BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010001
(520 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GU1|A Chain A, Crystal Structure Of Lsd2
pdb|4GU1|B Chain B, Crystal Structure Of Lsd2
Length = 784
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 127/457 (27%), Positives = 208/457 (45%), Gaps = 60/457 (13%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLY 105
LH+ KV +LE++DR+GGRV D SF G V GA ++G C NP+A + +LG+ ++
Sbjct: 363 LHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNG-CINNPVALMCEQLGISMH 421
Query: 106 RTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDE--DMS 163
+ E L G + ++ F ++L + R++ + D+
Sbjct: 422 KFG-----------ERCDLIQEGGRITDPTIDKRMDFHFNALLDVVSEWRKDKTQLQDVP 470
Query: 164 IQRAISIV---FDRRPELRFFEHVSSSLPGISXXXXXXXXXXXXXXXXXEGLAHKVLQWY 220
+ I + F + ++F E L +VLQ++
Sbjct: 471 LGEKIEEIYKAFIKESGIQFSE-----------------------------LEGQVLQFH 501
Query: 221 LCRMEGWFAADAETISLKSWDKEELLP---GGHGLMVRGYLPVINTLAKGLDIRLGHRVT 277
L +E ++ +S +SWD E G H L+ GY +I LA+GLDI+L V
Sbjct: 502 LSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKLAEGLDIQLKSPVQ 561
Query: 278 KITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIE 337
I V+VT G + A V+V VPL +L+ I+F P L + K AI+ LG GI
Sbjct: 562 CIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGII 621
Query: 338 NKIIMHFDKVFWPN----VEFLGVV--SDTSYGC-SYFLNLHKATGHCVLVYMPAGQLAR 390
KI + F FW + +F G V S + G + F ++ H VL+ + AG+
Sbjct: 622 EKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVA 681
Query: 391 DIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLY 448
+ + D+ L+++ + P +Y V+ W TD +YS+ G S + Y
Sbjct: 682 SVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAY 741
Query: 449 ERLRIPVD-NLFFAGEATSMSYPGSVHGAFSTGLMAA 484
+ + + +FFAGEAT+ +P +V GA+ +G+ A
Sbjct: 742 DIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVREA 778
>pdb|4GUR|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P21
pdb|4GUS|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group
P3221
pdb|4GUT|A Chain A, Crystal Structure Of Lsd2-npac
pdb|4GUU|A Chain A, Crystal Structure Of Lsd2-npac With Tranylcypromine
pdb|4GU0|A Chain A, Crystal Structure Of Lsd2 With H3
pdb|4GU0|B Chain B, Crystal Structure Of Lsd2 With H3
pdb|4GU0|C Chain C, Crystal Structure Of Lsd2 With H3
pdb|4GU0|D Chain D, Crystal Structure Of Lsd2 With H3
pdb|4HSU|A Chain A, Crystal Structure Of Lsd2-npac With H3(1-26)in Space Group
P21
Length = 776
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 127/457 (27%), Positives = 208/457 (45%), Gaps = 60/457 (13%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLY 105
LH+ KV +LE++DR+GGRV D SF G V GA ++G C NP+A + +LG+ ++
Sbjct: 355 LHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNG-CINNPVALMCEQLGISMH 413
Query: 106 RTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDE--DMS 163
+ E L G + ++ F ++L + R++ + D+
Sbjct: 414 KFG-----------ERCDLIQEGGRITDPTIDKRMDFHFNALLDVVSEWRKDKTQLQDVP 462
Query: 164 IQRAISIV---FDRRPELRFFEHVSSSLPGISXXXXXXXXXXXXXXXXXEGLAHKVLQWY 220
+ I + F + ++F E L +VLQ++
Sbjct: 463 LGEKIEEIYKAFIKESGIQFSE-----------------------------LEGQVLQFH 493
Query: 221 LCRMEGWFAADAETISLKSWDKEELLP---GGHGLMVRGYLPVINTLAKGLDIRLGHRVT 277
L +E ++ +S +SWD E G H L+ GY +I LA+GLDI+L V
Sbjct: 494 LSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKLAEGLDIQLKSPVQ 553
Query: 278 KITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIE 337
I V+VT G + A V+V VPL +L+ I+F P L + K AI+ LG GI
Sbjct: 554 CIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGII 613
Query: 338 NKIIMHFDKVFWPN----VEFLGVV--SDTSYGC-SYFLNLHKATGHCVLVYMPAGQLAR 390
KI + F FW + +F G V S + G + F ++ H VL+ + AG+
Sbjct: 614 EKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVA 673
Query: 391 DIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLY 448
+ + D+ L+++ + P +Y V+ W TD +YS+ G S + Y
Sbjct: 674 SVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAY 733
Query: 449 ERLRIPVD-NLFFAGEATSMSYPGSVHGAFSTGLMAA 484
+ + + +FFAGEAT+ +P +V GA+ +G+ A
Sbjct: 734 DIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVREA 770
>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of
C2221 At 2.13a
pdb|4FWF|A Chain A, Complex Structure Of Lsd2/aof1/kdm1b With H3k4 Mimic
pdb|4FWJ|A Chain A, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
pdb|4FWJ|B Chain B, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
Length = 796
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 127/457 (27%), Positives = 208/457 (45%), Gaps = 60/457 (13%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLY 105
LH+ KV +LE++DR+GGRV D SF G V GA ++G C NP+A + +LG+ ++
Sbjct: 375 LHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNG-CINNPVALMCEQLGISMH 433
Query: 106 RTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDE--DMS 163
+ E L G + ++ F ++L + R++ + D+
Sbjct: 434 KFG-----------ERCDLIQEGGRITDPTIDKRMDFHFNALLDVVSEWRKDKTQLQDVP 482
Query: 164 IQRAISIV---FDRRPELRFFEHVSSSLPGISXXXXXXXXXXXXXXXXXEGLAHKVLQWY 220
+ I + F + ++F E L +VLQ++
Sbjct: 483 LGEKIEEIYKAFIKESGIQFSE-----------------------------LEGQVLQFH 513
Query: 221 LCRMEGWFAADAETISLKSWDKEELLP---GGHGLMVRGYLPVINTLAKGLDIRLGHRVT 277
L +E ++ +S +SWD E G H L+ GY +I LA+GLDI+L V
Sbjct: 514 LSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKLAEGLDIQLKSPVQ 573
Query: 278 KITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIE 337
I V+VT G + A V+V VPL +L+ I+F P L + K AI+ LG GI
Sbjct: 574 CIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGII 633
Query: 338 NKIIMHFDKVFWPN----VEFLGVV--SDTSYGC-SYFLNLHKATGHCVLVYMPAGQLAR 390
KI + F FW + +F G V S + G + F ++ H VL+ + AG+
Sbjct: 634 EKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVA 693
Query: 391 DIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLY 448
+ + D+ L+++ + P +Y V+ W TD +YS+ G S + Y
Sbjct: 694 SVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAY 753
Query: 449 ERLRIPVD-NLFFAGEATSMSYPGSVHGAFSTGLMAA 484
+ + + +FFAGEAT+ +P +V GA+ +G+ A
Sbjct: 754 DIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVREA 790
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 154/299 (51%), Gaps = 32/299 (10%)
Query: 215 KVLQWYLCRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRL 272
++L W+ +E A T+SLK WD+++ G H + GY V LA+GLDI+L
Sbjct: 356 QILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 415
Query: 273 GHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDW 324
V ++ G +V T +TF+ DAV+ +PLGVLK + ++F P LP+W
Sbjct: 416 NTAVRQVQYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEW 475
Query: 325 KEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVL 380
K +A+ +G G NK+++ FD+VFW P+V G V T+ F NL+KA +L
Sbjct: 476 KTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---IL 532
Query: 381 VYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSY 438
+ + AG+ A +E +SD+ LK I ++ P + +VS W D + GSYSY
Sbjct: 533 LALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSY 592
Query: 439 DTVGKSHDLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 484
G S + Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 593 VAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 651
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106
L V LLE+RDRVGGRV T + DLGA + G+ NP+A V ++ + L +
Sbjct: 126 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 184
Query: 107 TSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQR 166
+ L++ +G VP+E V + F +L+ T + + D ++ +
Sbjct: 185 IK-----------QKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNK 233
Query: 167 AISI 170
+S+
Sbjct: 234 PVSL 237
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 154/299 (51%), Gaps = 32/299 (10%)
Query: 215 KVLQWYLCRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRL 272
++L W+ +E A T+SLK WD+++ G H + GY V LA+GLDI+L
Sbjct: 405 QILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 464
Query: 273 GHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDW 324
V ++ G +V T +TF+ DAV+ +PLGVLK + ++F P LP+W
Sbjct: 465 NTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEW 524
Query: 325 KEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVL 380
K +A+ +G G NK+++ FD+VFW P+V G V T+ F NL+KA +L
Sbjct: 525 KTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---IL 581
Query: 381 VYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSY 438
+ + AG+ A +E +SD+ LK I ++ P + +VS W D + GSYSY
Sbjct: 582 LALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSY 641
Query: 439 DTVGKSHDLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 484
G S + Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 642 VAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 700
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106
L V LLE+RDRVGGRV T + DLGA + G+ NP+A V ++ + L +
Sbjct: 175 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 233
Query: 107 TSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQR 166
+ L++ +G VP+E V + F +L+ T + + D ++ +
Sbjct: 234 IK-----------QKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNK 282
Query: 167 AISI 170
+S+
Sbjct: 283 PVSL 286
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 154/299 (51%), Gaps = 32/299 (10%)
Query: 215 KVLQWYLCRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRL 272
++L W+ +E A T+SLK WD+++ G H + GY V LA+GLDI+L
Sbjct: 357 QILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 416
Query: 273 GHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDW 324
V ++ G +V T +TF+ DAV+ +PLGVLK + ++F P LP+W
Sbjct: 417 NTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEW 476
Query: 325 KEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVL 380
