Query 009998
Match_columns 520
No_of_seqs 140 out of 179
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 17:38:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009998.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009998hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.1 0.0059 2E-07 56.9 33.6 70 89-158 2-71 (284)
2 1c1g_A Tropomyosin; contractIl 97.9 0.013 4.4E-07 54.6 33.2 46 91-136 18-63 (284)
3 3na7_A HP0958; flagellar bioge 97.8 0.0077 2.6E-07 59.3 24.7 171 112-317 16-186 (256)
4 1i84_S Smooth muscle myosin he 97.0 0.0022 7.6E-08 75.5 10.6 44 91-134 862-905 (1184)
5 1i84_S Smooth muscle myosin he 96.9 0.00014 4.7E-09 85.7 0.0 41 92-132 912-952 (1184)
6 3na7_A HP0958; flagellar bioge 96.9 0.37 1.3E-05 47.2 24.8 95 95-191 13-107 (256)
7 2dfs_A Myosin-5A; myosin-V, in 94.0 9.7 0.00033 44.7 25.1 113 177-309 924-1044(1080)
8 2dfs_A Myosin-5A; myosin-V, in 93.6 4.3 0.00015 47.6 21.1 27 174-200 914-940 (1080)
9 3vkg_A Dynein heavy chain, cyt 90.7 30 0.001 45.3 24.9 58 248-305 2030-2087(3245)
10 3u59_A Tropomyosin beta chain; 88.9 9.7 0.00033 32.2 13.1 62 248-309 4-65 (101)
11 3q8t_A Beclin-1; autophagy, AT 88.8 5.2 0.00018 33.9 11.3 78 198-302 18-95 (96)
12 3vkg_A Dynein heavy chain, cyt 88.7 33 0.0011 44.8 23.2 53 244-296 2012-2064(3245)
13 2jee_A YIIU; FTSZ, septum, coi 88.4 3.4 0.00012 34.3 9.5 61 89-149 9-76 (81)
14 2eqb_B RAB guanine nucleotide 85.9 4.3 0.00015 34.8 9.0 60 254-313 6-65 (97)
15 1ic2_A Tropomyosin alpha chain 85.7 12 0.00041 30.4 11.4 59 251-309 4-62 (81)
16 3bas_A Myosin heavy chain, str 85.6 9.2 0.00031 31.8 10.9 70 240-309 15-84 (89)
17 3hnw_A Uncharacterized protein 85.5 5.5 0.00019 35.9 10.1 61 249-309 71-131 (138)
18 3oja_B Anopheles plasmodium-re 84.9 27 0.00093 37.0 17.1 31 254-284 510-540 (597)
19 3ol1_A Vimentin; structural ge 83.2 22 0.00077 30.9 14.6 62 248-309 43-104 (119)
20 2jee_A YIIU; FTSZ, septum, coi 82.7 11 0.00037 31.3 9.8 53 251-303 25-77 (81)
21 3oja_B Anopheles plasmodium-re 82.7 14 0.00047 39.3 13.6 6 87-92 397-402 (597)
22 3ol1_A Vimentin; structural ge 82.5 24 0.00082 30.7 13.8 62 248-309 22-83 (119)
23 3u1c_A Tropomyosin alpha-1 cha 82.1 22 0.00076 30.1 13.0 20 250-269 6-25 (101)
24 3u59_A Tropomyosin beta chain; 81.7 23 0.00077 29.9 13.8 70 89-158 5-74 (101)
25 3a7p_A Autophagy protein 16; c 79.5 23 0.0008 32.5 11.9 67 248-314 70-136 (152)
26 3ghg_A Fibrinogen alpha chain; 77.6 12 0.00043 40.5 10.9 13 89-101 49-61 (562)
27 3i00_A HIP-I, huntingtin-inter 77.3 20 0.00067 31.6 10.4 70 232-307 11-80 (120)
28 3hnw_A Uncharacterized protein 76.9 17 0.00058 32.6 10.1 14 175-188 26-39 (138)
29 3swk_A Vimentin; cytoskeleton, 76.5 19 0.00065 29.8 9.6 36 270-305 45-80 (86)
30 1ic2_A Tropomyosin alpha chain 76.4 28 0.00095 28.2 10.4 50 253-302 20-69 (81)
31 1jcd_A Major outer membrane li 76.3 12 0.0004 28.6 7.4 44 255-298 6-49 (52)
32 2ocy_A RAB guanine nucleotide 75.9 27 0.00091 32.1 11.2 55 259-313 43-97 (154)
33 3ghg_A Fibrinogen alpha chain; 75.3 38 0.0013 36.8 13.7 44 264-307 114-157 (562)
34 4etp_A Kinesin-like protein KA 73.9 9.6 0.00033 39.8 8.8 56 247-302 4-59 (403)
35 3u06_A Protein claret segregat 72.9 9.5 0.00033 40.0 8.5 58 245-302 2-59 (412)
36 1l8d_A DNA double-strand break 70.6 46 0.0016 27.8 10.9 23 280-302 70-92 (112)
37 1wle_A Seryl-tRNA synthetase; 69.4 46 0.0016 35.8 13.0 67 239-305 70-147 (501)
38 3cvf_A Homer-3, homer protein 68.8 33 0.0011 28.2 9.0 67 254-320 7-73 (79)
39 2v4h_A NF-kappa-B essential mo 68.1 54 0.0018 28.6 10.7 64 254-321 25-88 (110)
40 3u1c_A Tropomyosin alpha-1 cha 66.0 60 0.002 27.4 13.6 49 256-304 26-74 (101)
41 2fxo_A Myosin heavy chain, car 64.6 73 0.0025 27.8 15.8 43 264-306 80-122 (129)
42 3a7p_A Autophagy protein 16; c 63.7 46 0.0016 30.5 9.9 10 204-213 67-76 (152)
43 3mq9_A Bone marrow stromal ant 63.1 1.4E+02 0.0048 30.7 15.2 67 251-320 402-468 (471)
44 3swk_A Vimentin; cytoskeleton, 61.9 66 0.0023 26.5 11.5 57 250-306 4-60 (86)
45 2q6q_A Spindle POLE BODY compo 61.8 17 0.00059 29.2 5.8 27 237-263 8-34 (74)
46 2dq0_A Seryl-tRNA synthetase; 61.2 29 0.001 36.7 9.5 19 201-219 41-59 (455)
47 2v4h_A NF-kappa-B essential mo 60.6 85 0.0029 27.3 11.7 57 88-148 26-82 (110)
48 2v71_A Nuclear distribution pr 60.4 1.2E+02 0.004 28.8 18.2 56 250-305 60-119 (189)
49 2lw1_A ABC transporter ATP-bin 60.3 33 0.0011 28.1 7.7 55 248-302 24-84 (89)
50 4e61_A Protein BIM1; EB1-like 60.0 34 0.0012 29.7 7.9 32 269-300 20-51 (106)
51 3cvf_A Homer-3, homer protein 58.8 54 0.0018 27.0 8.5 29 133-161 46-74 (79)
52 1jcd_A Major outer membrane li 58.1 37 0.0013 25.8 6.9 44 248-291 6-49 (52)
53 2dq0_A Seryl-tRNA synthetase; 57.3 41 0.0014 35.6 9.7 69 239-307 31-102 (455)
54 3cve_A Homer protein homolog 1 55.5 81 0.0028 25.5 10.9 63 258-320 5-67 (72)
55 2w83_C C-JUN-amino-terminal ki 55.4 74 0.0025 26.0 8.7 49 100-148 9-57 (77)
56 2efr_A General control protein 54.7 1.3E+02 0.0044 27.6 16.5 49 271-319 102-150 (155)
57 3lay_A Zinc resistance-associa 53.2 48 0.0016 30.9 8.4 63 99-161 70-132 (175)
58 1deq_A Fibrinogen (alpha chain 52.6 1.1E+02 0.0038 31.9 11.7 23 90-112 64-86 (390)
59 3o0z_A RHO-associated protein 52.4 1.5E+02 0.0051 27.6 15.4 35 268-302 98-132 (168)
60 3lay_A Zinc resistance-associa 52.2 1.2E+02 0.0042 28.1 11.0 24 288-311 113-136 (175)
61 1wle_A Seryl-tRNA synthetase; 52.1 68 0.0023 34.5 10.5 31 102-132 72-102 (501)
62 3qne_A Seryl-tRNA synthetase, 51.6 75 0.0026 34.1 10.7 18 201-218 43-60 (485)
63 3qne_A Seryl-tRNA synthetase, 51.4 46 0.0016 35.7 9.0 30 276-305 73-102 (485)
64 3q8t_A Beclin-1; autophagy, AT 51.4 1.1E+02 0.0037 25.7 12.8 59 246-304 11-69 (96)
65 1m1j_B Fibrinogen beta chain; 48.8 2.7E+02 0.0093 29.7 14.3 18 91-108 98-115 (464)
66 3cve_A Homer protein homolog 1 48.4 1.1E+02 0.0036 24.8 10.3 28 134-161 41-68 (72)
67 1wt6_A Myotonin-protein kinase 48.2 1.2E+02 0.004 25.1 9.4 57 94-154 15-71 (81)
68 1ses_A Seryl-tRNA synthetase; 47.1 37 0.0013 35.5 7.4 66 240-305 29-95 (421)
69 2dq3_A Seryl-tRNA synthetase; 44.8 32 0.0011 36.0 6.5 60 201-277 40-99 (425)
70 4e61_A Protein BIM1; EB1-like 43.1 85 0.0029 27.1 7.7 45 89-133 7-51 (106)
71 2e7s_A RAB guanine nucleotide 42.4 36 0.0012 30.6 5.5 52 262-313 34-85 (135)
72 1ik9_A DNA repair protein XRCC 42.3 2.2E+02 0.0076 27.1 11.4 78 81-158 111-198 (213)
73 4emc_A Monopolin complex subun 41.9 1.2E+02 0.004 28.8 9.1 71 89-159 9-79 (190)
74 2efr_A General control protein 41.7 2.1E+02 0.0071 26.2 18.6 31 275-305 99-129 (155)
75 4dnd_A Syntaxin-10, SYN10; str 41.0 1.9E+02 0.0064 25.5 10.2 18 89-106 34-51 (130)
76 2js5_A Uncharacterized protein 40.5 58 0.002 26.3 5.8 61 246-306 3-63 (71)
77 2yy0_A C-MYC-binding protein; 40.4 35 0.0012 25.8 4.4 28 247-274 20-47 (53)
78 2wt7_B Transcription factor MA 40.4 1.3E+02 0.0043 25.3 8.1 11 206-216 22-32 (90)
79 1m1j_A Fibrinogen alpha subuni 40.2 2.3E+02 0.0079 30.4 11.9 97 88-192 60-157 (491)
80 2d4y_A HAP1, flagellar HOOK-as 39.5 1.3E+02 0.0043 31.5 10.0 71 240-313 72-147 (463)
81 2eqb_B RAB guanine nucleotide 39.1 1.8E+02 0.0062 24.7 12.7 65 245-309 4-69 (97)
82 3lss_A Seryl-tRNA synthetase; 38.5 1.2E+02 0.004 32.6 9.7 22 283-304 113-134 (484)
83 2p22_C Protein SRN2; endosome, 38.1 2.6E+02 0.0088 26.2 12.3 15 330-344 137-151 (192)
84 2zqm_A Prefoldin beta subunit 38.0 1.7E+02 0.0059 24.2 11.3 11 203-213 11-21 (117)
85 1x8y_A Lamin A/C; structural p 37.3 1.7E+02 0.0057 23.9 9.0 20 248-267 5-24 (86)
86 2odv_A Plectin 1, HD1; plakin 37.0 2.9E+02 0.0099 26.5 18.4 122 172-304 91-220 (235)
87 1ses_A Seryl-tRNA synthetase; 37.0 76 0.0026 33.2 7.8 23 270-292 74-96 (421)
88 2dq3_A Seryl-tRNA synthetase; 36.8 39 0.0013 35.4 5.6 66 239-304 30-98 (425)
89 1gqe_A Release factor 2, RF2; 36.3 3.6E+02 0.012 27.8 12.6 46 173-218 24-71 (365)
90 2l5g_B Putative uncharacterize 35.8 38 0.0013 24.7 3.6 26 240-265 10-35 (42)
91 3rmi_A Chorismate mutase prote 35.3 2.1E+02 0.0072 24.4 10.2 76 268-343 13-90 (114)
92 3csx_A Putative uncharacterize 35.1 79 0.0027 26.1 5.9 60 247-306 16-75 (81)
93 3iox_A AGI/II, PA; alpha helix 34.7 4.6E+02 0.016 28.2 16.8 35 337-390 95-129 (497)
94 1wt6_A Myotonin-protein kinase 33.2 1.3E+02 0.0043 24.9 6.8 30 252-281 37-66 (81)
95 3o0z_A RHO-associated protein 32.8 3E+02 0.01 25.5 19.7 17 92-108 5-21 (168)
96 2lw1_A ABC transporter ATP-bin 32.3 1.6E+02 0.0054 24.0 7.5 59 251-312 20-80 (89)
97 3tul_A Cell invasion protein S 32.1 1.5E+02 0.005 27.2 7.7 25 248-272 71-95 (158)
98 4fye_A SIDF, inhibitor of grow 31.4 4.4E+02 0.015 27.5 12.1 78 248-327 525-615 (761)
99 3m91_A Proteasome-associated A 31.2 1.4E+02 0.005 22.4 6.4 34 251-284 14-47 (51)
100 3iv1_A Tumor susceptibility ge 31.1 2.2E+02 0.0074 23.3 9.6 41 248-288 20-60 (78)
101 3kyp_A Pfnaps, nucleosome asse 30.6 1.1E+02 0.0038 28.5 7.1 42 276-320 5-46 (193)
102 2p22_C Protein SRN2; endosome, 30.4 3.4E+02 0.012 25.4 13.1 22 338-362 157-178 (192)
103 4emc_A Monopolin complex subun 30.2 1.8E+02 0.0063 27.5 8.3 22 269-290 36-57 (190)
104 4etp_A Kinesin-like protein KA 30.1 1.3E+02 0.0045 31.2 8.2 37 254-290 4-40 (403)
105 1lwu_C Fibrinogen gamma chain; 30.0 1.3E+02 0.0045 30.6 8.0 41 260-300 12-52 (323)
106 2yy0_A C-MYC-binding protein; 29.7 91 0.0031 23.5 5.1 16 249-264 29-44 (53)
107 2ke4_A CDC42-interacting prote 29.6 2.2E+02 0.0074 24.0 8.0 29 89-117 18-46 (98)
108 2v66_B Nuclear distribution pr 29.5 2.8E+02 0.0095 24.0 12.3 60 248-314 12-71 (111)
109 2ap3_A Conserved hypothetical 28.9 1.5E+02 0.005 28.3 7.6 106 255-362 35-140 (199)
110 3oja_A Leucine-rich immune mol 28.8 4.9E+02 0.017 26.7 13.4 37 275-311 436-472 (487)
111 3haj_A Human pacsin2 F-BAR; pa 28.8 5.2E+02 0.018 26.9 18.7 29 292-320 189-217 (486)
112 3qh9_A Liprin-beta-2; coiled-c 28.5 2.5E+02 0.0085 23.2 8.1 51 247-297 27-77 (81)
