHHHHHHH----HHHHHHH----------HHHH-HHHHHHHHHHHHHHHhhhhhh
Q 009998 77 NFYFIRHRQYDDPKIRAKIDLTDREIQRRNQAR----MQLMDEL----------RAKR-VIRGDLAAQLRSLKTEGRQYK 141 (520)
Q Consensus 77 ~~yfVK~~rpDd~~lkakI~~a~keI~kl~q~R----~~I~akl----------~~~r-~~R~eL~~qLkaLr~qqk~~r 141 (520)
|+|||-=-.+....+...+++++.+|.-+-+=. =.=.+++ ++.- .+--.+..+|..|+...+++-
T Consensus 115 S~y~iN~~a~t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le 194 (1072)
T KOG0979|consen 115 SKYFINDSATTKSEIEELVAHFNIQIDNLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLE 194 (1072)
T ss_pred cceeeccchhhhHHHHHHHHHHhcccCchhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHH
Confidence 799997567778889999999988887665422 1111222 1211 224455566666666666666
Q ss_pred HHHHHHHHhhHHHHHHHHhhhh-hhccccCCCCCCHHHHHHHHHHHHHHH-----hcCCCCcHHHHHHHHHHHHHHHHHH
Q 009998 142 SVMDDKRKEMEPLHQALGKLRT-TNNARSGGICSSEEELDDLIRSLQYRI-----QHEIIPLSEEKQILREIKQLEGTRE 215 (520)
Q Consensus 142 ~~~~eK~kEik~Lq~~L~klre-~~nArsk~~f~SveEID~rI~~LE~~I-----qhgSLsL~EEKklLkEIk~Lkk~Rk 215 (520)
.....+-..++.|.+.++++.- ..+ |.--+-+..+|..|+... .+-++..++.|.... .+++..+
T Consensus 195 ~~~~~~~~~l~~L~~~~~~l~kdVE~------~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~---r~k~~~r 265 (1072)
T KOG0979|consen 195 DKLTTKTEKLNRLEDEIDKLEKDVER------VRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKD---RAKKELR 265 (1072)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHH---HHHHHHH
Confidence 5555555556666555544331 110 111112333344443221 122222333322221 1111111
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 216 KVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFA 295 (520)
Q Consensus 216 ~v~a~~~~~akiq~s~~~ke~~~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~ 295 (520)
.+ ...+..|.+.. +.+..+.+.....++.+.-+++....++.++-+++..+.+++..+..++..+....+.--+
T Consensus 266 ~l---~k~~~pi~~~~---eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~ 339 (1072)
T KOG0979|consen 266 KL---EKEIKPIEDKK---EELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQK 339 (1072)
T ss_pred HH---HHhhhhhhhhh---hhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11111222211 1222233344444555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHH
Q 009998 296 NIKELRKQRD 305 (520)
Q Consensus 296 ~i~~LRke~d 305 (520)
.|...++.+.
T Consensus 340 ~i~~~~k~i~ 349 (1072)
T KOG0979|consen 340 RIEKAKKMIL 349 (1072)
T ss_pred HHHHHHHHHH
Confidence 5544444443
No 145
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=79.13 E-value=16 Score=31.22 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHh
Q 009998 94 KIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKE 150 (520)
Q Consensus 94 kI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kE 150 (520)
.|.-++-+|..+++....+..+++.++..|.+|..+...|++++..+...+.+-+-.
T Consensus 19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355567778888888888888888888889999999988888888877665554433
No 146
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.74 E-value=1.5e+02 Score=35.37 Aligned_cols=48 Identities=17% Similarity=0.112 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009998 91 IRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGR 138 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk 138 (520)
+...|+.+.+....+...+.++.++++.....-..+-.++.-|+.+..
T Consensus 669 lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 669 LDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555555555555556666666666665556666666666665554
No 147
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=78.37 E-value=34 Score=35.99 Aligned_cols=110 Identities=17% Similarity=0.251 Sum_probs=53.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 009998 246 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMS 325 (520)
Q Consensus 246 ~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~karela 325 (520)
.++..+.++...+...+.+++.....+..++..|+.+...+.......+...+.+.-+......+..
T Consensus 50 ~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~------------- 116 (314)
T PF04111_consen 50 EELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERD------------- 116 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 3455555555555555555555555555555655555555555555555554444443333222111
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHhCChHhHHHHHHHhHHHHhhhhhccCCCCCC
Q 009998 326 VKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRN 379 (520)
Q Consensus 326 ~~~~v~el~~~~~~eve~fm~~wn~~~~FR~dY~k~~~~s~~~R~~~~DGR~~~ 379 (520)
.+..--.+..+++++--..=-=|+.|. | |.+--++|=.|=-+|
T Consensus 117 ---sl~~q~~~~~~~L~~L~ktNv~n~~F~------I--~hdG~fGTINGlRLG 159 (314)
T PF04111_consen 117 ---SLKNQYEYASNQLDRLRKTNVYNDTFH------I--WHDGPFGTINGLRLG 159 (314)
T ss_dssp ---HHHHHHHHHHHHHHCHHT--TTTTT--------E--EEETTEEEETTEEE-
T ss_pred ---HHHHHHHHHHHHHHHHHhcCchhceee------E--eecCCeeeECCeeec
Confidence 111222345555555554444566773 2 334577777776666
No 148
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=78.15 E-value=35 Score=28.55 Aligned_cols=47 Identities=26% Similarity=0.316 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANI 297 (520)
Q Consensus 251 lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i 297 (520)
|+.+++.++.+-..+.+....+..+...|+.+..+.....+.+..++
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333333333344444444444444444444444444333
No 149
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=78.07 E-value=39 Score=33.72 Aligned_cols=87 Identities=16% Similarity=0.227 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 206 EIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVND 285 (520)
Q Consensus 206 EIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~~~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~a 285 (520)
||+=|+.+.+..-+ .+.....+|-.||..+...++.+......+..+...+..-.-++..
T Consensus 11 EIsLLKqQLke~q~--------------------E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ 70 (202)
T PF06818_consen 11 EISLLKQQLKESQA--------------------EVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEV 70 (202)
T ss_pred hHHHHHHHHHHHHH--------------------HHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHH
Confidence 68888888776332 2223333444455555555555444444444444433333334333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 009998 286 VAEKRDKAFANIKELRKQRDEGNAYFF 312 (520)
Q Consensus 286 l~~krdeay~~i~~LRke~de~n~~f~ 312 (520)
+..+-+..-....-||.+......+..
T Consensus 71 ce~ELqr~~~Ea~lLrekl~~le~El~ 97 (202)
T PF06818_consen 71 CENELQRKKNEAELLREKLGQLEAELA 97 (202)
T ss_pred hHHHHHHHhCHHHHhhhhhhhhHHHHH
Confidence 333333333333334444333333333
No 150
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=77.95 E-value=1.9e+02 Score=36.03 Aligned_cols=31 Identities=13% Similarity=0.328 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhHHHH
Q 009998 125 DLAAQLRSLKTEGRQYKSVMDDKRKEMEPLH 155 (520)
Q Consensus 125 eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq 155 (520)
+...++...+++.+.+...+..+.++++-++
T Consensus 498 e~~ek~~~~~~~~~~l~~~~~~~~eele~~q 528 (1317)
T KOG0612|consen 498 EVEEKLSEEEAKKRKLEALVRQLEEELEDAQ 528 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444443
No 151
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=77.86 E-value=42 Score=35.30 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 009998 288 EKRDKAFANIKELRKQRDEGNA 309 (520)
Q Consensus 288 ~krdeay~~i~~LRke~de~n~ 309 (520)
...+...-.+..+.++++....
T Consensus 99 ~~~n~~~~~l~~~~~e~~sl~~ 120 (314)
T PF04111_consen 99 REYNELQLELIEFQEERDSLKN 120 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 152
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=77.21 E-value=1.2e+02 Score=33.28 Aligned_cols=7 Identities=43% Similarity=0.548 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 009998 207 IKQLEGT 213 (520)
Q Consensus 207 Ik~Lkk~ 213 (520)
|.+|+..
T Consensus 256 l~~l~~~ 262 (498)
T TIGR03007 256 IEALEKQ 262 (498)
T ss_pred HHHHHHH
Confidence 3333333
No 153
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=77.19 E-value=22 Score=28.58 Aligned_cols=44 Identities=20% Similarity=0.371 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 255 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIK 298 (520)
Q Consensus 255 ldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~ 298 (520)
++.|-..+..|..++..|..+++.|+.+..+++++=..+..+|+
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444445555555555555555554444444444
No 154
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=77.03 E-value=1.1e+02 Score=32.70 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHHHHH
Q 009998 329 DVQGLKELSNSEVEK 343 (520)
Q Consensus 329 ~v~el~~~~~~eve~ 343 (520)
.+.+|+.+|.+=.|.
T Consensus 273 s~sdLksl~~aLle~ 287 (319)
T PF09789_consen 273 SISDLKSLATALLET 287 (319)
T ss_pred hHHHHHHHHHHHHHH
Confidence 477888888765543
No 155
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=76.92 E-value=42 Score=32.11 Aligned_cols=61 Identities=15% Similarity=0.250 Sum_probs=40.4
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 243 LMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ 303 (520)
Q Consensus 243 ~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke 303 (520)
.++.++..||+.||.+.-.|+-+......-..+|..-.+.+++.+.....+...+.+|=.+
T Consensus 81 P~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~e 141 (159)
T PF04949_consen 81 PMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSE 141 (159)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666677777777777776666666666666666677777777777766666665443
No 156
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=76.62 E-value=18 Score=36.69 Aligned_cols=64 Identities=22% Similarity=0.366 Sum_probs=48.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 009998 246 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 309 (520)
Q Consensus 246 ~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~ 309 (520)
..|+++.++-.++...+.++..++.++++.+..|..++.-+...++.+-.+...|++..+++..
T Consensus 142 ekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 142 EKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence 3466677777777777777777777888888888888877888887777777778877777655
No 157
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=76.57 E-value=1.6e+02 Score=34.54 Aligned_cols=276 Identities=16% Similarity=0.124 Sum_probs=0.0
Q ss_pred ecCCCCCCcccCCCCccccCCCCCCCccccCCCCccccceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 39 FGSHGGVGELVNGKESNVSNANLPKDVGEEWPEPRVIHNFYFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRA 118 (520)
Q Consensus 39 fgs~~~~~~~~~~~~~~~~~~~~p~da~~~~~~~~~~~~~yfVK~~rpDd~~lkakI~~a~keI~kl~q~R~~I~akl~~ 118 (520)
|+.|+ ..+..+.++-++-.+.-..-......+.... +++....-.+|..++..+..+...-..+...++.
T Consensus 123 ~~~~~--~t~~~~~~~~~~~~t~~~t~~~~l~~~iee~--------~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~ 192 (698)
T KOG0978|consen 123 ALEHL--NTYGNGNGSLSGTITVNSTELEELRDEIEEL--------RELASTRMEELEKLQLYSDEILRQLDRFRVELRS 192 (698)
T ss_pred HhccC--CCCCCcccccCcccccchhhhhhhccchhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHH---------HhhHHHHHHHHhhhhhhccccCCCCCCHHHHHHHHHHHHHH
Q 009998 119 KRVIRGDLAAQLRSLKTEGRQYKSVMDDKR---------KEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYR 189 (520)
Q Consensus 119 ~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~---------kEik~Lq~~L~klre~~nArsk~~f~SveEID~rI~~LE~~ 189 (520)
+......+.-.+..+. |+..+.-+- +.+..+-+.+...+...+-.+...-....+.|. +..+-+.
T Consensus 193 ~~~~~~~~~~e~~~~~-----~NE~l~~~~~~~~e~~~~~~~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~-~~~in~e 266 (698)
T KOG0978|consen 193 LKEKVRSETFELRCLQ-----YNEELQRKTMESDEAINSKKVIKLEEKLAQCVKEYEMLRKEFENNKSQNDL-FSSINRE 266 (698)
T ss_pred hhHHHHHHHHHHHHHH-----hhhhcccccchhhhhhccchHHHHHHHHHHHHHHHHHHHHhHHHhHHhhhh-hhhHHHH
Q ss_pred HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhccchhhHHHHHHHHHHHHHHHHHHH
Q 009998 190 IQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKV 269 (520)
Q Consensus 190 IqhgSLsL~EEKklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~~~d~iK~l~~eLd~lKkeldalr~kIkel~~k~ 269 (520)
|-|=+=+|.+.-++|++ .++..+..-..|...+.+.+++.+.....-.....+ ++.....++.+-.--+.+...+
T Consensus 267 ~~~L~Ssl~e~~~~l~~--~~~~~k~t~~~~~~lr~~~~s~~~~~~~~~~~~e~l---~~~~~~~~~~~~~~~~~~~~~~ 341 (698)
T KOG0978|consen 267 MRHLISSLQEHEKLLKE--YERELKDTESDNLKLRKQHSSAADSLESKSRDLESL---LDKIQDLISQEAELSKKLRSKL 341 (698)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHhcccchHHHHHHHHHHHHhhccchhHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q 009998 270 KALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSN 338 (520)
Q Consensus 270 ~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~karela~~~~v~el~~~~~ 338 (520)
.+...++..+-.+.+.-...=.+....-++|... .+..+-.++-.+...++-+..+-+.+++.+|+
T Consensus 342 ~~~~~~~~~~~~~~~~e~~k~~di~~~k~el~~~---~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q 407 (698)
T KOG0978|consen 342 LESAKKLKILLREKDRESQKERDILVAKSELLKT---NELRLEMLKSLLKEQRDKLQVKARAETESLLQ 407 (698)
T ss_pred HHHHHHHHhHHHHHHHHhhhhHhHHHHHHHHHHH---HHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHH
No 158
>PRK10884 SH3 domain-containing protein; Provisional
Probab=75.87 E-value=20 Score=35.70 Aligned_cols=29 Identities=7% Similarity=0.247 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 89 PKIRAKIDLTDREIQRRNQARMQLMDELR 117 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~akl~ 117 (520)
|.....+..++.++.+++.....+....+
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44555556666666555555555444433
No 159
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=75.82 E-value=1.1e+02 Score=32.14 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009998 202 QILREIKQLEGTREKVMA 219 (520)
Q Consensus 202 klLkEIk~Lkk~Rk~v~a 219 (520)
++|..|..|+.+.+++..
T Consensus 15 ~aLqKIqelE~QldkLkK 32 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKK 32 (307)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 577888888777766543
No 160
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=75.79 E-value=19 Score=35.02 Aligned_cols=71 Identities=30% Similarity=0.483 Sum_probs=43.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 009998 246 SDLDGVKKESQAVWAKISHLEGKVKA-----LDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 320 (520)
Q Consensus 246 ~eLd~lKkeldalr~kIkel~~k~~a-----l~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~k 320 (520)
.+|..+++++..|+-+|..|...... ++.+++.|.-+|+++..++.. ..+.=||++.+.+.+
T Consensus 105 leL~s~~~ei~~L~~kI~~L~~~in~~~k~~~n~~i~slk~EL~d~iKe~e~-------------~emeLyyecMkkL~~ 171 (181)
T PF04645_consen 105 LELKSIKKEIEILRLKISSLQKEINKNKKKDLNEEIESLKSELNDLIKEREI-------------REMELYYECMKKLAK 171 (181)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHhh
Confidence 45666677777776666655554432 333455555555555444432 456678888888888
Q ss_pred HHHHHhccC
Q 009998 321 AKAMSVKKD 329 (520)
Q Consensus 321 arela~~~~ 329 (520)
|-+...+++
T Consensus 172 a~~~esk~~ 180 (181)
T PF04645_consen 172 AHEVESKSK 180 (181)
T ss_pred hhhhhhccC
Confidence 877765543
No 161
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=75.52 E-value=1.1e+02 Score=31.84 Aligned_cols=54 Identities=17% Similarity=0.376 Sum_probs=26.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDE-----------EIEALQQEVNDVAEKRDKAFANIKELR 301 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~-----------ei~~Lqeel~al~~krdeay~~i~~LR 301 (520)
+..|..+++.+.++|....+.+..+.. .|..|.-+++.+.+..+.=...+..++
T Consensus 83 l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~ 147 (258)
T PF15397_consen 83 LSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMR 147 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555543321 344455555555544444334443333
No 162
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=75.38 E-value=30 Score=28.71 Aligned_cols=59 Identities=22% Similarity=0.254 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de 306 (520)
+..|+..+|.+..++......++.+..+.+..-..+..++...+++-.++..|+++.++
T Consensus 7 ~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 7 IATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555666666666666666666666666666666665543
No 163
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=75.34 E-value=84 Score=36.24 Aligned_cols=80 Identities=15% Similarity=0.306 Sum_probs=37.1
Q ss_pred HHhhccchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 009998 241 VKLMGSDLDGVKKESQAVWAKISHLEGKVK---ALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRAL 317 (520)
Q Consensus 241 iK~l~~eLd~lKkeldalr~kIkel~~k~~---al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~ 317 (520)
+..+..+|.++++++..+++++..+...+. -.+.++..++.+...|..+..+.+..+..|...+..
T Consensus 438 ~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~----------- 506 (652)
T COG2433 438 NSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAE----------- 506 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 334444455555555555555555544432 112234444444444444444444444444444332
Q ss_pred HHHHHHHHhccCHH
Q 009998 318 LNEAKAMSVKKDVQ 331 (520)
Q Consensus 318 ~~karela~~~~v~ 331 (520)
+.+.+.+..+|+..
T Consensus 507 l~k~~~lE~sG~g~ 520 (652)
T COG2433 507 LRKMRKLELSGKGT 520 (652)
T ss_pred HHHHHhhhhcCCCc
Confidence 23455566667643
No 164
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=74.16 E-value=1.4e+02 Score=33.43 Aligned_cols=96 Identities=20% Similarity=0.262 Sum_probs=51.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVK 327 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~karela~~ 327 (520)
.+.++.+.+.+.+.-+.++.++..++..++.+++++.+..+.=..+.++....+.++.++...+-..+ .+. .
T Consensus 363 ~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~----~s~----d 434 (493)
T KOG0804|consen 363 ADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEAL----GSK----D 434 (493)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----HHH----H
Confidence 44455555555555555566666666666666666666665555555555555555544433111111 111 1
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhCChHhH
Q 009998 328 KDVQGLKELSNSEVEKYMTLWNNNKAFR 355 (520)
Q Consensus 328 ~~v~el~~~~~~eve~fm~~wn~~~~FR 355 (520)
..+.+|++ ||--.|-+.-+...|-
T Consensus 435 ~~I~dLqE----QlrDlmf~le~qqklk 458 (493)
T KOG0804|consen 435 EKITDLQE----QLRDLMFFLEAQQKLK 458 (493)
T ss_pred HHHHHHHH----HHHhHheehhhhhhhh
Confidence 24556654 5666777766655553
No 165
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=73.95 E-value=1.6e+02 Score=33.23 Aligned_cols=7 Identities=0% Similarity=0.206 Sum_probs=4.3
Q ss_pred cceeeec
Q 009998 76 HNFYFIR 82 (520)
Q Consensus 76 ~~~yfVK 82 (520)
.+.|||=
T Consensus 106 rs~~~iN 112 (563)
T TIGR00634 106 RSRAYLN 112 (563)
T ss_pred ceEEEEC
Confidence 4667764
No 166
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=73.51 E-value=1.9e+02 Score=33.84 Aligned_cols=39 Identities=31% Similarity=0.364 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHhhhh
Q 009998 125 DLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRT 163 (520)
Q Consensus 125 eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~klre 163 (520)
.|..+|..|.....+++....+++.++..+...+.+|..
T Consensus 100 tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~ 138 (660)
T KOG4302|consen 100 TLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCE 138 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888889999999999999999999888887764
No 167
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=73.24 E-value=2e+02 Score=34.05 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=15.9
Q ss_pred CCCchHHHHHHHHHHHHHHH
Q 009998 85 QYDDPKIRAKIDLTDREIQR 104 (520)
Q Consensus 85 rpDd~~lkakI~~a~keI~k 104 (520)
.|-.+.+..+|+.|..+|+.
T Consensus 454 ~~~~~~L~e~IeKLk~E~d~ 473 (762)
T PLN03229 454 KPSELALNEMIEKLKKEIDL 473 (762)
T ss_pred CCCChHHHHHHHHHHHHHHH
Confidence 67778899999988888743
No 168
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=73.10 E-value=1e+02 Score=30.60 Aligned_cols=13 Identities=31% Similarity=0.621 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 009998 204 LREIKQLEGTREK 216 (520)
Q Consensus 204 LkEIk~Lkk~Rk~ 216 (520)
+.++..+=.....
T Consensus 71 ~~e~~~~a~~H~~ 83 (251)
T cd07653 71 LNEVNDIAGQHEL 83 (251)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444333333
No 169
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=72.83 E-value=1.3e+02 Score=31.61 Aligned_cols=16 Identities=38% Similarity=0.657 Sum_probs=9.0
Q ss_pred hhhHHHHHHHHhhHHH
Q 009998 139 QYKSVMDDKRKEMEPL 154 (520)
Q Consensus 139 ~~r~~~~eK~kEik~L 154 (520)
+|++.+.+|+.++..-
T Consensus 50 q~~~~i~~k~~e~r~~ 65 (338)
T KOG3647|consen 50 QYRSLIGDKIEELRKA 65 (338)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555566666655443
No 170
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=72.25 E-value=94 Score=29.80 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 009998 252 KKESQAVWAKISHLEGKVKAL 272 (520)
Q Consensus 252 Kkeldalr~kIkel~~k~~al 272 (520)
++++..+|.+|+.++..++.+
T Consensus 83 RkEv~~vRkkID~vNreLkpl 103 (159)
T PF04949_consen 83 RKEVEMVRKKIDSVNRELKPL 103 (159)
T ss_pred HHHHHHHHHHHHHHHHHhhHH
Confidence 333333333333333333333
No 171
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=71.37 E-value=2.4e+02 Score=34.08 Aligned_cols=65 Identities=25% Similarity=0.282 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHH
Q 009998 92 RAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALG 159 (520)
Q Consensus 92 kakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~ 159 (520)
.-.|..+-.++. +.+..+-+.+...|.....+..++.++..++..-+-...+-+.+-..|+..+.
T Consensus 332 ~~~~~~~~~e~~---~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~ela 396 (980)
T KOG0980|consen 332 ELQIEQLSREVA---QLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELA 396 (980)
T ss_pred hHHHHHHHHHHH---HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 334444444442 23333444445567777777777877777766655555555555555555443
No 172
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=71.00 E-value=1.2e+02 Score=30.41 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 009998 283 VNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAM 324 (520)
Q Consensus 283 l~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~karel 324 (520)
...+...-+.+...|..+|...+.....|-.-|+.+..=++-
T Consensus 133 ~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKek 174 (202)
T PF06818_consen 133 LGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEK 174 (202)
T ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555666666666666677777777777777665443
No 173
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=70.88 E-value=1.1e+02 Score=30.12 Aligned_cols=38 Identities=32% Similarity=0.371 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 009998 275 EIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFF 312 (520)
Q Consensus 275 ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~ 312 (520)
+...|+.++..+..+-+.....|..|..+..-.++.|-
T Consensus 119 eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~ 156 (194)
T PF15619_consen 119 EREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFR 156 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 46778888888888888888999999888887777553
No 174
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=70.87 E-value=1.4 Score=52.25 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCC----cHHH-HHHHHHHHHHHHHHHH
Q 009998 182 LIRSLQYRIQHEIIP----LSEE-KQILREIKQLEGTREK 216 (520)
Q Consensus 182 rI~~LE~~IqhgSLs----L~EE-KklLkEIk~Lkk~Rk~ 216 (520)
.|..+-.++.+..+. |.+- |++-+.|..|....+.
T Consensus 300 El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~ 339 (859)
T PF01576_consen 300 ELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEE 339 (859)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444 3222 4556666665555443
No 175
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=70.81 E-value=1.9e+02 Score=32.79 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=14.5
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q 009998 174 SSEEELDDLIRSLQYRIQH 192 (520)
Q Consensus 174 ~SveEID~rI~~LE~~Iqh 192 (520)
..+-+||.+|-.|-|++.|
T Consensus 358 ~~lkDLd~~~~aLs~rld~ 376 (531)
T PF15450_consen 358 RQLKDLDDHILALSWRLDL 376 (531)
T ss_pred HHHHHHHHHHHHHhhhhhH
Confidence 3567888888888888665
No 176
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=70.73 E-value=1.1e+02 Score=29.92 Aligned_cols=83 Identities=20% Similarity=0.383 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhCC
Q 009998 272 LDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNN 351 (520)
Q Consensus 272 l~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~karela~~~~v~el~~~~~~eve~fm~~wn~~ 351 (520)
+...+.......+++......+-..+..|+.++..+-..|.... ..+-.|+++|=.++|.||-.=
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee---------------~~~~~y~~~eh~rll~LWr~v 150 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEE---------------ENFNQYLSSEHSRLLSLWREV 150 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHhhhcccccHHHHHHHHH
Confidence 33344444444445555555555555555555555444443322 235678889999999999999
Q ss_pred hHhHHHHHHHhHHHHhhhhh
Q 009998 352 KAFRDDYEKRLLQSLDMRQL 371 (520)
Q Consensus 352 ~~FR~dY~k~~~~s~~~R~~ 371 (520)
-.||..|.. +++.-.|=|
T Consensus 151 ~~lRr~f~e--lr~~TerdL 168 (182)
T PF15035_consen 151 VALRRQFAE--LRTATERDL 168 (182)
T ss_pred HHHHHHHHH--HHHHHHhhH
Confidence 999999987 666555543
No 177
>PRK10869 recombination and repair protein; Provisional
Probab=70.59 E-value=1.9e+02 Score=32.74 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHhCChHhHHHHHHHhHHHHh
Q 009998 329 DVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLD 367 (520)
Q Consensus 329 ~v~el~~~~~~eve~fm~~wn~~~~FR~dY~k~~~~s~~ 367 (520)
+..+|+..+..--+.++.+=..--..|..+-+....++.
