Query 010001
Match_columns 520
No_of_seqs 165 out of 2217
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 19:52:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010001.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010001hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02268 probable polyamine ox 100.0 2E-56 4.3E-61 449.9 47.8 434 29-491 1-434 (435)
2 PLN03000 amine oxidase 100.0 5.7E-47 1.2E-51 388.8 43.9 429 26-497 182-629 (881)
3 PLN02529 lysine-specific histo 100.0 1.8E-46 3.8E-51 385.0 44.2 427 26-495 158-602 (738)
4 KOG0029 Amine oxidase [Seconda 100.0 7.7E-47 1.7E-51 374.0 36.2 440 25-493 12-461 (501)
5 PLN02328 lysine-specific histo 100.0 2.1E-45 4.6E-50 378.2 43.6 430 26-498 236-686 (808)
6 PLN02676 polyamine oxidase 100.0 9.8E-45 2.1E-49 364.4 43.2 425 26-494 24-476 (487)
7 PLN02976 amine oxidase 100.0 2.2E-44 4.9E-49 377.8 45.8 450 26-493 691-1188(1713)
8 PLN02568 polyamine oxidase 100.0 4.6E-44 1E-48 361.4 45.1 442 26-490 3-534 (539)
9 COG1231 Monoamine oxidase [Ami 100.0 1.1E-41 2.4E-46 319.4 29.8 420 26-492 5-448 (450)
10 KOG0685 Flavin-containing amin 100.0 7.3E-41 1.6E-45 313.1 32.6 427 26-491 19-491 (498)
11 TIGR00562 proto_IX_ox protopor 100.0 3.6E-40 7.9E-45 335.1 31.9 405 28-492 2-461 (462)
12 PRK12416 protoporphyrinogen ox 100.0 1.5E-39 3.3E-44 329.7 33.6 408 29-491 2-461 (463)
13 PLN02576 protoporphyrinogen ox 100.0 1.9E-38 4.1E-43 324.9 30.3 400 26-492 10-488 (496)
14 PRK11883 protoporphyrinogen ox 100.0 3.6E-38 7.7E-43 320.2 31.4 399 29-489 1-450 (451)
15 COG1232 HemY Protoporphyrinoge 100.0 1E-37 2.2E-42 301.2 29.7 403 29-488 1-443 (444)
16 PRK07233 hypothetical protein; 100.0 6.4E-37 1.4E-41 309.6 31.6 402 30-492 1-432 (434)
17 PLN02612 phytoene desaturase 100.0 3.3E-36 7.1E-41 308.4 36.2 431 26-492 91-549 (567)
18 TIGR02731 phytoene_desat phyto 100.0 5.6E-36 1.2E-40 302.8 34.9 421 30-488 1-453 (453)
19 PF01593 Amino_oxidase: Flavin 100.0 2.1E-36 4.5E-41 307.4 29.3 235 252-488 206-450 (450)
20 PRK07208 hypothetical protein; 100.0 1.4E-35 3.1E-40 302.3 31.9 403 26-490 2-460 (479)
21 PLN02487 zeta-carotene desatur 100.0 2E-34 4.4E-39 291.0 32.2 427 26-494 73-556 (569)
22 TIGR02732 zeta_caro_desat caro 100.0 9.4E-34 2E-38 285.1 30.7 418 30-488 1-474 (474)
23 TIGR03467 HpnE squalene-associ 100.0 2.9E-33 6.4E-38 281.7 32.2 388 42-488 1-418 (419)
24 TIGR02733 desat_CrtD C-3',4' d 100.0 2.8E-32 6E-37 278.5 35.4 438 28-489 1-490 (492)
25 TIGR02734 crtI_fam phytoene de 100.0 5.3E-32 1.2E-36 277.3 24.3 427 31-490 1-491 (502)
26 TIGR02730 carot_isom carotene 100.0 1.9E-30 4.1E-35 264.4 32.2 435 29-490 1-491 (493)
27 COG3380 Predicted NAD/FAD-depe 100.0 4.1E-31 8.9E-36 229.0 18.1 325 29-491 2-331 (331)
28 COG2907 Predicted NAD/FAD-bind 100.0 3E-28 6.5E-33 218.3 22.4 281 26-352 6-311 (447)
29 KOG1276 Protoporphyrinogen oxi 100.0 7.9E-28 1.7E-32 221.9 24.8 409 26-488 9-490 (491)
30 COG1233 Phytoene dehydrogenase 99.9 1.9E-26 4.2E-31 232.7 23.1 256 27-310 2-282 (487)
31 COG3349 Uncharacterized conser 99.9 2.1E-25 4.5E-30 214.5 18.8 428 29-496 1-468 (485)
32 KOG4254 Phytoene desaturase [C 99.9 3.4E-22 7.4E-27 185.5 24.2 238 244-490 250-545 (561)
33 TIGR00031 UDP-GALP_mutase UDP- 99.8 1.3E-19 2.8E-24 174.4 18.1 234 28-310 1-248 (377)
34 PRK13977 myosin-cross-reactive 99.8 2.5E-17 5.5E-22 163.6 23.6 72 26-100 20-97 (576)
35 PTZ00363 rab-GDP dissociation 99.8 1.5E-17 3.2E-22 164.1 17.0 239 25-306 1-287 (443)
36 PF13450 NAD_binding_8: NAD(P) 99.7 8.1E-18 1.8E-22 120.0 5.3 68 33-100 1-68 (68)
37 COG2081 Predicted flavoprotein 99.7 1.5E-15 3.2E-20 141.5 20.1 59 248-306 100-164 (408)
38 COG0562 Glf UDP-galactopyranos 99.6 4.2E-13 9E-18 120.6 19.5 70 28-99 1-73 (374)
39 PF01266 DAO: FAD dependent ox 99.5 2.4E-13 5.3E-18 133.8 17.4 43 266-309 160-203 (358)
40 COG0644 FixC Dehydrogenases (f 99.5 7.2E-12 1.6E-16 124.3 26.3 43 27-69 2-44 (396)
41 COG1635 THI4 Ribulose 1,5-bisp 99.5 2.4E-13 5.2E-18 115.5 13.0 69 27-105 29-97 (262)
42 PRK08773 2-octaprenyl-3-methyl 99.5 2.4E-11 5.1E-16 121.0 26.5 50 260-309 119-169 (392)
43 PF03486 HI0933_like: HI0933-l 99.5 2.6E-13 5.7E-18 132.7 11.8 41 266-306 122-163 (409)
44 PRK10157 putative oxidoreducta 99.5 2.7E-12 6E-17 128.3 19.4 40 27-66 4-43 (428)
45 PRK09126 hypothetical protein; 99.5 2.8E-11 6.1E-16 120.6 26.6 44 266-309 124-167 (392)
46 PRK07364 2-octaprenyl-6-methox 99.5 4E-11 8.7E-16 120.5 27.0 40 24-63 14-53 (415)
47 TIGR01988 Ubi-OHases Ubiquinon 99.5 3.3E-11 7.2E-16 119.9 26.2 50 260-309 112-163 (385)
48 PRK05714 2-octaprenyl-3-methyl 99.4 6.6E-11 1.4E-15 118.4 26.9 52 259-310 117-169 (405)
49 PRK12409 D-amino acid dehydrog 99.4 2.1E-11 4.6E-16 122.1 22.7 39 29-67 2-40 (410)
50 PRK11259 solA N-methyltryptoph 99.4 5.7E-11 1.2E-15 117.8 25.4 50 259-309 154-204 (376)
51 TIGR01377 soxA_mon sarcosine o 99.4 9.5E-11 2.1E-15 116.3 25.2 50 258-308 149-199 (380)
52 PF01946 Thi4: Thi4 family; PD 99.4 1.3E-12 2.8E-17 112.1 9.3 69 27-105 16-84 (230)
53 PRK10015 oxidoreductase; Provi 99.4 1.3E-10 2.9E-15 116.1 25.2 39 27-65 4-42 (429)
54 TIGR01984 UbiH 2-polyprenyl-6- 99.4 1.5E-10 3.2E-15 115.0 25.5 50 260-309 111-162 (382)
55 PRK07608 ubiquinone biosynthes 99.4 2.8E-10 6.1E-15 113.3 27.2 49 260-309 117-167 (388)
56 COG0654 UbiH 2-polyprenyl-6-me 99.4 1.9E-10 4.1E-15 114.0 25.4 51 260-310 110-163 (387)
57 PRK08013 oxidoreductase; Provi 99.4 5E-10 1.1E-14 111.6 28.2 44 267-310 126-169 (400)
58 TIGR02032 GG-red-SF geranylger 99.4 2.8E-10 6.2E-15 108.8 25.6 37 29-65 1-37 (295)
59 COG0579 Predicted dehydrogenas 99.4 1.1E-11 2.4E-16 119.9 14.8 43 27-69 2-46 (429)
60 PRK07494 2-octaprenyl-6-methox 99.4 3.4E-10 7.5E-15 112.6 26.1 51 259-309 116-167 (388)
61 PRK07333 2-octaprenyl-6-methox 99.4 3.3E-10 7.1E-15 113.4 25.6 50 260-309 117-167 (403)
62 TIGR00292 thiazole biosynthesi 99.4 2.1E-11 4.5E-16 112.0 15.4 42 27-68 20-61 (254)
63 PRK05732 2-octaprenyl-6-methox 99.4 4.6E-10 9.9E-15 112.1 26.4 44 266-309 126-169 (395)
64 PRK00711 D-amino acid dehydrog 99.4 3.2E-10 6.9E-15 114.0 25.3 41 29-69 1-41 (416)
65 PRK08850 2-octaprenyl-6-methox 99.4 2.4E-10 5.3E-15 114.2 24.1 51 259-309 116-168 (405)
66 PRK08020 ubiF 2-octaprenyl-3-m 99.4 4.2E-10 9.1E-15 112.1 25.7 43 267-309 127-169 (391)
67 PRK04176 ribulose-1,5-biphosph 99.3 2E-11 4.4E-16 112.5 14.3 42 27-68 24-65 (257)
68 PRK11728 hydroxyglutarate oxid 99.3 1.8E-11 4E-16 121.7 13.3 51 258-309 153-204 (393)
69 PRK08849 2-octaprenyl-3-methyl 99.3 1.4E-09 3.1E-14 107.8 26.7 44 267-310 125-168 (384)
70 PRK07588 hypothetical protein; 99.3 4.6E-10 1E-14 111.7 23.2 49 262-310 111-159 (391)
71 PRK06847 hypothetical protein; 99.3 4.2E-10 9.1E-15 111.5 22.9 44 266-309 120-163 (375)
72 PF06100 Strep_67kDa_ant: Stre 99.3 2.4E-10 5.2E-15 110.7 19.7 71 28-101 2-78 (500)
73 TIGR01373 soxB sarcosine oxida 99.3 4.4E-10 9.6E-15 112.5 22.5 40 26-65 28-69 (407)
74 PRK12266 glpD glycerol-3-phosp 99.3 3.1E-09 6.7E-14 108.6 26.9 43 25-67 3-45 (508)
75 PRK06834 hypothetical protein; 99.3 2.5E-09 5.4E-14 108.7 26.0 44 266-309 113-156 (488)
76 PRK11445 putative oxidoreducta 99.3 3E-09 6.4E-14 104.0 25.7 45 265-309 110-157 (351)
77 PRK06185 hypothetical protein; 99.3 7.3E-10 1.6E-14 111.0 21.8 37 26-62 4-40 (407)
78 PF05834 Lycopene_cycl: Lycope 99.3 1.1E-08 2.3E-13 100.8 29.5 202 261-501 94-298 (374)
79 PRK07045 putative monooxygenas 99.3 2.8E-09 6.2E-14 106.0 25.7 45 266-310 120-166 (388)
80 COG0665 DadA Glycine/D-amino a 99.2 6.6E-09 1.4E-13 103.5 27.6 40 26-65 2-41 (387)
81 PRK08244 hypothetical protein; 99.2 1.2E-09 2.6E-14 112.0 22.8 35 28-62 2-36 (493)
82 PRK06184 hypothetical protein; 99.2 3.5E-09 7.6E-14 108.8 26.1 45 266-310 122-169 (502)
83 PRK11101 glpA sn-glycerol-3-ph 99.2 2.8E-09 6E-14 109.9 25.4 39 27-65 5-43 (546)
84 PRK06617 2-octaprenyl-6-methox 99.2 3.4E-09 7.3E-14 104.7 25.0 50 260-310 110-161 (374)
85 PLN02463 lycopene beta cyclase 99.2 7.9E-10 1.7E-14 110.1 20.4 42 266-308 127-168 (447)
86 PF13738 Pyr_redox_3: Pyridine 99.2 6.8E-11 1.5E-15 106.3 10.7 41 267-307 96-136 (203)
87 PRK01747 mnmC bifunctional tRN 99.2 2.5E-10 5.4E-15 120.9 16.0 53 257-309 411-463 (662)
88 TIGR03329 Phn_aa_oxid putative 99.2 1.9E-10 4.2E-15 116.5 14.5 51 257-309 186-237 (460)
89 PLN02464 glycerol-3-phosphate 99.2 9.3E-09 2E-13 107.3 26.8 41 26-66 69-109 (627)
90 PRK06996 hypothetical protein; 99.2 9.7E-09 2.1E-13 102.3 26.0 47 260-306 121-171 (398)
91 PRK08132 FAD-dependent oxidore 99.2 5.3E-09 1.2E-13 108.6 25.0 38 26-63 21-58 (547)
92 COG0492 TrxB Thioredoxin reduc 99.2 4.7E-10 1E-14 105.3 15.1 43 451-494 261-303 (305)
93 PLN02172 flavin-containing mon 99.2 4E-10 8.7E-15 113.0 15.3 45 25-69 7-51 (461)
94 PRK13369 glycerol-3-phosphate 99.2 9.9E-09 2.1E-13 105.1 25.7 43 25-67 3-45 (502)
95 PRK07190 hypothetical protein; 99.2 9.1E-09 2E-13 104.5 24.9 45 266-310 122-166 (487)
96 PRK06183 mhpA 3-(3-hydroxyphen 99.2 6.2E-09 1.3E-13 107.8 24.2 39 26-64 8-46 (538)
97 TIGR01989 COQ6 Ubiquinone bios 99.2 9.7E-09 2.1E-13 103.5 24.9 52 259-310 122-184 (437)
98 PTZ00383 malate:quinone oxidor 99.2 9.4E-10 2E-14 110.7 17.1 42 268-310 232-274 (497)
99 COG0578 GlpA Glycerol-3-phosph 99.2 1.4E-08 3E-13 100.8 24.6 42 27-68 11-52 (532)
100 KOG2820 FAD-dependent oxidored 99.2 1.7E-10 3.7E-15 104.7 10.3 65 247-311 146-214 (399)
101 TIGR02023 BchP-ChlP geranylger 99.2 1.8E-08 3.9E-13 100.0 25.9 32 29-60 1-32 (388)
102 PLN00093 geranylgeranyl diphos 99.2 9E-09 2E-13 103.2 23.7 37 25-61 36-72 (450)
103 PRK06126 hypothetical protein; 99.2 6.8E-09 1.5E-13 107.9 23.6 37 26-62 5-41 (545)
104 PRK07236 hypothetical protein; 99.1 9.5E-10 2.1E-14 109.2 15.7 43 267-309 112-154 (386)
105 PRK08243 4-hydroxybenzoate 3-m 99.1 2.1E-08 4.6E-13 99.7 23.6 35 28-62 2-36 (392)
106 TIGR01790 carotene-cycl lycope 99.1 2E-08 4.4E-13 99.9 22.8 37 30-66 1-37 (388)