K +A+ +G G NK+++ FD+VFW P+V G V T+ F NL+KA +L
Sbjct: 477 KTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---IL 533
Query: 381 VYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSY 438
+ + AG+ A +E +SD+ LK I ++ P + +VS W D + GSYSY
Sbjct: 534 LALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSY 593
Query: 439 DTVGKSHDLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 484
G S + Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 594 VAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 652
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106
L V LLE+RDRVGGRV T + DLGA + G+ NP+A V ++ + L +
Sbjct: 127 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 185
Query: 107 TSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQR 166
+ L++ +G VP+E V + F +L+ T + + D ++ +
Sbjct: 186 IK-----------QKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNK 234
Query: 167 AISI 170
+S+
Sbjct: 235 PVSL 238
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 154/299 (51%), Gaps = 32/299 (10%)
Query: 215 KVLQWYLCRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRL 272
++L W+ +E A T+SLK WD+++ G H + GY V LA+GLDI+L
Sbjct: 356 QILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 415
Query: 273 GHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDW 324
V ++ G +V T +TF+ DAV+ +PLGVLK + ++F P LP+W
Sbjct: 416 NTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEW 475
Query: 325 KEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVL 380
K +A+ +G G NK+++ FD+VFW P+V G V T+ F NL+KA +L
Sbjct: 476 KTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---IL 532
Query: 381 VYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSY 438
+ + AG+ A +E +SD+ LK I ++ P + +VS W D + GSYSY
Sbjct: 533 LALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSY 592
Query: 439 DTVGKSHDLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 484
G S + Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 593 VAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 651
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106
L V LLE+RDRVGGRV T + DLGA + G+ NP+A V ++ + L +
Sbjct: 126 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 184
Query: 107 TSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQR 166
+ L++ +G VP+E V + F +L+ T + + D ++ +
Sbjct: 185 IK-----------QKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNK 233
Query: 167 AISI 170
+S+
Sbjct: 234 PVSL 237
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 154/299 (51%), Gaps = 32/299 (10%)
Query: 215 KVLQWYLCRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRL 272
++L W+ +E A T+SLK WD+++ G H + GY V LA+GLDI+L
Sbjct: 409 QILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 468
Query: 273 GHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDW 324
V ++ G +V T +TF+ DAV+ +PLGVLK + ++F P LP+W
Sbjct: 469 NTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEW 528
Query: 325 KEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVL 380
K +A+ +G G NK+++ FD+VFW P+V G V T+ F NL+KA +L
Sbjct: 529 KTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---IL 585
Query: 381 VYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSY 438
+ + AG+ A +E +SD+ LK I ++ P + +VS W D + GSYSY
Sbjct: 586 LALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSY 645
Query: 439 DTVGKSHDLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 484
G S + Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 646 VAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 704
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 8/124 (6%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106
L V LLE+RDRVGGRV T + DLGA + G+ NP+A V ++ + L +
Sbjct: 175 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 233
Query: 107 TSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQR 166
LY+ + ++ D +VP+E V + F +L+ T + + D ++ +
Sbjct: 234 IK-QKCPLYEANGQA------DTVKVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNK 286
Query: 167 AISI 170
+S+
Sbjct: 287 PVSL 290
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 154/299 (51%), Gaps = 32/299 (10%)
Query: 215 KVLQWYLCRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRL 272
++L W+ +E A T+SLK WD+++ G H + GY V LA+GLDI+L
Sbjct: 356 QILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 415
Query: 273 GHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDW 324
V ++ G +V T +TF+ DAV+ +PLGVLK + ++F P LP+W
Sbjct: 416 NTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEW 475
Query: 325 KEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVL 380
K +A+ +G G NK+++ FD+VFW P+V G V T+ F NL+KA +L
Sbjct: 476 KTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---IL 532
Query: 381 VYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSY 438
+ + AG+ A +E +SD+ LK I ++ P + +VS W D + GSYSY
Sbjct: 533 LALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSY 592
Query: 439 DTVGKSHDLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 484
G S + Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 593 VAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 651
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106
L V LLE+RDRVGGRV T + DLGA + G+ NP+A V ++ + L +
Sbjct: 126 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 184
Query: 107 TSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQR 166
+ L++ +G VP+E V + F +L+ T + + D ++ +
Sbjct: 185 IK-----------QKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNK 233
Query: 167 AISI 170
+S+
Sbjct: 234 PVSL 237
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 154/299 (51%), Gaps = 32/299 (10%)
Query: 215 KVLQWYLCRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRL 272
++L W+ +E A T+SLK WD+++ G H + GY V LA+GLDI+L
Sbjct: 356 QILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 415
Query: 273 GHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDW 324
V ++ G +V T +TF+ DAV+ +PLGVLK + ++F P LP+W
Sbjct: 416 NTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEW 475
Query: 325 KEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVL 380
K +A+ +G G NK+++ FD+VFW P+V G V T+ F NL+KA +L
Sbjct: 476 KTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---IL 532
Query: 381 VYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSY 438
+ + AG+ A +E +SD+ LK I ++ P + +VS W D + GSYSY
Sbjct: 533 LALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSY 592
Query: 439 DTVGKSHDLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 484
G S + Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 593 VAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 651
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106
L V LLE+RDRVGGRV T + DLGA + G+ NP+A V ++ + L +
Sbjct: 126 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 184
Query: 107 TSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQR 166
+ L++ +G VP+E V + F +L+ T + + D ++ +
Sbjct: 185 IK-----------QKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNK 233
Query: 167 AISI 170
+S+
Sbjct: 234 PVSL 237
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 154/300 (51%), Gaps = 32/300 (10%)
Query: 214 HKVLQWYLCRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIR 271
++L W+ +E A T+SLK WD+++ G H + GY V LA+GLDI+
Sbjct: 526 RQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIK 585
Query: 272 LGHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPD 323
L V ++ G +V T +TF+ DAV+ +PLGVLK + ++F P LP+
Sbjct: 586 LNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPE 645
Query: 324 WKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYGCS---YFLNLHKATGHCV 379
WK +A+ +G G NK+++ FD+VFW P+V G V T+ F NL+KA +
Sbjct: 646 WKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---I 702
Query: 380 LVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYS 437
L+ + AG+ A +E +SD+ LK I ++ P + +VS W D + GSYS
Sbjct: 703 LLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYS 762
Query: 438 YDTVGKSHDLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 484
Y G S + Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 763 YVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 822
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106
L V LLE+RDRVGGRV T + DLGA + G+ NP+A V ++ + L +
Sbjct: 297 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 355
Query: 107 TSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQR 166
+ L++ +G VP+E V + F +L+ T + + D ++ +
Sbjct: 356 IK-----------QKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNK 404
Query: 167 AISI 170
+S+
Sbjct: 405 PVSL 408
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 122/252 (48%), Gaps = 15/252 (5%)
Query: 257 YLPVINTLAKGLDIRLGHRVTKITRHYI----GVKVTVEGGKTFVADAVVVAVPLGVLKA 312
YL + K +D RL ++ K+ R GV V E + AD V+V+ LGVL++
Sbjct: 216 YLKTDDKSGKIVDPRL--QLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQS 273
Query: 313 RTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVE----FLGVVSDTSYGCSYF 368
I+F+P+LP WK AI + + KI + F + FWP + FL S Y +
Sbjct: 274 DLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQ 333
Query: 369 LNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHW 426
+ VL+ + +R IE+ SDE L+K+ P D LV W
Sbjct: 334 EFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRW 393
Query: 427 GTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAE- 485
+D G++S VG + Y++LR PV ++F GE TS Y G VHGA+ +G+ +AE
Sbjct: 394 WSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEI 453
Query: 486 --DCRMRVLERY 495
+C + + +Y
Sbjct: 454 LINCAQKKMCKY 465
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 15/118 (12%)