T Consensus 342 ~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~ 380 (553)
T PRK10869 342 DLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLIT 380 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555655555566666666665555443
No 178
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=70.50 E-value=42 Score=32.37 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHH
Q 009998 201 KQILREIKQLEGTRE 215 (520)
Q Consensus 201 KklLkEIk~Lkk~Rk 215 (520)
|++-.+|+.-++.|+
T Consensus 57 kqY~~~i~~AKkqRk 71 (161)
T TIGR02894 57 KQYEEAIELAKKQRK 71 (161)
T ss_pred HHHHHHHHHHHHHHh
Confidence 445555555555555
No 179
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=70.37 E-value=2.3e+02 Score=33.40 Aligned_cols=53 Identities=8% Similarity=0.186 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 009998 267 GKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLN 319 (520)
Q Consensus 267 ~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~ 319 (520)
.-+.+++++=.-|..-|-+=+....++|..+.+-|.|+.......+..-.++.
T Consensus 594 ~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~ 646 (697)
T PF09726_consen 594 SALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIE 646 (697)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555666777777777777777666555544444433
No 180
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=69.67 E-value=80 Score=27.93 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=13.3
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHH
Q 009998 183 IRSLQYRIQHEIIPLSEEKQILREIKQLEGT 213 (520)
Q Consensus 183 I~~LE~~IqhgSLsL~EEKklLkEIk~Lkk~ 213 (520)
+..+..+++.=...+.|=+.++.+++.|...
T Consensus 19 ~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d 49 (110)
T TIGR02338 19 LQAVATQKQQVEAQLKEAEKALEELERLPDD 49 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 3333333333344444444444444444433
No 181
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=68.73 E-value=97 Score=28.52 Aligned_cols=11 Identities=36% Similarity=0.295 Sum_probs=6.0
Q ss_pred hHhHHHHHHHh
Q 009998 352 KAFRDDYEKRL 362 (520)
Q Consensus 352 ~~FR~dY~k~~ 362 (520)
.+-|.-|+.|-
T Consensus 134 ~~~R~~yH~R~ 144 (150)
T PF07200_consen 134 KEKRKLYHLRR 144 (150)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34566666543
No 182
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=68.39 E-value=1.1e+02 Score=29.08 Aligned_cols=59 Identities=29% Similarity=0.383 Sum_probs=44.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de 306 (520)
|+-+|.++..+...+..+...+......+..+.+++..+...|+.+......|+.+-.-
T Consensus 79 L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~ 137 (177)
T PF13870_consen 79 LTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGL 137 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45566777777777777777777777778888888888888888888888888776543
No 183
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=68.36 E-value=1.3e+02 Score=29.98 Aligned_cols=69 Identities=28% Similarity=0.334 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHhhHHHHHHHHhhhhhhcc--ccCCCCCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 009998 139 QYKSVMDDKRKEMEPLHQALGKLRTTNNA--RSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIK 208 (520)
Q Consensus 139 ~~r~~~~eK~kEik~Lq~~L~klre~~nA--rsk~~f~SveEID~rI~~LE~~IqhgSLsL~EEKklLkEIk 208 (520)
.|+..+..-=.++..++..|..++.. .. .......|.++|..+|......+..-.-.|.+....|..|.
T Consensus 42 ~~~~~i~~aP~~~~~l~~~l~~l~~~-~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~ 112 (240)
T PF12795_consen 42 EYQKQIDQAPKEIRELQKELEALKSQ-DAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQ 112 (240)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhhhcc-ccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445566666666555432 11 12234578899998888887777665555555544444443
No 184
>PF13514 AAA_27: AAA domain
Probab=68.36 E-value=2.9e+02 Score=33.91 Aligned_cols=11 Identities=18% Similarity=0.003 Sum_probs=5.8
Q ss_pred CCCCCCCCccc
Q 009998 376 RIRNPDEKPLV 386 (520)
Q Consensus 376 R~~~pde~p~~ 386 (520)
-+.++|..+|+
T Consensus 1000 l~~d~d~~~~~ 1010 (1111)
T PF13514_consen 1000 LRVDEDGDKPV 1010 (1111)
T ss_pred eeeccccCccc
Confidence 34566665543
No 185
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=68.29 E-value=1.2e+02 Score=29.87 Aligned_cols=7 Identities=43% Similarity=1.108 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 009998 342 EKYMTLW 348 (520)
Q Consensus 342 e~fm~~w 348 (520)
.++..+|
T Consensus 162 ~~~~~~w 168 (201)
T KOG4603|consen 162 QKYCKEW 168 (201)
T ss_pred HHHHHHH
Confidence 3444444
No 186
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=67.91 E-value=1.9e+02 Score=31.61 Aligned_cols=23 Identities=4% Similarity=0.106 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 009998 89 PKIRAKIDLTDREIQRRNQARMQ 111 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~ 111 (520)
..+..++..++.++..+...+..
T Consensus 100 ~~~~~~~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 100 QLLEQQLDNLKDQKKSLDTLKQS 122 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777776655544
No 187
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=67.67 E-value=1.8e+02 Score=31.25 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009998 106 NQARMQLMDELRAKRVIRGDLAAQLRSLKTEGR 138 (520)
Q Consensus 106 ~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk 138 (520)
.....-|...+...+.+-.....+|...+.+..
T Consensus 170 ~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~ 202 (444)
T TIGR03017 170 QKAALWFVQQIAALREDLARAQSKLSAYQQEKG 202 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344455788888888888888888877777664
No 188
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=67.32 E-value=1.2e+02 Score=34.57 Aligned_cols=25 Identities=36% Similarity=0.406 Sum_probs=14.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 009998 299 ELRKQRDEGNAYFFQYRALLNEAKA 323 (520)
Q Consensus 299 ~LRke~de~n~~f~~~r~~~~kare 323 (520)
+|+.-.+..+.+|.+...-+...+.
T Consensus 289 ~i~~~~~~~~~~y~~~~p~i~~~~~ 313 (555)
T TIGR03545 289 EIRKYLQKFLKYYDQAEPLLNKSKK 313 (555)
T ss_pred HHHHHHHHHHHHHHHHhHhhccchh
Confidence 4555555666666666666655543
No 189
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=67.26 E-value=16 Score=30.97 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 009998 266 EGKVKALDEEIEALQQ 281 (520)
Q Consensus 266 ~~k~~al~~ei~~Lqe 281 (520)
.+++.++...+..|+.
T Consensus 41 ~~klDa~~~~l~~l~~ 56 (75)
T PF05531_consen 41 NKKLDAQSAQLTTLNT 56 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 190
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=67.15 E-value=31 Score=37.78 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=35.1
Q ss_pred HHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 240 QVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDE---EIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 307 (520)
Q Consensus 240 ~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~---ei~~Lqeel~al~~krdeay~~i~~LRke~de~ 307 (520)
.+-.++.+.-.+..+++.++.+.+.+.+++..... +...|.++...+.++...+-+.+..|..++++.
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555556666666655555543211 234555555555555555555555555555443
No 191
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.95 E-value=42 Score=28.29 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 009998 95 IDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDD 146 (520)
Q Consensus 95 I~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~e 146 (520)
|.-++-+|..+++..+.+......++..|..|..+-..|.+++.++..-+.+
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrs 71 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRA 71 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777777777777777777777777766544433
No 192
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=66.87 E-value=1e+02 Score=28.59 Aligned_cols=50 Identities=14% Similarity=0.254 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANI 297 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i 297 (520)
|+.|-.++|+..+-.+.+.+++..++.++..+..+++.+...-..+-.+|
T Consensus 70 Id~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 70 IDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444333333
No 193
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=66.70 E-value=1.2e+02 Score=28.74 Aligned_cols=21 Identities=38% Similarity=0.420 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 009998 199 EEKQILREIKQLEGTREKVMA 219 (520)
Q Consensus 199 EEKklLkEIk~Lkk~Rk~v~a 219 (520)
|||+-.+|+..|......+..
T Consensus 31 E~KRgdRE~~~L~~~~~~~~e 51 (145)
T PF14942_consen 31 EEKRGDREVRVLENLTEMISE 51 (145)
T ss_pred HHccCcHHHHHHHHHHHHHHH
Confidence 578899999999998887654
No 194
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=66.26 E-value=32 Score=27.68 Aligned_cols=45 Identities=22% Similarity=0.436 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDK 292 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krde 292 (520)
|+.|-.++..|..++..|...+..++.++...++|-.-++..+|-
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555555555555555555555555555555543
No 195
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=66.10 E-value=36 Score=37.27 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=7.7
Q ss_pred chhhHHHHHHHHHHHHH
Q 009998 247 DLDGVKKESQAVWAKIS 263 (520)
Q Consensus 247 eLd~lKkeldalr~kIk 263 (520)
+++.|+.+++.+...|+
T Consensus 43 ~~~~lr~~rn~~sk~i~ 59 (425)
T PRK05431 43 ELEELQAERNALSKEIG 59 (425)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 196
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=66.10 E-value=2.8e+02 Score=32.79 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCcH-HHHHHHHHHHHHHHHHHH
Q 009998 177 EELDDLIRSLQYRIQHEIIPLS-EEKQILREIKQLEGTREK 216 (520)
Q Consensus 177 eEID~rI~~LE~~IqhgSLsL~-EEKklLkEIk~Lkk~Rk~ 216 (520)
+.|..|+..|=..+++..=.|. .|+.+.+|...++.....
T Consensus 610 e~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~ 650 (717)
T PF10168_consen 610 EKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQD 650 (717)
T ss_pred HHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5577777766666654321133 368888887777766443
No 197
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=65.80 E-value=64 Score=27.25 Aligned_cols=59 Identities=24% Similarity=0.382 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de 306 (520)
++++.+-++.+..++..+..+...+-.+.+.+.+..+.-.+.-+..+.....+-.-...
T Consensus 28 l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~ 86 (90)
T PF06103_consen 28 LDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSE 86 (90)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444445555555555555555555555555444443
No 198
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.92 E-value=2.7e+02 Score=32.17 Aligned_cols=75 Identities=21% Similarity=0.278 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHhhhh
Q 009998 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRT 163 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~klre 163 (520)
|......+.++.+|..+.....+....+-..-.=--++..+--.|..+...+...++.-+-+|+.+++++++.+.
T Consensus 4 ~~aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s 78 (772)
T KOG0999|consen 4 PMAEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRS 78 (772)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777666665544333333333445555566666666677777777888999999987764
No 199
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=64.64 E-value=21 Score=31.60 Aligned_cols=35 Identities=17% Similarity=0.436 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVND 285 (520)
Q Consensus 251 lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~a 285 (520)
|++.++.+...|+.+.++...+...+..++..+..
T Consensus 72 l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 72 LKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444433
No 200
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=64.46 E-value=1.7e+02 Score=29.83 Aligned_cols=16 Identities=19% Similarity=0.356 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 009998 206 EIKQLEGTREKVMANA 221 (520)
Q Consensus 206 EIk~Lkk~Rk~v~a~~ 221 (520)
||+.|+.+-+-+..++
T Consensus 44 e~~eLk~qnkli~K~l 59 (230)
T PF03904_consen 44 EIQELKRQNKLIIKYL 59 (230)
T ss_pred HHHHHHHhhHHHHHHH
Confidence 7888888877655544
No 201
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=63.93 E-value=1.7e+02 Score=29.50 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCcHH
Q 009998 175 SEEELDDLIRSLQYRIQHEIIPLSE 199 (520)
Q Consensus 175 SveEID~rI~~LE~~IqhgSLsL~E 199 (520)
..++=-.+|..|...+..+.+++.|
T Consensus 125 ~~~eR~~Rl~~L~~~l~~~dv~~~e 149 (251)
T PF11932_consen 125 LLEERQERLARLRAMLDDADVSLAE 149 (251)
T ss_pred ChHHHHHHHHHHHHhhhccCCCHHH
Confidence 3334455677777777777777764
No 202
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=63.75 E-value=2.1e+02 Score=30.71 Aligned_cols=43 Identities=12% Similarity=0.235 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHHHHHhcCC--CCcHH----HHHHHHHHHHHHHHHH
Q 009998 173 CSSEEELDDLIRSLQYRIQHEI--IPLSE----EKQILREIKQLEGTRE 215 (520)
Q Consensus 173 f~SveEID~rI~~LE~~IqhgS--LsL~E----EKklLkEIk~Lkk~Rk 215 (520)
...+.++|+||..||..|.+++ |+... -.-++.=|..|...-.
T Consensus 208 la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~ls 256 (388)
T PF04912_consen 208 LARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLS 256 (388)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHH
Confidence 4668899999999999999943 33221 3455555666655533
No 203
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=63.65 E-value=77 Score=25.53 Aligned_cols=57 Identities=23% Similarity=0.359 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhC
Q 009998 290 RDKAFANIKELRKQRDEGNA-YFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNN 350 (520)
Q Consensus 290 rdeay~~i~~LRke~de~n~-~f~~~r~~~~karela~~~~v~el~~~~~~eve~fm~~wn~ 350 (520)
.+.+|..+..+...++.... .+-.....+.+++.++...+.. -+..++..++..|+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~n~~~K~~Li~~~~~l~~~~d~~----~~~~~~k~l~~~Wk~ 68 (77)
T PF03993_consen 11 CDAFFDRRKEFFEEQDAEREENLEKKEALIEEAEALAESEDWK----EAAEEIKELQQEWKE 68 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH----HHHHHHHHHHHHHHH
Confidence 44555555555555554433 5666677778888888887733 345567777777764
No 204
>PLN02678 seryl-tRNA synthetase
Probab=63.49 E-value=38 Score=37.54 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 276 IEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 276 i~~Lqeel~al~~krdeay~~i~~LRke~d 305 (520)
...|.++...+.+++..+-..+..|..++.
T Consensus 73 ~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 73 ATELIAETKELKKEITEKEAEVQEAKAALD 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 205
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=63.47 E-value=2.6e+02 Score=32.78 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=10.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q 009998 197 LSEEKQILREIKQLEGTREKV 217 (520)
Q Consensus 197 L~EEKklLkEIk~Lkk~Rk~v 217 (520)
+.+-..+..++..|......+
T Consensus 174 ~k~~~~~~~~~~~~~~~l~~v 194 (670)
T KOG0239|consen 174 LKESLKLESDLGDLVTELEHV 194 (670)
T ss_pred HHHHHHHhhhHHHHHHHHHHH
Confidence 344445555555554444433
No 206
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=63.42 E-value=39 Score=28.75 Aligned_cols=47 Identities=23% Similarity=0.415 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 009998 258 VWAKISHLEGKVKALDEEIEALQQEVND---VAEKRDKAFANIKELRKQR 304 (520)
Q Consensus 258 lr~kIkel~~k~~al~~ei~~Lqeel~a---l~~krdeay~~i~~LRke~ 304 (520)
+|+.|+.+.++..+++..++.|...+.. ++.+.|..-..+..|-.+.
T Consensus 9 Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V 58 (75)
T PF05531_consen 9 IRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKV 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433322 3334444444444443333
No 207
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=63.23 E-value=99 Score=29.71 Aligned_cols=50 Identities=22% Similarity=0.371 Sum_probs=29.1
Q ss_pred hHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 237 IQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDV 286 (520)
Q Consensus 237 ~~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al 286 (520)
+.+.+-.....+.+.++.+..++.+|..|...++.+...|..+..+++-+
T Consensus 56 ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf 105 (157)
T COG3352 56 IENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPF 105 (157)
T ss_pred HHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 44455445556666777777777766666666666655555444444433
No 208
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=63.17 E-value=1.3e+02 Score=27.87 Aligned_cols=43 Identities=19% Similarity=0.496 Sum_probs=19.5
Q ss_pred hhhhhHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 233 KKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEE 275 (520)
Q Consensus 233 ~ke~~~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~e 275 (520)
..+.+.+.+..+..++..+...+..+..++..+..++..+...
T Consensus 53 ~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~ 95 (151)
T PF11559_consen 53 QREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEK 95 (151)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555544444444444444444444444444333333
No 209
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=62.68 E-value=1.8e+02 Score=29.45 Aligned_cols=70 Identities=9% Similarity=0.162 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHH
Q 009998 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQAL 158 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L 158 (520)
...+-.++.++.++..+...-..+..+.......-..+..........-..+...+......|..+-..+
T Consensus 41 ~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~ 110 (264)
T PF06008_consen 41 NPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQV 110 (264)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666665655555555555555444444444444444444444444444444444444443333
No 210
>PLN02678 seryl-tRNA synthetase
Probab=62.54 E-value=35 Score=37.80 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=16.7
Q ss_pred cHHH-HHHHHHHHHHHHHHHHHHH
Q 009998 197 LSEE-KQILREIKQLEGTREKVMA 219 (520)
Q Consensus 197 L~EE-KklLkEIk~Lkk~Rk~v~a 219 (520)
|.++ +.++.++..|+..|..++.
T Consensus 38 ld~~~r~l~~~~e~lr~erN~~sk 61 (448)
T PLN02678 38 LDKEWRQRQFELDSLRKEFNKLNK 61 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 6778888888888887665
No 211
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=62.24 E-value=1.2e+02 Score=27.41 Aligned_cols=25 Identities=16% Similarity=-0.009 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Q 009998 295 ANIKELRKQRDEGNAYFFQYRALLN 319 (520)
Q Consensus 295 ~~i~~LRke~de~n~~f~~~r~~~~ 319 (520)
.....|...+......|.......+
T Consensus 88 ~q~~~L~~~f~~~m~~fq~~Q~~~~ 112 (151)
T cd00179 88 TQHSGLSKKFVEVMTEFNKAQRKYR 112 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544443
No 212
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=61.00 E-value=2.8e+02 Score=31.11 Aligned_cols=52 Identities=25% Similarity=0.388 Sum_probs=30.4
Q ss_pred HhhhhhhhhhHHHHHh-hcc----------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 228 QESMGKKEDIQDQVKL-MGS----------DLDGVKKESQAVWAKISHLEGKVKALDEEIEAL 279 (520)
Q Consensus 228 q~s~~~ke~~~d~iK~-l~~----------eLd~lKkeldalr~kIkel~~k~~al~~ei~~L 279 (520)
...+..++..++.+|. ... +++.++.+.+.++..+..++-++..+..++..+
T Consensus 245 ~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~ 307 (511)
T PF09787_consen 245 QRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDL 307 (511)
T ss_pred HHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666665 111 256677777777777666666665555554433
No 213
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=60.67 E-value=32 Score=27.63 Aligned_cols=28 Identities=21% Similarity=0.510 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 265 LEGKVKALDEEIEALQQEVNDVAEKRDK 292 (520)
Q Consensus 265 l~~k~~al~~ei~~Lqeel~al~~krde 292 (520)
++.++..+...++.++.+...+....++
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~ 32 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEK 32 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444433333333
No 214
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=60.49 E-value=2.8 Score=49.61 Aligned_cols=68 Identities=13% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 240 QVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 307 (520)
Q Consensus 240 ~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~ 307 (520)
..+.+...|.+++..++.....++++......+..++..|..++.........+......|..++++.
T Consensus 181 ~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeel 248 (859)
T PF01576_consen 181 KRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEEL 248 (859)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555666666666666666666666666666666665555555555444444444444444433
No 215
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=60.23 E-value=1.6e+02 Score=28.02 Aligned_cols=81 Identities=14% Similarity=0.072 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhCChHhHHHH
Q 009998 279 LQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDY 358 (520)
Q Consensus 279 Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~karela~~~~v~el~~~~~~eve~fm~~wn~~~~FR~dY 358 (520)
+..+...+..........+..+|.+.......--..+....+.+.-..--.+..|=.-|...++..-.++..=..+|..+
T Consensus 89 ~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~ 168 (177)
T PF13870_consen 89 LSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKV 168 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444333333333333344433332222445665556666666666666666666544
Q ss_pred H
Q 009998 359 E 359 (520)
Q Consensus 359 ~ 359 (520)
.
T Consensus 169 ~ 169 (177)
T PF13870_consen 169 E 169 (177)
T ss_pred H
Confidence 3
No 216
>PLN02320 seryl-tRNA synthetase
Probab=59.79 E-value=50 Score=37.23 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 009998 249 DGVKKESQAVWAKISHLEGKV 269 (520)
Q Consensus 249 d~lKkeldalr~kIkel~~k~ 269 (520)
-.+..+++.++.+.+.+.+++
T Consensus 103 r~~~~~~~~lr~ern~~sk~i 123 (502)
T PLN02320 103 LALQKEVERLRAERNAVANKM 123 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444
No 217
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=59.67 E-value=1.4e+02 Score=27.22 Aligned_cols=39 Identities=15% Similarity=0.301 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 254 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDK 292 (520)
Q Consensus 254 eldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krde 292 (520)
-+..+..+++.+.+.+..+...+..++.+++.+....++
T Consensus 95 A~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 95 AIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444443333333
No 218
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=59.54 E-value=1.1e+02 Score=26.26 Aligned_cols=50 Identities=20% Similarity=0.276 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKEL 300 (520)
Q Consensus 251 lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~L 300 (520)
|+-+++.++.+-..+......+......|..+...+...++.--++++.|
T Consensus 23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433333333333333333344444444444444444444433
No 219
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=59.30 E-value=4.4e+02 Score=32.84 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHHHHHhcC
Q 009998 174 SSEEELDDLIRSLQYRIQHE 193 (520)
Q Consensus 174 ~SveEID~rI~~LE~~Iqhg 193 (520)
.+..+...++.+++.+++.+
T Consensus 144 q~~~~~~~~l~~i~~~L~~~ 163 (1109)
T PRK10929 144 QQQTEARRQLNEIERRLQTL 163 (1109)
T ss_pred hhHHHHHHHHHHHHHHHhCC
Confidence 45577888888888888774
No 220
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=59.30 E-value=2.6e+02 Score=30.21 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 89 PKIRAKIDLTDREIQRRNQARMQLMDELRA 118 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~akl~~ 118 (520)
..|...|..+..+|..|...+..+-..+..
T Consensus 60 ~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~ 89 (384)
T PF03148_consen 60 NELERELEELDEEIDLLEEEKRRLEKALEA 89 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888888887777765
No 221
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=59.19 E-value=3.7e+02 Score=31.97 Aligned_cols=21 Identities=5% Similarity=0.161 Sum_probs=13.6
Q ss_pred CCchHHHHHHHHHHHHHHHHH
Q 009998 86 YDDPKIRAKIDLTDREIQRRN 106 (520)
Q Consensus 86 pDd~~lkakI~~a~keI~kl~ 106 (520)
..+-.|..++..|.++|-+.+
T Consensus 429 ~~~~~Le~elekLk~eilKAk 449 (762)
T PLN03229 429 TPVRELEGEVEKLKEQILKAK 449 (762)
T ss_pred CCCccHHHHHHHHHHHHHhcc
Confidence 445567777777777776654
No 222
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=59.14 E-value=3.9e+02 Score=32.24 Aligned_cols=68 Identities=10% Similarity=0.060 Sum_probs=37.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHH
Q 009998 87 DDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPL 154 (520)
Q Consensus 87 Dd~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~L 154 (520)
|.-.+...+-+.+.+|.-|...-..+-.++.++++-++.+.++++...-+....++.+....+++-+-
T Consensus 93 dv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk 160 (1265)
T KOG0976|consen 93 DVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAK 160 (1265)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 44445555555555555555544445555566666666666666666555555555555444444443
No 223
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=58.62 E-value=1.3e+02 Score=31.68 Aligned_cols=50 Identities=26% Similarity=0.478 Sum_probs=32.3
Q ss_pred HHHHhhHHHHHHHHhhhhhhccccCCCCCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHH
Q 009998 146 DKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREK 216 (520)
Q Consensus 146 eK~kEik~Lq~~L~klre~~nArsk~~f~SveEID~rI~~LE~~IqhgSLsL~EEKklLkEIk~Lkk~Rk~ 216 (520)
++--||..|+..|.++|+ +=|+.+..+.|.++. | |.+=+||+||+..-+.
T Consensus 86 dRetEI~eLksQL~RMrE-------------DWIEEECHRVEAQLA-----L---KEARkEIkQLkQvieT 135 (305)
T PF15290_consen 86 DRETEIDELKSQLARMRE-------------DWIEEECHRVEAQLA-----L---KEARKEIKQLKQVIET 135 (305)
T ss_pred hhHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHH-----H---HHHHHHHHHHHHHHHH
Confidence 334578888888888874 457777777777753 2 3334566666655444
No 224
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=58.07 E-value=1.5e+02 Score=26.96 Aligned_cols=41 Identities=12% Similarity=0.305 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 252 KKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDK 292 (520)
Q Consensus 252 Kkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krde 292 (520)
.++.+++++-+..|..+.......++.|+.+++.+....+.
T Consensus 36 ~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 36 AKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444443
No 225
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=58.01 E-value=3.3 Score=38.22 Aligned_cols=60 Identities=12% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHhccCH
Q 009998 271 ALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE---GNAYFFQYRALLNEAKAMSVKKDV 330 (520)
Q Consensus 271 al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de---~n~~f~~~r~~~~karela~~~~v 330 (520)
.+...+......+..|......++.+++.|....+. ....+-+-|..+..||+.|.+-.|
T Consensus 49 ~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~~~~ls~nI~~IrelI~qAR~~An~IkV 111 (138)
T PF06009_consen 49 DANKALDDANNSVKNLEQLAPDLLDKLKPLENLSENNSNLSRNISRIRELIAQARDAANRIKV 111 (138)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhheee
Confidence 333334444444444444445555555555555544 556666667777778888776433
No 226
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=57.98 E-value=72 Score=34.85 Aligned_cols=67 Identities=16% Similarity=0.292 Sum_probs=30.2
Q ss_pred HHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 240 QVKLMGSDLDGVKKESQAVWAKISHLEGKVKALD---EE-IEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 240 ~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~---~e-i~~Lqeel~al~~krdeay~~i~~LRke~de 306 (520)
++-.++.+.-.+..+++.++.+.+.+.+++.... ++ ...|.++...+.+++..+-..+..|..++.+
T Consensus 31 ~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 31 KLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344445555555555555554443321 11 3444445555555555544444444444433
No 227
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=57.85 E-value=4.5e+02 Score=32.47 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 009998 110 MQLMDELRAKRVIRGDLAAQLRSLKTEGRQYK 141 (520)
Q Consensus 110 ~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r 141 (520)
+.+..++..++.+|.-.+.++..|..++..+.