107 PLN02661 Putative thiazole syn 99.1 1.3E-09 2.8E-14 102.8 13.2 42 27-68 91-133 (357)
108 TIGR03364 HpnW_proposed FAD de 99.1 4.6E-10 9.9E-15 110.7 10.7 34 29-62 1-34 (365)
109 PRK05868 hypothetical protein; 99.1 9.4E-10 2E-14 108.3 12.2 47 264-310 115-161 (372)
110 PRK06452 sdhA succinate dehydr 99.1 6E-08 1.3E-12 100.5 25.8 41 27-67 4-44 (566)
111 COG2072 TrkA Predicted flavopr 99.1 2.3E-09 5E-14 107.1 14.7 55 25-79 5-60 (443)
112 PRK13339 malate:quinone oxidor 99.1 1.9E-09 4.2E-14 108.1 13.9 43 26-68 4-48 (497)
113 TIGR01812 sdhA_frdA_Gneg succi 99.1 4.7E-08 1E-12 101.9 24.4 38 30-67 1-38 (566)
114 TIGR01292 TRX_reduct thioredox 99.1 2.3E-09 5.1E-14 102.7 13.5 42 266-308 70-111 (300)
115 PRK07538 hypothetical protein; 99.1 7.6E-08 1.6E-12 96.5 24.8 35 29-63 1-35 (413)
116 PRK08163 salicylate hydroxylas 99.1 7.3E-10 1.6E-14 110.6 10.2 52 259-310 114-167 (396)
117 PRK06481 fumarate reductase fl 99.0 7.3E-09 1.6E-13 106.0 17.2 43 26-68 59-101 (506)
118 PRK06753 hypothetical protein; 99.0 2.1E-09 4.6E-14 106.4 12.7 44 267-310 110-153 (373)
119 PF13454 NAD_binding_9: FAD-NA 99.0 7.8E-09 1.7E-13 88.0 14.4 48 260-307 107-155 (156)
120 PRK05257 malate:quinone oxidor 99.0 3.6E-09 7.7E-14 107.0 14.3 44 26-69 3-48 (494)
121 PF00996 GDI: GDP dissociation 99.0 4E-09 8.8E-14 103.1 14.1 236 25-304 1-284 (438)
122 KOG1399 Flavin-containing mono 99.0 2.9E-09 6.4E-14 104.7 13.2 45 26-70 4-48 (448)
123 PLN02697 lycopene epsilon cycl 99.0 8.2E-08 1.8E-12 97.4 23.7 35 26-60 106-140 (529)
124 PF00890 FAD_binding_2: FAD bi 99.0 2.6E-09 5.6E-14 107.4 12.9 37 30-66 1-37 (417)
125 PRK09897 hypothetical protein; 99.0 9.1E-09 2E-13 104.2 16.0 42 28-69 1-45 (534)
126 PRK08274 tricarballylate dehyd 99.0 7.3E-09 1.6E-13 105.5 15.2 42 26-67 2-45 (466)
127 TIGR01320 mal_quin_oxido malat 99.0 1.7E-08 3.6E-13 102.2 17.2 41 29-69 1-43 (483)
128 TIGR01813 flavo_cyto_c flavocy 99.0 1.5E-08 3.2E-13 102.5 16.9 39 30-68 1-40 (439)
129 TIGR00275 flavoprotein, HI0933 99.0 5.1E-09 1.1E-13 103.8 12.8 37 32-68 1-37 (400)
130 TIGR03219 salicylate_mono sali 99.0 7.6E-09 1.6E-13 103.8 13.9 44 267-310 117-160 (414)
131 PRK08294 phenol 2-monooxygenas 99.0 2.3E-07 5E-12 97.2 24.5 60 25-103 29-91 (634)
132 PF00743 FMO-like: Flavin-bind 98.9 6.7E-09 1.4E-13 105.7 12.2 41 29-69 2-42 (531)
133 PRK15317 alkyl hydroperoxide r 98.9 1.7E-08 3.8E-13 103.7 14.2 43 266-308 279-321 (517)
134 PRK05192 tRNA uridine 5-carbox 98.9 1.9E-08 4.1E-13 102.0 14.1 40 27-66 3-43 (618)
135 TIGR03140 AhpF alkyl hydropero 98.9 1.7E-08 3.7E-13 103.6 13.6 43 266-308 280-322 (515)
136 PRK06175 L-aspartate oxidase; 98.9 5.1E-08 1.1E-12 97.7 16.0 40 26-66 2-41 (433)
137 PRK05976 dihydrolipoamide dehy 98.9 7.6E-08 1.7E-12 98.1 17.0 44 25-69 1-44 (472)
138 PLN02985 squalene monooxygenas 98.9 1.2E-06 2.6E-11 89.5 25.3 44 19-62 34-77 (514)
139 PRK12834 putative FAD-binding 98.9 7.2E-08 1.6E-12 99.9 16.5 43 26-68 2-46 (549)
140 PRK06475 salicylate hydroxylas 98.9 4.5E-08 9.9E-13 97.6 14.4 36 28-63 2-37 (400)
141 PRK07121 hypothetical protein; 98.8 8.3E-08 1.8E-12 98.3 16.5 43 26-68 18-60 (492)
142 PRK05249 soluble pyridine nucl 98.8 9.9E-08 2.1E-12 97.1 16.9 42 27-68 4-45 (461)
143 TIGR01789 lycopene_cycl lycope 98.8 1.8E-07 3.9E-12 91.7 18.0 37 30-66 1-39 (370)
144 TIGR03143 AhpF_homolog putativ 98.8 3.8E-08 8.3E-13 101.8 13.8 42 26-68 2-43 (555)
145 PRK06134 putative FAD-binding 98.8 2E-07 4.3E-12 97.1 19.0 45 25-69 9-53 (581)
146 PLN02927 antheraxanthin epoxid 98.8 2.7E-08 6E-13 102.6 12.4 41 269-309 208-248 (668)
147 PRK12845 3-ketosteroid-delta-1 98.8 1.3E-07 2.9E-12 97.4 17.5 42 26-68 14-55 (564)
148 PF01494 FAD_binding_3: FAD bi 98.8 6.4E-09 1.4E-13 102.2 7.6 35 29-63 2-36 (356)
149 PRK06467 dihydrolipoamide dehy 98.8 8.9E-08 1.9E-12 97.3 16.0 43 26-68 2-44 (471)
150 TIGR01424 gluta_reduc_2 glutat 98.8 1.2E-07 2.5E-12 95.9 16.5 41 28-69 2-42 (446)
151 PTZ00367 squalene epoxidase; P 98.8 5.1E-07 1.1E-11 92.7 21.0 35 27-61 32-66 (567)
152 PRK07573 sdhA succinate dehydr 98.8 1.2E-07 2.5E-12 99.4 16.0 39 27-65 34-72 (640)
153 PRK07818 dihydrolipoamide dehy 98.8 9.8E-08 2.1E-12 97.1 14.4 42 27-69 3-44 (466)
154 TIGR02360 pbenz_hydroxyl 4-hyd 98.8 1.3E-07 2.7E-12 93.9 14.8 36 27-62 1-36 (390)
155 PF12831 FAD_oxidored: FAD dep 98.8 9.3E-09 2E-13 103.0 6.6 40 30-69 1-40 (428)
156 PF01134 GIDA: Glucose inhibit 98.8 4E-08 8.6E-13 94.4 10.5 40 267-307 110-150 (392)
157 PRK12842 putative succinate de 98.8 2.4E-07 5.1E-12 96.5 16.5 44 26-69 7-50 (574)
158 PRK10262 thioredoxin reductase 98.7 1.2E-07 2.6E-12 91.6 12.8 43 25-68 3-45 (321)
159 PRK08071 L-aspartate oxidase; 98.7 2.3E-07 4.9E-12 95.0 15.4 39 28-67 3-41 (510)
160 PRK12839 hypothetical protein; 98.7 5.8E-07 1.3E-11 93.0 18.4 45 25-69 5-49 (572)
161 PRK07803 sdhA succinate dehydr 98.7 3.5E-07 7.5E-12 95.8 16.9 40 27-66 7-46 (626)
162 COG2509 Uncharacterized FAD-de 98.7 1.4E-06 3.1E-11 83.2 18.8 50 257-306 176-227 (486)
163 KOG2614 Kynurenine 3-monooxyge 98.7 3.5E-06 7.7E-11 79.7 21.0 36 28-63 2-37 (420)
164 PRK05945 sdhA succinate dehydr 98.7 3.5E-07 7.5E-12 95.2 16.1 39 28-66 3-43 (575)
165 PRK07804 L-aspartate oxidase; 98.7 4.9E-07 1.1E-11 93.3 17.0 41 26-66 14-54 (541)
166 TIGR00551 nadB L-aspartate oxi 98.7 4.3E-07 9.3E-12 92.8 16.4 39 28-67 2-40 (488)
167 PRK08401 L-aspartate oxidase; 98.7 7E-07 1.5E-11 90.6 16.8 34 28-61 1-34 (466)
168 PLN00128 Succinate dehydrogena 98.7 7.1E-07 1.5E-11 93.3 17.0 41 27-67 49-89 (635)
169 PRK06069 sdhA succinate dehydr 98.7 6.5E-07 1.4E-11 93.3 16.4 41 27-67 4-47 (577)
170 PRK12843 putative FAD-binding 98.6 1.2E-06 2.6E-11 91.1 17.7 44 26-69 14-57 (578)
171 PRK06263 sdhA succinate dehydr 98.6 9E-07 1.9E-11 91.6 16.6 40 27-67 6-46 (543)
172 TIGR02485 CobZ_N-term precorri 98.6 3.3E-07 7.2E-12 92.3 12.9 35 33-67 1-37 (432)
173 PRK09231 fumarate reductase fl 98.6 9.2E-07 2E-11 92.0 16.3 41 27-67 3-45 (582)
174 PLN02815 L-aspartate oxidase 98.6 9.3E-07 2E-11 91.6 16.2 41 26-67 27-67 (594)
175 KOG2844 Dimethylglycine dehydr 98.6 2.9E-07 6.3E-12 91.2 11.6 63 246-309 172-243 (856)
176 PRK07395 L-aspartate oxidase; 98.6 6.2E-07 1.3E-11 92.4 14.7 41 26-67 7-47 (553)
177 PF04820 Trp_halogenase: Trypt 98.6 4.5E-07 9.8E-12 91.1 13.4 56 30-103 1-59 (454)
178 PRK06854 adenylylsulfate reduc 98.6 1.3E-06 2.8E-11 91.2 17.2 39 27-65 10-50 (608)
179 TIGR01176 fum_red_Fp fumarate 98.6 1.3E-06 2.9E-11 90.5 16.9 40 28-67 3-44 (580)
180 PTZ00139 Succinate dehydrogena 98.6 9.2E-07 2E-11 92.4 15.2 41 27-67 28-68 (617)
181 PRK08958 sdhA succinate dehydr 98.6 1.2E-06 2.6E-11 91.1 15.6 41 27-67 6-46 (588)
182 TIGR01811 sdhA_Bsu succinate d 98.6 1.5E-06 3.3E-11 90.6 16.2 35 31-65 1-35 (603)
183 PTZ00306 NADH-dependent fumara 98.6 1.8E-06 4E-11 96.7 17.8 43 26-68 407-449 (1167)
184 PRK07057 sdhA succinate dehydr 98.6 2.8E-06 6.2E-11 88.5 18.1 41 27-67 11-51 (591)
185 PRK08275 putative oxidoreducta 98.6 1.1E-06 2.3E-11 91.2 14.8 39 27-65 8-48 (554)
186 PF07156 Prenylcys_lyase: Pren 98.6 1.6E-06 3.4E-11 83.8 14.8 100 209-310 78-188 (368)
187 PRK12779 putative bifunctional 98.6 8.1E-08 1.8E-12 104.2 6.3 44 26-69 304-347 (944)
188 PRK09078 sdhA succinate dehydr 98.6 1.6E-06 3.4E-11 90.5 15.7 40 27-66 11-50 (598)
189 PRK08626 fumarate reductase fl 98.5 2.1E-06 4.6E-11 90.2 16.2 40 27-66 4-43 (657)
190 PRK07512 L-aspartate oxidase; 98.5 1.2E-06 2.6E-11 89.8 13.9 34 27-62 8-41 (513)
191 TIGR03315 Se_ygfK putative sel 98.5 1.2E-07 2.5E-12 102.1 6.2 44 26-69 535-578 (1012)
192 PLN02852 ferredoxin-NADP+ redu 98.5 1.5E-07 3.4E-12 94.2 6.6 45 25-69 23-69 (491)
193 PRK08205 sdhA succinate dehydr 98.5 3.5E-06 7.5E-11 87.9 16.6 39 26-65 3-41 (583)
194 PRK12831 putative oxidoreducta 98.5 2E-07 4.3E-12 94.3 6.6 44 25-68 137-180 (464)
195 PRK06116 glutathione reductase 98.5 1.4E-07 2.9E-12 95.7 5.0 43 26-69 2-44 (450)
196 KOG2404 Fumarate reductase, fl 98.5 3.8E-06 8.3E-11 76.2 13.5 40 30-69 11-50 (477)
197 PRK06115 dihydrolipoamide dehy 98.4 1.8E-07 3.9E-12 95.0 5.2 42 28-69 3-44 (466)
198 TIGR01350 lipoamide_DH dihydro 98.4 2.4E-07 5.2E-12 94.4 5.7 41 28-69 1-41 (461)
199 PRK07845 flavoprotein disulfid 98.4 6.1E-06 1.3E-10 83.9 15.8 40 29-69 2-41 (466)
200 TIGR01421 gluta_reduc_1 glutat 98.4 2.3E-07 5E-12 93.7 5.2 41 28-69 2-42 (450)
201 PRK09853 putative selenate red 98.4 3.3E-07 7.2E-12 98.2 6.4 44 26-69 537-580 (1019)
202 PRK07251 pyridine nucleotide-d 98.4 2.6E-07 5.7E-12 93.3 5.5 42 28-69 3-45 (438)
203 PRK06416 dihydrolipoamide dehy 98.4 3E-07 6.5E-12 93.6 5.5 42 27-69 3-44 (462)
204 PRK08010 pyridine nucleotide-d 98.4 3.7E-07 7.9E-12 92.3 5.7 42 28-69 3-45 (441)
205 COG4716 Myosin-crossreactive a 98.4 9.6E-07 2.1E-11 81.7 7.7 55 26-80 20-80 (587)
206 TIGR00136 gidA glucose-inhibit 98.4 7.2E-06 1.6E-10 83.4 14.6 39 29-67 1-39 (617)
207 PTZ00188 adrenodoxin reductase 98.4 6E-07 1.3E-11 88.6 6.5 44 26-69 37-81 (506)
208 PRK06370 mercuric reductase; V 98.4 4.2E-07 9.2E-12 92.5 5.6 44 25-69 2-45 (463)
209 KOG2415 Electron transfer flav 98.4 4.3E-07 9.2E-12 85.1 5.0 44 26-69 74-123 (621)
210 COG1148 HdrA Heterodisulfide r 98.4 4.3E-07 9.3E-12 86.8 4.7 44 26-69 122-165 (622)
211 PRK09077 L-aspartate oxidase; 98.3 1.7E-05 3.7E-10 82.0 16.9 41 26-67 6-46 (536)
212 PRK12775 putative trifunctiona 98.3 5.9E-07 1.3E-11 98.5 6.4 43 27-69 429-471 (1006)
213 TIGR02028 ChlP geranylgeranyl 98.3 5.2E-07 1.1E-11 89.6 5.2 37 29-65 1-37 (398)
214 PF06039 Mqo: Malate:quinone o 98.3 2.6E-05 5.6E-10 75.5 16.3 41 27-67 2-44 (488)
215 PRK12769 putative oxidoreducta 98.3 7E-07 1.5E-11 94.5 6.1 44 26-69 325-368 (654)
216 KOG2853 Possible oxidoreductas 98.3 9.2E-05 2E-09 68.1 18.5 38 26-63 84-125 (509)
217 TIGR01316 gltA glutamate synth 98.3 8.4E-07 1.8E-11 89.6 6.3 43 26-68 131-173 (449)
218 PRK06292 dihydrolipoamide dehy 98.3 6.1E-07 1.3E-11 91.3 5.3 41 27-68 2-42 (460)
219 PRK12778 putative bifunctional 98.3 1E-06 2.2E-11 94.9 6.8 43 26-68 429-471 (752)