Query: 54 VVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVC--QENPLAPVI-SRLGLPLYRTSGD 110
+++LE+ D +GGR+H G V+LGA+W+ GV + NP+ P++ S L L +R+
Sbjct: 31 LLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRNFRS--- 87
Query: 111 NSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDK----VREEHDEDMSI 164
D D + ++ DG ++ V K E +S+ + +K + +DMSI
Sbjct: 88 -----DFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKLSATLHASGRDDMSI 140
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 121/252 (48%), Gaps = 15/252 (5%)
Query: 257 YLPVINTLAKGLDIRLGHRVTKITRHYI----GVKVTVEGGKTFVADAVVVAVPLGVLKA 312
YL + K +D RL ++ K+ R GV V E + AD V+V+ LGVL++
Sbjct: 216 YLKTDDKSGKIVDPRL--QLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQS 273
Query: 313 RTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVE----FLGVVSDTSYGCSYF 368
I+F+P+LP WK AI + + I + F + FWP + FL S Y +
Sbjct: 274 DLIQFKPKLPTWKVRAIYQFDMAVYTMIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQ 333
Query: 369 LNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHW 426
+ VL+ + +R IE+ SDE L+K+ P D LV W
Sbjct: 334 EFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRW 393
Query: 427 GTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAE- 485
+D G++S VG + Y++LR PV ++F GE TS Y G VHGA+ +G+ +AE
Sbjct: 394 WSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEI 453
Query: 486 --DCRMRVLERY 495
+C + + +Y
Sbjct: 454 LINCAQKKMCKY 465
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 15/118 (12%)
Query: 54 VVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVC--QENPLAPVI-SRLGLPLYRTSGD 110
+++LE+ D +GGR+H G V+LGA+W+ GV + NP+ P++ S L L +R+
Sbjct: 31 LLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRNFRS--- 87
Query: 111 NSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDK----VREEHDEDMSI 164
D D + ++ DG ++ V K E +S+ + +K + +DMSI
Sbjct: 88 -----DFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKLSATLHASGRDDMSI 140
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 122/510 (23%), Positives = 191/510 (37%), Gaps = 131/510 (25%)
Query: 54 VVLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNS 112
++LE+RDRVGGR+ T + G D+GASW H NPL ++L L G
Sbjct: 35 CLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLT-NPLFLEEAQLSL----NDGRTR 89
Query: 113 VLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVF 172
++D D I + ++ R +HD+++ ++ +
Sbjct: 90 FVFDDD--------------------------NFIYIDEERGRVDHDKELLLE-IVDNEM 122
Query: 173 DRRPELRFFEHVSSSLPGISXXXXXXXXXXXXXXXXXEGLAHKVLQWY--LCR-MEGWFA 229
+ EL F +H+ G+S + L + +++ LCR +E W
Sbjct: 123 SKFAELEFHQHL-----GVSDCSFFQLVMKYLLQRR-QFLTNDQIRYLPQLCRYLELWHG 176
Query: 230 ADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLD---IRLGHRVTKITRH-YIG 285
D + +S K G Y V+ +A+ ++L V ITR
Sbjct: 177 LDWKLLSAKD---TYFGHQGRAAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKN 233
Query: 286 VKVTVEGGKTFVADAVVVAVPLGVLKART---------IKFEPRLPDWKEAAIDDLGVGI 336
V V E G + AD V++ VP VL I+F+P L + A D + G
Sbjct: 234 VTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGA 293
Query: 337 ENKIIMHFDKVFWPNV------------EFLGVVSD-------------------TSYGC 365
K+I F++ W N EF+ +V + TS C
Sbjct: 294 LGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSVTC 353
Query: 366 ----SYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ--LKKILP------ 413
+F+NL K+TG + + L IE + ++ F+F Q L KI+
Sbjct: 354 WSQPLFFVNLSKSTGVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLNKIMKCLDSED 413
Query: 414 --DASSPIQ------------YLVSHWGTDANSLGSYSYD---------TVGKSHDLYER 450
D PI+ +VS+W D S G+YS V S+ R
Sbjct: 414 VIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSR 473
Query: 451 LRIPVDNLFFAGEATSMSYPGSVHGAFSTG 480
+R FAGE T M G +GA+ +G
Sbjct: 474 IR-------FAGEHTIMDGAGCAYGAWESG 496
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 123/514 (23%), Positives = 192/514 (37%), Gaps = 131/514 (25%)
Query: 54 VVLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNS 112
++LE+RDRVGGR+ T + G D+GASW H NPL ++L L G
Sbjct: 35 CLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLT-NPLFLEEAQLSL----NDGRTR 89
Query: 113 VLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVF 172
++D D I + ++ R +HD+++ ++ +
Sbjct: 90 FVFDDD--------------------------NFIYIDEERGRVDHDKELLLE-IVDNEM 122
Query: 173 DRRPELRFFEHVSSSLPGISXXXXXXXXXXXXXXXXXEGLAHKVLQWY--LCR-MEGWFA 229
+ EL F +H+ G+S + L + +++ LCR +E W
Sbjct: 123 SKFAELEFHQHL-----GVSDCSFFQLVMKYLLQRR-QFLTNDQIRYLPQLCRYLELWHG 176
Query: 230 ADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLD---IRLGHRVTKITRH-YIG 285
D + +S K G Y V+ +A+ ++L V ITR
Sbjct: 177 LDWKLLSAKD---TYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKN 233
Query: 286 VKVTVEGGKTFVADAVVVAVPLGVLKART---------IKFEPRLPDWKEAAIDDLGVGI 336
V V E G + AD V++ VP VL I+F+P L + A D + G
Sbjct: 234 VTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGA 293
Query: 337 ENKIIMHFDKVFWPNV------------EFLGVVSD-------------------TSYGC 365
K+I F++ W N EF+ +V + TS C
Sbjct: 294 LGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSVTC 353
Query: 366 ----SYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ--LKKILP------ 413
+F+NL K+TG + + L IE + ++ F+F Q L KI+
Sbjct: 354 WSQPLFFVNLSKSTGVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLNKIMKCLDSED 413
Query: 414 --DASSPIQ------------YLVSHWGTDANSLGSYSYD---------TVGKSHDLYER 450
D PI+ +VS+W D S G+YS V S+ R
Sbjct: 414 VIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSR 473
Query: 451 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 484
+R FAGE T M G +GA+ +G A
Sbjct: 474 IR-------FAGEHTIMDGAGCAYGAWESGRREA 500
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
Length = 513
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 123/514 (23%), Positives = 192/514 (37%), Gaps = 131/514 (25%)
Query: 54 VVLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNS 112
++LE+RDRVGGR+ T + G D+GASW H NPL ++L L G
Sbjct: 35 CLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLT-NPLFLEEAQLSL----NDGRTR 89
Query: 113 VLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVF 172
++D D I + ++ R +HD+++ ++ +
Sbjct: 90 FVFDDD--------------------------NFIYIDEERGRVDHDKELLLE-IVDNEM 122
Query: 173 DRRPELRFFEHVSSSLPGISXXXXXXXXXXXXXXXXXEGLAHKVLQWY--LCR-MEGWFA 229
+ EL F +H+ G+S + L + +++ LCR +E W
Sbjct: 123 SKFAELEFHQHL-----GVSDCSFFQLVMKYLLQRR-QFLTNDQIRYLPQLCRYLELWHG 176
Query: 230 ADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLD---IRLGHRVTKITRH-YIG 285
D + +S K G Y V+ +A+ ++L V ITR
Sbjct: 177 LDWKLLSAKD---TYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKN 233
Query: 286 VKVTVEGGKTFVADAVVVAVPLGVLKART---------IKFEPRLPDWKEAAIDDLGVGI 336
V V E G + AD V++ VP VL I+F+P L + A D + G
Sbjct: 234 VTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGA 293
Query: 337 ENKIIMHFDKVFWPNV------------EFLGVVSD-------------------TSYGC 365
K+I F++ W N EF+ +V + TS C
Sbjct: 294 LGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSVTC 353
Query: 366 ----SYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ--LKKILP------ 413
+F+NL K+TG + + L IE + ++ F+F Q L KI+
Sbjct: 354 WSQPLFFVNLSKSTGVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLNKIMKCLDSED 413
Query: 414 --DASSPIQ------------YLVSHWGTDANSLGSYSYD---------TVGKSHDLYER 450
D PI+ +VS+W D S G+YS V S+ R
Sbjct: 414 VIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSR 473
Query: 451 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 484
+R FAGE T M G +GA+ +G A
Sbjct: 474 IR-------FAGEHTIMDGAGCAYGAWESGRREA 500
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 122/510 (23%), Positives = 191/510 (37%), Gaps = 131/510 (25%)
Query: 54 VVLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNS 112
++LE+RDRVGGR+ T + G D+GASW H NPL ++L L G
Sbjct: 35 CLVLEARDRVGGRLQTVTGYQGRKYDIGASW-HQDTLTNPLFLEEAQLSL----NDGRTR 89
Query: 113 VLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVF 172
++D D I + ++ R +HD+++ ++ +
Sbjct: 90 FVFDDD--------------------------NFIYIDEERGRVDHDKELLLE-IVDNEM 122
Query: 173 DRRPELRFFEHVSSSLPGISXXXXXXXXXXXXXXXXXEGLAHKVLQWY--LCR-MEGWFA 229
+ EL F +H+ G+S + L + +++ LCR +E W
Sbjct: 123 SKFAELEFHQHL-----GVSDCSFFQLVMKYLLQRR-QFLTNDQIRYLPQLCRYLELWHG 176
Query: 230 ADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLD---IRLGHRVTKITRH-YIG 285
D + +S K G Y V+ +A+ ++L V ITR
Sbjct: 177 LDWKLLSAKD---TYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKN 233
Query: 286 VKVTVEGGKTFVADAVVVAVPLGVLKART---------IKFEPRLPDWKEAAIDDLGVGI 336
V V E G + AD V++ VP VL I+F+P L + A D + G
Sbjct: 234 VTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGA 293
Query: 337 ENKIIMHFDKVFWPNV------------EFLGVVSD-------------------TSYGC 365
K+I F++ W N EF+ +V + TS C
Sbjct: 294 LGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSVTC 353
Query: 366 ----SYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ--LKKILP------ 413
+F+NL K+TG + + L IE + ++ F+F Q L KI+
Sbjct: 354 WSQPLFFVNLSKSTGVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLNKIMKCLDSED 413
Query: 414 --DASSPIQ------------YLVSHWGTDANSLGSYSYD---------TVGKSHDLYER 450
D PI+ +VS+W D S G+YS V S+ R
Sbjct: 414 VIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSR 473
Query: 451 LRIPVDNLFFAGEATSMSYPGSVHGAFSTG 480
+R FAGE T M G +GA+ +G
Sbjct: 474 IR-------FAGEHTIMDGAGCAYGAWESG 496
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
Length = 516
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 123/514 (23%), Positives = 194/514 (37%), Gaps = 131/514 (25%)
Query: 54 VVLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNS 112
++LE+RDRVGGR+ T + G D+GASW H NPL ++L L