T Consensus 304 iqlkqkl~dm~~erdtdr~kteeL~eEnstLq 335 (1195)
T KOG4643|consen 304 IQLKQKLDDMRSERDTDRHKTEELHEENSTLQ 335 (1195)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 45667777778888888888777777665543
No 228
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=57.52 E-value=1e+02 Score=31.00 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=9.4
Q ss_pred HhHHHHHHHhHHHHhhhh
Q 009998 353 AFRDDYEKRLLQSLDMRQ 370 (520)
Q Consensus 353 ~FR~dY~k~~~~s~~~R~ 370 (520)
+.+.-|+.--.||=--|-
T Consensus 132 ~Il~RYHEEQiWSDKIRr 149 (207)
T PF05546_consen 132 AILTRYHEEQIWSDKIRR 149 (207)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345555555556544443
No 229
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=56.89 E-value=61 Score=35.40 Aligned_cols=32 Identities=19% Similarity=0.361 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 266 EGKVKALDEEIEALQQEVNDVAEKRDKAFANI 297 (520)
Q Consensus 266 ~~k~~al~~ei~~Lqeel~al~~krdeay~~i 297 (520)
.++.+.+++++..|..++.++.++++.+.-.|
T Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 75 KKELKELKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444555555555555555555555554444
No 230
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=56.50 E-value=1.1e+02 Score=26.63 Aligned_cols=45 Identities=13% Similarity=0.364 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 254 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIK 298 (520)
Q Consensus 254 eldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~ 298 (520)
+++.+.+++..|+.+...+..+++.++...++++++=.++..+|+
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiD 69 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLD 69 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444444444444445555555555555555555555555443
No 231
>PHA03395 p10 fibrous body protein; Provisional
Probab=56.10 E-value=31 Score=30.08 Aligned_cols=13 Identities=23% Similarity=0.353 Sum_probs=5.5
Q ss_pred hhhHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWA 260 (520)
Q Consensus 248 Ld~lKkeldalr~ 260 (520)
++.|+...+.++.
T Consensus 20 VdalQ~~V~~l~~ 32 (87)
T PHA03395 20 VDALQAAVDDVRA 32 (87)
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444443
No 232
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=55.81 E-value=1.4e+02 Score=34.78 Aligned_cols=17 Identities=18% Similarity=0.487 Sum_probs=8.6
Q ss_pred chhhHHHHHHHHHHHHH
Q 009998 247 DLDGVKKESQAVWAKIS 263 (520)
Q Consensus 247 eLd~lKkeldalr~kIk 263 (520)
.|+.|+++...++..+.
T Consensus 567 ~l~~L~~En~~L~~~l~ 583 (722)
T PF05557_consen 567 TLEALQAENEDLLARLR 583 (722)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555443
No 233
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=55.09 E-value=1.1e+02 Score=25.67 Aligned_cols=46 Identities=17% Similarity=0.370 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKA 293 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdea 293 (520)
-..|.+.....+..|+.|+.+.......+..+...+..+....+.+
T Consensus 21 GekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 21 GEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESL 66 (74)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444443
No 234
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=55.03 E-value=1.9e+02 Score=27.39 Aligned_cols=106 Identities=11% Similarity=0.266 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHh
Q 009998 250 GVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA---YFFQYRALLNEAKAMSV 326 (520)
Q Consensus 250 ~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~---~f~~~r~~~~karela~ 326 (520)
..+..++.+-..++.+.+.+..+...+..+..+-.++...-+.+..+-..|..-.+.+.. +|-..-...+...--..
T Consensus 11 ~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln~p~~ 90 (157)
T PF04136_consen 11 QYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRLNSPGS 90 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcCCCC
Confidence 344455555555566666666666666666777777777777776666656555555444 44444333333322111
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHhCChHhHH
Q 009998 327 KKDVQGLKELSNSEVEKYMTLWNNNKAFRD 356 (520)
Q Consensus 327 ~~~v~el~~~~~~eve~fm~~wn~~~~FR~ 356 (520)
.-+..... -.-..++.-|.....+..|++
T Consensus 91 sV~~~~F~-~~L~~LD~cl~Fl~~h~~fke 119 (157)
T PF04136_consen 91 SVNSDSFK-PMLSRLDECLEFLEEHPNFKE 119 (157)
T ss_pred cccchHHH-HHHHHHHHHHHHHHHhhhhhh
Confidence 11111111 134566666666677777765
No 235
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=55.02 E-value=2.5e+02 Score=28.62 Aligned_cols=163 Identities=15% Similarity=0.207 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh---hHHHHHhhccchhhHHHH
Q 009998 178 ELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKED---IQDQVKLMGSDLDGVKKE 254 (520)
Q Consensus 178 EID~rI~~LE~~IqhgSLsL~EEKklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~---~~d~iK~l~~eLd~lKke 254 (520)
+-...|..||.++ |++.+-+..|-+.|..+..+.+.++..-..++.-+. +..-+- .|.++...
T Consensus 26 ~k~~~ie~LE~qL----------k~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~~Ls~als----~laev~~~ 91 (234)
T cd07665 26 EKLQEVECEEQRL----------RKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRALS----QLAEVEEK 91 (234)
T ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHH----HHHHHHHH
Confidence 3445567777776 688889999999999999988888776666655442 111111 13333333
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH------------HHHHHHHHHHHH
Q 009998 255 SQAVWAKISHL-EGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA------------YFFQYRALLNEA 321 (520)
Q Consensus 255 ldalr~kIkel-~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~------------~f~~~r~~~~ka 321 (520)
+..+......- .-.+...=++|-.+-.-+..+...|..+|..+..+...+..+.. .+.+....+..+
T Consensus 92 i~~~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~e~ 171 (234)
T cd07665 92 IEQLHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIAEW 171 (234)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 33333221111 11223334566677777888888888888888777655544333 333333333333
Q ss_pred HHH--HhccCHHHHHHHHHHHHHHHHHHHhCChHhHH
Q 009998 322 KAM--SVKKDVQGLKELSNSEVEKYMTLWNNNKAFRD 356 (520)
Q Consensus 322 rel--a~~~~v~el~~~~~~eve~fm~~wn~~~~FR~ 356 (520)
..- .++.+...+-..+..||++|-.- .-.+||.
T Consensus 172 e~k~~~a~~~fe~is~~ik~El~rFe~e--r~~Dfk~ 206 (234)
T cd07665 172 ESRVTQYERDFERISATVRKEVIRFEKE--KSKDFKN 206 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 222 22457888899999999999764 3455665
No 236
>PRK11546 zraP zinc resistance protein; Provisional
Probab=54.77 E-value=44 Score=31.63 Aligned_cols=43 Identities=21% Similarity=0.171 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 265 LEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 307 (520)
Q Consensus 265 l~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~ 307 (520)
|+.++.+-+.+++.|...-..=.+++..+..+|..||.++++.
T Consensus 66 LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~ 108 (143)
T PRK11546 66 LRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDEL 108 (143)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444433322222333444444444444444433
No 237
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=54.76 E-value=3.5e+02 Score=31.50 Aligned_cols=11 Identities=0% Similarity=0.072 Sum_probs=6.1
Q ss_pred cCCCCCCCccc
Q 009998 57 SNANLPKDVGE 67 (520)
Q Consensus 57 ~~~~~p~da~~ 67 (520)
+|.+||.+++.
T Consensus 295 tDVtp~P~~V~ 305 (652)
T COG2433 295 TDVTPAPETVK 305 (652)
T ss_pred ccCCCChHHHH
Confidence 46666655543
No 238
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=54.68 E-value=49 Score=25.31 Aligned_cols=35 Identities=23% Similarity=0.435 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 268 KVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 268 k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRk 302 (520)
-+..++..++.|..+.+.+..+.+.+-..+..|..
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443
No 239
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=54.53 E-value=1.7e+02 Score=26.68 Aligned_cols=45 Identities=16% Similarity=0.322 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 009998 275 EIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLN 319 (520)
Q Consensus 275 ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~ 319 (520)
.+..|..++..+...+..+-......+..++..-..|..-+..+.
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le 104 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLE 104 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344444444444444444444444444444444444444444443
No 240
>PRK10698 phage shock protein PspA; Provisional
Probab=53.90 E-value=1.8e+02 Score=29.21 Aligned_cols=84 Identities=12% Similarity=0.176 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHhhhhhhccccC
Q 009998 91 IRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSG 170 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~klre~~nArsk 170 (520)
|+..++.....+.+++.....+..+|...+.++..|..+.+....+.+ ++..++.+. +.
T Consensus 104 l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~---------------~~~~~~~~~------~~ 162 (222)
T PRK10698 104 LEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRD---------------VRRQLDSGK------LD 162 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHhCCC------cc
Confidence 444455555555555555555555555555555555555554433321 122222111 11
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCC
Q 009998 171 GICSSEEELDDLIRSLQYRIQHEII 195 (520)
Q Consensus 171 ~~f~SveEID~rI~~LE~~IqhgSL 195 (520)
..+.--+.++.+|.++|.+.+...+
T Consensus 163 ~a~~~f~rmE~ki~~~Ea~aea~~~ 187 (222)
T PRK10698 163 EAMARFESFERRIDQMEAEAESHGF 187 (222)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHhhc
Confidence 1233345678888888888876533
No 241
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=53.74 E-value=83 Score=27.43 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcC---CCCcHHH-HHHHHHHHHHHHHHH
Q 009998 180 DDLIRSLQYRIQHE---IIPLSEE-KQILREIKQLEGTRE 215 (520)
Q Consensus 180 D~rI~~LE~~Iqhg---SLsL~EE-KklLkEIk~Lkk~Rk 215 (520)
+.+|.+||..+..+ ...+.+| +.+..||+-|+.+-+
T Consensus 2 EdkI~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve 41 (86)
T PF12711_consen 2 EDKIKRLEKLLDGKLPSESYLEEENEALKEEIQLLREQVE 41 (86)
T ss_pred chHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHH
Confidence 35788888887433 3345566 778889998887644
No 242
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=52.97 E-value=4.1e+02 Score=30.60 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 009998 93 AKIDLTDREIQRRNQARMQLM 113 (520)
Q Consensus 93 akI~~a~keI~kl~q~R~~I~ 113 (520)
..|..-..+|+.+++.++.+.
T Consensus 301 ~Eie~kEeE~e~lq~~~d~Lk 321 (581)
T KOG0995|consen 301 SEIEEKEEEIEKLQKENDELK 321 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 243
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=52.44 E-value=3.4e+02 Score=29.40 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 009998 266 EGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYR 315 (520)
Q Consensus 266 ~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r 315 (520)
+.++.-+-.+|..++.++.++..+.+.+-..+..+..++.+++..+-+-+
T Consensus 265 N~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK 314 (359)
T PF10498_consen 265 NNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVK 314 (359)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444444444443333
No 244
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=52.23 E-value=1.7e+02 Score=25.89 Aligned_cols=42 Identities=17% Similarity=0.242 Sum_probs=30.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 009998 301 RKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVE 342 (520)
Q Consensus 301 Rke~de~n~~f~~~r~~~~karela~~~~v~el~~~~~~eve 342 (520)
+...++....|-.|+....++-+++..|+..+...++..++.
T Consensus 108 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 149 (181)
T PF12729_consen 108 KQLLEEFKEAWKAYRKLRDQVIELAKSGDNDEARAILNGEAR 149 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhHH
Confidence 334455555666777777888889999998888888887764
No 245
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=52.22 E-value=58 Score=28.49 Aligned_cols=14 Identities=36% Similarity=0.620 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHH
Q 009998 199 EEKQILREIKQLEG 212 (520)
Q Consensus 199 EEKklLkEIk~Lkk 212 (520)
|=+.++.||..|..
T Consensus 31 E~~~v~~EL~~l~~ 44 (105)
T cd00632 31 ENKKALEELEKLAD 44 (105)
T ss_pred HHHHHHHHHHcCCC
Confidence 33566777777753
No 246
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=51.67 E-value=1e+02 Score=27.30 Aligned_cols=61 Identities=18% Similarity=0.311 Sum_probs=37.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 245 GSDLDGVKKESQAVWAKISHLEGKVKAL--DEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 245 ~~eLd~lKkeldalr~kIkel~~k~~al--~~ei~~Lqeel~al~~krdeay~~i~~LRke~d 305 (520)
+.+++.+...++.....+..++.++..+ .+++..|+-++..+....+.+-..++.+..+.+
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666666666 666666666666666666666666666554443
No 247
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=51.58 E-value=1.9e+02 Score=26.22 Aligned_cols=49 Identities=14% Similarity=0.126 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCChHhHHHHHHHhHHHHhhhhhccCCCCCCCCCC
Q 009998 330 VQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEK 383 (520)
Q Consensus 330 v~el~~~~~~eve~fm~~wn~~~~FR~dY~k~~~~s~~~R~~~~DGR~~~pde~ 383 (520)
.+--...|..=.-+|...++.=-.-..+|..+. .....|+ -++.|||--
T Consensus 83 ~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~-k~~i~Rq----~~i~~~~~t 131 (151)
T cd00179 83 DRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERY-KERIQRQ----LEITGGEAT 131 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH----HHHcCCCCC
Confidence 334455566666677777666555555665555 3334444 245666543
No 248
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=51.49 E-value=1.2e+02 Score=28.37 Aligned_cols=62 Identities=21% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHH
Q 009998 94 KIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLH 155 (520)
Q Consensus 94 kI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq 155 (520)
.|+.+=..|+++.++.-...+.+...+.-...|..+|++|..+.-.+...++.|..-+.-|+
T Consensus 7 ~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLq 68 (134)
T PF15233_consen 7 QIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQ 68 (134)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
No 249
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=51.14 E-value=2e+02 Score=26.51 Aligned_cols=45 Identities=16% Similarity=0.279 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFA 295 (520)
Q Consensus 251 lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~ 295 (520)
++.++..+..++..+..+...+...+..+...+....+....+..
T Consensus 78 L~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 78 LKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333334444444333333333333333333
No 250
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=51.01 E-value=1e+02 Score=29.60 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 009998 275 EIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYF 311 (520)
Q Consensus 275 ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f 311 (520)
+...+.+++..+..+..++-.++..|++|-+....+|
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444455555555555555556666666665555543
No 251
>PHA03011 hypothetical protein; Provisional
Probab=50.34 E-value=1.3e+02 Score=27.19 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=37.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 009998 246 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 309 (520)
Q Consensus 246 ~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~ 309 (520)
+.+++++..++.++.+-+ .+.++++-+..+.+.+-..+++--++|--||.+.|....
T Consensus 57 GD~Nai~e~ldeL~~qYN-------~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~ 113 (120)
T PHA03011 57 GDINAIIEILDELIAQYN-------ELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKE 113 (120)
T ss_pred ccHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 346666666666666544 555555666666666667777777788888888876544
No 252
>PHA01750 hypothetical protein
Probab=50.29 E-value=1e+02 Score=25.79 Aligned_cols=6 Identities=50% Similarity=0.855 Sum_probs=2.4
Q ss_pred hHHHHH
Q 009998 237 IQDQVK 242 (520)
Q Consensus 237 ~~d~iK 242 (520)
+.+.++
T Consensus 32 lkdAvk 37 (75)
T PHA01750 32 LKDAVK 37 (75)
T ss_pred HHHHHH
Confidence 333443
No 253
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=49.59 E-value=2.7e+02 Score=27.57 Aligned_cols=33 Identities=15% Similarity=0.093 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhCChHhHHHHHHHhHHHHh
Q 009998 335 ELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLD 367 (520)
Q Consensus 335 ~~~~~eve~fm~~wn~~~~FR~dY~k~~~~s~~ 367 (520)
..+..++-.++..+-.-.+.|=.+.+.++|+..
T Consensus 185 ~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~a 217 (236)
T cd07651 185 EIWNREWKAALDDFQDLEEERIQFLKSNCWTFA 217 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666667778888887777654
No 254
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=49.34 E-value=1.8e+02 Score=25.36 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCChHhHHHH
Q 009998 331 QGLKELSNSEVEKYMTLWNNNKAFRDDY 358 (520)
Q Consensus 331 ~el~~~~~~eve~fm~~wn~~~~FR~dY 358 (520)
.+...|.+.||..||....+..++|.-|
T Consensus 58 ~e~~~lT~~E~~~ll~~~~~~~~~~~~~ 85 (86)
T PF12958_consen 58 PEPKDLTNDEFYELLEFLFHLPEVQEAL 85 (86)
T ss_pred hcchhcCHHHHHHHHHHHHcCHHHHHhh
Confidence 3466778999999999999988888755
No 255
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=49.33 E-value=3.4e+02 Score=28.50 Aligned_cols=30 Identities=13% Similarity=0.316 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 009998 280 QQEVNDVAEKRDKAFANIKELRKQRDEGNA 309 (520)
Q Consensus 280 qeel~al~~krdeay~~i~~LRke~de~n~ 309 (520)
..++.........+|....+|+....++.+
T Consensus 290 ~~~r~~~l~~L~~ay~~y~el~~~l~eG~~ 319 (342)
T cd08915 290 LDPREEALQDLEASYKKYLELKENLNEGSK 319 (342)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 444555555666666666666666666655
No 256
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=49.29 E-value=2.1e+02 Score=26.23 Aligned_cols=112 Identities=17% Similarity=0.215 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCH
Q 009998 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDV 330 (520)
Q Consensus 251 lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~karela~~~~v 330 (520)
+...++.+......+-...-++..++..+..++...+.....+......+..+++..+..| .--..+...+ ..+
T Consensus 32 ~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~-s~~~l~~~L~-----~~~ 105 (150)
T PF07200_consen 32 LQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNY-SPDALLARLQ-----AAA 105 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CHHHHHHHHH-----HHH
Confidence 3444444444444444444344444444444444444444444444444444444442211 1112222222 234
Q ss_pred HHHHHHHHHHHHHHHHHHhCChHhHHHHHHHhHHHHhh
Q 009998 331 QGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDM 368 (520)
Q Consensus 331 ~el~~~~~~eve~fm~~wn~~~~FR~dY~k~~~~s~~~ 368 (520)
.+.++.|..=++.|+.-=..-++|=+.|...-...-.|
T Consensus 106 ~e~eeeSe~lae~fl~g~~d~~~Fl~~f~~~R~~yH~R 143 (150)
T PF07200_consen 106 SEAEEESEELAEEFLDGEIDVDDFLKQFKEKRKLYHLR 143 (150)
T ss_dssp HHHHHHHHHHC-S-SSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 55666666666777643334456777776643333333
No 257
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=49.23 E-value=3e+02 Score=27.97 Aligned_cols=49 Identities=12% Similarity=0.142 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 009998 173 CSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKED 236 (520)
Q Consensus 173 f~SveEID~rI~~LE~~IqhgSLsL~EEKklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~ 236 (520)
++...++..+|..+..+ +..++.-.|--..+ .|....+.|...|.++-.
T Consensus 82 ls~laev~~~i~~~~~~------------qa~qd~~~f~e~l~---eYiRli~SVK~~f~~R~k 130 (234)
T cd07665 82 LSQLAEVEEKIEQLHQE------------QANNDFFLLAELLA---DYIRLLSAVRGAFDQRMK 130 (234)
T ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHHHHhhhHH---HHHHHHHHHHHHHHHHHH
Confidence 45566666666666544 33444444444422 233444445555555433
No 258
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=49.20 E-value=2.1e+02 Score=26.11 Aligned_cols=74 Identities=19% Similarity=0.293 Sum_probs=43.6
Q ss_pred hHHHHHhhccchhhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 237 IQDQVKLMGSDLDGVKKESQAVW-----------AKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 237 ~~d~iK~l~~eLd~lKkeldalr-----------~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~d 305 (520)
+...++.+.-.|.+|.++|+.+- ..+..++.-+..++..+..|+.-..-+..+.-+=|+.+..+.....
T Consensus 31 ~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~ 110 (132)
T PF10392_consen 31 ISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLE 110 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33344444444555555544332 1344455555666667777777777777777777777777777666
Q ss_pred HHhHH
Q 009998 306 EGNAY 310 (520)
Q Consensus 306 e~n~~ 310 (520)
..+.-
T Consensus 111 rl~~t 115 (132)
T PF10392_consen 111 RLHQT 115 (132)
T ss_pred HHHHH
Confidence 65543
No 259
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.11 E-value=4.7e+02 Score=30.15 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=9.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKV 269 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~ 269 (520)
...|+..+++++..+++....+
T Consensus 340 ~kdLkEkv~~lq~~l~eke~sl 361 (654)
T KOG4809|consen 340 NKDLKEKVNALQAELTEKESSL 361 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333
No 260
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=48.69 E-value=1.6e+02 Score=24.97 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 009998 288 EKRDKAFANIKELRKQRDEGNAYFFQY 314 (520)
Q Consensus 288 ~krdeay~~i~~LRke~de~n~~f~~~ 314 (520)
..|..+-.+|..|=+..+.+...+|..
T Consensus 50 ~~R~~L~~~l~~lv~~mE~K~dQI~~L 76 (79)
T PF06657_consen 50 RKRRDLEQELEELVKRMEAKADQIYKL 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555556666666665555555543
No 261
>smart00030 CLb CLUSTERIN Beta chain.
Probab=48.59 E-value=3e+02 Score=27.69 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=28.1
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhCChHhHHHHHHHhHHHHhhhhhccCCC
Q 009998 328 KDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGR 376 (520)
Q Consensus 328 ~~v~el~~~~~~eve~fm~~wn~~~~FR~dY~k~~~~s~~~R~~~~DGR 376 (520)
....+-+.+|+ +-+|++|- =-|--|.+||+|+-|+--|
T Consensus 71 ~kL~E~~~vCn---etm~alWe--------ECKpCLk~tCmkfYsr~Cr 108 (206)
T smart00030 71 EKLKESQGVCN---ETMMALWE--------ECKPCLKQTCMKFYARVCR 108 (206)
T ss_pred HHHHHHHHHHH---HHHHHHHH--------HhHHHHHHHHHHHHHHhcC
Confidence 44667788997 68999993 2345688999999885544
No 262
>PRK10698 phage shock protein PspA; Provisional
Probab=48.45 E-value=3e+02 Score=27.60 Aligned_cols=14 Identities=43% Similarity=0.584 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 009998 200 EKQILREIKQLEGT 213 (520)
Q Consensus 200 EKklLkEIk~Lkk~ 213 (520)
+|++=+++..+...
T Consensus 54 ~k~~er~~~~~~~~ 67 (222)
T PRK10698 54 KKQLTRRIEQAEAQ 67 (222)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 263
>PRK15396 murein lipoprotein; Provisional
Probab=48.25 E-value=1.2e+02 Score=26.05 Aligned_cols=45 Identities=16% Similarity=0.358 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 255 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKE 299 (520)
Q Consensus 255 ldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~ 299 (520)
++.|.+++..|..+...+..+++.+.....+++++=..+..+|+.
T Consensus 27 vd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 27 IDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444455555555555544444444443
No 264
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=48.23 E-value=4.7e+02 Score=29.86 Aligned_cols=13 Identities=31% Similarity=0.100 Sum_probs=7.6
Q ss_pred CCCCCHHHHHHHH
Q 009998 171 GICSSEEELDDLI 183 (520)
Q Consensus 171 ~~f~SveEID~rI 183 (520)
...+++++|...+
T Consensus 305 ~e~sk~eeL~~~L 317 (531)
T PF15450_consen 305 LEESKAEELATKL 317 (531)
T ss_pred HHHhhHHHHHHHH
Confidence 3456666666554
No 265
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=48.06 E-value=3.2e+02 Score=27.92 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 009998 174 SSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMA 219 (520)
Q Consensus 174 ~SveEID~rI~~LE~~IqhgSLsL~EEKklLkEIk~Lkk~Rk~v~a 219 (520)
..-+-+..+|+.++..|.+.|=+- | -|..|++.|..+..
T Consensus 147 ~kceam~lKLr~~~~~iL~~TYTp--e-----~v~Al~~Ir~~L~~ 185 (238)
T PF14735_consen 147 AKCEAMILKLRVLELEILSDTYTP--E-----TVPALRKIRDHLEE 185 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCH--H-----hHHHHHHHHHHHHH
Confidence 344567888999999999888872 2 36667777666543
No 266
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=47.94 E-value=6 Score=45.77 Aligned_cols=7 Identities=29% Similarity=0.321 Sum_probs=0.0
Q ss_pred CCccccC
Q 009998 63 KDVGEEW 69 (520)
Q Consensus 63 ~da~~~~ 69 (520)
.|-+|.|
T Consensus 297 rDElD~l 303 (713)
T PF05622_consen 297 RDELDEL 303 (713)
T ss_dssp -------
T ss_pred hhhHHHH
Confidence 3555555
No 267
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=47.89 E-value=3e+02 Score=27.59 Aligned_cols=16 Identities=19% Similarity=0.488 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHhcCC
Q 009998 179 LDDLIRSLQYRIQHEI 194 (520)
Q Consensus 179 ID~rI~~LE~~IqhgS 194 (520)
|...|..|+..|+..+
T Consensus 39 i~e~i~~Le~~l~~E~ 54 (247)
T PF06705_consen 39 IKEQIQKLEKALEAEV 54 (247)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 268
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=47.24 E-value=3e+02 Score=29.48 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=12.2
Q ss_pred HhccCHHHHHHHHHHHHH
Q 009998 325 SVKKDVQGLKELSNSEVE 342 (520)
Q Consensus 325 a~~~~v~el~~~~~~eve 342 (520)
.-.|++.+.+.+......
T Consensus 194 ~I~G~~~~A~~~~~~~~~ 211 (355)
T PF09766_consen 194 EIVGDEEEAKAFERQQEN 211 (355)
T ss_pred EEEecHHHHHHHHhcccc
Confidence 334888888887766543
No 269
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=47.13 E-value=4e+02 Score=28.80 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHH
Q 009998 117 RAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQ 156 (520)
Q Consensus 117 ~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~ 156 (520)
..+..+=+-|-.||..+.++.+..+..+.+...+.+.+..