220 PTZ00052 thioredoxin reductase 98.3 7.7E-07 1.7E-11 90.9 5.7 50 258-307 226-276 (499)
221 PTZ00058 glutathione reductase 98.3 8.6E-07 1.9E-11 91.1 5.6 43 26-69 46-88 (561)
222 COG0493 GltD NADPH-dependent g 98.3 9.7E-07 2.1E-11 87.6 5.8 44 26-69 121-164 (457)
223 PRK06327 dihydrolipoamide dehy 98.3 8.6E-07 1.9E-11 90.3 5.5 44 26-69 2-51 (475)
224 PRK14727 putative mercuric red 98.3 1.1E-06 2.4E-11 89.6 6.0 44 26-69 14-57 (479)
225 TIGR02053 MerA mercuric reduct 98.3 9.1E-07 2E-11 90.1 5.2 40 29-69 1-40 (463)
226 PRK12810 gltD glutamate syntha 98.3 1.4E-06 3E-11 88.7 6.3 44 26-69 141-184 (471)
227 PRK14694 putative mercuric red 98.3 1.1E-06 2.3E-11 89.5 5.6 42 27-69 5-46 (468)
228 PRK13748 putative mercuric red 98.2 1E-06 2.2E-11 92.0 5.3 42 27-69 97-138 (561)
229 PRK09564 coenzyme A disulfide 98.2 6.8E-06 1.5E-10 83.4 11.1 43 266-308 69-114 (444)
230 PRK12814 putative NADPH-depend 98.2 1.8E-06 4E-11 91.0 6.7 44 26-69 191-234 (652)
231 KOG1439 RAB proteins geranylge 98.2 3.4E-05 7.4E-10 72.5 14.2 45 26-70 2-46 (440)
232 PRK06567 putative bifunctional 98.2 1.4E-06 3.1E-11 92.3 5.7 41 26-66 381-421 (1028)
233 PRK11749 dihydropyrimidine deh 98.2 1.7E-06 3.7E-11 87.8 6.1 43 26-68 138-180 (457)
234 PRK12837 3-ketosteroid-delta-1 98.2 1.4E-06 3E-11 89.5 5.5 41 27-68 6-46 (513)
235 TIGR01318 gltD_gamma_fam gluta 98.2 1.9E-06 4.1E-11 87.3 6.2 44 26-69 139-182 (467)
236 PRK12809 putative oxidoreducta 98.2 1.8E-06 3.9E-11 91.0 6.2 43 27-69 309-351 (639)
237 PRK05335 tRNA (uracil-5-)-meth 98.2 1.7E-06 3.6E-11 84.2 5.4 37 28-64 2-38 (436)
238 TIGR03197 MnmC_Cterm tRNA U-34 98.2 3.8E-05 8.3E-10 76.2 15.2 54 257-310 138-191 (381)
239 KOG2665 Predicted FAD-dependen 98.2 9.8E-06 2.1E-10 73.4 9.2 45 25-69 45-91 (453)
240 PRK13800 putative oxidoreducta 98.2 4.5E-05 9.7E-10 83.7 16.3 37 26-62 11-47 (897)
241 COG1249 Lpd Pyruvate/2-oxoglut 98.2 2.3E-06 4.9E-11 85.0 5.7 44 26-69 2-45 (454)
242 KOG2960 Protein involved in th 98.2 5.6E-07 1.2E-11 76.4 1.2 66 28-103 76-143 (328)
243 KOG0399 Glutamate synthase [Am 98.2 2.1E-06 4.5E-11 89.6 5.5 44 26-69 1783-1826(2142)
244 PRK12844 3-ketosteroid-delta-1 98.2 2.2E-06 4.7E-11 88.8 5.7 42 27-68 5-46 (557)
245 PLN02507 glutathione reductase 98.2 2.1E-06 4.4E-11 87.8 5.4 44 26-69 23-75 (499)
246 PRK07846 mycothione reductase; 98.1 3.1E-05 6.7E-10 78.3 13.3 39 28-69 1-39 (451)
247 PRK12835 3-ketosteroid-delta-1 98.1 3.4E-06 7.4E-11 87.7 6.1 43 25-67 8-50 (584)
248 COG4529 Uncharacterized protei 98.1 4.5E-05 9.8E-10 74.2 12.9 41 28-68 1-44 (474)
249 PRK07843 3-ketosteroid-delta-1 98.1 3.3E-06 7.2E-11 87.5 5.6 43 26-68 5-47 (557)
250 TIGR01423 trypano_reduc trypan 98.1 3.4E-06 7.3E-11 85.7 5.5 43 27-69 2-53 (486)
251 TIGR01372 soxA sarcosine oxida 98.1 3.2E-06 7E-11 93.3 5.7 43 27-69 162-204 (985)
252 TIGR01317 GOGAT_sm_gam glutama 98.1 4.4E-06 9.6E-11 85.0 6.2 43 27-69 142-184 (485)
253 PLN02546 glutathione reductase 98.1 3.3E-06 7.3E-11 86.8 5.2 43 27-69 78-129 (558)
254 PRK13512 coenzyme A disulfide 98.1 3.3E-05 7.2E-10 77.9 12.2 43 266-308 71-116 (438)
255 KOG0042 Glycerol-3-phosphate d 98.1 4.9E-05 1.1E-09 74.1 12.5 42 26-67 65-106 (680)
256 TIGR02462 pyranose_ox pyranose 98.1 5.8E-06 1.3E-10 84.0 6.5 37 29-65 1-37 (544)
257 PRK08641 sdhA succinate dehydr 98.1 4.3E-06 9.2E-11 87.2 5.3 39 28-66 3-41 (589)
258 TIGR02352 thiamin_ThiO glycine 98.1 0.00097 2.1E-08 64.9 21.7 53 257-310 140-194 (337)
259 PRK12771 putative glutamate sy 98.1 7E-06 1.5E-10 85.6 6.9 43 26-68 135-177 (564)
260 PRK12770 putative glutamate sy 98.0 8.8E-06 1.9E-10 79.6 6.6 45 25-69 15-59 (352)
261 TIGR00137 gid_trmFO tRNA:m(5)U 98.0 5.1E-06 1.1E-10 81.4 4.8 36 30-65 2-37 (433)
262 COG3573 Predicted oxidoreducta 98.0 7.3E-06 1.6E-10 74.9 5.0 41 27-67 4-46 (552)
263 PF00732 GMC_oxred_N: GMC oxid 98.0 4.9E-06 1.1E-10 79.5 4.2 34 29-62 1-35 (296)
264 PF00070 Pyr_redox: Pyridine n 98.0 1.3E-05 2.9E-10 59.5 5.5 34 30-63 1-34 (80)
265 PTZ00153 lipoamide dehydrogena 98.0 9E-06 1.9E-10 84.9 6.2 42 28-69 116-158 (659)
266 KOG1298 Squalene monooxygenase 98.0 6.9E-06 1.5E-10 76.5 4.5 36 25-60 42-77 (509)
267 COG3075 GlpB Anaerobic glycero 98.0 7.4E-06 1.6E-10 74.8 4.5 34 27-60 1-34 (421)
268 PF07992 Pyr_redox_2: Pyridine 98.0 8.7E-06 1.9E-10 72.8 5.0 32 30-61 1-32 (201)
269 PRK09754 phenylpropionate diox 98.0 8.5E-05 1.8E-09 74.0 12.4 41 266-307 199-239 (396)
270 COG5044 MRS6 RAB proteins gera 97.9 0.00012 2.5E-09 68.2 11.7 44 27-70 5-48 (434)
271 PRK05329 anaerobic glycerol-3- 97.9 9.5E-06 2.1E-10 80.2 5.1 35 27-61 1-35 (422)
272 PRK04965 NADH:flavorubredoxin 97.9 0.00013 2.9E-09 72.2 13.2 42 266-307 196-237 (377)
273 COG1252 Ndh NADH dehydrogenase 97.9 0.00013 2.9E-09 70.8 12.4 36 27-62 2-39 (405)
274 PRK13984 putative oxidoreducta 97.9 1.5E-05 3.2E-10 84.0 6.3 43 26-68 281-323 (604)
275 TIGR01350 lipoamide_DH dihydro 97.9 0.00017 3.6E-09 73.6 13.5 42 266-307 224-267 (461)
276 PRK07846 mycothione reductase; 97.9 0.00012 2.7E-09 74.0 12.4 42 266-307 219-260 (451)
277 TIGR01438 TGR thioredoxin and 97.9 1.2E-05 2.6E-10 81.8 5.1 42 28-69 2-51 (484)
278 PRK06912 acoL dihydrolipoamide 97.9 1.2E-05 2.7E-10 81.6 5.2 40 29-69 1-40 (458)
279 PRK05249 soluble pyridine nucl 97.9 0.00015 3.2E-09 74.0 12.5 43 266-308 229-271 (461)
280 COG1249 Lpd Pyruvate/2-oxoglut 97.9 0.00015 3.2E-09 72.3 11.9 41 266-306 227-269 (454)
281 KOG1800 Ferredoxin/adrenodoxin 97.9 2.3E-05 4.9E-10 73.1 5.6 43 27-69 19-63 (468)
282 PRK02106 choline dehydrogenase 97.9 1.5E-05 3.3E-10 83.0 5.1 36 26-61 3-39 (560)
283 COG0445 GidA Flavin-dependent 97.9 0.00013 2.7E-09 71.8 10.8 44 27-70 3-46 (621)
284 PRK06416 dihydrolipoamide dehy 97.8 0.00021 4.5E-09 72.9 13.1 43 266-308 226-271 (462)
285 PRK08255 salicylyl-CoA 5-hydro 97.8 1.9E-05 4.2E-10 84.9 5.5 34 29-62 1-36 (765)
286 PLN02507 glutathione reductase 97.8 0.00023 4.9E-09 72.9 12.6 42 266-307 257-298 (499)
287 COG1053 SdhA Succinate dehydro 97.8 2.4E-05 5.2E-10 80.1 5.1 43 26-68 4-46 (562)
288 TIGR03452 mycothione_red mycot 97.8 0.00016 3.5E-09 73.2 11.0 42 266-307 222-263 (452)
289 PRK06116 glutathione reductase 97.8 0.00025 5.4E-09 72.0 12.4 42 266-307 221-263 (450)
290 TIGR01421 gluta_reduc_1 glutat 97.8 0.00029 6.2E-09 71.4 12.5 35 28-62 166-200 (450)
291 COG0029 NadB Aspartate oxidase 97.8 0.0006 1.3E-08 66.5 13.8 32 30-62 9-40 (518)
292 PRK07845 flavoprotein disulfid 97.8 0.00039 8.5E-09 70.8 13.3 42 266-307 231-272 (466)
293 PRK07251 pyridine nucleotide-d 97.8 0.00038 8.3E-09 70.4 13.1 35 28-62 157-191 (438)
294 TIGR01424 gluta_reduc_2 glutat 97.8 0.00032 6.9E-09 71.1 12.4 42 266-307 220-261 (446)
295 TIGR02061 aprA adenosine phosp 97.7 3.7E-05 8.1E-10 79.9 4.9 33 30-62 1-37 (614)
296 PRK14989 nitrite reductase sub 97.7 0.00023 5.1E-09 77.0 10.5 41 266-308 72-112 (847)
297 TIGR02053 MerA mercuric reduct 97.6 0.00069 1.5E-08 69.1 13.2 35 28-62 166-200 (463)
298 PRK07818 dihydrolipoamide dehy 97.6 0.00061 1.3E-08 69.5 12.5 34 28-61 172-205 (466)
299 PRK05976 dihydrolipoamide dehy 97.6 0.00062 1.3E-08 69.6 12.4 35 28-62 180-214 (472)
300 PRK06370 mercuric reductase; V 97.6 0.00082 1.8E-08 68.5 13.2 35 28-62 171-205 (463)
301 TIGR03377 glycerol3P_GlpA glyc 97.6 0.015 3.2E-07 60.2 22.5 45 265-309 140-190 (516)
302 PRK06327 dihydrolipoamide dehy 97.6 0.00078 1.7E-08 68.8 12.9 35 28-62 183-217 (475)
303 KOG2852 Possible oxidoreductas 97.6 2.7E-05 5.9E-10 69.8 1.9 44 25-68 7-56 (380)
304 TIGR02374 nitri_red_nirB nitri 97.6 0.0005 1.1E-08 74.4 11.9 41 266-306 195-235 (785)
305 PRK06115 dihydrolipoamide dehy 97.6 0.00085 1.8E-08 68.3 12.5 36 27-62 173-208 (466)
306 TIGR02374 nitri_red_nirB nitri 97.6 0.00031 6.8E-09 75.9 9.7 41 266-308 67-107 (785)
307 PRK06912 acoL dihydrolipoamide 97.5 0.001 2.2E-08 67.7 12.6 35 28-62 170-204 (458)
308 PF13434 K_oxygenase: L-lysine 97.5 0.00064 1.4E-08 65.7 10.6 35 28-62 2-37 (341)
309 TIGR03452 mycothione_red mycot 97.5 0.00011 2.3E-09 74.5 5.3 39 28-69 2-40 (452)
310 KOG1335 Dihydrolipoamide dehyd 97.5 0.00011 2.3E-09 68.8 4.6 44 27-70 38-81 (506)
311 TIGR03378 glycerol3P_GlpB glyc 97.5 0.0001 2.2E-09 72.1 4.7 51 258-308 267-321 (419)
312 PRK08010 pyridine nucleotide-d 97.5 0.0011 2.4E-08 67.1 12.4 41 266-307 212-252 (441)
313 COG2303 BetA Choline dehydroge 97.5 8.8E-05 1.9E-09 76.4 4.4 36 25-60 4-39 (542)
314 PTZ00052 thioredoxin reductase 97.5 0.0013 2.8E-08 67.4 12.4 32 28-59 182-213 (499)
315 PRK14727 putative mercuric red 97.5 0.0015 3.3E-08 66.7 12.8 42 266-308 241-282 (479)
316 PRK06467 dihydrolipoamide dehy 97.4 0.0013 2.9E-08 66.9 12.1 35 28-62 174-208 (471)
317 PRK14989 nitrite reductase sub 97.4 0.0013 2.8E-08 71.4 12.3 41 266-306 200-242 (847)
318 TIGR01423 trypano_reduc trypan 97.4 0.0016 3.5E-08 66.3 12.4 41 266-306 244-285 (486)
319 PRK09564 coenzyme A disulfide 97.4 0.002 4.4E-08 65.3 13.2 34 28-61 149-182 (444)
320 TIGR03385 CoA_CoA_reduc CoA-di 97.4 0.002 4.3E-08 65.0 12.9 35 28-62 137-171 (427)
321 TIGR01810 betA choline dehydro 97.4 0.00012 2.5E-09 76.0 4.0 32 30-61 1-33 (532)
322 TIGR01438 TGR thioredoxin and 97.4 0.0018 3.8E-08 66.2 12.0 42 266-307 233-277 (484)
323 PRK13748 putative mercuric red 97.4 0.0018 4E-08 67.8 12.3 41 266-307 323-363 (561)
324 PRK13512 coenzyme A disulfide 97.4 0.0018 3.9E-08 65.4 11.8 35 28-62 148-182 (438)
325 PRK14694 putative mercuric red 97.4 0.0028 6E-08 64.7 13.2 41 266-307 231-271 (468)
326 PLN02785 Protein HOTHEAD 97.3 0.00031 6.7E-09 73.0 5.3 35 26-61 53-87 (587)
327 PTZ00058 glutathione reductase 97.3 0.0031 6.8E-08 65.2 12.3 35 28-62 237-271 (561)
328 PRK09754 phenylpropionate diox 97.2 0.00035 7.6E-09 69.6 5.1 41 266-308 71-111 (396)
329 KOG2311 NAD/FAD-utilizing prot 97.2 0.0013 2.8E-08 63.5 8.4 43 26-68 26-68 (679)
330 PTZ00318 NADH dehydrogenase-li 97.2 0.00039 8.4E-09 69.9 5.3 37 26-62 8-44 (424)
