Query 009999
Match_columns 520
No_of_seqs 249 out of 2254
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 19:50:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009999.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009999hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1138 Predicted cleavage and 100.0 1.3E-72 2.9E-77 561.9 31.9 472 1-519 1-482 (653)
2 COG1782 Predicted metal-depend 100.0 1.4E-71 3E-76 556.7 31.7 399 1-514 181-607 (637)
3 KOG1136 Predicted cleavage and 100.0 3.1E-69 6.7E-74 515.0 30.7 392 1-512 4-414 (501)
4 TIGR03675 arCOG00543 arCOG0054 100.0 1E-65 2.2E-70 557.8 41.9 395 1-513 175-599 (630)
5 KOG1137 mRNA cleavage and poly 100.0 7.2E-61 1.6E-65 483.2 24.9 386 2-513 15-422 (668)
6 COG1236 YSH1 Predicted exonucl 100.0 2.6E-56 5.7E-61 466.6 36.2 380 1-514 1-396 (427)
7 KOG1135 mRNA cleavage and poly 100.0 6.9E-49 1.5E-53 405.7 31.7 337 2-460 3-353 (764)
8 TIGR00649 MG423 conserved hypo 100.0 1.7E-33 3.7E-38 297.0 32.1 356 1-515 1-387 (422)
9 COG0595 mRNA degradation ribon 99.9 9.3E-25 2E-29 231.7 24.8 356 1-514 9-396 (555)
10 PF10996 Beta-Casp: Beta-Casp 99.8 6.1E-21 1.3E-25 167.6 10.4 119 342-468 1-122 (126)
11 PRK11244 phnP carbon-phosphoru 99.7 3.9E-17 8.5E-22 160.6 12.9 159 1-271 1-184 (250)
12 TIGR02651 RNase_Z ribonuclease 99.7 3.9E-17 8.4E-22 164.9 12.2 172 2-292 1-234 (299)
13 TIGR02649 true_RNase_BN ribonu 99.7 2E-16 4.3E-21 160.0 11.5 164 3-271 1-229 (303)
14 PRK05184 pyrroloquinoline quin 99.6 1.5E-15 3.2E-20 153.1 12.8 175 1-272 1-219 (302)
15 PRK02113 putative hydrolase; P 99.6 2.3E-15 5E-20 148.2 12.3 166 1-272 1-190 (252)
16 TIGR03307 PhnP phosphonate met 99.6 1.5E-14 3.3E-19 141.1 12.0 145 14-271 26-174 (238)
17 TIGR02108 PQQ_syn_pqqB coenzym 99.6 2.5E-14 5.5E-19 143.7 12.6 159 15-272 38-219 (302)
18 PRK00055 ribonuclease Z; Revie 99.5 6.7E-15 1.5E-19 146.1 7.3 88 1-134 2-100 (270)
19 COG1234 ElaC Metal-dependent h 99.4 6.2E-13 1.4E-17 133.1 10.7 88 1-134 2-100 (292)
20 PRK00685 metal-dependent hydro 99.4 4.9E-12 1.1E-16 122.5 14.5 149 1-271 1-163 (228)
21 PRK02126 ribonuclease Z; Provi 99.4 3.9E-12 8.5E-17 129.6 13.0 73 14-136 15-94 (334)
22 PRK04286 hypothetical protein; 99.3 1.5E-11 3.3E-16 123.8 12.7 194 1-273 1-210 (298)
23 PF12706 Lactamase_B_2: Beta-l 99.3 4.7E-12 1E-16 119.1 7.8 120 93-272 28-154 (194)
24 smart00849 Lactamase_B Metallo 99.2 3.7E-11 8.1E-16 111.3 7.6 140 12-251 3-145 (183)
25 KOG1361 Predicted hydrolase in 99.1 1.5E-09 3.3E-14 112.5 15.9 171 94-365 112-292 (481)
26 TIGR02650 RNase_Z_T_toga ribon 99.0 1.9E-09 4.2E-14 105.4 12.8 131 92-293 38-214 (277)
27 PRK11709 putative L-ascorbate 98.9 3.2E-08 6.9E-13 101.6 14.5 67 201-271 160-248 (355)
28 PRK11921 metallo-beta-lactamas 98.8 1.8E-08 3.9E-13 105.7 10.8 94 91-249 66-163 (394)
29 PF00753 Lactamase_B: Metallo- 98.7 2.7E-08 5.8E-13 92.0 7.0 143 13-251 4-148 (194)
30 PRK05452 anaerobic nitric oxid 98.7 9E-08 2E-12 102.5 10.7 96 91-249 68-167 (479)
31 KOG2121 Predicted metal-depend 98.5 2.7E-08 5.8E-13 106.6 0.6 61 215-294 594-655 (746)
32 PF13483 Lactamase_B_3: Beta-l 98.5 1.2E-06 2.5E-11 80.3 10.9 66 202-271 62-134 (163)
33 COG1237 Metal-dependent hydrol 98.5 2.2E-07 4.8E-12 88.9 5.8 87 1-130 1-96 (259)
34 PF07521 RMMBL: RNA-metabolisi 98.4 1.8E-07 3.8E-12 65.4 3.6 39 473-513 3-41 (43)
35 COG1235 PhnP Metal-dependent h 98.4 9.7E-07 2.1E-11 87.8 7.8 40 92-133 60-101 (269)
36 TIGR03413 GSH_gloB hydroxyacyl 98.4 1.2E-06 2.6E-11 86.1 8.3 83 94-250 43-128 (248)
37 TIGR00361 ComEC_Rec2 DNA inter 98.3 2.3E-06 5.1E-11 95.6 11.4 158 2-272 441-606 (662)
38 PLN02469 hydroxyacylglutathion 98.2 6E-06 1.3E-10 81.4 10.5 86 94-249 46-136 (258)
39 COG0426 FpaA Uncharacterized f 98.2 6.4E-06 1.4E-10 84.1 8.9 130 13-250 34-167 (388)
40 COG0491 GloB Zn-dependent hydr 98.1 8.8E-06 1.9E-10 78.9 9.0 45 203-251 125-170 (252)
41 PLN02398 hydroxyacylglutathion 98.1 2E-05 4.4E-10 79.9 11.0 86 93-250 120-208 (329)
42 PRK10241 hydroxyacylglutathion 98.1 1.1E-05 2.4E-10 79.4 8.4 82 94-250 45-129 (251)
43 PRK11539 ComEC family competen 98.1 1.6E-05 3.5E-10 90.2 10.5 154 2-272 502-664 (755)
44 PF02112 PDEase_II: cAMP phosp 97.9 0.00033 7.2E-09 71.1 15.9 116 93-252 78-219 (335)
45 COG2220 Predicted Zn-dependent 97.9 0.00019 4.1E-09 70.9 13.4 66 201-271 101-179 (258)
46 COG2333 ComEC Predicted hydrol 97.8 0.00018 3.8E-09 71.8 11.1 120 90-272 86-214 (293)
47 PLN02962 hydroxyacylglutathion 97.7 0.00012 2.7E-09 71.7 8.6 43 205-249 104-151 (251)
48 COG2248 Predicted hydrolase (m 97.5 0.0058 1.2E-07 58.5 16.6 65 206-273 137-209 (304)
49 KOG0813 Glyoxylase [General fu 96.7 0.007 1.5E-07 59.1 8.6 43 205-249 96-140 (265)
50 PF07522 DRMBL: DNA repair met 95.0 0.15 3.2E-06 43.3 8.3 80 426-505 13-102 (110)
51 PF14597 Lactamase_B_5: Metall 94.8 0.03 6.5E-07 51.2 3.8 86 91-249 52-137 (199)
52 PF13691 Lactamase_B_4: tRNase 94.1 0.1 2.3E-06 39.4 4.7 23 15-37 12-35 (63)
53 COG5212 PDE1 Low-affinity cAMP 93.0 0.34 7.5E-06 47.1 7.3 112 93-252 111-235 (356)
54 KOG3592 Microtubule-associated 89.6 0.25 5.3E-06 53.9 2.8 24 91-114 78-103 (934)
55 KOG1137 mRNA cleavage and poly 86.4 2 4.4E-05 45.8 7.1 101 1-139 151-259 (668)
56 KOG3798 Predicted Zn-dependent 74.8 20 0.00044 34.8 8.8 55 216-271 197-261 (343)
57 KOG4736 Uncharacterized conser 63.7 19 0.00042 35.7 6.3 40 211-252 173-214 (302)
58 PRK09375 quinolinate synthetas 39.9 51 0.0011 33.5 5.2 74 440-516 54-132 (319)
59 KOG0814 Glyoxylase [General fu 36.6 69 0.0015 29.5 4.9 41 205-249 100-141 (237)
60 KOG0390 DNA repair protein, SN 33.4 2.4E+02 0.0053 32.3 9.6 73 311-385 243-323 (776)
61 KOG1135 mRNA cleavage and poly 32.1 50 0.0011 36.7 3.8 40 472-513 532-571 (764)
62 PRK11188 rrmJ 23S rRNA methylt 28.0 60 0.0013 30.7 3.4 39 317-355 146-184 (209)
63 COG0293 FtsJ 23S rRNA methylas 27.6 1.4E+02 0.0031 28.2 5.7 37 319-355 142-178 (205)
64 PRK02261 methylaspartate mutas 23.3 1.7E+02 0.0036 25.8 5.0 85 425-509 2-90 (137)
65 COG0279 GmhA Phosphoheptose is 22.6 6.1E+02 0.013 23.3 10.1 52 315-366 27-80 (176)
66 COG2927 HolC DNA polymerase II 21.6 1.5E+02 0.0033 26.4 4.3 35 317-351 17-51 (144)
67 PF07685 GATase_3: CobB/CobQ-l 20.9 1.9E+02 0.0042 25.8 5.1 32 316-350 29-60 (158)
68 PF03641 Lysine_decarbox: Poss 20.9 2.3E+02 0.0049 24.6 5.4 54 328-389 54-109 (133)
69 PRK00685 metal-dependent hydro 20.0 1.4E+02 0.0031 28.1 4.3 31 485-517 168-198 (228)
No 1
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=1.3e-72 Score=561.94 Aligned_cols=472 Identities=31% Similarity=0.544 Sum_probs=423.1
Q ss_pred CeEEEcCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCccccccc---ccCC-cccccccc--ccCCCCcccc
Q 009999 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAI---CKEN-SDSQNRQK--VEKPLDANDL 74 (520)
Q Consensus 1 mkl~~lGg~~~~~~~sc~ll~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~---~~~~-~~~~~~~~--~~~~~~~~~l 74 (520)
|++|++.+. .+-.|.++++...+||+|||++++...+|+|.|...++++ |++. .+|.+... .+|+++.+.+
T Consensus 1 M~~t~~sv~---~t~pc~llk~~~~rIllDcpld~t~~~nFlPlp~~qSpr~~n~p~~~~~~d~~kfq~~elke~~~rvf 77 (653)
T KOG1138|consen 1 MEGTIGSVS---STYPCKLLKLQRRRILLDCPLDLTAILNFLPLPGVQSPRYSNLPSLDAQNDIQKFQDLELKECCGRVF 77 (653)
T ss_pred CceEEEeec---cCCCchheeccceeEEecCCcchhhhhccccCccccCcccccCccccccCccchhhhHHHHHhCCceE
Confidence 788887765 5889999999999999999999999999999986666655 5444 22333332 3788899988
Q ss_pred cccccccccccccccccCCcccEEEecCCCCCCchhhhhcccCCceeEEEeHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 009999 75 IFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEE 154 (520)
Q Consensus 75 ~~~~p~~~~~~~~~~~~~~~id~IlISH~DH~g~LP~L~~~~~~~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~ 154 (520)
.++.|+|..| ..+.++.+.||+||||++..+.||||++++.||.|+||+|++|+++|+++|+|.+.+.+.. |..
T Consensus 78 vesppe~~l~-~t~lld~stiDvILISNy~~mlgLPfiTentGF~gkiY~TE~t~qiGrllMEelv~fier~-----p~~ 151 (653)
T KOG1138|consen 78 VESPPEFTLP-ATHLLDASTIDVILISNYMGMLGLPFITENTGFFGKIYATEPTAQIGRLLMEELVSFIERF-----PKA 151 (653)
T ss_pred EcCCchhccc-hhhhhcccceeEEEEcchhhhcccceeecCCCceeEEEEechHHHHHHHHHHHHHHHHHhc-----ccc
Confidence 8888877766 4466899999999999999999999999999999999999999999999999999887742 666
Q ss_pred CCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCch--HHHHHHHHhhceeeccCCeEEeCCCEEEEEEecCCCCccEE
Q 009999 155 SSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPC--IAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACN 232 (520)
Q Consensus 155 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dv~~~~~~i~~~~y~~~~~l~~~~~i~~~~aGH~lGs~~ 232 (520)
++++.|++.-+....|+++++. .+...|+++ .+|++.|+++++.+.|+|++++.|.+.|++..+||.+||++
T Consensus 152 ~S~~~Wk~k~~~~~lpsplk~~------~~~~~Wr~~ysl~Dv~sclsKVq~v~f~ekidlfga~~vtplsSG~~lGSsn 225 (653)
T KOG1138|consen 152 SSAPLWKKKLDSELLPSPLKKA------VFLGSWRRLYSLDDVESCLSKVQGVGFAEKIDLFGALIVTPLSSGYDLGSSN 225 (653)
T ss_pred ccchhhhhhhhhhhcCCCchhh------ccccceeeeeehhHHHHHHHhheecccceeeeccceEEEEeccccccccccc
Confidence 7788999997777778776652 225579988 99999999999999999999998899999999999999999
Q ss_pred EEEEeCCeEEEEecCCCCCCCCCCccccccCCCCCEEEEcCCCCCCCcccCCCCccccCCCchhHhhhccCCCchhHHHH
Q 009999 233 WIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEM 312 (520)
Q Consensus 233 ~~I~~~~~~i~Y~sgD~~~~~~~~~~~~~~~~~~DvLI~~~~~~~~~~~~~~~estyg~~~~~~~~~~~~~~~~~~~~e~ 312 (520)
|.|....+++.|+||.....+|+.+++...++.+|+||++++++++. . ++ +
T Consensus 226 W~I~t~nek~sYvS~Ss~ltth~r~md~a~Lk~~Dvli~T~lsql~t-------a---np-----------------d-- 276 (653)
T KOG1138|consen 226 WLINTPNEKLSYVSGSSFLTTHPRPMDQAGLKETDVLIYTGLSQLPT-------A---NP-----------------D-- 276 (653)
T ss_pred eEEecCCcceEEEecCcccccCCccccccccccccEEEEeccccccc-------C---Cc-----------------c--
Confidence 99999999999999988888899999999999999999999988861 1 11 1
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhCCC-ceeEEEEcchHHHHHHHHHHhHHHHHHHHHhhh
Q 009999 313 EKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKL 391 (520)
Q Consensus 313 ~~l~~l~~~I~~tl~~gG~VLIP~~~~Gr~qEll~~L~~~~~~~~l-~~pI~~~s~~a~~~~~~~~~~~e~l~~~~~~~~ 391 (520)
++..+||..|..+++++|+||+|++++|.+.||++.|.+....+++ ++|||++||+|+..+++.+++.|||+..+|+++
T Consensus 277 ~m~gelc~nvt~~~rn~GsvL~PcyPsGviydl~Ecls~~idna~ls~~P~yfISpvadSsla~s~ilaEwls~akqnkv 356 (653)
T KOG1138|consen 277 EMGGELCKNVTLTGRNHGSVLLPCYPSGVIYDLIECLSQDIDNAGLSDTPIYFISPVADSSLATSDILAEWLSLAKQNKV 356 (653)
T ss_pred chhhhHHHHHHHHhhcCCceeeeccCCchhhHHHHHhhhcccccCCcCCcceEecccchhhhhHHHHHHHHHHhhhccce
Confidence 1235689999999999999999999999999999999999999988 899999999999999999999999999999999
Q ss_pred ccCCCCCcceeeeeccccccccccCChhhhccCCCCEEEEecCCCCCcchHHHHHHHHcCCCCCceeec-CCcchhhccC
Q 009999 392 FSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLE-NEVDAELAVL 470 (520)
Q Consensus 392 ~~~~~pf~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~Vv~as~~~l~~G~s~~~l~~~~~~~~n~iil~-~~~~~~~~~~ 470 (520)
|.|+.||+|..+++++|+.++.++.+ .+++.++.|||+|++|.+++.|+++++++-|+.+|+|++|+| |+.+...++.
T Consensus 357 ylpe~p~~hs~lI~~~rlkiy~sl~g-~fSndfrqpcvvf~~H~SlRfgdv~h~~e~~g~sp~NsvI~tdpD~~~~~vl~ 435 (653)
T KOG1138|consen 357 YLPEAPFPHSTLITINRLKIYLSLLG-LFSNDFRQPCVVFMGHPSLRFGDVVHFLECWGLSPKNSVIFTDPDFSYLLVLA 435 (653)
T ss_pred eccCCCCCCceEEeecceeehHHHHH-HHhhhcccceeEecCCcchhhhHHHHHHHHhcCCCCCceEEeCCCCchhhhhc
Confidence 99999999999999999999999876 488999999999999999999999999999999999999986 6799999999
Q ss_pred CCceeeeEEEEecccCCCCHHHHHHhhhhcCCCCceeEeeecccccccC
Q 009999 471 PFKPISMKASESSTLTKDTATEVSSVSRGMEDSCQFFRCYFILSLPLFR 519 (520)
Q Consensus 471 ~~~~v~~~v~~~~~s~Had~~~l~~~i~~~~p~~~~~~~~~~~~~~~~~ 519 (520)
||+|+.||+.++|++...+++++-++++.+||+ .|.|.-.|+||..+
T Consensus 436 PfrpLamK~i~cpidtrlnfqql~kLlkelqPk--~vlcpeaytqp~~~ 482 (653)
T KOG1138|consen 436 PFRPLAMKIIYCPIDTRLNFQQLPKLLKELQPK--IVLCPEAYTQPIPL 482 (653)
T ss_pred CCccccceeEeccccccccHHHHHHHHHHhCCC--EEEChhhhcCCCCc
Confidence 999999999999999999999999999999999 88999999999764
No 2
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=100.00 E-value=1.4e-71 Score=556.69 Aligned_cols=399 Identities=17% Similarity=0.220 Sum_probs=327.8
Q ss_pred CeEEEcCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccccccccccCCCCcccccccccc
Q 009999 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (520)
Q Consensus 1 mkl~~lGg~~~~~~~sc~ll~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 80 (520)
.++|+|||. .++|+||++|++.+.+||+|||+..... +. ++.|+
T Consensus 181 vRvt~LGg~-~EVGRSa~lv~T~eSrVLlDcG~n~a~~--------~~---------------------------~~~Py 224 (637)
T COG1782 181 VRVTALGGF-REVGRSALLVSTPESRVLLDCGVNVAGN--------GE---------------------------DAFPY 224 (637)
T ss_pred EEEEeeccc-hhccceeEEEecCCceEEEeccccCCCC--------cc---------------------------ccCcc
Confidence 378999999 8999999999999999999999996531 10 33566
Q ss_pred cccccccccccCCcccEEEecCC--CCCCchhhhhcccCCceeEEEeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 009999 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (520)
Q Consensus 81 ~~~~~~~~~~~~~~id~IlISH~--DH~g~LP~L~~~~~~~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~ 158 (520)
+..|+ +.+..+|||+|||| ||+|-||+|++ +||+||||||+||++++-++..|++.+.+.
T Consensus 225 l~vpE----~~~~~lDAViiTHAHLDH~G~lP~Lfk-Ygy~GPVY~T~PTRDlm~LLq~Dyi~va~k------------- 286 (637)
T COG1782 225 LDVPE----FQPDELDAVIITHAHLDHCGFLPLLFK-YGYDGPVYCTPPTRDLMVLLQLDYIEVAEK------------- 286 (637)
T ss_pred ccccc----ccccccceEEEeecccccccchhhhhh-cCCCCCeeeCCCcHHHHHHHHHHHHHHHHh-------------
Confidence 65442 23448999999999 99999999999 899999999999999999999999987653
Q ss_pred cchhhhHhhhchhhhhhhhccCCCCCCCCCCch-HHHHHHHHhhceeeccCCeEEeCCCEEEEEEecCCCCccEEEEEE-
Q 009999 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPC-IAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIIS- 236 (520)
Q Consensus 159 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dv~~~~~~i~~~~y~~~~~l~~~~~i~~~~aGH~lGs~~~~I~- 236 (520)
.|. .+ |+ .+||+.++.+..+++|++..++..++++|+++|||++||++..+-
T Consensus 287 ----------------------eg~-~p---pY~~k~v~~~lkhtItldYgevTDIaPDirLTf~NAGHILGSA~~HlHI 340 (637)
T COG1782 287 ----------------------EGG-EP---PYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYNAGHILGSAMAHLHI 340 (637)
T ss_pred ----------------------cCC-CC---CCCHHHHHHHHheeeeeccCcccccCCccEEEEecccchhcceeeEEEe
Confidence 121 11 45 899999999999999999999998999999999999999997765
Q ss_pred -eCCeEEEEecCCCCCCCCCCcccc--ccCCCCCEEEEcCCCCCCCcccCCCCccccCCCchhHhhhccCCCchhHHHHH
Q 009999 237 -GAKGNIAYISGSNFASGHAMDFDY--RAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEME 313 (520)
Q Consensus 237 -~~~~~i~Y~sgD~~~~~~~~~~~~--~~~~~~DvLI~~~~~~~~~~~~~~~estyg~~~~~~~~~~~~~~~~~~~~e~~ 313 (520)
.+...|+| |||+.+.... .+++ ...+.++.||+ |||||+++.. .++|++.
T Consensus 341 GdGlyNi~y-TGDfk~~~tr-Ll~~A~n~FpRvEtlim--------------EsTYGg~~d~-------q~~R~ea---- 393 (637)
T COG1782 341 GDGLYNIVY-TGDFKFEKTR-LLEPANNKFPRVETLIM--------------ESTYGGRDDV-------QPPREEA---- 393 (637)
T ss_pred cCCceeEEE-ecccccceee-ecChhhccCcchhheee--------------eeccCCcccc-------CccHHHH----
Confidence 45679999 9999764321 2222 24567899999 9999976543 1233322
Q ss_pred HHHHHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhCCC-ceeEEEEcchHHHHHHHHHHhHHHHHHHHHhhhc
Q 009999 314 KLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLF 392 (520)
Q Consensus 314 ~l~~l~~~I~~tl~~gG~VLIP~~~~Gr~qEll~~L~~~~~~~~l-~~pI~~~s~~a~~~~~~~~~~~e~l~~~~~~~~~ 392 (520)
.++|.+.|++|+++||+||||+|++||+||++..|+++++++.+ .+|||+| +|..++++++..|+|||+...+..++
T Consensus 394 -E~~L~~vi~~t~~rGGKvLIP~fAVGR~QEvM~VLee~mr~g~ipe~PVYlD-GMI~EatAIhtaYPEyL~~~lr~~I~ 471 (637)
T COG1782 394 -EKELIKVINDTLKRGGKVLIPVFAVGRSQEVMIVLEEAMRKGLIPEVPVYLD-GMIWEATAIHTAYPEYLNKELRERIF 471 (637)
T ss_pred -HHHHHHHHHHHHhcCCeEEEEeeeccccceehhHHHHHHhcCCCCCCceeee-eeeeehhhhhhcCHHhhhHHHHHHHh
Confidence 25678899999999999999999999999999999999999888 6999998 89999999999999999999988887
Q ss_pred -cCCCCCcceeeeeccccccccccCChhhhccCCCCEEEEecCCCCCcchHHHHHHHHcCCCCCceeecCCcchhhcc--
Q 009999 393 -SGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAV-- 469 (520)
Q Consensus 393 -~~~~pf~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~Vv~as~~~l~~G~s~~~l~~~~~~~~n~iil~~~~~~~~~~-- 469 (520)
.++|||-...+-+- .+-+.++.......||||+||||||+||+++.||+.|+.||+|+++|+||+......
T Consensus 472 ~~g~NPF~se~f~~V------~~~~~r~~i~~~~ep~iIlaTSGMlnGGPvveyfk~lA~DprntliFVgYQAeGTLGRr 545 (637)
T COG1782 472 HEGENPFLSEIFKRV------EGSDERQEIIESDEPAIILATSGMLNGGPVVEYFKHLAPDPKNTLIFVGYQAEGTLGRR 545 (637)
T ss_pred cCCCCCccccceeec------CChhHHHHHhcCCCCeEEEeccccccCCcHHHHHHHhCCCCCceEEEEEeccCcchhhh
Confidence 58899944332211 111223345567899999999999999999999999999999999999987543221
Q ss_pred --------------CC--CceeeeEEEEe-cccCCCCHHHHHHhhhhcCCCCceeEeeeccc
Q 009999 470 --------------LP--FKPISMKASES-STLTKDTATEVSSVSRGMEDSCQFFRCYFILS 514 (520)
Q Consensus 470 --------------~~--~~~v~~~v~~~-~~s~Had~~~l~~~i~~~~p~~~~~~~~~~~~ 514 (520)
+. ...++|+|+.+ .||+|+|+.||++++++++|+..+|+|.||.-
T Consensus 546 iq~G~kEipi~~~~G~te~i~inMeV~tieGFSGHsdrrqL~~yvr~~~PkP~ki~~~HGe~ 607 (637)
T COG1782 546 IQSGAKEIPIPGEDGKTEVIKVNMEVETIEGFSGHSDRRQLMKYVRRMNPKPEKILLNHGEP 607 (637)
T ss_pred hhcCceecccccCCCCeEEEEEEEEEEEecCcCCCccHHHHHHHHHhcCCCCceeEeecCCh
Confidence 11 13678999999 69999999999999999999999999999964
No 3
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=3.1e-69 Score=514.96 Aligned_cols=392 Identities=20% Similarity=0.286 Sum_probs=323.8
Q ss_pred CeEEEcCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccccccccccCCCCcccccccccc
Q 009999 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (520)
Q Consensus 1 mkl~~lGg~~~~~~~sc~ll~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 80 (520)
|++++||+| +++|+||+++.++|.+||+|||++++. +. +.++||++++...-+
T Consensus 4 i~v~pLGAG-QdvGrSCilvsi~Gk~iM~DCGMHMG~--------nD-----------------~rRfPdFSyI~~~g~- 56 (501)
T KOG1136|consen 4 IKVTPLGAG-QDVGRSCILVSIGGKNIMFDCGMHMGF--------ND-----------------DRRFPDFSYISKSGR- 56 (501)
T ss_pred ceEEeccCC-cccCceEEEEEECCcEEEEeccccccc--------Cc-----------------cccCCCceeecCCCC-
Confidence 589999999 899999999999999999999999774 11 236778877632221
Q ss_pred cccccccccccCCcccEEEecCC--CCCCchhhhhcccCCceeEEEeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 009999 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (520)
Q Consensus 81 ~~~~~~~~~~~~~~id~IlISH~--DH~g~LP~L~~~~~~~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~ 158 (520)
-...||+|+|||+ ||+|+|||+.+.-|++||||||.||+++++.+|+|+-+++-.
