BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009999
(520 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A7SBF0|INT9_NEMVE Integrator complex subunit 9 homolog OS=Nematostella vectensis
GN=ints9 PE=3 SV=1
Length = 660
Score = 198 bits (503), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 141/492 (28%), Positives = 242/492 (49%), Gaps = 58/492 (11%)
Query: 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLP---NDFYKAICKENS 57
MK C+ G PC +L +++ DC LD+S + F+PL N+ + + ++
Sbjct: 1 MKLYCV---GHSVSSPCLVLQFKQTNIMLDCGLDMSTVNQFTPLSLVNNEKFSQL--KSW 55
Query: 58 DSQNRQKVEKPLDANDL--------IFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGL 109
S+ Q++E N+L I AEP L + S +DV+LIS+ ML L
Sbjct: 56 SSRELQEIEGFTAQNNLKEAGGRLFIDAEPEV-CPPETGLIDFSMVDVILISNYHHMLAL 114
Query: 110 PFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELL 169
PF+T GF+ KIY TE +IG+ +M EL+ + +G W + L
Sbjct: 115 PFITEYSGFNGKIYATEPTIQIGRDLMLELVTFAERV-----PKRRNGNMWKNDNVIRCL 169
Query: 170 PSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIG 229
P+ L ++A + L VK CISK+Q + + E+ GIL + A SSG +G
Sbjct: 170 PAPLNELANVKSWRVLYSK----HDVKACISKIQAVSYSEKLDLCGILQLSAHSSGFCLG 225
Query: 230 ACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFS 289
+ NW++ I+Y+S S+ + H + + ++ SD+++ + ++
Sbjct: 226 SSNWMLESEYEKISYLSPSSSFTTHPLPLNQTVLKNSDVLIITGVTEA------------ 273
Query: 290 DDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQI 349
+ N D + E C+ +++AGG+VL+P GV L E +
Sbjct: 274 -----------PIDNPDAMLGEF------CTHLASTLRAGGNVLVPCYPSGVLYDLFECL 316
Query: 350 AIFMECSSLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKK 408
+++ + L +PIY IS VA+ LAY+N EWLC+ +Q K++ +P F H +L+KE +
Sbjct: 317 YTYLDNAKLGMVPIYFISPVADSSLAYSNIYGEWLCQSKQTKVYLPEPPFPHAELLKEAR 376
Query: 409 IHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRW-SGDHNSLLVLENEVDAEL 467
+ VF +H+ +++ PC+VF+ H SLR G +H + W +N+++ E +
Sbjct: 377 LKVFSNLHN-GFSSSFKTPCVVFTGHPSLRYGDAVHFMEIWGKSGNNTVIFTEPDFPYLE 435
Query: 468 AVLPFKPISMKA 479
A+ P++P++MK
Sbjct: 436 ALAPYQPLAMKT 447
>sp|Q6DFF4|INT9_XENLA Integrator complex subunit 9 OS=Xenopus laevis GN=ints9 PE=2 SV=1
Length = 658
Score = 196 bits (499), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 133/487 (27%), Positives = 235/487 (48%), Gaps = 54/487 (11%)
Query: 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICK----EN 56
MK CL G PC+IL ++ DC LD+++ F PLP + K
Sbjct: 1 MKLYCL---SGHPTLPCNILKFKSSTIMLDCGLDMTSTLSFLPLPLVHSTRLSKLPGWVT 57
Query: 57 SDSQNR-QKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRM 115
D N+ +K K + + P + + L ++S +DV+LIS+ M+ LP++T
Sbjct: 58 KDGNNQFEKELKECSGRVFVDSVPEF-CLPETELIDLSTVDVILISNYHCMMALPYITER 116
Query: 116 EGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRK 175
GF+ +Y TE +IG+L+MEEL+ N R + S W + LLP+ L+
Sbjct: 117 TGFTGTVYATEPTVQIGRLLMEELV--NFIERV---PKAQSATVWKHKDVQRLLPAPLK- 170
Query: 176 IALGEDGSELGG--GCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNW 233
D E+ C + V +SK+Q + + ++ G++ + SSG +G+ NW
Sbjct: 171 -----DAVEVFTWKKCYSMQEVNAALSKIQLVGYSQKIELFGVVQVTPLSSGYALGSSNW 225
Query: 234 IISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNN 293
+I ++Y+SGS+ + H D +++ SD+++ + L+ + +
Sbjct: 226 VIQSHYEKVSYVSGSSLLTTHPQPMDQTSLKNSDVLILTGLTQIPT-------------- 271
Query: 294 NWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFM 353
+N D V E CS ++++GG+VL+P GV LLE + ++
Sbjct: 272 ---------ANPDGMVGEF------CSNLAMTIRSGGNVLVPCYPSGVIYDLLECLYQYI 316
Query: 354 ECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVF 412
+ + L +P Y IS VA L ++ EWLC +Q K++ +P F H +LI+ K+ +
Sbjct: 317 DSAGLSNVPFYFISPVANSSLEFSQIFAEWLCHNKQNKVYLPEPPFPHAELIQSNKLKHY 376
Query: 413 PAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDH-NSLLVLENEVDAELAVLP 471
P +H ++++PC+VF+ H +LR G +H + W N+++ E + A+ P
Sbjct: 377 PNIHG-DFSNDFKQPCVVFTGHPTLRFGDVVHFMELWGKSSLNTVIFTEPDFSYLDALAP 435
Query: 472 FKPISMK 478
++P++MK
Sbjct: 436 YQPLAMK 442
>sp|Q5ZKK2|INT9_CHICK Integrator complex subunit 9 OS=Gallus gallus GN=INTS9 PE=2 SV=1
Length = 658
Score = 196 bits (498), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 136/512 (26%), Positives = 245/512 (47%), Gaps = 58/512 (11%)
Query: 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLP-------NDFYKAIC 53
MK CL G PC++L ++ DC LD+++ F PLP + +
Sbjct: 1 MKLYCL---SGHPTLPCNVLKFKSTTIMLDCGLDMTSTLNFLPLPLVQSPRLSKLPGLVL 57
Query: 54 KENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLT 113
K+ S +++ E + + + P + + L ++S +DV+LIS+ M+ LP++T
Sbjct: 58 KDGSTFLDKELKE--CSGHVFVDSVPEF-CLPETELLDLSTVDVILISNYHCMMALPYIT 114
Query: 114 RMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSAL 173
GF+ +Y TE +IG+L+MEEL+ N R + S W E LLP+ L
Sbjct: 115 EYTGFTGTVYATEPTVQIGRLLMEELV--NSIERV---PKAQSASTWKNKEVQRLLPAPL 169
Query: 174 RKIALGEDGSELG--GGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGAC 231
+ D E+ C + V +SK+Q + + ++ G + + SSG +G+
Sbjct: 170 K------DAVEVSMWRKCYTMPEVNAALSKIQLVGYSQKIELFGAVQVTPLSSGYALGSS 223
Query: 232 NWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDD 291
NWII ++Y+SGS+ + H D +++ SD+++ + L+ + +
Sbjct: 224 NWIIQSHYEKVSYVSGSSLLTTHPQPMDQASLKNSDVLILTGLTQIPT------------ 271
Query: 292 NNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAI 351
+N D V E CS +V+ GG+VL+P GV LLE +