331 KOG0404 Thioredoxin reductase 97.2 0.0041 8.9E-08 54.0 10.3 45 25-69 5-53 (322)
332 PLN02546 glutathione reductase 97.1 0.0049 1.1E-07 63.7 12.3 35 28-62 252-286 (558)
333 COG0446 HcaD Uncharacterized N 97.1 0.00059 1.3E-08 68.5 4.9 40 28-67 136-175 (415)
334 COG1206 Gid NAD(FAD)-utilizing 97.1 0.00051 1.1E-08 63.1 3.7 35 28-62 3-37 (439)
335 KOG0405 Pyridine nucleotide-di 97.0 0.00093 2E-08 61.9 4.8 45 26-70 18-62 (478)
336 TIGR03862 flavo_PP4765 unchara 97.0 0.021 4.6E-07 55.6 14.1 56 249-306 76-138 (376)
337 PTZ00318 NADH dehydrogenase-li 97.0 0.0069 1.5E-07 60.9 11.2 38 266-307 241-278 (424)
338 PRK04965 NADH:flavorubredoxin 96.9 0.0013 2.8E-08 65.2 5.1 40 266-308 71-110 (377)
339 KOG4716 Thioredoxin reductase 96.8 0.0012 2.7E-08 60.8 3.8 35 26-60 17-51 (503)
340 COG3634 AhpF Alkyl hydroperoxi 96.8 0.00087 1.9E-08 62.0 2.5 40 25-66 208-247 (520)
341 PF13434 K_oxygenase: L-lysine 96.7 0.02 4.4E-07 55.4 11.8 41 267-307 293-339 (341)
342 PF01210 NAD_Gly3P_dh_N: NAD-d 96.6 0.0023 5E-08 54.4 4.3 32 30-61 1-32 (157)
343 PF03721 UDPG_MGDP_dh_N: UDP-g 96.5 0.0028 6E-08 55.3 4.1 33 29-61 1-33 (185)
344 TIGR03169 Nterm_to_SelD pyridi 96.5 0.0025 5.5E-08 62.8 4.2 33 30-62 1-36 (364)
345 KOG3855 Monooxygenase involved 96.5 0.0038 8.2E-08 59.5 4.9 35 27-61 35-73 (481)
346 PF02737 3HCDH_N: 3-hydroxyacy 96.4 0.0048 1E-07 53.7 4.7 32 30-61 1-32 (180)
347 PRK02705 murD UDP-N-acetylmura 96.4 0.0036 7.9E-08 63.8 4.6 34 30-63 2-35 (459)
348 PRK01438 murD UDP-N-acetylmura 96.4 0.0044 9.6E-08 63.5 5.2 34 28-61 16-49 (480)
349 KOG1238 Glucose dehydrogenase/ 96.4 0.0045 9.7E-08 62.8 4.9 38 25-62 54-92 (623)
350 KOG3923 D-aspartate oxidase [A 96.1 0.0045 9.8E-08 56.3 3.3 34 27-60 2-42 (342)
351 PRK06129 3-hydroxyacyl-CoA deh 96.1 0.0076 1.7E-07 57.7 4.7 33 29-61 3-35 (308)
352 PF02558 ApbA: Ketopantoate re 96.0 0.01 2.2E-07 50.1 4.8 31 31-61 1-31 (151)
353 COG0686 Ald Alanine dehydrogen 95.9 0.0075 1.6E-07 55.3 3.6 55 13-70 156-218 (371)
354 COG3486 IucD Lysine/ornithine 95.9 0.12 2.7E-06 49.6 11.7 38 25-62 2-40 (436)
355 KOG4405 GDP dissociation inhib 95.8 0.0087 1.9E-07 56.8 3.8 48 26-73 6-53 (547)
356 PF01262 AlaDh_PNT_C: Alanine 95.8 0.014 3.1E-07 50.2 5.0 36 26-61 18-53 (168)
357 COG0569 TrkA K+ transport syst 95.8 0.012 2.7E-07 53.2 4.5 33 29-61 1-33 (225)
358 COG1004 Ugd Predicted UDP-gluc 95.8 0.011 2.5E-07 56.3 4.3 33 29-61 1-33 (414)
359 KOG1336 Monodehydroascorbate/f 95.7 0.096 2.1E-06 51.3 10.2 44 266-309 268-313 (478)
360 PRK07819 3-hydroxybutyryl-CoA 95.7 0.015 3.3E-07 54.8 4.8 33 29-61 6-38 (286)
361 PRK06249 2-dehydropantoate 2-r 95.6 0.019 4.1E-07 55.2 5.4 35 27-61 4-38 (313)
362 PRK08229 2-dehydropantoate 2-r 95.6 0.016 3.4E-07 56.5 4.9 33 28-60 2-34 (341)
363 PRK05708 2-dehydropantoate 2-r 95.6 0.017 3.8E-07 55.1 5.0 33 28-60 2-34 (305)
364 PRK06292 dihydrolipoamide dehy 95.6 0.019 4E-07 58.6 5.4 37 27-63 168-204 (460)
365 PF13738 Pyr_redox_3: Pyridine 95.6 0.017 3.7E-07 51.5 4.6 36 26-61 165-200 (203)
366 TIGR03169 Nterm_to_SelD pyridi 95.6 0.12 2.6E-06 50.8 11.0 38 266-307 204-241 (364)
367 PRK14106 murD UDP-N-acetylmura 95.5 0.019 4.1E-07 58.4 5.1 34 28-61 5-38 (450)
368 PRK08293 3-hydroxybutyryl-CoA 95.5 0.018 3.9E-07 54.5 4.6 33 29-61 4-36 (287)
369 PRK07066 3-hydroxybutyryl-CoA 95.4 0.023 5E-07 54.1 5.1 34 28-61 7-40 (321)
370 PRK07530 3-hydroxybutyryl-CoA 95.4 0.025 5.4E-07 53.7 5.3 34 28-61 4-37 (292)
371 PRK09260 3-hydroxybutyryl-CoA 95.3 0.02 4.4E-07 54.2 4.4 33 29-61 2-34 (288)
372 PRK04148 hypothetical protein; 95.3 0.021 4.6E-07 46.2 3.8 35 27-62 16-50 (134)
373 PRK14618 NAD(P)H-dependent gly 95.3 0.028 6.1E-07 54.4 5.3 35 27-61 3-37 (328)
374 PRK06522 2-dehydropantoate 2-r 95.2 0.026 5.6E-07 54.1 4.7 32 29-60 1-32 (304)
375 KOG3851 Sulfide:quinone oxidor 95.1 0.019 4.1E-07 52.8 3.4 37 25-61 36-74 (446)
376 KOG2755 Oxidoreductase [Genera 95.1 0.013 2.9E-07 52.3 2.2 33 30-62 1-35 (334)
377 PRK12921 2-dehydropantoate 2-r 95.1 0.028 6E-07 53.9 4.7 31 29-59 1-31 (305)
378 cd01080 NAD_bind_m-THF_DH_Cycl 95.1 0.038 8.2E-07 47.2 5.0 35 26-60 42-77 (168)
379 COG0771 MurD UDP-N-acetylmuram 95.1 0.027 5.8E-07 55.8 4.4 36 28-63 7-42 (448)
380 PLN02545 3-hydroxybutyryl-CoA 95.0 0.033 7.1E-07 53.0 4.9 35 27-61 3-37 (295)
381 TIGR01470 cysG_Nterm siroheme 95.0 0.04 8.7E-07 49.0 5.0 34 28-61 9-42 (205)
382 PRK06130 3-hydroxybutyryl-CoA 95.0 0.035 7.7E-07 53.3 5.1 35 27-61 3-37 (311)
383 TIGR03140 AhpF alkyl hydropero 95.0 0.033 7.2E-07 57.5 5.2 35 27-61 351-385 (515)
384 cd05292 LDH_2 A subgroup of L- 95.0 0.035 7.7E-07 53.0 4.9 33 29-61 1-35 (308)
385 PRK11064 wecC UDP-N-acetyl-D-m 94.9 0.034 7.3E-07 55.5 4.7 33 29-61 4-36 (415)
386 TIGR01763 MalateDH_bact malate 94.8 0.045 9.8E-07 52.1 5.2 33 29-61 2-35 (305)
387 PTZ00153 lipoamide dehydrogena 94.8 0.04 8.7E-07 58.1 5.2 36 28-63 312-347 (659)
388 PRK06035 3-hydroxyacyl-CoA deh 94.8 0.036 7.8E-07 52.6 4.4 33 29-61 4-36 (291)
389 PRK14619 NAD(P)H-dependent gly 94.8 0.05 1.1E-06 52.1 5.3 35 27-61 3-37 (308)
390 PRK05808 3-hydroxybutyryl-CoA 94.7 0.038 8.3E-07 52.2 4.4 33 29-61 4-36 (282)
391 PRK15317 alkyl hydroperoxide r 94.6 0.047 1E-06 56.5 5.2 35 27-61 350-384 (517)
392 PRK10262 thioredoxin reductase 94.6 0.052 1.1E-06 52.4 5.2 34 28-61 146-179 (321)
393 PRK07531 bifunctional 3-hydrox 94.6 0.047 1E-06 55.9 5.0 35 27-61 3-37 (495)
394 TIGR03143 AhpF_homolog putativ 94.6 0.049 1.1E-06 56.8 5.1 37 27-63 142-178 (555)
395 PF13241 NAD_binding_7: Putati 94.6 0.043 9.2E-07 42.8 3.6 34 27-60 6-39 (103)
396 TIGR03026 NDP-sugDHase nucleot 94.5 0.039 8.5E-07 55.2 4.3 34 29-62 1-34 (411)
397 PF01488 Shikimate_DH: Shikima 94.5 0.078 1.7E-06 43.7 5.3 34 27-60 11-45 (135)
398 TIGR01316 gltA glutamate synth 94.5 0.056 1.2E-06 54.8 5.4 35 27-61 271-305 (449)
399 PRK04690 murD UDP-N-acetylmura 94.5 0.047 1E-06 55.6 4.8 34 28-61 8-41 (468)
400 TIGR01372 soxA sarcosine oxida 94.4 0.26 5.6E-06 55.2 10.7 34 27-60 316-350 (985)
401 PRK00094 gpsA NAD(P)H-dependen 94.3 0.06 1.3E-06 52.1 5.0 33 29-61 2-34 (325)
402 TIGR00518 alaDH alanine dehydr 94.3 0.065 1.4E-06 52.5 5.0 34 27-60 166-199 (370)
403 PRK12831 putative oxidoreducta 94.3 0.067 1.4E-06 54.4 5.3 35 27-61 280-314 (464)
404 PRK06718 precorrin-2 dehydroge 94.3 0.078 1.7E-06 47.0 5.0 34 27-60 9-42 (202)
405 PLN02572 UDP-sulfoquinovose sy 94.2 0.093 2E-06 53.0 6.2 58 3-60 18-80 (442)
406 PRK01710 murD UDP-N-acetylmura 94.2 0.059 1.3E-06 54.8 4.8 34 28-61 14-47 (458)
407 PF03446 NAD_binding_2: NAD bi 94.2 0.071 1.5E-06 45.6 4.6 34 28-61 1-34 (163)
408 PRK14620 NAD(P)H-dependent gly 94.2 0.065 1.4E-06 51.8 4.8 32 29-60 1-32 (326)
409 PRK06719 precorrin-2 dehydroge 94.2 0.086 1.9E-06 44.6 4.9 32 27-58 12-43 (157)
410 KOG2304 3-hydroxyacyl-CoA dehy 94.2 0.054 1.2E-06 47.3 3.6 38 25-62 8-45 (298)
411 PRK03369 murD UDP-N-acetylmura 94.1 0.064 1.4E-06 54.9 4.8 34 27-60 11-44 (488)
412 PRK04308 murD UDP-N-acetylmura 94.1 0.078 1.7E-06 53.8 5.3 35 28-62 5-39 (445)
413 TIGR01292 TRX_reduct thioredox 94.0 0.08 1.7E-06 50.4 5.1 35 27-61 140-174 (300)
414 PLN02353 probable UDP-glucose 94.0 0.068 1.5E-06 54.0 4.6 34 28-61 1-36 (473)
415 TIGR02354 thiF_fam2 thiamine b 93.9 0.09 1.9E-06 46.5 4.7 34 27-60 20-54 (200)
416 PRK09424 pntA NAD(P) transhydr 93.9 0.087 1.9E-06 53.4 5.1 36 26-61 163-198 (509)
417 PRK12770 putative glutamate sy 93.9 0.087 1.9E-06 51.6 5.0 33 28-60 172-205 (352)
418 PRK15057 UDP-glucose 6-dehydro 93.8 0.08 1.7E-06 52.2 4.6 32 29-61 1-32 (388)
419 PRK00421 murC UDP-N-acetylmura 93.8 0.077 1.7E-06 54.1 4.6 36 27-62 6-42 (461)
420 PRK09897 hypothetical protein; 93.7 3.7 8.1E-05 42.4 16.6 53 258-311 395-449 (534)
421 COG1748 LYS9 Saccharopine dehy 93.7 0.091 2E-06 51.0 4.7 33 28-60 1-34 (389)
422 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.7 0.078 1.7E-06 54.2 4.4 34 28-61 5-38 (503)
423 PRK07417 arogenate dehydrogena 93.7 0.089 1.9E-06 49.5 4.5 33 29-61 1-33 (279)
424 PRK02472 murD UDP-N-acetylmura 93.6 0.094 2E-06 53.3 4.9 34 28-61 5-38 (447)
425 PRK01368 murD UDP-N-acetylmura 93.6 0.094 2E-06 53.1 4.8 32 28-60 6-37 (454)
426 PF00056 Ldh_1_N: lactate/mala 93.6 0.14 3E-06 42.5 5.1 33 29-61 1-36 (141)
427 COG1251 NirB NAD(P)H-nitrite r 93.5 0.28 6.1E-06 50.9 7.8 41 266-306 200-240 (793)
428 COG1893 ApbA Ketopantoate redu 93.5 0.087 1.9E-06 50.1 4.1 33 29-61 1-33 (307)
429 PRK08268 3-hydroxy-acyl-CoA de 93.4 0.11 2.3E-06 53.4 4.8 35 28-62 7-41 (507)
430 cd05191 NAD_bind_amino_acid_DH 93.4 0.21 4.5E-06 37.4 5.3 33 27-59 22-55 (86)
431 PRK05675 sdhA succinate dehydr 93.4 1.3 2.8E-05 46.5 12.9 49 259-307 131-187 (570)
432 cd01075 NAD_bind_Leu_Phe_Val_D 93.3 0.14 3.1E-06 45.3 5.0 35 27-61 27-61 (200)
433 TIGR01915 npdG NADPH-dependent 93.2 0.13 2.8E-06 46.5 4.7 32 29-60 1-33 (219)
434 PRK06223 malate dehydrogenase; 93.2 0.14 3.1E-06 49.0 5.1 34 29-62 3-37 (307)
435 PF00899 ThiF: ThiF family; I 93.2 0.14 3E-06 42.2 4.4 33 28-60 2-35 (135)
436 PRK03803 murD UDP-N-acetylmura 93.1 0.13 2.9E-06 52.2 5.0 37 25-61 3-39 (448)
437 PTZ00082 L-lactate dehydrogena 93.0 0.18 3.9E-06 48.3 5.6 36 27-62 5-41 (321)
438 cd05293 LDH_1 A subgroup of L- 93.0 0.16 3.6E-06 48.4 5.3 35 27-61 2-38 (312)
439 PRK00141 murD UDP-N-acetylmura 92.9 0.14 3E-06 52.3 4.9 33 28-60 15-47 (473)
440 PRK02006 murD UDP-N-acetylmura 92.9 0.13 2.9E-06 52.9 4.8 33 29-61 8-40 (498)
441 PRK08306 dipicolinate synthase 92.9 0.17 3.7E-06 48.0 5.1 35 27-61 151-185 (296)
442 PRK11749 dihydropyrimidine deh 92.7 0.16 3.5E-06 51.7 5.1 34 27-60 272-306 (457)
443 COG1252 Ndh NADH dehydrogenase 92.7 0.089 1.9E-06 51.5 3.0 39 266-308 222-261 (405)
444 COG1250 FadB 3-hydroxyacyl-CoA 92.7 0.14 3.1E-06 48.1 4.1 33 28-60 3-35 (307)
445 PRK00066 ldh L-lactate dehydro 92.6 0.21 4.6E-06 47.7 5.4 36 26-61 4-41 (315)
446 PRK11730 fadB multifunctional 92.6 0.13 2.8E-06 55.2 4.3 35 28-62 313-347 (715)