T Consensus 57 ----------~~~~idCvIIsHFHlDHcGaLPyfsEv~GY~GPIYMt~PTkaicPvlLeDyRkv~vd------------- 113 (501)
T KOG1136|consen 57 ----------FTDAIDCVIISHFHLDHCGALPYFSEVVGYDGPIYMTYPTKAICPVLLEDYRKVAVD------------- 113 (501)
T ss_pred ----------cccceeEEEEeeecccccccccchHhhhCCCCceEEecchhhhchHHHHHHHHHhcc-------------
Confidence 1357999999999 999999999999999999999999999999999998665431
Q ss_pred cchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhhceeeccCCeEEeCCCEEEEEEecCCCCccEEEEEEeC
Q 009999 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGA 238 (520)
Q Consensus 159 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~~~y~~~~~l~~~~~i~~~~aGH~lGs~~~~I~~~ 238 (520)
++|. ..++. .+|+.+|+.++..+...|.+.++.++.|+++.|||.+|+++|.|..+
T Consensus 114 ---------------------~kGe--~n~FT-~q~I~nCMKKVv~i~l~qt~~vD~dl~IrayYAGHVLGAaMf~ikvG 169 (501)
T KOG1136|consen 114 ---------------------RKGE--SNFFT-TQDIKNCMKKVVAIDLHQTIQVDEDLQIRAYYAGHVLGAAMFYIKVG 169 (501)
T ss_pred ---------------------ccCc--cccee-HHHHHHHHhheeEeeehheEEecccceeeeeecccccceeEEEEEec
Confidence 1231 01111 79999999999999999999999899999999999999999999999
Q ss_pred CeEEEEecCCCCC--CCCCCccccccCCCCCEEEEcCCCCCCCcccCCCCccccCCCchhHhhhccCCCchhHHHHHHHH
Q 009999 239 KGNIAYISGSNFA--SGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLA 316 (520)
Q Consensus 239 ~~~i~Y~sgD~~~--~~~~~~~~~~~~~~~DvLI~~~~~~~~~~~~~~~estyg~~~~~~~~~~~~~~~~~~~~e~~~l~ 316 (520)
+.+|+| |||++. .+|+-...... -..|+||. ||||+..... ++. .+|+
T Consensus 170 d~svvY-TGDYnmTpDrHLGaA~id~-~rpdlLIs--------------ESTYattiRd---------skr-~rER---- 219 (501)
T KOG1136|consen 170 DQSVVY-TGDYNMTPDRHLGAAWIDK-CRPDLLIS--------------ESTYATTIRD---------SKR-CRER---- 219 (501)
T ss_pred ceeEEE-ecCccCCcccccchhhhcc-ccCceEEe--------------eccceeeecc---------ccc-hhHH----
Confidence 999999 999965 34443322233 36799999 9999887553 111 1333
Q ss_pred HHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhCCCceeEEEEcchHHHHHHHHHHhHHHHHHHHHhhhccCCC
Q 009999 317 FICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDP 396 (520)
Q Consensus 317 ~l~~~I~~tl~~gG~VLIP~~~~Gr~qEll~~L~~~~~~~~l~~pI~~~s~~a~~~~~~~~~~~e~l~~~~~~~~~~~~~ 396 (520)
+|++.|.+++.+||+||||+|++||+||+..+|+.+|++.++.+|||+.++++.++..+|+.+..|.++..++++.. .|
T Consensus 220 dFLk~VhecVa~GGkvlIPvFALGRAQElCiLLd~YWERm~lk~Piyfs~Glte~an~yyk~fiswtn~~v~k~~~~-rN 298 (501)
T KOG1136|consen 220 DFLKKVHECVARGGKVLIPVFALGRAQELCILLDDYWERMNLKVPIYFSSGLTEKANMYYKMFISWTNENVKKKFVE-RN 298 (501)
T ss_pred HHHHHHHHHHhcCCeEEEEeeecchHHHHHHHHHHHHHhhccCCCccccccccchhchHhhhhhhhcccchhhhhcc-CC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999988776543 45
Q ss_pred CC--cceeeeeccccccccccCChhhhccCCCCEEEEecCCCCCcchHHHHHHHHcCCCCCceeecCCcchhhc------
Q 009999 397 LF--AHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELA------ 468 (520)
Q Consensus 397 pf--~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~Vv~as~~~l~~G~s~~~l~~~~~~~~n~iil~~~~~~~~~------ 468 (520)
+| +|.+-++. .....++|+|+|||+|||.+|.|+..|++|++||.|.+|++||+-...+
T Consensus 299 mfdfkhiKpfd~-------------~~~~~pGp~VlFatPGMLhaG~SLkvFK~W~~~~~NlvimPGYcV~GTvG~kvl~ 365 (501)
T KOG1136|consen 299 MFDFKHIKPFDR-------------SYIEAPGPMVLFATPGMLHAGFSLKVFKKWCPDPLNLVIMPGYCVAGTVGHKVLN 365 (501)
T ss_pred ccccccCChhhh-------------hhhcCCCCEEEEcCCcccccccchHHHHhhCCCccceEeecCceeccchhhhhhC
Confidence 55 44332211 2346789999999999999999999999999999999999998754322
Q ss_pred -------cCCCceeeeEEEEecccCCCCHHHHHHhhhhcCCCCceeEeeec
Q 009999 469 -------VLPFKPISMKASESSTLTKDTATEVSSVSRGMEDSCQFFRCYFI 512 (520)
Q Consensus 469 -------~~~~~~v~~~v~~~~~s~Had~~~l~~~i~~~~p~~~~~~~~~~ 512 (520)
.+....++++|++..||+|||..+++++++++.|++| .-+||
T Consensus 366 G~~kvei~~~~~eirl~V~~maFSaHaDAkGIm~li~~csPknV--mlVHG 414 (501)
T KOG1136|consen 366 GATKVEIYGTKVEIRLKVEYMAFSAHADAKGIMQLIKQCSPKNV--MLVHG 414 (501)
T ss_pred CccEEEEeeeEEEEEEEEEEeeeccccCchhHHHHHHhcCcceE--EEEec
Confidence 2344578999999999999999999999999999955 55665
No 4
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=100.00 E-value=1e-65 Score=557.77 Aligned_cols=395 Identities=18% Similarity=0.223 Sum_probs=318.5
Q ss_pred CeEEEcCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccccccccccCCCCcccccccccc
Q 009999 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (520)
Q Consensus 1 mkl~~lGg~~~~~~~sc~ll~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 80 (520)
|+|++|||+ +++|+||++|+.++.+||||||+..... .. ...|+
T Consensus 175 m~i~~LGg~-~eVG~Sc~Ll~~~~~~ILIDcG~~~~~~--------~~---------------------------~~~p~ 218 (630)
T TIGR03675 175 VRVTALGGF-REVGRSALLLSTPESRILLDCGVNVGAN--------GD---------------------------NAYPY 218 (630)
T ss_pred EEEEEEecC-CccCCCEEEEEECCCEEEEECCCCcccc--------ch---------------------------hhccc
Confidence 789999999 8999999999999999999999885410 00 11122
Q ss_pred cccccccccccCCcccEEEecCC--CCCCchhhhhcccCCceeEEEeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 009999 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (520)
Q Consensus 81 ~~~~~~~~~~~~~~id~IlISH~--DH~g~LP~L~~~~~~~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~ 158 (520)
+.. ..++..+||+|||||+ ||+|+||+|.+ .++++|||||++|+++++.++.|+++++..
T Consensus 219 l~~----~~~~~~~IDaVlITHaH~DHiG~LP~L~k-~g~~gpIY~T~pT~~l~~~ll~D~~~i~~~------------- 280 (630)
T TIGR03675 219 LDV----PEFQLDELDAVVITHAHLDHSGLVPLLFK-YGYDGPVYCTPPTRDLMTLLQLDYIDVAQR------------- 280 (630)
T ss_pred ccc----cCCCHHHCcEEEECCCCHHHHhhHHHHHH-hCCCCceeecHHHHHHHHHHHHHHHHHHHh-------------
Confidence 111 1124678999999999 99999999987 688999999999999999999998765431
Q ss_pred cchhhhHhhhchhhhhhhhccCCCCCCCCCCch-HHHHHHHHhhceeeccCCeEEeCCCEEEEEEecCCCCccEEEEEEe
Q 009999 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPC-IAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISG 237 (520)
Q Consensus 159 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dv~~~~~~i~~~~y~~~~~l~~~~~i~~~~aGH~lGs~~~~I~~ 237 (520)
.+. . .++ .+|++.++.++.+++|++++++.++++|+++++||++||++|.+..
T Consensus 281 ----------------------~g~-~---~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~AGHilGsa~~~~~i 334 (630)
T TIGR03675 281 ----------------------EGK-K---PPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNAGHILGSAIAHLHI 334 (630)
T ss_pred ----------------------cCC-C---CCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEecCccccCceEEEEEE
Confidence 010 1 134 7899999999999999999999778999999999999999998875
Q ss_pred C--CeEEEEecCCCCCCCCCCcccc-ccCCCCCEEEEcCCCCCCCcccCCCCccccCCC--chhHhhhccCCCchhHHHH
Q 009999 238 A--KGNIAYISGSNFASGHAMDFDY-RAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNN--NWEELMNSLSNYDESVEEM 312 (520)
Q Consensus 238 ~--~~~i~Y~sgD~~~~~~~~~~~~-~~~~~~DvLI~~~~~~~~~~~~~~~estyg~~~--~~~~~~~~~~~~~~~~~e~ 312 (520)
+ +++|+| |||++.......... ....++|+||+ |||||++. +. +++
T Consensus 335 ~dg~~~IvY-TGD~~~~~~~ll~~a~~~~~~vD~LI~--------------ESTYg~~~~~~~---------~r~----- 385 (630)
T TIGR03675 335 GDGLYNIVY-TGDFKYEKTRLLDPAVNKFPRVETLIM--------------ESTYGGRDDYQP---------SRE----- 385 (630)
T ss_pred CCCCEEEEE-eCCCCCCCCcCccchhhcCCCCCEEEE--------------eCccCCCCCCCC---------CHH-----
Confidence 3 469999 999976433221111 23457999999 99999976 43 222
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhCCC-ceeEEEEcchHHHHHHHHHHhHHHHHHHHHhhh
Q 009999 313 EKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKL 391 (520)
Q Consensus 313 ~~l~~l~~~I~~tl~~gG~VLIP~~~~Gr~qEll~~L~~~~~~~~l-~~pI~~~s~~a~~~~~~~~~~~e~l~~~~~~~~ 391 (520)
+..++|++.|.+++++||+||||+|++||+|||+.+|+.+|+++.+ ++|||++| |+.+++++|..++|||++..++.+
T Consensus 386 ~~e~~l~~~I~~tl~~gG~VLIP~favGR~QEll~~L~~~~~~g~lp~~pIy~dg-~~~~~t~i~~~~~e~l~~~~~~~i 464 (630)
T TIGR03675 386 EAEKELIKVVNETIKRGGKVLIPVFAVGRAQEVMLVLEEAMRKGLIPEVPVYLDG-MIWEATAIHTAYPEYLNKELRERI 464 (630)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEechhHHHHHHHHHHHHHHHhCCCCCCcEEEEc-hHHHHHHHHHHhHHHhCHHHHHHH
Confidence 2235678999999999999999999999999999999999998887 79999996 899999999999999999887766
Q ss_pred c-cCCCCCc--ceeeeeccccccccccCChhhhccCCCCEEEEecCCCCCcchHHHHHHHHcCCCCCceeecCCcchhhc
Q 009999 392 F-SGDPLFA--HVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELA 468 (520)
Q Consensus 392 ~-~~~~pf~--~~~~~~~~~l~~~~~~~~~~~~~~~~~p~Vv~as~~~l~~G~s~~~l~~~~~~~~n~iil~~~~~~~~~ 468 (520)
+ .+.+||. ++..+++ .++++......+||||||+||||++|++++||+.|++|++|+|+|+||+.+.+.
T Consensus 465 ~~~~~npf~~~~~~~v~~--------~~~~~~i~~~~~p~VIiatsGMl~gG~~~~~l~~l~~d~kn~IifvGyqa~gTl 536 (630)
T TIGR03675 465 FHEGENPFLSEIFVRVEG--------SDERREIIESDEPAIILATSGMLNGGPVVEYLKLLAPDPRNSLVFVGYQAEGTL 536 (630)
T ss_pred hhcCCCcccCCceEEeCC--------HHHHHHHhcCCCCEEEEECCCCCCcchHHHHHHHHcCCCCCeEEEeCCCCCCch
Confidence 5 4678884 4444332 222233445689999999999999999999999999999999999998865332
Q ss_pred -------------cC----CCceeeeEEEEec-ccCCCCHHHHHHhhhhcCCCCceeEeeecc
Q 009999 469 -------------VL----PFKPISMKASESS-TLTKDTATEVSSVSRGMEDSCQFFRCYFIL 513 (520)
Q Consensus 469 -------------~~----~~~~v~~~v~~~~-~s~Had~~~l~~~i~~~~p~~~~~~~~~~~ 513 (520)
.+ ...+++|+|+.++ ||+|||++||++|+++++|+...|+++||.
T Consensus 537 Gr~l~~g~~~i~i~g~~~~~~i~v~~~V~~~~gfSaHaD~~~L~~~v~~~~p~p~~v~lvHGe 599 (630)
T TIGR03675 537 GRRIQSGWREIPLTDEGKTETIKINMEVETVEGFSGHSDRRQLMNYVRRMQPKPEKILLNHGE 599 (630)
T ss_pred HHHHhcCCcEEEecCCCCceEEEEEEEEEEeCCccccCCHHHHHHHHHhcCCCCCEEEEEcCC
Confidence 12 3357899999996 999999999999999998866688999997
No 5
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=7.2e-61 Score=483.17 Aligned_cols=386 Identities=20% Similarity=0.271 Sum_probs=325.3
Q ss_pred eEEEcCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccccccccccCCCCccccccccccc
Q 009999 2 KFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWY 81 (520)
Q Consensus 2 kl~~lGg~~~~~~~sc~ll~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~ 81 (520)
+|++||+| +++|+||++++++|.+||+|||.+... +| + .++|+|
T Consensus 15 ~~~pLGag-~EVGRSC~ile~kGk~iMld~gvhpay--------sg--------------------------~-aslpf~ 58 (668)
T KOG1137|consen 15 KFTPLGAG-NEVGRSCHILEYKGKTIMLDCGVHPAY--------SG--------------------------M-ASLPFY 58 (668)
T ss_pred EEEECCCC-cccCceEEEEEecCeEEEeccccCccc--------cc--------------------------c-ccccch
Confidence 58999999 999999999999999999999999442 23 2 567777
Q ss_pred ccccccccccCCcccEEEecCC--CCCCchhhhhcccCCceeEEEeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcc
Q 009999 82 KTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQ 159 (520)
Q Consensus 82 ~~~~~~~~~~~~~id~IlISH~--DH~g~LP~L~~~~~~~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~ 159 (520)
. .+|.+.||..+|||+ ||+++|||+++...|++.+|||.+|+++.+.++.|+.++...
T Consensus 59 d------~vd~s~id~llIthFhldh~aslp~~~qkTsf~grvfmth~TkAi~kwllsdyvrvs~~-------------- 118 (668)
T KOG1137|consen 59 D------EVDLSAIDPLLITHFHLDHAASLPFTLQKTSFIGRVFMTHPTKAIYKWLLSDYVRVSNR-------------- 118 (668)
T ss_pred h------hcccccccHHHHhhhhhhhcccccceeeeccccceeEEecchHHHHHhhhhcceEeeec--------------
Confidence 4 468999999999999 999999999998999999999999999999999998654321
Q ss_pred chhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhhceeeccCCeEEeCCCEEEEEEecCCCCccEEEEEEeCC
Q 009999 160 WMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAK 239 (520)
Q Consensus 160 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~~~y~~~~~l~~~~~i~~~~aGH~lGs~~~~I~~~~ 239 (520)
+....-|. ..|+.++++++..++|.+.+++. |+++.++.+||++|+|+|.++..+
T Consensus 119 ----------------------s~~~~Ly~--e~dl~~s~dKie~idfhe~~ev~-gIkf~p~~aGhVlgacMf~veiag 173 (668)
T KOG1137|consen 119 ----------------------SGDDRLYT--EGDLMESMDKIETIDFHETVEVN-GIKFWPYHAGHVLGACMFMVEIAG 173 (668)
T ss_pred ----------------------cCcccccc--chhHHHhhhhheeeeeccccccC-CeEEEeeccchhhhheeeeeeece
Confidence 10000111 78889999999999999999995 899999999999999999999999
Q ss_pred eEEEEecCCCCCC--CCCCccccccCCCCCEEEEcCCCCCCCcccCCCCccccCCCchhHhhhccCCCchhHHHHHHHHH
Q 009999 240 GNIAYISGSNFAS--GHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAF 317 (520)
Q Consensus 240 ~~i~Y~sgD~~~~--~~~~~~~~~~~~~~DvLI~~~~~~~~~~~~~~~estyg~~~~~~~~~~~~~~~~~~~~e~~~l~~ 317 (520)
-+|+| |||+.+. +|.... .-+..+.|++|. |||||-..|. +|. +|.++
T Consensus 174 v~lLy-TGd~sreeDrhl~aa-e~P~~~~dvli~--------------estygv~~h~---------~r~-----~re~r 223 (668)
T KOG1137|consen 174 VRLLY-TGDYSREEDRHLIAA-EMPPTGPDVLIT--------------ESTYGVQIHE---------PRE-----EREGR 223 (668)
T ss_pred EEEEe-ccccchhhcccccch-hCCCCCccEEEE--------------EeeeeEEecC---------chH-----Hhhhh
Confidence 99999 9999874 343322 124457899999 9999998886 332 34467
Q ss_pred HHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhCC-C-ceeEEEEcchHHHHHHHHHHhHHHHHHHHHhhhccCC
Q 009999 318 ICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSS-L-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGD 395 (520)
Q Consensus 318 l~~~I~~tl~~gG~VLIP~~~~Gr~qEll~~L~~~~~~~~-l-~~pI~~~s~~a~~~~~~~~~~~e~l~~~~~~~~~~~~ 395 (520)
|.+.|..++.+||+||+|+||+||+||||.+|..+|...- + ++|||+.|++|++++..|+++..-|++.+++... ..
T Consensus 224 lt~vIh~~v~rGGR~L~PvFAlgrAqELllildeyw~~h~~l~~iPiyyaSslakkcm~vfQtyv~~mnd~Irk~~~-~~ 302 (668)
T KOG1137|consen 224 LTWVIHSTVPRGGRVLIPVFALGRAQELLLILDEYWGNHVDLRDIPIYYASSLAKKCMGVFQTYVNMMNDRIRKQSA-LR 302 (668)
T ss_pred hhhhHHhhccCCCceEeeeeecchHHHHHHHHHHHhhcchhhhcCceeehhhHHHhhhhhHheehhhhhhhhHHhhc-cC
Confidence 8999999999999999999999999999999999999873 3 7999999999999999999999999999887653 37
Q ss_pred CCC--cceeeeeccccccccccCChhhhccCCCCEEEEecCCCCCcchHHHHHHHHcCCCCCceeecCCcch--------
Q 009999 396 PLF--AHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDA-------- 465 (520)
Q Consensus 396 ~pf--~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~Vv~as~~~l~~G~s~~~l~~~~~~~~n~iil~~~~~~-------- 465 (520)
||| +|+..+++ .+ ....-+|||+.|++|||..|.|+++|++|++|++|++|++||+-.
T Consensus 303 Npfifk~vs~L~~--------~D----~f~D~gP~vv~aspgmlqsglSRelfe~wcsD~kN~vlipGy~Vegtlak~il 370 (668)
T KOG1137|consen 303 NPFIFKHVSILRT--------GD----WFDDEGPSVVMASPGMLQSGLSRELFERWCSDSKNAVLIPGYCVEGTLAKDIL 370 (668)
T ss_pred CceEeeccccccc--------cc----cccccCCceeEeCchHhhhhhhHHHHHHhCCCCCCcEEeccceechhHHHHHh
Confidence 786 66665554 22 134578999999999999999999999999999999999998733
Q ss_pred ---hhc---cCCCceeeeEEEEecccCCCCHHHHHHhhhhcCCCCceeEeeecc
Q 009999 466 ---ELA---VLPFKPISMKASESSTLTKDTATEVSSVSRGMEDSCQFFRCYFIL 513 (520)
Q Consensus 466 ---~~~---~~~~~~v~~~v~~~~~s~Had~~~l~~~i~~~~p~~~~~~~~~~~ 513 (520)
.++ -++..|.+|+|.+++||+|.|+.+-.++|+.++|+ .++-+||-
T Consensus 371 ~eP~eI~a~~G~klp~~m~V~~isFaAhvdy~q~s~fi~~i~~~--~lilVHGE 422 (668)
T KOG1137|consen 371 SEPKEIMAMNGRKLPLRMQVEYISFAAHVDYLQNSEFIADITPP--HLILVHGE 422 (668)
T ss_pred cCchhhhcccCCcccccceEEEEEeeechhhhhhHHHHHHhCCC--eEEEEecc
Confidence 222 14556899999999999999999999999999999 66888883
No 6
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-56 Score=466.57 Aligned_cols=380 Identities=17% Similarity=0.189 Sum_probs=309.7
Q ss_pred CeEEEcCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccccccccccCCCCcccccccccc
Q 009999 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (520)
Q Consensus 1 mkl~~lGg~~~~~~~sc~ll~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 80 (520)
|++.++|++ +++|++|++|+.++.+||+|||+.... .. +..|+
T Consensus 1 ~~~~~~g~~-~evg~s~~~l~~~~~~il~D~G~~~~~--------~~----------------------------~~~p~ 43 (427)
T COG1236 1 MTLRFLGAA-REVGRSCVLLETGGTRILLDCGLFPGD--------PS----------------------------PERPL 43 (427)
T ss_pred Cceeccccc-CCcCcEEEEEEECCceEEEECCCCcCc--------CC----------------------------ccCCC
Confidence 789999999 899999999999999999999999542 00 01222
Q ss_pred cccccccccccCCcccEEEecCC--CCCCchhhhhcccCCceeEEEeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 009999 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (520)
Q Consensus 81 ~~~~~~~~~~~~~~id~IlISH~--DH~g~LP~L~~~~~~~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~ 158 (520)
.. ..+ ++|+++|||+ ||+|+||+++. .++++|||||.+|..+++.++.|.++.+..
T Consensus 44 ~~------~~~--~vDavllTHaHlDH~g~lp~l~~-~~~~~~v~aT~~T~~l~~~~l~d~~~~~~~------------- 101 (427)
T COG1236 44 LP------PFP--KVDAVLLTHAHLDHIGALPYLVR-NGFEGPVYATPPTAALLKVLLGDSLKLAEG------------- 101 (427)
T ss_pred CC------CCC--CcCEEEeccCchhhhcccHHHHH-hccCCceeeccCHHHHHHHHHHHHHhhhcC-------------
Confidence 10 112 7999999999 99999999998 457899999999999999999999876531
Q ss_pred cchhhhHhhhchhhhhhhhccCCCCCCCCCCch-HHHHHHHHhhceeeccCCeEEeCCCEEEEEEecCCCCccEEEEEEe
Q 009999 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPC-IAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISG 237 (520)
Q Consensus 159 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dv~~~~~~i~~~~y~~~~~l~~~~~i~~~~aGH~lGs~~~~I~~ 237 (520)
. ...++ ..|++.++.++++++|++++++. +++|++++|||++||++|.++.
T Consensus 102 --------------------------~-~~~~~~~~d~~~~~~~~~~~~yg~~~~v~-~~~v~~~~AGHilGsa~~~le~ 153 (427)
T COG1236 102 --------------------------P-DKPPYSEEDVERVPDLIRPLPYGEPVEVG-GVKVTFYNAGHILGSAAILLEV 153 (427)
T ss_pred --------------------------C-CCCCCchhHHHhhHhhEEEecCCCceEee-eEEEEEecCCCccceeEEEEEe
Confidence 0 01144 89999999999999999999996 6999999999999999999999
Q ss_pred CCeEEEEecCCCCCCCCCCccccccCCCCCEEEEcCCCCCCCcccCCCCccccCCCchhHhhhccCCCchhHHHHHHHHH
Q 009999 238 AKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAF 317 (520)
Q Consensus 238 ~~~~i~Y~sgD~~~~~~~~~~~~~~~~~~DvLI~~~~~~~~~~~~~~~estyg~~~~~~~~~~~~~~~~~~~~e~~~l~~ 317 (520)
++.+|+| |||++...+......+....+|+||+ |||||+..|. +++.. + +.