Sbjct: 272 -----------ANPDGMVGEF------CSNLAMTVRNGGNVLVPCYPSGVIYDLLECLYQ 314
Query: 352 FMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIH 410
+++ + L +P Y IS VA L ++ EWLC +Q K++ +P F H +LI+ K+
Sbjct: 315 YIDSAGLSNVPFYFISPVANSSLEFSQIFAEWLCHNKQTKVYLPEPPFPHAELIQTNKLK 374
Query: 411 VFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDH-NSLLVLENEVDAELAV 469
+P++H ++++PC++F+ H SLR G +H + W N+++ E + A+
Sbjct: 375 HYPSIHG-DFSNDFKQPCVIFTGHPSLRFGDVVHFMELWGKSSLNTVIFTEPDFSYLDAL 433
Query: 470 LPFKPISMKASESSTLTKDTATEVSSVSRGME 501
P++P++MK T+ +VS + + ++
Sbjct: 434 APYQPLAMKCVYCPIDTRLNFIQVSKLLKEVQ 465
>sp|Q4R5Z4|INT9_MACFA Integrator complex subunit 9 OS=Macaca fascicularis GN=INTS9 PE=2
SV=1
Length = 637
Score = 195 bits (495), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 134/482 (27%), Positives = 231/482 (47%), Gaps = 65/482 (13%)
Query: 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQ 60
MK CL G PC++L ++ DC LD+++ F PLP ++ +
Sbjct: 1 MKLYCL---SGHPTLPCNVLKFKSTTIMLDCGLDMTSTLNFLPLP--LVQSPRLSSLPGW 55
Query: 61 NRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFSA 120
+ + LD +LI ++S +DV+LIS+ M+ LP++T GF+
Sbjct: 56 SLKDGNAFLDKTELI---------------DLSTVDVILISNYHCMMALPYITEHTGFTG 100
Query: 121 KIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGE 180
+Y TE +IG+L+MEEL+ N R + S W + LLPS L+
Sbjct: 101 TVYATEPTVQIGRLLMEELV--NFIERV---PKAQSASLWKNKDIQRLLPSPLK------ 149
Query: 181 DGSELGG--GCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGA 238
D E+ C + V +SK+Q + F ++ G + + SSG +G+ NWII
Sbjct: 150 DAVEVSTWRRCYTMQEVNSALSKIQLVGFSQKIELFGAVQVTPLSSGYALGSSNWIIQSH 209
Query: 239 KGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEEL 298
++Y+SGS+ + H D +++ SD+++ + L+ + +
Sbjct: 210 YEKVSYVSGSSLLTTHPQPMDQASLKNSDVLVLTGLTQIPT------------------- 250
Query: 299 MNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSL 358
+N D V E CS +V+ GG+VL+P GV LLE + +++ + L
Sbjct: 251 ----ANPDGMVGEF------CSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQYIDSAGL 300
Query: 359 K-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHS 417
+P+Y IS VA L ++ EWLC +Q K++ +P F H +LI+ K+ +P++H
Sbjct: 301 SSVPLYFISPVANSSLEFSQIFAEWLCHNKQSKVYLPEPPFPHAELIQTNKLKHYPSIHG 360
Query: 418 PKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDH-NSLLVLENEVDAELAVLPFKPIS 476
++++PC+VF+ H SLR G +H + W N+++ E + A+ P++P++
Sbjct: 361 -DFSNDFRQPCVVFTGHPSLRFGDVVHFMELWGKSSLNTVIFTEPDFSYLEALAPYQPLA 419
Query: 477 MK 478
MK
Sbjct: 420 MK 421
>sp|Q2KJA6|INT9_BOVIN Integrator complex subunit 9 OS=Bos taurus GN=INTS9 PE=2 SV=1
Length = 658
Score = 193 bits (490), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 134/489 (27%), Positives = 236/489 (48%), Gaps = 58/489 (11%)
Query: 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLP-------NDFYKAIC 53
MK CL G PC++L ++ DC LD+++ F PLP ++
Sbjct: 1 MKLYCL---SGHPTLPCNVLKFKSTTIMLDCGLDMTSTLNFLPLPLVQSPRLSNLPGWSL 57
Query: 54 KENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLT 113
K+ + +++ E + + + P + + L ++S +DV+LIS+ M+ LP++T
Sbjct: 58 KDGNAFLDKELKE--CSGHVFVDSVPEF-CLPETELIDLSTVDVILISNYHCMMALPYIT 114
Query: 114 RMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSAL 173
GF+ +Y TE +IG+L+MEEL+ N R + S W + LLPS L
Sbjct: 115 EHTGFTGTVYATEPTVQIGRLLMEELV--NFIERV---PKAQSASLWKNKDIQRLLPSPL 169
Query: 174 RKIALGEDGSELGG--GCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGAC 231
+ D E+ C + V +SK+Q + + ++ G + + SSG +G+
Sbjct: 170 K------DAVEVSTWRRCYTMQEVNSALSKIQLVGYSQKIELFGAVQVTPLSSGYALGSS 223
Query: 232 NWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDD 291
NWII ++Y+SGS+ + H D +++ SD+++ + L+ + +
Sbjct: 224 NWIIQSHYEKVSYVSGSSLLTTHPQPMDQASLKNSDVLILTGLTQIPT------------ 271
Query: 292 NNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAI 351
+N D V E CS +V+ GG+VL+P GV LLE +
Sbjct: 272 -----------ANPDSMVGEF------CSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQ 314
Query: 352 FMECSSLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIH 410
+++ + L IP Y IS VA L ++ EWLC +Q K++ +P F H +LI+ K+
Sbjct: 315 YIDSAGLSSIPFYFISPVANSSLEFSQIFAEWLCHNKQTKVYLPEPPFPHAELIQTNKLK 374
Query: 411 VFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDH-NSLLVLENEVDAELAV 469
+P++H ++++PC+VF+ H SLR G +H + W N+++ E + A+
Sbjct: 375 HYPSIHG-DFSNDFRQPCVVFTGHPSLRFGDVVHFMELWGKSSLNTVIFTEPDFSYLEAL 433
Query: 470 LPFKPISMK 478
P++P++MK
Sbjct: 434 APYQPLAMK 442
>sp|Q9NV88|INT9_HUMAN Integrator complex subunit 9 OS=Homo sapiens GN=INTS9 PE=1 SV=2
Length = 658
Score = 192 bits (487), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 133/489 (27%), Positives = 237/489 (48%), Gaps = 58/489 (11%)
Query: 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLP-------NDFYKAIC 53
MK CL G PC++L ++ DC LD+++ F PLP ++
Sbjct: 1 MKLYCL---SGHPTLPCNVLKFKSTTIMLDCGLDMTSTLNFLPLPLVQSPRLSNLPGWSL 57
Query: 54 KENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLT 113
K+ + +++ E + + + P + + L ++S +DV+LIS+ M+ LP++T
Sbjct: 58 KDGNAFLDKELKE--CSGHVFVDSVPEF-CLPETELIDLSTVDVILISNYHCMMALPYIT 114
Query: 114 RMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSAL 173
GF+ +Y TE +IG+L+MEEL+ N R + S W + LLPS L
Sbjct: 115 EHTGFTGTVYATEPTVQIGRLLMEELV--NFIERV---PKAQSASLWKNKDIQRLLPSPL 169
Query: 174 RKIALGEDGSELGG--GCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGAC 231