113 3m91_A Proteasome-associated A 28.1 1.9E+02 0.0066 21.7 7.1 39 268-306 10-48 (51)
114 2p22_A Suppressor protein STP2 27.9 3.7E+02 0.013 25.0 14.9 118 89-210 8-155 (174)
115 3bas_A Myosin heavy chain, str 27.9 2.5E+02 0.0085 22.9 11.4 32 261-292 22-53 (89)
116 4h22_A Leucine-rich repeat fli 27.4 3E+02 0.01 23.7 10.0 55 251-305 28-82 (103)
117 1gk4_A Vimentin; intermediate 27.0 2.5E+02 0.0085 22.7 11.6 21 248-268 3-23 (84)
118 4fla_A Regulation of nuclear P 26.4 3.6E+02 0.012 24.3 11.6 81 92-186 67-147 (152)
119 3oja_A Leucine-rich immune mol 26.3 5.4E+02 0.018 26.3 16.3 17 198-214 321-337 (487)
120 3a7o_A Autophagy protein 16; c 26.0 2.6E+02 0.0088 22.6 7.3 48 240-287 19-66 (75)
121 3gp4_A Transcriptional regulat 25.8 3.3E+02 0.011 23.7 9.8 9 203-211 48-56 (142)
122 3lss_A Seryl-tRNA synthetase; 25.4 2.6E+02 0.009 29.9 9.6 34 100-133 37-70 (484)
123 1ecm_A Endo-oxabicyclic transi 25.0 3E+02 0.01 22.9 9.2 74 269-342 7-82 (109)
124 3d5a_X RF1, peptide chain rele 25.0 4.2E+02 0.014 27.3 10.7 44 176-219 5-50 (354)
125 3jsv_C NF-kappa-B essential mo 24.6 3.2E+02 0.011 23.1 11.2 74 89-162 5-81 (94)
126 3abh_A Pacsin2, protein kinase 24.4 4.8E+02 0.016 25.1 15.0 22 300-321 204-225 (312)
127 1lq7_A Alpha3W; three helix bu 24.4 1.1E+02 0.0038 23.5 4.7 48 236-283 13-64 (67)
128 1gqe_A Release factor 2, RF2; 24.0 6.1E+02 0.021 26.1 12.5 41 308-348 70-110 (365)
129 3q0x_A Centriole protein; cent 24.0 2.5E+02 0.0086 27.2 8.4 36 266-308 184-219 (228)
130 3mtu_A Tropomyosin alpha-1 cha 23.2 2.3E+02 0.0078 22.6 6.7 30 271-300 13-42 (75)
131 1t2k_D Cyclic-AMP-dependent tr 22.4 2.4E+02 0.0084 21.2 6.5 17 268-284 37-53 (61)
132 4gkw_A Spindle assembly abnorm 22.2 4.3E+02 0.015 23.8 13.0 90 237-326 16-105 (167)
133 3jsv_C NF-kappa-B essential mo 21.8 3.7E+02 0.012 22.7 10.6 63 255-321 4-66 (94)
134 2d8d_A Aroag, phospho-2-dehydr 21.5 3.1E+02 0.011 21.9 8.1 37 269-305 5-41 (90)
135 2xnx_M M protein, M1-BC1; cell 21.5 2.5E+02 0.0084 25.6 7.2 45 245-289 65-109 (146)
136 1fxk_A Prefoldin; archaeal pro 21.5 3.3E+02 0.011 22.1 11.5 9 205-213 8-16 (107)
137 2gtv_X CM, chorismate mutase; 21.1 3.8E+02 0.013 22.6 8.1 34 271-304 7-48 (104)
138 4dzn_A Coiled-coil peptide CC- 21.1 1.8E+02 0.006 19.6 4.5 10 249-258 12-21 (33)
139 1ci6_A Transcription factor AT 20.9 2.9E+02 0.0098 21.2 7.0 16 268-283 38-53 (63)
140 3ret_A Salicylate biosynthesis 20.8 3.3E+02 0.011 22.4 7.5 76 270-346 11-88 (101)
141 3a7o_A Autophagy protein 16; c 20.5 3.4E+02 0.012 21.9 7.7 50 248-297 20-69 (75)
142 2jo8_A Serine/threonine-protei 20.2 2.5E+02 0.0085 21.3 5.8 42 173-233 9-50 (51)
143 3u06_A Protein claret segregat 20.2 3E+02 0.01 28.7 8.6 36 254-289 4-39 (412)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.12 E-value=0.0059 Score=56.92 Aligned_cols=70 Identities=13% Similarity=0.161 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHH
Q 009998 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQAL 158 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L 158 (520)
+.|+++|..+..++..+......+...+..+......+...+..+......++..+......+..++..+
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (284)
T 1c1g_A 2 DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKL 71 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888877777777777777777666666666666666666555555555555555444433
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.94 E-value=0.013 Score=54.59 Aligned_cols=46 Identities=15% Similarity=0.116 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009998 91 IRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTE 136 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~q 136 (520)
+...++.+...+..+......+...+.........+...+..+...
T Consensus 18 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (284)
T 1c1g_A 18 ALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEA 63 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333333333333333333333333333333
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.81 E-value=0.0077 Score=59.27 Aligned_cols=171 Identities=12% Similarity=0.151 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHhhhhhhccccCCCCCCHHHHHHHHHHHHHHHh
Q 009998 112 LMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQ 191 (520)
Q Consensus 112 I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~klre~~nArsk~~f~SveEID~rI~~LE~~Iq 191 (520)
|...|..++..+..+-.++..+..+..+++..+.....+++.+...+.++.. .++++..+|...+.++.
T Consensus 16 lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~-----------~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 16 LDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQ-----------TLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
Confidence 4445555566666666666666666666666666666666666666654442 35567777777777777
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 009998 192 HEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKA 271 (520)
Q Consensus 192 hgSLsL~EEKklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~~~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~a 271 (520)
+++ +-.|=.-+-+||..++.....+. +.+..+...++.++..+..+...+..+...+..
T Consensus 85 ~v~-~~kE~~aL~kEie~~~~~i~~lE--------------------~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~ 143 (256)
T 3na7_A 85 EIK-SERELRSLNIEEDIAKERSNQAN--------------------REIENLQNEIKRKSEKQEDLKKEMLELEKLALE 143 (256)
T ss_dssp HCS-SSSHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccC-CHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665 44444555566666665443321 122222222333344444444433333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 009998 272 LDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRAL 317 (520)
Q Consensus 272 l~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~ 317 (520)
... .+...+.++......+...+..|...++.-.-.+|+..+.
T Consensus 144 ~~~---~~~~~~~e~~~e~~~l~~~r~~l~~~i~~~lL~~Yerir~ 186 (256)
T 3na7_A 144 LES---LVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIRR 186 (256)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 322 2223334444555555555566666666555556655544
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.95 E-value=0.0022 Score=75.49 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 91 IRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLK 134 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr 134 (520)
++.++..++..+..+...+..+...+..+..+...+..++....
T Consensus 862 L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~ 905 (1184)
T 1i84_S 862 KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAET 905 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555544444444333
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.92 E-value=0.00014 Score=85.68 Aligned_cols=41 Identities=7% Similarity=-0.006 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 92 RAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRS 132 (520)
Q Consensus 92 kakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLka 132 (520)
...+..+..++..+......+...+........++..++..
T Consensus 912 e~~l~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~ 952 (1184)
T 1i84_S 912 EEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKK 952 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455444444444444444444444444333333
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.90 E-value=0.37 Score=47.21 Aligned_cols=95 Identities=11% Similarity=0.035 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHhhhhhhccccCCCCC
Q 009998 95 IDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICS 174 (520)
Q Consensus 95 I~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~klre~~nArsk~~f~ 174 (520)
+..++.+|..+...+..+-..+..+......+..++..+......+...+...-.++..+...+.+.+...+. ....+
T Consensus 13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~--v~~~k 90 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE--IKSER 90 (256)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CSSSS
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCHH
Confidence 4555666666666666666777777777777777777777777666666666666666666666655433221 11234
Q ss_pred CHHHHHHHHHHHHHHHh
Q 009998 175 SEEELDDLIRSLQYRIQ 191 (520)
Q Consensus 175 SveEID~rI~~LE~~Iq 191 (520)
-...|.++|..+..+++
T Consensus 91 E~~aL~kEie~~~~~i~ 107 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSN 107 (256)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44556666666555443
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.04 E-value=9.7 Score=44.73 Aligned_cols=113 Identities=17% Similarity=0.223 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHhc---CCCCcHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhccch
Q 009998 177 EELDDLIRSLQYRIQH---EIIPLSEE-----KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDL 248 (520)
Q Consensus 177 eEID~rI~~LE~~Iqh---gSLsL~EE-----KklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~~~d~iK~l~~eL 248 (520)
..++.+|..|+++++. ....|.++ ..+..|++.|++....+.. ...+.....++++
T Consensus 924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~----------~~~e~~~~~~~v~------ 987 (1080)
T 2dfs_A 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM----------SEEEAKNATNRVL------ 987 (1080)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHTHHHHHH----------HHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH------
Confidence 4566666666666654 22233333 3456666666665444332 1112222223333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 009998 249 DGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 309 (520)
Q Consensus 249 d~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~ 309 (520)
.+.++++.++..+..+.+..+.+...+..+++ .+.++...+-+....|+.+.++++.