T Consensus 154 ~~~~ily-tGD~~~~~~~l~~~a~~~~~~DvLI~--------------EsTYg~~~~~---------~r~~~---e--~~ 204 (427)
T COG1236 154 DGGRILY-TGDVKRRKDRLLNGAELPPCIDVLIV--------------ESTYGDRLHP---------NRDEV---E--RR 204 (427)
T ss_pred CCceEEE-EeccCCCcCCCCCccccCCCCcEEEE--------------ecccCCccCC---------CHHHH---H--HH
Confidence 9999999 99998754433322333333799999 9999998885 44333 2 33
Q ss_pred HHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhCCCceeEEEEcchHHHHHHHHHHhHHHHHHHHHhhhccCCCC
Q 009999 318 ICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPL 397 (520)
Q Consensus 318 l~~~I~~tl~~gG~VLIP~~~~Gr~qEll~~L~~~~~~~~l~~pI~~~s~~a~~~~~~~~~~~e~l~~~~~~~~~~~~~p 397 (520)
|.+.|.+++.+||+||||+|++||+||||.+|+.++.++ ++|||++|++++.+..+++.+.+|+.+.....+...
T Consensus 205 f~~~v~~~l~~GG~vlipafa~graQEll~~L~~~~~~~--~~pi~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--- 279 (427)
T COG1236 205 FIESVKAALERGGTVLIPAFALGRAQELLLILRELGFAG--DYPIYVDGPIARVALAYAKYPIGLDLPDLLKVAESR--- 279 (427)
T ss_pred HHHHHHHHHhCCCEEEEecccccHHHHHHHHHHHHhccC--CCCeEeccHHHHHHHHHHHhchhccChHHHHHHHhh---
Confidence 789999999999999999999999999999999998876 899999999999999999999999988877665432
Q ss_pred CcceeeeeccccccccccCChhhhccCCCCEEEEecCCCCCcchHHHHHHHHcCCCCCceeecCCcchhhc---------
Q 009999 398 FAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELA--------- 468 (520)
Q Consensus 398 f~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~Vv~as~~~l~~G~s~~~l~~~~~~~~n~iil~~~~~~~~~--------- 468 (520)
|.. ++. ...........+|+||++++||+.+|+++.+++.|..+++|.++|++|......
T Consensus 280 ~~~---v~~--------~~~~~~~~~~~~~~vi~a~~gm~~~g~~~~~~~~~~~~~~n~~~l~~~~~~~t~gr~~~~~~~ 348 (427)
T COG1236 280 FRF---VES--------RRNSMREGIDKGPAVVLAAPGMLKGGRSRYYLKHLLSDEKNWVLLPGYQAEGTLGRVLLEGGT 348 (427)
T ss_pred ccc---ccc--------hhhhhhhhccCCceEEEEecccccCCcHHHHHHHHhcCCcceEEEcccccCCcchhHHhcCCc
Confidence 222 222 111123456789999999999999999999999999999999999987654321
Q ss_pred ----cCCCceeeeEEEEecccCCCCHHHHHHhhhhcCCCCceeEeeeccc
Q 009999 469 ----VLPFKPISMKASESSTLTKDTATEVSSVSRGMEDSCQFFRCYFILS 514 (520)
Q Consensus 469 ----~~~~~~v~~~v~~~~~s~Had~~~l~~~i~~~~p~~~~~~~~~~~~ 514 (520)
.+...+++++|+.+.||+|+|+.+|+++|+...|+ .|+.+|+.-
T Consensus 349 ~~~~~~~~i~~~~~ve~~~~s~Had~~~l~~~i~~~~~~--~v~~~Hg~~ 396 (427)
T COG1236 349 SVHIKGIEIKVKARVEELDFSAHADGDELLEFIKDISPP--KVVLVHGEP 396 (427)
T ss_pred EEeecceeecccceEEEeccccccCcHHHHHHHhcCCCc--eEEEEeCCc
Confidence 12345678999999999999999999999999988 567777753
No 7
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=6.9e-49 Score=405.68 Aligned_cols=337 Identities=22% Similarity=0.379 Sum_probs=272.8
Q ss_pred eEEEcCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccccccccccCCCCccccccccccc
Q 009999 2 KFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWY 81 (520)
Q Consensus 2 kl~~lGg~~~~~~~sc~ll~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~ 81 (520)
+++.+.|. .+-+..||+|+++|.+|||||||+...-++ .+ + ++
T Consensus 3 ~l~~~~g~-~de~~~cyllqiD~~~iLiDcGwd~~f~~~--------------------------------~i-~--~l- 45 (764)
T KOG1135|consen 3 KLTTLCGA-TDEGPLCYLLQIDGVRILIDCGWDESFDMS--------------------------------MI-K--EL- 45 (764)
T ss_pred eEEeeccc-cCCCcceEEEEEcCeEEEEeCCCcchhccc--------------------------------hh-h--hh-
Confidence 45555565 355999999999999999999999652110 01 1 11
Q ss_pred ccccccccccCCcccEEEecCC--CCCCchhhhhcccCCceeEEEeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcc
Q 009999 82 KTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQ 159 (520)
Q Consensus 82 ~~~~~~~~~~~~~id~IlISH~--DH~g~LP~L~~~~~~~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~ 159 (520)
.-.+.+|||||+||+ -|+|||||++..+|+++|||+|.|++.+|+..+.|.++.+.+
T Consensus 46 -------~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~VYAT~PV~~mG~m~myD~~~S~~~-------------- 104 (764)
T KOG1135|consen 46 -------KPVIPTIDAILLSHPDILHLGALPYAVGKLGLNAPVYATLPVIKMGQMFMYDLYRSHGN-------------- 104 (764)
T ss_pred -------hcccccccEEEecCCChHHhccchhhHhhCCccceEEEecchhhhhhhhHHHHHhcccc--------------
Confidence 114678999999999 599999999998999999999999999999999998643210
Q ss_pred chhhhHhhhchhhhhhhhccCCCCCCCCCCch-HHHHHHHHhhceeeccCCeEEeC---CCEEEEEEecCCCCccEEEEE
Q 009999 160 WMKWEELELLPSALRKIALGEDGSELGGGCPC-IAHVKDCISKVQTLRFGEEACYN---GILIIKAFSSGLDIGACNWII 235 (520)
Q Consensus 160 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dv~~~~~~i~~~~y~~~~~l~---~~~~i~~~~aGH~lGs~~~~I 235 (520)
..++.-+ .+||+.+|++|..++|+|++.+. .|++|++++|||++|++.|+|
T Consensus 105 -------------------------~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynAGhmiGGsIWkI 159 (764)
T KOG1135|consen 105 -------------------------VGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNAGHMIGGSIWKI 159 (764)
T ss_pred -------------------------cccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecCCCccCceEEEE
Confidence 1122233 89999999999999999999986 379999999999999999999
Q ss_pred EeCCeEEEEecCCCCC--CCCCCccccccCCCCCEEEEcCCCCCCCcccCCCCccccCCCchhHhhhccCCCchhHHHHH
Q 009999 236 SGAKGNIAYISGSNFA--SGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEME 313 (520)
Q Consensus 236 ~~~~~~i~Y~sgD~~~--~~~~~~~~~~~~~~~DvLI~~~~~~~~~~~~~~~estyg~~~~~~~~~~~~~~~~~~~~e~~ 313 (520)
...+++|+| .-|++. ..|+.....+.+..+.+||+++. .++|... +.++
T Consensus 160 ~k~~E~ivY-avd~NHkKe~HLNG~~l~~l~RPsllITda~-----------~~~~~~~-----------------~rkk 210 (764)
T KOG1135|consen 160 SKVGEDIVY-AVDFNHKKERHLNGCSLSGLNRPSLLITDAN-----------HALYSQP-----------------RRKK 210 (764)
T ss_pred EecCceEEE-EEecccchhcccCCccccccCCcceEEeccc-----------ccccccc-----------------chhH
Confidence 988899999 666643 45665555566778888998532 2222221 1233
Q ss_pred HHHHHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhC--CC-ceeEEEEcchHHHHHHHHHHhHHHHHHHHHhh
Q 009999 314 KLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECS--SL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEK 390 (520)
Q Consensus 314 ~l~~l~~~I~~tl~~gG~VLIP~~~~Gr~qEll~~L~~~~~~~--~l-~~pI~~~s~~a~~~~~~~~~~~e~l~~~~~~~ 390 (520)
|-++|.+.|.++|++||+|||||+..||++||+.+|+++|.+. ++ ++||++.|+.+.++++|++.+.|||++...+.
T Consensus 211 RDe~f~d~v~~~L~~~G~VlipVDtAgRvLELa~iLdqlws~~~~gl~~~pl~~Ls~vs~~tveyAKSmiEWmsdkl~k~ 290 (764)
T KOG1135|consen 211 RDEQFLDTVLKTLRSGGNVLIPVDTAGRVLELALILDQLWSQSDAGLSQYPLAFLSYVSSRTVEYAKSMIEWMSDKLSKM 290 (764)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEecccHHHHHHHHHHHHHHhcccCCCcccceeeeeccchhHHHHHHHHHHHhhhHHHHh
Confidence 4467899999999999999999999999999999999999997 67 69999999999999999999999999999887
Q ss_pred hcc-CCCCC--cceeeeeccccccccccCChhhhccCCCCEEEEecCCCCCcchHHHHHHHHcCCCCCceeec
Q 009999 391 LFS-GDPLF--AHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLE 460 (520)
Q Consensus 391 ~~~-~~~pf--~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~Vv~as~~~l~~G~s~~~l~~~~~~~~n~iil~ 460 (520)
+.. ..||| .|.+++.+ . .+..+...+|+||+||...|+.|.++.+|-.|++|++|.|+||
T Consensus 291 fe~~r~NpFefrhi~l~~~--------~--~dlsr~p~gpkVVlas~~~lE~Gfsrd~fl~w~~d~~N~illt 353 (764)
T KOG1135|consen 291 FEEARNNPFEFRHITLCHS--------L--QDLSRVPPGPKVVLASVPDLECGFSRDLFLEWASDPRNLILLT 353 (764)
T ss_pred hhhccCCcceeeeeeeecC--------H--HHHhcCCCCCeEEEeeccchhcchhHHHHHHHhcCCcceEEEe
Confidence 764 56897 66666643 2 2345566779999999999999999999999999999999997
No 8
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=100.00 E-value=1.7e-33 Score=296.96 Aligned_cols=356 Identities=13% Similarity=0.073 Sum_probs=237.7
Q ss_pred CeEEEcCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccccccccccCCCCcccccccccc
Q 009999 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (520)
Q Consensus 1 mkl~~lGg~~~~~~~sc~ll~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 80 (520)
+++++|||. +++|+||++|+.++..||+|||..+.... ..+. +...||++.|.
T Consensus 1 ~~i~~lGG~-~eiG~n~~ll~~~~~~iliD~G~~~~~~~-----~~g~----------------~~~iPd~~~l~----- 53 (422)
T TIGR00649 1 VKIFALGGL-GEIGKNMYVVEIDDDVFIFDAGILFPEDA-----MLGV----------------DGVIPDFSYLQ----- 53 (422)
T ss_pred CEEEEccCC-CccCCeEEEEEECCeEEEEeCCCCCCccc-----ccCC----------------ccccCCHHHHH-----
Confidence 589999999 89999999999999999999998754200 0000 01122222221
Q ss_pred cccccccccccCCcccEEEecCC--CCCCchhhhhcccCCceeEEEeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 009999 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (520)
Q Consensus 81 ~~~~~~~~~~~~~~id~IlISH~--DH~g~LP~L~~~~~~~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~ 158 (520)
....++|+|||||+ ||++|||+|....+ ..|||+|+.|.++.+..+...
T Consensus 54 ---------~~~~~i~~I~iTH~H~DHiggl~~l~~~~~-~~~Vy~~~~t~~~l~~~~~~~------------------- 104 (422)
T TIGR00649 54 ---------ENQDKVKGIFITHGHEDHIGAVPYLFHTVG-FPPIYGTPLTIALIKSKIKEN------------------- 104 (422)
T ss_pred ---------hccccCCEEEECCCChHHhCcHHHHHHhCC-CCeEEeCHHHHHHHHHHHHhc-------------------
Confidence 12457999999999 99999999987322 369999999987654322210
Q ss_pred cchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhhceeeccCCeEEeCCCEEEEEEecCC-CCccEEEEEEe
Q 009999 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGL-DIGACNWIISG 237 (520)
Q Consensus 159 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~~~y~~~~~l~~~~~i~~~~aGH-~lGs~~~~I~~ 237 (520)
+. .. + ..++.+++++.++++++++|++++++| ++||++|+++.
T Consensus 105 -----------------------~~--~~--~---------~~~~~~~~~~~~~ig~~~~v~~~~~~H~~p~s~g~~i~~ 148 (422)
T TIGR00649 105 -----------------------KL--NV--R---------TDLLEIHEGEPIETGENHTIEFIRITHSIPDSVGFALHT 148 (422)
T ss_pred -----------------------CC--CC--C---------CceEEeCCCCEEEeCCceEEEEEECCCCCcceEEEEEEe
Confidence 00 00 0 136678889999995469999999999 46999999999
Q ss_pred CCeEEEEecCCCCCCCCCC---ccccc-----cCCCCCEEEEcCCCCCCCcccCCCCccccCCCchhHhhhccCCCchhH
Q 009999 238 AKGNIAYISGSNFASGHAM---DFDYR-----AIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESV 309 (520)
Q Consensus 238 ~~~~i~Y~sgD~~~~~~~~---~~~~~-----~~~~~DvLI~~~~~~~~~~~~~~~estyg~~~~~~~~~~~~~~~~~~~ 309 (520)
++++++| |||+....... ..+.. ..+++|+||+ |+||+..... .++
T Consensus 149 ~~~~ivy-tGD~~~~~~~~~~~~~d~~~l~~~~~~g~d~Li~--------------EsT~~~~~~~-------~~~---- 202 (422)
T TIGR00649 149 PLGYIVY-TGDFKFDNTPVIGEPPDLNRIAEYGKKGVLLLIS--------------DSTNVENPGF-------TPS---- 202 (422)
T ss_pred CCcEEEE-CCCcCCCCCccCCcccCHHHHHhhcccCeEEEEE--------------CCCCCCCCCC-------CCC----
Confidence 8899999 99996532221 11111 1257899999 8999864321 001
Q ss_pred HHHHHHHHHHHHHHHHH-hcCCeEEEecCC--hHHHHHHHHHHHHHHHhCCCceeEEEEcchHHHHHHHHHHhHHHHHHH
Q 009999 310 EEMEKLAFICSCAIDSV-KAGGSVLIPINR--VGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQ 386 (520)
Q Consensus 310 ~e~~~l~~l~~~I~~tl-~~gG~VLIP~~~--~Gr~qEll~~L~~~~~~~~l~~pI~~~s~~a~~~~~~~~~~~e~l~~~ 386 (520)
+. .+.+.+.+++ +.+|.|++++|+ .+|+|++++++..+ ..+|++++.++.++++++..+ +|+..
T Consensus 203 -e~----~~~~~i~~~~~~~~~~viv~~fa~~~~R~~~i~~~a~~~------~r~v~v~g~~~~~~~~~~~~~-g~~~~- 269 (422)
T TIGR00649 203 -EA----KVLEQLNDIFKNAKGRVIVATFASNIHRVQQLIQIARKQ------GRKFAVYGRSMEHLFGIARRL-GLIKN- 269 (422)
T ss_pred -HH----HHHHHHHHHHHhCCCEEEEEEccccHHHHHHHHHHHHHh------CCEEEEECccHHHHHHHHHHc-CCccC-
Confidence 11 1123344444 468999999999 89999999987543 468999988888888777543 22211
Q ss_pred HHhhhccCCCCCcceeeeeccccccccccCChhhhccCCCCEEEEecCCCCCcchHHHHHHHHcCCC--------CCcee
Q 009999 387 RQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDH--------NSLLV 458 (520)
Q Consensus 387 ~~~~~~~~~~pf~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~Vv~as~~~l~~G~s~~~l~~~~~~~--------~n~ii 458 (520)
+ ....+. ..+..+..++++||++|++ .+++ ..++.+++.++ .++||
T Consensus 270 -------~-----~~~~~~-----------~~~i~~~~~~~~vii~tg~--~g~~-~~~l~~~~~~~~~~i~l~~~d~vi 323 (422)
T TIGR00649 270 -------P-----HNNFIS-----------LKEVNNSPDENYLIITTGS--QGEP-YAALTRIANNEHEQIRIRKGDTVV 323 (422)
T ss_pred -------C-----ccceeC-----------HHHHhcCCcccEEEEEeCC--CCcH-HHHHHHHhCCCCCcEEeCCCCEEE
Confidence 0 000111 0112223357899999887 6666 67777888764 36777
Q ss_pred ec----CCcc-hh-hc-cC-CCceeeeEEEE-ecccCCCCHHHHHHhhhhcCCCCceeEeeecccc
Q 009999 459 LE----NEVD-AE-LA-VL-PFKPISMKASE-SSTLTKDTATEVSSVSRGMEDSCQFFRCYFILSL 515 (520)
Q Consensus 459 l~----~~~~-~~-~~-~~-~~~~v~~~v~~-~~~s~Had~~~l~~~i~~~~p~~~~~~~~~~~~~ 515 (520)
++ +|+. .. .. +. ....+.++++. +-+|+||+++||..+++.++|+ +|+.+|+..+
T Consensus 324 ~s~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~h~SgHa~~~dl~~~i~~~~Pk--~~ipvHge~~ 387 (422)
T TIGR00649 324 FSAPPIPGNENIAVSILLDIRLNEVGARVIKRIHVSGHASQEDHKLLLRLLKPK--YIIPVHGEYR 387 (422)
T ss_pred EECCCCCcHHHHHHHHHHHHHHHhcCCEEEeceEecCCCCHHHHHHHHHHhCCC--EEEecCCcHH
Confidence 74 2222 10 01 11 12345666654 7899999999999999999999 8899999743
No 9
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.93 E-value=9.3e-25 Score=231.74 Aligned_cols=356 Identities=13% Similarity=0.125 Sum_probs=223.0
Q ss_pred CeEEEcCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccccccccccCCCCcccccccccc
Q 009999 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (520)
Q Consensus 1 mkl~~lGg~~~~~~~sc~ll~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 80 (520)
|+|.+|||. +++|.+|+++++++..+++|||..+..- . ..--|...||.++|.+
T Consensus 9 i~i~~lGG~-~EiGkN~~vve~~~~i~i~D~G~~fp~~--------~-------------~~gvDliIPd~~yl~~---- 62 (555)
T COG0595 9 IKIFALGGV-GEIGKNMYVVEYGDDIIILDAGLKFPED--------D-------------LLGVDLIIPDFSYLEE---- 62 (555)
T ss_pred eEEEEecCh-hhhccceEEEEECCcEEEEECccccCcc--------c-------------cccccEEecChHHhhh----
Confidence 579999999 8999999999999999999999986531 0 0001445566666622
Q ss_pred cccccccccccCCcccEEEecCC--CCCCchhhhhcccCCceeEEEeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 009999 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (520)
Q Consensus 81 ~~~~~~~~~~~~~~id~IlISH~--DH~g~LP~L~~~~~~~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~ 158 (520)
+..+|++|||||+ ||+||+|||..... ..|||+|+.|..+.+.-+++.- .
T Consensus 63 ----------n~~kvkgI~lTHgHeDHIGaip~ll~~~~-~~piy~s~lt~~Li~~k~~~~~--------~--------- 114 (555)
T COG0595 63 ----------NKDKVKGIFLTHGHEDHIGALPYLLKQVL-FAPIYASPLTAALIKEKLKEHG--------L--------- 114 (555)
T ss_pred ----------ccccceEEEecCCchhhccchHHHHhcCC-cCceecCHhhHHHHHHHHHHhc--------c---------
Confidence 2348999999999 99999999998333 2899999999998776555310 0
Q ss_pred cchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhhceeeccCCeEEeCCCEEEEEEecCCC-CccEEEEEEe
Q 009999 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLD-IGACNWIISG 237 (520)
Q Consensus 159 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~~~y~~~~~l~~~~~i~~~~aGH~-lGs~~~~I~~ 237 (520)
...+ ..++.++.+..+++ +++.|+++++.|+ ++|+++.|++
T Consensus 115 --------------------------~~~~-----------~~~~ev~~~~~i~~-~~~~v~f~~vtHSIPds~g~~i~T 156 (555)
T COG0595 115 --------------------------FKNE-----------NELHEVKPGSEIKF-GSFEVEFFPVTHSIPDSLGIVIKT 156 (555)
T ss_pred --------------------------cccc-----------CceEEeCCCCeEEe-CcEEEEEEeecccCccceEEEEEC
Confidence 0011 35788899999999 5899999999995 5899999999
Q ss_pred CCeEEEEecCCCCCCCCCCc---cccc-----cCCCCCEEEEcCCCCCCCcccCCCCccccCCCchhHhhhccCCCchhH
Q 009999 238 AKGNIAYISGSNFASGHAMD---FDYR-----AIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESV 309 (520)
Q Consensus 238 ~~~~i~Y~sgD~~~~~~~~~---~~~~-----~~~~~DvLI~~~~~~~~~~~~~~~estyg~~~~~~~~~~~~~~~~~~~ 309 (520)
+...|+| |||+.....+.. .|.. --.++++||+ |||-...... .+++...
T Consensus 157 p~G~Iv~-TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~Lis--------------dsTna~~pg~-------t~SE~~v 214 (555)
T COG0595 157 PEGNIVY-TGDFKFDPTPVDGEPTDLARLAEIGKEGVLALIS--------------DSTNAENPGF-------TPSESEV 214 (555)
T ss_pred CCccEEE-eCCEEecCCcCCCCcCCHHHHHHhccCCcEEEEe--------------CCcccCCCCC-------CCCHHHH
Confidence 9999999 999965433322 2221 1136899999 6665542221 0111111
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEecCCh--HHHHHHHHHHHHHHHhCCCceeEEEEcchHHHHHHHHHHhHHHHHHHH
Q 009999 310 EEMEKLAFICSCAIDSVKAGGSVLIPINRV--GVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQR 387 (520)
Q Consensus 310 ~e~~~l~~l~~~I~~tl~~gG~VLIP~~~~--Gr~qEll~~L~~~~~~~~l~~pI~~~s~~a~~~~~~~~~~~e~l~~~~ 387 (520)
...+.+.+.+ ..|.|++-+|++ +|+|.++.+-... .-++.+.+-...+....+....-|-..
T Consensus 215 -----~~~l~~i~~~---a~grVIv~tfaSni~Ri~~i~~~A~~~------gR~vvv~GrSm~~~~~~a~~lg~~~~~-- 278 (555)
T COG0595 215 -----GENLEDIIRN---AKGRVIVTTFASNIERIQTIIDAAEKL------GRKVVVTGRSMERLIAIARRLGYLKLP-- 278 (555)
T ss_pred -----HHHHHHHHHh---CCCcEEEEEchhhHHHHHHHHHHHHHc------CCeEEEEcHhHHHHHHHHhhcccccCc--
Confidence 1112222332 378899999986 8999988876332 457777776556655555543322111
Q ss_pred HhhhccCCCCCcceeeeeccccccccccCChhhhccCCCCEEEEecCCCCCcchHHHHHHHHcCCCC--------Cceee
Q 009999 388 QEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHN--------SLLVL 459 (520)
Q Consensus 388 ~~~~~~~~~pf~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~Vv~as~~~l~~G~s~~~l~~~~~~~~--------n~iil 459 (520)
.+ .++.. .+.......--+++++... |.-...|.+++.++. .++||
T Consensus 279 -------~~-----~~i~~-----------~~~~~~~~~~~lii~TG~q---gep~aaL~r~a~~~h~~~~i~~gD~vIf 332 (555)
T COG0595 279 -------DE-----SFIEI-----------REVKRYPDEEVLIICTGSQ---GEPMAALSRMANGEHRYVKIKEGDTVIF 332 (555)
T ss_pred -------cc-----cccCH-----------HHhccccccceEEEEeCCC---CCchhhhhHhhcCCccceecCCCCeEEE
Confidence 11 11211 1122222233455555443 333334444433332 34555
Q ss_pred cCC-cchhhc-----cCCCceeeeEEE-----EecccCCCCHHHHHHhhhhcCCCCceeEeeeccc
Q 009999 460 ENE-VDAELA-----VLPFKPISMKAS-----ESSTLTKDTATEVSSVSRGMEDSCQFFRCYFILS 514 (520)
Q Consensus 460 ~~~-~~~~~~-----~~~~~~v~~~v~-----~~~~s~Had~~~l~~~i~~~~p~~~~~~~~~~~~ 514 (520)
... .+..+. +.......+++. .+-.|+|+.++|+..+++.++|+ |++=+|+.-
T Consensus 333 ss~~ipgne~~~~~~~n~l~~~g~~i~~~~~~~~hvSGHas~eel~~mi~~l~Pk--y~iPvHGey 396 (555)
T COG0595 333 SSSPIPGNEAAVYRLLNRLYKAGAKVITGGDKKVHVSGHASREELKLMINLLRPK--YLIPVHGEY 396 (555)
T ss_pred eccCcCCcHHHHHHHHHHHHhcCcEEeecccceeEecCCCChHHHHHHHHhhCCc--eecccCCCc
Confidence 311 111110 011112233333 34589999999999999999999 778777753
No 10
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=99.84 E-value=6.1e-21 Score=167.59 Aligned_cols=119 Identities=25% Similarity=0.402 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHhCCC--ceeEEEEcchHHHHHHHHHHhHHHHHHHHHhhhccCCC-CCcceeeeeccccccccccCCh
Q 009999 342 FLQLLEQIAIFMECSSL--KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDP-LFAHVKLIKEKKIHVFPAVHSP 418 (520)
Q Consensus 342 ~qEll~~L~~~~~~~~l--~~pI~~~s~~a~~~~~~~~~~~e~l~~~~~~~~~~~~~-pf~~~~~~~~~~l~~~~~~~~~ 418 (520)
+||||.+|+++|+++++ ++|||++|++|.+++++|+++.|||++..++++...+. ||.++..++. +.+.