+ D E+ C + V +SK+Q + + ++ G + + SSG +G+
Sbjct: 170 K------DAVEVSTWRRCYTMQEVNSALSKIQLVGYSQKIELFGAVQVTPLSSGYALGSS 223
Query: 232 NWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDD 291
NWII ++Y+SGS+ + H D +++ SD+++ + L+ + +
Sbjct: 224 NWIIQSHYEKVSYVSGSSLLTTHPQPMDQASLKNSDVLVLTGLTQIPT------------ 271
Query: 292 NNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAI 351
+N D V E CS +V+ GG+VL+P GV LLE +
Sbjct: 272 -----------ANPDGMVGEF------CSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQ 314
Query: 352 FMECSSLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIH 410
+++ + L +P+Y IS VA L ++ EWLC +Q K++ +P F H +LI+ K+
Sbjct: 315 YIDSAGLSSVPLYFISPVANSSLEFSQIFAEWLCHNKQSKVYLPEPPFPHAELIQTNKLK 374
Query: 411 VFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDH-NSLLVLENEVDAELAV 469
+P++H ++++PC+VF+ H SLR G +H + W N+++ E + A+
Sbjct: 375 HYPSIHG-DFSNDFRQPCVVFTGHPSLRFGDVVHFMELWGKSSLNTVIFTEPDFSYLEAL 433
Query: 470 LPFKPISMK 478
P++P++MK
Sbjct: 434 APYQPLAMK 442
>sp|Q8K114|INT9_MOUSE Integrator complex subunit 9 OS=Mus musculus GN=Ints9 PE=2 SV=1
Length = 658
Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 132/489 (26%), Positives = 235/489 (48%), Gaps = 58/489 (11%)
Query: 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLP-------NDFYKAIC 53
MK CL G PC++L ++ DC LD+++ F PLP ++
Sbjct: 1 MKLYCL---SGHPTLPCNVLKFKSTTIMLDCGLDMTSTLNFLPLPLVQSPRLSNLPGWSL 57
Query: 54 KENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLT 113
K+ + +++ E + + + P + + L ++S +DV+LIS+ M+ LP++T
Sbjct: 58 KDGNAFLDKELKE--CSGHVFVDSVPEF-CLPETELIDLSTVDVILISNYHCMMALPYIT 114
Query: 114 RMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSAL 173
GF+ +Y TE +IG+L+MEEL+ N R + S W + LLPS L
Sbjct: 115 EHTGFTGTVYATEPTMQIGRLLMEELV--NFIERV---PKAQSASLWKNKDIQRLLPSPL 169
Query: 174 RKIALGEDGSELGG--GCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGAC 231
+ D E+ C + V +SK+Q + + ++ G + + SSG +G+
Sbjct: 170 K------DAVEVSTWRRCYTMQEVNSALSKIQLVGYSQKIELFGAVQVTPLSSGYALGSS 223
Query: 232 NWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDD 291
NWII ++Y+SGS+ + H D +++ SD+++ + L+ + +
Sbjct: 224 NWIIQSHYEKVSYVSGSSLLTTHPQPMDQASLKNSDVLILTGLTQIPT------------ 271
Query: 292 NNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAI 351
+N D V E CS +V+ GG+VL+P GV LLE +
Sbjct: 272 -----------ANPDGMVGEF------CSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQ 314
Query: 352 FMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIH 410
+++ + L IP Y IS VA L ++ EWLC +Q K++ +P F H +LI+ K+
Sbjct: 315 YIDSAGLSNIPFYFISPVANSSLEFSQIFAEWLCHNKQSKVYLPEPPFPHAELIQTNKLK 374
Query: 411 VFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDH-NSLLVLENEVDAELAV 469
+ ++H ++++PC++F+ H SLR G +H + W N+++ E + A+
Sbjct: 375 HYRSIHG-DFSNDFRQPCVLFTGHPSLRFGDVVHFMELWGKSSLNTIIFTEPDFSYLEAL 433
Query: 470 LPFKPISMK 478
P++P++MK
Sbjct: 434 APYQPLAMK 442
>sp|Q54SH0|INT9_DICDI Integrator complex subunit 9 homolog OS=Dictyostelium discoideum
GN=ints9 PE=3 SV=1
Length = 712
Score = 159 bits (401), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 133/515 (25%), Positives = 233/515 (45%), Gaps = 88/515 (17%)
Query: 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDF------------ 48
MK CL Q PC +L +L DC L++S++ F P ++
Sbjct: 1 MKVHCLSQSAQ---SPCFLLEYKNVKILLDCALEISSILHFLPKNLNYNNNNNNNNNNNN 57
Query: 49 --------------YKAICKENSDSQNRQKVEKPL----DANDLIFAEPWYKTVNNLHLW 90
Y K+ +Q + + L +++ + P ++ +++
Sbjct: 58 NNNNNNNNNNNNNSYSFKEKDKELNQFFKNINGTLYIDNGCSNIKYNCPQFEMIDDF--- 114
Query: 91 NVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFY 150
S ID++LIS+ + LPF+T F KIY TE +IG+L++EEL+ M+ +Y
Sbjct: 115 --STIDMILISNYTNIYALPFITEYTNFQGKIYATEPTVQIGKLLLEELVQMDKQYSNSS 172
Query: 151 GAEESSGPQWMK-WEELELLPS------ALRKIALGEDGSELGGGCPCIAHVKDCISKVQ 203
++ W+ +E+L + L D I ++ K+Q
Sbjct: 173 INNNNNNNNLSDCWQNIEILEKLNVHNVGMENENLYRDSYRWKDLYKKID-IEKSFEKIQ 231
Query: 204 TLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKG--NIAYISGSNFA-SGHAMDFDY 260
++RF E + G I + SSG +G+ NW+I +KG + YIS S+ + S + F
Sbjct: 232 SIRFNESIKHYGFECIPS-SSGYGLGSANWVIE-SKGFERVVYISDSSLSLSRYPTPFQL 289
Query: 261 RAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICS 320
I D+++ S ++ NN +++++ L CS
Sbjct: 290 SPIDNPDVLILSKINHY-------------PNNPPDQMLSEL----------------CS 320
Query: 321 CAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLK-IPIYIISSVAEELLAYTNTI 379
+++ GG+VLIP G+ L L E +A ++ L +PIY +SSV++ +L+Y +
Sbjct: 321 NIGSTLQQGGTVLIPSYSCGIILDLFEHLADYLNKVGLPYVPIYFVSSVSKAVLSYADIY 380
Query: 380 PEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQ--EPCIVFSPHWSL 437
EWL K +QE+ F + F H L+++ + + VHS N+Q +PCI+F+ H S
Sbjct: 381 SEWLNKSKQERAFMPETPFLHQDLMRKGQFQAYQHVHS-----NFQANDPCIIFTGHPSC 435
Query: 438 RLGPTIHLLRRWSGDHNSLLVLENEVDAELAVLPF 472
R+G L++ + NS+L++E + D + VLPF
Sbjct: 436 RIGDITTLIKLYDNPKNSILLIEPDFDFKSTVLPF 470
>sp|Q9CWS4|INT11_MOUSE Integrator complex subunit 11 OS=Mus musculus GN=Cpsf3l PE=2 SV=1
Length = 600
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/368 (20%), Positives = 136/368 (36%), Gaps = 79/368 (21%)
Query: 94 FIDVVLISS-PMGMLG-LPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYG 151
F+D V+IS + G LP+ + M G+ IY+T I +++E+
Sbjct: 60 FLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDY------------ 107