447 cd00401 AdoHcyase S-adenosyl-L 92.5 0.19 4.2E-06 49.6 5.1 35 27-61 201-235 (413)
448 PRK12778 putative bifunctional 92.5 0.18 3.9E-06 54.8 5.3 35 27-61 569-604 (752)
449 PRK12549 shikimate 5-dehydroge 92.5 0.2 4.3E-06 47.2 4.9 35 27-61 126-161 (284)
450 cd05311 NAD_bind_2_malic_enz N 92.4 0.21 4.5E-06 45.3 4.8 34 27-60 24-60 (226)
451 TIGR00561 pntA NAD(P) transhyd 92.4 0.2 4.3E-06 50.8 5.1 36 26-61 162-197 (511)
452 cd05291 HicDH_like L-2-hydroxy 92.4 0.19 4.2E-06 47.9 4.9 32 30-61 2-35 (306)
453 TIGR02437 FadB fatty oxidation 92.3 0.16 3.5E-06 54.4 4.6 35 27-61 312-346 (714)
454 PRK15116 sulfur acceptor prote 92.3 0.21 4.6E-06 46.1 4.8 34 27-60 29-63 (268)
455 PRK11559 garR tartronate semia 92.3 0.2 4.3E-06 47.7 4.8 33 29-61 3-35 (296)
456 TIGR02853 spore_dpaA dipicolin 92.2 0.21 4.5E-06 47.1 4.7 35 27-61 150-184 (287)
457 COG3634 AhpF Alkyl hydroperoxi 92.2 0.13 2.8E-06 48.2 3.2 33 27-59 353-385 (520)
458 PF02254 TrkA_N: TrkA-N domain 92.1 0.27 5.9E-06 39.1 4.7 32 31-62 1-32 (116)
459 PRK03815 murD UDP-N-acetylmura 92.1 0.18 3.8E-06 50.2 4.3 31 29-60 1-31 (401)
460 PRK00683 murD UDP-N-acetylmura 92.0 0.19 4.1E-06 50.5 4.5 33 29-61 4-36 (418)
461 PRK11199 tyrA bifunctional cho 91.9 0.23 5E-06 48.8 4.8 35 26-60 96-131 (374)
462 TIGR01505 tartro_sem_red 2-hyd 91.9 0.18 3.9E-06 47.9 3.9 32 30-61 1-32 (291)
463 PRK01390 murD UDP-N-acetylmura 91.9 0.2 4.4E-06 51.0 4.6 32 29-60 10-41 (460)
464 TIGR02441 fa_ox_alpha_mit fatt 91.7 0.19 4E-06 54.1 4.2 34 28-61 335-368 (737)
465 KOG1335 Dihydrolipoamide dehyd 91.6 0.11 2.3E-06 49.4 2.0 40 26-65 209-248 (506)
466 PRK14573 bifunctional D-alanyl 91.6 0.23 4.9E-06 54.5 4.8 34 28-61 4-38 (809)
467 cd01078 NAD_bind_H4MPT_DH NADP 91.5 0.34 7.3E-06 42.8 5.0 34 27-60 27-61 (194)
468 cd01339 LDH-like_MDH L-lactate 91.4 0.24 5.2E-06 47.2 4.3 31 31-61 1-32 (300)
469 PRK15461 NADH-dependent gamma- 91.3 0.27 5.8E-06 46.7 4.5 33 29-61 2-34 (296)
470 PTZ00117 malate dehydrogenase; 91.3 0.33 7.2E-06 46.6 5.2 35 27-61 4-39 (319)
471 PLN02172 flavin-containing mon 91.3 0.24 5.2E-06 50.2 4.4 34 27-60 203-236 (461)
472 PRK03806 murD UDP-N-acetylmura 91.3 0.28 6E-06 49.7 4.9 34 28-61 6-39 (438)
473 TIGR02440 FadJ fatty oxidation 91.2 0.27 5.8E-06 52.7 4.8 35 27-61 303-338 (699)
474 PRK08644 thiamine biosynthesis 91.2 0.35 7.5E-06 43.3 4.8 33 28-60 28-61 (212)
475 TIGR00872 gnd_rel 6-phosphoglu 91.1 0.31 6.7E-06 46.4 4.7 33 29-61 1-33 (298)
476 cd01487 E1_ThiF_like E1_ThiF_l 91.1 0.35 7.7E-06 41.7 4.6 31 30-60 1-32 (174)
477 PRK09496 trkA potassium transp 91.0 0.27 5.8E-06 50.1 4.5 34 29-62 1-34 (453)
478 TIGR00507 aroE shikimate 5-deh 91.0 0.36 7.7E-06 45.2 5.0 34 27-60 116-149 (270)
479 PRK12475 thiamine/molybdopteri 91.0 0.34 7.3E-06 46.8 4.8 33 28-60 24-57 (338)
480 PRK12779 putative bifunctional 91.0 0.32 6.8E-06 53.9 5.2 35 27-61 446-480 (944)
481 PF13478 XdhC_C: XdhC Rossmann 91.0 0.26 5.7E-06 40.4 3.5 31 31-61 1-31 (136)
482 PTZ00142 6-phosphogluconate de 90.9 0.28 6.1E-06 49.5 4.4 34 29-62 2-35 (470)
483 cd01065 NAD_bind_Shikimate_DH 90.9 0.43 9.3E-06 40.3 5.0 35 27-61 18-53 (155)
484 PRK11154 fadJ multifunctional 90.9 0.27 6E-06 52.7 4.5 34 28-61 309-343 (708)
485 PLN02256 arogenate dehydrogena 90.9 0.41 8.9E-06 45.5 5.2 36 26-61 34-69 (304)
486 PRK07688 thiamine/molybdopteri 90.9 0.36 7.8E-06 46.7 4.9 34 27-60 23-57 (339)
487 PF00070 Pyr_redox: Pyridine n 90.8 0.45 9.7E-06 34.9 4.4 34 260-293 46-80 (80)
488 COG2085 Predicted dinucleotide 90.8 0.34 7.3E-06 42.5 4.2 31 28-58 1-31 (211)
489 TIGR01087 murD UDP-N-acetylmur 90.8 0.28 6.1E-06 49.6 4.3 32 30-61 1-32 (433)
490 COG2084 MmsB 3-hydroxyisobutyr 90.7 0.35 7.5E-06 45.0 4.4 34 29-62 1-34 (286)
491 TIGR00936 ahcY adenosylhomocys 90.6 0.41 8.9E-06 47.1 5.0 35 27-61 194-228 (406)
492 PF10727 Rossmann-like: Rossma 90.6 0.2 4.2E-06 40.6 2.3 35 25-59 7-41 (127)
493 PRK06849 hypothetical protein; 90.5 0.41 8.9E-06 47.6 5.2 37 26-62 2-39 (389)
494 TIGR02964 xanthine_xdhC xanthi 90.5 0.47 1E-05 43.5 5.1 37 26-62 98-134 (246)
495 cd05290 LDH_3 A subgroup of L- 90.5 0.38 8.3E-06 45.7 4.6 32 30-61 1-34 (307)
496 PRK05690 molybdopterin biosynt 90.5 0.42 9.2E-06 43.9 4.8 34 27-60 31-65 (245)
497 COG0287 TyrA Prephenate dehydr 90.4 0.47 1E-05 44.3 5.1 36 27-62 2-37 (279)
498 PRK12810 gltD glutamate syntha 90.3 0.42 9.1E-06 48.8 5.1 38 453-492 428-465 (471)
499 TIGR02355 moeB molybdopterin s 90.3 0.44 9.5E-06 43.6 4.7 33 28-60 24-57 (240)
500 PRK12548 shikimate 5-dehydroge 90.2 0.5 1.1E-05 44.7 5.2 35 27-61 125-160 (289)
No 1
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=2e-56 Score=449.93 Aligned_cols=434 Identities=84% Similarity=1.365 Sum_probs=359.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcCCCeeeec
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS 108 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~ 108 (520)
.+|+|||||+|||+||+.|.++|++|+|||+++++|||++|....|+.+|+|++++++...++.+.+|++++|++..+..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~~~~~ 80 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNENPLAPLIGRLGLPLYRTS 80 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCCCchHHHHHHHhCCceEecc
Confidence 48999999999999999999999999999999999999999888899999999999864334568999999999877665
Q ss_pred CCCccccccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhcCccccccccccCCC
Q 010001 109 GDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRFFEHVSSSL 188 (520)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (520)
.+..+.+......+..+......++......+...+.++.............+.++.+++...+.+.+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~--------- 151 (435)
T PLN02268 81 GDNSVLYDHDLESYALFDMDGNQVPQELVTKVGETFERILEETEKVRDEHEEDMSLLQAISIVLERHPELR--------- 151 (435)
T ss_pred CCccccccccccccceecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCCcCHHHHHHHHhhhCcccc---------
Confidence 54444444433334445555666777766666666666666555544334456677777655443332211
Q ss_pred CcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCcccccccccCccccccCCccccccChHHHHHHHhccC
Q 010001 189 PGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGL 268 (520)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~l~~~L~~gv 268 (520)
..++.++++++++.++.++++.+++++++..+.....+.|+...+.+|++.++++|.+++
T Consensus 152 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~g~~~~~~~G~~~l~~~l~~~~ 211 (435)
T PLN02268 152 --------------------LEGLAHEVLQWYLCRMEGWFAADADTISLKSWDQEELLEGGHGLMVRGYDPVINTLAKGL 211 (435)
T ss_pred --------------------cchHHHHHHHHHHHHHHHHhCCChHhCchhhcCCccccCCCceeecCCHHHHHHHHhccC
Confidence 345778888888777888889999999887766655556667788999999999999999
Q ss_pred CeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCchHHHHHHhhcCCcceeEEEEEeCCCc
Q 010001 269 DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVF 348 (520)
Q Consensus 269 ~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~ 348 (520)
+|+++++|++|...++++.|++.+|+++.||+||+|+|+..++...+.+.|+||++..+.+.+++++...|+++.|++++
T Consensus 212 ~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~f 291 (435)
T PLN02268 212 DIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVF 291 (435)
T ss_pred ceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCC
Confidence 99999999999999999999999998899999999999999977667888999999999999999999999999999999
Q ss_pred ccCCccceeecCCCCceeEeeeccCCCCceEEEEEechhhhHHHhcCCHHHHHHHHHHHHHHHCCCCCCCcEEEeccCCC
Q 010001 349 WPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGT 428 (520)
Q Consensus 349 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~w~~ 428 (520)
|++..++|.+.+....+.++.+....++..+++++..+..+..+..++++++++.++++|++++|...+|+.+.+++|..
T Consensus 292 w~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~~~~p~~~~~~~W~~ 371 (435)
T PLN02268 292 WPNVEFLGVVAPTSYGCSYFLNLHKATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPDATEPVQYLVSRWGS 371 (435)
T ss_pred CCCCceeeccCCCCCCceEEEecccCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCCCCCccEEEecccCC
Confidence 99877778776655555555554444567788889888888899999999999999999999999877899999999999
Q ss_pred CCCCCccccCCCCCCChhHHHHhcCCCCcEEEeeccccCcCCccchHHHHHHHHHHHHHHHHH
Q 010001 429 DANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 491 (520)
Q Consensus 429 ~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~~l 491 (520)
++++.|+|++..++......+.+++|+++|+|||++++..++|+||||+.||.+||++|+..|
T Consensus 372 dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 372 DPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred CCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 999999999988898777888999999999999999998888999999999999999998765
No 2
>PLN03000 amine oxidase
Probab=100.00 E-value=5.7e-47 Score=388.80 Aligned_cols=429 Identities=34% Similarity=0.525 Sum_probs=318.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCC----CcccccccceecCCCCCCchHHHHHHcC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF----GFPVDLGASWLHGVCQENPLAPVISRLG 101 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~----g~~~d~G~~~~~~~~~~~~~~~l~~~lg 101 (520)
....+|+|||||++||+||+.|.+.|++|+|+|+++++||++.|.... |+.+|+|++++++. ..+.+..+++++|
T Consensus 182 ~~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~-~~npl~~L~~qlg 260 (881)
T PLN03000 182 SSKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGT-LGNPLGIIARQLG 260 (881)
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCC-CccHHHHHHHHcC
Confidence 356899999999999999999999999999999999999999998764 46799999999876 4556788899999
Q ss_pred CCeeeecCCCccccccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhh---cCCCCCcHHHHHHHHHhcCccc
Q 010001 102 LPLYRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVRE---EHDEDMSIQRAISIVFDRRPEL 178 (520)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 178 (520)
++.........+ +...+...+......+...+..++.....+.. ....+.++.+.+..+.+.