T Consensus 255 ekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~ 294 (359)
T PF10498_consen 255 EKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASE 294 (359)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444445555555555555544444444444444433
No 270
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=46.97 E-value=3.7e+02 Score=29.21 Aligned_cols=62 Identities=15% Similarity=0.231 Sum_probs=43.3
Q ss_pred HhhHHHHHHHHhhhhhhccccCCCCCCHHHHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHHHHHHHHHHH
Q 009998 149 KEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEII--PLSEEKQILREIKQLEGTREKVMA 219 (520)
Q Consensus 149 kEik~Lq~~L~klre~~nArsk~~f~SveEID~rI~~LE~~IqhgSL--sL~EEKklLkEIk~Lkk~Rk~v~a 219 (520)
+.++.|...+..+. .+...+.+..++..|+..+...++ .-..=..++++++.|+.....+..
T Consensus 7 ~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~ 70 (364)
T TIGR00020 7 NRIEDLTSRLDTVR---------GSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEE 70 (364)
T ss_pred HHHHHHHHHHHHHH---------hhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555655555453 367889999999999999988876 344445777888888777655443
No 271
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=46.39 E-value=1.1e+02 Score=30.88 Aligned_cols=37 Identities=19% Similarity=0.348 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 265 LEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELR 301 (520)
Q Consensus 265 l~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LR 301 (520)
.++++..-+.++..|.+=+..++.+||+|..+++.|.
T Consensus 24 A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 24 ANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666677777777777777777777666
No 272
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=46.25 E-value=74 Score=25.02 Aligned_cols=43 Identities=28% Similarity=0.328 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009998 172 ICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGK 233 (520)
Q Consensus 172 ~f~SveEID~rI~~LE~~IqhgSLsL~EEKklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ 233 (520)
.+.|.+||..++++|+..++ +||..|++. |.+.+..|-++|++
T Consensus 6 k~ls~~eL~~rl~~LD~~ME-------------~Eieelr~R------Y~~KRqPIldAiea 48 (49)
T PF11629_consen 6 KFLSYEELQQRLASLDPEME-------------QEIEELRQR------YQAKRQPILDAIEA 48 (49)
T ss_dssp GGS-HHHHHHHHHHHHHHHH-------------HHHHHHHHH------HHHHHHHHHHHHTT
T ss_pred hhCCHHHHHHHHHhCCHHHH-------------HHHHHHHHH------HHHhhccHHHHHhc
Confidence 46799999999999999887 477777765 34567777766654
No 273
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=45.80 E-value=1e+02 Score=31.59 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=46.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELR 301 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LR 301 (520)
|.-|.++.|-.|.+..+|++++......+..|+.+++.+...=-++|++++=|.
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566889999999999999999999999999999999999888888888876654
No 274
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=45.76 E-value=3.1e+02 Score=27.15 Aligned_cols=40 Identities=13% Similarity=0.290 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHHHHH----------hcCCCCcHHHHHHHHHHHHHHH
Q 009998 173 CSSEEELDDLIRSLQYRI----------QHEIIPLSEEKQILREIKQLEG 212 (520)
Q Consensus 173 f~SveEID~rI~~LE~~I----------qhgSLsL~EEKklLkEIk~Lkk 212 (520)
..+++.||.-...++..+ .++.++-.+|--+..|...|..
T Consensus 126 ~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le~ 175 (191)
T PTZ00446 126 EINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKE 175 (191)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 447777776655554433 2232334566677777666654
No 275
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=45.73 E-value=2.8e+02 Score=29.83 Aligned_cols=82 Identities=20% Similarity=0.291 Sum_probs=45.8
Q ss_pred eccCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hhhhHHHHHHHHh
Q 009998 81 IRHRQYDDPK--IRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEG--------RQYKSVMDDKRKE 150 (520)
Q Consensus 81 VK~~rpDd~~--lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qq--------k~~r~~~~eK~kE 150 (520)
|.+..-+++. |..-|+.+-..+..+...-..+...-..++.....+..+|+.+...- ..|-..+++|...
T Consensus 116 v~L~~~~~p~e~i~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~K 195 (342)
T PF06632_consen 116 VKLKQVDNPAEVIRELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAK 195 (342)
T ss_dssp EE-EE-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3434444443 55566655555555544433344444445555566666665554433 4466788888888
Q ss_pred hHHHHHHHHhhh
Q 009998 151 MEPLHQALGKLR 162 (520)
Q Consensus 151 ik~Lq~~L~klr 162 (520)
|..|+..|..++
T Consensus 196 IR~lq~~L~~~~ 207 (342)
T PF06632_consen 196 IRELQRLLASAK 207 (342)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 888887776554
No 276
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=45.47 E-value=2.5e+02 Score=29.59 Aligned_cols=23 Identities=26% Similarity=0.560 Sum_probs=17.2
Q ss_pred hHHHHHHHHhhHHHHHHHHhhhh
Q 009998 141 KSVMDDKRKEMEPLHQALGKLRT 163 (520)
Q Consensus 141 r~~~~eK~kEik~Lq~~L~klre 163 (520)
.=++.+-++||+.|++.+.-+|.
T Consensus 116 QLALKEARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 116 QLALKEARKEIKQLKQVIETMRS 138 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777889999988876663
No 277
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=45.24 E-value=2.1e+02 Score=31.97 Aligned_cols=9 Identities=22% Similarity=0.589 Sum_probs=3.6
Q ss_pred CChHhHHHH
Q 009998 350 NNKAFRDDY 358 (520)
Q Consensus 350 ~~~~FR~dY 358 (520)
.+-.|+-.|
T Consensus 203 ~~a~W~P~Y 211 (525)
T TIGR02231 203 GNASWTPSY 211 (525)
T ss_pred CCCcEeeee
Confidence 333344444
No 278
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=44.81 E-value=1.8e+02 Score=33.61 Aligned_cols=58 Identities=21% Similarity=0.334 Sum_probs=47.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 247 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 304 (520)
Q Consensus 247 eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~ 304 (520)
||.++..+.+.+++.|.+++.++++++..|..-|-++-++...+..+--...+|+.+-
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n 151 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETN 151 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 4666777777788888888888888888888888888888888888888888887754
No 279
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=44.69 E-value=5.6e+02 Score=29.78 Aligned_cols=61 Identities=15% Similarity=0.293 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHhhhh
Q 009998 100 REIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRT 163 (520)
Q Consensus 100 keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~klre 163 (520)
.-|+.+...|+..-..++. .+.-+..++..+..+...++.....-...+..|...|.+|+.
T Consensus 4 e~l~qlq~Erd~ya~~lk~---e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~ 64 (617)
T PF15070_consen 4 ESLKQLQAERDQYAQQLKE---ESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKN 64 (617)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666665544443 233344444444445555555555555555666666665553
No 280
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=44.67 E-value=6.6e+02 Score=30.59 Aligned_cols=145 Identities=12% Similarity=0.228 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 009998 202 QILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDE------- 274 (520)
Q Consensus 202 klLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~~~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~------- 274 (520)
++=.|..+|...|.+...- +..+++....--+.+.++..+...+..++.+..++-.+.+++..++.....
T Consensus 390 qLr~elaql~a~r~q~eka---~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~ 466 (980)
T KOG0980|consen 390 QLRNELAQLLASRTQLEKA---QVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEE 466 (980)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5666667777776654431 111222222222233344444444555555555555555555444433222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhC-ChH
Q 009998 275 EIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNN-NKA 353 (520)
Q Consensus 275 ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~karela~~~~v~el~~~~~~eve~fm~~wn~-~~~ 353 (520)
+...|.+.+.++....+.+-.+-..+.+.++..-.+.-.. ..++..+ ++++.-+.+-+++++..+|...-+ |+.
T Consensus 467 ~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l---~~e~~~l--q~~~~~~~qs~~~~~~~l~~~l~~KD~~ 541 (980)
T KOG0980|consen 467 ENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALL---LIELEEL--QRTLSNLAQSHNNQLAQLEDLLKQKDRL 541 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 2333333333333333333333333333222222221111 1122222 345666777788899999887644 444
Q ss_pred h
Q 009998 354 F 354 (520)
Q Consensus 354 F 354 (520)
|
T Consensus 542 ~ 542 (980)
T KOG0980|consen 542 A 542 (980)
T ss_pred H
Confidence 4
No 281
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=44.54 E-value=4.2e+02 Score=28.22 Aligned_cols=84 Identities=17% Similarity=0.276 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHH----HHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhhHHHHHhhccchhhHHH
Q 009998 179 LDDLIRSLQYRIQHEIIPLSEEKQIL----REIKQLEGTREKVMA-NAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKK 253 (520)
Q Consensus 179 ID~rI~~LE~~IqhgSLsL~EEKklL----kEIk~Lkk~Rk~v~a-~~~~~akiq~s~~~ke~~~d~iK~l~~eLd~lKk 253 (520)
....+..|+..+.|..-.|.|=--+| ++.++-....+.+.. |..-.+++...++..+++++++-.+--+=--|+.
T Consensus 156 aesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQ 235 (305)
T PF14915_consen 156 AESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQ 235 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457788887777777765432222 222333333332222 2223566677777777766666543333333555
Q ss_pred HHHHHHHHH
Q 009998 254 ESQAVWAKI 262 (520)
Q Consensus 254 eldalr~kI 262 (520)
++++...+-
T Consensus 236 QLddA~~K~ 244 (305)
T PF14915_consen 236 QLDDAHNKA 244 (305)
T ss_pred HHHHHHHHH
Confidence 555555543
No 282
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=44.48 E-value=1.1e+02 Score=27.43 Aligned_cols=38 Identities=16% Similarity=0.298 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 263 SHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKEL 300 (520)
Q Consensus 263 kel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~L 300 (520)
..+.+++.+++..+..|-++..+|.-+-+.++..+..+
T Consensus 18 ~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 18 GQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444333
No 283
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=44.16 E-value=1.8e+02 Score=32.74 Aligned_cols=53 Identities=23% Similarity=0.354 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 009998 254 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFAN-IKELRKQRDE 306 (520)
Q Consensus 254 eldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~-i~~LRke~de 306 (520)
++.++|.++..+....+.+.++-..|+.....+..+++.+... ..+|..+++.
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~q 120 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQ 120 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHH
Confidence 3333444444444444455555555555555555555555432 3344444433
No 284
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=43.97 E-value=3.8e+02 Score=29.13 Aligned_cols=54 Identities=13% Similarity=0.041 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 009998 292 KAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMT 346 (520)
Q Consensus 292 eay~~i~~LRke~de~n~~f~~~r~~~~karela~~~~v~el~~~~~~eve~fm~ 346 (520)
++..++..|....+. +..|.+...++..+.+++...+-.++.+++..|+...-.
T Consensus 53 ~~~ke~~~l~~~v~~-~~~~~~~~~d~~~l~el~~~e~D~e~~~~a~~e~~~l~~ 106 (364)
T TIGR00020 53 AVIKERSSLEAVLDT-LEELKNSLEDLSELLELAVEEDDEETFNELDAELKALEK 106 (364)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 333444444444433 334556666666666665333335666666666655433
No 285
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=43.95 E-value=4e+02 Score=27.90 Aligned_cols=18 Identities=11% Similarity=0.266 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 009998 89 PKIRAKIDLTDREIQRRN 106 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~ 106 (520)
..+...+..++.++..+.
T Consensus 84 ~~l~~~~~~l~a~~~~l~ 101 (423)
T TIGR01843 84 AELESQVLRLEAEVARLR 101 (423)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 557777777766665543
No 286
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=43.94 E-value=2.2e+02 Score=32.52 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 271 ALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 271 al~~ei~~Lqeel~al~~krdeay~~i~~LRke~d 305 (520)
+...+++.|+.+.++.++....+...+...+++..
T Consensus 216 ~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~ 250 (555)
T TIGR03545 216 KIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLK 250 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33344555555555544444444444444444333
No 287
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=43.84 E-value=1.8e+02 Score=23.77 Aligned_cols=35 Identities=31% Similarity=0.489 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVND 285 (520)
Q Consensus 251 lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~a 285 (520)
++...-+...+|.+...+...+..+|..|..++..
T Consensus 23 vk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 23 VKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433
No 288
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=42.63 E-value=2.7e+02 Score=27.22 Aligned_cols=98 Identities=12% Similarity=0.274 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH----HHHHHHhhHHHHHHHHhhhhh
Q 009998 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSV----MDDKRKEMEPLHQALGKLRTT 164 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~----~~eK~kEik~Lq~~L~klre~ 164 (520)
..++..++.+...+.+++.....+..+|..++.++..|..+......+..-.... ..+-...++.+.+.+..+-..
T Consensus 101 ~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~ 180 (221)
T PF04012_consen 101 ERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEAR 180 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHH
Q ss_pred hccccCCCCCCHHHHHHHHHHHH
Q 009998 165 NNARSGGICSSEEELDDLIRSLQ 187 (520)
Q Consensus 165 ~nArsk~~f~SveEID~rI~~LE 187 (520)
..+..-... |...++.++..++
T Consensus 181 a~a~~el~~-~~~~~e~~l~~~~ 202 (221)
T PF04012_consen 181 AEASAELAD-SDQDLEAELEELE 202 (221)
T ss_pred HHHHHHhcc-CcccHHHHHHHhc
No 289
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=42.45 E-value=3.5e+02 Score=26.75 Aligned_cols=21 Identities=10% Similarity=0.077 Sum_probs=12.2
Q ss_pred CCHHHHHHHHHHHHHHHhcCC
Q 009998 174 SSEEELDDLIRSLQYRIQHEI 194 (520)
Q Consensus 174 ~SveEID~rI~~LE~~IqhgS 194 (520)
.+.+.|+.+|..+|...+...
T Consensus 166 ~~fer~e~ki~~~ea~aea~~ 186 (219)
T TIGR02977 166 ARFEQYERRVDELEAQAESYD 186 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 344556666666666665543
No 290
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=42.37 E-value=2.1e+02 Score=28.41 Aligned_cols=29 Identities=3% Similarity=0.040 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhCChHhHHHHHHHhHHH
Q 009998 337 SNSEVEKYMTLWNNNKAFRDDYEKRLLQS 365 (520)
Q Consensus 337 ~~~eve~fm~~wn~~~~FR~dY~k~~~~s 365 (520)
+..+++.+|..+..+.+.++....-+.--
T Consensus 149 ~~eei~~~i~~~~~~~~~~~~~~~~i~~~ 177 (215)
T PF07083_consen 149 IEEEIDDQIDKIKQDLEEIKAAKQAIEEK 177 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777666544433
No 291
>PHA03395 p10 fibrous body protein; Provisional
Probab=42.04 E-value=1.3e+02 Score=26.40 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 009998 258 VWAKISHLEGKVKALDEEIEAL 279 (520)
Q Consensus 258 lr~kIkel~~k~~al~~ei~~L 279 (520)
+|+-|+++.+++.+++..++.+
T Consensus 9 Ir~dIkavd~KVdalQ~~V~~l 30 (87)
T PHA03395 9 IRQDIKAVSDKVDALQAAVDDV 30 (87)
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 3333444444444444433333
No 292
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=42.02 E-value=70 Score=23.01 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 009998 198 SEEKQILREIKQLEGTREKVM 218 (520)
Q Consensus 198 ~EEKklLkEIk~Lkk~Rk~v~ 218 (520)
.||.+++.|..+|++.|+++.
T Consensus 1 adEqkL~sekeqLrrr~eqLK 21 (32)
T PF02344_consen 1 ADEQKLISEKEQLRRRREQLK 21 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHH
Confidence 489999999999999998754
No 293
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=41.96 E-value=3.4e+02 Score=26.39 Aligned_cols=58 Identities=16% Similarity=0.299 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 009998 269 VKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSV 326 (520)
Q Consensus 269 ~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~karela~ 326 (520)
...+..+...|..++..+..+...+-.++..|..+......+|......+..||.++.
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~~ 156 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLAV 156 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556666667777777777777777777877777777788888888888887764
No 294
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=41.69 E-value=1.9e+02 Score=31.76 Aligned_cols=25 Identities=12% Similarity=0.320 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 251 VKKESQAVWAKISHLEGKVKALDEE 275 (520)
Q Consensus 251 lKkeldalr~kIkel~~k~~al~~e 275 (520)
++.+++.++..+..+...+..++..
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~ 356 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKN 356 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444443333333333
No 295
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=41.54 E-value=4.4e+02 Score=27.61 Aligned_cols=58 Identities=17% Similarity=0.311 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~d 305 (520)
|...+.++..+..+++..++.+..+...+......+-.+..++-.+...+..++-..+
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~ 259 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVE 259 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666677777777777777777777777777777666665544
No 296
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=41.50 E-value=77 Score=33.53 Aligned_cols=26 Identities=12% Similarity=0.468 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 91 IRAKIDLTDREIQRRNQARMQLMDEL 116 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~R~~I~akl 116 (520)
++.++...+.++...+..-..+...|
T Consensus 20 m~~~L~~~~~~L~~k~~e~e~ll~~i 45 (344)
T PF12777_consen 20 MQEELEEKQPELEEKQKEAEELLEEI 45 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333333333
No 297
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=41.46 E-value=1.6e+02 Score=28.35 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 250 GVKKESQAVWAKISHLEGKVKALDEEIEALQQE 282 (520)
Q Consensus 250 ~lKkeldalr~kIkel~~k~~al~~ei~~Lqee 282 (520)
....++..++.+|+..+..+.+++++...|+++
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444444444444443
No 298
>PRK11546 zraP zinc resistance protein; Provisional
Probab=41.45 E-value=1.6e+02 Score=27.92 Aligned_cols=48 Identities=29% Similarity=0.243 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHhhh
Q 009998 115 ELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLR 162 (520)
Q Consensus 115 kl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~klr 162 (520)
+...+|.+-.....+|++|-.....=...+....+||..|+..|...|
T Consensus 62 ~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r 109 (143)
T PRK11546 62 QTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELR 109 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555444444556666677777777665443
No 299
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=41.38 E-value=5.5e+02 Score=28.70 Aligned_cols=93 Identities=18% Similarity=0.312 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhccchhhHHHH
Q 009998 175 SEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKE 254 (520)
Q Consensus 175 SveEID~rI~~LE~~IqhgSLsL~EEKklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~~~d~iK~l~~eLd~lKke 254 (520)
+++++..+...|.+ ||++++++++.|.+....+-.. |.+++.+
T Consensus 177 ~~~~~~~e~~~l~~----------eE~~L~q~lk~le~~~~~l~~~---------------------------l~e~~~~ 219 (447)
T KOG2751|consen 177 SEEDLLKELKNLKE----------EEERLLQQLEELEKEEAELDHQ---------------------------LKELEFK 219 (447)
T ss_pred chHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHH
Confidence 67777777666654 7889999999888887664421 1122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 255 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 304 (520)
Q Consensus 255 ldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~ 304 (520)
-..+..+-...-..+....-..-..++++++|..+|.-.-..++.|++.-
T Consensus 220 ~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ktN 269 (447)
T KOG2751|consen 220 AERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTN 269 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhh
Confidence 22232333333334444444556678999999999999999999998864
No 300
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=41.15 E-value=2e+02 Score=32.40 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 009998 278 ALQQEVNDVAEKRDKAFANIKEL 300 (520)
Q Consensus 278 ~Lqeel~al~~krdeay~~i~~L 300 (520)
.++.+...+..+++.+...+..|
T Consensus 113 ~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 113 ELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 301
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=40.63 E-value=5.9e+02 Score=28.83 Aligned_cols=71 Identities=21% Similarity=0.361 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 202 QILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQ 281 (520)
Q Consensus 202 klLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~~~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqe 281 (520)
+++.||++=+++ |..+..| ..++.+++...+++..++.++. .+..+-|.-|...-.....++-+||+
T Consensus 433 ry~~eiQqKnks---vsqclEm----dk~LskKeeeverLQ~lkgelE------kat~SALdlLkrEKe~~EqefLslqe 499 (527)
T PF15066_consen 433 RYMTEIQQKNKS---VSQCLEM----DKTLSKKEEEVERLQQLKGELE------KATTSALDLLKREKETREQEFLSLQE 499 (527)
T ss_pred HHHHHHHHhhhH---HHHHHHH----HHHhhhhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778777766 4444443 6677777766666665544443 11222233333333334445556666
Q ss_pred HHHH
Q 009998 282 EVND 285 (520)
Q Consensus 282 el~a 285 (520)
+++.
T Consensus 500 EfQk 503 (527)
T PF15066_consen 500 EFQK 503 (527)
T ss_pred HHHH
Confidence 6553
No 302
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=40.62 E-value=3.3e+02 Score=25.88 Aligned_cols=12 Identities=42% Similarity=0.803 Sum_probs=6.4
Q ss_pred hccCCCCCCCCCC
Q 009998 371 LSRDGRIRNPDEK 383 (520)
Q Consensus 371 ~~~DGR~~~pde~ 383 (520)
++-|| ..|-||+
T Consensus 113 l~~dg-~~Gldeq 124 (155)
T PF06810_consen 113 LDDDG-LKGLDEQ 124 (155)
T ss_pred eCCCc-cccHHHH
Confidence 34455 6665554
No 303
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=40.51 E-value=3.8e+02 Score=28.63 Aligned_cols=129 Identities=15% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhHHHHHHHHhhHHHHHHHHhhhhhhccccCCCCC
Q 009998 99 DREIQRRNQARMQLMDELRAKRVIRGDLAAQL----RSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICS 174 (520)
Q Consensus 99 ~keI~kl~q~R~~I~akl~~~r~~R~eL~~qL----kaLr~qqk~~r~~~~eK~kEik~Lq~~L~klre~~nArsk~~f~ 174 (520)
+-.|..++.-+..|-.+++....-...|..++ .-+-+..+.+++.+..-+.+++.++..+..+++..++-+.+.-+
T Consensus 226 R~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~ 305 (384)
T KOG0972|consen 226 RLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSS 305 (384)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhccch
Q 009998 175 SEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDL 248 (520)
Q Consensus 175 SveEID~rI~~LE~~IqhgSLsL~EEKklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~~~d~iK~l~~eL 248 (520)
-.+.|+ .++-||.+++..-+.=++-+.-=+.+++.......+.+..-.++.+|
T Consensus 306 rT~~L~---------------------eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~et~~mnv~i 358 (384)
T KOG0972|consen 306 RTETLD---------------------EVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQTMNVQI 358 (384)
T ss_pred HHHHHH---------------------HHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhhhhe
No 304
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=40.43 E-value=2.1e+02 Score=23.68 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009998 90 KIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTE 136 (520)
Q Consensus 90 ~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~q 136 (520)
.+..+|+.+-.....+......+...+.....+|..|++++...++.
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~r 50 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777776776666667777776777777666666655443
No 305
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=40.28 E-value=3.8e+02 Score=26.48 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQE 282 (520)
Q Consensus 251 lKkeldalr~kIkel~~k~~al~~ei~~Lqee 282 (520)
+.+++..+++.-..+..++..+..+++.|...
T Consensus 98 ~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 98 LEKELKDLKWEHEVLEQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333444444444444444333
No 306
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=40.15 E-value=8.2e+02 Score=30.35 Aligned_cols=72 Identities=17% Similarity=0.076 Sum_probs=42.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhCChHhHHHHHHHhHHHHhhhhhccCCCC
Q 009998 306 EGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRI 377 (520)
Q Consensus 306 e~n~~f~~~r~~~~karela~~~~v~el~~~~~~eve~fm~~wn~~~~FR~dY~k~~~~s~~~R~~~~DGR~ 377 (520)
+....||+.....-+...-........+...|.+.-..|-+.-+..+.+=.+|.+-....+.+-..+.|+.+
T Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~~~q~~~e~~~~~~ 789 (1041)
T KOG0243|consen 718 ELTSTFFQTLDNQAEKLTNLFSEANISLSQKLSSFQKKFESIAEDEKQLVEDIKELLSSHDQRNNELLDIAL 789 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555554433333333444555666666666666665556667888888866666666666666554
No 307
>PLN02320 seryl-tRNA synthetase
Probab=40.00 E-value=1.3e+02 Score=34.07 Aligned_cols=13 Identities=15% Similarity=0.013 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 009998 204 LREIKQLEGTREK 216 (520)
Q Consensus 204 LkEIk~Lkk~Rk~ 216 (520)
|.+|-.|...+..
T Consensus 92 vd~l~~ld~~~r~ 104 (502)
T PLN02320 92 LELVLELYENMLA 104 (502)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555554443
No 308
>PRK14127 cell division protein GpsB; Provisional
Probab=39.86 E-value=1.6e+02 Score=26.62 Aligned_cols=45 Identities=20% Similarity=0.241 Sum_probs=28.3
Q ss_pred Cccccceee-eccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 72 PRVIHNFYF-IRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDEL 116 (520)
Q Consensus 72 ~~~~~~~yf-VK~~rpDd~~lkakI~~a~keI~kl~q~R~~I~akl 116 (520)
|..|+..-| ..++-||-+++..=++..-..+..+......+.+++
T Consensus 8 p~DI~~KeF~~~~RGYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~ 53 (109)
T PRK14127 8 PKDILEKEFKTSMRGYDQDEVDKFLDDVIKDYEAFQKEIEELQQEN 53 (109)
T ss_pred HHHHhhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666555 455689998888888877776666654444333333
No 309
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.79 E-value=6e+02 Score=28.68 Aligned_cols=28 Identities=11% Similarity=0.184 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 265 LEGKVKALDEEIEALQQEVNDVAEKRDK 292 (520)
Q Consensus 265 l~~k~~al~~ei~~Lqeel~al~~krde 292 (520)
+.+...+++.+++++.+.++--++..|+
T Consensus 408 il~etreLqkq~ns~se~L~Rsfavtde 435 (521)
T KOG1937|consen 408 ILEETRELQKQENSESEALNRSFAVTDE 435 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3334455666666666666555555544
No 310
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=39.77 E-value=5.7e+02 Score=28.49 Aligned_cols=10 Identities=40% Similarity=0.714 Sum_probs=4.4
Q ss_pred hhhhccCCCC
Q 009998 368 MRQLSRDGRI 377 (520)
Q Consensus 368 ~R~~~~DGR~ 377 (520)
+|..+-||-+
T Consensus 141 ~r~~s~~ga~ 150 (459)
T KOG0288|consen 141 LRRQSVDGAV 150 (459)
T ss_pred hhhhhhcCCC
Confidence 3344445544
No 311
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=39.76 E-value=4.8e+02 Score=27.56 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 255 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKR 290 (520)
Q Consensus 255 ldalr~kIkel~~k~~al~~ei~~Lqeel~al~~kr 290 (520)
++.+-.....|..++..-+.++..+++.+.++...|
T Consensus 128 Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiR 163 (338)
T KOG3647|consen 128 LNNVASDEAALGSKIERRKAELERTRKRLEALQSIR 163 (338)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333333333333333333333333344443333333
No 312
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=39.27 E-value=2.2e+02 Score=31.18 Aligned_cols=77 Identities=18% Similarity=0.381 Sum_probs=50.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHH
Q 009998 85 QYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRVI------RGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQAL 158 (520)
Q Consensus 85 rpDd~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~------R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L 158 (520)
-++-+.+..++..+..++..++.....|...+...... -.+....+..+......+...+.....++..|++.+
T Consensus 326 g~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l 405 (451)
T PF03961_consen 326 GVDRPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEEL 405 (451)
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45558899999999999988888877777776655432 123445555555555566666666666666666666
Q ss_pred Hhh
Q 009998 159 GKL 161 (520)
Q Consensus 159 ~kl 161 (520)
...