Query: 152 AEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEA 211
RKIA+ + G +KDC+ KV + +
Sbjct: 108 ----------------------RKIAVDKKGE---ANFFTSQMIKDCMKKVVAVHLHQTV 142
Query: 212 CYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILY 271
+ L IKA+ +G +GA + I ++ Y N + + +L++
Sbjct: 143 QVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLI- 201
Query: 272 SDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGS 331
TE ++ D E + L E+VE GG
Sbjct: 202 --------TESTYATTIRDSKRCRER--DFLKKVHETVER-----------------GGK 234
Query: 332 VLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKL 391
VLIP+ +G +L + F E +LK+PIY + + E+ Y W Q+ K
Sbjct: 235 VLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITW-TNQKIRKT 293
Query: 392 FSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSG 451
F +F K I F + + P +VF+ L G ++ + R+W+G
Sbjct: 294 FVQRNMFEF------KHIKAF-----DRTFADNPGPMVVFATPGMLHAGQSLQIFRKWAG 342
Query: 452 DHNSLLVL 459
+ +++++
Sbjct: 343 NEKNMVIM 350
>sp|Q3MHC2|INT11_RAT Integrator complex subunit 11 OS=Rattus norvegicus GN=Cpsf3l PE=2
SV=1
Length = 600
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/368 (20%), Positives = 136/368 (36%), Gaps = 79/368 (21%)
Query: 94 FIDVVLISS-PMGMLG-LPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYG 151
F+D V+IS + G LP+ + M G+ IY+T I +++E+
Sbjct: 60 FLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDY------------ 107
Query: 152 AEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEA 211
RKIA+ + G +KDC+ KV + +
Sbjct: 108 ----------------------RKIAVDKKGE---ANFFTSQMIKDCMKKVVAVHLHQTV 142
Query: 212 CYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILY 271
+ L IKA+ +G +GA + I ++ Y N + + +L++
Sbjct: 143 QVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLI- 201
Query: 272 SDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGS 331
TE ++ D E + L E+VE GG
Sbjct: 202 --------TESTYATTIRDSKRCRER--DFLKKVHETVER-----------------GGK 234
Query: 332 VLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKL 391
VLIP+ +G +L + F E +LK+PIY + + E+ Y W Q+ K
Sbjct: 235 VLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITW-TNQKIRKT 293
Query: 392 FSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSG 451
F +F K I F + + P +VF+ L G ++ + R+W+G
Sbjct: 294 FVQRNMFEF------KHIKAF-----DRTFADNPGPMVVFATPGMLHAGQSLQIFRKWAG 342
Query: 452 DHNSLLVL 459
+ +++++
Sbjct: 343 NEKNMVIM 350
>sp|Q5TA45|INT11_HUMAN Integrator complex subunit 11 OS=Homo sapiens GN=CPSF3L PE=1 SV=2
Length = 600
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/368 (20%), Positives = 136/368 (36%), Gaps = 79/368 (21%)
Query: 94 FIDVVLISS-PMGMLG-LPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYG 151
F+D V+IS + G LP+ + M G+ IY+T I +++E+
Sbjct: 60 FLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDY------------ 107
Query: 152 AEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEA 211
RKIA+ + G +KDC+ KV + +
Sbjct: 108 ----------------------RKIAVDKKGE---ANFFTSQMIKDCMKKVVAVHLHQTV 142
Query: 212 CYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILY 271
+ L IKA+ +G +GA + I ++ Y N + + +L++
Sbjct: 143 QVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLI- 201
Query: 272 SDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGS 331
TE ++ D E + L E+VE GG
Sbjct: 202 --------TESTYATTIRDSKRCRER--DFLKKVHETVER-----------------GGK 234
Query: 332 VLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKL 391
VLIP+ +G +L + F E +LK+PIY + + E+ Y W Q+ K
Sbjct: 235 VLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPW-TNQKIRKT 293
Query: 392 FSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSG 451
F +F K I F + + P +VF+ L G ++ + R+W+G
Sbjct: 294 FVQRNMFEF------KHIKAF-----DRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAG 342
Query: 452 DHNSLLVL 459
+ +++++
Sbjct: 343 NEKNMVIM 350
>sp|Q5NVE6|INT11_PONAB Integrator complex subunit 11 OS=Pongo abelii GN=CPSF3L PE=2 SV=2
Length = 600
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/368 (20%), Positives = 136/368 (36%), Gaps = 79/368 (21%)
Query: 94 FIDVVLISS-PMGMLG-LPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYG 151
F+D V+IS + G LP+ + M G+ IY+T I +++E+
Sbjct: 60 FLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDY------------ 107
Query: 152 AEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEA 211
RKIA+ + G +KDC+ KV + +
Sbjct: 108 ----------------------RKIAVDKKGE---ANFFTSQMIKDCMKKVVAVHLHQTV 142
Query: 212 CYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILY 271
+ L IKA+ +G +GA + I ++ Y N + + +L++
Sbjct: 143 QVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLI- 201
Query: 272 SDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGS 331
TE ++ D E + L E+VE GG
Sbjct: 202 --------TESTYATTIRDSKRCRER--DFLKKVHETVER-----------------GGK 234
Query: 332 VLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKL 391
VLIP+ +G +L + F E +LK+PIY + + E+ Y W Q+ K
Sbjct: 235 VLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPW-TNQKIRKT 293
Query: 392 FSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSG 451
F +F K I F + + P +VF+ L G ++ + R+W+G
Sbjct: 294 FVQRNMFEF------KHIKAF-----DRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAG 342
Query: 452 DHNSLLVL 459
+ +++++
Sbjct: 343 NEKNMVIM 350