T Consensus 1 ~qEll~~L~~~~~~~~~~~~~pI~~~s~~a~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 72 (126)
T PF10996_consen 1 AQELLLILDEYWKEGKLPRDVPIYVDSPMAAKVLEYYKSYPEWLSESIQRKFEDKEDNPFDNFKFVKS--------VDES 72 (126)
T ss_dssp HHHHHHHHHHHHCTTSSGTTSEEEEESTCHHHHHHHHHHCGGGS-HHHHHHHHTTSTTTTTTEEEEES--------HHHH
T ss_pred CHHHHHHHHHHHHhCCCCCCCcEEEEChHHHHHHHHHHHHHHHHCHHHHHHHHhcCCCCCCCeEEecc--------cccc
Confidence 69999999999999886 79999999999999999999999999998776654433 7888877754 3323
Q ss_pred hhhccCCCCEEEEecCCCCCcchHHHHHHHHcCCCCCceeecCCcchhhc
Q 009999 419 KLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELA 468 (520)
Q Consensus 419 ~~~~~~~~p~Vv~as~~~l~~G~s~~~l~~~~~~~~n~iil~~~~~~~~~ 468 (520)
+.+....+|+||||++|||++|+++++|++|++|++|+||||||+++.+.
T Consensus 73 ~~l~~~~~p~Vvias~gml~~G~s~~~l~~~~~d~~n~Ii~~gy~~~~T~ 122 (126)
T PF10996_consen 73 KELNALSGPKVVIASSGMLEGGRSRHYLKRLASDPRNTIIFTGYQAPGTL 122 (126)
T ss_dssp HHHHHSCSSEEEEESSTTSSSSHHHHHHHHHTTSTTSEEEESSS--TTSH
T ss_pred cccccCCCCeEEEeCCCCCCCCHHHHHHHHHcCCCCCeEEEecCCCCCCc
Confidence 33344569999999999999999999999999999999999999987653
No 11
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.72 E-value=3.9e-17 Score=160.62 Aligned_cols=159 Identities=18% Similarity=0.180 Sum_probs=110.6
Q ss_pred CeEEEcCCCCC------------------CC----CCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCcc
Q 009999 1 MKFTCLCQGGG------------------FN----FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSD 58 (520)
Q Consensus 1 mkl~~lGg~~~------------------~~----~~sc~ll~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~ 58 (520)
||+|+||.+++ .+ .++|++|+.++..||||||.... .
T Consensus 1 m~~~~lGs~~~~~~p~~~c~c~~c~~~~~~p~~~r~~~s~li~~~~~~iLiD~G~~~~--~------------------- 59 (250)
T PRK11244 1 MRLTLLGTGGAQGVPVFGCECAACARARRDPAYRRRPCSALIEFNGARTLIDAGLPDL--A------------------- 59 (250)
T ss_pred CEEEEEeccCCCCccCCCccchhhhhhhcCCCCCcceeEEEEEECCCEEEEECCChHH--h-------------------
Confidence 99999999855 22 36799999999999999995411 0
Q ss_pred ccccccccCCCCcccccccccccccccccccccCCcccEEEecCC--CCCCchhhhhcccCCceeEEEeHHHHHHHHHHH
Q 009999 59 SQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMM 136 (520)
Q Consensus 59 ~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~id~IlISH~--DH~g~LP~L~~~~~~~~~Iy~T~~T~~l~~~~l 136 (520)
. .++..+||+|||||. ||++||+.+....+...+||++..+..+.
T Consensus 60 -----------------~------------~~~~~~i~~i~iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~~~~~---- 106 (250)
T PRK11244 60 -----------------E------------RFPPGSLQQILLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDPEGCD---- 106 (250)
T ss_pred -----------------h------------cCCcccCCEEEEccCchhhhccHHHHHhhcCCceeEEeCCchhhHH----
Confidence 0 013467999999999 99999987754223457899998765322
Q ss_pred HHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhhc-eeeccCCeEEeCC
Q 009999 137 EELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKV-QTLRFGEEACYNG 215 (520)
Q Consensus 137 ~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i-~~~~y~~~~~l~~ 215 (520)
+..+. + + . ..+ ..+..++.+++ +
T Consensus 107 -~~~~~---------------------------~-----------~-----~-----------~~~~~~l~~~~~~~~-~ 130 (250)
T PRK11244 107 -DLFKH---------------------------P-----------G-----I-----------LDFSHPLEPFEPFDL-G 130 (250)
T ss_pred -HHhcC---------------------------c-----------c-----c-----------cccccccCCCCCeeE-C
Confidence 11100 0 0 0 011 23455678888 4
Q ss_pred CEEEEEEecCCCCccEEEEEEeCCeEEEEecCCCCCCCCCCccccccCCCCCEEEE
Q 009999 216 ILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILY 271 (520)
Q Consensus 216 ~~~i~~~~aGH~lGs~~~~I~~~~~~i~Y~sgD~~~~~~~~~~~~~~~~~~DvLI~ 271 (520)
+++|+++++.|..++++|+|+.++++|+| |||+....... ...-...++|+||+
T Consensus 131 ~~~I~~~~~~H~~~s~g~~i~~~~~~i~y-sgDt~~~~~~~-~~~~~~~~~Dlli~ 184 (250)
T PRK11244 131 GLQVTPLPLNHSKLTFGYLLETAHSRVAY-LTDTVGLPEDT-LKFLRNNQPDLLVL 184 (250)
T ss_pred CEEEEEEeeCCCcceeEEEEecCCeEEEE-EcCCCCCCHHH-HHHHhcCCCCEEEE
Confidence 89999999999999999999999999999 99986422111 00011257999999
No 12
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.71 E-value=3.9e-17 Score=164.94 Aligned_cols=172 Identities=21% Similarity=0.226 Sum_probs=120.1
Q ss_pred eEEEcCCCCCCC----CCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccccccccccCCCCccccccc
Q 009999 2 KFTCLCQGGGFN----FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFA 77 (520)
Q Consensus 2 kl~~lGg~~~~~----~~sc~ll~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 77 (520)
||++||++|+.+ +.+|++|+.++.++|||||.+.... |..
T Consensus 1 ~~~~lGtg~~~p~~~r~~~~~~v~~~~~~iLiD~G~g~~~~-----------------------------------l~~- 44 (299)
T TIGR02651 1 EITFLGTGGGVPTKERNLPSIALKLNGELWLFDCGEGTQRQ-----------------------------------MLR- 44 (299)
T ss_pred CEEEEeCCCCCCCCCCCCceEEEEECCeEEEEECCHHHHHH-----------------------------------HHH-
Confidence 689999985543 4689999999999999999874320 000
Q ss_pred ccccccccccccccCCcccEEEecCC--CCCCchhhhhcccCC-----ceeEEEeHHHHHHHHHHHHHHHHHHHhhhhhc
Q 009999 78 EPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGF-----SAKIYITEAAARIGQLMMEELICMNMEYRQFY 150 (520)
Q Consensus 78 ~p~~~~~~~~~~~~~~~id~IlISH~--DH~g~LP~L~~~~~~-----~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~ 150 (520)
..++..++|+|||||. ||++|||.+.....+ ..+||++..+.+..+..+.- ..
T Consensus 45 ----------~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~Iy~p~~~~~~l~~~~~~----~~------ 104 (299)
T TIGR02651 45 ----------SGISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTIYGPPGIKEFIETSLRV----SY------ 104 (299)
T ss_pred ----------cCCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEEECCccHHHHHHHHHHH----cc------
Confidence 1124567999999999 999999988753221 45799999987654322111 00
Q ss_pred CCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhhceeeccCC-eEEeCCCEEEEEEecCCCCc
Q 009999 151 GAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGE-EACYNGILIIKAFSSGLDIG 229 (520)
Q Consensus 151 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~~~y~~-~~~l~~~~~i~~~~aGH~lG 229 (520)
. ...+ + -.+..+..++ .+.. ++++|+++++-|...
T Consensus 105 -------------------------------~--~~~~-~---------~~~~~~~~~~~~~~~-~~~~v~~~~~~H~~~ 140 (299)
T TIGR02651 105 -------------------------------T--YLNY-P---------IKIHEIEEGGLVFED-DGFKVEAFPLDHSIP 140 (299)
T ss_pred -------------------------------c--CCCc-e---------EEEEEccCCCceEec-CCEEEEEEEcCCCCc
Confidence 0 0001 1 1345555565 4666 589999999999999
Q ss_pred cEEEEEEeC--------------------------------------------------CeEEEEecCCCCCCCCCCccc
Q 009999 230 ACNWIISGA--------------------------------------------------KGNIAYISGSNFASGHAMDFD 259 (520)
Q Consensus 230 s~~~~I~~~--------------------------------------------------~~~i~Y~sgD~~~~~~~~~~~ 259 (520)
+.+|+|+.+ +++++| +||+.+... -
T Consensus 141 ~~gy~i~~~~~~~~~~~~k~~~~~l~~g~~~~~L~~g~~v~~~~G~~~~~~~~~~~~~~g~~i~y-~gDt~~~~~----~ 215 (299)
T TIGR02651 141 SLGYRFEEKDRPGKFDREKAKELGIPPGPLYGKLKRGETVTLIDGRIIDPEDVLGPPRKGRKIAY-TGDTRPCEE----V 215 (299)
T ss_pred eEEEEEEECCCCCCcCHHHHHHCCCCcchhHHHhhCCCeEEeCCCeEEeHHHcccCCcCCcEEEE-ecCCCChHH----H
Confidence 999999864 468999 999975321 1
Q ss_pred cccCCCCCEEEEcCCCCCCCcccCCCCccccCC
Q 009999 260 YRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDN 292 (520)
Q Consensus 260 ~~~~~~~DvLI~~~~~~~~~~~~~~~estyg~~ 292 (520)
.+.++++|+||+ |+||.+.
T Consensus 216 ~~~~~~~dlLi~--------------E~~~~~~ 234 (299)
T TIGR02651 216 IEFAKNADLLIH--------------EATFLDE 234 (299)
T ss_pred HHHHcCCCEEEE--------------ECCCCch
Confidence 245689999999 7888653
No 13
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.67 E-value=2e-16 Score=160.01 Aligned_cols=164 Identities=19% Similarity=0.237 Sum_probs=113.9
Q ss_pred EEEcCCCCCCC----CCCeEEEEEC----CEEEEEeCCCCCccccccCCCCcccccccccCCccccccccccCCCCcccc
Q 009999 3 FTCLCQGGGFN----FPPCHILNVS----GFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDL 74 (520)
Q Consensus 3 l~~lGg~~~~~----~~sc~ll~~~----~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 74 (520)
|++||++++.+ +.+|++|+.+ +.++|||||.+.... |
T Consensus 1 ~~~LGt~~~~p~~~r~~s~~lv~~~~~~~~~~iLiD~G~g~~~~-----------------------------------l 45 (303)
T TIGR02649 1 LIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQHQ-----------------------------------L 45 (303)
T ss_pred CEEEecCCCCCCCCCCccEEEEEccCCCCCCEEEEECCccHHHH-----------------------------------H
Confidence 57999985555 4789999975 379999999885421 0
Q ss_pred cccccccccccccccccCCcccEEEecCC--CCCCchhhhhccc---C--CceeEEEeHHHHHHHHHHHHHHHHHHHhhh
Q 009999 75 IFAEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRME---G--FSAKIYITEAAARIGQLMMEELICMNMEYR 147 (520)
Q Consensus 75 ~~~~p~~~~~~~~~~~~~~~id~IlISH~--DH~g~LP~L~~~~---~--~~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~ 147 (520)
....++..+||+|||||. ||++|||.|.... + -..+||+++.+.+..+.++. +..
T Consensus 46 -----------~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~Iygp~~~~~~l~~~~~----~~~--- 107 (303)
T TIGR02649 46 -----------LHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALR----ISG--- 107 (303)
T ss_pred -----------HHhCCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeEEEechhHHHHHHHHHH----hcc---
Confidence 001235678999999999 9999999875321 2 24689999998775433221 100
Q ss_pred hhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhhceeeccCCeEEeCCCEEEEEEecCCC
Q 009999 148 QFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLD 227 (520)
Q Consensus 148 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~~~y~~~~~l~~~~~i~~~~aGH~ 227 (520)
.| ..+ + ..++.+..++.+.. ++++|++++..|.
T Consensus 108 -----------~~-------------------------~~~-~---------~~~~~i~~~~~~~~-~~~~v~~~~~~H~ 140 (303)
T TIGR02649 108 -----------SW-------------------------TDY-P---------LEIVEIGAGEILDD-GLRKVTAYPLEHP 140 (303)
T ss_pred -----------cc-------------------------cCC-c---------eEEEEcCCCceEec-CCeEEEEEEccCc
Confidence 00 000 1 13455566676766 5799999999999
Q ss_pred CccEEEEEEe--------------------------------------------------CCeEEEEecCCCCCCCCCCc
Q 009999 228 IGACNWIISG--------------------------------------------------AKGNIAYISGSNFASGHAMD 257 (520)
Q Consensus 228 lGs~~~~I~~--------------------------------------------------~~~~i~Y~sgD~~~~~~~~~ 257 (520)
..+.+|+|+. .+++|+| +||+.+...
T Consensus 141 ~~~~gy~i~~~~~~g~~~~~kl~~lgi~~g~~~~~L~~g~~v~~~dg~~~~~~~~~~~~~~g~~i~y-~gDt~~~~~--- 216 (303)
T TIGR02649 141 LECYGYRIEEHDKPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAI-FGDTGPCDA--- 216 (303)
T ss_pred cceEEEEEeccCCcCCCCHHHHHHCCCCCChHHHHhcCCCeEEeCCCcEEcHHHeeCCCCCCcEEEE-ecCCCChHH---
Confidence 9999999975 4578999 999975321
Q ss_pred cccccCCCCCEEEE
Q 009999 258 FDYRAIQGSDLILY 271 (520)
Q Consensus 258 ~~~~~~~~~DvLI~ 271 (520)
..+.++++|+||+
T Consensus 217 -~~~~~~~adlLi~ 229 (303)
T TIGR02649 217 -ALDLAKGVDVMVH 229 (303)
T ss_pred -HHHHhcCCCEEEE
Confidence 1246789999999
No 14
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.64 E-value=1.5e-15 Score=153.09 Aligned_cols=175 Identities=15% Similarity=0.113 Sum_probs=112.9
Q ss_pred CeEEEcCCCC--CCC----------------------CCCeEEEEECC-EEEEEeCCCCCccccccCCCCcccccccccC
Q 009999 1 MKFTCLCQGG--GFN----------------------FPPCHILNVSG-FHVLFDCPLDLSALTVFSPLPNDFYKAICKE 55 (520)
Q Consensus 1 mkl~~lGg~~--~~~----------------------~~sc~ll~~~~-~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~ 55 (520)
|||++||.|+ +.| .++|++|+.++ .+||||||.++..-+
T Consensus 1 m~lt~LGtg~~~g~P~~~C~C~~C~~ar~~~~~~~~R~~ss~li~~~g~~~iLiD~G~g~~~ql---------------- 64 (302)
T PRK05184 1 MRIIVLGSAAGGGFPQWNCNCPNCRGARAGTIRAKPRTQSSIAVSADGEDWVLLNASPDIRQQI---------------- 64 (302)
T ss_pred CEEEEEEecCCCCCCcCCCCchhchhhhcCCCcCCcccccEEEEEcCCCEEEEEECChhHHHHH----------------
Confidence 9999999852 222 25789998766 469999998855310
Q ss_pred CccccccccccCCCCcccccccccccccccccccccCCcccEEEecCC--CCCCchhhhhcccCCceeEEEeHHHHHHHH
Q 009999 56 NSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQ 133 (520)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~id~IlISH~--DH~g~LP~L~~~~~~~~~Iy~T~~T~~l~~ 133 (520)
....+. . -..+++..+||+|||||. ||++|||.|.. +...+||+++.|.+..+
T Consensus 65 -------------------~~~~~~--~--~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~--~~~l~Vyg~~~~~~~l~ 119 (302)
T PRK05184 65 -------------------QATPAL--Q--PARGLRDTPIAAVVLTDGQIDHTTGLLTLRE--GQPFPVYATPAVLEDLS 119 (302)
T ss_pred -------------------Hhchhc--C--ccccCCcccccEEEEeCCchhhhhChHhhcc--CCCeEEEeCHHHHHHHH
Confidence 000000 0 001335668999999999 99999999954 55789999999865432
Q ss_pred HHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhhceeeccCCeEEe
Q 009999 134 LMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACY 213 (520)
Q Consensus 134 ~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~~~y~~~~~l 213 (520)
.... |. +. ...|.. -.++.+..++++++
T Consensus 120 ~~~~----------------------~f--------~~-------------~~~~~~---------~~~~~i~~~~~~~i 147 (302)
T PRK05184 120 TGFP----------------------IF--------NV-------------LDHYGG---------VQRRPIALDGPFAV 147 (302)
T ss_pred hcCC----------------------cc--------cc-------------cccccc---------eeeEEecCCCceEe
Confidence 1000 00 00 000000 13455666677777
Q ss_pred C--CCEEEEEEecCC-------------CCccEEEEEE--eCCeEEEEecCCCCCCCCCCccccccCCCCCEEEEc
Q 009999 214 N--GILIIKAFSSGL-------------DIGACNWIIS--GAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 272 (520)
Q Consensus 214 ~--~~~~i~~~~aGH-------------~lGs~~~~I~--~~~~~i~Y~sgD~~~~~~~~~~~~~~~~~~DvLI~~ 272 (520)
. ++++|+++++.| ...+++|+|+ .++++++|+|||...... -...++++|+||++
T Consensus 148 ~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~~~g~~~~y~tD~~~~~~~----~~~~~~gaDlli~d 219 (302)
T PRK05184 148 PGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDRATGKRLFYAPGLAEVTDA----LRARLAGADCVLFD 219 (302)
T ss_pred cCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEEecCCCcEEEEECCCCCCCHH----HHHHHhcCCEEEEe
Confidence 4 379999999975 4679999995 788899995455443211 12467899999994
No 15
>PRK02113 putative hydrolase; Provisional
Probab=99.62 E-value=2.3e-15 Score=148.21 Aligned_cols=166 Identities=17% Similarity=0.176 Sum_probs=111.4
Q ss_pred CeEEEcCCCCCC--CC------------------CCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCcccc
Q 009999 1 MKFTCLCQGGGF--NF------------------PPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQ 60 (520)
Q Consensus 1 mkl~~lGg~~~~--~~------------------~sc~ll~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~ 60 (520)
|++++||.|+.+ |. ++|++|+.++.+||||||.+....
T Consensus 1 m~~~~lGtg~~~g~P~~~c~c~~C~~~~~~~~R~~~s~li~~~~~~iLiD~G~g~~~~---------------------- 58 (252)
T PRK02113 1 MKIRILGSGTSTGVPEIGCTCPVCTSKDPRDNRLRTSALVETEGARILIDCGPDFREQ---------------------- 58 (252)
T ss_pred CEEEEEEeCCCCCeecCCCCCccCCCCCCCCcceeeEEEEEECCeEEEEECCchHHHH----------------------
Confidence 899999965222 32 367999999999999999874420
Q ss_pred ccccccCCCCcccccccccccccccccccccCCcccEEEecCC--CCCCchhhhhcc-cCCceeEEEeHHHHHHHHHHHH
Q 009999 61 NRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRM-EGFSAKIYITEAAARIGQLMME 137 (520)
Q Consensus 61 ~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~id~IlISH~--DH~g~LP~L~~~-~~~~~~Iy~T~~T~~l~~~~l~ 137 (520)
+.. .+..++|+|||||. ||++|||.+... .....+||+++.+.+.....+.
T Consensus 59 -------------l~~-------------~~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~~~ 112 (252)
T PRK02113 59 -------------MLR-------------LPFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAERLRSRMP 112 (252)
T ss_pred -------------HHh-------------cCccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHHHHHHHhhCC
Confidence 000 13457999999999 999999988542 1235789999987654321110
Q ss_pred HHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhhceeeccCCeEEeCCCE
Q 009999 138 ELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGIL 217 (520)
Q Consensus 138 d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~~~y~~~~~l~~~~ 217 (520)
.. +. ...|..+ .+ .+++.+..++.+++ +++
T Consensus 113 ~~----------~~---------------------------------~~~~~~~-~~-----~~~~~~~~g~~~~~-~~~ 142 (252)
T PRK02113 113 YC----------FV---------------------------------EHSYPGV-PN-----IPLREIEPDRPFLV-NHT 142 (252)
T ss_pred ee----------ec---------------------------------cCCCCCC-cc-----eeeEEcCCCCCEEE-CCe
Confidence 00 00 0001000 00 24677778888999 589
Q ss_pred EEEEEecCCC-CccEEEEEEeCCeEEEEecCCCCCCCCCCccccccCCCCCEEEEc
Q 009999 218 IIKAFSSGLD-IGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 272 (520)
Q Consensus 218 ~i~~~~aGH~-lGs~~~~I~~~~~~i~Y~sgD~~~~~~~~~~~~~~~~~~DvLI~~ 272 (520)
+|+++++.|. ..+++|+| ++++| +||+..... ...+.++++|+||++
T Consensus 143 ~i~~~~~~H~~~~~~gy~i----~~i~y-~~Dt~~~~~---~~~~~~~~~DlLi~e 190 (252)
T PRK02113 143 EVTPLRVMHGKLPILGYRI----GKMAY-ITDMLTMPE---EEYEQLQGIDVLVMN 190 (252)
T ss_pred EEEEEEecCCCccEEEEEe----CCEEE-ccCCCCCCH---HHHHHhcCCCEEEEh
Confidence 9999999996 56899999 47999 999863211 112356899999994
No 16
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.57 E-value=1.5e-14 Score=141.13 Aligned_cols=145 Identities=14% Similarity=0.085 Sum_probs=100.7
Q ss_pred CCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccccccccccCCCCcccccccccccccccccccccCC
Q 009999 14 FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVS 93 (520)
Q Consensus 14 ~~sc~ll~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~ 93 (520)
.++|++|+.++..||||||...-. . .++..
T Consensus 26 ~~~s~~i~~~~~~iliD~G~~~~~--------------------------------------~------------~~~~~ 55 (238)
T TIGR03307 26 QPCSAVIEFNGARTLIDAGLTDLA--------------------------------------E------------RFPPG 55 (238)
T ss_pred cceEEEEEECCcEEEEECCChhHh--------------------------------------h------------ccCcc
Confidence 578999999999999999954110 0 01345
Q ss_pred cccEEEecCC--CCCCchhhhhcccCCceeEEEeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchh
Q 009999 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (520)
Q Consensus 94 ~id~IlISH~--DH~g~LP~L~~~~~~~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 171 (520)
+||+|||||. ||++||+.+....+-..+||+++.+..+. +..+.
T Consensus 56 ~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~~-----~~~~~----------------------------- 101 (238)
T TIGR03307 56 SLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEGCD-----DLFKH----------------------------- 101 (238)
T ss_pred CCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHhhHH-----HHhcC-----------------------------
Confidence 7999999999 99999977754233467899998875321 11100
Q ss_pred hhhhhhccCCCCCCCCCCchHHHHHHHHhhceeeccCCeEEeCCCEEEEEEecCCCCccEEEEEEeCCeEEEEecCCCCC
Q 009999 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFA 251 (520)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~~~y~~~~~l~~~~~i~~~~aGH~lGs~~~~I~~~~~~i~Y~sgD~~~ 251 (520)
.+ +.. ....+..++.+++ ++++|+++++.|..++++|+|+.++++++| +||+..
T Consensus 102 ---------~~-----~~~----------~~~~~~~~~~~~~-~~~~i~~~~~~H~~~~~g~~i~~~~~~i~y-~gDt~~ 155 (238)
T TIGR03307 102 ---------PG-----ILD----------FSKPLEAFEPFDL-GGLRVTPLPLVHSKLTFGYLLETDGQRVAY-LTDTAG 155 (238)
T ss_pred ---------cc-----ccc----------ccccccCCceEEE-CCEEEEEEecCCCCcceEEEEecCCcEEEE-EecCCC
Confidence 00 000 0123556788888 589999999999999999999999999999 999854
Q ss_pred CCCCCccccccC--CCCCEEEE
Q 009999 252 SGHAMDFDYRAI--QGSDLILY 271 (520)
Q Consensus 252 ~~~~~~~~~~~~--~~~DvLI~ 271 (520)
..... ...+ .++|+||+
T Consensus 156 ~~~~~---~~~~~~~~~D~li~ 174 (238)
T TIGR03307 156 LPPDT---EAFLKNHPLDVLIL 174 (238)
T ss_pred CCHHH---HHHHhcCCCCEEEE
Confidence 21110 1122 37999999
No 17
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.56 E-value=2.5e-14 Score=143.72 Aligned_cols=159 Identities=15% Similarity=0.097 Sum_probs=105.8
Q ss_pred CCeEEEEE-CCEEEEEeCCCCCccccccCCCCcccccccccCCccccccccccCCCCcccccccccccccccccccccCC
Q 009999 15 PPCHILNV-SGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVS 93 (520)
Q Consensus 15 ~sc~ll~~-~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~ 93 (520)
++|++|+. ++.+||||||.++...+ .. . ..+ . ...+++..