T Consensus 406 ~~~ 408 (451)
T PF03961_consen 406 ERS 408 (451)
T ss_pred Hhh
Confidence 543
No 313
>PHA03011 hypothetical protein; Provisional
Probab=39.18 E-value=2.5e+02 Score=25.40 Aligned_cols=29 Identities=14% Similarity=0.160 Sum_probs=11.9
Q ss_pred hHHHHHhhccchhhHHHHHHHHHHHHHHH
Q 009998 237 IQDQVKLMGSDLDGVKKESQAVWAKISHL 265 (520)
Q Consensus 237 ~~d~iK~l~~eLd~lKkeldalr~kIkel 265 (520)
+.+.+..+.+..++|-.+.+-+...++.+
T Consensus 62 i~e~ldeL~~qYN~L~dEYn~i~Ne~k~~ 90 (120)
T PHA03011 62 IIEILDELIAQYNELLDEYNLIENEIKDL 90 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433333
No 314
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=38.56 E-value=4.1e+02 Score=26.47 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhcCCCCc
Q 009998 179 LDDLIRSLQYRIQHEIIPL 197 (520)
Q Consensus 179 ID~rI~~LE~~IqhgSLsL 197 (520)
+...|..|+.+.+.+..+|
T Consensus 173 lQ~qv~~Lq~q~~~~~~~l 191 (192)
T PF11180_consen 173 LQRQVRQLQRQANEPIPSL 191 (192)
T ss_pred HHHHHHHHHHHhcCCCCCC
Confidence 5555666666666555443
No 315
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=38.43 E-value=4.4e+02 Score=26.72 Aligned_cols=155 Identities=17% Similarity=0.221 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh---hHHHHHhhccchhhHHH
Q 009998 177 EELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKED---IQDQVKLMGSDLDGVKK 253 (520)
Q Consensus 177 eEID~rI~~LE~~IqhgSLsL~EEKklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~---~~d~iK~l~~eLd~lKk 253 (520)
+++..-|..||.++ |++.+-+..|-+.|+.+..+.+.++..-..++.-+. +..-+- .+.++-.
T Consensus 25 ~~~k~yi~~Le~~L----------k~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~~ls~~l~----~laev~~ 90 (234)
T cd07664 25 EEKQQQFENLDQQL----------RKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALS----QLAEVEE 90 (234)
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchHHHHHH----HHHHHHH
Confidence 35556677777777 688889999999999999887777665555554321 111111 1222333
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------------HHHHHHHHHH
Q 009998 254 ESQAVWAKISHL-EGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAY------------FFQYRALLNE 320 (520)
Q Consensus 254 eldalr~kIkel-~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~------------f~~~r~~~~k 320 (520)
.+..+....... .-.+...=++|-.+-.-...+...|..+|..+..+...+..+... +.+....++.
T Consensus 91 ki~~~~~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~~ 170 (234)
T cd07664 91 KIDQLHQDQAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYANKPDKLQQAKDEIKE 170 (234)
T ss_pred HHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHH
Confidence 333322211110 111222334555666667777777777777776665555433332 2233334433
Q ss_pred HHHHH--hccCHHHHHHHHHHHHHHHH
Q 009998 321 AKAMS--VKKDVQGLKELSNSEVEKYM 345 (520)
Q Consensus 321 arela--~~~~v~el~~~~~~eve~fm 345 (520)
+..-+ +..+...+-.....||++|-
T Consensus 171 ~e~~~~~a~~~fe~Is~~~k~El~rFe 197 (234)
T cd07664 171 WEAKVQQGERDFEQISKTIRKEVGRFE 197 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322 24578888889999999994
No 316
>COG5293 Predicted ATPase [General function prediction only]
Probab=38.33 E-value=6.4e+02 Score=28.61 Aligned_cols=96 Identities=17% Similarity=0.126 Sum_probs=39.0
Q ss_pred HHHHHhhccchhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 009998 238 QDQVKLMGSDLDGVKKESQAVWAKISHLEGKVK--ALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYR 315 (520)
Q Consensus 238 ~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~--al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r 315 (520)
++.++.+.+.|.++..+++.+-.+..+.-.-++ -.-.+|..|+++.-+......++.-.|..|++- .+.+++.
T Consensus 341 ~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~elae~~~rie~l~k~-----~~~~~~i 415 (591)
T COG5293 341 QEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGELAELEYRIEPLRKL-----HALDQYI 415 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHH-----HHHHHHH
Confidence 334444444444444444444433333222221 112345555555555554444444444444331 1222332
Q ss_pred HHHHHHHHHHhccCHHHHHHHHH
Q 009998 316 ALLNEAKAMSVKKDVQGLKELSN 338 (520)
Q Consensus 316 ~~~~karela~~~~v~el~~~~~ 338 (520)
..++.-=--.....-.+.+++|.
T Consensus 416 ~~lkhe~l~~~~r~y~e~q~q~~ 438 (591)
T COG5293 416 GTLKHECLDLEERIYTEVQQQCS 438 (591)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Confidence 22222111122345566777765
No 317
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=38.30 E-value=4.9e+02 Score=27.55 Aligned_cols=100 Identities=18% Similarity=0.186 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHhhhhhhccc
Q 009998 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNAR 168 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~klre~~nAr 168 (520)
-.++..+.+++....+..-...+|.+.-..+.=+-.-|...|..+-+...+++-.+.+|..+++.++..+..|+..
T Consensus 80 r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e---- 155 (302)
T PF09738_consen 80 RDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREE---- 155 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 4678888888888877776666666665555555566666666666666666666777777777777777666542
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCCCcHH
Q 009998 169 SGGICSSEEELDDLIRSLQYRIQHEIIPLSE 199 (520)
Q Consensus 169 sk~~f~SveEID~rI~~LE~~IqhgSLsL~E 199 (520)
.+++...|...+..|+--.|-|+.
T Consensus 156 -------~~~Lre~L~~rdeli~khGlVlv~ 179 (302)
T PF09738_consen 156 -------LDELREQLKQRDELIEKHGLVLVP 179 (302)
T ss_pred -------HHHHHHHHHHHHHHHHHCCeeeCC
Confidence 456666777777766654444443
No 318
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=38.30 E-value=7e+02 Score=29.06 Aligned_cols=63 Identities=19% Similarity=0.106 Sum_probs=29.0
Q ss_pred eeeccC-CCCchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 009998 79 YFIRHR-QYDDPKIRAKIDLTDREIQRRN---QARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYK 141 (520)
Q Consensus 79 yfVK~~-rpDd~~lkakI~~a~keI~kl~---q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r 141 (520)
++|.+. .-.||.+-+.|..+-.+.---. ..+........-+..+-.++..+|.....+...|+
T Consensus 155 ~ii~Is~~~~dP~~Aa~iaN~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk 221 (754)
T TIGR01005 155 RIIAIEFRSEDPKLAAAIPDAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYR 221 (754)
T ss_pred EEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443 4556888887776554432211 11111222223334455555555555554444444
No 319
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=37.91 E-value=2e+02 Score=30.14 Aligned_cols=59 Identities=19% Similarity=0.254 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFA----NIKELRKQRDEGNA 309 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~----~i~~LRke~de~n~ 309 (520)
|+.+-..++.++. .+...+...-++++.|-.++..|+.++-.+.. .-..|+++||.+-.
T Consensus 143 ~n~~~~~L~~~~~---~~~~~i~~~V~~iN~ll~~Ia~lN~~I~~~~~~~g~~~n~L~DqRD~ll~ 205 (322)
T TIGR02492 143 FNQTSNELQDLRK---GINAEIKSAVTEINSLLKQIASLNKEIQQVEAKSGQDANDLLDQRDLLLK 205 (322)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHhHHHHHHHHH
Confidence 4445555555554 33344555555667777777777777765443 34578888777544
No 320
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=37.62 E-value=4.2e+02 Score=26.29 Aligned_cols=163 Identities=17% Similarity=0.214 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh---hHHHHHhhccchhhHHHH
Q 009998 178 ELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKED---IQDQVKLMGSDLDGVKKE 254 (520)
Q Consensus 178 EID~rI~~LE~~IqhgSLsL~EEKklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~---~~d~iK~l~~eLd~lKke 254 (520)
+....|..||.++ |++.+-+..|-+.|+.+....+.++.--..++.-+. +..-+.. +.++-..
T Consensus 16 ~~k~~i~~Le~~L----------k~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~E~~~~Ls~al~~----la~~~~k 81 (224)
T cd07623 16 EKQQQIENLDQQL----------RKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEEHTSLSRALSQ----LAEVEEK 81 (224)
T ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHH----HHHHHHH
Confidence 3444566666665 567778888888999888877766665555544332 1111111 2222222
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------------HHHHHHHHHHH
Q 009998 255 SQAVWAK-ISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAY------------FFQYRALLNEA 321 (520)
Q Consensus 255 ldalr~k-Ikel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~------------f~~~r~~~~ka 321 (520)
+..+... -..-.-.+...=.+|-.+..-...+...|..++..++.+...+..+... +.+...++..+
T Consensus 82 i~~~~~~qa~~d~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~ 161 (224)
T cd07623 82 IEQLHGEQADTDFYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEW 161 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 2222221 0111112222333455556666667777777776665555544443332 44444555444
Q ss_pred HHHH--hccCHHHHHHHHHHHHHHHHHHHhCChHhHH
Q 009998 322 KAMS--VKKDVQGLKELSNSEVEKYMTLWNNNKAFRD 356 (520)
Q Consensus 322 rela--~~~~v~el~~~~~~eve~fm~~wn~~~~FR~ 356 (520)
..-+ ++.+...+-..+..|+.+|..-.. .+||.
T Consensus 162 e~~~~~a~~~fe~is~~~k~El~rF~~erv--~dfk~ 196 (224)
T cd07623 162 EAKVDRGQKEFEEISKTIKKEIERFEKNRV--KDFKD 196 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 3332 245888899999999999976543 34554
No 321
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=37.50 E-value=5.7e+02 Score=27.85 Aligned_cols=54 Identities=13% Similarity=0.063 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Q 009998 294 FANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLW 348 (520)
Q Consensus 294 y~~i~~LRke~de~n~~f~~~r~~~~karela~~~~v~el~~~~~~eve~fm~~w 348 (520)
..++..|....+. +..|......+..+.+++...+-.++.+++..|+..+....
T Consensus 55 ~ke~~~L~~iv~~-~~~l~~~~~e~~~~~ell~~e~D~el~~~a~~e~~~l~~~l 108 (367)
T PRK00578 55 TKELSSLKAKLDT-LEELRQRLDDLEELLELAEEEDDEETLAEAEAELKALEKKL 108 (367)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 3444444433332 33355555666666666644333567777777776655544
No 322
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=37.34 E-value=1.1e+02 Score=32.19 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 250 GVKKESQAVWAKISHLEGKVKALDEEIEALQQEVN 284 (520)
Q Consensus 250 ~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~ 284 (520)
.|+..+...+++|..|+.++++++.++..++++.+
T Consensus 142 ~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid 176 (308)
T PF06717_consen 142 QIEDEYNRKKNKIPGLNKQISALDKQIVAINKKID 176 (308)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433
No 323
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=37.08 E-value=5.3e+02 Score=27.27 Aligned_cols=19 Identities=16% Similarity=0.538 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009998 201 KQILREIKQLEGTREKVMA 219 (520)
Q Consensus 201 KklLkEIk~Lkk~Rk~v~a 219 (520)
+.+|.++..|+..|..+..
T Consensus 194 r~~l~~l~~lk~eR~~~~~ 212 (339)
T cd09235 194 RQLMEQVETIKAEREVIES 212 (339)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777643
No 324
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=37.00 E-value=5.3e+02 Score=27.23 Aligned_cols=212 Identities=14% Similarity=0.107 Sum_probs=0.0
Q ss_pred eeeccCCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH-HHHHhhHHHHH
Q 009998 79 YFIRHRQYD-DPKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMD-DKRKEMEPLHQ 156 (520)
Q Consensus 79 yfVK~~rpD-d~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~-eK~kEik~Lq~ 156 (520)
|-.++|... -..++..|.....-+......=..|..++..-+.--.-|..-+..|.+..=....... .--..+..|+.
T Consensus 116 ~G~~~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~l~~~~~~~~~~l~lL~~~~~~l~~~iPs~~~~~~~~~~~~v~~Lr~ 195 (337)
T cd09234 116 VGKRGSSIAHVTELKRELKKYKEAHEKASQSNTELHKAMNLHIANLKLLAGPLDELQKKLPSPSLLDRPEDEAIEKELKR 195 (337)
T ss_pred cCCCCCchhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHhhCCCccccCCcccHHHHHHHHH
Q ss_pred HHHhhhhhhccccCCCCCCHHHHHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 009998 157 ALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIP--LSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKK 234 (520)
Q Consensus 157 ~L~klre~~nArsk~~f~SveEID~rI~~LE~~IqhgSLs--L~EEKklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~k 234 (520)
.++++....+.|... +..|...+..-.|+ |.-...- ++..|=.. .+..|-..+..|.+++...
T Consensus 196 ll~kl~~lk~eR~~l-----------~~~Lk~k~~~DDI~~~ll~~~~~--~~e~lf~~--eL~k~~~~~~~l~~~~~~Q 260 (337)
T cd09234 196 ILNKVNEMRKQRRSL-----------EQQLRDAIHEDDITSKLVTTTGG--DMEDLFKE--ELKKHDQLVNLIEQNLAAQ 260 (337)
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHhhcCCchHHHHHhcch--hHHHHHHH--HHHHhhhHHHHHHHHHHHH
Q ss_pred hhhHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 235 EDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 235 e~~~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~d 305 (520)
+.+..+|......+...++..+....+....-..+......|..|..-++.-..=-+.+...+..|+....
T Consensus 261 ~~ll~~i~~an~~f~~~r~~~~~~~~~Re~~l~~L~~ay~~y~el~~~l~eG~~FY~dL~~~v~~~~~~~~ 331 (337)
T cd09234 261 ENILKALTEANAKYAPVRKALSETKQKRESTISSLIASYEAYEDLLKKSQKGIDFYKKLEGNVSKLLQRIK 331 (337)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
No 325
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=36.98 E-value=4.8e+02 Score=30.06 Aligned_cols=85 Identities=16% Similarity=0.223 Sum_probs=55.0
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHh
Q 009998 239 DQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAF----------ANIKELRKQRDEGN 308 (520)
Q Consensus 239 d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay----------~~i~~LRke~de~n 308 (520)
.+++.+...++.+..-.+.+..++.........+-.+...|+.+.+.+..+++-+- .+...|+......+
T Consensus 45 ~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f~Ls~~E~~~L~~~~~~v~ 124 (618)
T PF06419_consen 45 RQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERFTLSEEEEDALTSGEEPVD 124 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCCCC
Confidence 34445555566667777777777777766677777777777777777766666542 34455666545677
Q ss_pred HHHHHHHHHHHHHHH
Q 009998 309 AYFFQYRALLNEAKA 323 (520)
Q Consensus 309 ~~f~~~r~~~~kare 323 (520)
..||.--....+.++
T Consensus 125 ~~FF~~L~r~~~I~~ 139 (618)
T PF06419_consen 125 DEFFDALDRVQKIHE 139 (618)
T ss_pred HHHHHHHHHHHHHHH
Confidence 788876666555543
No 326
>PTZ00464 SNF-7-like protein; Provisional
Probab=36.42 E-value=4.5e+02 Score=26.31 Aligned_cols=28 Identities=18% Similarity=0.428 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 89 PKIRAKIDLTDREIQRRNQARMQLMDEL 116 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~akl 116 (520)
..+..++..+++.|.++.......+..+
T Consensus 21 ~~l~~r~~~l~kKi~~ld~E~~~ak~~~ 48 (211)
T PTZ00464 21 KRIGGRSEVVDARINKIDAELMKLKEQI 48 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666666666555444443333
No 327
>PRK14160 heat shock protein GrpE; Provisional
Probab=36.19 E-value=2.3e+02 Score=28.55 Aligned_cols=48 Identities=23% Similarity=0.246 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 009998 277 EALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAM 324 (520)
Q Consensus 277 ~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~karel 324 (520)
..|+.+...+......+-..+..|+.++-...++|-+||+...+-++.
T Consensus 57 ~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~ 104 (211)
T PRK14160 57 EELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEG 104 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555555556666777777666554443
No 328
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=35.83 E-value=4.7e+02 Score=26.26 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 249 DGVKKESQAVWAKISHLEGKVKA-LDEEIEALQQEVNDVAEKRDKAFAN 296 (520)
Q Consensus 249 d~lKkeldalr~kIkel~~k~~a-l~~ei~~Lqeel~al~~krdeay~~ 296 (520)
.+|+..++.+......-.+.|.. +-+++..|...+..-.+.|-...+.
T Consensus 178 ~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~R~~~Dd~ 226 (247)
T PF06705_consen 178 SELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQEREQSDDD 226 (247)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 33444444444333333334433 3444444444444444444444333
No 329
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=35.78 E-value=2.8e+02 Score=23.67 Aligned_cols=88 Identities=18% Similarity=0.268 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Q 009998 249 DGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKK 328 (520)
Q Consensus 249 d~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~karela~~~ 328 (520)
..|...+..++.++..+...+..+...+..+......+...+...| ..|+.-+++....+...-......+...-..
T Consensus 3 ~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f---~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~ 79 (127)
T smart00502 3 EALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAF---DELRNALNKRKKQLLEDLEEQKENKLKVLEQ 79 (127)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CHHHHHHHHHH
Q 009998 329 DVQGLKELSNS 339 (520)
Q Consensus 329 ~v~el~~~~~~ 339 (520)
....++..+..
T Consensus 80 q~~~l~~~l~~ 90 (127)
T smart00502 80 QLESLTQKQEK 90 (127)
T ss_pred HHHHHHHHHHH
No 330
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=35.71 E-value=3e+02 Score=23.99 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 009998 207 IKQLEGTREKVMANAAMRAKIQESM 231 (520)
Q Consensus 207 Ik~Lkk~Rk~v~a~~~~~akiq~s~ 231 (520)
+.+++.++.++..+...+..+...+
T Consensus 5 ~~~~q~l~~~~~~l~~~~~~l~~~~ 29 (105)
T cd00632 5 LAQLQQLQQQLQAYIVQRQKVEAQL 29 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333333333333
No 331
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=35.50 E-value=83 Score=35.24 Aligned_cols=44 Identities=14% Similarity=0.236 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 261 KISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 304 (520)
Q Consensus 261 kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~ 304 (520)
+.+++++++.+++.+...+..++.....+++++-..+..|+.+.
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433333333444444444444444444444443
No 332
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=35.42 E-value=6.7e+02 Score=27.98 Aligned_cols=83 Identities=22% Similarity=0.250 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhCChHhHHHHHHH
Q 009998 285 DVAEKRDKAFANIKELRKQRDEGN---AYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKR 361 (520)
Q Consensus 285 al~~krdeay~~i~~LRke~de~n---~~f~~~r~~~~karela~~~~v~el~~~~~~eve~fm~~wn~~~~FR~dY~k~ 361 (520)
-+...|=....+|.+|+.+.-+.. ..+..-|+.++-+..++.....-.+..+.-.+|..-|..=+. +-++..
T Consensus 87 ~~en~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~~r~~e~la~~~~~l~~~~~r~~s~~ga~~~~~~-----d~~v~~ 161 (459)
T KOG0288|consen 87 IAENLRIRSLNEIRELREQKAEFENAELALREMRRKMRIAERLAEALKDLGLKDLRRQSVDGAVPRTED-----DHFVED 161 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHhhhcchhhhhhhhhcCCCccccC-----chhhhc
Confidence 334444455666777776654433 356666777777777766655556666777777777766443 456677
Q ss_pred hHHHHhhhhhc
Q 009998 362 LLQSLDMRQLS 372 (520)
Q Consensus 362 ~~~s~~~R~~~ 372 (520)
-++|.+-+-+.
T Consensus 162 ~lpS~~~~~ld 172 (459)
T KOG0288|consen 162 TLPSRALFVLD 172 (459)
T ss_pred ccchhhhhhhh
Confidence 77777665443
No 333
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=35.38 E-value=1.5e+02 Score=34.09 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 275 EIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 275 ei~~Lqeel~al~~krdeay~~i~~LRke~de 306 (520)
.+..|..++.++....+.+|.++-+|-.++.+
T Consensus 599 ~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~ 630 (638)
T PRK10636 599 ELTACLQQQASAKSGLEECEMAWLEAQEQLEQ 630 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555544433
No 334
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=35.36 E-value=1.4e+02 Score=25.68 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=24.1
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 84 RQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRVI 122 (520)
Q Consensus 84 ~rpDd~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~ 122 (520)
++++-+.....+..|+.+|+.+...+..+...+...+.+
T Consensus 61 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 99 (104)
T PF13600_consen 61 PEPEKESDSPELKELEEELEALEDELAALQDEIQALEAQ 99 (104)
T ss_pred CccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555677777777777777766666666554443
No 335
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=35.17 E-value=6.3e+02 Score=29.69 Aligned_cols=79 Identities=11% Similarity=0.219 Sum_probs=44.4
Q ss_pred hhhhhHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhH
Q 009998 233 KKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFA---NIKELRKQRDEGNA 309 (520)
Q Consensus 233 ~ke~~~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~---~i~~LRke~de~n~ 309 (520)
.+.....+.+.+-..|+.+-..++.++. .+..++...-.+|+.|-+++..|+.++-.+.. .-+.|+++||.+-.
T Consensus 128 aRq~vl~~A~~La~~fn~~~~~L~~l~~---~vn~qI~~~V~~IN~l~~qIA~LN~qI~~~~~~G~~~NdLlDqRD~Ll~ 204 (676)
T PRK05683 128 ARQLLLTQAQGLSKRFNSLSSQLNQQNS---NINSQLSAMTDQVNNLTTSIASYNKQIAQASASGATPNDLLDARDEAVR 204 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHhHHHHHHHHH
Confidence 3334444444444445555556655554 34455555556667777777777777655422 23567777777655
Q ss_pred HHHHH
Q 009998 310 YFFQY 314 (520)
Q Consensus 310 ~f~~~ 314 (520)
++-++
T Consensus 205 eLS~~ 209 (676)
T PRK05683 205 QLNEL 209 (676)
T ss_pred HHHhh
Confidence 44443
No 336
>PF15456 Uds1: Up-regulated During Septation
Probab=35.01 E-value=3.7e+02 Score=24.81 Aligned_cols=75 Identities=19% Similarity=0.284 Sum_probs=39.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 009998 247 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVA-----------EKRDKAFANIKELRKQRDEGNAYFFQYR 315 (520)
Q Consensus 247 eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~-----------~krdeay~~i~~LRke~de~n~~f~~~r 315 (520)
++++||+++..+...+..++.++. +...+......+..++ +-....-+.+..+-...|+...++|+..
T Consensus 23 EVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~le 101 (124)
T PF15456_consen 23 EVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKLE 101 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 466677777777777776666663 4333332222233221 2233444555555566666666666655
Q ss_pred HHHHHHH
Q 009998 316 ALLNEAK 322 (520)
Q Consensus 316 ~~~~kar 322 (520)
+.+...+
T Consensus 102 ~R~~~~~ 108 (124)
T PF15456_consen 102 NRLAEVR 108 (124)
T ss_pred HHHHHHH
Confidence 5555443
No 337
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=34.97 E-value=6.6e+02 Score=27.80 Aligned_cols=26 Identities=12% Similarity=0.202 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 95 IDLTDREIQRRNQARMQLMDELRAKR 120 (520)
Q Consensus 95 I~~a~keI~kl~q~R~~I~akl~~~r 120 (520)
++.+..+++..++--..|-+....++
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lk 287 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLK 287 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444545554443
No 338
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=34.77 E-value=1.5e+02 Score=27.65 Aligned_cols=79 Identities=14% Similarity=0.300 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 201 KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQ 280 (520)
Q Consensus 201 KklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~~~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lq 280 (520)
.-+|.|...|-.++..+...-. ... -....+.+++.+.+..+.....-++.|+.++.+-+.+|..|.
T Consensus 48 ~~vVsEL~~Ls~LK~~y~~~~~--------~~~-----~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr 114 (131)
T PF04859_consen 48 EAVVSELRRLSELKRRYRKKQS--------DPS-----PQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLR 114 (131)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC--------CCC-----ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777666665443110 000 122345566777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHH
Q 009998 281 QEVNDVAEKRDK 292 (520)
Q Consensus 281 eel~al~~krde 292 (520)
.+++.+......