T Consensus 988 -~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 988 -SLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444432 2224444445555555555555553
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.60 E-value=4.3 Score=47.62 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCcHHH
Q 009998 174 SSEEELDDLIRSLQYRIQHEIIPLSEE 200 (520)
Q Consensus 174 ~SveEID~rI~~LE~~IqhgSLsL~EE 200 (520)
.++..+......||..|..=+..|.++
T Consensus 914 r~~~~l~~~~~~LE~kl~eLq~rL~~~ 940 (1080)
T 2dfs_A 914 RSVERYKKLHIGLENKIMQLQRKIDEQ 940 (1080)
T ss_dssp ---------------------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777888888888777777664
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.67 E-value=30 Score=45.28 Aligned_cols=58 Identities=22% Similarity=0.294 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~d 305 (520)
|..++.++..+..+|..+++++.+...+...|+.+.+.+..+.+.|-.=|..|-.++.
T Consensus 2030 L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~ 2087 (3245)
T 3vkg_A 2030 QDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERG 2087 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 4444444455555555555555555555555555555555555555555555555544
No 10
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=88.89 E-value=9.7 Score=32.20 Aligned_cols=62 Identities=8% Similarity=0.167 Sum_probs=29.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 309 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~ 309 (520)
.+.||++++.++-......++...+..++..+......+-.....+-.++..|..++|....
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e 65 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSE 65 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554444444444444444444444444444444444444444444333
No 11
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=88.82 E-value=5.2 Score=33.89 Aligned_cols=78 Identities=19% Similarity=0.335 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 198 SEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIE 277 (520)
Q Consensus 198 ~EEKklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~~~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~ 277 (520)
.+|..++.++..|.+.+..+.. . |..+..+...+...=...-..+.+..-++.
T Consensus 18 ~eE~~L~~eL~~lEke~~~l~~--------------------e-------l~~le~E~~~L~~eE~~~w~eyn~~~~ql~ 70 (96)
T 3q8t_A 18 LEEERLIQELEDVEKNRKVVAE--------------------N-------LEKVQAEAERLDQEEAQYQREYSEFKRQQL 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------------------H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHH--------------------H-------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 5788888888888888765432 1 222233333332221122223445555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 278 ALQQEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 278 ~Lqeel~al~~krdeay~~i~~LRk 302 (520)
.++++++++..+.+-+-..+..|++
T Consensus 71 e~~dE~~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 71 ELDDELKSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6666666666666666666666654
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.73 E-value=33 Score=44.82 Aligned_cols=53 Identities=9% Similarity=0.268 Sum_probs=22.8
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 244 MGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFAN 296 (520)
Q Consensus 244 l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~ 296 (520)
++.++..+.++++..++++.++++++..+.+++..|+++++++..+.+.+-.+
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e 2064 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTE 2064 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444433333
No 13
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=88.40 E-value=3.4 Score=34.31 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 009998 89 PKIRAKIDLTDR-------EIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRK 149 (520)
Q Consensus 89 ~~lkakI~~a~k-------eI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~k 149 (520)
+.+.+||..|-. +|..+++....+..+...++..|..|..+...|++++.++...+..-+.
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666555 6777777777777777777777777777777777777776665554443
No 14
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=85.94 E-value=4.3 Score=34.76 Aligned_cols=60 Identities=20% Similarity=0.321 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 009998 254 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQ 313 (520)
Q Consensus 254 eldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~ 313 (520)
+++.++.+|..+...+..+..++..|+.++..-...|..+-.....+..++.++...+|.
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFe 65 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD 65 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555666778888889999999999999999999999999999998886
No 15
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=85.74 E-value=12 Score=30.41 Aligned_cols=59 Identities=10% Similarity=0.121 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 009998 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 309 (520)
Q Consensus 251 lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~ 309 (520)
|++++..++.......+++..+..++.........+-.....+-.+|+.|-.+++....
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee 62 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSE 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333333333333333333333333344444444443333
No 16
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=85.62 E-value=9.2 Score=31.76 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=51.0
Q ss_pred HHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 009998 240 QVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 309 (520)
Q Consensus 240 ~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~ 309 (520)
.+..+..+|..++..+.......+++..++..+-.+.+.|+.++..+-+.+..+......|-.++.+.+.
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555677778888777778888888888888888888888777777777776666666666665544
No 17
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=85.53 E-value=5.5 Score=35.89 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 009998 249 DGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 309 (520)
Q Consensus 249 d~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~ 309 (520)
-.++.+.+.+...+.++.+.+..++.++.+++.+++.+.....++-.+++.|..+.-++..
T Consensus 71 ~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 71 FKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666666666666666666666666666666666666666666665555433
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.91 E-value=27 Score=37.01 Aligned_cols=31 Identities=16% Similarity=0.064 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 254 ESQAVWAKISHLEGKVKALDEEIEALQQEVN 284 (520)
Q Consensus 254 eldalr~kIkel~~k~~al~~ei~~Lqeel~ 284 (520)
.+..++.....+...+......++.++++++
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (597)
T 3oja_B 510 VFTHLKERQAFKLRETQARRTEADAKQKETE 540 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHhhhhhhcchh
Confidence 3333333333333333333333333333333
No 19
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=83.20 E-value=22 Score=30.89 Aligned_cols=62 Identities=10% Similarity=0.133 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 309 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~ 309 (520)
|+.++...+.++.+...-...-..+..++..|.+.++.++-.|-++-.++..|+.++.=+..
T Consensus 43 ldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 43 RDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443332222233455566666666666666666666666666666654433
No 20
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=82.75 E-value=11 Score=31.31 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ 303 (520)
Q Consensus 251 lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke 303 (520)
++-+++.++.+...+......+......|..+...++..+..--.+|+.|-.+
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444444444444444444444444443
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.74 E-value=14 Score=39.30 Aligned_cols=6 Identities=33% Similarity=0.733 Sum_probs=2.3
Q ss_pred CchHHH
Q 009998 87 DDPKIR 92 (520)
Q Consensus 87 Dd~~lk 92 (520)
+.+-+.
T Consensus 397 ~~~~~~ 402 (597)
T 3oja_B 397 DKPYLD 402 (597)
T ss_dssp SSHHHH
T ss_pred Cccchh
Confidence 334433
No 22
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=82.52 E-value=24 Score=30.72 Aligned_cols=62 Identities=15% Similarity=0.301 Sum_probs=32.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 309 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~ 309 (520)
|..||.+++.+...-..+.-.+..++..++.+..+...-...|..+=+.+..||+..|..+-
T Consensus 22 I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l 83 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASL 83 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHH
Confidence 34445555544444333444444444444444444444455666777777777777766443
No 23
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=82.08 E-value=22 Score=30.07 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 009998 250 GVKKESQAVWAKISHLEGKV 269 (520)
Q Consensus 250 ~lKkeldalr~kIkel~~k~ 269 (520)
.||++++.++.......++.
T Consensus 6 aIKkKm~~lk~e~e~a~dra 25 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRA 25 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333333333
No 24
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=81.70 E-value=23 Score=29.88 Aligned_cols=70 Identities=9% Similarity=0.111 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHH
Q 009998 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQAL 158 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L 158 (520)
+.|+.+|..+..+.......-..+-.+++....++..+-.++.+|.-..+++...++.-...+...+..|
T Consensus 5 d~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kL 74 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788889888888888888877788888888888888888888887777777766666555555555544
No 25
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=79.54 E-value=23 Score=32.49 Aligned_cols=67 Identities=15% Similarity=0.173 Sum_probs=51.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQY 314 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~ 314 (520)
|..|+.++..++.+|..+...+..-.+.+..|++++.+++-+-+.+-.++..|.++-+.+-.-|-.+
T Consensus 70 I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~r 136 (152)
T 3a7p_A 70 LAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKK 136 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777888888888887777777777777888888888887788888888888777776655544
No 26
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.61 E-value=12 Score=40.46 Aligned_cols=13 Identities=15% Similarity=0.399 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHHH
Q 009998 89 PKIRAKIDLTDRE 101 (520)
Q Consensus 89 ~~lkakI~~a~ke 101 (520)
=.|+--|+..+..
T Consensus 49 CrLQglLdkqErD 61 (562)
T 3ghg_A 49 CRMKGLIDEVNQD 61 (562)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cchhhhHHhhcCc
Confidence 3455555555543
No 27
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=77.29 E-value=20 Score=31.64 Aligned_cols=70 Identities=17% Similarity=0.292 Sum_probs=50.4
Q ss_pred hhhhhhHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 232 GKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 307 (520)
Q Consensus 232 ~~ke~~~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~ 307 (520)
+.++.+++.++ .+++.|+.+++.+.. +...-+..+...++.|..+++.-...++.+......||.+....
T Consensus 11 d~rD~~Ie~Lk---reie~lk~ele~l~~---E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 11 DEKDHLIERLY---REISGLKAQLENMKT---ESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp CTHHHHHHHHH---HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHH---HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443 345556666555533 44556678889999999999999999999999999999887754
No 28
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=76.93 E-value=17 Score=32.64 Aligned_cols=14 Identities=29% Similarity=0.294 Sum_probs=5.6
Q ss_pred CHHHHHHHHHHHHH
Q 009998 175 SEEELDDLIRSLQY 188 (520)
Q Consensus 175 SveEID~rI~~LE~ 188 (520)
+.+-|..--..|+.
T Consensus 26 ~ee~L~~vA~~vd~ 39 (138)
T 3hnw_A 26 SEEYLQRVASYINN 39 (138)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 34444433333333
No 29
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=76.51 E-value=19 Score=29.76 Aligned_cols=36 Identities=11% Similarity=0.282 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 270 KALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 270 ~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~d 305 (520)
..+..++..|...++.++-.|-++-.++..|..++.
T Consensus 45 ~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 45 EEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666666666666655543
No 30
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=76.40 E-value=28 Score=28.19 Aligned_cols=50 Identities=22% Similarity=0.334 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 253 KESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 253 keldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRk 302 (520)
...+.+..+++..+........++.+|+..+..+-...+.+-..+...-.
T Consensus 20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~ 69 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333344444444444444444444444433333
No 31
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=76.28 E-value=12 Score=28.59 Aligned_cols=44 Identities=7% Similarity=0.123 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 255 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIK 298 (520)
Q Consensus 255 ldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~ 298 (520)
++.|..++..|..++..|+.+++.|..+..+++++=..+..+|+
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344444444444445555555555555555555444444443
No 32
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.91 E-value=27 Score=32.15 Aligned_cols=55 Identities=22% Similarity=0.342 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 009998 259 WAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQ 313 (520)
Q Consensus 259 r~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~ 313 (520)
+.++..+......+..++..|+.++..-...|-.+-.....+..+++++...+|.
T Consensus 43 r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFe 97 (154)
T 2ocy_A 43 KEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD 97 (154)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445556778888899999999999999999999999999999998886
No 33
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=75.26 E-value=38 Score=36.81 Aligned_cols=44 Identities=14% Similarity=0.239 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 264 HLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 307 (520)
Q Consensus 264 el~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~ 307 (520)
+|+..+..|+.+|+.-...+..|.....+.+.+|+.|-..+|-+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiq 157 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIK 157 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444544444444555555555555555555555555543
No 34
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=73.93 E-value=9.6 Score=39.79 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=48.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 247 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 247 eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRk 302 (520)
+|+.++.++..++.++.++...+..+..++..|.+++..-...|..+++.+.+|+.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 47778888888888888888888899999999999999999999999999999874
No 35
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=72.87 E-value=9.5 Score=40.03 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=48.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 245 GSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 245 ~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRk 302 (520)
+.+-+.|..++..++.++.++..+.+.+..++..+.+++......|..+++.+.+|+.