T Consensus 261 l~l~~~~~~~~l-----------y~~~Gk~v~~~~~~~ve~~fn~lLd~~~~lr~l~~~~~~D~SLg~aLe~~~~~---- 325 (881)
T PLN03000 261 SSLYKVRDKCPL-----------YRVDGKPVDPDVDLKVEVAFNQLLDKASKLRQLMGDVSMDVSLGAALETFRQV---- 325 (881)
T ss_pred CceeecCCCCeE-----------EEeCCcCCchhhhhhHHHHHHHHHHHHHHHHHHhcccCcCCcHHHHHHHHHHH----
Confidence 986543322221 12234444444333333334444433322221 122233433322110000
Q ss_pred cccccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCcccccccccCcc--ccccCCccccccC
Q 010001 179 RFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKE--ELLPGGHGLMVRG 256 (520)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~G 256 (520)
.... ...-...+..+.+..++...+.....++...+... +...+.+..+.+|
T Consensus 326 -----~g~~---------------------~t~e~~~Ll~w~lanLE~~~as~ls~LSl~~wdqd~~~e~~G~~~~v~GG 379 (881)
T PLN03000 326 -----SGND---------------------VATEEMGLFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCFLPGG 379 (881)
T ss_pred -----Hccc---------------------CCHHHHHHHHHHHHHHhcccccCHHHHHHHHhhhcccccCCCceEEeCCC
Confidence 0000 00001112223333334444444445554444321 2234456678899
Q ss_pred hHHHHHHHhccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCchHHHHHHhhcCCcc
Q 010001 257 YLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGI 336 (520)
Q Consensus 257 ~~~l~~~L~~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~ 336 (520)
++.++++|++.+.|+++++|++|++.+++|.|++.++ ++.||+||+|+|+.+++...+.|.|+||++..+++.+++++.
T Consensus 380 ~~~LieaLa~~L~I~Ln~~Vt~I~~~~dgV~V~~~~~-~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~ 458 (881)
T PLN03000 380 NGRLVQALAENVPILYEKTVQTIRYGSNGVKVIAGNQ-VYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGL 458 (881)
T ss_pred HHHHHHHHHhhCCcccCCcEEEEEECCCeEEEEECCc-EEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcc
Confidence 9999999999999999999999999999999987654 899999999999999986678899999999999999999999
Q ss_pred eeEEEEEeCCCcccCC-ccceeecCCCC---ceeEeeeccCCCCceEEEEEechhhhHHHhcCCHHHHHHHHHHHHHHHC
Q 010001 337 ENKIIMHFDKVFWPNV-EFLGVVSDTSY---GCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL 412 (520)
Q Consensus 337 ~~~v~l~~~~~~~~~~-~~~g~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~ 412 (520)
..||++.|+++||+.. .++|.+.++.. ....+.+..+..+..+|++++.++.+..+..++++++.+.++++|++++
T Consensus 459 l~KViL~Fd~~FW~~d~~~FG~l~~~~~~rg~~~~f~s~sp~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lrkif 538 (881)
T PLN03000 459 LNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFYSYAPVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILRGIY 538 (881)
T ss_pred eEEEEEEeCCccccCCCCceeEEecCCCCCceeEEEeCCCCCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHHHHh
Confidence 9999999999999865 56777654321 1233444444456779999999999999999999999999999999999
Q ss_pred CC----CCCCcEEEeccCCCCCCCCccccCCCCCCChhHHHHhcCCC--CcEEEeeccccCcCCccchHHHHHHHHHHHH
Q 010001 413 PD----ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV--DNLFFAGEATSMSYPGSVHGAFSTGLMAAED 486 (520)
Q Consensus 413 ~~----~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~--~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~ 486 (520)
+. .++|+.+.+++|..++++.|+|++..++.....++.+.+|+ ++|||||++++..++|||+||+.||.+||++
T Consensus 539 g~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~e 618 (881)
T PLN03000 539 EPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAAN 618 (881)
T ss_pred CccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHHHHHH
Confidence 62 35788999999999999999999999998888888999986 5999999999988889999999999999999
Q ss_pred HHHHHHHHhCC
Q 010001 487 CRMRVLERYGE 497 (520)
Q Consensus 487 i~~~l~~~~~~ 497 (520)
|++.+.....+
T Consensus 619 Il~~l~~~~~~ 629 (881)
T PLN03000 619 MAQSAKARGIR 629 (881)
T ss_pred HHHHhhhccCC
Confidence 99988876543
No 3
>PLN02529 lysine-specific histone demethylase 1
Probab=100.00 E-value=1.8e-46 Score=385.00 Aligned_cols=427 Identities=35% Similarity=0.548 Sum_probs=314.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCC--C--cccccccceecCCCCCCchHHHHHHcC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF--G--FPVDLGASWLHGVCQENPLAPVISRLG 101 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~--g--~~~d~G~~~~~~~~~~~~~~~l~~~lg 101 (520)
..++||+|||||++||+||..|+++|++|+|+|+++++||++.|.... | ..+|+|++|+++. ..+.+..+.+++|
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~-~~npl~~la~~lg 236 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGI-HANPLGVLARQLS 236 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeecccc-ccchHHHHHHHhC
Confidence 456899999999999999999999999999999999999999998764 3 4899999999976 3455888999999
Q ss_pred CCeeeecCCCccccccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhh---cCCCCCcHHHHHHHHHhcCccc
Q 010001 102 LPLYRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVRE---EHDEDMSIQRAISIVFDRRPEL 178 (520)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 178 (520)
++..+...... ++..++...+......+...+..++........ ....+.++.+++....+....
T Consensus 237 l~~~~~~~~~~-----------~~~~~G~~v~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~d~Sl~~~le~~~~~~~~- 304 (738)
T PLN02529 237 IPLHKVRDNCP-----------LYKPDGALVDKEIDSNIEFIFNKLLDKVTELRQIMGGFANDISLGSVLERLRQLYGV- 304 (738)
T ss_pred CCccccCCCce-----------EEeCCCcCcchhhhhhHHHHHHHHHHHHHHHHHhcccCccCCCHHHHHHHHHhhhcc-
Confidence 98654432221 122233333333332323233333333322211 122344555544322110000
Q ss_pred cccccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCcccccccccCcc--ccccCCccccccC
Q 010001 179 RFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKE--ELLPGGHGLMVRG 256 (520)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~G 256 (520)
........++.+....++...+...+.+++..|... +...+.+..+.+|
T Consensus 305 -----------------------------~~t~~e~~ll~~~~~~le~a~~~~~s~LSl~~~~~~~~~e~~G~~~~i~GG 355 (738)
T PLN02529 305 -----------------------------ARSTEERQLLDWHLANLEYANAGCLSDLSAAYWDQDDPYEMGGDHCFLAGG 355 (738)
T ss_pred -----------------------------CCCHHHHHHHHHHHHHhceecCCChHHhhhhHhhhccccccCCceEEECCc
Confidence 000112334444444445555566666777666543 2233456678999
Q ss_pred hHHHHHHHhccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCchHHHHHHhhcCCcc
Q 010001 257 YLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGI 336 (520)
Q Consensus 257 ~~~l~~~L~~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~ 336 (520)
++.++++|++++.|++|++|++|..++++|+|++. ++++.||+||+|+|+.+++...+.|.|+||+...+++.++++++
T Consensus 356 ~~~Li~aLA~~L~IrLnt~V~~I~~~~dGVtV~t~-~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~ 434 (738)
T PLN02529 356 NWRLINALCEGVPIFYGKTVDTIKYGNDGVEVIAG-SQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGL 434 (738)
T ss_pred HHHHHHHHHhcCCEEcCCceeEEEEcCCeEEEEEC-CEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCce
Confidence 99999999999999999999999999999988764 45899999999999999987667899999999999999999999
Q ss_pred eeEEEEEeCCCcccCC-ccceeecCCC---CceeEeeeccCCCCceEEEEEechhhhHHHhcCCHHHHHHHHHHHHHHHC
Q 010001 337 ENKIIMHFDKVFWPNV-EFLGVVSDTS---YGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL 412 (520)
Q Consensus 337 ~~~v~l~~~~~~~~~~-~~~g~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~ 412 (520)
..||++.|+++||++. .++|.+.... .....+.+....++..++++++.+..+..+..++++++.+.++++|++++
T Consensus 435 v~KV~L~F~~~FW~~~~~~fG~l~~~~~~~g~~~~~~~~~~~~ggpvLvafv~G~~A~~le~lsdeeii~~vl~~L~~if 514 (738)
T PLN02529 435 LNKVAMVFPSVFWGEELDTFGCLNESSNKRGEFFLFYGYHTVSGGPALVALVAGEAAQRFENTDPSTLLHRVLSVLRGIY 514 (738)
T ss_pred eEEEEEEeCCccccCCCCceEEEeccCCCCceEEEEecCCCCCCCCEEEEEECchhhHHHhcCCHHHHHHHHHHHHHHHh
Confidence 9999999999999763 4666654321 11222223333345578899999998999999999999999999999998
Q ss_pred CC----CCCCcEEEeccCCCCCCCCccccCCCCCCChhHHHHhcCCC-CcEEEeeccccCcCCccchHHHHHHHHHHHHH
Q 010001 413 PD----ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV-DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDC 487 (520)
Q Consensus 413 ~~----~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~-~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i 487 (520)
+. .++|..+.+++|..++++.|+|++..++.....+..+..|+ ++|+|||++++..++|+||||+.||.+||++|
T Consensus 515 gp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eI 594 (738)
T PLN02529 515 NPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQYPATMHGAFLSGLREASRI 594 (738)
T ss_pred CccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHH
Confidence 62 34788899999999999999999887766554456667774 89999999999989999999999999999999
Q ss_pred HHHHHHHh
Q 010001 488 RMRVLERY 495 (520)
Q Consensus 488 ~~~l~~~~ 495 (520)
+..+....
T Consensus 595 l~~l~~~~ 602 (738)
T PLN02529 595 LHVARSQQ 602 (738)
T ss_pred HHHHhhhh
Confidence 99876543
No 4
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.7e-47 Score=373.98 Aligned_cols=440 Identities=45% Similarity=0.686 Sum_probs=336.5
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCCcc-cccccceecCCCCCCchHHHHHHcCCC
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLP 103 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~-~d~G~~~~~~~~~~~~~~~l~~~lg~~ 103 (520)
..++++|||||||+|||+||+.|.+.|++|+|+|+.+|+|||++|+...+.. +|+|++++++.. .+.+..+.+++|++
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~-~npl~~l~~qlgl~ 90 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVY-NNPLALLSKQLGLE 90 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcC-ccHHHHHHHHhCcc
Confidence 3567899999999999999999999999999999999999999998877655 999999999874 45789999999999
Q ss_pred eeeecCCCccccccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhcCcccccccc
Q 010001 104 LYRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRFFEH 183 (520)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (520)
.........++...+......+................... +....... .....++.+.+..
T Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~----~~~~~~~~-~i~~~~~~~~~~~------------- 152 (501)
T KOG0029|consen 91 LYKVRDTCPLFNENGGESDKVFDDFVEQEFNRLLDDASNLE----QRLDNEII-GISDDSFGEALEA------------- 152 (501)
T ss_pred cceecccccccccCCcccccccccchhhhhHHHHHHHhhhh----hhhhhccc-ccccccHHHHHHh-------------
Confidence 88777666666555532222221111111111111111100 00000000 0001122111110
Q ss_pred ccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCcccccccccCccccccCC--ccccccChHHHH
Q 010001 184 VSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGG--HGLMVRGYLPVI 261 (520)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~G~~~l~ 261 (520)
......+.....+....+.......|.+..++..+.......+...+.....+..+ +..+.+|+.+++
T Consensus 153 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~~~v~ 222 (501)
T KOG0029|consen 153 ----------FLSASRLMKTLLELLLEGEADKVLQWHLVNLELTFIAHLENASARLWDQDELFGGGGIHLLMKGGYEPVV 222 (501)
T ss_pred ----------HHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHhhccHhHhhHHhhhhhhhcccccchhHhhCCccHHH
Confidence 00011111122222244466677777787787777777777777666655444333 578899999999
Q ss_pred HHHhccCCeecCceeEEEEEeCCe-EEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCchHHHHHHhhcCCcceeEE
Q 010001 262 NTLAKGLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKI 340 (520)
Q Consensus 262 ~~L~~gv~i~~~~~V~~I~~~~~~-v~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~v 340 (520)
..|+.|+.|+++..|.+|.+.++. +.+++.++..+.+|+||+++|+..++...+.|.|+||.+..+++.+++.+...++
T Consensus 223 ~~la~~l~I~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~~Kv 302 (501)
T KOG0029|consen 223 NSLAEGLDIHLNKRVRKIKYGDDGAVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLVNKV 302 (501)
T ss_pred hhcCCCcceeeceeeEEEEEecCCceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCceeEE
Confidence 999999999999999999998877 3455555556999999999999999877789999999999999999999999999
Q ss_pred EEEeCCCcc-cCCccceeecCCCCcee--EeeeccCCCCceEEEEEechhhhHHHhcCCHHHHHHHHHHHHHHHCC--CC
Q 010001 341 IMHFDKVFW-PNVEFLGVVSDTSYGCS--YFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DA 415 (520)
Q Consensus 341 ~l~~~~~~~-~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~~--~~ 415 (520)
.+.|+..+| ++..++|.+..+..... .+++..+..+...++.+..+.....+..++++++++.++..|+++++ ..
T Consensus 303 ~l~F~~~fW~~~~d~fg~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f~~~~~ 382 (501)
T KOG0029|consen 303 ILEFPRVFWDQDIDFFGIVPETSVLRGLFTFYDCKPVAGHPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVFGSEEV 382 (501)
T ss_pred EEEeccccCCCCcCeEEEccccccccchhhhhhcCccCCCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHhccCcC
Confidence 999999999 56677888776655555 55666666667788888888888899999999999999999999999 67
Q ss_pred CCCcEEEeccCCCCCCCCccccCCCCCCChhHHHHhcCCCCc-EEEeeccccCcCCccchHHHHHHHHHHHHHHHHHHH
Q 010001 416 SSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDN-LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 493 (520)
Q Consensus 416 ~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~-l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~~l~~ 493 (520)
.+|+++.+.+|..+++..|+|.+..++...+..+.++.|+.| +|+||+++...++++|+||+.||.++|..|++.+..
T Consensus 383 ~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~~ 461 (501)
T KOG0029|consen 383 PDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLIE 461 (501)
T ss_pred CCccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHHh
Confidence 889999999999999999999999888888888999999988 999999999999999999999999999999999884
No 5
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=100.00 E-value=2.1e-45 Score=378.19 Aligned_cols=430 Identities=33% Similarity=0.520 Sum_probs=314.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCCc----ccccccceecCCCCCCchHHHHHHcC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGF----PVDLGASWLHGVCQENPLAPVISRLG 101 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~----~~d~G~~~~~~~~~~~~~~~l~~~lg 101 (520)
....+|+|||||++||+||+.|+++|++|+|+|+++++||++.+....|. .+|+|++++++. ..+.+..+++++|
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~-~~npl~~l~~~lg 314 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGI-NGNPLGVLARQLG 314 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCC-CccHHHHHHHHcC
Confidence 45689999999999999999999999999999999999999999887653 689999999876 3456788999999
Q ss_pred CCeeeecCCCccccccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhhc-----CCCCCcHHHHHHHHHhcCc
Q 010001 102 LPLYRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREE-----HDEDMSIQRAISIVFDRRP 176 (520)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 176 (520)
++.........++ ...+..+...........+..++....++... ...+.++.+++...-...
T Consensus 315 l~~~~~~~~~~~~-----------~~dG~~~~~~~~~~v~~~f~~lL~~~~klr~~~~~~~~~~D~SLg~~le~~~~~~- 382 (808)
T PLN02328 315 LPLHKVRDICPLY-----------LPDGKAVDAEIDSKIEASFNKLLDRVCKLRQAMIEEVKSVDVNLGTALEAFRHVY- 382 (808)
T ss_pred CceEecCCCceEE-----------eCCCcCcchhhhhhHHHHHHHHHHHHHHHHHhhhhcccccCcCHHHHHHHHhhhh-
Confidence 9865443222221 12233333332222233344444433322211 112344444442210000
Q ss_pred cccccccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCcccccccccCcc--ccccCCccccc
Q 010001 177 ELRFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKE--ELLPGGHGLMV 254 (520)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~ 254 (520)
. .. .......++++.+..++...+.....+++..+... +...+.+..+.