Sbjct: 35 CLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLT-NPLFLEEAQLSL---------- 83
Query: 113 VLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVF 172
+D + +FD D I + ++ R +HD+++ ++ +
Sbjct: 84 ----NDGRTRFVFDDDN----------------FIYIDEERGRVDHDKELLLE-IVDNEX 122
Query: 173 DRRPELRFFEHVSSSLPGISXXXXXXXXXXXXXXXXXEGLAHKVLQWY--LCR-MEGWFA 229
+ EL F +H+ G+S + L + +++ LCR +E W
Sbjct: 123 SKFAELEFHQHL-----GVSDCSFFQLVXKYLLQRR-QFLTNDQIRYLPQLCRYLELWHG 176
Query: 230 ADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLD---IRLGHRVTKITRH-YIG 285
D + +S K G Y V+ +A+ ++L V ITR
Sbjct: 177 LDWKLLSAKD---TYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKN 233
Query: 286 VKVTVEGGKTFVADAVVVAVPLGVLKART---------IKFEPRLPDWKEAAIDDLGVGI 336
V V E G + AD V++ VP VL I+F+P L + A D + G
Sbjct: 234 VTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGA 293
Query: 337 ENKIIMHFDKVFWPNV------------EFLGVVSD-------------------TSYGC 365
K+I F++ W N EF+ +V + TS C
Sbjct: 294 LGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLDELDSXLEREDSQKHTSVTC 353
Query: 366 ----SYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ--LKKI-------- 411
+F+NL K+TG + L IE + ++ F+F Q L KI
Sbjct: 354 WSQPLFFVNLSKSTGVASFXXLXQAPLTNHIESIREDKERLFSFFQPVLNKIXKCLDSED 413
Query: 412 ----------LPDASSPI--QYLVSHWGTDANSLGSYSY---------DTVGKSHDLYER 450
+ +A+ P+ +VS+W D S G+YS V S+ R
Sbjct: 414 VIDGXRPIENIANANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDXVVAXSNGQDSR 473
Query: 451 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 484
+R FAGE T G +GA+ +G A
Sbjct: 474 IR-------FAGEHTIXDGAGCAYGAWESGRREA 500
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 105/470 (22%), Positives = 188/470 (40%), Gaps = 73/470 (15%)
Query: 47 LHDASFKVVLLESRDRVGGRV------HTDYSFGFPVDLGASWLHGVCQENPLAPVISRL 100
L + V++LE+RDRVGGR H DY VD+G +++ +N + + L
Sbjct: 21 LTEYGVSVLVLEARDRVGGRTYTIRNEHVDY-----VDVGGAYVGPT--QNRILRLSKEL 73
Query: 101 GLPLYRTSGDNSVLYDHDLESY---ALFDMDGNQVPQELVTKVGEAFESILKE--TDKVR 155
G+ Y+ + ++ ++Y A F N + + +++ KE TD
Sbjct: 74 GIETYKVNVSERLVQYVKGKTYPFRAAFPPVWNPIAYLDYNNLWRTIDNMGKEIPTDAPW 133
Query: 156 EEHDED----MSIQRAISIVFDRRPELRF---FEHVS-SSLPGISXXXXXXXXXXXXXXX 207
E D M+++ I + + RF F +++ +S P
Sbjct: 134 EAQHADKWDKMTMKELIDKICWTKTARRFAYLFVNINVTSEP------------------ 175
Query: 208 XXEGLAHKV----LQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINT 263
H+V WY+ + G S+ + +E GG G + + ++
Sbjct: 176 ------HEVSALWFLWYVKQCGG----TTRIFSVTNGGQERKFVGGSGQVSERIMDLL-- 223
Query: 264 LAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPD 323
G ++L H VT + + + + + + V+ A+P L A+ I F P LP
Sbjct: 224 ---GDQVKLNHPVTHVDQSSDNIIIETLNHEHYECKYVINAIP-PTLTAK-IHFRPELPA 278
Query: 324 WKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATGH--CV 379
+ I L +G K +M++ + FW ++ G ++ D S L+ K G +
Sbjct: 279 ERNQLIQRLPMGAVIKCMMYYKEAFWKKKDYCGCMIIEDEDAPISITLDDTKPDGSLPAI 338
Query: 380 LVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYS 437
+ ++ A + R + K+ E K+L +A P+ Y +W + S G Y+
Sbjct: 339 MGFILARKADR-LAKLHKEIRKKKICELYAKVLGSQEALHPVHYEEKNWCEEQYSGGCYT 397
Query: 438 -YDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 486
Y G +R PV +FFAG T+ + G + GA G AA +
Sbjct: 398 AYFPPGIMTQYGRVIRQPVGRIFFAGTETATKWSGYMEGAVEAGERAARE 447
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 104/470 (22%), Positives = 187/470 (39%), Gaps = 73/470 (15%)
Query: 47 LHDASFKVVLLESRDRVGGRV------HTDYSFGFPVDLGASWLHGVCQENPLAPVISRL 100
L + V++LE+RDRVGGR H DY VD+G +++ +N + + L
Sbjct: 32 LTEYGVSVLVLEARDRVGGRTYTIRNEHVDY-----VDVGGAYVGPT--QNRILRLSKEL 84
Query: 101 GLPLYRTSGDNSVLYDHDLESYAL---FDMDGNQVPQELVTKVGEAFESILKE--TDKVR 155
G+ Y+ + ++ ++Y F N + + +++ KE TD
Sbjct: 85 GIETYKVNVSERLVQYVKGKTYPFRGAFPPVWNPIAYLDYNNLWRTIDNMGKEIPTDAPW 144
Query: 156 EEHDED----MSIQRAISIVFDRRPELRF---FEHVS-SSLPGISXXXXXXXXXXXXXXX 207
E D M+++ I + + RF F +++ +S P
Sbjct: 145 EAQHADKWDKMTMKELIDKICWTKTARRFAYLFVNINVTSEP------------------ 186
Query: 208 XXEGLAHKV----LQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINT 263
H+V WY+ + G S+ + +E GG G + + ++
Sbjct: 187 ------HEVSALWFLWYVKQCGG----TTRIFSVTNGGQERKFVGGSGQVSERIMDLL-- 234
Query: 264 LAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPD 323
G ++L H VT + + + + + + V+ A+P L A+ I F P LP
Sbjct: 235 ---GDQVKLNHPVTHVDQSSDNIIIETLNHEHYECKYVINAIP-PTLTAK-IHFRPELPA 289
Query: 324 WKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATGH--CV 379
+ I L +G K +M++ + FW ++ G ++ D S L+ K G +
Sbjct: 290 ERNQLIQRLPMGAVIKCMMYYKEAFWKKKDYCGCMIIEDEDAPISITLDDTKPDGSLPAI 349
Query: 380 LVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYS 437
+ ++ A + R + K+ E K+L +A P+ Y +W + S G Y+
Sbjct: 350 MGFILARKADR-LAKLHKEIRKKKICELYAKVLGSQEALHPVHYEEKNWCEEQYSGGCYT 408
Query: 438 -YDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 486
Y G +R PV +FFAG T+ + G + GA G AA +
Sbjct: 409 AYFPPGIMTQYGRVIRQPVGRIFFAGTETATKWSGYMEGAVEAGERAARE 458
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 104/470 (22%), Positives = 187/470 (39%), Gaps = 73/470 (15%)
Query: 47 LHDASFKVVLLESRDRVGGRV------HTDYSFGFPVDLGASWLHGVCQENPLAPVISRL 100
L + V++LE+RDRVGGR H DY VD+G +++ +N + + L
Sbjct: 21 LTEYGVSVLVLEARDRVGGRTYTIRNEHVDY-----VDVGGAYVGPT--QNRILRLSKEL 73
Query: 101 GLPLYRTSGDNSVLYDHDLESYAL---FDMDGNQVPQELVTKVGEAFESILKE--TDKVR 155
G+ Y+ + ++ ++Y F N + + +++ KE TD
Sbjct: 74 GIETYKVNVSERLVQYVKGKTYPFRGAFPPVWNPIAYLDYNNLWRTIDNMGKEIPTDAPW 133
Query: 156 EEHDED----MSIQRAISIVFDRRPELRF---FEHVS-SSLPGISXXXXXXXXXXXXXXX 207
E D M+++ I + + RF F +++ +S P
Sbjct: 134 EAQHADKWDKMTMKELIDKICWTKTARRFAYLFVNINVTSEP------------------ 175
Query: 208 XXEGLAHKV----LQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINT 263
H+V WY+ + G S+ + +E GG G + + ++
Sbjct: 176 ------HEVSALWFLWYVKQCGG----TTRIFSVTNGGQERKFVGGSGQVSERIMDLL-- 223
Query: 264 LAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPD 323
G ++L H VT + + + + + + V+ A+P L A+ I F P LP
Sbjct: 224 ---GDQVKLNHPVTHVDQSSDNIIIETLNHEHYECKYVINAIP-PTLTAK-IHFRPELPA 278
Query: 324 WKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATGH--CV 379
+ I L +G K +M++ + FW ++ G ++ D S L+ K G +
Sbjct: 279 ERNQLIQRLPMGAVIKCMMYYKEAFWKKKDYCGCMIIEDEDAPISITLDDTKPDGSLPAI 338
Query: 380 LVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYS 437
+ ++ A + R + K+ E K+L +A P+ Y +W + S G Y+
Sbjct: 339 MGFILARKADR-LAKLHKEIRKKKICELYAKVLGSQEALHPVHYEEKNWCEEQYSGGCYT 397
Query: 438 -YDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 486
Y G +R PV +FFAG T+ + G + GA G AA +
Sbjct: 398 AYFPPGIMTQYGRVIRQPVGRIFFAGTETATKWSGYMEGAVEAGERAARE 447
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
Length = 486
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 96/228 (42%), Gaps = 14/228 (6%)
Query: 270 IRLGHRVTKITRHYIGVKVTVEGGK----TFVADAVVVAVPLGVLKARTIKFEPRLPDWK 325
++ RV KI ++ V VT + + + AD V+V AR I+FEP LP K
Sbjct: 255 VKFNARVIKIQQNANQVTVTYQTPEKDTSSNTADYVIVCTT--SRAARRIQFEPPLPPKK 312
Query: 326 EAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCS--YFLNLHKATGHCVLVYM 383
+ A+ + KI + FW + G S T Y+ N + +TG V++
Sbjct: 313 QHALRSVHYRSGTKIFLTCSSKFWEDDGIHGGKSTTDLPSRFIYYPNHNFSTGVGVIIAY 372
Query: 384 PAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQY-----LVSHWGTDANSLGSYSY 438
G A + + + A+ F L I IQ ++ W D ++G+ +
Sbjct: 373 GIGDDANFFQALKFKDCADIVFNDLSLIHQLPKEEIQSFCYPSMIQKWSLDKYAMGAITT 432
Query: 439 DTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 486
T + E L P +FFAGE T+ ++ G + +GL AA D
Sbjct: 433 FTPYQFQRFSEALTAPQGRIFFAGEYTAEAH-GWIDSTIKSGLTAARD 479
>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C72|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 114/276 (41%), Gaps = 21/276 (7%)
Query: 219 WYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTK 278
WY+ + G IS + +E GG G + + ++ G ++L V
Sbjct: 187 WYVKQCGG----TTRIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIY 237
Query: 279 ITRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGI 336
I + V V + + A V+ A+P LG+ I F P LP + I + +G
Sbjct: 238 IDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGS 293
Query: 337 ENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIE 393
K I+++ + FW ++ G ++ +Y L+ K G + ++ AR +
Sbjct: 294 VIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLA 353
Query: 394 KMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYER 450
+++ E K+L +A P+ Y +W + S G Y+ Y G
Sbjct: 354 RLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRV 413
Query: 451 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 486
LR PVD ++FAG T+ + G + GA G AA +
Sbjct: 414 LRQPVDRIYFAGTETATHWSGHMEGAVEAGERAARE 449
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
LHD+ VV+LE+RDRVGGR +T + VDLG S++ +N + + LGL Y
Sbjct: 23 LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT--QNRILRLAKELGLETY 80
Query: 106 RTSGDNSVLYDHDLESY 122
+ + +++ +SY
Sbjct: 81 KVNEVERLIHHVKGKSY 97
>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine
pdb|2XFU|B Chain B, Human Monoamine Oxidase B With Tranylcypromine
Length = 519
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 114/276 (41%), Gaps = 21/276 (7%)
Query: 219 WYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTK 278
WY+ + G IS + +E GG G + + ++ G ++L V
Sbjct: 186 WYVKQCGG----TTRIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIY 236
Query: 279 ITRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGI 336
I + V V + + A V+ A+P LG+ I F P LP + I + +G
Sbjct: 237 IDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGS 292
Query: 337 ENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIE 393
K I+++ + FW ++ G ++ +Y L+ K G + ++ AR +