T Consensus 2 ~~~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 2 GSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3456778888888888888888888888899999999999999999999999998875
No 36
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=70.65 E-value=46 Score=27.84 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 009998 280 QQEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 280 qeel~al~~krdeay~~i~~LRk 302 (520)
..++..+......+...+..|..
T Consensus 70 ~~~l~~l~~~i~~l~~~i~~l~~ 92 (112)
T 1l8d_A 70 HLDLNNSKNTLAKLIDRKSELER 92 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 37
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=69.44 E-value=46 Score=35.80 Aligned_cols=67 Identities=10% Similarity=0.141 Sum_probs=33.7
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 239 DQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALD-----------EEIEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 239 d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~-----------~ei~~Lqeel~al~~krdeay~~i~~LRke~d 305 (520)
+++..+..+.-.+..+++.++++.+.+.+++..+. .+...|..+...+.++...+.+.+.++..+++
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555554332 13445555555555555555555555554443
No 38
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=68.83 E-value=33 Score=28.23 Aligned_cols=67 Identities=18% Similarity=0.269 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 009998 254 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 320 (520)
Q Consensus 254 eldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~k 320 (520)
+.+.+..++.++......+...+..|+..+.+....++.+-.++..|-..+|-+-.++...|.-+.+
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444556667777777788888888888888888888888888888888888887777777766655
No 39
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=68.06 E-value=54 Score=28.58 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 009998 254 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEA 321 (520)
Q Consensus 254 eldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~ka 321 (520)
+++.|..++...++.+.+.+.+++.|..++.. +++..+.|.-|+.|.+---..|..-|.+.-++
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q----~~~~lE~I~vLkaQv~IY~~DF~aERadREkl 88 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQ----HKIVMETVPVLKAQADIYKADFQAERHAREKL 88 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHccchhhHHHH
Confidence 56666666667777777777777777776554 66666889999999998888998888766554
No 40
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=65.97 E-value=60 Score=27.37 Aligned_cols=49 Identities=16% Similarity=0.300 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 256 QAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 304 (520)
Q Consensus 256 dalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~ 304 (520)
+.+..+++.+......+..++.+|+..+..+-...+.+-..+......+
T Consensus 26 e~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kL 74 (101)
T 3u1c_A 26 EQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444444433333
No 41
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=64.60 E-value=73 Score=27.85 Aligned_cols=43 Identities=26% Similarity=0.429 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 264 HLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 264 el~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de 306 (520)
++..++..+...+....+....+...+..+-..+..|+++++.
T Consensus 80 eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 80 QLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445555555555555555555555555554
No 42
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=63.71 E-value=46 Score=30.54 Aligned_cols=10 Identities=20% Similarity=0.308 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 009998 204 LREIKQLEGT 213 (520)
Q Consensus 204 LkEIk~Lkk~ 213 (520)
.+.|..|+.-
T Consensus 67 ~~~I~~L~~E 76 (152)
T 3a7p_A 67 LNTLAILQKE 76 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444333
No 43
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=63.15 E-value=1.4e+02 Score=30.68 Aligned_cols=67 Identities=12% Similarity=0.151 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 009998 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 320 (520)
Q Consensus 251 lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~k 320 (520)
|+++|+.++..+-.++.+-...+-.+-.|++.|+.-..+.. .+|.+|-.++.+.|..+.+.+..+..
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQ---KKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666666666666667766665555522 47777777777777766666555544
No 44
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=61.87 E-value=66 Score=26.46 Aligned_cols=57 Identities=16% Similarity=0.312 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 250 GVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 250 ~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de 306 (520)
+||.+++.+...-..+.-.+..++..+..+..+...=...|..+=+.+..||+..|.
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~ 60 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDN 60 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 334444444333333333333333333333344444444444555555555554444
No 45
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=61.78 E-value=17 Score=29.19 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=12.6
Q ss_pred hHHHHHhhccchhhHHHHHHHHHHHHH
Q 009998 237 IQDQVKLMGSDLDGVKKESQAVWAKIS 263 (520)
Q Consensus 237 ~~d~iK~l~~eLd~lKkeldalr~kIk 263 (520)
+..++.....||+.|..=+-.+|+++-
T Consensus 8 L~~kl~~Kq~EI~rLnvlvgslR~KLi 34 (74)
T 2q6q_A 8 LNFKLREKQNEIFELKKIAETLRSKLE 34 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555555443
No 46
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=61.20 E-value=29 Score=36.74 Aligned_cols=19 Identities=32% Similarity=0.552 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009998 201 KQILREIKQLEGTREKVMA 219 (520)
Q Consensus 201 KklLkEIk~Lkk~Rk~v~a 219 (520)
+.++.++.+|+..|..++.
T Consensus 41 r~~~~~~~~l~~~~n~~sk 59 (455)
T 2dq0_A 41 RTKLKEINRLRHERNKIAV 59 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5677788888888776554
No 47
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=60.56 E-value=85 Score=27.32 Aligned_cols=57 Identities=14% Similarity=0.242 Sum_probs=37.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 009998 88 DPKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKR 148 (520)
Q Consensus 88 d~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~ 148 (520)
-+.|+..+..|++.+.......+.+...+.. +.+-.+++.-|++|..-|+.-+..-+
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q----~~~~lE~I~vLkaQv~IY~~DF~aER 82 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQ----HKIVMETVPVLKAQADIYKADFQAER 82 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHccch
Confidence 3789999999999998888777777666654 44444555555555555554444433
No 48
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=60.36 E-value=1.2e+02 Score=28.78 Aligned_cols=56 Identities=13% Similarity=0.318 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 250 GVKKESQAVWAKISHLEGKVKALDEE----IEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 250 ~lKkeldalr~kIkel~~k~~al~~e----i~~Lqeel~al~~krdeay~~i~~LRke~d 305 (520)
.|+..+..+...+..++.++.....+ ++.|+.++..+...++.+-..|..|--.-|
T Consensus 60 ~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~ND 119 (189)
T 2v71_A 60 DLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAND 119 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444445444444 777777777777777777777776654333
No 49
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=60.29 E-value=33 Score=28.13 Aligned_cols=55 Identities=16% Similarity=0.258 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKA------LDEEIEALQQEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~a------l~~ei~~Lqeel~al~~krdeay~~i~~LRk 302 (520)
|+.|-..|..+-.+|..|...+.. -...+..|..++.++....+.+|.++-.|-.
T Consensus 24 le~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555421 1234666777777777777777777766643
No 50
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=59.95 E-value=34 Score=29.65 Aligned_cols=32 Identities=25% Similarity=0.514 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 269 VKALDEEIEALQQEVNDVAEKRDKAFANIKEL 300 (520)
Q Consensus 269 ~~al~~ei~~Lqeel~al~~krdeay~~i~~L 300 (520)
+.++..+++.|...++.+-.+||=.|.+++.+
T Consensus 20 i~~L~~ei~eLk~~ve~lEkERDFYF~KLRdI 51 (106)
T 4e61_A 20 IGSLNEEIEQYKGTVSTLEIEREFYFNKLRDI 51 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555443
No 51
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=58.79 E-value=54 Score=26.96 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=18.5
Q ss_pred HHHhhhhhhHHHHHHHHhhHHHHHHHHhh
Q 009998 133 LKTEGRQYKSVMDDKRKEMEPLHQALGKL 161 (520)
Q Consensus 133 Lr~qqk~~r~~~~eK~kEik~Lq~~L~kl 161 (520)
++.+.+.+-..++.|+.+|..|++.|.++
T Consensus 46 ~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 46 ARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 33334445666777777777777777654
No 52
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=58.07 E-value=37 Score=25.78 Aligned_cols=44 Identities=16% Similarity=0.248 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRD 291 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krd 291 (520)
++.|-.+++.|..++..|...+.++..++..-++|-.-++..+|
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444444444445544555555555555555555555444
No 53
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=57.33 E-value=41 Score=35.64 Aligned_cols=69 Identities=12% Similarity=0.192 Sum_probs=41.0
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 239 DQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDE---EIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 307 (520)
Q Consensus 239 d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~---ei~~Lqeel~al~~krdeay~~i~~LRke~de~ 307 (520)
+++..++.+.-.+..+++.++++.+.+.+++..+.. +...|..+...+.++...+-+.+..+..+++..
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555666666666666666666654322 355666666666666666666666666666443
No 54
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=55.55 E-value=81 Score=25.47 Aligned_cols=63 Identities=19% Similarity=0.228 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 009998 258 VWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 320 (520)
Q Consensus 258 lr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~k 320 (520)
+..++.++......+...+..|+..+......++.+-.++..|-..+|-+-.++...|.-+.+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345566667777777778888888888888888888888888888888777777766666554
No 55
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=55.44 E-value=74 Score=26.04 Aligned_cols=49 Identities=20% Similarity=0.346 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 009998 100 REIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKR 148 (520)
Q Consensus 100 keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~ 148 (520)
++|..+.....++.+.-.++.--++.||.+++.|..++..++..+.+..
T Consensus 9 kevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~ 57 (77)
T 2w83_C 9 REVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVK 57 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444444444555555556666677888888888777776665544433
No 56
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=54.66 E-value=1.3e+02 Score=27.55 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 009998 271 ALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLN 319 (520)
Q Consensus 271 al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~ 319 (520)
.+...|+.|.+++..-..+...+...+...-.++..+...||..-..+.
T Consensus 102 kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~ 150 (155)
T 2efr_A 102 KLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVA 150 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 3333344444333333333333333333333333333445555444433
No 57
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=53.20 E-value=48 Score=30.90 Aligned_cols=63 Identities=17% Similarity=0.093 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHhh
Q 009998 99 DREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKL 161 (520)
Q Consensus 99 ~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~kl 161 (520)
..+..++++.+.+...+...+|.+......+|.+|.....-=...+....++|..|+..+...
T Consensus 70 ~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~ 132 (175)
T 3lay_A 70 TEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQ 132 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444555555555555556666655443333466677777777777766533
No 58
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=52.61 E-value=1.1e+02 Score=31.92 Aligned_cols=23 Identities=4% Similarity=0.079 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 009998 90 KIRAKIDLTDREIQRRNQARMQL 112 (520)
Q Consensus 90 ~lkakI~~a~keI~kl~q~R~~I 112 (520)
.++..|+.|...+..+.+.-..+
T Consensus 64 ~~~~rIe~L~~~L~~~s~s~~~~ 86 (390)
T 1deq_A 64 DFTSRINKLRDSLFNYQKNSKDS 86 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHH
Confidence 34555555555555544443333
No 59
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=52.39 E-value=1.5e+02 Score=27.59 Aligned_cols=35 Identities=23% Similarity=0.443 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 268 KVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 268 k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRk 302 (520)
++..+..++..+......+......+-+.+..|-+
T Consensus 98 ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEK 132 (168)
T 3o0z_A 98 RITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEK 132 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333334444444433
No 60
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=52.21 E-value=1.2e+02 Score=28.10 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Q 009998 288 EKRDKAFANIKELRKQRDEGNAYF 311 (520)
Q Consensus 288 ~krdeay~~i~~LRke~de~n~~f 311 (520)
++++.+..+|.+||.++......|
T Consensus 113 akI~aL~~Ei~~Lr~qL~~~R~k~ 136 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLDEQRVKR 136 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555444433
No 61
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=52.06 E-value=68 Score=34.50 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 102 IQRRNQARMQLMDELRAKRVIRGDLAAQLRS 132 (520)
Q Consensus 102 I~kl~q~R~~I~akl~~~r~~R~eL~~qLka 132 (520)
|-.+.+.|-.+..+++.++++|+.+..++..