T Consensus 383 --~--------~~-------------------~~~~e~~Ll~w~lanlE~~~gs~ls~LSl~~w~qd~~~e~~G~~~~v~ 433 (808)
T PLN02328 383 --K--------VA-------------------EDPQERMLLNWHLANLEYANASLMSNLSMAYWDQDDPYEMGGDHCFIP 433 (808)
T ss_pred --c--------cC-------------------CCHHHHHHHHHHHHHHhccchhhHHHHHhhhhhccccccCCCeEEEEC
Confidence 0 00 00001122233333333333344444444444321 11234467789
Q ss_pred cChHHHHHHHhccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCchHHHHHHhhcCC
Q 010001 255 RGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGV 334 (520)
Q Consensus 255 ~G~~~l~~~L~~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~l~~~~~~~~~~~~~ 334 (520)
+|++.++++|++.+.|++|++|++|...+++|.| +.+|+++.||+||+|+|+..++...+.|.|+||.+..+++.++++
T Consensus 434 GG~~~Li~aLa~~L~I~ln~~V~~I~~~~dgV~V-~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~y 512 (808)
T PLN02328 434 GGNDTFVRELAKDLPIFYERTVESIRYGVDGVIV-YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGY 512 (808)
T ss_pred CcHHHHHHHHHhhCCcccCCeeEEEEEcCCeEEE-EeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCC
Confidence 9999999999999999999999999999998877 456889999999999999999866678999999999999999999
Q ss_pred cceeEEEEEeCCCcccCC-ccceeecCCCCc---eeEeeeccCCCCceEEEEEechhhhHHHhcCCHHHHHHHHHHHHHH
Q 010001 335 GIENKIIMHFDKVFWPNV-EFLGVVSDTSYG---CSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKK 410 (520)
Q Consensus 335 ~~~~~v~l~~~~~~~~~~-~~~g~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~ 410 (520)
+...||++.|+.+||+.. ..+|.+..+... ...+.+....++..++++++.+..+..+..++++++++.+++.|++
T Consensus 513 G~~~KV~L~F~~~FW~~~~d~fG~l~~d~s~rG~~~lf~s~s~~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL~~Lr~ 592 (808)
T PLN02328 513 GLLNKVALLFPYNFWGGEIDTFGHLTEDPSMRGEFFLFYSYSSVSGGPLLIALVAGDAAVKFETLSPVESVKRVLQILRG 592 (808)
T ss_pred cceEEEEEEeCCccccCCCCceEEEeecCCCCceEEEEecCCCCCCCcEEEEEecChhhHHHhcCCHHHHHHHHHHHHHH
Confidence 999999999999999853 456766543211 1233343334566889999999999999999999999999999999
Q ss_pred HCCC----CCCCcEEEeccCCCCCCCCccccCCCCCCChhHHHHhcCCC--CcEEEeeccccCcCCccchHHHHHHHHHH
Q 010001 411 ILPD----ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV--DNLFFAGEATSMSYPGSVHGAFSTGLMAA 484 (520)
Q Consensus 411 ~~~~----~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~--~~l~~aG~~~~~~~~g~~egAi~SG~~aA 484 (520)
+++. .++|..+.+++|..+++++|+|++..++......+.+.+|+ ++|||||++++..++|||+||+.||.++|
T Consensus 593 ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA 672 (808)
T PLN02328 593 IFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREA 672 (808)
T ss_pred HhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHHHH
Confidence 9862 35788999999999999999999998888767778888885 59999999999888899999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 010001 485 EDCRMRVLERYGEL 498 (520)
Q Consensus 485 ~~i~~~l~~~~~~~ 498 (520)
++|+..++.+..+.
T Consensus 673 ~eIl~~~~~~~~~~ 686 (808)
T PLN02328 673 ANILRVARRRSLCI 686 (808)
T ss_pred HHHHHHHhhcccCC
Confidence 99999988875543
No 6
>PLN02676 polyamine oxidase
Probab=100.00 E-value=9.8e-45 Score=364.37 Aligned_cols=425 Identities=30% Similarity=0.489 Sum_probs=298.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCCCCceeeecCCCCcccccccceecCC--CCCCchHHHHHHcCC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGV--CQENPLAPVISRLGL 102 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~--~~~~~~~~l~~~lg~ 102 (520)
...+||+|||||++||+||++|+++|+ +|+|+|+++++||++.+....|+.+|.|++++++. ...+.+.++++++|+
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~g~ 103 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGANWVEGVGGPESNPIWELANKLKL 103 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeEEecCCEEEEcccCcccChHHHHHHhcCC
Confidence 457899999999999999999999998 69999999999999999888999999999999753 245678899999999
Q ss_pred CeeeecCCCccccccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhhc----CCCCCcHHHHHHHHHhcCccc
Q 010001 103 PLYRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREE----HDEDMSIQRAISIVFDRRPEL 178 (520)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 178 (520)
+......+.. ....+...+...+........+.+..+......+... ...+.+..+...
T Consensus 104 ~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~--------- 166 (487)
T PLN02676 104 RTFYSDFDNL--------SSNIYKQDGGLYPKKVVQKSMKVADASDEFGENLSISLSAKKAVDISILTAQR--------- 166 (487)
T ss_pred ceeecCcccc--------ceeEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCccHHHHHH---------
Confidence 8654321110 0111112233333322222222222222221111111 111222211100
Q ss_pred cccccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCcccccccccCccccc--cCC-cccc--
Q 010001 179 RFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELL--PGG-HGLM-- 253 (520)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g-~~~~-- 253 (520)
+.+.+ ...........+. ....++.++..+++..+.....+ .++ ...+
T Consensus 167 ------------------~~~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~S~~~~~~~~~~~~~g~~~~~~~~ 219 (487)
T PLN02676 167 ------------------LFGQV-------PKTPLEMVIDYYN--YDYEFAEPPRVTSLKNTEPNPTFVDFGEDEYFVAD 219 (487)
T ss_pred ------------------HHhhC-------CCCHHHHHHHHHh--ccceeccCccccchhhcCcccccccCCCceEEeec
Confidence 00000 0000011111111 01124566666666554321111 122 2233
Q ss_pred ccChHHHHHHHhcc-----------CCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCc
Q 010001 254 VRGYLPVINTLAKG-----------LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLP 322 (520)
Q Consensus 254 ~~G~~~l~~~L~~g-----------v~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~l~ 322 (520)
.+|+++++++|++. .+|++|++|++|..++++|.|++.+|+++.||+||+|+|+..+++..+.|.|+||
T Consensus 220 ~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP 299 (487)
T PLN02676 220 PRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLP 299 (487)
T ss_pred CCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCC
Confidence 57999999999863 4699999999999999999999999989999999999999999865689999999
Q ss_pred hHHHHHHhhcCCcceeEEEEEeCCCcccCCc-cceeecCCCC--ceeEeeec-cCCCCceEEEEEechhhhHHHhcCCHH
Q 010001 323 DWKEAAIDDLGVGIENKIIMHFDKVFWPNVE-FLGVVSDTSY--GCSYFLNL-HKATGHCVLVYMPAGQLARDIEKMSDE 398 (520)
Q Consensus 323 ~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~-~~g~~~~~~~--~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~e 398 (520)
....+.+..++++...|+++.|+++||++.. .......+.. ....+... ...++..+++++..++.+..+..++++
T Consensus 300 ~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~a~~~~~~s~e 379 (487)
T PLN02676 300 DWKIEAIYQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQHLENEYPGSNVLFVTVTDEESRRIEQQPDS 379 (487)
T ss_pred HHHHHHHHhCCceeeEEEEEEeCCCCCCCCCCceeeeeeccccccchhhhhcccCCCCCCEEEEEechHHHHHHHhCCHH
Confidence 9999999999999999999999999998632 1122111110 00111111 112344677788888888889999999
Q ss_pred HHHHHHHHHHHHHCC-CCCCCcEEEeccCCCCCCCCccccCCCCCCChhHHHHhcCCCCcEEEeeccccCcCCccchHHH
Q 010001 399 AAANFAFTQLKKILP-DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAF 477 (520)
Q Consensus 399 e~~~~~~~~L~~~~~-~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egAi 477 (520)
+..+.++++|+++++ ....|..+..++|..++++.|+|.+..+|......+.+++|+++|||||+.++..++|+||||+
T Consensus 380 ~~~~~vl~~L~~~~g~~~~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~g~~eGA~ 459 (487)
T PLN02676 380 ETKAEIMEVLRKMFGPNIPEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYNGYVHGAY 459 (487)
T ss_pred HHHHHHHHHHHHHhCCCCCCcceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEeccccccccccchHHHH
Confidence 999999999999996 4567889999999999999999998889988788889999999999999999988889999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010001 478 STGLMAAEDCRMRVLER 494 (520)
Q Consensus 478 ~SG~~aA~~i~~~l~~~ 494 (520)
.||.+||++|+..+...
T Consensus 460 ~SG~RaA~~I~~~l~~~ 476 (487)
T PLN02676 460 LAGIDTANDLLECIKKK 476 (487)
T ss_pred HHHHHHHHHHHHHhccC
Confidence 99999999999987653
No 7
>PLN02976 amine oxidase
Probab=100.00 E-value=2.2e-44 Score=377.82 Aligned_cols=450 Identities=36% Similarity=0.623 Sum_probs=331.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCC-CCcccccccceecCCCCC-------CchHHHH
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS-FGFPVDLGASWLHGVCQE-------NPLAPVI 97 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~~~-------~~~~~l~ 97 (520)
...+||+|||||++||++|+.|+++|++|+|||+++++||++.+... .|+++|.|++++++...+ +.+..++
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~la 770 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLIC 770 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHHH
Confidence 34689999999999999999999999999999999999999999764 588999999999875321 2344578
Q ss_pred HHcCCCeeeecCCCccccccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhh---cCCCCCcHHHHHHHHHhc
Q 010001 98 SRLGLPLYRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVRE---EHDEDMSIQRAISIVFDR 174 (520)
Q Consensus 98 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 174 (520)
+++|++.......... +....+..++......+...+..++........ ....+.++.+++...+..
T Consensus 771 ~qlGl~l~~~~~~~~~----------yd~~~G~~V~~e~~~~v~~~fn~lld~~~~~~~~~g~~a~d~SLgd~Le~~~~~ 840 (1713)
T PLN02976 771 AQLGLELTVLNSDCPL----------YDVVTGEKVPADLDEALEAEYNSLLDDMVLLVAQKGEHAMKMSLEDGLEYALKR 840 (1713)
T ss_pred HhcCCccccccCCCce----------eEccCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCccCCCHHHHHHHHHhh
Confidence 9999986443221111 123456677777777777777777765543211 123356787777654422
Q ss_pred Cccccc----------------cccccCCCCcchhHHHH-HHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCcccccc
Q 010001 175 RPELRF----------------FEHVSSSLPGISLQRKL-LDLLKLVLTCRLEGLAHKVLQWYLCRMEGWFAADAETISL 237 (520)
Q Consensus 175 ~~~~~~----------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (520)
...... .......+.+-...+.. .++ .....+.++.+++..++..++.++..+++
T Consensus 841 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~--------Ls~~er~lL~w~~~~lE~~~aa~L~eVSl 912 (1713)
T PLN02976 841 RRMPRPGVDIDETELGNAADDLYDSASTGVDGGHCEKESKEDV--------LSPLERRVMNWHFAHLEYGCAALLKEVSL 912 (1713)
T ss_pred hhccccccccchhhcccchhhhhhhhhhcccccchhhhhHHHh--------hCHHHHHHHHHHHHhhcccccCCHHHhhh
Confidence 111000 00000001110000000 000 11122333444444433344667777777
Q ss_pred cccCccc---cccCCccccccChHHHHHHHhccCCeecCceeEEEEEe----------CCeEEEEEcCCcEEEcCEEEEe
Q 010001 238 KSWDKEE---LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRH----------YIGVKVTVEGGKTFVADAVVVA 304 (520)
Q Consensus 238 ~~~~~~~---~~~~g~~~~~~G~~~l~~~L~~gv~i~~~~~V~~I~~~----------~~~v~V~~~~g~~~~ad~VI~a 304 (520)
..|.... .+.|....+.+|++.|+++|++++.|++|++|++|.+. +++|.|.+.+|+++.||+||+|
T Consensus 913 ~~~~qd~~y~~fgG~~~rIkGGYqqLIeALAe~L~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVT 992 (1713)
T PLN02976 913 PYWNQDDVYGGFGGAHCMIKGGYSNVVESLAEGLDIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLIT 992 (1713)
T ss_pred hhhhcccccccCCCceEEeCCCHHHHHHHHHhhCCeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEe
Confidence 7666322 23445667899999999999999999999999999984 3568999999999999999999
Q ss_pred cChhhhhcCcccccCCCchHHHHHHhhcCCcceeEEEEEeCCCcccCC-ccceeecCC---CCceeEeeeccCCCCceEE
Q 010001 305 VPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV-EFLGVVSDT---SYGCSYFLNLHKATGHCVL 380 (520)
Q Consensus 305 ~p~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~-~~~g~~~~~---~~~~~~~~~~~~~~~~~~l 380 (520)
+|+..|+...+.|.|+||.+...++..++++...|+++.|+.+||+.. .++|....+ ...+..+++...+.+..+|
T Consensus 993 VPLGVLKag~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~~~~wnlr~psG~pVL 1072 (1713)
T PLN02976 993 VPLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCFMFWNVKKTVGAPVL 1072 (1713)
T ss_pred CCHHHhhhcccccCCcccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCCCCceEEEeccCCCCCCCCEE
Confidence 999999765578999999999999999999999999999999999874 556654332 1112233333334566789
Q ss_pred EEEechhhhHHHhcCCHHHHHHHHHHHHHHHCCC--CCCCcEEEeccCCCCCCCCccccCCCCCCChhHHHHhcCCCCc-
Q 010001 381 VYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD--ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDN- 457 (520)
Q Consensus 381 ~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~~~--~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~- 457 (520)
++++.|..+..+..++++++++.+++.|+++|+. .+.|..+.+++|..+|++.|+|.+..+|.....+..+..|++|
T Consensus 1073 Vafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAePVggR 1152 (1713)
T PLN02976 1073 IALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVENC 1152 (1713)
T ss_pred EEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhCCCCCc
Confidence 9999998888899999999999999999999985 3678999999999999999999988899877778889999976
Q ss_pred EEEeeccccCcCCccchHHHHHHHHHHHHHHHHHHH
Q 010001 458 LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 493 (520)
Q Consensus 458 l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~~l~~ 493 (520)
|||||+.++..|+|||+||+.||.+||++|+..+..
T Consensus 1153 LFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~~ 1188 (1713)
T PLN02976 1153 LFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNT 1188 (1713)
T ss_pred EEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999888899999999999999999987653
No 8
>PLN02568 polyamine oxidase
Probab=100.00 E-value=4.6e-44 Score=361.43 Aligned_cols=442 Identities=30% Similarity=0.425 Sum_probs=303.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCC-----CcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHc
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDAS-----FKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRL 100 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G-----~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~l 100 (520)
.+++||+|||||++||+||++|++.| ++|+|||+++++||++++....|+.+|.|++++++.. .+.+.++++++
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~g~~-~~~~~~l~~~~ 81 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGGERIEMGATWIHGIG-GSPVYKIAQEA 81 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCCeEEecCCceeCCCC-CCHHHHHHHHh
Confidence 45689999999999999999999987 8999999999999999999889999999999999874 67789999999
Q ss_pred CCCeeeecCCCccccccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhhc--CC-------------------
Q 010001 101 GLPLYRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREE--HD------------------- 159 (520)
Q Consensus 101 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------------------- 159 (520)
|+........ ....-.....+....+..++......+.+.+..++......... ..