T Consensus 115 ~~L~~~~~~n~~ 126 (131)
T PF04859_consen 115 EKLDELNRANKS 126 (131)
T ss_pred HHHHHHHHHHHH
Confidence 777776654433
No 339
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=34.70 E-value=6.3e+02 Score=27.48 Aligned_cols=59 Identities=12% Similarity=0.262 Sum_probs=39.4
Q ss_pred HhhHHHHHHHHhhhhhhccccCCCCCCHHHHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHHHHHHHH
Q 009998 149 KEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEII--PLSEEKQILREIKQLEGTREK 216 (520)
Q Consensus 149 kEik~Lq~~L~klre~~nArsk~~f~SveEID~rI~~LE~~IqhgSL--sL~EEKklLkEIk~Lkk~Rk~ 216 (520)
+.++.|...+..+. .+...+.+..++..|+..+...++ ....=..+++|.+.|...-..
T Consensus 7 ~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~ 67 (367)
T PRK00578 7 ERLKDLDEKLENIR---------GVLDVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDT 67 (367)
T ss_pred HHHHHHHHHHHHHH---------hhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555443 367888999999999999987775 333334566777777666544
No 340
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=34.44 E-value=2.3e+02 Score=24.71 Aligned_cols=55 Identities=25% Similarity=0.478 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVK--AL-DEEIEALQQEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~--al-~~ei~~Lqeel~al~~krdeay~~i~~LRk 302 (520)
||.+-..+...+..+..+..++. .+ .+.+..|.+++.++...-...-+.+..||.
T Consensus 7 Id~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 7 IDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 55555555555555555554442 12 235667778888888888777778888877
No 341
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=34.43 E-value=2.9e+02 Score=25.19 Aligned_cols=33 Identities=12% Similarity=0.245 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHH-HHHHhcCCCCcHHHHHHHHHH
Q 009998 175 SEEELDDLIRSL-QYRIQHEIIPLSEEKQILREI 207 (520)
Q Consensus 175 SveEID~rI~~L-E~~IqhgSLsL~EEKklLkEI 207 (520)
+..++-.+...| +..+.-|-|+..|=|+++.++
T Consensus 18 ~~a~~~ek~~klvDelVkkGeln~eEak~~vddl 51 (108)
T COG3937 18 LAAETAEKVQKLVDELVKKGELNAEEAKRFVDDL 51 (108)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 444555555444 456788999999999999886
No 342
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=34.36 E-value=5.8e+02 Score=26.97 Aligned_cols=54 Identities=19% Similarity=0.337 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 009998 206 EIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKAL 272 (520)
Q Consensus 206 EIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~~~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al 272 (520)
.-..|.+.|.++..-...++. +|--+.+.|+..|+.++.+...|+-++..+...
T Consensus 75 ~c~~lek~rqKlshdlq~Ke~-------------qv~~lEgQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 75 SCENLEKTRQKLSHDLQVKES-------------QVNFLEGQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred HHHHHHHHHHHhhHHHhhhHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777776653333222 343444456666777777777766666665443
No 343
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=34.35 E-value=2e+02 Score=24.34 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 251 VKKESQAVWAKISHLEGKVKALDE-----EIEALQQEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 251 lKkeldalr~kIkel~~k~~al~~-----ei~~Lqeel~al~~krdeay~~i~~LRk 302 (520)
|..++..++-...++.+.++.++. ....|..++..+....+..-..|..|++
T Consensus 22 LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L~d 78 (79)
T PF06657_consen 22 LQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKLYD 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333333333344444443332 4556666777777766666666666653
No 344
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=34.32 E-value=2.9e+02 Score=29.65 Aligned_cols=47 Identities=13% Similarity=0.265 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHhhh
Q 009998 116 LRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLR 162 (520)
Q Consensus 116 l~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~klr 162 (520)
-+.+.+..+.+...+.++..-|..+-+.+...++.++.|...|++..
T Consensus 13 fq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~ 59 (330)
T PF07851_consen 13 FQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCK 59 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555667777778888888888888888888888888887654
No 345
>PRK15396 murein lipoprotein; Provisional
Probab=34.28 E-value=1.9e+02 Score=24.72 Aligned_cols=45 Identities=20% Similarity=0.426 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDK 292 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krde 292 (520)
++.|..+++.+..++..+.....++...+..-++|-.-++..+|-
T Consensus 27 vd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 27 IDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555555555555553
No 346
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=34.27 E-value=4.4e+02 Score=27.92 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 009998 270 KALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEA 321 (520)
Q Consensus 270 ~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~ka 321 (520)
..|+++-..|.=+++-|++...++-+.+-.|+.++.++..+|-..++.....
T Consensus 101 aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L 152 (302)
T PF09738_consen 101 AQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSL 152 (302)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677777777777777777777777776666655555444444443
No 347
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=34.02 E-value=1.9e+02 Score=33.50 Aligned_cols=65 Identities=25% Similarity=0.376 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHH-------HHHhhhhhhc
Q 009998 102 IQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQ-------ALGKLRTTNN 166 (520)
Q Consensus 102 I~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~-------~L~klre~~n 166 (520)
|..+.-.+.-+..++..+..+|++|.+++..+...+..++..+..+.-++..|+- ++..+++.|+
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~ 152 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNN 152 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence 4444555556777888888999999999999999998888888877777777754 3345666554
No 348
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=33.91 E-value=2.3e+02 Score=26.92 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhcCCC
Q 009998 179 LDDLIRSLQYRIQHEII 195 (520)
Q Consensus 179 ID~rI~~LE~~IqhgSL 195 (520)
|++||..|+.++.+-.+
T Consensus 59 ~e~RI~~L~~~L~~A~i 75 (158)
T PRK05892 59 LDDRINELDRRLRTGPT 75 (158)
T ss_pred HHHHHHHHHHHHHhCEE
Confidence 55666666666655433
No 349
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=33.83 E-value=8.8e+02 Score=28.85 Aligned_cols=106 Identities=17% Similarity=0.215 Sum_probs=59.2
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------
Q 009998 243 LMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYR------- 315 (520)
Q Consensus 243 ~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r------- 315 (520)
.+...++.|++++..-..-|.++....+++++.+..-..++..+.-+++.+-..+..+...+++....|..-.
T Consensus 591 ~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e 670 (786)
T PF05483_consen 591 ILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISE 670 (786)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhH
Confidence 3334455556655555555555555556666666666666666666666666666666666666666554422
Q ss_pred ----HHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHHHH
Q 009998 316 ----ALLNEAKAMSVK--KDVQGLKELSNSEVEKYMTLW 348 (520)
Q Consensus 316 ----~~~~karela~~--~~v~el~~~~~~eve~fm~~w 348 (520)
....+++-.|.- +...+..--|.--+--+++|-
T Consensus 671 ~~L~~EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVALM 709 (786)
T PF05483_consen 671 EELLGEVEKAKLTADEAVKLQEETDLRCQHKIAEMVALM 709 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 223444444433 345555555665555555554
No 350
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=33.33 E-value=3.4e+02 Score=30.25 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 009998 281 QEVNDVAEKRDKAFANIKEL 300 (520)
Q Consensus 281 eel~al~~krdeay~~i~~L 300 (520)
.++..+..++.++-++|..|
T Consensus 145 ~~~~~~~~~~~~~~~~l~~l 164 (525)
T TIGR02231 145 TEDREAERRIRELEKQLSEL 164 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 351
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=33.32 E-value=43 Score=25.26 Aligned_cols=44 Identities=5% Similarity=0.031 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhCChHhHHHHHHHhHHHHhhhhhccCCCCCCCC
Q 009998 338 NSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPD 381 (520)
Q Consensus 338 ~~eve~fm~~wn~~~~FR~dY~k~~~~s~~~R~~~~DGR~~~pd 381 (520)
..+++.|+..-.+|.+||..+..|-...-...+....|-.-.++
T Consensus 3 ~~~l~~Fl~~~~~d~~l~~~l~~~~~~~e~~~lA~~~Gy~ft~~ 46 (49)
T PF07862_consen 3 IESLKAFLEKVKSDPELREQLKACQNPEEVVALAREAGYDFTEE 46 (49)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHcCCCCCHH
Confidence 46799999999999999999999877766667777777655443
No 352
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=33.10 E-value=7.4e+02 Score=27.74 Aligned_cols=105 Identities=15% Similarity=0.228 Sum_probs=65.5
Q ss_pred CCCCchHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHhhHH
Q 009998 84 RQYDDPKIRAKIDL-------TDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGR---QYKSVMDDKRKEMEP 153 (520)
Q Consensus 84 ~rpDd~~lkakI~~-------a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk---~~r~~~~eK~kEik~ 153 (520)
+.+|||.+...+.- |..-|..+++.-+.++..++.++.++.-|.+-|.--+++-. +|=..+. .-...
T Consensus 102 w~~ddpDi~~~l~gvnSGLvrAKDSItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk---~nCrk 178 (558)
T PF15358_consen 102 WAPDDPDITELLEGVNSGLVRAKDSITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLK---ENCRK 178 (558)
T ss_pred CCCCCccHHHHHhhhcccceecccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHH---HHHHH
Confidence 46788888766654 45668888888888888899888888888777754333222 2222221 11111
Q ss_pred HHHHHH--hhhhhhccccCCCCCCHHHHHHHHHHHHHHHhcCCCCc
Q 009998 154 LHQALG--KLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPL 197 (520)
Q Consensus 154 Lq~~L~--klre~~nArsk~~f~SveEID~rI~~LE~~IqhgSLsL 197 (520)
+-..+. .+ +....-.+.+-|+.+++.|..++|.++.+-
T Consensus 179 Vt~SVedaEi------KtnvLkqnS~~LEekLr~lq~qLqdE~prr 218 (558)
T PF15358_consen 179 VTRSVEDAEI------KTNVLKQNSALLEEKLRYLQQQLQDETPRR 218 (558)
T ss_pred HhhhHHHHHH------HhcccccchHHHHHHHHHHHHHhcccCcch
Confidence 111111 11 112344567789999999999999998863
No 353
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=33.07 E-value=3.3e+02 Score=23.79 Aligned_cols=44 Identities=32% Similarity=0.401 Sum_probs=24.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRD 291 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krd 291 (520)
++.|..+++.+..++..+......++.....-++|-..+++.+|
T Consensus 26 vdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiD 69 (85)
T PRK09973 26 VNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLD 69 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44455555555555555555555555555555555555555554
No 354
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=32.85 E-value=2.9e+02 Score=22.94 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 271 ALDEEIEALQQEVNDVAEKRDKAFAN 296 (520)
Q Consensus 271 al~~ei~~Lqeel~al~~krdeay~~ 296 (520)
+...+...|.+....+..+.+.....
T Consensus 32 ~~~~ER~~L~ekne~Ar~rvEamI~R 57 (65)
T TIGR02449 32 TWREERAQLLEKNEQARQKVEAMITR 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333344443333333333333
No 355
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=32.31 E-value=6.6e+02 Score=26.96 Aligned_cols=11 Identities=27% Similarity=0.449 Sum_probs=6.4
Q ss_pred CchHHHHHHHH
Q 009998 87 DDPKIRAKIDL 97 (520)
Q Consensus 87 Dd~~lkakI~~ 97 (520)
.||..-+.|..
T Consensus 141 ~dp~~A~~i~n 151 (444)
T TIGR03017 141 VDPRFAATVAN 151 (444)
T ss_pred CCHHHHHHHHH
Confidence 45666666654
No 356
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=32.30 E-value=7.8e+02 Score=27.81 Aligned_cols=12 Identities=17% Similarity=0.113 Sum_probs=7.1
Q ss_pred ccCCCCCCCCCC
Q 009998 372 SRDGRIRNPDEK 383 (520)
Q Consensus 372 ~~DGR~~~pde~ 383 (520)
+-||+..-||--
T Consensus 233 ~~~g~~~rPDvi 244 (475)
T PRK10361 233 NDARSRMQPDVI 244 (475)
T ss_pred CCCCCeeCCeEE
Confidence 456766666643
No 357
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=32.22 E-value=6.1e+02 Score=26.56 Aligned_cols=20 Identities=15% Similarity=0.092 Sum_probs=11.3
Q ss_pred ccccCCCcchhhhhcccccc
Q 009998 3 AEMAQSPVESVAEVHNSLAQ 22 (520)
Q Consensus 3 ~e~~~~~~~~~~~~~~~~~~ 22 (520)
+|..-+|-++++-+..+++|
T Consensus 10 ~~~~~~~~~~~~s~~~~~~~ 29 (269)
T PF05278_consen 10 PEILLSPRSRPVSRSITPVH 29 (269)
T ss_pred hhhccCCccCCCCCcccccc
Confidence 45555566665555555555
No 358
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=31.98 E-value=4.4e+02 Score=24.87 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFAN 296 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~ 296 (520)
+..++.++..+...++.+.-.+..+..+...|...+..-..+..++-..
T Consensus 54 ie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 54 IETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444333333333333333333333
No 359
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=31.94 E-value=3.3e+02 Score=23.33 Aligned_cols=20 Identities=25% Similarity=0.217 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhHHHHHHHHH
Q 009998 298 KELRKQRDEGNAYFFQYRAL 317 (520)
Q Consensus 298 ~~LRke~de~n~~f~~~r~~ 317 (520)
..|...+......|......
T Consensus 92 ~~L~~~f~~~m~~fq~~Q~~ 111 (117)
T smart00503 92 EKLRKKFKEVMNEFQRLQRK 111 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 360
>PF14282 FlxA: FlxA-like protein
Probab=31.93 E-value=3.1e+02 Score=24.30 Aligned_cols=52 Identities=19% Similarity=0.239 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 009998 92 RAKIDLTDREIQRRNQARMQLMD----ELRAKRVIRGDLAAQLRSLKTEGRQYKSV 143 (520)
Q Consensus 92 kakI~~a~keI~kl~q~R~~I~a----kl~~~r~~R~eL~~qLkaLr~qqk~~r~~ 143 (520)
...|..|++.|..|.+....|.. --..+...+..|..+|..|.++...+...
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666665555554 12345777888888888887777655444
No 361
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=31.90 E-value=1.6e+02 Score=31.01 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=8.4
Q ss_pred HhCChHhHHHHHHH
Q 009998 348 WNNNKAFRDDYEKR 361 (520)
Q Consensus 348 wn~~~~FR~dY~k~ 361 (520)
-|++-.|-.+|.+-
T Consensus 207 qNd~~~f~~kY~~e 220 (308)
T PF06717_consen 207 QNDPEKFEEKYYKE 220 (308)
T ss_pred ccChHHHHHhcccc
Confidence 35666666666653
No 362
>PRK02195 V-type ATP synthase subunit D; Provisional
Probab=31.61 E-value=3.2e+02 Score=27.04 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 009998 276 IEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQY 314 (520)
Q Consensus 276 i~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~ 314 (520)
++-|+.+++.+..+.-.+......||.+.++.....|+.
T Consensus 26 ~~lLk~KR~~Li~e~~~~~~~~~~lr~~~~~~~~~a~~~ 64 (201)
T PRK02195 26 LPTLKLKKAQLQAEVRRAKAEAAELEQEYQKLRQAIEAW 64 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555555555666666655544443
No 363
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=31.58 E-value=1.9e+02 Score=32.44 Aligned_cols=45 Identities=11% Similarity=0.299 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 262 ISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 262 Ikel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de 306 (520)
+.+-..+..++.++|..|..++..+...++..-.+|++|..+...
T Consensus 71 LteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~ 115 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAA 115 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555554444444444433
No 364
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=31.54 E-value=1.6e+02 Score=24.58 Aligned_cols=59 Identities=22% Similarity=0.356 Sum_probs=39.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de 306 (520)
+++|++++..++.+-.+..-.+-.+.++++.=..++-.+-++-=.+|..+..+|.++..
T Consensus 4 ~~eLk~evkKL~~~A~~~kmdLHDLaEdLP~~w~~i~~vA~~ty~a~~~l~~ak~~L~~ 62 (66)
T PF05082_consen 4 IEELKKEVKKLNRKATQAKMDLHDLAEDLPTNWEEIPEVAQKTYDAYAELDEAKAELKA 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777666666666666666666655666666666666777777777776654
No 365
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=31.53 E-value=3.3e+02 Score=25.20 Aligned_cols=69 Identities=12% Similarity=0.265 Sum_probs=20.2
Q ss_pred ccccCCCCccccceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009998 65 VGEEWPEPRVIHNFYFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGR 138 (520)
Q Consensus 65 a~~~~~~~~~~~~~yfVK~~rpDd~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk 138 (520)
|..+-|+| ..||=|-+--|+ .|...+..=+.++.........|...+..++..-.....++..++..+.
T Consensus 14 A~~~nPdP---~~~~Pv~i~GF~--dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~ 82 (141)
T PF13874_consen 14 ALRDNPDP---SRLIPVPIIGFE--DLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQ 82 (141)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCcCC---cCeeeehhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33344666 233333333444 4555555445555555555556666666664444455555555544443
No 366
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=31.48 E-value=5.8e+02 Score=26.03 Aligned_cols=135 Identities=16% Similarity=0.180 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhccchhhHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Q 009998 202 QILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISH-----LEGKVKALDEEI 276 (520)
Q Consensus 202 klLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~~~d~iK~l~~eLd~lKkeldalr~kIke-----l~~k~~al~~ei 276 (520)
-+|.++..+=+.|..+..++.. .+.+.+..+..+...+|+.++.+..+|.. ....+...+..|
T Consensus 69 ~vl~qte~iA~~~~~~aE~l~~------------~i~~~l~~l~~~~~~~~k~~~~~~~kl~~e~~~~~~~~l~K~K~~Y 136 (234)
T cd07686 69 HMVQQTEQLSKIMKTHAEELNS------------GPLHRLTMMIKDKQQVKKSYIGVHQQIEAEMYKVTKTELEKLKCSY 136 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3566777777777766554321 12233433334445566666666555542 223345666677
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHhccC----HHHHHHHHHHHHH
Q 009998 277 EALQQEVNDVAEKRDKAFAN---IKELRKQRDEG-------NAYFFQYRALLNEAKAMSVKKD----VQGLKELSNSEVE 342 (520)
Q Consensus 277 ~~Lqeel~al~~krdeay~~---i~~LRke~de~-------n~~f~~~r~~~~karela~~~~----v~el~~~~~~eve 342 (520)
..+-.....+..+-.+++.+ -...+..+++. .+.|--.....+.-++.=+.-+ ...||.++..=|-
T Consensus 137 ~~~~~~~e~ar~K~~~a~~~gk~~~Ka~~k~~~~~~km~~~kN~Yll~i~~aN~~k~~Yy~~~lP~lLd~lQ~l~E~rv~ 216 (234)
T cd07686 137 RQLTKEVNSAKEKYKDAVAKGKETEKARERYDKATMKLHMLHNQYVLAVKGAQLHQHQYYDFTLPLLLDSLQKMQEEMIK 216 (234)
T ss_pred HHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777776666666532 23333333322 2233333333334344433333 3467777777777
Q ss_pred HHHHHH
Q 009998 343 KYMTLW 348 (520)
Q Consensus 343 ~fm~~w 348 (520)
.+..+|
T Consensus 217 ~ln~i~ 222 (234)
T cd07686 217 ALKGIL 222 (234)
T ss_pred HHHHHH
Confidence 777777
No 367
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=31.40 E-value=5.4e+02 Score=25.69 Aligned_cols=26 Identities=8% Similarity=0.046 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 92 RAKIDLTDREIQRRNQARMQLMDELR 117 (520)
Q Consensus 92 kakI~~a~keI~kl~q~R~~I~akl~ 117 (520)
-.-|..|+.--+++...-..+...+.
T Consensus 7 ~~~v~dL~~~n~~L~~en~kL~~~ve 32 (193)
T PF14662_consen 7 LSCVEDLQLNNQKLADENAKLQRSVE 32 (193)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 368
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=30.70 E-value=2.7e+02 Score=24.20 Aligned_cols=42 Identities=26% Similarity=0.148 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 009998 103 QRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVM 144 (520)
Q Consensus 103 ~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~ 144 (520)
..++...++|...|+.+-.+-..|..+|..|.+-+++.|..+
T Consensus 29 ~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~ 70 (83)
T PF03670_consen 29 AAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEF 70 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344444455556666666666777777777766655554443
No 369
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=30.66 E-value=7.9e+02 Score=27.33 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 251 VKKESQAVWAKISHLEGKVKALDEE 275 (520)
Q Consensus 251 lKkeldalr~kIkel~~k~~al~~e 275 (520)
|....+.+-.++..|.+-+..+..+
T Consensus 211 L~~~sd~Ll~kVdDLQD~VE~LRkD 235 (424)
T PF03915_consen 211 LSEESDRLLTKVDDLQDLVEDLRKD 235 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555443
No 370
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=30.49 E-value=7.1e+02 Score=26.77 Aligned_cols=71 Identities=11% Similarity=0.173 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 009998 249 DGVKKESQAVWAKISHLEGKVKALD---EEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLN 319 (520)
Q Consensus 249 d~lKkeldalr~kIkel~~k~~al~---~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~ 319 (520)
-++=..++.+-..|-.+-+.+..|+ .+...-..-+..+...+...-..+.....-+...+..|-+|...+.
T Consensus 301 y~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~ 374 (388)
T PF04912_consen 301 YEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETIE 374 (388)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555554443 2344444555555555555555555555555566666666655543
No 371
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=30.46 E-value=8.2e+02 Score=29.13 Aligned_cols=19 Identities=11% Similarity=0.100 Sum_probs=11.3
Q ss_pred HhHHHHhhhhhccCCCCCC
Q 009998 361 RLLQSLDMRQLSRDGRIRN 379 (520)
Q Consensus 361 ~~~~s~~~R~~~~DGR~~~ 379 (520)
..|++.++..|..+-+...
T Consensus 734 G~Lr~~v~~~L~~~~~V~~ 752 (771)
T TIGR01069 734 GKLRKGVQELLKNHPKVKS 752 (771)
T ss_pred hHHHHHHHHHhcCCcceee
Confidence 4567777777766544433
No 372
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=30.45 E-value=5.1e+02 Score=25.12 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 009998 275 EIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALL 318 (520)
Q Consensus 275 ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~ 318 (520)
.++.+..+++.+...--+-++.-..|.+...++...|-+-...+
T Consensus 120 ~vp~~~~kL~~L~~~~~~Q~e~~~~ls~~~~~Ll~~YN~ii~~l 163 (174)
T PF07426_consen 120 NVPELCDKLQKLSQIHLEQQEESEELSEEVQELLQQYNKIILLL 163 (174)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666666666666666655554444433
No 373
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.39 E-value=2.5e+02 Score=31.23 Aligned_cols=67 Identities=19% Similarity=0.236 Sum_probs=32.8
Q ss_pred HHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 240 QVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDE----EIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 240 ~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~----ei~~Lqeel~al~~krdeay~~i~~LRke~de 306 (520)
.+-.++.+.-.+..+.+.++.+.+.+.+++..... ....|..+...+..+...+-..+.++..+++.
T Consensus 30 ~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~ 100 (429)
T COG0172 30 KLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDT 100 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33333344444555555555555555555542111 23445555555555555555555555555443
No 374
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=30.04 E-value=1.1e+03 Score=28.84 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 009998 91 IRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVM 144 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~ 144 (520)
++++|..++.++-... ...+.+.++.++.+=..+.+.++++..+...++..+
T Consensus 335 lK~ql~~l~~ell~~~--~~~~~~ei~sl~~e~~~l~~~~d~~~~e~~e~~s~~ 386 (913)
T KOG0244|consen 335 LKAQLEPLQVELLSKA--GDELDAEINSLPFENVTLEETLDALLQEKGEERSTL 386 (913)
T ss_pred HHHHHHHHHHHHHhhc--cccchhHHhhhhhhhhhhhhhHHHHhcchhhhhhhh
Confidence 4445555544443322 222446777777777777777777777666555444
No 375
>PRK14158 heat shock protein GrpE; Provisional
Probab=30.00 E-value=4.2e+02 Score=26.30 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=12.2
Q ss_pred eecCCCCCCcccCCCCccccCCCCCC
Q 009998 38 IFGSHGGVGELVNGKESNVSNANLPK 63 (520)
Q Consensus 38 ~fgs~~~~~~~~~~~~~~~~~~~~p~ 63 (520)
..|||+. .+.-+..+..-+++.+|+
T Consensus 5 ~~~~~~~-~~~~~~~~~~~~~~~~~~ 29 (194)
T PRK14158 5 KHGSHQI-AEALKAKAAKEAEAAQGK 29 (194)
T ss_pred cccchhh-HHHHHHhhcccccccCCC
Confidence 5688884 332233333344554444
No 376
>PRK04406 hypothetical protein; Provisional
Probab=29.83 E-value=3.4e+02 Score=22.85 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 276 IEALQQEVNDVAEKRDKAFANIKEL 300 (520)
Q Consensus 276 i~~Lqeel~al~~krdeay~~i~~L 300 (520)
|..|++-+-.-...++.+-..+..|
T Consensus 27 Ie~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 27 IEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 377
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=29.38 E-value=3.2e+02 Score=22.35 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHH
Q 009998 112 LMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPL 154 (520)
Q Consensus 112 I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~L 154 (520)
|...|...+..-..+-.+|+....+++.+...+....++|+.+
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444455555555444444444444444444433
No 378
>PRK02119 hypothetical protein; Provisional
Probab=29.23 E-value=3.4e+02 Score=22.66 Aligned_cols=11 Identities=18% Similarity=0.262 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 009998 290 RDKAFANIKEL 300 (520)
Q Consensus 290 rdeay~~i~~L 300 (520)
++.+-..+..|
T Consensus 39 id~L~~ql~~L 49 (73)
T PRK02119 39 IDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 379
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=29.14 E-value=3.4e+02 Score=23.58 Aligned_cols=34 Identities=12% Similarity=0.263 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 271 ALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 304 (520)
Q Consensus 271 al~~ei~~Lqeel~al~~krdeay~~i~~LRke~ 304 (520)
+|+.-++.|.+..+.|..+..++...-+..|.++
T Consensus 37 ~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~ 70 (83)
T PF03670_consen 37 QLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEF 70 (83)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444443
No 380
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=28.98 E-value=3.5e+02 Score=23.29 Aligned_cols=12 Identities=42% Similarity=0.540 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 009998 271 ALDEEIEALQQE 282 (520)
Q Consensus 271 al~~ei~~Lqee 282 (520)
+++.+...|..+
T Consensus 41 ~Vk~E~~kL~~E 52 (80)
T PF10224_consen 41 EVKEENEKLESE 52 (80)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 381
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=28.86 E-value=7.3e+02 Score=26.38 Aligned_cols=154 Identities=18% Similarity=0.236 Sum_probs=95.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 197 LSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEI 276 (520)
Q Consensus 197 L~EEKklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~~~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei 276 (520)
..-||++..|++.-++.|-.... .-..++. .+.+.+ +. ..||..|..+..|..+|.-....++++...|
T Consensus 91 yaWEKKLY~EVKa~E~~r~~yeK---K~~~Lr~-~d~kg~--~~-----~kidkTra~v~~L~tri~Vaiq~v~siS~~I 159 (312)
T PF04782_consen 91 YAWEKKLYDEVKAEEKLRIEYEK---KCKQLRK-QDAKGA--DS-----SKIDKTRASVKDLHTRIRVAIQSVDSISKRI 159 (312)
T ss_pred HHHHHHHHHHHHccHHHHHHHHH---HHHHHHH-HHhCCc--cH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999998876443 2122221 111111 11 1256666777777777666666666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHhc---cCHHHHHHHHHHHHHHHHHHHh
Q 009998 277 EALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRA----LLNEAKAMSVK---KDVQGLKELSNSEVEKYMTLWN 349 (520)
Q Consensus 277 ~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~----~~~karela~~---~~v~el~~~~~~eve~fm~~wn 349 (520)
+.|.++ ++|-.+.+|-.-+-.+|+.-+++=. .+..++-+... .-..+.....-.|.|.-+.-|+
T Consensus 160 ~kLRDe---------EL~PQL~eLi~Gl~~MWk~M~ecHq~Q~~ii~~~k~l~~~~~~~~~s~~h~~at~~Le~el~~W~ 230 (312)
T PF04782_consen 160 EKLRDE---------ELYPQLVELIQGLMRMWKSMLECHQKQFQIIQEAKSLDSSPSNEPTSESHRQATLQLEAELQNWH 230 (312)
T ss_pred HHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCChHHHHHHHHHHHHHHHHH
Confidence 766553 7888888898888888886665543 33444422222 2455666777777777777777
Q ss_pred CCh----HhHHHHHHHhHHHHhhhhh
Q 009998 350 NNK----AFRDDYEKRLLQSLDMRQL 371 (520)
Q Consensus 350 ~~~----~FR~dY~k~~~~s~~~R~~ 371 (520)
... ..=++|++.. .+-.++-+
T Consensus 231 ~sF~~~i~~Qk~YV~aL-n~WL~~~l 255 (312)
T PF04782_consen 231 SSFCKWIKAQKSYVKAL-NGWLKLCL 255 (312)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhc
Confidence 654 4567898854 44455544
No 382
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=28.86 E-value=6e+02 Score=25.40 Aligned_cols=20 Identities=40% Similarity=0.494 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 009998 199 EEKQILREIKQLEGTREKVM 218 (520)
Q Consensus 199 EEKklLkEIk~Lkk~Rk~v~ 218 (520)
||-++=+|+..|......+.