T Consensus 72 ~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~ 102 (501)
T 1wle_A 72 IISTWQELRQLREQIRSLEEEKEAVTEAVRA 102 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555444443
No 62
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=51.60 E-value=75 Score=34.10 Aligned_cols=18 Identities=6% Similarity=0.078 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009998 201 KQILREIKQLEGTREKVM 218 (520)
Q Consensus 201 KklLkEIk~Lkk~Rk~v~ 218 (520)
+.++.++.+|+..|..++
T Consensus 43 r~~~~~~~~l~~~rn~~s 60 (485)
T 3qne_A 43 VKLRFDLDEHNKKLNSVQ 60 (485)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445566666666666544
No 63
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=51.41 E-value=46 Score=35.75 Aligned_cols=30 Identities=13% Similarity=0.181 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 276 IEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 276 i~~Lqeel~al~~krdeay~~i~~LRke~d 305 (520)
...|..+...+.+++..+-..+..|..+++
T Consensus 73 ~~~l~~~~~~l~~~i~~le~~~~~~~~~~~ 102 (485)
T 3qne_A 73 AKDLIAEKEKLSNEKKEIIEKEAEADKNLR 102 (485)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555544443
No 64
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=51.40 E-value=1.1e+02 Score=25.68 Aligned_cols=59 Identities=17% Similarity=0.329 Sum_probs=35.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 246 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 304 (520)
Q Consensus 246 ~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~ 304 (520)
.+|..++.+-..+...|..+...-..+..+|..+..+...+...=...+...+.++-+.
T Consensus 11 ~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql 69 (96)
T 3q8t_A 11 RELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQ 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666666655555555544444433
No 65
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=48.84 E-value=2.7e+02 Score=29.68 Aligned_cols=18 Identities=0% Similarity=0.132 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009998 91 IRAKIDLTDREIQRRNQA 108 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~ 108 (520)
++..|.+|+..+..+.+.
T Consensus 98 V~~~LqeLe~~l~~lsn~ 115 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDT 115 (464)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhh
Confidence 444555555555554433
No 66
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=48.40 E-value=1.1e+02 Score=24.77 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=18.6
Q ss_pred HHhhhhhhHHHHHHHHhhHHHHHHHHhh
Q 009998 134 KTEGRQYKSVMDDKRKEMEPLHQALGKL 161 (520)
Q Consensus 134 r~qqk~~r~~~~eK~kEik~Lq~~L~kl 161 (520)
+.+.+.+-..++.|+.+|..|++.|.++
T Consensus 41 ~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 41 RSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3333445667777888888887777654
No 67
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=48.17 E-value=1.2e+02 Score=25.13 Aligned_cols=57 Identities=25% Similarity=0.340 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHH
Q 009998 94 KIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPL 154 (520)
Q Consensus 94 kI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~L 154 (520)
--+.++.+|+ .+..|.++|...|..-..+..+|+....+++.+...+..+.++|..|
T Consensus 15 LQSALeaEIq----AKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 15 LQEALEEEVL----TRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555553 34457777777777777777777777776666655554444444443
No 68
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=47.05 E-value=37 Score=35.50 Aligned_cols=66 Identities=18% Similarity=0.223 Sum_probs=31.5
Q ss_pred HHHhhccchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 240 QVKLMGSDLDGVKKESQAVWAKISHLEGKVKA-LDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 240 ~iK~l~~eLd~lKkeldalr~kIkel~~k~~a-l~~ei~~Lqeel~al~~krdeay~~i~~LRke~d 305 (520)
++..+..+.-.+..+++.++++.+.+.+++.. -.++...|..+...+.++...+-..+..+..+++
T Consensus 29 ~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 29 ALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444555555555555444431 1133445555555555555555555555555554
No 69
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=44.78 E-value=32 Score=35.98 Aligned_cols=60 Identities=23% Similarity=0.495 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 201 KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIE 277 (520)
Q Consensus 201 KklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ke~~~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~ 277 (520)
+.++.++.+|+..|..++. .+++. +..+.+...++.+...++.+|+++...+.++.+++.
T Consensus 40 r~~~~~~~~l~~~~n~~sk----------~i~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T 2dq3_A 40 REIIKRLEALRSERNKLSK----------EIGKL-------KREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELK 99 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------HTTGG-------GSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHH-------hhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888888876553 23221 112233445555555555555555555544444443
No 70
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=43.06 E-value=85 Score=27.14 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSL 133 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaL 133 (520)
.++.+.+..++.+|..+++....+...+..+..+|.=|.++|+.+
T Consensus 7 ~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdI 51 (106)
T 4e61_A 7 VAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDI 51 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888888888888888888999888888765
No 71
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=42.40 E-value=36 Score=30.64 Aligned_cols=52 Identities=23% Similarity=0.381 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 009998 262 ISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQ 313 (520)
Q Consensus 262 Ikel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~ 313 (520)
++.+...+..+..++..|+.++..-...|..+-.....+..++.++...+|.
T Consensus 34 l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFe 85 (135)
T 2e7s_A 34 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD 85 (135)
T ss_dssp HHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334455667778888888888888888888999999999999888886
No 72
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=42.28 E-value=2.2e+02 Score=27.08 Aligned_cols=78 Identities=15% Similarity=0.233 Sum_probs=48.2
Q ss_pred eccCC-CCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hhhhHHHHHHHHh
Q 009998 81 IRHRQ-YDDPK-IRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEG--------RQYKSVMDDKRKE 150 (520)
Q Consensus 81 VK~~r-pDd~~-lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qq--------k~~r~~~~eK~kE 150 (520)
|...+ +|+.. +..-++-+-..+..+.+.-..+..+...+....+.+.++|+.+...- ..|-..+++|...
T Consensus 111 i~L~~~~d~~e~i~elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~K 190 (213)
T 1ik9_A 111 FNLEKVENPAEVIRELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTK 190 (213)
T ss_dssp EECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44444 55543 34555555555555555555566666666677777777776666544 3466778888888
Q ss_pred hHHHHHHH
Q 009998 151 MEPLHQAL 158 (520)
Q Consensus 151 ik~Lq~~L 158 (520)
|..|++.|
T Consensus 191 IR~lq~~L 198 (213)
T 1ik9_A 191 IRSLHNKL 198 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887544
No 73
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=41.86 E-value=1.2e+02 Score=28.82 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHH
Q 009998 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALG 159 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~ 159 (520)
..++..++.++..|.++...-..+..++..+..+-..|..+|.+++++...+........+.|.-..+.+.
T Consensus 9 ~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e 79 (190)
T 4emc_A 9 NSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYE 79 (190)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHH
Confidence 45678888999999999999888999999999999999999999999988777666555444444444433
No 74
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=41.70 E-value=2.1e+02 Score=26.18 Aligned_cols=31 Identities=10% Similarity=0.253 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 275 EIEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 275 ei~~Lqeel~al~~krdeay~~i~~LRke~d 305 (520)
.+..|+..++.+-+.....-.+...+...+|
T Consensus 99 sv~kLEk~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 99 SVTKLEKSIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333333333333333
No 75
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=41.05 E-value=1.9e+02 Score=25.50 Aligned_cols=18 Identities=11% Similarity=0.136 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 009998 89 PKIRAKIDLTDREIQRRN 106 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~ 106 (520)
..+...|+.++.-+....
T Consensus 34 ~EVq~sl~~l~~l~~~w~ 51 (130)
T 4dnd_A 34 GEVQKAVNTARGLYQRWC 51 (130)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666666665544
No 76
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=40.51 E-value=58 Score=26.30 Aligned_cols=61 Identities=21% Similarity=0.317 Sum_probs=41.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 246 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 246 ~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de 306 (520)
.+|++|++++..++.+-.+..-.+-.+-++++.=..++-.+-++-=.+|..+.++|++...
T Consensus 3 edi~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~ 63 (71)
T 2js5_A 3 EGAEELKAKLKKLNAQATALKMDLHDLAEDLPTGWNRIMEVAEKTYEAYRQLDEFRKSTAS 63 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788888888777666666666776666655666666666666777777777666543
No 77
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=40.44 E-value=35 Score=25.82 Aligned_cols=28 Identities=14% Similarity=0.168 Sum_probs=14.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 247 DLDGVKKESQAVWAKISHLEGKVKALDE 274 (520)
Q Consensus 247 eLd~lKkeldalr~kIkel~~k~~al~~ 274 (520)
+++.|+.+.+.++.++..|......+..
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555544444444433
No 78
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=40.41 E-value=1.3e+02 Score=25.30 Aligned_cols=11 Identities=27% Similarity=0.474 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 009998 206 EIKQLEGTREK 216 (520)
Q Consensus 206 EIk~Lkk~Rk~ 216 (520)
||..|+..|..
T Consensus 22 ev~~lKq~RRt 32 (90)
T 2wt7_B 22 EVIRLKQKRRT 32 (90)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 34444444443
No 79
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=40.24 E-value=2.3e+02 Score=30.35 Aligned_cols=97 Identities=10% Similarity=0.073 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHH-HHHHHhhhhhhc
Q 009998 88 DPKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPL-HQALGKLRTTNN 166 (520)
Q Consensus 88 d~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~L-q~~L~klre~~n 166 (520)
+-.++..|+.|...+..+.+.-..+..-+..+.+.-+.-..+.+..-.-..+|-..++.++.-|+.- ...+..|+-+++
T Consensus 60 erdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~ 139 (491)
T 1m1j_A 60 DQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQN 139 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHhc
Q 009998 167 ARSGGICSSEEELDDLIRSLQYRIQH 192 (520)
Q Consensus 167 Arsk~~f~SveEID~rI~~LE~~Iqh 192 (520)
.++++...|.+||--|..
T Consensus 140 --------~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 140 --------SIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp --------HHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHH
No 80
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=39.51 E-value=1.3e+02 Score=31.51 Aligned_cols=71 Identities=8% Similarity=0.096 Sum_probs=41.5
Q ss_pred HHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHH
Q 009998 240 QVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAF-----ANIKELRKQRDEGNAYFFQ 313 (520)
Q Consensus 240 ~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay-----~~i~~LRke~de~n~~f~~ 313 (520)
+...+-..|+.+-..++.++. .+..++...-.+++.|-.++..|+.++..+- ..=+.|+++||.+-.++-+
T Consensus 72 ~a~~La~~~n~~~~~L~~~~~---~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~~~~~~g~~~ndLlDqRD~ll~eLS~ 147 (463)
T 2d4y_A 72 KAEGLVNQFKTTDQYLRDQDK---QVNIAIGSSVAQINNYAKQIANLNDQISRMTGVGAGASPNDLLDQRDQLVSELNK 147 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHhHHHHHHHHHHHHh
Confidence 333443445555555555554 3445555666677777777777777776542 3345788888876654433
No 81
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=39.10 E-value=1.8e+02 Score=24.73 Aligned_cols=65 Identities=25% Similarity=0.366 Sum_probs=37.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhH
Q 009998 245 GSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR-DEGNA 309 (520)
Q Consensus 245 ~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~-de~n~ 309 (520)
+.+++.+|.+++.+..++..+...+..+...+..-+..+..+-..+..+-..+..|...+ ++.|.
T Consensus 4 ~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~ 69 (97)
T 2eqb_B 4 GSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANN 69 (97)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666666555555566666666666665555543 34443
No 82
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=38.48 E-value=1.2e+02 Score=32.56 Aligned_cols=22 Identities=14% Similarity=0.299 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 009998 283 VNDVAEKRDKAFANIKELRKQR 304 (520)
Q Consensus 283 l~al~~krdeay~~i~~LRke~ 304 (520)
...+.+++..+-..+..|..++
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~ 134 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEER 134 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444
No 83
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=38.06 E-value=2.6e+02 Score=26.25 Aligned_cols=15 Identities=20% Similarity=0.056 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 009998 330 VQGLKELSNSEVEKY 344 (520)
Q Consensus 330 v~el~~~~~~eve~f 344 (520)
+.+.++-|..=++.|
T Consensus 137 ~~e~eeeS~~l~~~F 151 (192)
T 2p22_C 137 TKKLDEESSQLETTT 151 (192)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555444444
No 84
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=37.96 E-value=1.7e+02 Score=24.19 Aligned_cols=11 Identities=9% Similarity=0.368 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 009998 203 ILREIKQLEGT 213 (520)
Q Consensus 203 lLkEIk~Lkk~ 213 (520)
++.+.+.|+..