>sp|Q2YDM2|INT11_BOVIN Integrator complex subunit 11 OS=Bos taurus GN=CPSF3L PE=2 SV=2
Length = 599
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 78/368 (21%), Positives = 134/368 (36%), Gaps = 79/368 (21%)
Query: 94 FIDVVLISS-PMGMLG-LPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYG 151
F+D V+IS + G LP+ + M G+ IY+T+ I +++E+
Sbjct: 60 FLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDY------------ 107
Query: 152 AEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEA 211
RKIA+ + G +KDC+ KV + +
Sbjct: 108 ----------------------RKIAVDKKGE---ANFFTSQMIKDCMKKVVAVHLHQTV 142
Query: 212 CYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILY 271
+ L IKA+ +G +GA + I ++ Y N + + +
Sbjct: 143 QVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAW---------ID 193
Query: 272 SDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGS 331
SL TE ++ D E + L E+VE GG
Sbjct: 194 KCRPSLLITESTYATTIRDSKRCRER--DFLKKVHETVER-----------------GGK 234
Query: 332 VLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKL 391
VLIP+ +G +L + F E LK PIY + + E+ Y W Q+ K
Sbjct: 235 VLIPVFALGRAQELCILLETFWERMDLKAPIYFSTGLTEKANHYYKLFIPW-TNQKIRKT 293
Query: 392 FSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSG 451
F +F K I F + + P +VF+ L G ++ + R+W+G
Sbjct: 294 FVQRNMFEF------KHIKAF-----DRAFADSPGPMVVFATPGMLHAGQSLQIFRKWAG 342
Query: 452 DHNSLLVL 459
+ +++++
Sbjct: 343 NEKNMVIM 350
>sp|Q5ZIH0|INT11_CHICK Integrator complex subunit 11 OS=Gallus gallus GN=CPSF3L PE=2 SV=1
Length = 600
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/370 (20%), Positives = 134/370 (36%), Gaps = 79/370 (21%)
Query: 92 VSFIDVVLISS-PMGMLG-LPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQF 149
F+D V+IS + G LP+ + M G+ IY+T I +++E+
Sbjct: 58 TDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDY---------- 107
Query: 150 YGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGE 209
RKI + + G +KDC+ KV + +
Sbjct: 108 ------------------------RKITVDKKGET---NFFTSQMIKDCMKKVVAVHLHQ 140
Query: 210 EACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLI 269
+ L IKA+ +G +GA + I ++ Y N + + DL+
Sbjct: 141 TVQVDEELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYNMTPDRHLGAAWIDKCRPDLL 200
Query: 270 LYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAG 329
+ TE ++ D E + L E+VE G
Sbjct: 201 I---------TESTYATTIRDSKRCRER--DFLKKVHETVER-----------------G 232
Query: 330 GSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQE 389
G VLIP+ +G +L + F E +LK PIY + + E+ Y W Q+
Sbjct: 233 GKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITW-TNQKIR 291
Query: 390 KLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRW 449
K F +F K I F + + P +VF+ L G ++ + R+W
Sbjct: 292 KTFVQRNMFEF------KHIKAF-----DRAFADNPGPMVVFATPGMLHAGQSLQIFRKW 340
Query: 450 SGDHNSLLVL 459
+G+ +++++
Sbjct: 341 AGNEKNMVIM 350
>sp|Q503E1|INT11_DANRE Integrator complex subunit 11 OS=Danio rerio GN=cpsf3l PE=2 SV=1
Length = 598
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/368 (20%), Positives = 135/368 (36%), Gaps = 79/368 (21%)
Query: 94 FIDVVLISS-PMGMLG-LPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYG 151
F+D V+IS + G LP+++ M G+ IY+T I +++E+
Sbjct: 60 FLDCVIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDF------------ 107
Query: 152 AEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEA 211
RKI + + G +KDC+ KV L +
Sbjct: 108 ----------------------RKITVDKKGET---NFFTSQMIKDCMKKVVPLNLHQTV 142
Query: 212 CYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILY 271
+ L IKA+ +G +GA I ++ Y N + + D+++
Sbjct: 143 QVDDELEIKAYYAGHVLGAAMVQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPDILI- 201
Query: 272 SDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGS 331
+E ++ D E + L E+VE GG
Sbjct: 202 --------SESTYATTIRDSKRCRER--DFLKKVHETVER-----------------GGK 234
Query: 332 VLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKL 391
VLIP+ +G +L + F E +LK PIY + + E+ Y W Q+ K
Sbjct: 235 VLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITW-TNQKIRKT 293
Query: 392 FSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSG 451
F +F K I F ++ + P +VF+ L G ++ + ++W+G
Sbjct: 294 FVQRNMFEF------KHIKAFDRSYA-----DNPGPMVVFATPGMLHAGQSLQIFKKWAG 342
Query: 452 DHNSLLVL 459
+ +++++
Sbjct: 343 NEKNMVIM 350
>sp|A8XUS3|CPSF2_CAEBR Probable cleavage and polyadenylation specificity factor subunit 2
OS=Caenorhabditis briggsae GN=cpsf-2 PE=3 SV=2
Length = 842
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 75/374 (20%), Positives = 150/374 (40%), Gaps = 82/374 (21%)
Query: 95 IDVVLIS--SPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGA 152
I VLIS P+ + GLP+L G +A +Y T ++GQ+ + +L+ +++ +F
Sbjct: 55 ISAVLISHPDPLHLGGLPYLVAKCGLTAPVYCTVPVYKMGQMFIYDLVYSHLDVEEF--- 111
Query: 153 EESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEAC 212
Q +++++ A K+ E+
Sbjct: 112 ------QHYSLDDVDM---AFEKV--------------------------------EQVK 130
Query: 213 YNGILIIKAFSSGLDIGA--CNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLIL 270
YN +++K SG++ A +I G+ I I+G + + +DF++R
Sbjct: 131 YNQTVVLKG-DSGVNFTAMPAGHMIGGSMWRICRITGEDII--YCVDFNHR--------- 178
Query: 271 YSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDE--SVEEMEKLAFICSCAIDSVKA 328
+D S S DN N L+ + +++ ++ ++ + + + +V+
Sbjct: 179 ----------KDRHLSGCSFDNFNRPHLLITGAHHISLPQMKRKDRDEQLVTKILRTVRQ 228