Sbjct: 293 VIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLA 352
Query: 394 KMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYER 450
+++ E K+L +A P+ Y +W + S G Y+ Y G
Sbjct: 353 RLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRV 412
Query: 451 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 486
LR PVD ++FAG T+ + G + GA G AA +
Sbjct: 413 LRQPVDRIYFAGTETATHWSGYMEGAVEAGERAARE 448
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
LHD+ VV+LE+RDRVGGR +T + VDLG S++ +N + + LGL Y
Sbjct: 22 LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT--QNRILRLAKELGLETY 79
Query: 106 RTSGDNSVLYDHDLESY 122
+ + +++ +SY
Sbjct: 80 KVNEVERLIHHVKGKSY 96
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
pdb|1OJ9|A Chain A, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJ9|B Chain B, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJA|A Chain A, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJA|B Chain B, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJC|A Chain A, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJC|B Chain B, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJD|A Chain A, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|B Chain B, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|C Chain C, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|D Chain D, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|E Chain E, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|F Chain F, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|G Chain G, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|H Chain H, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|I Chain I, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|L Chain L, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1S2Q|A Chain A, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Q|B Chain B, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Y|A Chain A, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S2Y|B Chain B, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S3B|A Chain A, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3B|B Chain B, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|A Chain A, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|B Chain B, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|2BK3|A Chain A, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BK3|B Chain B, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BYB|A Chain A, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2BYB|B Chain B, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2C64|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C64|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C65|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C65|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C66|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C66|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C67|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C67|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C70|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C70|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2V5Z|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V5Z|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V60|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V60|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V61|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2V61|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2VRL|A Chain A, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRL|B Chain B, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRM|A Chain A, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VRM|B Chain B, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VZ2|A Chain A, Human Mao B In Complex With Mofegiline
pdb|2VZ2|B Chain B, Human Mao B In Complex With Mofegiline
pdb|2XCG|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XCG|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFN|A Chain A, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFN|B Chain B, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFP|A Chain A, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFP|B Chain B, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|A Chain A, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|B Chain B, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|3PO7|A Chain A, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|3PO7|B Chain B, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|4A79|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A79|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A7A|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
pdb|4A7A|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
Length = 520
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 114/276 (41%), Gaps = 21/276 (7%)
Query: 219 WYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTK 278
WY+ + G IS + +E GG G + + ++ G ++L V
Sbjct: 187 WYVKQCGG----TTRIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIY 237
Query: 279 ITRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGI 336
I + V V + + A V+ A+P LG+ I F P LP + I + +G
Sbjct: 238 IDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGS 293
Query: 337 ENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIE 393
K I+++ + FW ++ G ++ +Y L+ K G + ++ AR +
Sbjct: 294 VIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLA 353
Query: 394 KMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYER 450
+++ E K+L +A P+ Y +W + S G Y+ Y G
Sbjct: 354 RLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRV 413
Query: 451 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 486
LR PVD ++FAG T+ + G + GA G AA +
Sbjct: 414 LRQPVDRIYFAGTETATHWSGYMEGAVEAGERAARE 449
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
LHD+ VV+LE+RDRVGGR +T + VDLG S++ +N + + LGL Y
Sbjct: 23 LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT--QNRILRLAKELGLETY 80
Query: 106 RTSGDNSVLYDHDLESY 122
+ + +++ +SY
Sbjct: 81 KVNEVERLIHHVKGKSY 97
>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C73|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 114/276 (41%), Gaps = 21/276 (7%)
Query: 219 WYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTK 278
WY+ + G IS + +E GG G + + ++ G ++L V
Sbjct: 187 WYVKQCGG----TTRIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIY 237
Query: 279 ITRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGI 336
I + V V + + A V+ A+P LG+ I F P LP + I + +G
Sbjct: 238 IDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGS 293
Query: 337 ENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIE 393
K I+++ + FW ++ G ++ +Y L+ K G + ++ AR +
Sbjct: 294 VIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLA 353
Query: 394 KMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYER 450
+++ E K+L +A P+ Y +W + S G Y+ Y G
Sbjct: 354 RLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRV 413
Query: 451 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 486
LR PVD ++FAG T+ + G + GA G AA +
Sbjct: 414 LRQPVDRIYFAGTETATHWSGFMEGAVEAGERAARE 449
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
LHD+ VV+LE+RDRVGGR +T + VDLG S++ +N + + LGL Y
Sbjct: 23 LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT--QNRILRLAKELGLETY 80
Query: 106 RTSGDNSVLYDHDLESY 122
+ + +++ +SY
Sbjct: 81 KVNEVERLIHHVKGKSY 97
>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C75|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 114/276 (41%), Gaps = 21/276 (7%)
Query: 219 WYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTK 278
WY+ + G IS + +E GG G + + ++ G ++L V
Sbjct: 187 WYVKQCGG----TTRIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIY 237
Query: 279 ITRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGI 336
I + V V + + A V+ A+P LG+ I F P LP + I + +G
Sbjct: 238 IDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGS 293
Query: 337 ENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIE 393
K I+++ + FW ++ G ++ +Y L+ K G + ++ AR +
Sbjct: 294 VIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLA 353
Query: 394 KMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYER 450
+++ E K+L +A P+ Y +W + S G Y+ Y G
Sbjct: 354 RLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRV 413
Query: 451 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 486
LR PVD ++FAG T+ + G + GA G AA +
Sbjct: 414 LRQPVDRIYFAGTETATHWSGLMEGAVEAGERAARE 449
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
LHD+ VV+LE+RDRVGGR +T + VDLG S++ +N + + LGL Y
Sbjct: 23 LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT--QNRILRLAKELGLETY 80
Query: 106 RTSGDNSVLYDHDLESY 122
+ + +++ +SY
Sbjct: 81 KVNEVERLIHHVKGKSY 97
>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C76|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 114/276 (41%), Gaps = 21/276 (7%)
Query: 219 WYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTK 278
WY+ + G IS + +E GG G + + ++ G ++L V
Sbjct: 187 WYVKQCGG----TTRIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIY 237
Query: 279 ITRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGI 336
I + V V + + A V+ A+P LG+ I F P LP + I + +G
Sbjct: 238 IDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGS 293
Query: 337 ENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIE 393
K I+++ + FW ++ G ++ +Y L+ K G + ++ AR +
Sbjct: 294 VIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLA 353
Query: 394 KMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYER 450
+++ E K+L +A P+ Y +W + S G Y+ Y G