T Consensus 11 ~i~~~~~l~~~ 21 (117)
T 2zqm_A 11 MLGQLESYQQQ 21 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 85
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=37.34 E-value=1.7e+02 Score=23.87 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=5.5
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEG 267 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~ 267 (520)
|+.++.....+...|.+++.
T Consensus 5 ie~L~~q~~~Le~~l~e~E~ 24 (86)
T 1x8y_A 5 LSQLQCQLAAKEAKLRDLED 24 (86)
T ss_dssp -------CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 86
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=37.03 E-value=2.9e+02 Score=26.50 Aligned_cols=122 Identities=15% Similarity=0.247 Sum_probs=63.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhhhh-hHHHHHhhccc
Q 009998 172 ICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGT---REKVMANAAMRAKIQESMGKKED-IQDQVKLMGSD 247 (520)
Q Consensus 172 ~f~SveEID~rI~~LE~~IqhgSLsL~EEKklLkEIk~Lkk~---Rk~v~a~~~~~akiq~s~~~ke~-~~d~iK~l~~e 247 (520)
...++.+|+..-..|+.-.... |+.+..||.+|+++ ...|..-+... .+-+...+. +++....+..
T Consensus 91 eg~~~~di~~~W~~Le~ae~eR------e~aL~~el~RlerLe~La~kf~rka~~~---e~~L~~~~~~L~~d~~~l~~- 160 (235)
T 2odv_A 91 PGYHPLDVEKEWGKLHVAILER------EKQLRSEFERLEALQRIVTKLQMEAGLA---EEQLNQADALLQSDVRLLAA- 160 (235)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTT-
T ss_pred CCCCHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhcch-
Confidence 3567999999999999887655 44555555555444 33333212211 111212211 2112222221
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQ----EVNDVAEKRDKAFANIKELRKQR 304 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqe----el~al~~krdeay~~i~~LRke~ 304 (520)
...+++ .+++...|..+.+.+..+....+.|.. +.+.++.....+...+..|+...
T Consensus 161 ~~a~k~-~e~ie~dL~~~e~~i~~l~~~a~~L~~~~y~~a~~i~~r~~~l~~~w~~L~~~~ 220 (235)
T 2odv_A 161 GKVPQR-AGEVERDLDKADSMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHKRLVAIRTEY 220 (235)
T ss_dssp TCCCSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333 666666666666666666666555532 34555555666666666665544
No 87
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=36.97 E-value=76 Score=33.15 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 009998 270 KALDEEIEALQQEVNDVAEKRDK 292 (520)
Q Consensus 270 ~al~~ei~~Lqeel~al~~krde 292 (520)
..+.+++..|.+++.++.++.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 74 KALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 88
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=36.83 E-value=39 Score=35.36 Aligned_cols=66 Identities=15% Similarity=0.284 Sum_probs=30.9
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 239 DQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALD---EEIEALQQEVNDVAEKRDKAFANIKELRKQR 304 (520)
Q Consensus 239 d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~---~ei~~Lqeel~al~~krdeay~~i~~LRke~ 304 (520)
+++..++.+.-.+..+++.++++.+.+++++..+. ++...|..+...+.++...+-..+..+..++
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEEL 98 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555555555555543321 1233344444444444444444444444444
No 89
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=36.31 E-value=3.6e+02 Score=27.83 Aligned_cols=46 Identities=7% Similarity=0.109 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHHHHHHHHHH
Q 009998 173 CSSEEELDDLIRSLQYRIQHEII--PLSEEKQILREIKQLEGTREKVM 218 (520)
Q Consensus 173 f~SveEID~rI~~LE~~IqhgSL--sL~EEKklLkEIk~Lkk~Rk~v~ 218 (520)
+...+.+..++..|+..+...++ .-..=.++++|.+.|+..-..+.
T Consensus 24 ~~~l~~~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~ 71 (365)
T 1gqe_A 24 YLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLD 71 (365)
T ss_dssp HTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999988765 33444677888888877755433
No 90
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=35.78 E-value=38 Score=24.75 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=11.3
Q ss_pred HHHhhccchhhHHHHHHHHHHHHHHH
Q 009998 240 QVKLMGSDLDGVKKESQAVWAKISHL 265 (520)
Q Consensus 240 ~iK~l~~eLd~lKkeldalr~kIkel 265 (520)
++..++.+|+..+++|..++.++++|
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444443
No 91
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=35.28 E-value=2.1e+02 Score=24.42 Aligned_cols=76 Identities=8% Similarity=0.127 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHH
Q 009998 268 KVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKK--DVQGLKELSNSEVEK 343 (520)
Q Consensus 268 k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~karela~~~--~v~el~~~~~~eve~ 343 (520)
.+..+..+|+.|..++-.+..+|-.+-..+..++.....---.--.-...+..+..++..+ +-..++.+...-++-
T Consensus 13 ~L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K~~~~~~i~dp~RE~~vl~~~~~~a~~~~l~~~~i~~if~~Ii~~ 90 (114)
T 3rmi_A 13 ELAYLRQSIDNFDITLIHILAERFRCTQAIGRLKARYNLPAVDPLREQYQIKRLRKLAIDTHFDPDFAEKFLKFIIKE 90 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 3555666666677777777777777777777777654321112233344555666665443 345555555544443
No 92
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=35.07 E-value=79 Score=26.13 Aligned_cols=60 Identities=18% Similarity=0.298 Sum_probs=42.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 247 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 247 eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de 306 (520)
+|++|++++..++.+-.+..-.+-.+-+++..=..++-.+-++-=.+|..+..+|+++..
T Consensus 16 di~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~ 75 (81)
T 3csx_A 16 AVADLKKKVRKLNSKAGQMKMDLHDLAEGLPTDYENLVETAEKTYEIFRELDQLKKKLNI 75 (81)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888777777776777777776666666777777777777777777776654
No 93
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=34.73 E-value=4.6e+02 Score=28.21 Aligned_cols=35 Identities=17% Similarity=0.368 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhCChHhHHHHHHHhHHHHhhhhhccCCCCCCCCCCccccccC
Q 009998 337 SNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEKPLVVAET 390 (520)
Q Consensus 337 ~~~eve~fm~~wn~~~~FR~dY~k~~~~s~~~R~~~~DGR~~~pde~p~~~~~~ 390 (520)
...+|.++|+.|.+++ +.||++--|--++|||-+.
T Consensus 95 ~~~~~~k~lae~ek~k-------------------~eDGyLs~~~aQ~Lvf~sE 129 (497)
T 3iox_A 95 EQTSIKAALAELEKHK-------------------NEDGNLTEPSAQNLVYDLE 129 (497)
T ss_dssp HHHHHHHHHHHHTTTT-------------------TSTTSBSSCCCBCEECSCC
T ss_pred HHHHHHHHHHHHhhcc-------------------ccCCCccchhcccceecCC
Confidence 4556778888887765 6799999999999998764
No 94
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=33.20 E-value=1.3e+02 Score=24.93 Aligned_cols=30 Identities=17% Similarity=0.396 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 252 KKESQAVWAKISHLEGKVKALDEEIEALQQ 281 (520)
Q Consensus 252 Kkeldalr~kIkel~~k~~al~~ei~~Lqe 281 (520)
|...-....++.+...+...+..++..|.+
T Consensus 37 r~~ni~~eskL~eae~rn~eL~~e~~~l~~ 66 (81)
T 1wt6_A 37 RTDNQNFASQLREAEARNRDLEAHVRQLQE 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 95
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=32.76 E-value=3e+02 Score=25.49 Aligned_cols=17 Identities=12% Similarity=0.335 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009998 92 RAKIDLTDREIQRRNQA 108 (520)
Q Consensus 92 kakI~~a~keI~kl~q~ 108 (520)
-.+|..+++++..++..
T Consensus 5 neKi~~LekQL~E~n~k 21 (168)
T 3o0z_A 5 NEKLSQLQKQLEEANDL 21 (168)
T ss_dssp -----CTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34555566666555544
No 96
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=32.33 E-value=1.6e+02 Score=23.98 Aligned_cols=59 Identities=15% Similarity=0.276 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 009998 251 VKKESQAVWAKISHLEGKVKALDEEIEA--LQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFF 312 (520)
Q Consensus 251 lKkeldalr~kIkel~~k~~al~~ei~~--Lqeel~al~~krdeay~~i~~LRke~de~n~~f~ 312 (520)
.+++++.|-..|..+..++..+...+.. +.. .=..+...+...+..|..+++..+..|.
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~ladp~~y~---~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVADASFFS---QPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGG---SCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc---CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666655555555444444443321 100 1134566677777777777777777664
No 97
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=32.14 E-value=1.5e+02 Score=27.19 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKAL 272 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al 272 (520)
++..+..++++..+++.+..++..+
T Consensus 71 ~~sA~~~~d~lekKl~~aq~kL~~L 95 (158)
T 3tul_A 71 TDTAKSVYDAATKKLTQAQNKLQSL 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455566666666655555555444
No 98
>4fye_A SIDF, inhibitor of growth family, member 3; mixed alpha-beta, phosphatase, phosphoinositides, membrane,; 2.41A {Legionella pneumophila subsp} PDB: 4fyf_A 4fyg_A*
Probab=31.41 E-value=4.4e+02 Score=27.50 Aligned_cols=78 Identities=22% Similarity=0.323 Sum_probs=48.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHhHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD-------------EGNAYFFQY 314 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~d-------------e~n~~f~~~ 314 (520)
||.|+.+.|.....|+.-+.-+..+-..|+.|..-.- .+-.......+++|+.++. -....||+.
T Consensus 525 ldqlknqvdgyeksikkqesaiyelhnqidalrkayy--tehkgqinkalqelkeqispviqnketdpetksrlqhfyns 602 (761)
T 4fye_A 525 LDQLKNQVDGYEKSIKKQESAIYELHNQIDALRKAYY--TEHKGQINKALQELKEQISPVIQNKETDPETKSRLQHFYNS 602 (761)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHhcChhhcCCCCChhHHHHHHHHHHH
Confidence 6777777777776666655555566666665543221 1122233344555666553 224489999
Q ss_pred HHHHHHHHHHHhc
Q 009998 315 RALLNEAKAMSVK 327 (520)
Q Consensus 315 r~~~~karela~~ 327 (520)
..-+..+.+|-+.
T Consensus 603 cayltqaqelyye 615 (761)
T 4fye_A 603 CAYLTQAQELYYE 615 (761)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998664
No 99
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=31.15 E-value=1.4e+02 Score=22.40 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVN 284 (520)
Q Consensus 251 lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~ 284 (520)
++.+++.+.++-..|.+-+.....+|..|.++++
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433333333333444444444444433
No 100
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=31.13 E-value=2.2e+02 Score=23.31 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAE 288 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~ 288 (520)
++.-+.+++.++.--.+|..--..|+.-++.|+.+.+.+..
T Consensus 20 ~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ 60 (78)
T 3iv1_A 20 MDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 33334444444443333433333343334444444433333
No 101
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=30.58 E-value=1.1e+02 Score=28.54 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 009998 276 IEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 320 (520)
Q Consensus 276 i~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~k 320 (520)
+..||.+++.+.++ +..++.+|..+++.++.-+|+.|..+-+
T Consensus 5 L~~iQ~e~~~l~~~---~~~e~~~le~ky~~~~~p~y~kR~~iI~ 46 (193)
T 3kyp_A 5 FEDIQKDIEQLDIK---CAHEQMNIQKQYDEKKKPLFEKRDEIIQ 46 (193)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhchHHHHHHHHhc
Confidence 35555555555553 4456667777777888888887776655
No 102
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=30.43 E-value=3.4e+02 Score=25.39 Aligned_cols=22 Identities=14% Similarity=0.463 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhCChHhHHHHHHHh
Q 009998 338 NSEVEKYMTLWNNNKAFRDDYEKRL 362 (520)
Q Consensus 338 ~~eve~fm~~wn~~~~FR~dY~k~~ 362 (520)
..+|+.|+... ++.|..|+-|-
T Consensus 157 e~dv~~Fl~~y---~~~R~~yH~Rr 178 (192)
T 2p22_C 157 ADDLDQFIKNY---LDIRTQYHLRR 178 (192)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHH
T ss_pred cchHHHHHHHH---HHHHHHHHHHH
Confidence 45788888665 67888888654
No 103
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=30.18 E-value=1.8e+02 Score=27.50 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 009998 269 VKALDEEIEALQQEVNDVAEKR 290 (520)
Q Consensus 269 ~~al~~ei~~Lqeel~al~~kr 290 (520)
+...+.++..|+.++.++....