Query: 329 GGSVLIPINRVGVFLQ---LLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCK 385
G +I I+ G L+ LL+Q+ + + ++S VA ++ + + EW+
Sbjct: 229 KGDCMIVIDTAGRVLELAYLLDQLWANQDAGLSTYNLVMMSHVASSVVQFAKSQLEWM-- 286
Query: 386 QRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHL 445
EKLF D A K +++ VHS L+ + P +V + G + L
Sbjct: 287 --DEKLFRYDSSSARYNPFTLKNVNL---VHSHLELIKIRSPKVVLCSSQDMETGFSREL 341
Query: 446 LRRWSGDHNSLLVL 459
W D + ++L
Sbjct: 342 FLDWCADQRNGVIL 355
>sp|Q8GUU3|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II
OS=Arabidopsis thaliana GN=CPSF73-II PE=1 SV=2
Length = 613
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 85/458 (18%), Positives = 155/458 (33%), Gaps = 126/458 (27%)
Query: 1 MKFTCLCQGGGFNF-PPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDS 59
M CL G G C ++ ++G ++FDC + + C +++
Sbjct: 1 MAIDCLVLGAGQEIGKSCVVVTINGKKIMFDCGMHMG----------------CDDHNRY 44
Query: 60 QNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFS 119
N + K D ++ I + + H+ +V LP+ T + G++
Sbjct: 45 PNFSLISKSGDFDNAISC----IIITHFHMDHVG--------------ALPYFTEVCGYN 86
Query: 120 AKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALG 179
IY++ + LM+E+ YR+ E EL +
Sbjct: 87 GPIYMSYPTKALSPLMLED-------YRRVMVDRRG---------EEELFTTT------- 123
Query: 180 EDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAK 239
H+ +C+ KV + + + L I+A+ +G +GA
Sbjct: 124 --------------HIANCMKKVIAIDLKQTIQVDEDLQIRAYYAGHVLGAVMVYAKMGD 169
Query: 240 GNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELM 299
I Y N + + ID+ +L+
Sbjct: 170 AAIVYTGDYNMTTDRHL----------------------GAAKIDRLQL--------DLL 199
Query: 300 NSLSNYDESVE------EMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFM 353
S S Y ++ E E L + C V GG LIP +G +L + +
Sbjct: 200 ISESTYATTIRGSKYPREREFLQAVHKC----VAGGGKALIPSFALGRAQELCMLLDDYW 255
Query: 354 ECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPL-FAHVKLIKEKKIHVF 412
E ++K+PIY S + + Y + W + +EK + +P F +VK IH
Sbjct: 256 ERMNIKVPIYFSSGLTIQANMYYKMLISWTSQNVKEKHNTHNPFDFKNVKDFDRSLIHA- 314
Query: 413 PAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWS 450
P PC++F+ L G ++ + + W+
Sbjct: 315 PG------------PCVLFATPGMLCAGFSLEVFKHWA 340
>sp|Q652P4|CPSF2_ORYSJ Cleavage and polyadenylation specificity factor subunit 2 OS=Oryza
sativa subsp. japonica GN=Os09g0569400 PE=2 SV=1
Length = 738
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 109/297 (36%), Gaps = 76/297 (25%)
Query: 95 IDVVLIS--SPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGA 152
ID VL+S M + LP+ + G SA +Y TE R+G L + Y F
Sbjct: 55 IDAVLLSHADTMHLGALPYAMKHLGLSAPVYATEPVFRLGILTL---------YDYFISR 105
Query: 153 EESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEAC 212
+ S ++++ V L++ +
Sbjct: 106 RQVSDFDLFTLDDIDA-----------------------------AFQNVVRLKYSQNHL 136
Query: 213 YNGI---LIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRA---IQGS 266
N ++I +G D+G W I+ ++ Y A+DF++R + G+
Sbjct: 137 LNDKGEGIVIAPHVAGHDLGGTVWKITKDGEDVVY----------AVDFNHRKERHLNGT 186
Query: 267 DLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSV 326
L SF + N+L+N+ V + ++ + +
Sbjct: 187 AL-----------------GSFVRPAVLITDAYNALNNH---VYKRQQDQDFIDALVKVL 226
Query: 327 KAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWL 383
GGSVL+PI+ G L++L + + L PIY +++V+ + Y + EW+
Sbjct: 227 TGGGSVLLPIDTAGRVLEILLILEQYWAQRHLIYPIYFLTNVSTSTVDYVKSFLEWM 283
>sp|Q9LKF9|CPSF2_ARATH Cleavage and polyadenylation specificity factor subunit 2
OS=Arabidopsis thaliana GN=CPSF100 PE=1 SV=2
Length = 739
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 71/378 (18%), Positives = 139/378 (36%), Gaps = 88/378 (23%)
Query: 93 SFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFY 150
S ID VL+S P + + LP+ + G SA +Y TE R+G L M Y QF
Sbjct: 53 STIDAVLLSHPDTLHIGALPYAMKQLGLSAPVYATEPVHRLGLLTM---------YDQFL 103
Query: 151 GAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEE 210
++ S ++++ + ++ ++ G G
Sbjct: 104 SRKQVSDFDLFTLDDIDSAFQNVIRLTYSQNYHLSGKG---------------------- 141
Query: 211 ACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRA---IQGSD 267
GI +I +G +G W I+ ++ Y A+D+++R + G+
Sbjct: 142 ---EGI-VIAPHVAGHMLGGSIWRITKDGEDVIY----------AVDYNHRKERHLNGT- 186
Query: 268 LILYSDLSSLDSTEDIDQSSFSDDNNNWE---ELMNSLSNYDESVEEMEKLAFICSCAID 324
+L S + D + +++ + E ++++S +
Sbjct: 187 -VLQSFVRPAVLITDAYHALYTNQTARQQRDKEFLDTISKH------------------- 226
Query: 325 SVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLC 384
++ GG+VL+P++ G L+LL + PIY ++ V+ + Y + EW+
Sbjct: 227 -LEVGGNVLLPVDTAGRVLELLLILEQHWSQRGFSFPIYFLTYVSSSTIDYVKSFLEWMS 285
Query: 385 KQRQEKLFSGDP---LFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGP 441
+ + L HV L+ ++ L P +V + SL G
Sbjct: 286 DSISKSFETSRDNAFLLRHVTLL----------INKTDLDNAPPGPKVVLASMASLEAGF 335
Query: 442 TIHLLRRWSGDHNSLLVL 459
+ W+ D +L++
Sbjct: 336 AREIFVEWANDPRNLVLF 353
>sp|Q58633|Y1236_METJA Uncharacterized protein MJ1236 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1236 PE=4 SV=1
Length = 634
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 14/140 (10%)
Query: 324 DSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWL 383
++ GG VLIP+ VG +L+ + P+Y+ + E +T PE+L
Sbjct: 401 ETTDRGGKVLIPVFGVGRAQELMLVLEEGYNQGIFNAPVYLDGMIWEATAIHT-AYPEYL 459