Sbjct: 354 RLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRV 413
Query: 451 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 486
LR PVD ++FAG T+ + G + GA G AA +
Sbjct: 414 LRQPVDRIYFAGTETATHWSGWMEGAVEAGERAARE 449
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
LHD+ VV+LE+RDRVGGR +T + VDLG S++ +N + + LGL Y
Sbjct: 23 LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT--QNRILRLAKELGLETY 80
Query: 106 RTSGDNSVLYDHDLESY 122
+ + +++ +SY
Sbjct: 81 KVNEVERLIHHVKGKSY 97
>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK4|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK5|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
pdb|2BK5|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
Length = 520
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 97/228 (42%), Gaps = 12/228 (5%)
Query: 267 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDW 324
G ++L V I + V V + + A V+ A+P LG+ I F P LP
Sbjct: 226 GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMM 281
Query: 325 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLV 381
+ I + +G K I+++ + FW ++ G ++ +Y L+ K G + ++
Sbjct: 282 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIM 341
Query: 382 YMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-Y 438
AR + +++ E K+L +A P+ Y +W + S G Y+ Y
Sbjct: 342 GFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTY 401
Query: 439 DTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 486
G LR PVD ++FAG T+ + G + GA G AA +
Sbjct: 402 FPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAARE 449
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
LHD+ VV+LE+RDRVGGR +T + VDLG S++ +N + + LGL Y
Sbjct: 23 LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT--QNRILRLAKELGLETY 80
Query: 106 RTSGDNSVLYDHDLESY 122
+ + +++ +SY
Sbjct: 81 KVNEVERLIHHVKGKSY 97
>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
pdb|2XFO|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
Length = 520
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 97/228 (42%), Gaps = 12/228 (5%)
Query: 267 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDW 324
G ++L V I + V V + + A V+ A+P LG+ I F P LP
Sbjct: 226 GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMM 281
Query: 325 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLV 381
+ I + +G K I+++ + FW ++ G ++ +Y L+ K G + ++
Sbjct: 282 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIM 341
Query: 382 YMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-Y 438
AR + +++ E K+L +A P+ Y +W + S G Y+ Y
Sbjct: 342 GFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTY 401
Query: 439 DTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 486
G LR PVD ++FAG T+ + G + GA G AA +
Sbjct: 402 FPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAARE 449
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
LHD+ VV+LE+RDRVGGR +T + VDLG S++ +N + + LGL Y
Sbjct: 23 LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT--QNRILRLAKELGLETY 80
Query: 106 RTSGDNSVLYDHDLESY 122
+ + +++ +SY
Sbjct: 81 KVNEVERLIHHVKGKSY 97
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
Length = 497
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 87/223 (39%), Gaps = 13/223 (5%)
Query: 258 LPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGK----TFVADAVVVAVPLGVLKAR 313
LP A + L RV KI + V VT + + + AD V+V AR
Sbjct: 256 LPTSMYQAIQEKVHLNARVIKIQQDVKEVTVTYQTSEKETLSVTADYVIVCTT--SRAAR 313
Query: 314 TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCS--YFLNL 371
IKFEP LP K A+ + KI + K FW + G S T Y+ N
Sbjct: 314 RIKFEPPLPPKKAHALRSVHYRSGTKIFLTCTKKFWEDDGIHGGKSTTDLPSRFIYYPNH 373
Query: 372 HKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQ-----YLVSHW 426
+ G V++ G A E + E + L I IQ ++ W
Sbjct: 374 NFPNGVGVIIAYGIGDDANYFEALDFEDCGDIVINDLSLIHQLPKEEIQAICRPSMIQRW 433
Query: 427 GTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSY 469
D ++G + T + E L PVD ++FAGE T+ ++
Sbjct: 434 SLDKYAMGGITTFTPYQFQHFSEALTAPVDRIYFAGEYTAQAH 476
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 106/454 (23%), Positives = 173/454 (38%), Gaps = 37/454 (8%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106
L A V ++E+RDRVGGR TD G +++G W+ + L ++ LGL +
Sbjct: 24 LRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS--PDQTALISLLDELGLKTFE 81
Query: 107 TSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQR 166
+ +Y + G+ P TK KE D++ +E D D++ Q
Sbjct: 82 RYREGESVYISSAGERTRY--TGDSFPTNETTK---------KEMDRLIDEMD-DLAAQI 129
Query: 167 AISIVFDRRPELRFFEHVSSSLPGISXXXXXXXXXXXXXXXXXEGLAHKVLQWYLCRMEG 226
+ P R + VS I+ G+ K +
Sbjct: 130 GAEEPW-AHPLARDLDTVSFKQWLINQSDDAEARDNIGLFIAG-GMLTKPAHSFSALQAV 187
Query: 227 WFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGL--DIRLGHRVTKITRHYI 284
AA A + S D++ +L ++ G V +A+ L D+ L V + +
Sbjct: 188 LMAASAGSFS-HLVDEDFIL---DKRVIGGMQQVSIRMAEALGDDVFLNAPVRTVKWNES 243
Query: 285 GVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHF 344
G V +G A V++AVP + I ++P LP + +G+ K+ +
Sbjct: 244 GATVLADGDIRVEASRVILAVPPNLYS--RISYDPPLPRRQHQMHQHQSLGLVIKVHAVY 301
Query: 345 DKVFWPNVEFLGVVSDTSYGCSYFLN-LHKATGH----CVLVYMPAGQLARDIEKMSDEA 399
+ FW G T +G S + ++ T H LV + + A + ++S E
Sbjct: 302 ETPFWREDGLSG----TGFGASEVVQEVYDNTNHEDDRGTLVAFVSDEKADAMFELSAEE 357
Query: 400 AANFAFTQLKKIL-PDASSPIQYLVSHWGTDANSLGSY--SYDTVGKSHDLYERLRIPVD 456
L + L P A P+ Y S WG++ + G Y S+D +G H R PV
Sbjct: 358 RKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGCYTASFD-LGGLHRYGADSRTPVG 416
Query: 457 NLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 490
+ F+ + G V GA G A D R
Sbjct: 417 PIHFSCSDIAAEGYGHVDGAVRMGQRTAADIIAR 450
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 90/448 (20%), Positives = 178/448 (39%), Gaps = 29/448 (6%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
L + V++LE+RDRVGGR +T + VD+G +++ +N + + LG+ Y
Sbjct: 40 LSEYKINVLVLEARDRVGGRTYTVRNEHVKWVDVGGAYVGPT--QNRILRLSKELGIETY 97
Query: 106 RTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQ 165
+ + + ++ ++Y P + ++ + D++ +E D Q
Sbjct: 98 KVNVNERLVQYVKGKTYPF----RGAFPPVWNPLAYLDYNNLWRTMDEMGKEIPVDAPWQ 153
Query: 166 RAISIVFDRRPELRFFEHVSSSLPGISXXXXXXXXXXXXXXXXXEGLAHKVLQWYLCRME 225
+ +D+ + + + L WY+ +
Sbjct: 154 ARHAQEWDKMTMKDLIDKICWTKTAREFAYLFVNINVTSEPHEVSALW---FLWYVRQCG 210
Query: 226 GWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIG 285
G A S+ + +E GG G + + ++ G ++L VT I +
Sbjct: 211 G----TARIFSVTNGGQERKFVGGSGQVSEQIMGLL-----GDKVKLSSPVTYIDQTDDN 261
Query: 286 VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFD 345
+ V + + V+ A+P +L A+ I F+P LP + I L +G K ++++
Sbjct: 262 IIVETLNHEHYECKYVISAIP-PILTAK-IHFKPELPPERNQLIQRLPMGAVIKCMVYYK 319
Query: 346 KVFWPNVEFLG--VVSDTSYGCSYFLNLHKATGH--CVLVYMPAGQLARDIEKMSDEAAA 401
+ FW ++ G ++ D + L+ K G ++ ++ A + R + K+ +
Sbjct: 320 EAFWKKKDYCGCMIIEDEEAPIAITLDDTKPDGSLPAIMGFILARKADR-LAKLHKDIRK 378
Query: 402 NFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVDNL 458
K+L +A P+ Y +W + S G Y+ Y G +R PV +
Sbjct: 379 RKICELYAKVLGSQEALYPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVGRI 438
Query: 459 FFAGEATSMSYPGSVHGAFSTGLMAAED 486
+FAG T+ + G + GA G AA +
Sbjct: 439 YFAGTETATQWSGYMEGAVEAGERAARE 466
>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
Length = 519
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 96/228 (42%), Gaps = 12/228 (5%)
Query: 267 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDW 324
G ++L V I + V V + + A V+ A+P LG+ I F P LP
Sbjct: 225 GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMM 280
Query: 325 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLV 381
+ I + +G K I+++ + FW ++ G ++ + L+ K G + ++
Sbjct: 281 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAATLDDTKPEGNYAAIM 340
Query: 382 YMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-Y 438
AR + +++ E K+L +A P+ Y +W + S G Y+ Y
Sbjct: 341 GFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTY 400
Query: 439 DTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 486
G LR PVD ++FAG T+ + G + GA G AA +
Sbjct: 401 FPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAARE 448
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
LHD+ VV+LE+RDRVGGR +T + VDLG S++ +N + + LGL Y
Sbjct: 22 LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT--QNRILRLAKELGLETY 79
Query: 106 RTSGDNSVLYDHDLESY 122
+ + +++ +SY
Sbjct: 80 KVNEVERLIHHVKGKSY 96
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 105/454 (23%), Positives = 173/454 (38%), Gaps = 37/454 (8%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106
L A V ++E+RDRVGGR TD G +++G W+ + L ++ LGL +
Sbjct: 24 LRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS--PDQTALISLLDELGLKTFE 81
Query: 107 TSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQR 166
+ +Y + G+ P TK KE D++ +E D D++ Q
Sbjct: 82 RYREGESVYISSAGERTRY--TGDSFPTNETTK---------KEMDRLIDEMD-DLAAQI 129
Query: 167 AISIVFDRRPELRFFEHVSSSLPGISXXXXXXXXXXXXXXXXXEGLAHKVLQWYLCRMEG 226
+ P R + VS I+ G+ K +
Sbjct: 130 GAEEPW-AHPLARDLDTVSFKQWLINQSDDAEARDNIGLFIAG-GMLTKPAHSFSALQAV 187
Query: 227 WFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGL--DIRLGHRVTKITRHYI 284
AA A + S D++ +L ++ G V +A+ L D+ L V + +
Sbjct: 188 LMAASAGSFS-HLVDEDFIL---DKRVIGGMQQVSIRMAEALGDDVFLNAPVRTVKWNES 243
Query: 285 GVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHF 344
G V +G A V++AVP + I ++P LP + +G+ K+ +
Sbjct: 244 GATVLADGDIRVEASRVILAVPPNLYS--RISYDPPLPRRQHQMHQHQSLGLVIKVHAVY 301
Query: 345 DKVFWPNVEFLGVVSDTSYGCSYFLN-LHKATGH----CVLVYMPAGQLARDIEKMSDEA 399
+ FW G T +G S + ++ T H LV + + A + ++S E