T Consensus 97 EevrLkrELa~Le~~l~~~~ 116 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVE 116 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555544433
No 383
>PF13514 AAA_27: AAA domain
Probab=28.77 E-value=1.2e+03 Score=28.80 Aligned_cols=8 Identities=13% Similarity=0.580 Sum_probs=3.6
Q ss_pred HhHHHHHH
Q 009998 353 AFRDDYEK 360 (520)
Q Consensus 353 ~FR~dY~k 360 (520)
.||..|.-
T Consensus 972 ~~r~~~~p 979 (1111)
T PF13514_consen 972 RYREERQP 979 (1111)
T ss_pred HHHHHhhH
Confidence 34544443
No 384
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=28.72 E-value=3.5e+02 Score=22.70 Aligned_cols=17 Identities=6% Similarity=0.139 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHhH
Q 009998 293 AFANIKELRKQRDEGNA 309 (520)
Q Consensus 293 ay~~i~~LRke~de~n~ 309 (520)
...++..+++.....+.
T Consensus 62 y~~KL~~ikkrm~~l~~ 78 (92)
T PF14712_consen 62 YVKKLVNIKKRMSNLHE 78 (92)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444445544444444
No 385
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=28.56 E-value=2.2e+02 Score=33.01 Aligned_cols=10 Identities=40% Similarity=0.458 Sum_probs=6.2
Q ss_pred ccccCCCCCC
Q 009998 54 SNVSNANLPK 63 (520)
Q Consensus 54 ~~~~~~~~p~ 63 (520)
+|++..++|+
T Consensus 25 ~NIANanT~G 34 (626)
T PRK08871 25 HNISNVNTEG 34 (626)
T ss_pred hhhhcCCCCC
Confidence 4566666666
No 386
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=28.54 E-value=39 Score=30.05 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHHHHHHHhCChHhHHHH
Q 009998 341 VEKYMTLWNNNKAFRDDY 358 (520)
Q Consensus 341 ve~fm~~wn~~~~FR~dY 358 (520)
...+-.+++....||..|
T Consensus 113 ~~~~~~lk~~~~~~~~~~ 130 (131)
T PF05103_consen 113 REEIEELKRQAEQFRAQF 130 (131)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344455666666666654
No 387
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=27.94 E-value=3.3e+02 Score=28.90 Aligned_cols=14 Identities=29% Similarity=0.461 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 009998 252 KKESQAVWAKISHL 265 (520)
Q Consensus 252 Kkeldalr~kIkel 265 (520)
+.+++.+..++..+
T Consensus 5 ~~~~~~~~~~~r~l 18 (378)
T TIGR01554 5 KEQREEIVAEIRSL 18 (378)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 388
>PF15294 Leu_zip: Leucine zipper
Probab=27.83 E-value=7.4e+02 Score=26.09 Aligned_cols=44 Identities=18% Similarity=0.377 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhHHHHHhhcc
Q 009998 203 ILREIKQLEGTREKVMAN-AAMRAKIQESMGKKEDIQDQVKLMGS 246 (520)
Q Consensus 203 lLkEIk~Lkk~Rk~v~a~-~~~~akiq~s~~~ke~~~d~iK~l~~ 246 (520)
+-+||..|+.--+.+..- ..........++++..++.+++.++.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556676666433333221 11122234456666667777665544
No 389
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=27.81 E-value=3.1e+02 Score=28.10 Aligned_cols=31 Identities=23% Similarity=0.463 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 269 VKALDEEIEALQQEVNDVAEKRDKAFANIKE 299 (520)
Q Consensus 269 ~~al~~ei~~Lqeel~al~~krdeay~~i~~ 299 (520)
+..|+..+..++-+++.+.+...+.|..|+.
T Consensus 70 v~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 70 IDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444
No 390
>PHA03332 membrane glycoprotein; Provisional
Probab=27.77 E-value=1.3e+03 Score=28.95 Aligned_cols=10 Identities=20% Similarity=0.006 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 009998 486 VAKAALRAEK 495 (520)
Q Consensus 486 ~akA~~raqk 495 (520)
+.-|+..|+-
T Consensus 1226 ~~sa~v~a~L 1235 (1328)
T PHA03332 1226 QFSAQVMAKL 1235 (1328)
T ss_pred hhHHHHHHHH
Confidence 3344444443
No 391
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=27.71 E-value=1.4e+02 Score=28.34 Aligned_cols=10 Identities=20% Similarity=0.162 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 009998 252 KKESQAVWAK 261 (520)
Q Consensus 252 Kkeldalr~k 261 (520)
++|+++++.+
T Consensus 46 ~~Ei~~l~~E 55 (161)
T PF04420_consen 46 RKEILQLKRE 55 (161)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344434333
No 392
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=27.68 E-value=4.4e+02 Score=28.28 Aligned_cols=69 Identities=17% Similarity=0.264 Sum_probs=48.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHH
Q 009998 87 DDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALG 159 (520)
Q Consensus 87 Dd~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~ 159 (520)
+++.+.--|..|+-|+.. |..+..+++.+..++..+..+.+..+....++...+..-++...++|..++
T Consensus 85 ~~~~H~lml~RL~~EL~~----Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~ 153 (355)
T PF09766_consen 85 EDDEHQLMLARLEFELEQ----RKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYLG 153 (355)
T ss_pred CCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhC
Confidence 457777788888777633 556667777777777777777777777777776666666666677776664
No 393
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=27.35 E-value=8.7e+02 Score=26.77 Aligned_cols=186 Identities=12% Similarity=0.103 Sum_probs=0.0
Q ss_pred cchhhhhcccccc-ccCCCCCCCCCCcceeecCCCCCCcccCCCCccccCCCCCCCccccCCCCccccc----eeeeccC
Q 009998 10 VESVAEVHNSLAQ-ENGKLDKGPVKDESIIFGSHGGVGELVNGKESNVSNANLPKDVGEEWPEPRVIHN----FYFIRHR 84 (520)
Q Consensus 10 ~~~~~~~~~~~~~-en~~~~~~~~~~~~i~fgs~~~~~~~~~~~~~~~~~~~~p~da~~~~~~~~~~~~----~yfVK~~ 84 (520)
+.++--.-.+|-| .++--+..|+.+..-+|||+..+..+.-+...-+--++.|.+..+..+.....-. -.-....
T Consensus 131 ikNkFGSADNI~sl~~~~~~~~~~~~~~~l~~s~~~~~~~ky~S~d~SecSS~tS~S~~~~s~~~~~~~~~~~~~~~~~~ 210 (395)
T PF10267_consen 131 IKNKFGSADNISSLKDSLDEPNPDSGPRSLSGSSTLTASPKYGSEDSSECSSVTSGSIDANSNSSNSGGSSQGSSVSSQQ 210 (395)
T ss_pred ccCCCCCCCccccccccccccCCCCCCcCCCCCcccccccccCcccccccccCCCCCCCCCCCCCCCCcccccccccccc
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHH----
Q 009998 85 QYDDPKIRAKIDLTDREIQRRNQARMQLMDELR-AKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALG---- 159 (520)
Q Consensus 85 rpDd~~lkakI~~a~keI~kl~q~R~~I~akl~-~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~---- 159 (520)
...-..+..++.++...+..+...-..+.+.+. ...--...|.++---..--..+.+...+-..+||-.|++.|.
T Consensus 211 ~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EE 290 (395)
T PF10267_consen 211 NLGLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEE 290 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q ss_pred hhhhhhccccCCCCCCHHHHHHHHHHHH--HHHhcCCC
Q 009998 160 KLRTTNNARSGGICSSEEELDDLIRSLQ--YRIQHEII 195 (520)
Q Consensus 160 klre~~nArsk~~f~SveEID~rI~~LE--~~IqhgSL 195 (520)
++-=+-+-|.+-.--..|-+..+|..|| .+.|...+
T Consensus 291 K~~Yqs~eRaRdi~E~~Es~qtRisklE~~~~Qq~~q~ 328 (395)
T PF10267_consen 291 KMAYQSYERARDIWEVMESCQTRISKLEQQQQQQVVQL 328 (395)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhh
No 394
>KOG4191 consensus Histone acetyltransferases PCAF/SAGA/ADA, subunit TADA3L/NGG1 [Chromatin structure and dynamics]
Probab=27.22 E-value=2.8e+02 Score=31.06 Aligned_cols=58 Identities=19% Similarity=0.286 Sum_probs=38.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDE----------EIEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~----------ei~~Lqeel~al~~krdeay~~i~~LRke~d 305 (520)
-|+|-.++..+++.|+.+.+....-.. ...+++.-++-+..++..+|.++..-|+.+.
T Consensus 403 dDEvlaeLR~lqaeLk~vS~~N~k~k~~Ll~la~eE~a~qe~~q~lddlDkqI~qaYvKr~r~~kkrK 470 (516)
T KOG4191|consen 403 DDEVLAELRKLQAELKAVSAHNRKKKHDLLRLAPEEMARQEFQQVLDDLDKQIEQAYVKRNRSRKKRK 470 (516)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345566666666666666555443333 2556777788888888888888877777664
No 395
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=27.08 E-value=7.5e+02 Score=25.98 Aligned_cols=118 Identities=14% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhccchhhHHHHHHHH
Q 009998 180 DDLIRSLQYRIQHEIIPLSE-EKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAV 258 (520)
Q Consensus 180 D~rI~~LE~~IqhgSLsL~E-EKklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~~~d~iK~l~~eLd~lKkeldal 258 (520)
..+-+-.+++-.||.+.+.. -...+.-|+.|+..+-. ...++......-..-.=++..++.+++.++.+++..
T Consensus 188 ~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~------~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e 261 (362)
T TIGR01010 188 ATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIR------VQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQ 261 (362)
T ss_pred HHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 259 WAKISH-LEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ 303 (520)
Q Consensus 259 r~kIke-l~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke 303 (520)
..++.. ....+.....++..|+-+.+-....-+.+...+.+++-+
T Consensus 262 ~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~ 307 (362)
T TIGR01010 262 RNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVE 307 (362)
T ss_pred HHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 396
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=27.00 E-value=6.5e+02 Score=25.22 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 253 KESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANI 297 (520)
Q Consensus 253 keldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i 297 (520)
.++.++++.|+...=++..+...+.....+..+|....|++....
T Consensus 161 ~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k~ 205 (207)
T PF05010_consen 161 AELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISKM 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344456666666666666777777777777777777777776543
No 397
>PF14282 FlxA: FlxA-like protein
Probab=26.69 E-value=4.3e+02 Score=23.39 Aligned_cols=20 Identities=10% Similarity=0.325 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEG 267 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~ 267 (520)
|..|++++..|..+|..|.+
T Consensus 21 I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 21 IEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 44556666666665555544
No 398
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=26.66 E-value=3.2e+02 Score=22.23 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhh
Q 009998 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAK-RVIRGDLAAQLRSLKTEGRQYK 141 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~akl~~~-r~~R~eL~~qLkaLr~qqk~~r 141 (520)
+.-+..|..++..|..+.+...++.-+++.. ...|..+..+|+..+.+...++
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk 74 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLK 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554444443333332 2555555555555544444433
No 399
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=26.55 E-value=7.9e+02 Score=27.80 Aligned_cols=52 Identities=15% Similarity=0.286 Sum_probs=40.8
Q ss_pred eeeccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 79 YFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQL 130 (520)
Q Consensus 79 yfVK~~rpDd~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qL 130 (520)
.++|.-.|+-|.+++.|..+++.+..+..+-..+.......+.+-...+.+|
T Consensus 117 ~L~r~v~YeIP~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~l 168 (507)
T PF05600_consen 117 ILVRNVNYEIPALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKKACKQL 168 (507)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567778999999999999999999988887777666666666655555555
No 400
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=26.49 E-value=7.9e+02 Score=26.00 Aligned_cols=43 Identities=21% Similarity=0.301 Sum_probs=24.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhc---cCHHHHHHHHH--HHHHHHHH
Q 009998 304 RDEGNAYFFQYRALLNEAKAMSVK---KDVQGLKELSN--SEVEKYMT 346 (520)
Q Consensus 304 ~de~n~~f~~~r~~~~karela~~---~~v~el~~~~~--~eve~fm~ 346 (520)
..+....+-.-...+.+|.+-... +++.||+.|.+ .=|...|+
T Consensus 77 ~~~a~~~L~~a~P~L~~A~~al~~l~k~di~Eiks~~~PP~~V~~V~~ 124 (344)
T PF12777_consen 77 KEEAEEELAEAEPALEEAQEALKSLDKSDISEIKSYANPPEAVKLVME 124 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHSSS--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhCCCcHHHHHHHH
Confidence 334455666666666666665555 46666666553 23444444
No 401
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.37 E-value=1.1e+03 Score=27.55 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=21.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhh
Q 009998 473 EGMERKRKKEEAKVAKAALRAEKQRK 498 (520)
Q Consensus 473 ~a~eRKkk~aeKa~akA~~raqkea~ 498 (520)
++++|+-++.|+-+|=+.+.++++-+
T Consensus 357 ~~~er~~~l~e~v~al~rlq~~~d~k 382 (772)
T KOG0999|consen 357 EQRERVDRLTEHVQALRRLQDSKDKK 382 (772)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhhh
Confidence 46888888888888888888888774
No 402
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=26.33 E-value=1.4e+02 Score=30.19 Aligned_cols=61 Identities=20% Similarity=0.438 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhhhhhHHHHH--HHHhhHHHHHHHHhhhhhhccccCCCCCCHHHHHHHHHHHHHHHhcCCCCc
Q 009998 126 LAAQLRSLKTEGRQYKSVMDD--KRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPL 197 (520)
Q Consensus 126 L~~qLkaLr~qqk~~r~~~~e--K~kEik~Lq~~L~klre~~nArsk~~f~SveEID~rI~~LE~~IqhgSLsL 197 (520)
+..+|+.++.+...++..+.. ..+++=.+...|.+++. ..+.+..+++.|+.++..+|++|
T Consensus 137 ~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~-----------eIe~~~~~~~~l~~~v~~sti~i 199 (262)
T PF14257_consen 137 LEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRS-----------EIEQLEGQLKYLDDRVDYSTITI 199 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhceEEEEE
Confidence 333444444444443333321 23455566667766664 35678888999999999998875
No 403
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=26.26 E-value=9.4e+02 Score=26.79 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHH
Q 009998 120 RVIRGDLAAQLRSLKTEGRQYKSV 143 (520)
Q Consensus 120 r~~R~eL~~qLkaLr~qqk~~r~~ 143 (520)
..+|.....+|...+++....+..
T Consensus 101 e~er~~~~~El~~~r~e~~~v~~~ 124 (499)
T COG4372 101 ETEREAARSELQKARQEREAVRQE 124 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333
No 404
>PRK09239 chorismate mutase; Provisional
Probab=26.16 E-value=4.7e+02 Score=23.24 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 269 VKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 304 (520)
Q Consensus 269 ~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~ 304 (520)
+..+..+|+.|..++-.+..+|-.+-..+..++...
T Consensus 12 L~~lR~~ID~ID~eIv~LLa~R~~l~~~Ia~~K~~~ 47 (104)
T PRK09239 12 LAALRQSIDNIDAALIHMLAERFKCTQAVGVLKAEH 47 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 444555556666666667777777777776666654
No 405
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=26.14 E-value=6.9e+02 Score=25.22 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 252 KKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEK 289 (520)
Q Consensus 252 Kkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~k 289 (520)
-..+.+.+..+.+.+..|...-......|.+++.+-+.
T Consensus 45 E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqR 82 (207)
T PF05546_consen 45 EDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQR 82 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334444444444444444444444444444444443
No 406
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=26.05 E-value=3.7e+02 Score=22.46 Aligned_cols=59 Identities=19% Similarity=0.310 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de 306 (520)
|+++.+++..++.+-....-.+..+-+.++.---++.++-.+--++|.+++.++.++-+
T Consensus 8 l~eiqkKvrkLqsrAg~akm~LhDLAEgLP~~wtei~~VA~kt~~~yaeLD~~k~ELak 66 (71)
T COG5420 8 LEEIQKKVRKLQSRAGQAKMELHDLAEGLPVKWTEIMAVAEKTFEAYAELDAAKRELAK 66 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555665556555555555555555556666667777777777777777777766654
No 407
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=25.69 E-value=6.1e+02 Score=24.42 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Q 009998 294 FANIKELRKQRDEGNAYFFQYRALLNEAKAMSVK 327 (520)
Q Consensus 294 y~~i~~LRke~de~n~~f~~~r~~~~karela~~ 327 (520)
.++-..||..||.+-...-+....+..|..++.+
T Consensus 97 re~E~qLr~rRD~LErrl~~l~~tierAE~l~sq 130 (159)
T PF05384_consen 97 REREKQLRERRDELERRLRNLEETIERAENLVSQ 130 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566777777766666666777777666443
No 408
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=25.64 E-value=1.2e+03 Score=27.80 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhCChHhHH--HHHHHh
Q 009998 339 SEVEKYMTLWNNNKAFRD--DYEKRL 362 (520)
Q Consensus 339 ~eve~fm~~wn~~~~FR~--dY~k~~ 362 (520)
+++-|.+-+-|+.--=|- ||++..
T Consensus 457 AqLYHHVC~cNgeTPnRVmLD~yr~~ 482 (717)
T PF09730_consen 457 AQLYHHVCMCNGETPNRVMLDYYRQG 482 (717)
T ss_pred HHHHHHHHHccCCCCccHHHHHHHhh
Confidence 456677777777766663 777743
No 409
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=25.61 E-value=2.8e+02 Score=29.43 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 009998 277 EALQQEVNDVAEKR 290 (520)
Q Consensus 277 ~~Lqeel~al~~kr 290 (520)
..|+.+.+.+...+
T Consensus 37 ~~l~~~~~~~~~~~ 50 (378)
T TIGR01554 37 EELETDVEKLKEEI 50 (378)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 410
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=25.55 E-value=6.9e+02 Score=25.03 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=16.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 246 SDLDGVKKESQAVWAKISHLEGKVKALDEEIE 277 (520)
Q Consensus 246 ~eLd~lKkeldalr~kIkel~~k~~al~~ei~ 277 (520)
.+|..+..+.|.+.+.++.+...|..+...+.
T Consensus 69 ~~i~~~~~erdq~~~dL~s~E~sfsdl~~rye 100 (207)
T PF05010_consen 69 AEIQKLLKERDQAYADLNSLEKSFSDLHKRYE 100 (207)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34555555666665555555555544444333
No 411
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=25.44 E-value=3.8e+02 Score=21.93 Aligned_cols=35 Identities=14% Similarity=0.338 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 266 EGKVKALDEEIEALQQEVNDVAEKRDKAFANIKEL 300 (520)
Q Consensus 266 ~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~L 300 (520)
.+-+..+++.+-.-+.+++.+......++.++.++
T Consensus 17 e~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 17 EDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333333333333333333333
No 412
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=25.24 E-value=4.1e+02 Score=22.23 Aligned_cols=76 Identities=16% Similarity=0.183 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 009998 247 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQ-----QEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEA 321 (520)
Q Consensus 247 eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lq-----eel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~ka 321 (520)
.|..+...+.....+|..+......+...+.... ..+.....-++.+-..|..+...+......+-..+..+..+
T Consensus 6 ~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a 85 (123)
T PF02050_consen 6 ELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEA 85 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 009998 322 K 322 (520)
Q Consensus 322 r 322 (520)
.
T Consensus 86 ~ 86 (123)
T PF02050_consen 86 R 86 (123)
T ss_dssp H
T ss_pred H
No 413
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.11 E-value=3.1e+02 Score=30.54 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 105 RNQARMQLMDELRAKRVIRGDLAAQL 130 (520)
Q Consensus 105 l~q~R~~I~akl~~~r~~R~eL~~qL 130 (520)
+...|-.+..++..++.+|+.+..++
T Consensus 34 ld~~~r~~~~~~e~l~~~rn~~sk~i 59 (429)
T COG0172 34 LDEERRKLLRELEELQAERNELSKEI 59 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444
No 414
>PRK14161 heat shock protein GrpE; Provisional
Probab=25.06 E-value=3.1e+02 Score=26.82 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=13.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 009998 299 ELRKQRDEGNAYFFQYRALLNEAKA 323 (520)
Q Consensus 299 ~LRke~de~n~~f~~~r~~~~kare 323 (520)
+|+..+-...++|.++|+...+-++
T Consensus 37 elkd~~lR~~AefeN~rkR~~ke~~ 61 (178)
T PRK14161 37 ELKDKLIRTTAEIDNTRKRLEKARD 61 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455666666666555443
No 415
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=24.98 E-value=1.2e+03 Score=27.67 Aligned_cols=159 Identities=17% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 202 QILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQ 281 (520)
Q Consensus 202 klLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~~~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqe 281 (520)
++++||..++.- +.........|++.+...+..-...=..=.+||.+|..+...+.-+.+.. ....+-.+++.+..
T Consensus 67 r~~~ev~~l~~e---a~~L~~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~-~w~~l~~~v~~~~~ 142 (766)
T PF10191_consen 67 RVLREVDRLRQE---AASLQEQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEAD-NWSTLSAEVDDLFE 142 (766)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHH-HHHHhccCHHHHHHHHHHHHHHHHHH------HhCCh
Q 009998 282 EVNDVAEKRDKAFANIKELRKQRDEGNA--YFFQYRALLNEA-KAMSVKKDVQGLKELSNSEVEKYMTL------WNNNK 352 (520)
Q Consensus 282 el~al~~krdeay~~i~~LRke~de~n~--~f~~~r~~~~ka-rela~~~~v~el~~~~~~eve~fm~~------wn~~~ 352 (520)
. .....+-.++.+++.-..-... +|...+..+... ..|.+.-.-.=+..+....|+.-..+ ..--.
T Consensus 143 ~-----~d~~~~a~~l~~m~~sL~~l~~~pd~~~r~~~le~l~nrLEa~vsp~Lv~al~~~~~~~~~~~~~if~~i~R~~ 217 (766)
T PF10191_consen 143 S-----GDIAKIADRLAEMQRSLAVLQDVPDYEERRQQLEALKNRLEALVSPQLVQALNSRDVDAAKEYVKIFSSIGREP 217 (766)
T ss_pred c-----CCHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHcCCHH
Q ss_pred HhHHHHHHHhHHHHhhh
Q 009998 353 AFRDDYEKRLLQSLDMR 369 (520)
Q Consensus 353 ~FR~dY~k~~~~s~~~R 369 (520)
+|+..|.++....+.+.
T Consensus 218 ~l~~~Y~~~r~~~l~~~ 234 (766)
T PF10191_consen 218 QLEQYYCKCRKAPLQRL 234 (766)
T ss_pred HHHHHHHHHHHHHHHHH
No 416
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=24.90 E-value=6.6e+02 Score=24.53 Aligned_cols=95 Identities=18% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 009998 201 KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKA-LDEEIEAL 279 (520)
Q Consensus 201 KklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~~~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~a-l~~ei~~L 279 (520)
..+|.-+..|-.+.-. ++++..++...+ +..+..++..+..++..|..++..++.+...+...... ........