Query: 384 CKQRQEKLF-SGDPLFAHVKLIKEKKIHVFPAVHSP---KLLMNWQEPCIVFSPHWSLRL 439
K+ ++K+F GD F VF V S + +++ EPC++ + L
Sbjct: 460 SKEMRQKIFHEGDNPFLS---------EVFKRVGSTNERRKVIDSDEPCVILATSGMLTG 510
Query: 440 GPTIHLLRRWSGDHNSLLVL 459
GP++ L+ + D + ++
Sbjct: 511 GPSVEYLKHLAPDEKNAIIF 530
>sp|O17403|CPSF2_CAEEL Probable cleavage and polyadenylation specificity factor subunit 2
OS=Caenorhabditis elegans GN=cpsf-2 PE=3 SV=1
Length = 843
Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 70/374 (18%), Positives = 146/374 (39%), Gaps = 82/374 (21%)
Query: 95 IDVVLIS--SPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGA 152
I VLIS P+ + GLP+L G +A +Y T ++GQ+ + +++ +++ +F
Sbjct: 55 ISAVLISHPDPLHLGGLPYLVSKCGLTAPVYATVPVYKMGQMFIYDMVYSHLDVEEF--- 111
Query: 153 EESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEAC 212
+ L+ + +A K+ E+
Sbjct: 112 ---------EHYTLDDVDTAFEKV--------------------------------EQVK 130
Query: 213 YNGILIIKAFSSGLDIGA--CNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLIL 270
YN +++K SG+ A ++ G+ I ++G + + +DF+++
Sbjct: 131 YNQTVVLKG-DSGVHFTALPAGHMLGGSIWRICRVTGEDIV--YCVDFNHK--------- 178
Query: 271 YSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDE--SVEEMEKLAFICSCAIDSVKA 328
++ SF DN N L+ + +++ + ++ + + + +V+
Sbjct: 179 --------KERHLNGCSF--DNFNRPHLLITGAHHISLPQMRRKDRDEQLVTKILRTVRQ 228
Query: 329 GGSVLIPINRVGVFLQ---LLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCK 385
G +I I+ G L+ LL+Q+ + + ++S VA ++ + + EW+
Sbjct: 229 KGDCMIVIDTAGRVLELAHLLDQLWSNADAGLSTYNLVMMSHVASSVVQFAKSQLEWM-- 286
Query: 386 QRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHL 445
EKLF D A K + + HS + LM + P +V + G + L
Sbjct: 287 --NEKLFKYDSSSARYNPFTLKHVTL---CHSHQELMRVRSPKVVLCSSQDMESGFSREL 341
Query: 446 LRRWSGDHNSLLVL 459
W D + ++L
Sbjct: 342 FLDWCSDPRNGVIL 355
>sp|Q54YL3|INT11_DICDI Integrator complex subunit 11 homolog OS=Dictyostelium discoideum
GN=ints11 PE=3 SV=1
Length = 744
Score = 40.8 bits (94), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 74/359 (20%), Positives = 131/359 (36%), Gaps = 90/359 (25%)
Query: 108 GLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELE 167
LPF T M G+ IY+T I +++E+
Sbjct: 75 ALPFFTEMCGYDGPIYMTLPTKAICPILLEDY---------------------------- 106
Query: 168 LLPSALRKIALGEDGSELGGGCPCIAHVKDCISKV------QTLRFGEEACYNGILIIKA 221
RKI + + G +KDC+ KV QT++ EE L IKA
Sbjct: 107 ------RKITVEKKGET---NFFTAQMIKDCMKKVIPVNLHQTIKVDEE------LSIKA 151
Query: 222 FSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTE 281
+ +G +GA + ++ Y N + + D+++ TE
Sbjct: 152 YYAGHVLGAAMFYAKVGDESVVYTGDYNMTPDRHLGSAWIDQVKPDVLI---------TE 202
Query: 282 DIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGV 341
++ D E + L I C V+ GG VLIP+ +G
Sbjct: 203 TTYATTIRDSKRG---------------RERDFLKRIHEC----VEKGGKVLIPVFALGR 243
Query: 342 FLQLLEQIAIFMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAH 400
+L I + E +L IPIY + +AE+ Y W Q+ ++ F +F
Sbjct: 244 VQELCILIDSYWEQMNLGHIPIYFSAGLAEKANLYYKLFINW-TNQKIKQTFVKRNMF-D 301
Query: 401 VKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVL 459
K IK + H+ V +P + ++F+ L G ++ + ++W+ + ++ ++
Sbjct: 302 FKHIKPFQSHL---VDAPGAM-------VLFATPGMLHAGASLEVFKKWAPNELNMTII 350
>sp|Q57626|Y162_METJA Uncharacterized protein MJ0162 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0162 PE=3 SV=1
Length = 421
Score = 39.3 bits (90), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 19/148 (12%)
Query: 324 DSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLK-IPIYIISSVAEELLAYTNTIPEW 382
++++ GG V+IP+ +G ++L I ++ L+ +PIY S+ Y + I W
Sbjct: 204 ETIENGGKVIIPVFAIGRAQEILLIINNYIRSGKLRDVPIYTDGSLIHATAVYMSYI-NW 262
Query: 383 LCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSP--KLLMNWQEPCIVFSPHWSLRLG 440
L + +K + E +I+ F + L+ N +EPCI+ S ++ G
Sbjct: 263 LNPK--------------IKNMVENRINPFGEIKKADESLVFN-KEPCIIVSTSGMVQGG 307
Query: 441 PTIHLLRRWSGDHNSLLVLENEVDAELA 468
P + L+ N L++ + + L
Sbjct: 308 PVLKYLKLLKDPKNKLILTGYQAEGTLG 335
>sp|Q12102|CFT2_YEAST Cleavage factor two protein 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=CFT2 PE=1 SV=1
Length = 859
Score = 38.1 bits (87), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 324 DSVKAG----GSVLIPINRVGVFLQLLEQI-AIFMECSSL----KIPIYIISSVAEELLA 374
D++K G GSV+IP++ G FL L Q+ + E + + ++P+ I+S L
Sbjct: 232 DTLKKGLSSDGSVIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLT 291
Query: 375 YTNTIPEWLC 384
Y ++ EWL
Sbjct: 292 YAKSMLEWLS 301
>sp|O13794|YSH1_SCHPO Endoribonuclease ysh1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ysh1 PE=3 SV=2
Length = 757
Score = 37.0 bits (84), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 22/164 (13%)
Query: 312 MEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLL----EQIAIFMECSSLKIPIYIISS 367
+EK A + + +++ GG VL+P+ +G +LL E ++ S +PIY SS
Sbjct: 223 LEKEARLLNIIHSTIRNGGRVLMPVFALGRAQELLLILDEYWNNHLDLRS--VPIYYASS 280
Query: 368 VAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQE- 426
+A + +A T + + K+ E+ +F V S + L + +
Sbjct: 281 LARKCMAIFQTYVNMMNDNIR-------------KIFAERNPFIFRFVKSLRNLEKFDDI 327
Query: 427 -PCIVFSPHWSLRLGPTIHLLRRWSGD-HNSLLVLENEVDAELA 468
P ++ + L+ G + LL RW+ D N+LL+ V+ +A
Sbjct: 328 GPSVILASPGMLQNGVSRTLLERWAPDPRNTLLLTGYSVEGTMA 371
>sp|Q4PEJ3|YSH1_USTMA Endoribonuclease YSH1 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=YSH1 PE=3 SV=1