T Consensus 36 l~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 36 LDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444444444444444433
No 104
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=30.14 E-value=1.3e+02 Score=31.15 Aligned_cols=37 Identities=27% Similarity=0.346 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 254 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKR 290 (520)
Q Consensus 254 eldalr~kIkel~~k~~al~~ei~~Lqeel~al~~kr 290 (520)
+++++..+|..+..+...+...+..++.++..+.++-
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 40 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEIL 40 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666566555555555555554443
No 105
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=30.02 E-value=1.3e+02 Score=30.56 Aligned_cols=41 Identities=12% Similarity=0.095 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 260 AKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKEL 300 (520)
Q Consensus 260 ~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~L 300 (520)
.+|..++..+......|..|+..+..+..+++.+-..|..|
T Consensus 12 ~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 12 EEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555555555555555544444444444
No 106
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=29.74 E-value=91 Score=23.51 Aligned_cols=16 Identities=13% Similarity=0.167 Sum_probs=5.8
Q ss_pred hhHHHHHHHHHHHHHH
Q 009998 249 DGVKKESQAVWAKISH 264 (520)
Q Consensus 249 d~lKkeldalr~kIke 264 (520)
++|+.+++.+...+.+
T Consensus 29 ~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 29 AEMKEKYEAIVEENKK 44 (53)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 107
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=29.63 E-value=2.2e+02 Score=24.01 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 89 PKIRAKIDLTDREIQRRNQARMQLMDELR 117 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~akl~ 117 (520)
..|..+|+.++++|.+..+.|..|..-++
T Consensus 18 kkL~~Ki~el~~ei~ke~~~regl~Km~~ 46 (98)
T 2ke4_A 18 KRLQQQLEERSRELQKEVDQREALKKMKD 46 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999988754433
No 108
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=29.46 E-value=2.8e+02 Score=24.04 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQY 314 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~ 314 (520)
.+.|.-+++.++.++.... ......++.|+.++..+...++.+-..|+.|-- .|+.|-..
T Consensus 12 ~~~L~~E~e~~k~K~~~~~---~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq----~NDDLER~ 71 (111)
T 2v66_B 12 NQRLKYEVEALKEKLEHQY---AQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ----ANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hchHHHHH
Confidence 3444555555544433222 233445788999999999999998888887754 45555443
No 109
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1
Probab=28.88 E-value=1.5e+02 Score=28.27 Aligned_cols=106 Identities=14% Similarity=0.146 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCHHHHH
Q 009998 255 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLK 334 (520)
Q Consensus 255 ldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~karela~~~~v~el~ 334 (520)
+.....+|..|+.+-..|.++|. .+....+...-+.+..++..-.+.++.-...+-........+...+..-+-..++
T Consensus 35 ~~~~qkkL~~LEkk~q~LY~qI~--~~~~~~v~~~adqa~~nv~eRek~l~kEk~si~~s~kef~~~k~~i~kIeD~~~K 112 (199)
T 2ap3_A 35 IKTVGKKIAELDEKKKKLTEDVN--SKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKKSEQDFKKAKSHVDNIDNDVKR 112 (199)
T ss_dssp HHHHHHHHHHHHHHHHTTTTGGG--CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----CCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 33344455556656656666655 6667777777777777777766666666667777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHhCChHhHHHHHHHh
Q 009998 335 ELSNSEVEKYMTLWNNNKAFRDDYEKRL 362 (520)
Q Consensus 335 ~~~~~eve~fm~~wn~~~~FR~dY~k~~ 362 (520)
..+..=++-|....-.-..|=+.|.+.+
T Consensus 113 kqa~~l~~~~k~RY~~~~~l~~~Y~k~l 140 (199)
T 2ap3_A 113 KEVKQLDDVLKEKYKLHSDYAKAYKKAV 140 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777888888743
No 110
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=28.83 E-value=4.9e+02 Score=26.66 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 009998 275 EIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYF 311 (520)
Q Consensus 275 ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f 311 (520)
+.+..+.+.+.+.++.+.+...+.++-.+..+.+..|
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
T 3oja_A 436 DWDMYQHKETQLAEENARLKKLNGEADLALASANATL 472 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHH
Confidence 3344455555555555555555555555555555433
No 111
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=28.79 E-value=5.2e+02 Score=26.94 Aligned_cols=29 Identities=10% Similarity=0.071 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 009998 292 KAFANIKELRKQRDEGNAYFFQYRALLNE 320 (520)
Q Consensus 292 eay~~i~~LRke~de~n~~f~~~r~~~~k 320 (520)
++..+......+..+..+.|..+...++.
T Consensus 189 K~~~k~~k~~~~~~~a~~~Y~~~v~~~n~ 217 (486)
T 3haj_A 189 KLQDKIEKCKQDVLKTKEKYEKSLKELDQ 217 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444433
No 112
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=28.50 E-value=2.5e+02 Score=23.16 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 247 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANI 297 (520)
Q Consensus 247 eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i 297 (520)
+|+.||-.+..+-+.-..-+.++++-++++..|+.++..=......+-..+
T Consensus 27 Ei~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 27 ELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
No 113
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=28.09 E-value=1.9e+02 Score=21.72 Aligned_cols=39 Identities=21% Similarity=0.356 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 268 KVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 268 k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de 306 (520)
.+..++..+..|......+.+--.++..+|..|+.+++.
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555556566666666666666666666666654
No 114
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=27.93 E-value=3.7e+02 Score=24.96 Aligned_cols=118 Identities=12% Similarity=0.171 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHH--------HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHH
Q 009998 89 PKIRAKIDLTDREIQRRNQARM-QLMDEL--------RAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALG 159 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~-~I~akl--------~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~ 159 (520)
+.+..-|+.|+.-|.++-..-. .+.+.+ .+++..+..|......|.....++..........++.|+..+.
T Consensus 8 ~~~~~~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~ 87 (174)
T 2p22_A 8 TNHHEMLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRA 87 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777766654422 233333 2346666777666666766666666666666667777776555
Q ss_pred hhhhhhccccCCCCCCHHH---------------------HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q 009998 160 KLRTTNNARSGGICSSEEE---------------------LDDLIRSLQYRIQHEIIPLSEEKQILREIKQL 210 (520)
Q Consensus 160 klre~~nArsk~~f~SveE---------------------ID~rI~~LE~~IqhgSLsL~EEKklLkEIk~L 210 (520)
++.+.-+.-+ ..-.++++ |+.-|+.|..-+.+|.+++.. +|+.+..|
T Consensus 88 k~~e~~~~~~-~~~~diD~~v~~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~I~ld~---ylK~vR~L 155 (174)
T 2p22_A 88 KVQQFSSTSH-VDDEDVNSIAVAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGTIPLDT---FVKQGREL 155 (174)
T ss_dssp HHHHHTTSSC-CCSSCGGGTEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHH---HHHHHHHH
T ss_pred HHHHHHhcCC-CCCCChhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH---HHHHHHHH
Confidence 4443211101 11124444 888999999999999999975 55555444
No 115
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=27.92 E-value=2.5e+02 Score=22.95 Aligned_cols=32 Identities=6% Similarity=0.250 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 261 KISHLEGKVKALDEEIEALQQEVNDVAEKRDK 292 (520)
Q Consensus 261 kIkel~~k~~al~~ei~~Lqeel~al~~krde 292 (520)
.+..+.+.+......+..|......+...++.
T Consensus 22 el~~lke~l~k~e~~rkele~~~~~l~~ek~~ 53 (89)
T 3bas_A 22 QMDKMKEDLAKTERIKKELEEQNVTLLEQKND 53 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 116
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=27.39 E-value=3e+02 Score=23.67 Aligned_cols=55 Identities=9% Similarity=0.078 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 251 lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~d 305 (520)
+--++|-++.++.++.+.+..++.++.....++...+-..+.+...+..|+.++.
T Consensus 28 l~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 28 FMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555555555555555443
No 117
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=27.01 E-value=2.5e+02 Score=22.65 Aligned_cols=21 Identities=14% Similarity=0.351 Sum_probs=9.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGK 268 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k 268 (520)
|+.++.....+...|.+++..
T Consensus 3 l~~l~~~~~sLE~~l~e~e~~ 23 (84)
T 1gk4_A 3 VDALKGTNESLERQMREMEEN 23 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 118
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=26.38 E-value=3.6e+02 Score=24.33 Aligned_cols=81 Identities=19% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHhhhhhhccccCC
Q 009998 92 RAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGG 171 (520)
Q Consensus 92 kakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~klre~~nArsk~ 171 (520)
+..-..+.++|+..-..-...+..+..--..|..|+.-|......++..........++.+.-...+..++.
T Consensus 67 k~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkk-------- 138 (152)
T 4fla_A 67 KEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRK-------- 138 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q ss_pred CCCCHHHHHHHHHHH
Q 009998 172 ICSSEEELDDLIRSL 186 (520)
Q Consensus 172 ~f~SveEID~rI~~L 186 (520)
+|+..|..|
T Consensus 139 ------eL~~hi~sL 147 (152)
T 4fla_A 139 ------ELKSHIQSL 147 (152)
T ss_dssp ------HHHHHHHTC
T ss_pred ------HHHHHhhcC
No 119
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.28 E-value=5.4e+02 Score=26.33 Aligned_cols=17 Identities=12% Similarity=0.028 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009998 198 SEEKQILREIKQLEGTR 214 (520)
Q Consensus 198 ~EEKklLkEIk~Lkk~R 214 (520)
..++....|+..|-+.|
T Consensus 321 ~g~~eF~~Eve~L~~i~ 337 (487)
T 3oja_A 321 QGSETERLECERENQAR 337 (487)
T ss_dssp ----CHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhccc
Confidence 33555555555555443
No 120
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=26.01 E-value=2.6e+02 Score=22.59 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=21.2
Q ss_pred HHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 240 QVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVA 287 (520)
Q Consensus 240 ~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~ 287 (520)
.++.++.+|.+--.+|..++..++--.+-+..++++|-+|.-+.+-+.
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~ 66 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQ 66 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHH
Confidence 344443334443444444444444333444455555555544444443
No 121
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=25.80 E-value=3.3e+02 Score=23.74 Aligned_cols=9 Identities=11% Similarity=0.110 Sum_probs=4.6
Q ss_pred HHHHHHHHH
Q 009998 203 ILREIKQLE 211 (520)
Q Consensus 203 lLkEIk~Lk 211 (520)
.|.-|..|+
T Consensus 48 ~l~~I~~lr 56 (142)
T 3gp4_A 48 WILFTRQMR 56 (142)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555554
No 122
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=25.41 E-value=2.6e+02 Score=29.87 Aligned_cols=34 Identities=6% Similarity=-0.077 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 100 REIQRRNQARMQLMDELRAKRVIRGDLAAQLRSL 133 (520)
Q Consensus 100 keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaL 133 (520)
.+|-.+.+.|-.+..+++.++++|+.+..++..+
T Consensus 37 d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~ 70 (484)
T 3lss_A 37 DAIIEADKKWRRTQFLTEASKKLINICSKAVGAK 70 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666666666655444
No 123
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=25.02 E-value=3e+02 Score=22.87 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHH
Q 009998 269 VKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKK--DVQGLKELSNSEVE 342 (520)
Q Consensus 269 ~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~karela~~~--~v~el~~~~~~eve 342 (520)
+..+..+|+.|..++-.+-.+|-.+-..+..++.....---.--.-...+..+..++..+ +-..++.+...-++
T Consensus 7 L~~lR~~ID~iD~~L~~LL~~R~~~~~~v~~~K~~~~~~i~dp~RE~~vl~~~~~~a~~~~l~~~~i~~if~~ii~ 82 (109)
T 1ecm_A 7 LLALREKISALDEKLLALLAERRELAVEVGKAKLLSHRPVRDIDRERDLLERLITLGKAHHLDAHYITRLFQLIIE 82 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhHhCCCCHHHHHHHHHHHHH
Confidence 345555666666777777777777777777777654311111223334455555554432 44455554444333
No 124
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=25.01 E-value=4.2e+02 Score=27.30 Aligned_cols=44 Identities=9% Similarity=0.114 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHHHHHHHHHHH
Q 009998 176 EEELDDLIRSLQYRIQHEIIP--LSEEKQILREIKQLEGTREKVMA 219 (520)
Q Consensus 176 veEID~rI~~LE~~IqhgSLs--L~EEKklLkEIk~Lkk~Rk~v~a 219 (520)
.+.+..++..|+..+...++- -..=.++++|.+.|+..-..+..