T Consensus 38 rss~ll~~~g~~~iLID~Gpd~r~ql--------~~------------------~---~~~---~-------~~~gl~~~ 78 (302)
T TIGR02108 38 QSSIAVSADGERWVLLNASPDIRQQI--------QA------------------T---PAL---H-------PQRGLRHT 78 (302)
T ss_pred ccEEEEEeCCCEEEEEECCHHHHHHH--------Hh------------------C---ccc---c-------cccCCCcc
Confidence 56889965 55799999999866421 00 0 000 0 01245678
Q ss_pred cccEEEecCC--CCCCchhhhhcccCCceeEEEeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchh
Q 009999 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (520)
Q Consensus 94 ~id~IlISH~--DH~g~LP~L~~~~~~~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 171 (520)
+||+|||||. ||+.||+.|.+ +...|||+++.|.+..+. . . .+ ..
T Consensus 79 ~IdaI~lTH~H~DHi~GL~~L~~--~~~lpVya~~~t~~~L~~----~----~----~~----------------~~--- 125 (302)
T TIGR02108 79 PIAGVVLTDGEIDHTTGLLTLRE--GQPFTLYATEMVLQDLSD----N----P----IF----------------NV--- 125 (302)
T ss_pred cCCEEEEeCCCcchhhCHHHHcC--CCCceEEECHHHHHHHHh----C----C----Cc----------------cc---
Confidence 8999999999 99999999965 457899999998775321 0 0 00 00
Q ss_pred hhhhhhccCCCCCCCCCCchHHHHHHHHhhceeeccCCeEEeC----CCEEEEEEecC--------C------CCccEEE
Q 009999 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYN----GILIIKAFSSG--------L------DIGACNW 233 (520)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~~~y~~~~~l~----~~~~i~~~~aG--------H------~lGs~~~ 233 (520)
...| . -+.+.++.++.+.+. ++++|+++++- | ...+++|
T Consensus 126 -------------~~~~-~---------~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy 182 (302)
T TIGR02108 126 -------------LDHW-N---------VRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGL 182 (302)
T ss_pred -------------cchh-h---------ccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEE
Confidence 0000 0 123455666777663 25999999998 5 2578999
Q ss_pred EEEeC--CeEEEEecCCCCCCCCCCccccccCCCCCEEEEc
Q 009999 234 IISGA--KGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 272 (520)
Q Consensus 234 ~I~~~--~~~i~Y~sgD~~~~~~~~~~~~~~~~~~DvLI~~ 272 (520)
+|+.+ +++++| ++|++... ..-.+.++++|+||++
T Consensus 183 ~i~~~~~g~~~~y-~tD~g~~~---~~~~~~l~~~d~liid 219 (302)
T TIGR02108 183 KIEDGTTGKRLFY-IPGCAEIT---DDLKARMAGADLVFFD 219 (302)
T ss_pred EEEeCCCCcEEEE-ECCCCCCC---HHHHHHHhCCCEEEEe
Confidence 99988 899999 88886321 1123467899999994
No 18
>PRK00055 ribonuclease Z; Reviewed
Probab=99.55 E-value=6.7e-15 Score=146.12 Aligned_cols=88 Identities=24% Similarity=0.272 Sum_probs=65.3
Q ss_pred CeEEEcCCCCCCC----CCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccccccccccCCCCcccccc
Q 009999 1 MKFTCLCQGGGFN----FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIF 76 (520)
Q Consensus 1 mkl~~lGg~~~~~----~~sc~ll~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 76 (520)
|||++||+++..+ +++|++|+.++.++|||||.+.... + .
T Consensus 2 m~i~~LGsg~~~~~~~r~~~~~li~~~~~~iLiD~G~g~~~~-----------------------------------l-~ 45 (270)
T PRK00055 2 MELTFLGTGSGVPTPTRNVSSILLRLGGELFLFDCGEGTQRQ-----------------------------------L-L 45 (270)
T ss_pred eEEEEEecCCCCCcCCCCCCEEEEEECCcEEEEECCHHHHHH-----------------------------------H-H
Confidence 8999999984432 4899999999999999999874320 0 0
Q ss_pred cccccccccccccccCCcccEEEecCC--CCCCchhhhhccc-----CCceeEEEeHHHHHHHHH
Q 009999 77 AEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRME-----GFSAKIYITEAAARIGQL 134 (520)
Q Consensus 77 ~~p~~~~~~~~~~~~~~~id~IlISH~--DH~g~LP~L~~~~-----~~~~~Iy~T~~T~~l~~~ 134 (520)
...++..+||+|||||. ||++|||.|.... ....+||+++.+.+....
T Consensus 46 ----------~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~~~~~~l~iy~p~~~~~~~~~ 100 (270)
T PRK00055 46 ----------KTGIKPRKIDKIFITHLHGDHIFGLPGLLSTRSLSGRTEPLTIYGPKGIKEFVET 100 (270)
T ss_pred ----------HcCCCHHHCCEEEEeCCCchhhCcHHHHHHHhhhcCCCceEEEECCccHHHHHHH
Confidence 01134568999999999 9999999886422 124579999988765443
No 19
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=99.42 E-value=6.2e-13 Score=133.13 Aligned_cols=88 Identities=25% Similarity=0.268 Sum_probs=65.2
Q ss_pred CeEEEcCCCCCCC----CCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccccccccccCCCCcccccc
Q 009999 1 MKFTCLCQGGGFN----FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIF 76 (520)
Q Consensus 1 mkl~~lGg~~~~~----~~sc~ll~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 76 (520)
|++++||.+|+.| ..+.++|+.++..+|||||-+....+
T Consensus 2 m~i~fLGtg~~~Pt~~r~~~s~ll~~~~~~~L~DcGeGt~~~l------------------------------------- 44 (292)
T COG1234 2 MEITFLGTGGAVPTKDRNVSSILLRLEGEKFLFDCGEGTQHQL------------------------------------- 44 (292)
T ss_pred cEEEEEecCCCCCcCccccceeEEEeCCeeEEEECCHhHHHHH-------------------------------------
Confidence 8999999996644 46789999999999999998854211
Q ss_pred cccccccccccccccCCcccEEEecCC--CCCCchhhhhcccCC---c--eeEEEeHHHHHHHHH
Q 009999 77 AEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGF---S--AKIYITEAAARIGQL 134 (520)
Q Consensus 77 ~~p~~~~~~~~~~~~~~~id~IlISH~--DH~g~LP~L~~~~~~---~--~~Iy~T~~T~~l~~~ 134 (520)
....+...+||+|||||. ||+.|||-|.....+ . ..||.....+++...
T Consensus 45 ---------~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~~~~~~l~iygP~g~~~~~~~ 100 (292)
T COG1234 45 ---------LRAGLPPRKIDAIFITHLHGDHIAGLPGLLVSRSFRGRREPLKIYGPPGIKEFVET 100 (292)
T ss_pred ---------HHhcCChhhccEEEeeccccchhcCcHHHHHHhhccCCCCceeEECCcchhhhhhh
Confidence 012234558999999999 999999977653322 2 379999888765443
No 20
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.39 E-value=4.9e-12 Score=122.49 Aligned_cols=149 Identities=16% Similarity=0.130 Sum_probs=103.9
Q ss_pred CeEEEcCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccccccccccCCCCcccccccccc
Q 009999 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (520)
Q Consensus 1 mkl~~lGg~~~~~~~sc~ll~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 80 (520)
|++++||. +|++|+.++.+||+||+..-.. . .. + .
T Consensus 1 m~i~~lG~-------s~~li~~~~~~iLiDP~~~~~~------~-~~--------------------------~-~---- 35 (228)
T PRK00685 1 MKITWLGH-------SAFLIETGGKKILIDPFITGNP------L-AD--------------------------L-K---- 35 (228)
T ss_pred CEEEEEcc-------eEEEEEECCEEEEECCCCCCCC------C-CC--------------------------C-C----
Confidence 89999985 5899999999999999764110 0 00 0 0
Q ss_pred cccccccccccCCcccEEEecCC--CCCCchhhhhcccCCceeEEEeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 009999 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (520)
Q Consensus 81 ~~~~~~~~~~~~~~id~IlISH~--DH~g~LP~L~~~~~~~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~ 158 (520)
....++|+|||||. ||+++++.+.. ..+.+||++..+.+..+ .
T Consensus 36 ---------~~~~~id~vliTH~H~DH~~~~~~~~~--~~~~~v~~~~~~~~~~~----~-------------------- 80 (228)
T PRK00685 36 ---------PEDVKVDYILLTHGHGDHLGDTVEIAK--RTGATVIANAELANYLS----E-------------------- 80 (228)
T ss_pred ---------hhcCcccEEEeCCCCccccccHHHHHH--hCCCEEEEeHHHHHHHH----h--------------------
Confidence 01127999999999 99999887654 34678999876433211 0
Q ss_pred cchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhhceeeccCCeEEeCCCEEEEEEecCCCCc---------
Q 009999 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIG--------- 229 (520)
Q Consensus 159 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~~~y~~~~~l~~~~~i~~~~aGH~lG--------- 229 (520)
.+ + .++..++.++.+++ ++++|+++++-|...
T Consensus 81 ----------------------~~-----~-----------~~~~~~~~~~~~~~-~~~~i~~~p~~H~~~~~~~~~~~~ 121 (228)
T PRK00685 81 ----------------------KG-----V-----------EKTHPMNIGGTVEF-DGGKVKLTPALHSSSFIDEDGITY 121 (228)
T ss_pred ----------------------cC-----C-----------CceeeccCCCcEEE-CCEEEEEEEEEcCCCCcCCCCccc
Confidence 00 0 14566777888899 589999999999653
Q ss_pred ---cEEEEEEeCCeEEEEecCCCCCCCCCCccccccCCCCCEEEE
Q 009999 230 ---ACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILY 271 (520)
Q Consensus 230 ---s~~~~I~~~~~~i~Y~sgD~~~~~~~~~~~~~~~~~~DvLI~ 271 (520)
+.+|+|+.++++|+| |||++....... .....++|++++
T Consensus 122 ~~~~~g~~i~~~~~~i~~-~GDt~~~~~~~~--~~~~~~~D~~~~ 163 (228)
T PRK00685 122 LGNPTGFVITFEGKTIYH-AGDTGLFSDMKL--IGELHKPDVALL 163 (228)
T ss_pred CCCceEEEEEECCeEEEE-ecCccchhHHHH--HHHhhCCCEEEE
Confidence 589999999999999 999865322111 111246899998
No 21
>PRK02126 ribonuclease Z; Provisional
Probab=99.37 E-value=3.9e-12 Score=129.62 Aligned_cols=73 Identities=18% Similarity=0.144 Sum_probs=54.8
Q ss_pred CCCeEEEEE--CCEEEEEeCCCCCccccccCCCCcccccccccCCccccccccccCCCCccccccccccccccccccccc
Q 009999 14 FPPCHILNV--SGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWN 91 (520)
Q Consensus 14 ~~sc~ll~~--~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~ 91 (520)
.-+|++|.. ++..+|||||. ...+. . .+
T Consensus 15 ~dn~~~l~~~~~~~~iLiD~G~-~~~l~------------------------------------~-------------~~ 44 (334)
T PRK02126 15 DDPGLYVDFLFERRALLFDLGD-LHHLP------------------------------------P-------------RE 44 (334)
T ss_pred CCcEEEEEECCCCeEEEEcCCC-HHHHh------------------------------------h-------------cC
Confidence 678999986 48999999998 33210 0 13
Q ss_pred CCcccEEEecCC--CCCCchhhhhccc-C--CceeEEEeHHHHHHHHHHH
Q 009999 92 VSFIDVVLISSP--MGMLGLPFLTRME-G--FSAKIYITEAAARIGQLMM 136 (520)
Q Consensus 92 ~~~id~IlISH~--DH~g~LP~L~~~~-~--~~~~Iy~T~~T~~l~~~~l 136 (520)
...||+|||||. ||++|+|.|.... + -..+||+.+.|.++.+..+
T Consensus 45 ~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~iygp~~~~~~l~~~~ 94 (334)
T PRK02126 45 LLRISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLRLFGPPGFADQVEHKL 94 (334)
T ss_pred CCccCEEEEcCCChhHhCcHHHHHHHhccCCCCeEEEECHHHHHHHHHHh
Confidence 457999999999 9999999998742 1 1358999999998765544
No 22
>PRK04286 hypothetical protein; Provisional
Probab=99.31 E-value=1.5e-11 Score=123.79 Aligned_cols=194 Identities=14% Similarity=0.018 Sum_probs=107.1
Q ss_pred CeEEEcCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccccccccccCCCCcccccccccc
Q 009999 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (520)
Q Consensus 1 mkl~~lGg~~~~~~~sc~ll~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 80 (520)
|++.+||++....-++|++|+.++.+||+|+|.....+.. +.. ..|... +.+.+ .+
T Consensus 1 m~~~~l~s~s~g~~~~~~~I~~~~~~iLID~G~~~~~~~~------~~~-~~~~~~---------------~~~~~-~~- 56 (298)
T PRK04286 1 MKIIPLASESLGVRSMATFVETKDVRILIDPGVSLAPRRY------GLP-PHPIEL---------------ERLEE-VR- 56 (298)
T ss_pred CEEEEEEeCCCCceeeEEEEEECCeEEEEcCCCCcCcccc------CCC-CcchhH---------------HHHHH-HH-
Confidence 8999999962222359999999999999999977543210 000 000000 00000 00
Q ss_pred cccccccccccCCcccEEEecCC--CCCCchhhhh-c--ccCCceeEEEeHHHHHHHHHH-HHHHHHHHHhhhhhcCCCC
Q 009999 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLT-R--MEGFSAKIYITEAAARIGQLM-MEELICMNMEYRQFYGAEE 154 (520)
Q Consensus 81 ~~~~~~~~~~~~~~id~IlISH~--DH~g~LP~L~-~--~~~~~~~Iy~T~~T~~l~~~~-l~d~~~~~~~~~~~~~~~~ 154 (520)
........+||+|||||. ||++++..+. . ...+..+||++.++......- +... ....
T Consensus 57 -----~~i~~~~~~id~IliTH~H~DHi~g~~~~~y~~~~~~~~i~iy~~~~~~~~~~~~~~~~~-~~~~---------- 120 (298)
T PRK04286 57 -----EKILEYAKKADVITISHYHYDHHTPFYEDPYELSDEEIPKEIYKGKIVLIKDPTENINWS-QRRR---------- 120 (298)
T ss_pred -----HHhhcccccCCEEEecCCccccCCCccccccccccccchHHHhcCceecccCHHHHcCHH-HHhh----------
Confidence 012234568999999999 9998765441 1 012246788887775211000 1000 0000
Q ss_pred CCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhhceeeccCCeEEeCCCEEEEEE-ecCCCC--ccE
Q 009999 155 SSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAF-SSGLDI--GAC 231 (520)
Q Consensus 155 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~~~y~~~~~l~~~~~i~~~-~aGH~l--Gs~ 231 (520)
. . ++...+... .....+..++.+.+ ++++|++. +..|.. .+.
T Consensus 121 ---------------------------~----~--~~~~~v~~~-~~~~~~~~g~~~~i-g~~~V~~~~~v~H~~~~~~~ 165 (298)
T PRK04286 121 ---------------------------A----P--RFLKAVKDI-AKKIEYADGKTFRF-GGTTIEFSPPVPHGADGSKL 165 (298)
T ss_pred ---------------------------H----H--hHHHHHHhc-CCceEECCCCEEEE-CCEEEEEeccCCCCCCCCcc
Confidence 0 0 001111111 12234456788888 58999966 888953 244
Q ss_pred EE----EEEeCCeEEEEecCCCC-CCCCCCccccccC--CCCCEEEEcC
Q 009999 232 NW----IISGAKGNIAYISGSNF-ASGHAMDFDYRAI--QGSDLILYSD 273 (520)
Q Consensus 232 ~~----~I~~~~~~i~Y~sgD~~-~~~~~~~~~~~~~--~~~DvLI~~~ 273 (520)
+| +|+.++++++| +||++ ...... .+.+ .++|+||+++
T Consensus 166 Gy~i~~ri~~gg~~~~~-~gDt~~~~~~~~---~~~l~~~d~dlLi~~~ 210 (298)
T PRK04286 166 GYVIMVRISDGDESFVF-ASDVQGPLNDEA---VEFILEKKPDVVIIGG 210 (298)
T ss_pred ceEEEEEEEeCCEEEEE-ECCCCCCCCHHH---HHHHhcCCCCEEEeCC
Confidence 44 66788999999 99997 211111 1223 3899999953
No 23
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.30 E-value=4.7e-12 Score=119.08 Aligned_cols=120 Identities=19% Similarity=0.240 Sum_probs=85.0
Q ss_pred CcccEEEecCC--CCCCchhhhhccc-CCceeEEEeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhc
Q 009999 93 SFIDVVLISSP--MGMLGLPFLTRME-GFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELL 169 (520)
Q Consensus 93 ~~id~IlISH~--DH~g~LP~L~~~~-~~~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 169 (520)
..||+|||||. ||+.||+.|.... ....+||+++.+.+..+.. . ..... .+
T Consensus 28 ~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~--~-~~~~~----~~------------------- 81 (194)
T PF12706_consen 28 PDIDAVFITHSHPDHIAGLPSLIPAWAKHPKPIYGPPETKEFLREY--K-FGILD----LY------------------- 81 (194)
T ss_dssp GCEEEEE-SBSSHHHHTTHHHHHHHHHHCTTEEEECHHHHHHHHHH--H-HTHHT----TC-------------------
T ss_pred CCCCEEEECCCCccccCChHHHHHHhhcccceEEecHHHHHHHHhh--h-ccccc----cc-------------------
Confidence 48999999999 9999988887631 1122999999998865532 0 00000 00
Q ss_pred hhhhhhhhccCCCCCCCCCCchHHHHHHHHhhceeeccCCeEEeCCCEEEEEEecCCCCccEE----EEEEeCCeEEEEe
Q 009999 170 PSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACN----WIISGAKGNIAYI 245 (520)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~~~y~~~~~l~~~~~i~~~~aGH~lGs~~----~~I~~~~~~i~Y~ 245 (520)
. .... ..+..+..++.+++ ++++|+++++.|..++++ |+|+.++++|+|
T Consensus 82 ------------~----~~~~---------~~~~~~~~~~~~~~-~~~~i~~~~~~H~~~~~~~~~g~~i~~~~~~i~~- 134 (194)
T PF12706_consen 82 ------------P----EEDN---------FDIIEISPGDEFEI-GDFRITPFPANHGPPSYGGNKGFVIEPDGKKIFY- 134 (194)
T ss_dssp ------------C----TTSG---------EEEEEECTTEEEEE-TTEEEEEEEEESSSCCEEECCEEEEEETTEEEEE-
T ss_pred ------------c----cccc---------eeEEEeccCceEEe-ceEEEEEEeccccccccccCceEEEecCCcceEE-
Confidence 0 0000 24566666778888 589999999999999887 999999999999
Q ss_pred cCCCCCCCCCCccccccCCCCCEEEEc
Q 009999 246 SGSNFASGHAMDFDYRAIQGSDLILYS 272 (520)
Q Consensus 246 sgD~~~~~~~~~~~~~~~~~~DvLI~~ 272 (520)
+||+.. + .+.++++|++|++
T Consensus 135 ~gD~~~--~-----~~~~~~~D~li~~ 154 (194)
T PF12706_consen 135 SGDTNY--D-----FEELKNIDLLILE 154 (194)
T ss_dssp ETSSSS--C-----HHHHTTBSEEEEE
T ss_pred eeccch--h-----hhhhccCCEEEEe
Confidence 999975 1 2334789999993
No 24
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.19 E-value=3.7e-11 Score=111.27 Aligned_cols=140 Identities=19% Similarity=0.131 Sum_probs=93.1
Q ss_pred CCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccccccccccCCCCccccccccccccccccccccc
Q 009999 12 FNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWN 91 (520)
Q Consensus 12 ~~~~sc~ll~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~ 91 (520)
..+++|++|+.++..+|+|||..... . .+ ..... . .
T Consensus 3 ~~~~~~~li~~~~~~iliD~g~~~~~---------~-------------------------~~-~~l~~-------~--~ 38 (183)
T smart00849 3 GVGVNSYLVEGDGGAILIDTGPGEAE---------D-------------------------LL-AELKK-------L--G 38 (183)
T ss_pred ccceeEEEEEeCCceEEEeCCCChhH---------H-------------------------HH-HHHHH-------c--C
Confidence 45789999999999999999965321 0 00 00000 1 2
Q ss_pred CCcccEEEecCC--CCCCchhhhhcccCCceeEEEeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhc
Q 009999 92 VSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELL 169 (520)
Q Consensus 92 ~~~id~IlISH~--DH~g~LP~L~~~~~~~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 169 (520)
..+||+|+|||. ||++|++.+.+. .+.+||+++.+.+..+..... .. .
T Consensus 39 ~~~i~~i~iTH~H~DH~~g~~~~~~~--~~~~i~~~~~~~~~~~~~~~~----~~-----~------------------- 88 (183)
T smart00849 39 PKDIDAIILTHGHPDHIGGLPELLEA--PGAPVYAPEGTAELLKDLLKL----GG-----A------------------- 88 (183)
T ss_pred chhhcEEEecccCcchhccHHHHHhC--CCCcEEEchhhhHHHhccchh----cc-----c-------------------
Confidence 568999999999 999999999883 577899998887643321110 00 0
Q ss_pred hhhhhhhhccCCCCCCCCCCchHHHHHHHHhhceeeccCCeEEeCCCEEEEEEec-CCCCccEEEEEEeCCeEEEEecCC
Q 009999 170 PSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWIISGAKGNIAYISGS 248 (520)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~~~y~~~~~l~~~~~i~~~~a-GH~lGs~~~~I~~~~~~i~Y~sgD 248 (520)
+. .. .... ..+..+..++.+.++ +.+++++++ ||..|+++|.++. ++++| +||
T Consensus 89 ~~---------~~--~~~~-----------~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~~~~~~~~~--~~vl~-~gD 142 (183)
T smart00849 89 LG---------AE--APPP-----------PPDRTLKDGEELDLG-GLELEVIHTPGHTPGSIVLYLPE--GKILF-TGD 142 (183)
T ss_pred cC---------cC--CCCC-----------ccceecCCCCEEEeC-CceEEEEECCCCCCCcEEEEECC--CCEEE-ECC
Confidence 00 00 0000 245667778889885 566666555 8999999988763 78999 999
Q ss_pred CCC
Q 009999 249 NFA 251 (520)
Q Consensus 249 ~~~ 251 (520)
+..
T Consensus 143 ~~~ 145 (183)
T smart00849 143 LLF 145 (183)
T ss_pred eee
Confidence 854
No 25
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=99.11 E-value=1.5e-09 Score=112.50 Aligned_cols=171 Identities=12% Similarity=0.124 Sum_probs=113.4
Q ss_pred cccEEEecCC--CCCCchhhhhcccCC-ceeEEEeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhch
Q 009999 94 FIDVVLISSP--MGMLGLPFLTRMEGF-SAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLP 170 (520)
Q Consensus 94 ~id~IlISH~--DH~g~LP~L~~~~~~-~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 170 (520)
..-+=++||+ ||..||-- .+ ++++||+.-|+.+....+. +
T Consensus 112 ~~s~yFLsHFHSDHy~GL~~-----sW~~p~lYCS~ita~Lv~~~~~----v---------------------------- 154 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDHYIGLTK-----SWSHPPLYCSPITARLVPLKVS----V---------------------------- 154 (481)
T ss_pred ccceeeeecccccccccccc-----cccCCcccccccchhhhhhhcc----c----------------------------
Confidence 3446799999 99988732 33 4569999999886433211 0
Q ss_pred hhhhhhhccCCCCCCCCCCchHHHHHHHHhhceeeccCCeEEeCCCEEEEEEecCCCCccEEEEEEeC-CeEEEEecCCC
Q 009999 171 SALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGA-KGNIAYISGSN 249 (520)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~~~y~~~~~l~~~~~i~~~~aGH~lGs~~~~I~~~-~~~i~Y~sgD~ 249 (520)
+. ..++.++-++++.+. ++.++.++|.|+.|+++|..+.. +.++++ |||+
T Consensus 155 -------------------~~--------~~i~~l~l~~~~~i~-~~~vt~ldAnHCPGa~mf~F~~~~~~~~lh-tGDF 205 (481)
T KOG1361|consen 155 -------------------TK--------QSIQALDLNQPLEIP-GIQVTLLDANHCPGAVMFLFELSFGPCILH-TGDF 205 (481)
T ss_pred -------------------Ch--------hhceeecCCCceeec-ceEEEEeccccCCCceEEEeecCCCceEEe-cCCc
Confidence 00 367888999999995 79999999999999999999864 569999 9999
Q ss_pred CCCCCCCccccccC-CCCCEEEEcCCCCCCCcccCCCCccccCCCchhHhhhccCCCchhHHHHHHHHHHHHHHHHHHhc
Q 009999 250 FASGHAMDFDYRAI-QGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKA 328 (520)
Q Consensus 250 ~~~~~~~~~~~~~~-~~~DvLI~~~~~~~~~~~~~~~estyg~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~I~~tl~~ 328 (520)
.............. ..+|.+.+ +.||.++... +|++++. +.+.++.|..-...