T Consensus 94 ~~~l~~y~~l~~s~~~----f~~rk~l~~e~~-~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~ 168 (189)
T PF10211_consen 94 RMTLDAYQTLYESSIA----FGMRKALQAEQG-KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKH 168 (189)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 009998 280 QQEVNDVAEKRDKAFANIKEL 300 (520)
Q Consensus 280 qeel~al~~krdeay~~i~~L 300 (520)
+++++.++...+.+-..+..+
T Consensus 169 ~~ei~~lk~~~~ql~~~l~~~ 189 (189)
T PF10211_consen 169 QEEIDFLKKQNQQLKAQLEQI 189 (189)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
No 417
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=24.74 E-value=1e+03 Score=26.77 Aligned_cols=78 Identities=8% Similarity=0.107 Sum_probs=45.1
Q ss_pred hhhhHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHh
Q 009998 234 KEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFA-----NIKELRKQRDEGN 308 (520)
Q Consensus 234 ke~~~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~-----~i~~LRke~de~n 308 (520)
+..+....+.+-..|+.+-..++.++. .+...+...-++++.|-+++..|+.++..+-. .=+.|+++||.+-
T Consensus 130 r~~vl~~a~~l~~~~n~~~~~L~~~~~---~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~~~~~~~g~~~ndL~DqRD~ll 206 (547)
T PRK08147 130 RQALIGKAEGLVNQFKTTDQYLRDQDK---GVNTAIGSSVDQINNYAKQIASLNDQITRLTGVGAGASPNDLLDQRDQLV 206 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHH
Confidence 333444444444445555666666655 34445555556677777777777777765432 2356777777766
Q ss_pred HHHHHH
Q 009998 309 AYFFQY 314 (520)
Q Consensus 309 ~~f~~~ 314 (520)
.++-++
T Consensus 207 ~eLS~~ 212 (547)
T PRK08147 207 SELNQI 212 (547)
T ss_pred HHHHhh
Confidence 544433
No 418
>PRK02119 hypothetical protein; Provisional
Probab=24.68 E-value=4.2e+02 Score=22.15 Aligned_cols=46 Identities=13% Similarity=0.162 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 255 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKEL 300 (520)
Q Consensus 255 ldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~L 300 (520)
+..|-.++.-..+-+..+++-+-.-+.+++.+......++.++..+
T Consensus 11 i~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 11 IAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444444444444444444444444444444443
No 419
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=24.68 E-value=3.5e+02 Score=26.26 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 009998 89 PKIRAKIDLTDREIQRRN 106 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~ 106 (520)
++++.+|...+.+|..|.
T Consensus 32 eeLr~EL~KvEeEI~TLr 49 (162)
T PF04201_consen 32 EELRSELAKVEEEIQTLR 49 (162)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555554443
No 420
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=24.45 E-value=3.7e+02 Score=21.48 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHH
Q 009998 119 KRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQ 156 (520)
Q Consensus 119 ~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~ 156 (520)
-...+..|++++++|..... .......++.|++
T Consensus 32 n~~~K~~Li~~~~~l~~~~d-----~~~~~~~~k~l~~ 64 (77)
T PF03993_consen 32 NLEKKEALIEEAEALAESED-----WKEAAEEIKELQQ 64 (77)
T ss_pred HHHHHHHHHHHHHHhccccc-----HHHHHHHHHHHHH
Confidence 34666777777776655332 3333344445544
No 421
>PRK11020 hypothetical protein; Provisional
Probab=24.41 E-value=3.8e+02 Score=24.70 Aligned_cols=22 Identities=18% Similarity=0.370 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 009998 270 KALDEEIEALQQEVNDVAEKRD 291 (520)
Q Consensus 270 ~al~~ei~~Lqeel~al~~krd 291 (520)
.....++..|..++..++.++.
T Consensus 34 ~qf~~E~~~l~k~I~~lk~~~~ 55 (118)
T PRK11020 34 AQFEKEKATLEAEIARLKEVQS 55 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555544444444
No 422
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=24.31 E-value=1.3e+03 Score=27.62 Aligned_cols=13 Identities=8% Similarity=0.120 Sum_probs=5.6
Q ss_pred hHHHHHHHHHHHH
Q 009998 89 PKIRAKIDLTDRE 101 (520)
Q Consensus 89 ~~lkakI~~a~ke 101 (520)
..+..-+..+-.+
T Consensus 377 ~si~~~LStfS~~ 389 (771)
T TIGR01069 377 QSIEQNLSTFSGH 389 (771)
T ss_pred hHHhhhhhHHHHH
Confidence 3444444444443
No 423
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=24.23 E-value=6.2e+02 Score=24.01 Aligned_cols=17 Identities=18% Similarity=-0.054 Sum_probs=10.5
Q ss_pred HhhhhhccCCCCCCCCC
Q 009998 366 LDMRQLSRDGRIRNPDE 382 (520)
Q Consensus 366 ~~~R~~~~DGR~~~pde 382 (520)
.++-+++.|+=.++-|.
T Consensus 101 av~allD~d~l~l~~dg 117 (155)
T PF06810_consen 101 AVKALLDLDKLKLDDDG 117 (155)
T ss_pred HHHHhcCHHHeeeCCCc
Confidence 34455666766666666
No 424
>PHA02414 hypothetical protein
Probab=24.16 E-value=5.3e+02 Score=23.23 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q 009998 176 EEELDDLIRSLQYRIQHEIIP 196 (520)
Q Consensus 176 veEID~rI~~LE~~IqhgSLs 196 (520)
+..|-.+|..|+..||||.+.
T Consensus 6 in~Lv~~v~~ledKiQ~Gelt 26 (111)
T PHA02414 6 INNLVSQVETLEDKIQEGELT 26 (111)
T ss_pred HHHHHHHHHHHHHHHhcCccc
Confidence 344566788888888888775
No 425
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=24.14 E-value=4.6e+02 Score=22.50 Aligned_cols=20 Identities=10% Similarity=0.250 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 009998 89 PKIRAKIDLTDREIQRRNQA 108 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~ 108 (520)
+.+...|+.++.-+......
T Consensus 8 ~ev~~sl~~l~~~~~~~~~~ 27 (97)
T PF09177_consen 8 DEVQSSLDRLESLYRRWQRL 27 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44555555555554444433
No 426
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=24.12 E-value=4.7e+02 Score=22.61 Aligned_cols=46 Identities=22% Similarity=0.293 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 252 KKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANI 297 (520)
Q Consensus 252 Kkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i 297 (520)
..+++.+......|...+.......+.|..-..++...-+.+.+.|
T Consensus 38 e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~I 83 (89)
T PF13747_consen 38 EEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETI 83 (89)
T ss_pred HHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333344444444444444444444443
No 427
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=23.70 E-value=1.5e+03 Score=28.28 Aligned_cols=44 Identities=18% Similarity=0.310 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 250 GVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKA 293 (520)
Q Consensus 250 ~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdea 293 (520)
.+.++...++.+|+.+.+.+..-..++..|....+.+..+....
T Consensus 478 Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~ 521 (1195)
T KOG4643|consen 478 QLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTC 521 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544445554444444444444433
No 428
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=23.67 E-value=3e+02 Score=26.59 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 279 LQQEVNDVAEKRDKAFANIKELRKQRDEG 307 (520)
Q Consensus 279 Lqeel~al~~krdeay~~i~~LRke~de~ 307 (520)
|....+.+......--..|..|+.+++..
T Consensus 147 l~~~~~~l~~~l~~~~g~I~~L~~~I~~~ 175 (184)
T PF05791_consen 147 LKTDVDELQSILAGENGDIPQLQKQIENL 175 (184)
T ss_dssp HHHHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHhHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 33333333333333334444444444443
No 429
>PHA03386 P10 fibrous body protein; Provisional
Probab=23.17 E-value=4.4e+02 Score=23.46 Aligned_cols=14 Identities=21% Similarity=0.026 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 009998 294 FANIKELRKQRDEG 307 (520)
Q Consensus 294 y~~i~~LRke~de~ 307 (520)
+..+..+-.+++..
T Consensus 35 ~~~LDa~~~qL~~l 48 (94)
T PHA03386 35 SQPLDGLPAQLTEL 48 (94)
T ss_pred chhhhhHHHHHHHH
Confidence 33344444444443
No 430
>PRK00373 V-type ATP synthase subunit D; Reviewed
Probab=23.10 E-value=5.7e+02 Score=25.06 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009998 277 EALQQEVNDVAEKRDKAFANIKELRKQRDEGN 308 (520)
Q Consensus 277 ~~Lqeel~al~~krdeay~~i~~LRke~de~n 308 (520)
+-|..+.+++..+.-.+...+..+|.+.+..+
T Consensus 28 ~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~ 59 (204)
T PRK00373 28 KLLKDKRDELIMEFFDILDEAKKLREEVEEEL 59 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444555544443
No 431
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.09 E-value=6.9e+02 Score=30.10 Aligned_cols=100 Identities=18% Similarity=0.178 Sum_probs=65.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANI---------KELRKQRDEGNAYFFQYRALL 318 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i---------~~LRke~de~n~~f~~~r~~~ 318 (520)
+..|+....++.+....+.-++-..+.++.+|+++.+++.....--|+.| -+|.+.+++++. -.+--.+
T Consensus 618 v~TL~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~~Al~~i~~~~fa~ID~~Sa~rqIael~~~lE~L~~--t~~~~~~ 695 (1104)
T COG4913 618 VETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQANALAHIQALNFASIDLPSAQRQIAELQARLERLTH--TQSDIAI 695 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcchhhcchhhHHHHHHHHHHHHHHhcC--ChhHHHH
Confidence 44566666666666666666677888899999999999887655444443 344444444433 1223344
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHHh
Q 009998 319 NEAKAMSVKKDVQGLKELSNSEVEKYMTLWN 349 (520)
Q Consensus 319 ~karela~~~~v~el~~~~~~eve~fm~~wn 349 (520)
.++..-+++--+..|+.+|.+||+.-.++-|
T Consensus 696 ~~~~l~aaQT~~~vler~~~~~~~e~~~~k~ 726 (1104)
T COG4913 696 AKAALDAAQTRQKVLERQYQQEVTECAGLKK 726 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556667788999999999987666543
No 432
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=22.88 E-value=8.4e+02 Score=25.03 Aligned_cols=27 Identities=19% Similarity=0.147 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 009998 284 NDVAEKRDKAFANIKELRKQRDEGNAY 310 (520)
Q Consensus 284 ~al~~krdeay~~i~~LRke~de~n~~ 310 (520)
.-|..+||....+..+|-.+.......
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~ 108 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQT 108 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666655554443
No 433
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=22.67 E-value=5.7e+02 Score=23.05 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 252 KKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 252 Kkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~d 305 (520)
|+-.-+=+++-..|.+.+..-...|..+..+++.+.=.-+.+-..+..|..+++
T Consensus 18 KKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 18 KKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444555555555555666666666666666666666666666665
No 434
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=22.59 E-value=3.3e+02 Score=27.63 Aligned_cols=8 Identities=38% Similarity=0.588 Sum_probs=5.7
Q ss_pred eeecCCCC
Q 009998 37 IIFGSHGG 44 (520)
Q Consensus 37 i~fgs~~~ 44 (520)
=.||.||+
T Consensus 64 k~fGRYG~ 71 (217)
T PF10147_consen 64 KLFGRYGL 71 (217)
T ss_pred HHHHhhhh
Confidence 36888883
No 435
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=22.49 E-value=5.5e+02 Score=29.54 Aligned_cols=59 Identities=12% Similarity=0.263 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HH-----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 009998 260 AKISHLEGKVKALDEEIEALQQEVND--VA-----EKRDKAFANIKELRKQRDEGNAYFFQYRALL 318 (520)
Q Consensus 260 ~kIkel~~k~~al~~ei~~Lqeel~a--l~-----~krdeay~~i~~LRke~de~n~~f~~~r~~~ 318 (520)
.+++.++..+.++..++..|..++.. ++ ....+++.++.++..++++.+..|-+.-..+
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~ 628 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQL 628 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555532 11 2566777778888888888888777666543
No 436
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=22.37 E-value=8.9e+02 Score=25.18 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHH
Q 009998 252 KKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA-YFFQYRALLN 319 (520)
Q Consensus 252 Kkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~-~f~~~r~~~~ 319 (520)
|.-+..+-..|++|.+....+..+-+.|+.....+..+-+++...+..||.++-+.+. -.|+++....
T Consensus 89 KaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~~~~v~ee 157 (292)
T KOG4005|consen 89 KARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQHNTRVIEE 157 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHhhHHHhh
Confidence 3444455566778888888888888888888888888888888888888888877766 4555555443
No 437
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=22.19 E-value=1e+02 Score=35.98 Aligned_cols=46 Identities=20% Similarity=0.385 Sum_probs=27.2
Q ss_pred HHHHHH---HHHHHHHHHHHHHhC-ChHhHHHHHHHhHHHHhhhhhccCCCCC
Q 009998 330 VQGLKE---LSNSEVEKYMTLWNN-NKAFRDDYEKRLLQSLDMRQLSRDGRIR 378 (520)
Q Consensus 330 v~el~~---~~~~eve~fm~~wn~-~~~FR~dY~k~~~~s~~~R~~~~DGR~~ 378 (520)
+.+|+. -+..-..|.++.|+. ..+||+=...-.=+..+. ..+||++
T Consensus 608 ~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~llGyki~~---~~~~~~r 657 (722)
T PF05557_consen 608 IAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSLLGYKIDF---MPNGRVR 657 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEE---ETTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeee---cCCCeEE
Confidence 444443 345566788888864 567887665543344442 5666654
No 438
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=22.14 E-value=2e+02 Score=22.34 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 89 PKIRAKIDLTDREIQRRNQARMQLM 113 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~ 113 (520)
+.|..+|+.++.+|..|...|..+.
T Consensus 15 d~IEqkiedid~qIaeLe~KR~~Lv 39 (46)
T PF08946_consen 15 DNIEQKIEDIDEQIAELEAKRQRLV 39 (46)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777666665544
No 439
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=22.12 E-value=4.3e+02 Score=30.54 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=15.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHHH
Q 009998 327 KKDVQGLKELSNSEVEKYMTLW 348 (520)
Q Consensus 327 ~~~v~el~~~~~~eve~fm~~w 348 (520)
.|.+..|-.+.+..+-.+|..+
T Consensus 279 gG~L~gll~~rd~~l~~~~~~L 300 (627)
T PRK06665 279 TGKLGALIELRDTDIRDEINEL 300 (627)
T ss_pred CcchHhHHHHHHhhHHHHHHHH
Confidence 4677777777777777777666
No 440
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=22.11 E-value=1.2e+03 Score=26.45 Aligned_cols=71 Identities=20% Similarity=0.210 Sum_probs=32.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALL 318 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~ 318 (520)
.+.+.+..+.+-.++.++..+++.+.+++..+.+....+.+-.+--..++.++.....+....+-....++
T Consensus 370 ~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dL 440 (493)
T KOG0804|consen 370 SSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDL 440 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555555555554444444444444444444444444444443333333333
No 441
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=21.99 E-value=5.3e+02 Score=22.38 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 009998 252 KKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA 323 (520)
Q Consensus 252 Kkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~kare 323 (520)
....+.+...+......+..+...+..|..+......+.=.+-...+.|..+...++..+-.++..+.+..+
T Consensus 9 ~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 9 EQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333333333333333333333344444444444444444444444444444444444444444444444443
No 442
>PRK11020 hypothetical protein; Provisional
Probab=21.90 E-value=5.2e+02 Score=23.83 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 009998 286 VAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 286 l~~krdeay~~i~~LRke~de 306 (520)
...+++.+..+|..|+.++..
T Consensus 36 f~~E~~~l~k~I~~lk~~~~~ 56 (118)
T PRK11020 36 FEKEKATLEAEIARLKEVQSQ 56 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555556665543
No 443
>PRK07857 hypothetical protein; Provisional
Probab=21.77 E-value=4.3e+02 Score=23.87 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKR 120 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~akl~~~r 120 (520)
..+..+|+.++.+|-.+-..|..+..+|...+
T Consensus 31 ~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K 62 (106)
T PRK07857 31 DELREEIDRLDAEILALVKRRTEVSQAIGKAR 62 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66888888888888888888888777776443
No 444
>PRK04406 hypothetical protein; Provisional
Probab=21.64 E-value=4.9e+02 Score=21.89 Aligned_cols=46 Identities=9% Similarity=0.245 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 255 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKEL 300 (520)
Q Consensus 255 ldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~L 300 (520)
+..|..++.-..+-+..+++.+-.-+.+++.+..+...++.++.++
T Consensus 13 i~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 13 INDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334334444444444444444444444444444444444444443
No 445
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.43 E-value=2.6e+02 Score=24.58 Aligned_cols=40 Identities=25% Similarity=0.445 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVA 287 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~ 287 (520)
+.-+.+.++.+...++.+.+.+..+..+++.+...+..++
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~ 128 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQLQ 128 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 446
>TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2. This model represents one of two separate clades of the chorismate mutase domain of the gamma and beta and epsilon proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain. It is also found in Aquifex aolicus.
Probab=21.36 E-value=2.5e+02 Score=23.04 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 90 KIRAKIDLTDREIQRRNQARMQLMDELRAK 119 (520)
Q Consensus 90 ~lkakI~~a~keI~kl~q~R~~I~akl~~~ 119 (520)
.+..+|+.++.+|-.+-..|..+..++...
T Consensus 3 ~lR~~ID~iD~~iv~Ll~~R~~~~~~i~~~ 32 (76)
T TIGR01807 3 ELRNKIDAIDDRILDLLSERATYAQAVGEL 32 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888887777777666533
No 447
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=21.26 E-value=90 Score=25.37 Aligned_cols=19 Identities=32% Similarity=0.179 Sum_probs=16.0
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 009998 171 GICSSEEELDDLIRSLQYR 189 (520)
Q Consensus 171 ~~f~SveEID~rI~~LE~~ 189 (520)
....|++||+.+|.-|+..
T Consensus 18 Ls~lSv~EL~~RIa~L~aE 36 (59)
T PF06698_consen 18 LSLLSVEELEERIALLEAE 36 (59)
T ss_pred chhcCHHHHHHHHHHHHHH
Confidence 3578999999999999853
No 448
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=21.23 E-value=9.4e+02 Score=25.02 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 009998 182 LIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMA 219 (520)
Q Consensus 182 rI~~LE~~IqhgSLsL~EEKklLkEIk~Lkk~Rk~v~a 219 (520)
.|+.|..+|+.-.=+-.+ |+..|...+..+..
T Consensus 121 qIa~L~rqlq~lk~~qqd------Eldel~e~~~~el~ 152 (258)
T PF15397_consen 121 QIANLVRQLQQLKDSQQD------ELDELNEMRQMELA 152 (258)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 466666666554433333 34444444554444
No 449
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.19 E-value=9e+02 Score=24.79 Aligned_cols=44 Identities=14% Similarity=0.149 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 263 SHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 263 kel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de 306 (520)
..+.+.+-..=.+|-.+-.-+.++-..|+.+-..+..++.....
T Consensus 131 ~~l~~~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k 174 (243)
T cd07666 131 KGLSEQLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALAN 174 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444555555666666666666555555555544444
No 450
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=21.16 E-value=4.6e+02 Score=21.41 Aligned_cols=46 Identities=26% Similarity=0.371 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 261 KISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 261 kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de 306 (520)
.|.+|+.++.=...-|..|+.-+..-...++.+-..+..|+.++..
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555555555555555555555555444433
No 451
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=21.10 E-value=8.2e+02 Score=24.24 Aligned_cols=33 Identities=12% Similarity=0.300 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 262 ISHLEGKVKALDEEIEALQQEVNDVAEKRDKAF 294 (520)
Q Consensus 262 Ikel~~k~~al~~ei~~Lqeel~al~~krdeay 294 (520)
++.++..++.+........+-+..++..+...|
T Consensus 166 i~~iN~~y~~~~~~~~~fn~~t~~yN~~K~~~y 198 (204)
T PF10368_consen 166 IKAINQSYKEVNKQKEKFNEYTKKYNEEKQDFY 198 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333344444333333
No 452
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=20.84 E-value=1.8e+02 Score=25.90 Aligned_cols=71 Identities=8% Similarity=0.195 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHh
Q 009998 90 KIRAKIDLTDREIQRRNQARMQ-LMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGK 160 (520)
Q Consensus 90 ~lkakI~~a~keI~kl~q~R~~-I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~k 160 (520)
.+....+.++.++..|+...+. .+.-+...|..|..+..++..|..+.......+.....++..|+..+..
T Consensus 12 ~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~ 83 (100)
T PF06428_consen 12 EAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMES 83 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777777654 4445566677777777777777777766666665555566666555543
No 453
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=20.79 E-value=1e+03 Score=25.36 Aligned_cols=27 Identities=7% Similarity=0.070 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 279 LQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 279 Lqeel~al~~krdeay~~i~~LRke~d 305 (520)
.++.++++...+++....+..|..+++
T Consensus 81 ~~~r~~~~~~i~~~~~~q~~~l~~~~~ 107 (332)
T TIGR01541 81 QRERLDARLQIDRTFRKQQRDLNKAMT 107 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455566666666666666666666654
No 454
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=20.72 E-value=7.8e+02 Score=23.84 Aligned_cols=55 Identities=13% Similarity=0.220 Sum_probs=38.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEK-RDKAFANIKELRK 302 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~k-rdeay~~i~~LRk 302 (520)
+.+++.++..|...|+.+..-+.-+..+++-+..++-....- -+++-+++.+|+.
T Consensus 74 ~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~ 129 (157)
T COG3352 74 LQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKM 129 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 667788888888888888888888888888777766555444 4444444444443
No 455
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=20.61 E-value=7.4e+02 Score=28.44 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHH
Q 009998 270 KALDEEIEALQQEVNDVAEKRDKAF---ANIKELRKQRDEGNAYF 311 (520)
Q Consensus 270 ~al~~ei~~Lqeel~al~~krdeay---~~i~~LRke~de~n~~f 311 (520)
...-++++.|-.++..++.++-.+- ..-+.|+++||.+-+++
T Consensus 166 ~~~V~~vNsLl~qIa~lN~qI~~~~~~g~~~NdLlDqRD~Lv~eL 210 (552)
T COG1256 166 AATVDEVNSLLKQIADLNKQIRKVKAAGNDPNDLLDQRDQLVDEL 210 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHH
Confidence 3334444555555555555554441 23355555555554433
No 456
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=20.43 E-value=1e+03 Score=25.22 Aligned_cols=45 Identities=20% Similarity=0.317 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHhh
Q 009998 117 RAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKL 161 (520)
Q Consensus 117 ~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~kl 161 (520)
+.+|+++..+.+++..|...+..+|....+.-+||.-|++.|-.+
T Consensus 244 qKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 244 QKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999999999999999999999999999998877543
No 457
>TIGR01801 CM_A chorismate mutase domain of gram positive AroA protein. This model represents a small clade of chorismate mutase domains N-terminally fused to the first enzyme in the chorismate pathway, 2-dehydro-3-deoxyphosphoheptanoate aldolase (DAHP synthetase, AroA) which are found in some gram positive species and Deinococcus. Only in Deinococcus, where this domain is the sole CM domain in the genome can a trusted assignment of function be made. In the other species there is at least one other trusted CM domain present. The similarity between the Deinococcus gene and the others in this clade is sufficiently strong (~44% identity), that the whole clade can be trusted to be functional. The possibility exists, however, that in the gram positive species the fusion to the first enzyme in the pathway has evolved a separate, regulatory role.
Probab=20.41 E-value=2.6e+02 Score=24.71 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKR 120 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~akl~~~r 120 (520)
..+..+|+.++.+|-.+-..|..+..+|...+
T Consensus 7 ~~lR~~ID~ID~eIl~LL~eR~~~~~~Ig~~K 38 (102)
T TIGR01801 7 EDLRAEVDQLNRQILALISRRGEVVAQIGHAK 38 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888888888888877776443
No 458
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=20.11 E-value=1.3e+03 Score=26.23 Aligned_cols=113 Identities=16% Similarity=0.260 Sum_probs=67.5
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhccchhhHHHHHHHHHHHHHHH
Q 009998 186 LQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHL 265 (520)
Q Consensus 186 LE~~IqhgSLsL~EEKklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~~~d~iK~l~~eLd~lKkeldalr~kIkel 265 (520)
||.+|.-=-|.....-.+|.=|..|+..-+.++.- + -..|-++..+...+..+-.-+...++.+..-|..-..|
T Consensus 343 Le~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIed-----K-Y~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetL 416 (527)
T PF15066_consen 343 LEKKVKELQMKITKQQVFVDIINKLKENIEELIED-----K-YRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETL 416 (527)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh-----H-hHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33333333455566667777788777776665531 1 12233344444444444444666777777777766667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 266 EGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 304 (520)
Q Consensus 266 ~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~ 304 (520)
.=+++.++..|-.||+...+.-+++++....--++-+-+
T Consensus 417 qlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~L 455 (527)
T PF15066_consen 417 QLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTL 455 (527)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 777777777778888877777777776654444443333
No 459
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=20.10 E-value=2.5e+02 Score=22.51 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAE 288 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~ 288 (520)
+..++.++..++.++..+..+...++.++..|...-+.+..
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~ 59 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEK 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
No 460
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=20.07 E-value=7.9e+02 Score=25.18 Aligned_cols=44 Identities=30% Similarity=0.250 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Q 009998 294 FANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLW 348 (520)
Q Consensus 294 y~~i~~LRke~de~n~~f~~~r~~~~karela~~~~v~el~~~~~~eve~fm~~w 348 (520)
-..|..|..++.++.. ++..+...|+|.+.+.+ ..+||.+...+
T Consensus 122 ~~~i~~l~~~I~~ll~----------~aE~LGeeG~VdeA~~~-~~~~e~Lk~ek 165 (254)
T PF03194_consen 122 AEKIDELDEKIGELLK----------EAEELGEEGDVDEAQKL-MEEVEKLKEEK 165 (254)
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHCCCHHHHHHH-HHHHHHHHHHH
Confidence 3445555555555444 78888889999999977 78888887665
Done!