Length = 880
Score = 35.4 bits (80), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 21/150 (14%)
Query: 326 VKAGGSVLIPINRVGVFLQLL----EQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPE 381
+K GG VL+P+ +G +LL E A E S +PIY S++A++ ++ T
Sbjct: 246 IKRGGRVLLPVFVLGRAQELLLLLDEYWAAHPELHS--VPIYYASALAKKCISVYQTYIH 303
Query: 382 WLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQE--PCIVFSPHWSLRL 439
+ + + D F VF + + + L +++ PC++ + ++
Sbjct: 304 TMNDHIRTRFNRRDNPF------------VFKHISNLRSLEKFEDRGPCVMMASPGFMQS 351
Query: 440 GPTIHLLRRWSGD-HNSLLVLENEVDAELA 468
G + LL RW+ D N L+V V+ +A
Sbjct: 352 GVSRELLERWAPDKRNGLIVSGYSVEGTMA 381
>sp|Q6BMW3|YSH1_DEBHA Endoribonuclease YSH1 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=YSH1 PE=3
SV=2
Length = 815
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 90/188 (47%), Gaps = 27/188 (14%)
Query: 312 MEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLK-----IPIYIIS 366
+EK + + ++ GG +L+P+ +G +LL I E SL I IY S
Sbjct: 234 LEKETRMTNIIHSTLLKGGRILMPVFALGRAQELL---LILEEYWSLNDDLQNINIYYAS 290
Query: 367 SVAEELLA----YTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLM 422
S+A + +A YTN + + + +L + + K++ F + S K L
Sbjct: 291 SLARKCMAVYQTYTNIMNDSI------RLTT-----SATNSSKKQNPFQFKFIKSIKNLD 339
Query: 423 NWQE--PCIVFSPHWSLRLGPTIHLLRRWSGD-HNSLLVLENEVDAELAV-LPFKPISMK 478
+Q+ PC+V + L+ G + LL RW+ D N++++ V+ +A L +P +++
Sbjct: 340 KFQDFGPCVVVASPGMLQNGVSRELLERWAPDPKNAVIMTGYSVEGTMAKDLLTEPHTIQ 399
Query: 479 ASESSTLT 486
++ +S +T
Sbjct: 400 SAMNSDMT 407
>sp|P79101|CPSF3_BOVIN Cleavage and polyadenylation specificity factor subunit 3 OS=Bos
taurus GN=CPSF3 PE=2 SV=1
Length = 684
Score = 33.5 bits (75), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 303 SNYDESVEEM--EKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSS--L 358
S Y + E E+ A C+ D V GG LIP+ +G +LL + + +
Sbjct: 205 STYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELH 264
Query: 359 KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDP-LFAHVKLIK 405
IPIY SS+A++ +A T + + ++++ +P +F H+ +K
Sbjct: 265 DIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLK 312
>sp|Q9UKF6|CPSF3_HUMAN Cleavage and polyadenylation specificity factor subunit 3 OS=Homo
sapiens GN=CPSF3 PE=1 SV=1
Length = 684
Score = 33.5 bits (75), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 303 SNYDESVEEM--EKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSS--L 358
S Y + E E+ A C+ D V GG LIP+ +G +LL + + +
Sbjct: 205 STYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELH 264
Query: 359 KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDP-LFAHVKLIK 405
IPIY SS+A++ +A T + + ++++ +P +F H+ +K
Sbjct: 265 DIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLK 312
>sp|Q9QXK7|CPSF3_MOUSE Cleavage and polyadenylation specificity factor subunit 3 OS=Mus
musculus GN=Cpsf3 PE=1 SV=2
Length = 684
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 303 SNYDESVEEM--EKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSS--L 358
S Y + E E+ A C+ D V GG LIP+ +G +LL + + +
Sbjct: 205 STYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELH 264
Query: 359 KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDP-LFAHVKLIK 405
IPIY SS+A++ +A T + + ++++ +P +F H+ +K
Sbjct: 265 DIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLK 312
>sp|P09257|GB_VZVD Envelope glycoprotein B OS=Varicella-zoster virus (strain Dumas)
GN=gB PE=1 SV=2
Length = 931
Score = 33.1 bits (74), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 9 GGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQN 61
G GFN P I +V+G + F C + V S P+ FY+++ E + S++
Sbjct: 38 GSGFNGPGVFITSVTGVWLCFLCIFSMFVTAVVSVSPSSFYESLQVEPTQSED 90
>sp|Q4JR05|GB_VZVO Envelope glycoprotein B OS=Varicella-zoster virus (strain Oka
vaccine) GN=gB PE=1 SV=2
Length = 931
Score = 33.1 bits (74), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 9 GGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQN 61
G GFN P I +V+G + F C + V S P+ FY+++ E + S++
Sbjct: 38 GSGFNGPGVFITSVTGVWLCFLCIFSMFVTAVVSVSPSSFYESLQVEPTQSED 90
>sp|Q9GPS6|PIMT_DICDI Probable protein-L-isoaspartate O-methyltransferase
OS=Dictyostelium discoideum GN=pcmA PE=3 SV=1
Length = 316
Score = 32.3 bits (72), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 225 GLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDID 284
LDIG+ + ++ G++ +G H + R+I+ + LDST +D
Sbjct: 129 ALDIGSGSGYVTACLGHLMGCTGRVIGVEHIPELIERSIES--------IKRLDSTL-LD 179
Query: 285 QSSF--SDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVF 342
+ F D W++L + ++E ++ + ID +K GG +++P+ + F
Sbjct: 180 RIQFLVGDGIKGWKQLKYDIIYLGAAIESLQ----VARELIDQLKNGGRIVMPVGKSNDF 235
Query: 343 LQLL 346
+L+
Sbjct: 236 HELM 239
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 193,484,260
Number of Sequences: 539616
Number of extensions: 8187410
Number of successful extensions: 19094
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 18985
Number of HSP's gapped (non-prelim): 72
length of query: 520
length of database: 191,569,459
effective HSP length: 122
effective length of query: 398
effective length of database: 125,736,307
effective search space: 50043050186
effective search space used: 50043050186
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)