Sbjct: 302 ETPFWREDGLSG----TGFGASEVVQEVYDNTNHEDDRGTLVAFVSDEKADAMFELSAEE 357
Query: 400 AANFAFTQLKKIL-PDASSPIQYLVSHWGTDANSLGSY--SYDTVGKSHDLYERLRIPVD 456
L + L P A P+ Y S WG++ + G+Y S+D +G H R PV
Sbjct: 358 RKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGAYAASFD-LGGLHRYGADSRTPVG 416
Query: 457 NLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 490
+ F+ + V GA G A D R
Sbjct: 417 PIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIAR 450
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c Mutant
Length = 453
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 105/454 (23%), Positives = 172/454 (37%), Gaps = 37/454 (8%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106
L A V ++E+RDRVGGR TD G +++G W+ + L ++ LGL +
Sbjct: 24 LRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS--PDQTALISLLDELGLKTFE 81
Query: 107 TSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQR 166
+ +Y + G+ P TK KE D++ +E D D++ Q
Sbjct: 82 RYREGESVYISSAGERTRY--TGDSFPTNETTK---------KEMDRLIDEMD-DLAAQI 129
Query: 167 AISIVFDRRPELRFFEHVSSSLPGISXXXXXXXXXXXXXXXXXEGLAHKVLQWYLCRMEG 226
+ P R + VS I+ G+ K +
Sbjct: 130 GAEEPW-AHPLARDLDTVSFKQWLINQSDDAEARDNIGLFIAG-GMLTKPAHSFSALQAV 187
Query: 227 WFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGL--DIRLGHRVTKITRHYI 284
AA A + S D++ +L ++ G V +A+ L D+ L V + +
Sbjct: 188 LMAASAGSFS-HLVDEDFIL---DKRVIGGMQQVSIRMAEALGDDVFLNAPVRTVKWNES 243
Query: 285 GVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHF 344
G V +G A V++AVP + I ++P LP + +G+ K+ +
Sbjct: 244 GATVLADGDIRVEASRVILAVPPNLYS--RISYDPPLPRRQHQMHQHQSLGLVIKVHAVY 301
Query: 345 DKVFWPNVEFLGVVSDTSYGCSYFLN-LHKATGH----CVLVYMPAGQLARDIEKMSDEA 399
+ FW G T +G S + ++ T H LV + + A + ++S E
Sbjct: 302 ETPFWREDGLSG----TGFGASEVVQEVYDNTNHEDDRGTLVAFVSDEKADAMFELSAEE 357
Query: 400 AANFAFTQLKKIL-PDASSPIQYLVSHWGTDANSLGSY--SYDTVGKSHDLYERLRIPVD 456
L + L P A P+ Y S WG++ + G Y S+D +G H R PV
Sbjct: 358 RKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGCYAASFD-LGGLHRYGADSRTPVG 416
Query: 457 NLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 490
+ F+ + V GA G A D R
Sbjct: 417 PIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIAR 450
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 105/454 (23%), Positives = 172/454 (37%), Gaps = 37/454 (8%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106
L A V ++E+RDRVGGR TD G +++G W+ + L ++ LGL +
Sbjct: 24 LRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS--PDQTALISLLDELGLKTFE 81
Query: 107 TSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQR 166
+ +Y + G+ P TK KE D++ +E D D++ Q
Sbjct: 82 RYREGESVYISSAGERTRY--TGDSFPTNETTK---------KEMDRLIDEMD-DLAAQI 129
Query: 167 AISIVFDRRPELRFFEHVSSSLPGISXXXXXXXXXXXXXXXXXEGLAHKVLQWYLCRMEG 226
+ P R + VS I+ G+ K +
Sbjct: 130 GAEEPW-AHPLARDLDTVSFKQWLINQSDDAEARDNIGLFIAG-GMLTKPAHSFSALQAV 187
Query: 227 WFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGL--DIRLGHRVTKITRHYI 284
AA A + S D++ +L ++ G V +A+ L D+ L V + +
Sbjct: 188 LMAASAGSFS-HLVDEDFIL---DKRVIGGMQQVSIRMAEALGDDVFLNAPVRTVKWNES 243
Query: 285 GVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHF 344
G V +G A V++AVP + I ++P LP + +G+ K+ +
Sbjct: 244 GATVLADGDIRVEASRVILAVPPNLYS--RISYDPPLPRRQHQMHQHQSLGLVIKVHAVY 301
Query: 345 DKVFWPNVEFLGVVSDTSYGCSYFLN-LHKATGH----CVLVYMPAGQLARDIEKMSDEA 399
+ FW G T +G S + ++ T H LV + + A + ++S E
Sbjct: 302 ETPFWREDGLSG----TGFGASEVVQEVYDNTNHEDDRGTLVAFVSDEKADAMFELSAEE 357
Query: 400 AANFAFTQLKKIL-PDASSPIQYLVSHWGTDANSLGSY--SYDTVGKSHDLYERLRIPVD 456
L + L P A P+ Y S WG++ + G Y S+D +G H R PV
Sbjct: 358 RKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGCYAASFD-LGGLHRYGADSRTPVG 416
Query: 457 NLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 490
+ F+ + V GA G A D R
Sbjct: 417 PIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIAR 450
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex With
L- Phenylalanine
Length = 486
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 91/228 (39%), Gaps = 14/228 (6%)
Query: 270 IRLGHRVTKITRHYIGVKVTVEGGK----TFVADAVVVAVPLGVLKARTIKFEPRLPDWK 325
+ L +V KI ++ V V + + AD V+V R IKFEP LP K
Sbjct: 255 VHLNAQVIKIQKNAEKVTVVYQTPAKEMASVTADYVIVCTTSRA--TRRIKFEPPLPPKK 312
Query: 326 EAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCS--YFLNLHKATGHCVLVYM 383
A+ + KI + K FW + G S T Y+ N + +G V++
Sbjct: 313 AHALRSVHYRSGTKIFLTCTKKFWEDEGIHGGKSTTDLPSRFIYYPNHNFTSGVGVIIAY 372
Query: 384 PAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQY-----LVSHWGTDANSLGSYSY 438
G A + + + A+ L I IQ ++ W D ++G +
Sbjct: 373 GIGDDANFFQALDFKDCADIVINDLSLIHQLPREEIQTFCYPSMIQKWSLDKYAMGGITT 432
Query: 439 DTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 486
T + E L VD ++FAGE T+ ++ G + +GL AA D
Sbjct: 433 FTPYQFQHFSESLTASVDRIYFAGEHTAEAH-GWIDSTIKSGLRAARD 479
>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
Arthrobacter Nicotinovorans
pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound 6-Hydroxy-L-Nicotine
Oxidase From Arthrobacter Nicotinovorans
pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine Oxidase
With Substrate Bound At Active Site And Inhibitor At
Exit Cavity
pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Intermediate
Methylmyosmine Product Formed During Catalytic Turnover
pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final Ketone
Product Formed During Catalytic Turnover
pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product Bound
At Active Site
pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor
Bound At Active Site And Turnover Product At Exit Cavity
pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Nicotinamide
Length = 431
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 17/216 (7%)
Query: 269 DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAA 328
+IRL VT I + V VTV+ G F A +V+VA P+ R I F P LP+ + +
Sbjct: 219 EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTW--RRIVFTPALPERRRSV 276
Query: 329 IDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQL 388
I++ G KI++H + +E +G D + Y + ++ + +G
Sbjct: 277 IEEGHGGQGLKILIHV-RGAEAGIECVG---DGIFPTLYDYCEVSESERLLVAFTDSGSF 332
Query: 389 -ARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDL 447
DI + D A + +++ + D W D G + VG+ +
Sbjct: 333 DPTDIGAVKD--AVLYYLPEVEVLGIDYHD--------WIADPLFEGPWVAPRVGQFSRV 382
Query: 448 YERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMA 483
++ L P + F G S+ +PG + GA T A
Sbjct: 383 HKELGEPAGRIHFVGSDVSLEFPGYIEGALETAECA 418
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP---VDLGASWLHGVCQENP-LAPVISRLGL 102
L +A KV+LLE +R+GGR ++ S P V++G ++LH + +P LA + R G+
Sbjct: 20 LTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLH--RKHHPRLAAELDRYGI 77
Query: 103 PLYRTS 108
P S
Sbjct: 78 PTAAAS 83
>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
Length = 425
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 17/216 (7%)
Query: 269 DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAA 328
+IRL VT I + V VTV+ G F A +V+VA P+ R I F P LP+ + +
Sbjct: 219 EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTW--RRIVFTPALPERRRSV 276
Query: 329 IDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQL 388
I++ G KI++H + +E +G D + Y + ++ + +G
Sbjct: 277 IEEGHGGQGLKILIHV-RGAEAGIECVG---DGIFPTLYDYCEVSESERLLVAFTDSGSF 332
Query: 389 -ARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDL 447
DI + D A + +++ + D W D G + VG+ +
Sbjct: 333 DPTDIGAVKD--AVLYYLPEVEVLGIDYHD--------WIADPLFEGPWVAPRVGQFSRV 382
Query: 448 YERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMA 483
++ L P + F G S+ +PG + GA T A
Sbjct: 383 HKELGEPAGRIHFVGSDVSLEFPGYIEGALETAECA 418
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP---VDLGASWLHGVCQENP-LAPVISRLGL 102
L +A KV+LLE +R+GGR ++ S P V++G ++LH + +P LA + R G+
Sbjct: 20 LTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLH--RKHHPRLAAELDRYGI 77
Query: 103 PLYRTS 108
P S
Sbjct: 78 PTAAAS 83
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 50 ASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLH 85
A FK +LLE+RDR+GGR + G+P ++G +W+H
Sbjct: 61 AGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVH 96
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 81/214 (37%), Gaps = 11/214 (5%)
Query: 272 LGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDD 331
G V + +VT G+ FVA VV +PL VL TI+F P L + +A+
Sbjct: 275 FGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLS--TIQFSPALSTERISAMQA 332
Query: 332 LGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARD 391
V + K+ D + G+ + C + G+ LV G A
Sbjct: 333 GHVSMCTKVHAEVDNK--DMRSWTGIAYPFNKLCYAIGDGTTPAGNTHLVCF--GTDANH 388
Query: 392 IEKMSDEAAANFAFTQLKKILPDASSPIQYLVSH-WGTDANSLGSYSYDTVGKSHDLYER 450
I+ D A QL + ++ LV H W D + G++ + G + +
Sbjct: 389 IQPDEDVRETLKAVGQLAP----GTFGVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQG 444
Query: 451 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 484
LR + FA ++ + + GA G AA
Sbjct: 445 LREKHGGVVFANSDWALGWRSFIDGAIEEGTRAA 478
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 50 ASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLH 85
A FK +LLE+RDR+GGR + G+P ++G +W+H
Sbjct: 61 AGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVH 96
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/223 (20%), Positives = 83/223 (37%), Gaps = 29/223 (13%)
Query: 272 LGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDD 331
G V + +VT G+ FVA VV +PL VL TI+F P L + +A+
Sbjct: 275 FGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLS--TIQFSPALSTERISAMQA 332
Query: 332 LGVG--------IENKIIMHFDKVFWPNVEFLGVVSD--TSYGCSYFLNLHKATGHCVLV 381