T Consensus 5 l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~ 50 (354)
T 3d5a_X 5 LDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIRE 50 (354)
T ss_dssp HHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355777888888888776652 33346788888888877555443
No 125
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=24.55 E-value=3.2e+02 Score=23.09 Aligned_cols=74 Identities=15% Similarity=0.188 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHhhh
Q 009998 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKR---VIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLR 162 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~akl~~~r---~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~klr 162 (520)
+.++..+..+..-+......-+.+.+.+...+ ..-.-|..|+...+.....-|+.+..--.+...|+..+..+.
T Consensus 5 ~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq 81 (94)
T 3jsv_C 5 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 46778888888877776665555555544333 222333334443334444444444444445555555555444
No 126
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=24.38 E-value=4.8e+02 Score=25.05 Aligned_cols=22 Identities=5% Similarity=0.006 Sum_probs=9.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q 009998 300 LRKQRDEGNAYFFQYRALLNEA 321 (520)
Q Consensus 300 LRke~de~n~~f~~~r~~~~ka 321 (520)
+..+.....+.|......++..
T Consensus 204 ~~~~~~~a~~~Y~~~v~~~n~~ 225 (312)
T 3abh_A 204 CKQDVLKTKEKYEKSLKELDQG 225 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333344444444444444
No 127
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=24.37 E-value=1.1e+02 Score=23.49 Aligned_cols=48 Identities=31% Similarity=0.614 Sum_probs=30.2
Q ss_pred hhHHHHHhhc--cchhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 009998 236 DIQDQVKLMG--SDLDGVKKESQAVWAKISHLE--GKVKALDEEIEALQQEV 283 (520)
Q Consensus 236 ~~~d~iK~l~--~eLd~lKkeldalr~kIkel~--~k~~al~~ei~~Lqeel 283 (520)
++.+.+++++ ..|.+|+++-..++.+|.++- -.++.+..++..|.+++
T Consensus 13 aleekvkalggggrieelkkkweelkkkieelggggevkkveeevkkleeei 64 (67)
T 1lq7_A 13 ALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEI 64 (67)
T ss_dssp HHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 3555777775 458889999988888877662 22334444555554443
No 128
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=24.00 E-value=6.1e+02 Score=26.15 Aligned_cols=41 Identities=10% Similarity=-0.066 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Q 009998 308 NAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLW 348 (520)
Q Consensus 308 n~~f~~~r~~~~karela~~~~v~el~~~~~~eve~fm~~w 348 (520)
+..|.....++..+.+++...+-.++.+++..|+..+-...
T Consensus 70 ~~~~~~~~~d~~~~~el~~~e~D~e~~~~a~~e~~~l~~~l 110 (365)
T 1gqe_A 70 LDQMKQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKL 110 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 33455555666666777654434467777777766655443
No 129
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=23.95 E-value=2.5e+02 Score=27.18 Aligned_cols=36 Identities=11% Similarity=0.268 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009998 266 EGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN 308 (520)
Q Consensus 266 ~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n 308 (520)
..++...+.++++++..+..+. ..+-+||.++|...
T Consensus 184 ~~~L~~~~~e~~s~~~~~~~~~-------~~~~~~~~~~~~~~ 219 (228)
T 3q0x_A 184 SDDLSRTRDDRDSMVAQLAQCR-------QQLAQLREQYDKHL 219 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhh
Confidence 3334444444444444444433 33445666666543
No 130
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=23.20 E-value=2.3e+02 Score=22.65 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 271 ALDEEIEALQQEVNDVAEKRDKAFANIKEL 300 (520)
Q Consensus 271 al~~ei~~Lqeel~al~~krdeay~~i~~L 300 (520)
+++.+.+.+.+....+-.+||=.|.+++.+
T Consensus 13 aLk~Ekdna~e~~e~lE~ERdFYf~KLRdi 42 (75)
T 3mtu_A 13 MLKLDKENALDRAEQAEADKDFYFGKLRNI 42 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344444444555555555555555544443
No 131
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=22.36 E-value=2.4e+02 Score=21.21 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009998 268 KVKALDEEIEALQQEVN 284 (520)
Q Consensus 268 k~~al~~ei~~Lqeel~ 284 (520)
....+..++..|..++.
T Consensus 37 ~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 37 LNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 132
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=22.17 E-value=4.3e+02 Score=23.75 Aligned_cols=90 Identities=14% Similarity=0.165 Sum_probs=0.0
Q ss_pred hHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 009998 237 IQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRA 316 (520)
Q Consensus 237 ~~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~ 316 (520)
+++-++.+..++++.+.+++-+-.-+.+-..++..+++.-..-|+++-.+.+.-..+-.++..--..+..-...--+..-
T Consensus 16 L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSl 95 (167)
T 4gkw_A 16 LKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSL 95 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhh
Q ss_pred HHHHHHHHHh
Q 009998 317 LLNEAKAMSV 326 (520)
Q Consensus 317 ~~~karela~ 326 (520)
++++.+++.+
T Consensus 96 DiRKLrELEA 105 (167)
T 4gkw_A 96 DMRKLGELEA 105 (167)
T ss_dssp HHHHTHHHHH
T ss_pred hHHHHHHHHh
No 133
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=21.78 E-value=3.7e+02 Score=22.74 Aligned_cols=63 Identities=21% Similarity=0.225 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 009998 255 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEA 321 (520)
Q Consensus 255 ldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~ka 321 (520)
++.+..++....+-+.+-+..|+.|.++. .+.....+.+.-|+.|.+---.+|+.-|.+.-++
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~----~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl 66 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEA----EQHKIVMETVPVLKAQADIYKADFQAERHAREKL 66 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666555533 2333445777888888887777888877766554
No 134
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=21.54 E-value=3.1e+02 Score=21.90 Aligned_cols=37 Identities=19% Similarity=0.413 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 269 VKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 269 ~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~d 305 (520)
+..+..+|+.+..++-.+..+|-.+-..+..++....
T Consensus 5 L~~lR~~ID~iD~~l~~Ll~~R~~~~~~i~~~K~~~~ 41 (90)
T 2d8d_A 5 IQALRKEVDRVNREILRLLSERGRLVQEIGRLQTELG 41 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3455556666677777777777777777777776553
No 135
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=21.54 E-value=2.5e+02 Score=25.58 Aligned_cols=45 Identities=18% Similarity=0.278 Sum_probs=26.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 245 GSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEK 289 (520)
Q Consensus 245 ~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~k 289 (520)
...+.+++-.+++.++.++.+...+.++..++..|..++..+...
T Consensus 65 e~~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEe 109 (146)
T 2xnx_M 65 EKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEE 109 (146)
T ss_dssp TTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345666677777777766666666666555555555555444433
No 136
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=21.51 E-value=3.3e+02 Score=22.09 Aligned_cols=9 Identities=22% Similarity=0.409 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 009998 205 REIKQLEGT 213 (520)
Q Consensus 205 kEIk~Lkk~ 213 (520)
.+.++|+..
T Consensus 8 ~~f~~lq~~ 16 (107)
T 1fxk_A 8 AQFQQLQQQ 16 (107)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444444
No 137
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=21.12 E-value=3.8e+02 Score=22.64 Aligned_cols=34 Identities=12% Similarity=0.378 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 009998 271 ALDEEIEALQQEVN--------DVAEKRDKAFANIKELRKQR 304 (520)
Q Consensus 271 al~~ei~~Lqeel~--------al~~krdeay~~i~~LRke~ 304 (520)
.+..+|+.+..++- .+..+|-.+-..+..++.+.
T Consensus 7 ~lR~~ID~ID~~il~~~~~~~~~Ll~eR~~l~~~Va~~K~~~ 48 (104)
T 2gtv_X 7 EIRKKIDEIDNKILKARWPWAEKLIAERNSLAKDVAEIKNQL 48 (104)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHC
Confidence 34444444455555 55555666666666666544
No 138
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=21.09 E-value=1.8e+02 Score=19.65 Aligned_cols=10 Identities=40% Similarity=0.474 Sum_probs=3.7
Q ss_pred hhHHHHHHHH
Q 009998 249 DGVKKESQAV 258 (520)
Q Consensus 249 d~lKkeldal 258 (520)
..|++++.++
T Consensus 12 aalkkeiaal 21 (33)
T 4dzn_A 12 AALKKEIAAL 21 (33)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 139
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=20.90 E-value=2.9e+02 Score=21.19 Aligned_cols=16 Identities=38% Similarity=0.586 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 009998 268 KVKALDEEIEALQQEV 283 (520)
Q Consensus 268 k~~al~~ei~~Lqeel 283 (520)
....+..++..|..++
T Consensus 38 ~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 38 KNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 140
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=20.80 E-value=3.3e+02 Score=22.41 Aligned_cols=76 Identities=12% Similarity=0.143 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHH
Q 009998 270 KALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKK--DVQGLKELSNSEVEKYMT 346 (520)
Q Consensus 270 ~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~r~~~~karela~~~--~v~el~~~~~~eve~fm~ 346 (520)
..+..+|+.|..++-.+..+|-.+-..+..++.. ..---.--.-...+..+..++..+ +-..++.+...-++-+..
T Consensus 11 ~~lR~~ID~iD~~il~LL~~R~~~~~~i~~~K~~-~~~i~dp~RE~~vl~~~~~~a~~~~l~~~~i~~if~~ii~~s~~ 88 (101)
T 3ret_A 11 ADIREAIDRIDLDIVQALGRRMDYVKAASRFEAS-EAAIPAPERVAAMLPERARWAEENGLDAPFVEGLFAQIIHWYIA 88 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCSS-GGGTTCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Confidence 3445555666666666777777777777766654 211111222334455666665543 445566665555544443
No 141
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=20.51 E-value=3.4e+02 Score=21.89 Aligned_cols=50 Identities=16% Similarity=0.155 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANI 297 (520)
Q Consensus 248 Ld~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i 297 (520)
|..|++++..--.+|..|++.+.--+.....|.+++-.++=+=+-+-.++
T Consensus 20 l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl 69 (75)
T 3a7o_A 20 LAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKL 69 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHH
Confidence 33344444443334444444443333344444444444444433333333
No 142
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=20.17 E-value=2.5e+02 Score=21.26 Aligned_cols=42 Identities=17% Similarity=0.285 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009998 173 CSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGK 233 (520)
Q Consensus 173 f~SveEID~rI~~LE~~IqhgSLsL~EEKklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~ 233 (520)
+.|.+||..+++.|+..|. +||..|++. |.+.+..|-++|++
T Consensus 9 ~ls~eEL~~rl~~Ld~~Me-------------~Ei~elr~R------Y~~KRqPIldAi~a 50 (51)
T 2jo8_A 9 SWTVEDLQKRLLALDPMME-------------QEIEEIRQK------YQSKRQPILDAIEA 50 (51)
T ss_dssp GSCHHHHHHHHHHHHHHHH-------------HHHHHHHHH------HHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHccHHHH-------------HHHHHHHHH------HHHhHhhHHHHHhc
Confidence 5699999999999998876 567777655 33456666665553
No 143
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.16 E-value=3e+02 Score=28.65 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009998 254 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEK 289 (520)
Q Consensus 254 eldalr~kIkel~~k~~al~~ei~~Lqeel~al~~k 289 (520)
+.+.|...+.++.++...+..++..++.++..+.++
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~ 39 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQ 39 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555443
Done!