T Consensus 206 R~s~~m~~~p~~~~~~~i~~lyL--------------DtTycnp~y~-------Fpsq~es-----vq~v~~~i~~~~~~ 259 (481)
T KOG1361|consen 206 RASADMSKEPALTLEQTIDILYL--------------DTTYCNPKYD-------FPSQEES-----VQEVVDVIRSHASK 259 (481)
T ss_pred ccChhhhhChHHhcCCccceEEE--------------eecccCCCCC-------CccHHHH-----HHHHHHHHHhhhhh
Confidence 65432111111222 46888888 7899888764 3444333 12223334443333
Q ss_pred CCe--EEEecCChHH---HHHHHHHHHHHHHhCCCceeEEEE
Q 009999 329 GGS--VLIPINRVGV---FLQLLEQIAIFMECSSLKIPIYII 365 (520)
Q Consensus 329 gG~--VLIP~~~~Gr---~qEll~~L~~~~~~~~l~~pI~~~ 365 (520)
+-. ++|.++.+|+ .+|+...| ..+|++.
T Consensus 260 ~~~~Li~v~~ysiGkE~l~~eia~~l---------~~kI~v~ 292 (481)
T KOG1361|consen 260 NDRVLIVVGTYSIGKEKLLLEIARIL---------NSKIWVE 292 (481)
T ss_pred CCceEEEEEEEecchhHHHHHHHHHh---------CCceEEe
Confidence 323 5667788887 44444444 6789887
No 26
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=99.05 E-value=1.9e-09 Score=105.43 Aligned_cols=131 Identities=9% Similarity=-0.026 Sum_probs=84.8
Q ss_pred CCcccEEEecCC--CCCCchhhhhc-c-cC---Cce-eEEEeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhh
Q 009999 92 VSFIDVVLISSP--MGMLGLPFLTR-M-EG---FSA-KIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKW 163 (520)
Q Consensus 92 ~~~id~IlISH~--DH~g~LP~L~~-~-~~---~~~-~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~ 163 (520)
...++.|||||. ||++|||.+.- + .. -+. .||..+.+.+..+ +++++.+..+..
T Consensus 38 ~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~ve----~~~~~~~~~~~~-------------- 99 (277)
T TIGR02650 38 VAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNAAEE----ETSEFIKAANED-------------- 99 (277)
T ss_pred HhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhHHHH----HHHHHHHHhhhh--------------
Confidence 446899999999 99999965543 2 11 122 4999988877544 333222210000
Q ss_pred hHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhhceeeccCCeEEeCC---CEEEEEEecCCCC---ccEEEEEE-
Q 009999 164 EELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNG---ILIIKAFSSGLDI---GACNWIIS- 236 (520)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~~~y~~~~~l~~---~~~i~~~~aGH~l---Gs~~~~I~- 236 (520)
. .+ + -.+..++.++.+.+.. ...|++++..|.+ -|.+|.|.
T Consensus 100 ------------------~----~~-~---------~~~~~~~~~e~~~~r~~~~~~~V~~f~t~H~v~~~~s~GY~~~~ 147 (277)
T TIGR02650 100 ------------------L----FF-F---------FNHHLEEEDERFFLDAAGFFKRVQPFFRKHHASEESFFGHHFEE 147 (277)
T ss_pred ------------------h----cc-C---------cccCCCCCCcEEEeecCCccEEEecCccccccCccCccCeEEEE
Confidence 0 00 1 1345566677776653 4999999999986 57777763
Q ss_pred -------------------------------eCCeEEEEecCCCCCCCCCCccccccCCCCCEEEEcCCCCCCCcccCCC
Q 009999 237 -------------------------------GAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQ 285 (520)
Q Consensus 237 -------------------------------~~~~~i~Y~sgD~~~~~~~~~~~~~~~~~~DvLI~~~~~~~~~~~~~~~ 285 (520)
...++|+| |||+.+.. .+.+.+||+||+
T Consensus 148 ~r~KLK~E~~~l~~~eI~~l~~~gg~~~t~e~~~~~vvy-sGDT~~~~------~~~a~~adlLIh-------------- 206 (277)
T TIGR02650 148 RRKKKEEEFGGDDKKEARLLKEEGGDDFTREEHHKILLI-IGDDLAAD------DEEEEGGEELIH-------------- 206 (277)
T ss_pred EeecchHhHcCCCHHHHHHHHHhCCccccccccCcEEEE-eCCCCCCC------hHHhcCCCEEEE--------------
Confidence 12378999 99996542 245789999999
Q ss_pred CccccCCC
Q 009999 286 SSFSDDNN 293 (520)
Q Consensus 286 estyg~~~ 293 (520)
|+||.+..
T Consensus 207 EaTf~d~~ 214 (277)
T TIGR02650 207 ECCFFDDA 214 (277)
T ss_pred eccccccc
Confidence 78886653
No 27
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=98.87 E-value=3.2e-08 Score=101.57 Aligned_cols=67 Identities=21% Similarity=0.147 Sum_probs=49.6
Q ss_pred hceeeccCCeEEeCCCEEEEEEecCC-----------CC-----------ccEEEEEEeCCeEEEEecCCCCCCCCCCcc
Q 009999 201 KVQTLRFGEEACYNGILIIKAFSSGL-----------DI-----------GACNWIISGAKGNIAYISGSNFASGHAMDF 258 (520)
Q Consensus 201 ~i~~~~y~~~~~l~~~~~i~~~~aGH-----------~l-----------Gs~~~~I~~~~~~i~Y~sgD~~~~~~~~~~ 258 (520)
+++.++.++.+++ ++++|++.+|-| .. .+++|+|+.++++|.| +||++........
T Consensus 160 rv~~v~~Ge~i~i-g~v~It~lpa~h~~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~~~tvy~-sGDT~~~~~~~~i 237 (355)
T PRK11709 160 RCIVVKPGDVVKV-KDIKIHALDSFDRTALVTLPADGKAAGGVLPDDMDRRAVNYLFKTPGGNIYH-SGDSHYSNYFAKH 237 (355)
T ss_pred eEEEecCCCcEEE-CCEEEEEEeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEE-eCCCCccHHHHHH
Confidence 6788999999999 589999999943 21 2589999999999999 9999764211111
Q ss_pred ccccCCCCCEEEE
Q 009999 259 DYRAIQGSDLILY 271 (520)
Q Consensus 259 ~~~~~~~~DvLI~ 271 (520)
....++|++++
T Consensus 238 --~~~~~iDvall 248 (355)
T PRK11709 238 --GNDHQIDVALG 248 (355)
T ss_pred --HhcCCCCEEEe
Confidence 11125899998
No 28
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=98.82 E-value=1.8e-08 Score=105.70 Aligned_cols=94 Identities=15% Similarity=0.052 Sum_probs=69.0
Q ss_pred cCCcccEEEecCC--CCCCchhhhhcccCCceeEEEeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhh
Q 009999 91 NVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELEL 168 (520)
Q Consensus 91 ~~~~id~IlISH~--DH~g~LP~L~~~~~~~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 168 (520)
+..+||+|++||. ||+||++.|.+.. .+.+||+++.+.++.+ ...
T Consensus 66 ~~~~Id~IilTH~H~DHiggl~~l~~~~-p~a~V~~~~~~~~~l~----~~~---------------------------- 112 (394)
T PRK11921 66 DLDKIDYIVANHGEIDHSGALPELMKEI-PDTPIYCTKNGAKSLK----GHY---------------------------- 112 (394)
T ss_pred CcccCCEEEeCCCCCchhhHHHHHHHHC-CCCEEEECHHHHHHHH----HHh----------------------------
Confidence 4568999999999 9999999998732 2679999988765321 100
Q ss_pred chhhhhhhhccCCCCCCCCCCchHHHHHHHHhhceeeccCCeEEeCCCEEEEEE--ecCCCCccEEEEEEeCCeEEEEec
Q 009999 169 LPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAF--SSGLDIGACNWIISGAKGNIAYIS 246 (520)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~~~y~~~~~l~~~~~i~~~--~aGH~lGs~~~~I~~~~~~i~Y~s 246 (520)
+ ..| +++.++.++.+++ ++.+++++ |.+|..|++.+.+. ..+++| |
T Consensus 113 -------------~---~~~------------~~~~v~~g~~l~l-G~~~l~~i~tP~~H~p~~~~~y~~--~~~vLF-s 160 (394)
T PRK11921 113 -------------H---QDW------------NFVVVKTGDRLEI-GSNELIFIEAPMLHWPDSMFTYLT--GDNILF-S 160 (394)
T ss_pred -------------C---CCC------------ceEEeCCCCEEee-CCeEEEEEeCCCCCCCCceEEEEc--CCCEEE-e
Confidence 0 011 2456777889999 57888888 44499999887774 467999 9
Q ss_pred CCC
Q 009999 247 GSN 249 (520)
Q Consensus 247 gD~ 249 (520)
||.
T Consensus 161 gD~ 163 (394)
T PRK11921 161 NDA 163 (394)
T ss_pred cCc
Confidence 997
No 29
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=98.71 E-value=2.7e-08 Score=92.03 Aligned_cols=143 Identities=18% Similarity=0.066 Sum_probs=84.9
Q ss_pred CCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccccccccccCCCCcccccccccccccccccccccC
Q 009999 13 NFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNV 92 (520)
Q Consensus 13 ~~~sc~ll~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~ 92 (520)
.+.+|++|+.++..||+|||........ . . . .......
T Consensus 4 ~~~n~~li~~~~~~iliD~G~~~~~~~~---------------------------------~-~--~------~~~~~~~ 41 (194)
T PF00753_consen 4 GGSNSYLIEGGDGAILIDTGLDPDFAKE---------------------------------L-E--L------ALLGISG 41 (194)
T ss_dssp EEEEEEEEEETTEEEEESEBSSHHHHHH---------------------------------H-H--H------HHHHHTG
T ss_pred eeEEEEEEEECCEEEEEeCCCCchhhHH---------------------------------h-h--h------hHhhccC
Confidence 4789999999999999999998542100 0 0 0 0122356
Q ss_pred CcccEEEecCC--CCCCchhhhhcccCCceeEEEeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhch
Q 009999 93 SFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLP 170 (520)
Q Consensus 93 ~~id~IlISH~--DH~g~LP~L~~~~~~~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 170 (520)
.+|++|++||. ||+||++.+.+. .....+++....................
T Consensus 42 ~~i~~vi~TH~H~DH~ggl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 94 (194)
T PF00753_consen 42 EDIDAVILTHAHPDHIGGLPELLEA-GPVVIIYSSADAAKAIRPPDRDSASRRG-------------------------- 94 (194)
T ss_dssp GGEEEEEESSSSHHHHTTHHHHHHH-TTEEEEEEHHHHHHHHHHHHHHHHHHHH--------------------------
T ss_pred CCeEEEEECcccccccccccccccc-cceeeeeccccccccccccccccccccc--------------------------
Confidence 78999999999 999999999883 3234444444443332222111110000
Q ss_pred hhhhhhhccCCCCCCCCCCchHHHHHHHHhhceeeccCCeEEeCCCEEEEEEecCCCCccEEEEEEeCCeEEEEecCCCC
Q 009999 171 SALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNF 250 (520)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~~~y~~~~~l~~~~~i~~~~aGH~lGs~~~~I~~~~~~i~Y~sgD~~ 250 (520)
.................. .+........+|..++..+.+..++++++| |||..
T Consensus 95 -------------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlf-tGD~~ 147 (194)
T PF00753_consen 95 -------------------------PAVPPPPIIDEDEDDLEI-GGDRILFIIPGPGHGSDSLIIYLPGGKVLF-TGDLL 147 (194)
T ss_dssp -------------------------HHHESEEEEEETTTEEEE-ETTEEEEEEESSSSSTTEEEEEETTTTEEE-EETTS
T ss_pred -------------------------cccccccceeeecccccc-cccccccceeccccCCcceEEEeCCCcEEE-eeeEe
Confidence 000001122233333444 245555556677777777777778999999 99985
Q ss_pred C
Q 009999 251 A 251 (520)
Q Consensus 251 ~ 251 (520)
.
T Consensus 148 ~ 148 (194)
T PF00753_consen 148 F 148 (194)
T ss_dssp C
T ss_pred c
Confidence 4
No 30
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=98.67 E-value=9e-08 Score=102.52 Aligned_cols=96 Identities=11% Similarity=-0.022 Sum_probs=70.5
Q ss_pred cCCcccEEEecCC--CCCCchhhhhcccCCceeEEEeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhh
Q 009999 91 NVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELEL 168 (520)
Q Consensus 91 ~~~~id~IlISH~--DH~g~LP~L~~~~~~~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 168 (520)
+..+||+|++||. ||+|++|.|.+.. .+.+||+++.+.++.. ...
T Consensus 68 ~~~~Id~IilTH~H~DH~Ggl~~Ll~~~-p~a~V~~s~~~~~~l~----~~~---------------------------- 114 (479)
T PRK05452 68 DLADIDYIVINHAEEDHAGALTELMAQI-PDTPIYCTANAIDSIN----GHH---------------------------- 114 (479)
T ss_pred CHhhCCEEEeCCCCcchhchHHHHHHHC-CCCEEEECHHHHHHHH----Hhh----------------------------
Confidence 4568999999999 9999999998732 2689999998875321 100
Q ss_pred chhhhhhhhccCCCCCCCCCCchHHHHHHHHhhceeeccCCeEEeCCCEEEEEEec--CCCCccEEEEEEeCCeEEEEec
Q 009999 169 LPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS--GLDIGACNWIISGAKGNIAYIS 246 (520)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~~~y~~~~~l~~~~~i~~~~a--GH~lGs~~~~I~~~~~~i~Y~s 246 (520)
. .+. .+++.++.++.+.++++.+++++.+ +|..|+..+.+. +.+++| |
T Consensus 115 -------------~--~~~------------~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pgs~~~y~~--~~~vLF-s 164 (479)
T PRK05452 115 -------------H--HPE------------WNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLT--GDAVLF-S 164 (479)
T ss_pred -------------c--CCc------------CeEEEeCCCCEEecCCCcEEEEEECCCCCCCCceEEEEc--CCCEEE-e
Confidence 0 001 1456788899999964567777666 599999988875 468999 9
Q ss_pred CCC
Q 009999 247 GSN 249 (520)
Q Consensus 247 gD~ 249 (520)
||.
T Consensus 165 gD~ 167 (479)
T PRK05452 165 NDA 167 (479)
T ss_pred ccc
Confidence 997
No 31
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=98.49 E-value=2.7e-08 Score=106.59 Aligned_cols=61 Identities=16% Similarity=0.160 Sum_probs=49.3
Q ss_pred CCEEEEEEecCCCCccEEEEEEeC-CeEEEEecCCCCCCCCCCccccccCCCCCEEEEcCCCCCCCcccCCCCccccCCC
Q 009999 215 GILIIKAFSSGLDIGACNWIISGA-KGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNN 293 (520)
Q Consensus 215 ~~~~i~~~~aGH~lGs~~~~I~~~-~~~i~Y~sgD~~~~~~~~~~~~~~~~~~DvLI~~~~~~~~~~~~~~~estyg~~~ 293 (520)
+...|...++-|+.-|++..|+.. +.+|+| |||+.++.... ....++|+||+ |+|.-|..
T Consensus 594 ~l~~i~tc~viHCp~syg~~i~~~~~~Ki~Y-SGDTrP~~~~v----~~g~datlLIH--------------EAT~ED~l 654 (746)
T KOG2121|consen 594 GLESIQTCPVIHCPQSYGCSITHGSGWKIVY-SGDTRPCEDLV----KAGKDATLLIH--------------EATLEDDL 654 (746)
T ss_pred CceeEEecCcEecChhhceeEecccceEEEE-cCCCCCchhHh----hhccCCceEEe--------------ehhhchhH
Confidence 578999999999999999999865 579999 99997644332 34679999999 88886654
Q ss_pred c
Q 009999 294 N 294 (520)
Q Consensus 294 ~ 294 (520)
.
T Consensus 655 ~ 655 (746)
T KOG2121|consen 655 E 655 (746)
T ss_pred H
Confidence 4
No 32
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=98.47 E-value=1.2e-06 Score=80.34 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=43.5
Q ss_pred ceeeccCCeEEeCCCEEEEEEecCCC-------CccEEEEEEeCCeEEEEecCCCCCCCCCCccccccCCCCCEEEE
Q 009999 202 VQTLRFGEEACYNGILIIKAFSSGLD-------IGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILY 271 (520)
Q Consensus 202 i~~~~y~~~~~l~~~~~i~~~~aGH~-------lGs~~~~I~~~~~~i~Y~sgD~~~~~~~~~~~~~~~~~~DvLI~ 271 (520)
++.+..++.+++ ++++|+.+++.|. .+.++|.|+.++.+|++ .||+..... ........++|++++
T Consensus 62 ~~vv~~~~~~~~-~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g~~i~~-~Gd~~~~~~--~~~~~~~~~vDvl~~ 134 (163)
T PF13483_consen 62 IHVVAPGGEYRF-GGFKITAVPAYHDGPGGHPRGENVGYLIEVGGVTIYH-AGDTGFPPD--DEQLKQLGKVDVLFL 134 (163)
T ss_dssp SEEE-TTEEEEC-TTEEEEEEEEEE-STGTS-TTCCEEEEEEETTEEEEE--TT--S-----HHHHHHH-S-SEEEE
T ss_pred cEEEccceEEEE-eeeEEEEEeeeccccCCCCcCCeEEEEEEeCCCEEEE-ECCCccCCC--HHHHhcccCCCEEEe
Confidence 455666778888 4899999999874 34799999999999999 999864211 111234458999999
No 33
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=98.46 E-value=2.2e-07 Score=88.94 Aligned_cols=87 Identities=25% Similarity=0.278 Sum_probs=64.6
Q ss_pred CeEEEcCCCC--CC-----CCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccccccccccCCCCccc
Q 009999 1 MKFTCLCQGG--GF-----NFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDAND 73 (520)
Q Consensus 1 mkl~~lGg~~--~~-----~~~sc~ll~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (520)
|++|++=.-. .. -.|-+++|+.++.+||+|.|.....++. |
T Consensus 1 mkitvl~dn~~~~~~~f~a~hGfS~LVE~~~~riLFDtG~~~~~ll~--------------------N------------ 48 (259)
T COG1237 1 MKITVLVDNRAGARPGFRAEHGFSALVEDEGTRILFDTGTDSDVLLH--------------------N------------ 48 (259)
T ss_pred CeEEEEEcCCCccCCcccccCceEEEEEcCCeEEEEeCCCCcHHHHH--------------------H------------
Confidence 6777773320 01 1477899999999999999987443220 0
Q ss_pred ccccccccccccccccccCCcccEEEecCC--CCCCchhhhhcccCCceeEEEeHHHHH
Q 009999 74 LIFAEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAAR 130 (520)
Q Consensus 74 l~~~~p~~~~~~~~~~~~~~~id~IlISH~--DH~g~LP~L~~~~~~~~~Iy~T~~T~~ 130 (520)
+ ..+++++.+||+|+|||- ||+|||+++.+...-..|||+++..+.
T Consensus 49 a-----------~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~af~ 96 (259)
T COG1237 49 A-----------RLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDAFK 96 (259)
T ss_pred H-----------HHcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHHHh
Confidence 1 235678899999999999 999999999874445779999988766
No 34
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=98.45 E-value=1.8e-07 Score=65.42 Aligned_cols=39 Identities=5% Similarity=-0.051 Sum_probs=33.5
Q ss_pred ceeeeEEEEecccCCCCHHHHHHhhhhcCCCCceeEeeecc
Q 009999 473 KPISMKASESSTLTKDTATEVSSVSRGMEDSCQFFRCYFIL 513 (520)
Q Consensus 473 ~~v~~~v~~~~~s~Had~~~l~~~i~~~~p~~~~~~~~~~~ 513 (520)
.+++|+|..+.||+|||+++|++|++.++|+ .|+++||.
T Consensus 3 i~v~a~v~~~~fSgHad~~~L~~~i~~~~p~--~vilVHGe 41 (43)
T PF07521_consen 3 IPVRARVEQIDFSGHADREELLEFIEQLNPR--KVILVHGE 41 (43)
T ss_dssp EE--SEEEESGCSSS-BHHHHHHHHHHHCSS--EEEEESSE
T ss_pred EEeEEEEEEEeecCCCCHHHHHHHHHhcCCC--EEEEecCC
Confidence 5789999999999999999999999999997 78999985
No 35
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=98.36 E-value=9.7e-07 Score=87.80 Aligned_cols=40 Identities=28% Similarity=0.453 Sum_probs=33.4
Q ss_pred CCcccEEEecCC--CCCCchhhhhcccCCceeEEEeHHHHHHHH
Q 009999 92 VSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQ 133 (520)
Q Consensus 92 ~~~id~IlISH~--DH~g~LP~L~~~~~~~~~Iy~T~~T~~l~~ 133 (520)
.+.+|+||+||. ||+.|++.|.+ ++..++|++..|.....
T Consensus 60 ~~~idai~~TH~H~DHi~Gl~~l~~--~~~~~~~~~~~~~~~~~ 101 (269)
T COG1235 60 VSDLDAILLTHEHSDHIQGLDDLRR--AYTLPIYVNPGTLRAST 101 (269)
T ss_pred ccccCeEEEecccHHhhcChHHHHH--HhcCCcccccceecccc
Confidence 358999999999 99999999988 56678888888776543
No 36
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=98.36 E-value=1.2e-06 Score=86.09 Aligned_cols=83 Identities=14% Similarity=0.265 Sum_probs=61.3
Q ss_pred cccEEEecCC--CCCCchhhhhcccCCceeEEEeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchh
Q 009999 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (520)
Q Consensus 94 ~id~IlISH~--DH~g~LP~L~~~~~~~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 171 (520)
.+++|++||. ||+||++.|.+.+ ..+||+++.+. + .
T Consensus 43 ~l~~Il~TH~H~DHigG~~~l~~~~--~~~V~~~~~~~----------~---~--------------------------- 80 (248)
T TIGR03413 43 TLTAILLTHHHHDHVGGVAELLEAF--PAPVYGPAEER----------I---P--------------------------- 80 (248)
T ss_pred eeeEEEeCCCCccccCCHHHHHHHC--CCeEEeccccc----------C---C---------------------------
Confidence 5889999998 9999999998743 47899886530 0 0
Q ss_pred hhhhhhccCCCCCCCCCCchHHHHHHHHhhceeeccCCeEEeCCCEEEEEEe-cCCCCccEEEEEEeCCeEEEEecCCCC
Q 009999 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS-SGLDIGACNWIISGAKGNIAYISGSNF 250 (520)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~~~y~~~~~l~~~~~i~~~~-aGH~lGs~~~~I~~~~~~i~Y~sgD~~ 250 (520)
+ ..+.+..++.+.++ +.+++.+. .||..|+.+|.+. +.+++| |||+-
T Consensus 81 ----------~------------------~~~~v~~g~~~~~g-~~~i~v~~tpGHT~g~i~~~~~--~~~~lf-tGDtl 128 (248)
T TIGR03413 81 ----------G------------------ITHPVKDGDTVTLG-GLEFEVLAVPGHTLGHIAYYLP--DSPALF-CGDTL 128 (248)
T ss_pred ----------C------------------CcEEeCCCCEEEEC-CEEEEEEECCCCCcccEEEEEC--CCCEEE-EcCcc
Confidence 0 11345567788884 67777765 4799999999886 367999 99974
No 37
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=98.35 E-value=2.3e-06 Score=95.61 Aligned_cols=158 Identities=12% Similarity=0.147 Sum_probs=94.8
Q ss_pred eEEEcCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccccccccccCCCCccccccccccc
Q 009999 2 KFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWY 81 (520)
Q Consensus 2 kl~~lGg~~~~~~~sc~ll~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~ 81 (520)
+++++--| .|.|++|+.++..+|+|||.....- ..+. ..+ .|+.
T Consensus 441 ~v~~lDVG----qGdaili~~~~~~iLIDtG~~~~~~------~~~~-----------------------~~l---~p~L 484 (662)
T TIGR00361 441 QVDMLDVG----QGLAMFIGANGKGILYDTGEPWREG------SLGE-----------------------KVI---IPFL 484 (662)
T ss_pred EEEEEecC----CceEEEEEECCeEEEEeCCCCCCCC------CccH-----------------------HHH---HHHH
Confidence 35555443 3679999999999999999653310 0000 001 2222
Q ss_pred ccccccccccCCcccEEEecCC--CCCCchhhhhcccCCceeEEEeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcc
Q 009999 82 KTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQ 159 (520)
Q Consensus 82 ~~~~~~~~~~~~~id~IlISH~--DH~g~LP~L~~~~~~~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~ 159 (520)
+ .. ... ||+++|||. ||+||++.+.+... ...||.+... .+ .
T Consensus 485 ~----~~--Gi~-ID~lilTH~d~DHiGGl~~ll~~~~-v~~i~~~~~~--------~~-----~--------------- 528 (662)
T TIGR00361 485 T----AK--GIK-LEALILSHADQDHIGGAEIILKHHP-VKRLVIPKGF--------VE-----E--------------- 528 (662)
T ss_pred H----Hc--CCC-cCEEEECCCchhhhCcHHHHHHhCC-ccEEEeccch--------hh-----C---------------
Confidence 1 12 344 999999999 99999999987322 2357654321 00 0
Q ss_pred chhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhhceeeccCCeEEeCCCEEEEEEecCC------CCccEEE
Q 009999 160 WMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGL------DIGACNW 233 (520)
Q Consensus 160 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~~~y~~~~~l~~~~~i~~~~aGH------~lGs~~~ 233 (520)
+ ...+.+..|+.+++ ++++++.+.-+. --.|+.+
T Consensus 529 ----------------------~-----------------~~~~~~~~G~~~~~-~~~~~~vL~P~~~~~~~~N~~S~vl 568 (662)
T TIGR00361 529 ----------------------G-----------------VAIEECKRGDVWQW-QGLQFHVLSPEAPDPASKNNHSCVL 568 (662)
T ss_pred ----------------------C-----------------CceEecCCCCEEeE-CCEEEEEECCCCccCCCCCCCceEE
Confidence 0 01223445667777 468888774322 2368999
Q ss_pred EEEeCCeEEEEecCCCCCCCCCCccccccCCCCCEEEEc
Q 009999 234 IISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 272 (520)
Q Consensus 234 ~I~~~~~~i~Y~sgD~~~~~~~~~~~~~~~~~~DvLI~~ 272 (520)
+++.++.++++ |||..........+....-++|+|...