V ++NK + + + +P + + D T G ++ + + H
Sbjct: 333 GHVSMCTKVHAEVDNKDMRSWTGIAYPFNKLCYAIGDGTTPAGNTHLVCFGNSANHI--- 389
Query: 382 YMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTV 441
P + ++ + A F +L + +W D + G++ +
Sbjct: 390 -QPDEDVRETLKAVGQLAPGTFGVKRL-------------VFHNWVKDEFAKGAWFFSRP 435
Query: 442 GKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 484
G + + LR + FA ++ + + GA G AA
Sbjct: 436 GMVSECLQGLREKHGGVVFANSDWALGWRSFIDGAIEEGTRAA 478
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 50 ASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLH 85
A FK +LLE+RDR+GGR + G+P ++G +W+H
Sbjct: 61 AGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVH 96
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 81/214 (37%), Gaps = 11/214 (5%)
Query: 272 LGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDD 331
G V + +VT G+ FVA VV +PL VL TI+F P L + +A+
Sbjct: 275 FGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLS--TIQFSPALSTERISAMQA 332
Query: 332 LGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARD 391
V + K+ D + G+ + C + G+ LV G A
Sbjct: 333 GHVSMCTKVHAEVDNK--DMRSWTGIAYPFNKLCYAIGDGTTPAGNTHLVCF--GTDANH 388
Query: 392 IEKMSDEAAANFAFTQLKKILPDASSPIQYLVSH-WGTDANSLGSYSYDTVGKSHDLYER 450
I+ D A QL + ++ LV H W D + G++ + G + +
Sbjct: 389 IQPDEDVRETLKAVGQLAP----GTFGVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQG 444
Query: 451 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 484
LR + FA ++ + + GA G AA
Sbjct: 445 LREKHGGVVFANSDWALGWRSFIDGAIEEGTRAA 478
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
Length = 482
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106
L A V +LE+RDRVGGR TD G +++G W+ + L ++ LGL +Y
Sbjct: 26 LKKAGLSVAVLEARDRVGGRTWTDTIDGAMLEIGGQWVS--PDQTVLMELLDELGLKMYS 83
Query: 107 TSGDNSVLY 115
D +Y
Sbjct: 84 RYRDGESVY 92
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 71/180 (39%), Gaps = 7/180 (3%)
Query: 267 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKE 326
G D+ L V I GV V E T A V++AVP + + F+P LP +
Sbjct: 228 GDDVVLNSPVRTIKWDENGVSVVSERA-TVNARFVIMAVPPNLYS--RVSFDPPLPRRQH 284
Query: 327 AAIDDLGVGIENKIIMHFDKVFWPNVEFLGV-VSDTSYGCSYFLNLHKATGHCVLVYMPA 385
+G+ K+ +D FW G S + + N + LV +
Sbjct: 285 QMHQHQSLGLVIKVHAVYDTPFWREEGLSGTGFSAGALVQEVYDNTNHGDSRGTLVGFVS 344
Query: 386 GQLARDIEKMSDEAAANFAFTQLKKILPD-ASSPIQYLVSHWGTDANSLGSY--SYDTVG 442
+ A + ++S E + L D A +P Y S WG++ + G+Y SYD G
Sbjct: 345 DEKADAVFELSAEDRKKAILESIAGFLGDKALTPEVYYESDWGSEEWTRGAYASSYDLGG 404
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 87/231 (37%), Gaps = 14/231 (6%)
Query: 270 IRLGHRVTKITRHYIGVKVTVEG----GKTFVADAVVVAVPLGVLKARTIKFEPRLPDWK 325
+ +V KI ++ V V E + AD V+V + R IKF P L K
Sbjct: 255 VHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAV--RLIKFNPPLLPKK 312
Query: 326 EAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCS--YFLNLHKATGHCVLVYM 383
A+ + KI + FW + G S T Y+ N + G V++
Sbjct: 313 AHALRSVHYRSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGVIIAY 372
Query: 384 PAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQY-----LVSHWGTDANSLGSYSY 438
G A + + + A+ F L I IQ ++ W D ++G +
Sbjct: 373 GIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGITT 432
Query: 439 DTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 489
T + + L ++FAGE T+ ++ G + +GL AA D +
Sbjct: 433 FTPYQFQHFSDPLTASQGRIYFAGEYTAQAH-GWIDSTIKSGLRAARDVNL 482
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 227 WFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGV 286
W AE I L+ D+ +LP + R V +GL IR G RVT + G
Sbjct: 186 WHRLGAEVIVLEYMDR--ILPTMDLEVSRAAERVFKK--QGLTIRTGVRVTAVVPEAKGA 241
Query: 287 KVTVEGGKTFVADAVVVAV 305
+V +EGG+ AD V+VAV
Sbjct: 242 RVELEGGEVLEADRVLVAV 260
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 53 KVVLLESRDRVGGRVHTDYSFGFPVDLG----ASWLHGVCQENPLAPVI 97
KVV LE RDRV G +H G V +G +WL G + N + +I
Sbjct: 212 KVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEII 260
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 53 KVVLLESRDRVGGRVHTDYSFGFPVDLG----ASWLHGVCQENPLAPVI 97
KVV LE RDRV G +H+ G V +G WL G + N + +I
Sbjct: 423 KVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRMGEII 471
>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3URH|B Chain B, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 491
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 18/126 (14%)
Query: 266 KGLDIRLGHRVTKITRHYIGVKVT---VEGGKTFVADAVVVAVPLGVLKARTIKFEPRLP 322
+G+D +LG +VT + G KVT V+GG+ DA VV + G R P
Sbjct: 252 QGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATG-----------RKP 300
Query: 323 DWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVY 382
+ GV ++++ + D+ F ++ + + D G HKA V V
Sbjct: 301 STDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGPXL---AHKAEDEGVAVA 357
Query: 383 -MPAGQ 387
+ AGQ
Sbjct: 358 EIIAGQ 363
>pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Complexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4E|A Chain A, Crystal Structure Of The Flavocytochrome C Fumarate
Reductase Of Shewanella Putrefaciens Strain Mr-1
Complexed With Fumarate
Length = 572
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 262 NTLAKGLDIRLGHRVTKITRHYIG------VKVTVEGGKTFVADAVVVAV-PLGVLKART 314
N + +G DIRL RV +I G VK G ADAVV+A R
Sbjct: 264 NAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERV 323
Query: 315 IKFEPRLPDWK 325
K++P+L +K
Sbjct: 324 SKYDPKLKGFK 334
>pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|B Chain B, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|C Chain C, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|D Chain D, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
Length = 572
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 262 NTLAKGLDIRLGHRVTKITRHYIG------VKVTVEGGKTFVADAVVVAV-PLGVLKART 314
N + +G DIRL RV +I G VK G ADAVV+A R
Sbjct: 264 NAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERV 323
Query: 315 IKFEPRLPDWK 325
K++P+L +K
Sbjct: 324 SKYDPKLKGFK 334
>pdb|4FAI|A Chain A, Crystal Structure Of Mitochondrial Isoform Of Glutaminyl
Cyclase From Drosophila Melanogaster
pdb|4FAI|B Chain B, Crystal Structure Of Mitochondrial Isoform Of Glutaminyl
Cyclase From Drosophila Melanogaster
Length = 330
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 343 HFDKVFWPNVEFLGVVSDTSYGCSYFLNL 371
H+D + P VEFLG +D++ C+ LNL
Sbjct: 113 HYDSKYMPGVEFLG-ATDSAVPCAMLLNL 140
>pdb|2TLD|E Chain E, Crystal Structure Of An Engineered Subtilisin Inhibitor
Complexed With Bovine Trypsin
Length = 220
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 13/96 (13%)
Query: 394 KMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRI 453
K+ A+ N + AS+ Q L+S WG +S SY D+ + L+
Sbjct: 89 KLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYP--------DVLKCLKA 140
Query: 454 PVDNLFFAGEATSMSYPGSV-HGAFSTGLMAAEDCR 488
P+ + + +YPG + F GL + C+
Sbjct: 141 PI----LSDSSCKSAYPGQITSNMFCAGLEGGDSCQ 172
>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From
Pantoea Ananatis
Length = 501
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGAS 82
L A V+LLE RD+ GGR + GF D G +
Sbjct: 20 LQAAGIPVLLLEQRDKPGGRAYVYEDQGFTFDAGPT 55
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 27/160 (16%)
Query: 227 WFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVT--KITRHYI 284
W AE L++ DK LP + + L V+ +GL+IRLG RVT ++ + +
Sbjct: 199 WARLGAEVTVLEALDK--FLPAADEQIAKEALKVLTK--QGLNIRLGARVTASEVKKKQV 254
Query: 285 GVKVTVEGG---KTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKII 341
V T G +TF D ++VAV R P + D GV ++ +
Sbjct: 255 TVTFTDANGEQKETF--DKLIVAV-------------GRRPVTTDLLAADSGVTLDERGF 299
Query: 342 MHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLV 381
++ D +V + + D G + HKA+ V+V
Sbjct: 300 IYVDDHCKTSVPGVFAIGDVVRGA---MLAHKASEEGVMV 336
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 132 VPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRP 176
+ LV EA I K T K H+ D+S +RA++ +FD P
Sbjct: 34 IADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHP 78
>pdb|3FIJ|A Chain A, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|B Chain B, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|C Chain C, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|D Chain D, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|E Chain E, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|F Chain F, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|G Chain G, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|H Chain H, Crystal Structure Of A Uncharacterized Protein Lin1909
Length = 254
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 259 PVI----NTLAKGLDIRLGHRVTKITRHYI 284
PVI N L KG+D+ GHRVT + Y+
Sbjct: 5 PVIGITGNRLVKGVDVFYGHRVTYTQQRYV 34
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 383 MPAGQLAR-DIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTV 441
MPA ++R D + D + F K+LP AS S WG A+ G+ D
Sbjct: 337 MPAAFISRKDGLLLKDNSKKTITFNATPKVLPTASDTKLSRFSSWGLTAD--GNIKPDIA 394
Query: 442 GKSHDLYERLRIPVDNLFFAGEATSMSYP 470
D+ L +N + TSMS P
Sbjct: 395 APGQDI---LSSVANNKYAKLSGTSMSAP 420
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,789,215
Number of Sequences: 62578
Number of extensions: 608363
Number of successful extensions: 1533
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1345
Number of HSP's gapped (non-prelim): 118
length of query: 520
length of database: 14,973,337
effective HSP length: 103
effective length of query: 417
effective length of database: 8,527,803
effective search space: 3556093851
effective search space used: 3556093851
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)