T Consensus 569 ~i~~~~~~~L~-tGD~~~~~E~~l~~~~~~l~~dvLk~~ 606 (662)
T TIGR00361 569 WVDDGGNSWLL-TGDLEAEGEQEVMRVFPNIKADVLQVG 606 (662)
T ss_pred EEEECCeeEEE-ecCCCHHHHHHHHhcccCcCccEEEeC
Confidence 99999999999 999965321111111112368999984
No 38
>PLN02469 hydroxyacylglutathione hydrolase
Probab=98.25 E-value=6e-06 Score=81.44 Aligned_cols=86 Identities=15% Similarity=0.215 Sum_probs=58.8
Q ss_pred cccEEEecCC--CCCCchhhhhcccCCceeEEEeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchh
Q 009999 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (520)
Q Consensus 94 ~id~IlISH~--DH~g~LP~L~~~~~~~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 171 (520)
.|++||+||. ||+||++.|.+.+. +.+||+.... ..
T Consensus 46 ~l~~Il~TH~H~DH~gG~~~l~~~~~-~~~V~~~~~~----------~~------------------------------- 83 (258)
T PLN02469 46 KIKLVLTTHHHWDHAGGNEKIKKLVP-GIKVYGGSLD----------NV------------------------------- 83 (258)
T ss_pred cccEEEecCCCCccccCHHHHHHHCC-CCEEEEechh----------cC-------------------------------
Confidence 6899999999 99999999987322 5789986421 00
Q ss_pred hhhhhhccCCCCCCCCCCchHHHHHHHHhhceeeccCCeEEeCCCEEEEEEe-cCCCCccEEEEEEeC--CeEEEEecCC
Q 009999 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS-SGLDIGACNWIISGA--KGNIAYISGS 248 (520)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~~~y~~~~~l~~~~~i~~~~-aGH~lGs~~~~I~~~--~~~i~Y~sgD 248 (520)
.+ ..+.+.-++.+.++++++++.+. -||..|+..|.+... ...++| |||
T Consensus 84 ---------~~------------------~~~~v~~gd~i~lg~~~~~~vi~tPGHT~ghi~~~~~~~~~~~~~lF-tGD 135 (258)
T PLN02469 84 ---------KG------------------CTHPVENGDKLSLGKDVNILALHTPCHTKGHISYYVTGKEGEDPAVF-TGD 135 (258)
T ss_pred ---------CC------------------CCeEeCCCCEEEECCceEEEEEECCCCCCCCEEEEeccCCCCCCEEE-ecC
Confidence 00 01234556777884334444432 599999999998642 346899 999
Q ss_pred C
Q 009999 249 N 249 (520)
Q Consensus 249 ~ 249 (520)
+
T Consensus 136 t 136 (258)
T PLN02469 136 T 136 (258)
T ss_pred c
Confidence 7
No 39
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=98.17 E-value=6.4e-06 Score=84.12 Aligned_cols=130 Identities=15% Similarity=0.066 Sum_probs=91.0
Q ss_pred CCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccccccccccCCCCcccccccccccccccccccccC
Q 009999 13 NFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNV 92 (520)
Q Consensus 13 ~~~sc~ll~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~ 92 (520)
++-++||+. ++..+|+|-+-.--. ..| + ..+ ...+|+
T Consensus 34 ttyNSYLI~-~~k~aLID~~~~~~~-~~~--------------------------------l-~~l--------~~~id~ 70 (388)
T COG0426 34 TTYNSYLIV-GDKTALIDTVGEKFF-DEY--------------------------------L-ENL--------SKYIDP 70 (388)
T ss_pred ceeeeEEEe-CCcEEEECCCCcchH-HHH--------------------------------H-HHH--------HhhcCh
Confidence 478899999 999999998865211 000 0 111 123578
Q ss_pred CcccEEEecCC--CCCCchhhhhcccCCceeEEEeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhch
Q 009999 93 SFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLP 170 (520)
Q Consensus 93 ~~id~IlISH~--DH~g~LP~L~~~~~~~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 170 (520)
.+||.|+++|. ||+|+||.|.+. --+++|+||...+++.+.+..+
T Consensus 71 k~iDYIi~~H~ePDhsg~l~~ll~~-~p~a~ii~s~~~~~~L~~~~~~-------------------------------- 117 (388)
T COG0426 71 KEIDYIIVNHTEPDHSGSLPELLEL-APNAKIICSKLAARFLKGFYHD-------------------------------- 117 (388)
T ss_pred hcCeEEEECCCCcchhhhHHHHHHh-CCCCEEEeeHHHHHHHHHhcCC--------------------------------
Confidence 89999999999 999999999973 3388999999988865542111
Q ss_pred hhhhhhhccCCCCCCCCCCchHHHHHHHHhhceeeccCCeEEeCCCEEEEEEec--CCCCccEEEEEEeCCeEEEEecCC
Q 009999 171 SALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS--GLDIGACNWIISGAKGNIAYISGS 248 (520)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~~~y~~~~~l~~~~~i~~~~a--GH~lGs~~~~I~~~~~~i~Y~sgD 248 (520)
+ ..++.++-|+.+.++ +-+++|+++ =|-+|+..... ...+|+| |+|
T Consensus 118 -------------------~---------~~~~ivk~Gd~ldlG-g~tL~Fi~ap~LHWPd~m~TYd--~~~kILF-S~D 165 (388)
T COG0426 118 -------------------P---------EWFKIVKTGDTLDLG-GHTLKFIPAPFLHWPDTMFTYD--PEDKILF-SCD 165 (388)
T ss_pred -------------------c---------cceeecCCCCEeccC-CcEEEEEeCCCCCCCCceeEee--cCCcEEE-ccc
Confidence 1 126777889999995 777776654 67777654332 2357999 999
Q ss_pred CC
Q 009999 249 NF 250 (520)
Q Consensus 249 ~~ 250 (520)
..
T Consensus 166 ~f 167 (388)
T COG0426 166 AF 167 (388)
T ss_pred cc
Confidence 74
No 40
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=98.13 E-value=8.8e-06 Score=78.89 Aligned_cols=45 Identities=18% Similarity=0.326 Sum_probs=34.0
Q ss_pred eeeccCCeEEeCC-CEEEEEEecCCCCccEEEEEEeCCeEEEEecCCCCC
Q 009999 203 QTLRFGEEACYNG-ILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFA 251 (520)
Q Consensus 203 ~~~~y~~~~~l~~-~~~i~~~~aGH~lGs~~~~I~~~~~~i~Y~sgD~~~ 251 (520)
.....++.+.+++ ++++...| ||..|+.+|.++.++ ++| +||.-.
T Consensus 125 ~~~~~~~~~~~~~~~~~~i~tp-GHT~g~~~~~~~~~~--~l~-~gD~~~ 170 (252)
T COG0491 125 RALEDGDELDLGGLELEVLHTP-GHTPGHIVFLLEDGG--VLF-TGDTLF 170 (252)
T ss_pred eecCCCCEEEecCeEEEEEECC-CCCCCeEEEEECCcc--EEE-ecceec
Confidence 3444566777742 38888888 999999999998655 888 999743
No 41
>PLN02398 hydroxyacylglutathione hydrolase
Probab=98.10 E-value=2e-05 Score=79.95 Aligned_cols=86 Identities=14% Similarity=0.111 Sum_probs=61.0
Q ss_pred CcccEEEecCC--CCCCchhhhhcccCCceeEEEeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhch
Q 009999 93 SFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLP 170 (520)
Q Consensus 93 ~~id~IlISH~--DH~g~LP~L~~~~~~~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 170 (520)
.+|++||+||. ||+||+..|.+.+ ..+||++....+. + .
T Consensus 120 ~~L~~ILlTH~H~DH~GG~~~L~~~~--ga~V~g~~~~~~~--------i---~-------------------------- 160 (329)
T PLN02398 120 RNLTYILNTHHHYDHTGGNLELKARY--GAKVIGSAVDKDR--------I---P-------------------------- 160 (329)
T ss_pred CCceEEEECCCCchhhCCHHHHHHhc--CCEEEEehHHhhh--------c---c--------------------------
Confidence 36899999999 9999999998743 5799998653210 0 0
Q ss_pred hhhhhhhccCCCCCCCCCCchHHHHHHHHhhceeeccCCeEEeCCCEEEEEEec-CCCCccEEEEEEeCCeEEEEecCCC
Q 009999 171 SALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWIISGAKGNIAYISGSN 249 (520)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~~~y~~~~~l~~~~~i~~~~a-GH~lGs~~~~I~~~~~~i~Y~sgD~ 249 (520)
+ .-+.+.-++.+.++ +.+++.+.+ ||..|..+|.+. +..++| |||+
T Consensus 161 -----------~------------------~d~~v~dGd~i~lg-g~~l~vi~tPGHT~GhI~~~~~--~~~vLF-tGDt 207 (329)
T PLN02398 161 -----------G------------------IDIVLKDGDKWMFA-GHEVLVMETPGHTRGHISFYFP--GSGAIF-TGDT 207 (329)
T ss_pred -----------C------------------CcEEeCCCCEEEEC-CeEEEEEeCCCcCCCCEEEEEC--CCCEEE-ECCC
Confidence 0 01234557777774 667766544 999999999875 346899 9997
Q ss_pred C
Q 009999 250 F 250 (520)
Q Consensus 250 ~ 250 (520)
-
T Consensus 208 L 208 (329)
T PLN02398 208 L 208 (329)
T ss_pred c
Confidence 4
No 42
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=98.08 E-value=1.1e-05 Score=79.35 Aligned_cols=82 Identities=15% Similarity=0.199 Sum_probs=56.9
Q ss_pred cccEEEecCC--CCCCchhhhhcccCCceeEEEeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchh
Q 009999 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (520)
Q Consensus 94 ~id~IlISH~--DH~g~LP~L~~~~~~~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 171 (520)
++++|++||. ||+||+..|.+.++ ..+||++..+..
T Consensus 45 ~l~~IllTH~H~DHigG~~~l~~~~~-~~~V~~~~~~~~----------------------------------------- 82 (251)
T PRK10241 45 QPEAIFLTHHHHDHVGGVKELVEKFP-QIVVYGPQETQD----------------------------------------- 82 (251)
T ss_pred ccCEEEeCCCCchhhccHHHHHHHCC-CCEEEecccccc-----------------------------------------
Confidence 4689999999 99999999987332 478998643210
Q ss_pred hhhhhhccCCCCCCCCCCchHHHHHHHHhhceeeccCCeEEeCCCEEEEEEe-cCCCCccEEEEEEeCCeEEEEecCCCC
Q 009999 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS-SGLDIGACNWIISGAKGNIAYISGSNF 250 (520)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~~~y~~~~~l~~~~~i~~~~-aGH~lGs~~~~I~~~~~~i~Y~sgD~~ 250 (520)
.+ ..+.+..++.+.+. +.+++.+. -||..|+..|.. ..++| |||+-
T Consensus 83 ---------~~------------------~~~~v~~g~~i~ig-~~~~~vi~tPGHT~ghi~~~~----~~~lF-tGDtl 129 (251)
T PRK10241 83 ---------KG------------------TTQVVKDGETAFVL-GHEFSVFATPGHTLGHICYFS----KPYLF-CGDTL 129 (251)
T ss_pred ---------cC------------------CceEeCCCCEEEeC-CcEEEEEEcCCCCccceeeec----CCcEE-EcCee
Confidence 00 11234456777774 56666654 789999999964 24799 99973
No 43
>PRK11539 ComEC family competence protein; Provisional
Probab=98.06 E-value=1.6e-05 Score=90.16 Aligned_cols=154 Identities=16% Similarity=0.128 Sum_probs=91.5
Q ss_pred eEEEcCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccccccccccCCCCccccccccccc
Q 009999 2 KFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWY 81 (520)
Q Consensus 2 kl~~lGg~~~~~~~sc~ll~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~ 81 (520)
+++++-.| .|.|.+++.++..+|+|+|..... +. .+. +.+ .|+.
T Consensus 502 ~v~~lDVG----qG~a~li~~~~~~lLiDtG~~~~~---~~---~~~-----------------------~~i---~P~L 545 (755)
T PRK11539 502 RVDMLDVG----HGLAVVIERNGKAILYDTGNAWPT---GD---SAQ-----------------------QVI---IPWL 545 (755)
T ss_pred EEEEEEcc----CceEEEEEECCEEEEEeCCCCCCC---Cc---chH-----------------------HHH---HHHH
Confidence 45555444 467899999999999999976331 00 000 011 2222
Q ss_pred ccccccccccCCcccEEEecCC--CCCCchhhhhcccCCceeEEEeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcc
Q 009999 82 KTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQ 159 (520)
Q Consensus 82 ~~~~~~~~~~~~~id~IlISH~--DH~g~LP~L~~~~~~~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~ 159 (520)
+ .. .. ++|.|+|||. ||+||++.+.+... ..+||.+.... +
T Consensus 546 ~----~~--Gi-~lD~lilSH~d~DH~GGl~~Ll~~~~-~~~i~~~~~~~--------~--------------------- 588 (755)
T PRK11539 546 R----WH--GL-TPEGIILSHEHLDHRGGLASLLHAWP-MAWIRSPLNWA--------N--------------------- 588 (755)
T ss_pred H----Hc--CC-CcCEEEeCCCCcccCCCHHHHHHhCC-cceeeccCccc--------C---------------------
Confidence 1 12 23 4999999999 99999999987322 35677642100 0
Q ss_pred chhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhhceeeccCCeEEeCCCEEEEEE-ecCCC-----CccEEE
Q 009999 160 WMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAF-SSGLD-----IGACNW 233 (520)
Q Consensus 160 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~~~y~~~~~l~~~~~i~~~-~aGH~-----lGs~~~ 233 (520)
..+...++.++. ++++++.+ |.+|. -+||.+
T Consensus 589 ------------------------------------------~~~~~~g~~~~~-~~~~~~vL~P~~~~~~~~N~~S~Vl 625 (755)
T PRK11539 589 ------------------------------------------HLPCVRGEQWQW-QGLTFSVHWPLEQSNDAGNNDSCVI 625 (755)
T ss_pred ------------------------------------------cccccCCCeEeE-CCEEEEEEecCcccCCCCCCccEEE
Confidence 000122455556 36777665 43443 458999
Q ss_pred EEEeCCeEEEEecCCCCCCCCCCccc-cccCCCCCEEEEc
Q 009999 234 IISGAKGNIAYISGSNFASGHAMDFD-YRAIQGSDLILYS 272 (520)
Q Consensus 234 ~I~~~~~~i~Y~sgD~~~~~~~~~~~-~~~~~~~DvLI~~ 272 (520)
+++.++.++++ |||........... ....-++|+|...
T Consensus 626 ~i~~~~~~~Ll-tGDi~~~~E~~Ll~~~~~~l~~dvL~vp 664 (755)
T PRK11539 626 RVDDGKHSILL-TGDLEAQAEQKLLSRYWQQLAATLLQVP 664 (755)
T ss_pred EEEECCEEEEE-EeCCChHHHHHHHhcCccCcCCCEEEeC
Confidence 99999999999 99986432111111 1111268999983
No 44
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=97.92 E-value=0.00033 Score=71.10 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=71.6
Q ss_pred CcccEEEecCC--CCCCchhhhhcccC----CceeEEEeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHh
Q 009999 93 SFIDVVLISSP--MGMLGLPFLTRMEG----FSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEEL 166 (520)
Q Consensus 93 ~~id~IlISH~--DH~g~LP~L~~~~~----~~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 166 (520)
..|.+.||||+ ||+.||=.-..... -..+||+.+.|.+..+ +. ++ +|..|+.+
T Consensus 78 ~~I~~ylItH~HLDHi~gLvinsp~~~~~~~~~K~i~gl~~ti~alk----~h---------iF--------N~~iWPNl 136 (335)
T PF02112_consen 78 NHIKGYLITHPHLDHIAGLVINSPEDYLPNSSPKTIYGLPSTIEALK----NH---------IF--------NDIIWPNL 136 (335)
T ss_pred HhhheEEecCCchhhHHHHHhcCcccccccCCCCcEEECHHHHHHHH----Hc---------cc--------CCccCCCC
Confidence 47899999999 99999843333111 1447999999987543 21 12 46777766
Q ss_pred hhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhhceeeccCCeEEeC------------CCEEEEEEecCCCCc-----
Q 009999 167 ELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYN------------GILIIKAFSSGLDIG----- 229 (520)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~~~y~~~~~l~------------~~~~i~~~~aGH~lG----- 229 (520)
...+.. .+.. ..++..+++++...+. .++.|++++..|..+
T Consensus 137 ~~~~~~--------------~~~~--------~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~~v~~~~l~H~~~~~~~~ 194 (335)
T PF02112_consen 137 SDEGEG--------------DYLY--------KYRYFDLSPGELIPLNNTTLSVIPNEFPNSSSVTPFPLSHGNSVSSPV 194 (335)
T ss_pred CCcCcc--------------ccee--------eeeeeeccccceeeccccccccccccccccccceeeecCCCCcccCCC
Confidence 432211 0000 0122333333322221 146778899999654
Q ss_pred -cEEEEEEeCC--eEEEEecCCCCCC
Q 009999 230 -ACNWIISGAK--GNIAYISGSNFAS 252 (520)
Q Consensus 230 -s~~~~I~~~~--~~i~Y~sgD~~~~ 252 (520)
|++|.|+.+. +.|+| -||++..
T Consensus 195 ~SsAfli~~~~t~~~il~-fGD~e~D 219 (335)
T PF02112_consen 195 YSSAFLIRDNITGDEILF-FGDTEPD 219 (335)
T ss_pred cceEEEEEeCCCCCEEEE-EeCCCCC
Confidence 7999998764 89999 8999764
No 45
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=97.90 E-value=0.00019 Score=70.90 Aligned_cols=66 Identities=18% Similarity=0.092 Sum_probs=45.7
Q ss_pred hceeeccCCeEEeCCCEEEEEEecCCC-------------CccEEEEEEeCCeEEEEecCCCCCCCCCCccccccCCCCC
Q 009999 201 KVQTLRFGEEACYNGILIIKAFSSGLD-------------IGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSD 267 (520)
Q Consensus 201 ~i~~~~y~~~~~l~~~~~i~~~~aGH~-------------lGs~~~~I~~~~~~i~Y~sgD~~~~~~~~~~~~~~~~~~D 267 (520)
+++.+.+++.+++ ++++|++.++-|. .+.++|+|+.++.+|.+ .||++.. .. ........+|
T Consensus 101 ~~~~~~~~~~~~~-~~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~~g~~iyh-~GDt~~~-~~--~~~~~~~~~D 175 (258)
T COG2220 101 RVHELGWGDVIEL-GDLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIETPGGRVYH-AGDTGYL-FL--IIEELDGPVD 175 (258)
T ss_pred eEEeecCCceEEe-cCcEEEEEEeecccccccCCCCccccCCceEEEEEeCCceEEe-ccCccHH-HH--hhhhhcCCcc
Confidence 5777888888888 4788766666552 23678999999999988 9999761 11 1111222379
Q ss_pred EEEE
Q 009999 268 LILY 271 (520)
Q Consensus 268 vLI~ 271 (520)
++++
T Consensus 176 vall 179 (258)
T COG2220 176 VALL 179 (258)
T ss_pred EEEe
Confidence 9999
No 46
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=97.79 E-value=0.00018 Score=71.80 Aligned_cols=120 Identities=12% Similarity=0.223 Sum_probs=72.7
Q ss_pred ccCCcccEEEecCC--CCCCchhhhhcccCCceeEEEeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhh
Q 009999 90 WNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELE 167 (520)
Q Consensus 90 ~~~~~id~IlISH~--DH~g~LP~L~~~~~~~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 167 (520)
..+.+||.+++||+ ||+||++-+.+.+.+ ..+|+..+...-....+++.
T Consensus 86 ~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~v-~~~~i~~~~~~~~~~~~~~~---------------------------- 136 (293)
T COG2333 86 LGVRKLDQLILTHPDADHIGGLDEVLKTIKV-PELWIYAGSDSTSTFVLRDA---------------------------- 136 (293)
T ss_pred cCCccccEEEeccCCccccCCHHHHHhhCCC-CcEEEeCCCCccchhhhhhc----------------------------
Confidence 35678999999999 999999999984433 23555433322110001110
Q ss_pred hchhhhhhhhccCCCCCCCCCCchHHHHHHHHhhceeeccCCeEEeCCCEEEEEE-ecCC-----CCccEEEEEEeCCeE
Q 009999 168 LLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAF-SSGL-----DIGACNWIISGAKGN 241 (520)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~~~y~~~~~l~~~~~i~~~-~aGH-----~lGs~~~~I~~~~~~ 241 (520)
+ ..+....-|+...+. ++.++.+ |.+. .--||..+++.++.+
T Consensus 137 --------------~-----------------~~~~~~~~G~~~~~~-~~~f~vl~P~~~~~~~~N~~S~Vl~v~~g~~s 184 (293)
T COG2333 137 --------------G-----------------IPVRSCKAGDSWQWG-GVVFQVLSPVGGVSDDLNNDSCVLRVTFGGNS 184 (293)
T ss_pred --------------C-----------------CceeccccCceEEEC-CeEEEEEcCCccccccccCcceEEEEEeCCee
Confidence 0 122333446677774 6777764 3433 225899999999999
Q ss_pred EEEecCCCCCCCCCCccc-cccCCCCCEEEEc
Q 009999 242 IAYISGSNFASGHAMDFD-YRAIQGSDLILYS 272 (520)
Q Consensus 242 i~Y~sgD~~~~~~~~~~~-~~~~~~~DvLI~~ 272 (520)
+++ |||........... ...+ .+|+|...
T Consensus 185 ~Ll-TGD~e~~~E~~l~~~~~~l-~~dVLkV~ 214 (293)
T COG2333 185 FLL-TGDLEEKGEKLLKKYGPDL-RADVLKVG 214 (293)
T ss_pred EEE-ecCCCchhHHHHHhhCCCc-cceEEEec
Confidence 999 99996533211111 1122 58999984
No 47
>PLN02962 hydroxyacylglutathione hydrolase
Probab=97.72 E-value=0.00012 Score=71.74 Aligned_cols=43 Identities=14% Similarity=0.405 Sum_probs=29.8
Q ss_pred eccCCeEEeCCCEEEEEE-ecCCCCccEEEEEEeC----CeEEEEecCCC
Q 009999 205 LRFGEEACYNGILIIKAF-SSGLDIGACNWIISGA----KGNIAYISGSN 249 (520)
Q Consensus 205 ~~y~~~~~l~~~~~i~~~-~aGH~lGs~~~~I~~~----~~~i~Y~sgD~ 249 (520)
+.-++.+.++ +++++.+ --||..|+..|.+..+ ..+++| |||+
T Consensus 104 l~~g~~i~~g-~~~l~vi~tPGHT~g~v~~~~~d~~~~~~~~~lf-tGD~ 151 (251)
T PLN02962 104 VEPGDKIYFG-DLYLEVRATPGHTAGCVTYVTGEGPDQPQPRMAF-TGDA 151 (251)
T ss_pred eCCCCEEEEC-CEEEEEEECCCCCcCcEEEEeccCCCCCccceEE-ECCe
Confidence 4456777774 5555442 2499999999987532 346899 9997
No 48
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=97.54 E-value=0.0058 Score=58.45 Aligned_cols=65 Identities=11% Similarity=0.153 Sum_probs=41.2
Q ss_pred ccCCeEEeCCCEEEEEE-ecCCCC-cc-----EEEEEEeCCeEEEEecCCC-CCCCCCCccccccCCCCCEEEEcC
Q 009999 206 RFGEEACYNGILIIKAF-SSGLDI-GA-----CNWIISGAKGNIAYISGSN-FASGHAMDFDYRAIQGSDLILYSD 273 (520)
Q Consensus 206 ~y~~~~~l~~~~~i~~~-~aGH~l-Gs-----~~~~I~~~~~~i~Y~sgD~-~~~~~~~~~~~~~~~~~DvLI~~~ 273 (520)
.-++.+++ |+.+|.+- |.-|.. |+ .++.|+.++.+|+| +.|. ++.... ..+.-.-..+|++|+++
T Consensus 137 ADgk~f~f-G~t~IefS~pvpHG~eGskLGyVl~v~V~dg~~~i~f-aSDvqGp~~~~-~l~~i~e~~P~v~ii~G 209 (304)
T COG2248 137 ADGKTFEF-GGTVIEFSPPVPHGREGSKLGYVLMVAVTDGKSSIVF-ASDVQGPINDE-ALEFILEKRPDVLIIGG 209 (304)
T ss_pred cCCceEEe-CCEEEEecCCCCCCCcccccceEEEEEEecCCeEEEE-cccccCCCccH-HHHHHHhcCCCEEEecC
Confidence 33788999 58999984 566754 33 45666778899999 7777 342211 11111224789999953
No 49
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=96.72 E-value=0.007 Score=59.06 Aligned_cols=43 Identities=16% Similarity=0.337 Sum_probs=36.1
Q ss_pred eccCCeEEeCCCEEEEEEe-cCCCCccEEEEEE-eCCeEEEEecCCC
Q 009999 205 LRFGEEACYNGILIIKAFS-SGLDIGACNWIIS-GAKGNIAYISGSN 249 (520)
Q Consensus 205 ~~y~~~~~l~~~~~i~~~~-aGH~lGs~~~~I~-~~~~~i~Y~sgD~ 249 (520)
+..++.+.+. +++|+.+. -||.-|...|.+. ..+.+.+| |||+
T Consensus 96 ~~~~e~~~~~-g~~v~~l~TPgHT~~hi~~~~~~~~~e~~iF-tGDt 140 (265)
T KOG0813|consen 96 LKDGETVTVG-GLEVRCLHTPGHTAGHICYYVTESTGERAIF-TGDT 140 (265)
T ss_pred CCCCcEEEEC-CEEEEEEeCCCccCCcEEEEeecCCCCCeEE-eCCc
Confidence 5668889995 89999765 5999999999998 56788999 9997
No 50
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=94.95 E-value=0.15 Score=43.34 Aligned_cols=80 Identities=9% Similarity=0.005 Sum_probs=54.6
Q ss_pred CCEEEEecCCCCCcchHHHHHHHHcCCCCCceeec-CCcchhhc----c---CC--CceeeeEEEEecccCCCCHHHHHH
Q 009999 426 EPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLE-NEVDAELA----V---LP--FKPISMKASESSTLTKDTATEVSS 495 (520)
Q Consensus 426 ~p~Vv~as~~~l~~G~s~~~l~~~~~~~~n~iil~-~~~~~~~~----~---~~--~~~v~~~v~~~~~s~Had~~~l~~ 495 (520)
.-.|-+++-+.++......+++.+.....+.|.+- .|...... . .+ ...-+..++.+|+|.|+++.||.+
T Consensus 13 ~t~iHvv~~~~~~~~~l~~~~~~~~~~~~~vi~i~PTgW~~~~~~~~~~~~~~~~~~~~~~~~~~~VPYSeHSSf~EL~~ 92 (110)
T PF07522_consen 13 ETRIHVVPMGQLSKETLEKYLKSLKPRFDPVIGIRPTGWSFSNKKKKSSVSISPSLQSRGNVRIYRVPYSEHSSFSELKE 92 (110)
T ss_pred CCeEEEEECCcCCHHHHHHHHHhhcccCCCeEEEEeCccccccCCCccccccccccccCCCceEEEEecccCCCHHHHHH
Confidence 44566666666776667778887777777777652 22221111 1 11 123356789999999999999999
Q ss_pred hhhhcCCCCc
Q 009999 496 VSRGMEDSCQ 505 (520)
Q Consensus 496 ~i~~~~p~~~ 505 (520)
+++.++|+.+
T Consensus 93 Fv~~l~P~~I 102 (110)
T PF07522_consen 93 FVSFLKPKKI 102 (110)
T ss_pred HHHhcCCcEE
Confidence 9999999955
No 51
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=94.85 E-value=0.03 Score=51.20 Aligned_cols=86 Identities=15% Similarity=0.089 Sum_probs=53.9
Q ss_pred cCCcccEEEecCCCCCCchhhhhcccCCceeEEEeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhch
Q 009999 91 NVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLP 170 (520)
Q Consensus 91 ~~~~id~IlISH~DH~g~LP~L~~~~~~~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 170 (520)
....++.|+|||.||+.+---+.+ .+.++||+...-++.
T Consensus 52 a~ggv~~IvLTn~dHvR~A~~ya~--~~~a~i~~p~~d~~~--------------------------------------- 90 (199)
T PF14597_consen 52 ALGGVAWIVLTNRDHVRAAEDYAE--QTGAKIYGPAADAAQ--------------------------------------- 90 (199)
T ss_dssp HTT--SEEE-SSGGG-TTHHHHHH--HS--EEEEEGGGCCC---------------------------------------
T ss_pred hcCCceEEEEeCChhHhHHHHHHH--HhCCeeeccHHHHhh---------------------------------------
Confidence 346799999999999999877776 356799998654310
Q ss_pred hhhhhhhccCCCCCCCCCCchHHHHHHHHhhceeeccCCeEEeCCCEEEEEEecCCCCccEEEEEEeCCeEEEEecCCC
Q 009999 171 SALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSN 249 (520)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~~~y~~~~~l~~~~~i~~~~aGH~lGs~~~~I~~~~~~i~Y~sgD~ 249 (520)
+|+ .-=+.+.-|+ ++-+|++|-..+-.|+.|..++.++. ++++ |||.
T Consensus 91 ------------------~p~--------~~D~~l~dge--~i~~g~~vi~l~G~ktpGE~ALlled---~vLi-~GDl 137 (199)
T PF14597_consen 91 ------------------FPL--------ACDRWLADGE--EIVPGLWVIHLPGSKTPGELALLLED---RVLI-TGDL 137 (199)
T ss_dssp -------------------SS----------SEEE-TT---BSSTTEEEEEE-SSSSTTEEEEEETT---TEEE-ESSS
T ss_pred ------------------CCC--------CCccccccCC--CccCceEEEEcCCCCCCceeEEEecc---ceEE-ecce
Confidence 011 0012233344 33368999999888999999999984 4788 9995
No 52
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=94.07 E-value=0.1 Score=39.44 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.4
Q ss_pred CCeEEEEECCEEEEE-eCCCCCcc
Q 009999 15 PPCHILNVSGFHVLF-DCPLDLSA 37 (520)
Q Consensus 15 ~sc~ll~~~~~~iLl-DcG~~~~~ 37 (520)
++|++|.+++.+.|+ +||-+...
T Consensus 12 ~p~l~l~~d~~rYlFGn~gEGtQR 35 (63)
T PF13691_consen 12 GPSLLLFFDSRRYLFGNCGEGTQR 35 (63)
T ss_pred CCEEEEEeCCceEEeccCCcHHHH
Confidence 399999999999999 99988653
No 53
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=92.97 E-value=0.34 Score=47.09 Aligned_cols=112 Identities=17% Similarity=0.245 Sum_probs=72.4
Q ss_pred CcccEEEecCC--CCCCchhhhhcccC--CceeEEEeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhh
Q 009999 93 SFIDVVLISSP--MGMLGLPFLTRMEG--FSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELEL 168 (520)
Q Consensus 93 ~~id~IlISH~--DH~g~LP~L~~~~~--~~~~Iy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 168 (520)
..|.--+|||+ ||+.||-.=....+ -+..||+..-|.+..+. .+ + +|..|+.+..
T Consensus 111 Q~I~~y~ITH~HLDHIsGlVinSp~~~~qkkkTI~gl~~tIDvL~k----hv---------F--------N~lvWP~lt~ 169 (356)
T COG5212 111 QSINSYFITHAHLDHISGLVINSPDDSKQKKKTIYGLADTIDVLRK----HV---------F--------NWLVWPNLTD 169 (356)
T ss_pred hhhhheEeccccccchhceeecCccccccCCceEEechhHHHHHHH----Hh---------h--------cccccCCccc
Confidence 35778899999 99999743332111 13469999999886543 11 1 4666765531
Q ss_pred chhhhhhhhccCCCCCCCCCCchHHHHHHHHhhceeeccCCeEEeC-CCEEEEEEecCCCC--c----cEEEEEEeC--C
Q 009999 169 LPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYN-GILIIKAFSSGLDI--G----ACNWIISGA--K 239 (520)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~i~~~~y~~~~~l~-~~~~i~~~~aGH~l--G----s~~~~I~~~--~ 239 (520)
.+.. . -+++.+++.+...+. -.+++.+++..|.. | |+++++..+ +
T Consensus 170 ------------~gs~--~------------~~~qvv~P~~~~slt~t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nkS~ 223 (356)
T COG5212 170 ------------SGSG--T------------YRMQVVRPAQSLSLTLTRLTGEPFPVSHGKKTGSPSYSSMLLFRSNKSN 223 (356)
T ss_pred ------------ccCc--e------------EEEEEeChhHeeeeeeeeecceeeeccCCcccCCcccceEEEEecCCCc
Confidence 1110 1 267777776655543 14788999999954 4 377888876 6
Q ss_pred eEEEEecCCCCCC
Q 009999 240 GNIAYISGSNFAS 252 (520)
Q Consensus 240 ~~i~Y~sgD~~~~ 252 (520)
+-++| -||..+.
T Consensus 224 ~~f~~-fGDvepD 235 (356)
T COG5212 224 EFFAY-FGDVEPD 235 (356)
T ss_pred ceEEE-ecCCCcc
Confidence 77888 8998764
No 54
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=89.56 E-value=0.25 Score=53.91 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.2
Q ss_pred cCCcccEEEecCC--CCCCchhhhhc
Q 009999 91 NVSFIDVVLISSP--MGMLGLPFLTR 114 (520)
Q Consensus 91 ~~~~id~IlISH~--DH~g~LP~L~~ 114 (520)
....||+||+||. |.++|+..|++
T Consensus 78 HldrVdaVLLthpg~dNLpginsllq 103 (934)
T KOG3592|consen 78 HLDRVDAVLLTHPGADNLPGINSLLQ 103 (934)
T ss_pred HHhhhhhhhhcccccCccccchHHHH
Confidence 4668999999999 99999988876
No 55
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=86.39 E-value=2 Score=45.83 Aligned_cols=101 Identities=14% Similarity=0.069 Sum_probs=62.2
Q ss_pred CeEEEcCCCCCCCCCCeEE-EEECCEEEEEeCCCCCccccccCCCCcccccccccCCccccccccccCCCCccccccccc
Q 009999 1 MKFTCLCQGGGFNFPPCHI-LNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEP 79 (520)
Q Consensus 1 mkl~~lGg~~~~~~~sc~l-l~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p 79 (520)
.||+++++| ++.|.|.+ +++.+.+ |||.|-....... ++ .....|
T Consensus 151 Ikf~p~~aG--hVlgacMf~veiagv~-lLyTGd~sreeDr--hl-----------------------------~aae~P 196 (668)
T KOG1137|consen 151 IKFWPYHAG--HVLGACMFMVEIAGVR-LLYTGDYSREEDR--HL-----------------------------IAAEMP 196 (668)
T ss_pred eEEEeeccc--hhhhheeeeeeeceEE-EEeccccchhhcc--cc-----------------------------cchhCC
Confidence 378999954 88888855 6887755 5678866432110 00 001111
Q ss_pred ccccccccccccCCcccEEEecCC--CCCCchhhhhcccCCc-----eeEEEeHHHHHHHHHHHHHH
Q 009999 80 WYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFS-----AKIYITEAAARIGQLMMEEL 139 (520)
Q Consensus 80 ~~~~~~~~~~~~~~~id~IlISH~--DH~g~LP~L~~~~~~~-----~~Iy~T~~T~~l~~~~l~d~ 139 (520)
-. ....+-...+-++.++|. +|.+.|+.+....--+ .|||+...+.+|...+.+.+
T Consensus 197 ~~----~~dvli~estygv~~h~~r~~re~rlt~vIh~~v~rGGR~L~PvFAlgrAqELllildeyw 259 (668)
T KOG1137|consen 197 PT----GPDVLITESTYGVQIHEPREEREGRLTWVIHSTVPRGGRVLIPVFALGRAQELLLILDEYW 259 (668)
T ss_pred CC----CccEEEEEeeeeEEecCchHHhhhhhhhhHHhhccCCCceEeeeeecchHHHHHHHHHHHh
Confidence 11 000111234567777777 9999999998744333 59999999999887765554
No 56
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=74.76 E-value=20 Score=34.81 Aligned_cols=55 Identities=11% Similarity=0.040 Sum_probs=34.2
Q ss_pred CEEEEEEecCCCCc----------cEEEEEEeCCeEEEEecCCCCCCCCCCccccccCCCCCEEEE
Q 009999 216 ILIIKAFSSGLDIG----------ACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILY 271 (520)
Q Consensus 216 ~~~i~~~~aGH~lG----------s~~~~I~~~~~~i~Y~sgD~~~~~~~~~~~~~~~~~~DvLI~ 271 (520)
-++|.+.||-|--+ -++|.+...+.+++| .||+++.......--+.....|+..+
T Consensus 197 ~~ti~~tPaqHw~~R~L~D~Nk~LW~sw~v~g~~nrfff-aGDTGyc~~~F~~IgerfGpfdLAai 261 (343)
T KOG3798|consen 197 TYTIWCLPAQHWGQRGLFDRNKRLWSSWAVIGENNRFFF-AGDTGYCDGEFKKIGERFGPFDLAAI 261 (343)
T ss_pred EEEEEEcchhhhcccccccCCcceeeeeEEecCCceEEe-cCCCCcccHHHHHHHHhcCCcceeec
Confidence 47888888888543 156777777777777 99999864221100122334677666
No 57
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.66 E-value=19 Score=35.75 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=26.1
Q ss_pred EEeCCCEEEEEEecCCCCccEEEEEEe--CCeEEEEecCCCCCC
Q 009999 211 ACYNGILIIKAFSSGLDIGACNWIISG--AKGNIAYISGSNFAS 252 (520)
Q Consensus 211 ~~l~~~~~i~~~~aGH~lGs~~~~I~~--~~~~i~Y~sgD~~~~ 252 (520)
.++.+++.|. -..||..-+....+.. ...+++| +||....
T Consensus 173 ~~l~~~~~V~-~TpGht~~~isvlv~n~~~~GTv~i-tGDLf~~ 214 (302)
T KOG4736|consen 173 LKLSPNVEVW-KTPGHTQHDISVLVHNVDLYGTVAI-TGDLFPR 214 (302)
T ss_pred cccCCceeEe-eCCCCCCcceEEEEEeecccceEEE-EeecccC
Confidence 4454334443 3578887777777753 4679999 9998543
No 58
>PRK09375 quinolinate synthetase; Provisional
Probab=39.85 E-value=51 Score=33.50 Aligned_cols=74 Identities=15% Similarity=0.120 Sum_probs=41.9
Q ss_pred chHHHHHHHHcCCCCCceeecC-Ccchhh--ccCCCceeeeEE--EEecccCCCCHHHHHHhhhhcCCCCceeEeeeccc
Q 009999 440 GPTIHLLRRWSGDHNSLLVLEN-EVDAEL--AVLPFKPISMKA--SESSTLTKDTATEVSSVSRGMEDSCQFFRCYFILS 514 (520)
Q Consensus 440 G~s~~~l~~~~~~~~n~iil~~-~~~~~~--~~~~~~~v~~~v--~~~~~s~Had~~~l~~~i~~~~p~~~~~~~~~~~~ 514 (520)
|+|.++-+.-...+...|+|.| ++-.++ ++.|.+.|-+.- ..+|+..-++..++.++-++. |. .+..+|.+|
T Consensus 54 GDSl~Ls~~A~~~~a~~IvfcGV~FMaEtAkIL~p~k~VllP~~~AgC~mAd~~~~~~i~~lk~~~-p~--a~vVaYvNs 130 (319)
T PRK09375 54 GDSLELARFAAETDADTIVFCGVHFMAETAKILSPEKTVLLPDLEAGCSLADMCPAEEFRAFKEAH-PD--ATVVTYVNT 130 (319)
T ss_pred ccHHHHHHHHHhCCCCEEEEecceehhhhHHhcCCCCeEECCCCCCCCcccccCCHHHHHHHHHHC-CC--CEEEEEeCC
Confidence 5555555554444445555554 222222 234444433221 246788888888888888776 55 456677776
Q ss_pred cc
Q 009999 515 LP 516 (520)
Q Consensus 515 ~~ 516 (520)
.|
T Consensus 131 sa 132 (319)
T PRK09375 131 SA 132 (319)
T ss_pred CH
Confidence 54
No 59
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=36.56 E-value=69 Score=29.48 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=31.3
Q ss_pred eccCCeEEeCCCEEEEEE-ecCCCCccEEEEEEeCCeEEEEecCCC
Q 009999 205 LRFGEEACYNGILIIKAF-SSGLDIGACNWIISGAKGNIAYISGSN 249 (520)
Q Consensus 205 ~~y~~~~~l~~~~~i~~~-~aGH~lGs~~~~I~~~~~~i~Y~sgD~ 249 (520)
++.|+.+++ |++.++.. .-||..|+..|.+.. .+.+| |||.
T Consensus 100 l~~Gd~i~~-G~~~le~ratPGHT~GC~TyV~~d--~~~aF-TGDa 141 (237)
T KOG0814|consen 100 LEDGDIIEI-GGLKLEVRATPGHTNGCVTYVEHD--LRMAF-TGDA 141 (237)
T ss_pred cCCCCEEEE-ccEEEEEecCCCCCCceEEEEecC--cceee-ecce
Confidence 456888888 47777764 469999999998763 45888 9986
No 60
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=33.38 E-value=2.4e+02 Score=32.32 Aligned_cols=73 Identities=15% Similarity=0.289 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHH---hcCCeEEEecCChHHHHHHHHHHHHHHHhCCC-----ceeEEEEcchHHHHHHHHHHhHHH
Q 009999 311 EMEKLAFICSCAIDSV---KAGGSVLIPINRVGVFLQLLEQIAIFMECSSL-----KIPIYIISSVAEELLAYTNTIPEW 382 (520)
Q Consensus 311 e~~~l~~l~~~I~~tl---~~gG~VLIP~~~~Gr~qEll~~L~~~~~~~~l-----~~pI~~~s~~a~~~~~~~~~~~e~ 382 (520)
+++-++.+++.+...+ ..||+++-...-+|+++-.+..|+.++++..- .-|+++. |. .=+..-++.+..|
T Consensus 243 Q~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~-P~-sLv~nWkkEF~KW 320 (776)
T KOG0390|consen 243 QREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVA-PS-SLVNNWKKEFGKW 320 (776)
T ss_pred HHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEc-cH-HHHHHHHHHHHHh
Confidence 3556677888888764 56999999999999999999999999999754 6687775 63 4566677889999
Q ss_pred HHH
Q 009999 383 LCK 385 (520)
Q Consensus 383 l~~ 385 (520)
+..
T Consensus 321 l~~ 323 (776)
T KOG0390|consen 321 LGN 323 (776)
T ss_pred ccc
Confidence 876
No 61
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=32.13 E-value=50 Score=36.68 Aligned_cols=40 Identities=3% Similarity=-0.125 Sum_probs=36.5
Q ss_pred CceeeeEEEEecccCCCCHHHHHHhhhhcCCCCceeEeeecc
Q 009999 472 FKPISMKASESSTLTKDTATEVSSVSRGMEDSCQFFRCYFIL 513 (520)
Q Consensus 472 ~~~v~~~v~~~~~s~Had~~~l~~~i~~~~p~~~~~~~~~~~ 513 (520)
...++|+|..+.+-+..|...+.++|.+++|+ .++|.|+.
T Consensus 532 ~i~vs~~v~~iDyeGisDgrSik~ii~ql~Pr--~lIlvh~s 571 (764)
T KOG1135|consen 532 GIEVSCRVEKIDYEGISDGRSIKKIIAQLSPR--KLILVHGS 571 (764)
T ss_pred ceEEEEEEEEeeeeccccchhHHHHHhccCcc--EEEEecCC
Confidence 34689999999999999999999999999999 78999974
No 62
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=28.03 E-value=60 Score=30.72 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHh
Q 009999 317 FICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMEC 355 (520)
Q Consensus 317 ~l~~~I~~tl~~gG~VLIP~~~~Gr~qEll~~L~~~~~~ 355 (520)
.+++.+.+.|+.||.+++-++..++.+|++..+...+.+
T Consensus 146 ~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~ 184 (209)
T PRK11188 146 LALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTK 184 (209)
T ss_pred HHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceE
Confidence 456778888999999999999999999999888655544
No 63
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=27.59 E-value=1.4e+02 Score=28.25 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHh
Q 009999 319 CSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMEC 355 (520)
Q Consensus 319 ~~~I~~tl~~gG~VLIP~~~~Gr~qEll~~L~~~~~~ 355 (520)
++...+.|..||+.++.+|-.+-..+++..+..+++.
T Consensus 142 ~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~ 178 (205)
T COG0293 142 LEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRK 178 (205)
T ss_pred HHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhce
Confidence 3455667899999999999999999999999877665
No 64
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=23.30 E-value=1.7e+02 Score=25.79 Aligned_cols=85 Identities=8% Similarity=-0.110 Sum_probs=46.0
Q ss_pred CCCEEEEecCCCCCcchHHHHHHHHcCCCCCceeecC-CcchhhccCCCceeeeEEEEecccCCCCH---HHHHHhhhhc
Q 009999 425 QEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLEN-EVDAELAVLPFKPISMKASESSTLTKDTA---TEVSSVSRGM 500 (520)
Q Consensus 425 ~~p~Vv~as~~~l~~G~s~~~l~~~~~~~~n~iil~~-~~~~~~~~~~~~~v~~~v~~~~~s~Had~---~~l~~~i~~~ 500 (520)
+.|+|++++.+.=.-.....++..+..+..=-++.-| ..+++++...-...++++.-++....... .++++.+++.
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~ 81 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEA 81 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhc
Confidence 4688888887755444455566666666554555444 45555544333334555555554434444 4455555555
Q ss_pred CCCCceeEe
Q 009999 501 EDSCQFFRC 509 (520)
Q Consensus 501 ~p~~~~~~~ 509 (520)
.++.+.|++
T Consensus 82 ~~~~~~i~v 90 (137)
T PRK02261 82 GLGDILLYV 90 (137)
T ss_pred CCCCCeEEE
Confidence 454454444
No 65
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=22.57 E-value=6.1e+02 Score=23.33 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcCCeEEEecC--ChHHHHHHHHHHHHHHHhCCCceeEEEEc
Q 009999 315 LAFICSCAIDSVKAGGSVLIPIN--RVGVFLQLLEQIAIFMECSSLKIPIYIIS 366 (520)
Q Consensus 315 l~~l~~~I~~tl~~gG~VLIP~~--~~Gr~qEll~~L~~~~~~~~l~~pI~~~s 366 (520)
+.+..+.|.+++++|++||+--. +..-+|-+...|-..++..+-..|-.-.+
T Consensus 27 I~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt 80 (176)
T COG0279 27 IERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALS 80 (176)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEee
Confidence 33445667888999999998652 22335665555544444433344444443
No 66
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=21.64 E-value=1.5e+02 Score=26.38 Aligned_cols=35 Identities=23% Similarity=0.169 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHH
Q 009999 317 FICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAI 351 (520)
Q Consensus 317 ~l~~~I~~tl~~gG~VLIP~~~~Gr~qEll~~L~~ 351 (520)
.+|..+.++..+|.+|+|=+-.-.+.++|=+.|++
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt 51 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWT 51 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhhc
Confidence 46889999999999999999999999998888854
No 67
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=20.95 E-value=1.9e+02 Score=25.82 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHH
Q 009999 316 AFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIA 350 (520)
Q Consensus 316 ~~l~~~I~~tl~~gG~VLIP~~~~Gr~qEll~~L~ 350 (520)
..+.+.|.+.+++|+.|+-=| |=.|-|-..|.
T Consensus 29 ~~~~~~I~~~~~~G~pi~aeC---GG~~~Lg~~i~ 60 (158)
T PF07685_consen 29 RGLKEAIREAAEAGGPIYAEC---GGYQYLGESII 60 (158)
T ss_pred hCHHHHHHHHHHcCCcEEEEc---hHHHHHHHHHh
Confidence 345678888899998776554 44555555553
No 68
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=20.94 E-value=2.3e+02 Score=24.64 Aligned_cols=54 Identities=19% Similarity=0.395 Sum_probs=37.1
Q ss_pred cCCeEEEecCChHHHHHHHHHHHHHHHhCCC--ceeEEEEcchHHHHHHHHHHhHHHHHHHHHh
Q 009999 328 AGGSVLIPINRVGVFLQLLEQIAIFMECSSL--KIPIYIISSVAEELLAYTNTIPEWLCKQRQE 389 (520)
Q Consensus 328 ~gG~VLIP~~~~Gr~qEll~~L~~~~~~~~l--~~pI~~~s~~a~~~~~~~~~~~e~l~~~~~~ 389 (520)
..+-|++| -..|.+.|+.+.+. |.+.+. ++||++...- .+++...+|+....+.
T Consensus 54 sda~I~lP-GG~GTl~El~~~~~--~~~l~~~~~~Piil~~~~-----g~w~~l~~~l~~~~~~ 109 (133)
T PF03641_consen 54 SDAFIALP-GGIGTLDELFEALT--LMQLGRHNKVPIILLNID-----GFWDPLLEFLDRMIEE 109 (133)
T ss_dssp ESEEEEES--SHHHHHHHHHHHH--HHHTTSSTS-EEEEEECG-----GCCHHHHHHHHHHHHT
T ss_pred CCEEEEEe-cCCchHHHHHHHHH--HHhhccccCCCEEEeCCc-----chHHHHHHHHHHHHHC
Confidence 56778888 78999999999884 344443 5699998643 2777778887654443
No 69
>PRK00685 metal-dependent hydrolase; Provisional
Probab=20.03 E-value=1.4e+02 Score=28.08 Aligned_cols=31 Identities=6% Similarity=-0.022 Sum_probs=25.1
Q ss_pred cCCCCHHHHHHhhhhcCCCCceeEeeecccccc
Q 009999 485 LTKDTATEVSSVSRGMEDSCQFFRCYFILSLPL 517 (520)
Q Consensus 485 s~Had~~~l~~~i~~~~p~~~~~~~~~~~~~~~ 517 (520)
..|.+..+..+++++++|+ .++.+|..+.+.
T Consensus 168 ~~h~~~~ea~~~~~~~~~k--~~v~~H~~~~~~ 198 (228)
T PRK00685 168 NFTMGPEDAALAVELIKPK--IVIPMHYNTFPL 198 (228)
T ss_pred ccccCHHHHHHHHHhhCCC--EEEEeccCCCcC
Confidence 3589999999999999999 567777765444
Done!