T Consensus 82 g~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 158 (539)
T PLN02568 82 GSLESDEPWE---CMDGFPDRPKTVAEGGFEVDPSIVESISTLFRGLMDDAQGKLIEPSEVDEVDFVKLAAKAARVCESG 158 (539)
T ss_pred CCccccCcce---ecccccccceEEccCCcCCCHHHHHHHHHHHHHHHHHhhcccccccccccccccccchhccchhccC
Confidence 9953221000 00000011223444556666667666666666666544322100 00
Q ss_pred CCCcHHHHHHHHHhcCccccccccccCCCCcchhHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHhhhhhhcCCccc---c
Q 010001 160 EDMSIQRAISIVFDRRPELRFFEHVSSSLPGISLQRKLLDLLKLV-LTCRLEGLAHKVLQWYLCRMEGWFAADAET---I 235 (520)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 235 (520)
.+.++.+++...+.+. .+.+... ++... .....+......+.++. .++..+ ..... +
T Consensus 159 ~~~Sl~~fl~~~l~~~-----~~~~~~p------------~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~-~~~~~ls~l 219 (539)
T PLN02568 159 GGGSVGSFLRRGLDAY-----WDSVSAD------------EQIKGYGGWSRKLLEEAIFTMHE-NTQRTY-TSADDLSTL 219 (539)
T ss_pred CCCcHHHHHHHHHHHH-----Hhhcccc------------hhhccccchhHHHHHHHHHHHHH-Hhhccc-cccccHhhc
Confidence 0112222222211100 0000000 00000 00000000111111111 111111 22222 2
Q ss_pred cccccCccccccCCccccccChHHHHHHHhccC---CeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhhhc
Q 010001 236 SLKSWDKEELLPGGHGLMVRGYLPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKA 312 (520)
Q Consensus 236 ~~~~~~~~~~~~~g~~~~~~G~~~l~~~L~~gv---~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~ 312 (520)
+...........|....+.+|++.++++|.+.+ +|++|++|++|..+++++.|++.+|+++.||+||+|+|+..++.
T Consensus 220 s~~~~~~~~~~~g~~~~i~gG~~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~vL~~ 299 (539)
T PLN02568 220 DLAAESEYRMFPGEEITIAKGYLSVIEALASVLPPGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLGVLKA 299 (539)
T ss_pred cccccCcceecCCCeEEECCcHHHHHHHHHhhCCCCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHHHHhh
Confidence 222222222234557788999999999998766 49999999999999999999999998999999999999999975
Q ss_pred Cc----ccccCCCchHHHHHHhhcCCcceeEEEEEeCCCcccCC------ccceeecCCCC------ceeEee-----ec
Q 010001 313 RT----IKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV------EFLGVVSDTSY------GCSYFL-----NL 371 (520)
Q Consensus 313 l~----~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~------~~~g~~~~~~~------~~~~~~-----~~ 371 (520)
.. +.|.|+||....+++++++++..+|+++.|+++||.+. ...+.+..+.. ...++. ..
T Consensus 300 ~~~~~~i~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (539)
T PLN02568 300 GIGEDSGLFSPPLPDFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASIC 379 (539)
T ss_pred ccccccceecCCCCHHHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhcccccc
Confidence 32 46899999999999999999999999999999988642 11122211110 001111 01
Q ss_pred cCCCCceEEEEEechhhhHHHhcCCHHHHHHHHHHHHHHHCCCC-----------------------CCCcEEEeccCCC
Q 010001 372 HKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDA-----------------------SSPIQYLVSHWGT 428 (520)
Q Consensus 372 ~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~~~~-----------------------~~~~~~~~~~w~~ 428 (520)
....+..+|++++.++.+..++.++++++.+.+++.|+++++.. ..|..+.+++|..
T Consensus 380 ~~~~~~~vL~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~ 459 (539)
T PLN02568 380 PIHKNSSVLLSWFAGKEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGT 459 (539)
T ss_pred ccCCCCCEEEEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCC
Confidence 11235679999999999999999999999999999999999632 2578899999999
Q ss_pred CCCCCccccCCCCCCChhHHHHhcCCCC-------------cEEEeeccccCcCCccchHHHHHHHHHHHHHHHH
Q 010001 429 DANSLGSYSYDTVGKSHDLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 490 (520)
Q Consensus 429 ~~~~~g~~~~~~~~~~~~~~~~~~~p~~-------------~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~~ 490 (520)
+++++|+|++..++........++.|++ +|+|||+.++..++++|+||+.||.++|++|++.
T Consensus 460 dp~~~GsYs~~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~ 534 (539)
T PLN02568 460 DPLFLGSYSYVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQH 534 (539)
T ss_pred CCccCCccCCCcCCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHH
Confidence 9999999998888988777788888875 7999999999988899999999999999988774
No 9
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-41 Score=319.41 Aligned_cols=420 Identities=26% Similarity=0.354 Sum_probs=288.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcCCCee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY 105 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~ 105 (520)
....||||||||+|||+||++|.|+|++|+|+|+++++|||+.+.+..|.+.|.|++++.. .++.+..+++++|++..
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p--~~~~~l~~~k~~gv~~~ 82 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINP--THDALLAYAKEFGVPLE 82 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEeccceeeccCCcccCc--cchhhhhhHHhcCCCCC
Confidence 4578999999999999999999999999999999999999999988888999999888753 56678899999999865
Q ss_pred eecC--CCccccccCccceeeecCCCCccCHHHHHH---HHHHHHHHHHHHHHhhhcCCCCC-----cHHHHHHHHHhcC
Q 010001 106 RTSG--DNSVLYDHDLESYALFDMDGNQVPQELVTK---VGEAFESILKETDKVREEHDEDM-----SIQRAISIVFDRR 175 (520)
Q Consensus 106 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 175 (520)
++.. .+...+....... |...... +......+............... ...+.+..+ ..
T Consensus 83 ~fi~~g~~~~~~~~~~~~~----------p~~~~~~~~d~~~~~~~~~~~a~~~~~~~~~~t~~~~e~~~~~~~~W-~~- 150 (450)
T COG1231 83 PFIRDGDNVIGYVGSSKST----------PKRSLTAAADVRGLVAELEAKARSAGELDPGLTPEDRELDLESLAAW-KT- 150 (450)
T ss_pred ceeccCccccccccccccc----------chhccchhhhhcchhhhhhhhhhcccccCcccCcchhhhhhHHHHhh-hh-
Confidence 5443 2222221111111 1110000 00011111111111111111100 111111111 00
Q ss_pred ccccccccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHhh-hhhhcCCcccc---cccccC--ccccccC
Q 010001 176 PELRFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWY-LCRM-EGWFAADAETI---SLKSWD--KEELLPG 248 (520)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~---~~~~~~--~~~~~~~ 248 (520)
....+++...-..+ ..++ ..-+....+.. +..... .......
T Consensus 151 -------------------------------~~~~~~~~~~~a~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~ 199 (450)
T COG1231 151 -------------------------------SSLRGLSRDPGARVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRT 199 (450)
T ss_pred -------------------------------ccccccccCccceeccCCCCcccccchhhhhhhhhhhhccccccccccc
Confidence 00001110000000 0000 00000000000 000000 0011122
Q ss_pred CccccccChHHHHHHHhc--cCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCchHHH
Q 010001 249 GHGLMVRGYLPVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKE 326 (520)
Q Consensus 249 g~~~~~~G~~~l~~~L~~--gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~l~~~~~ 326 (520)
......|||+.+.+++++ |-+|.++++|.+|.+.+++|+|++.+..++.+|+||+|+|+..+. -+.|.|.+++...
T Consensus 200 ~~~~~~GGmd~la~Afa~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~--qI~f~P~l~~~~~ 277 (450)
T COG1231 200 QMLQRLGGMDQLAEAFAKQLGTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPLAILG--QIDFAPLLPAEYK 277 (450)
T ss_pred hhhccCccHHHHHHHHHHHhhceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecCHHHHh--hcccCCCCCHHHH
Confidence 333455999999999986 558999999999999999999999984599999999999999987 5689999999999
Q ss_pred HHHhhcCCcceeEEEEEeCCCcccCCc-cceeecCCCC-ceeEeeeccCCCCceEEEE-EechhhhHHHhcCCHHHHHHH
Q 010001 327 AAIDDLGVGIENKIIMHFDKVFWPNVE-FLGVVSDTSY-GCSYFLNLHKATGHCVLVY-MPAGQLARDIEKMSDEAAANF 403 (520)
Q Consensus 327 ~~~~~~~~~~~~~v~l~~~~~~~~~~~-~~g~~~~~~~-~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~ee~~~~ 403 (520)
++++.+.|.+.+|..+.|+.+||++.. +.|....+.. ...++......++..++.. +..+..+..|..+++++..+.
T Consensus 278 ~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~~tD~~~~~i~~~s~~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~ 357 (450)
T COG1231 278 QAAKGVPYGSATKIGVAFSRPFWEEAGILGGESLTDLGLGFISYPSAPFADGPGVLLGSYAFGDDALVIDALPEAERRQK 357 (450)
T ss_pred HHhcCcCcchheeeeeecCchhhhhcccCCceEeecCCcceEecCccccCCCceEEEeeeeccccceeEecCCHHHHHHH
Confidence 999999999999999999999999887 7776544433 2333333323466777776 566888888999999999999
Q ss_pred HHHHHHHHCC-CCCCCcEE-EeccCCCCCCCCccccCCCCCCChhHHHHhcCCCCcEEEeeccccCcCCccchHHHHHHH
Q 010001 404 AFTQLKKILP-DASSPIQY-LVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGL 481 (520)
Q Consensus 404 ~~~~L~~~~~-~~~~~~~~-~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egAi~SG~ 481 (520)
++.+|++++| ...++.++ ...+|..++++.|+++...+++..+..+.+..|.++|++||......+.||+||||+||.
T Consensus 358 vl~~l~~~~g~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~ 437 (450)
T COG1231 358 VLARLAKLFGDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGGWLEGAIRSGQ 437 (450)
T ss_pred HHHhHhhhCChhhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeecccccccchhHHHHHHHH
Confidence 9999999999 56666666 889999999999988888899999999999999999999996666667799999999999
Q ss_pred HHHHHHHHHHH
Q 010001 482 MAAEDCRMRVL 492 (520)
Q Consensus 482 ~aA~~i~~~l~ 492 (520)
+||.+|...+.
T Consensus 438 ~AA~ei~~~l~ 448 (450)
T COG1231 438 RAAAEIHALLS 448 (450)
T ss_pred HHHHHHHHhhc
Confidence 99999987654
No 10
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=100.00 E-value=7.3e-41 Score=313.07 Aligned_cols=427 Identities=30% Similarity=0.431 Sum_probs=299.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcC-CC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLG-LP 103 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg-~~ 103 (520)
....+|+|||||+|||+||.+|.+.|. +|+|+|+.+|+|||+.|....+..+|+|++|.+|. .++.+.++.++.| ++
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG~-~gNpVY~la~~~g~~~ 97 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHGE-EGNPVYELAKEYGDLK 97 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCCeEeecceeecCC-CCChHHHHHHHhCccc
Confidence 345699999999999999999998865 89999999999999999988888999999999984 6788999999988 33
Q ss_pred eeeecCCCccccccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhcCcccccccc
Q 010001 104 LYRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRFFEH 183 (520)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (520)
......... ........++..++......+......+......... .....++..++..-+.
T Consensus 98 ~~~~tg~~~-------~~~~~~~~~g~~V~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~SvG~~ln~~~~---------- 159 (498)
T KOG0685|consen 98 LLEVTGPAY-------VDNFHTRSNGEVVPEELLDELNEITVTLSDKLREAEI-AHDEGSVGEYLNSEFW---------- 159 (498)
T ss_pred eeccCCccc-------cceeEEEecCccCcHHHHHHHHHHHHhhhhhcccccc-cCccccHHHHHHHHHH----------
Confidence 222111111 1122233456666666555544433222111111000 1112234333321110
Q ss_pred ccCCCCcchhHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHhhhhhhc-CCcccccccccCccccccC--CccccccC
Q 010001 184 VSSSLPGISLQRKLLDLLKLVLTCR----LEGLAHKVLQWYLCRMEGWFA-ADAETISLKSWDKEELLPG--GHGLMVRG 256 (520)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--g~~~~~~G 256 (520)
+.++ ..+ .+.+..+++..++.......+ .+...+++..+..+....| .......|
T Consensus 160 ---------------~~~~---~~e~~~~~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~~ey~~~~ge~~~~~~~kG 221 (498)
T KOG0685|consen 160 ---------------DELR---GPENPEIDKTLAEEILNVYFKVECSITGADNLSEVSLRALLEYTECPGEELLIWNKKG 221 (498)
T ss_pred ---------------HHhc---cccccchhhHHHHHHHHHHHHHheeeeccCchhhhhhhhccceeecCchhhheechhH
Confidence 0000 000 122233334434333322233 3556777777777666666 66677889
Q ss_pred hHHHHHHHhccC-----------CeecCceeEEEEEeC-CeEEEEEcCCcEEEcCEEEEecChhhhhcCcc-cccCCCch
Q 010001 257 YLPVINTLAKGL-----------DIRLGHRVTKITRHY-IGVKVTVEGGKTFVADAVVVAVPLGVLKARTI-KFEPRLPD 323 (520)
Q Consensus 257 ~~~l~~~L~~gv-----------~i~~~~~V~~I~~~~-~~v~V~~~~g~~~~ad~VI~a~p~~~l~~l~~-~~~~~l~~ 323 (520)
+..+.+.|.+.. +++++++|.+|..++ +.+.|++.||+.+.||+||+++++..++.-.. -|.|+||.
T Consensus 222 y~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~ 301 (498)
T KOG0685|consen 222 YKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPA 301 (498)
T ss_pred HHHHHHHHhccCCCcchhcCchhhhcccccceeeccCCCCcEEEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCH
Confidence 999999886422 466779999999886 45899999999999999999999999876222 37899999
Q ss_pred HHHHHHhhcCCcceeEEEEEeCCCcccCC-ccceeec-CCC----------Cc--eeEeeeccCCCCceEEEEEechhhh
Q 010001 324 WKEAAIDDLGVGIENKIIMHFDKVFWPNV-EFLGVVS-DTS----------YG--CSYFLNLHKATGHCVLVYMPAGQLA 389 (520)
Q Consensus 324 ~~~~~~~~~~~~~~~~v~l~~~~~~~~~~-~~~g~~~-~~~----------~~--~~~~~~~~~~~~~~~l~~~~~~~~~ 389 (520)
...++|+++.++.++|+++-|.+++|+.+ ..+..+. ++. +. ...+.. ......+|..++.|..+
T Consensus 302 ~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~--v~~~~~vL~gWiaG~~~ 379 (498)
T KOG0685|consen 302 EKQRAIERLGFGTVNKIFLEFEEPFWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQP--VSWAPNVLLGWIAGREA 379 (498)
T ss_pred HHHHHHHhccCCccceEEEEccCCCCCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEE--cCcchhhhheeccCCcc
Confidence 99999999999999999999999999974 1111111 111 01 111111 12223688999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHCC--CCCCCcEEEeccCCCCCCCCccccCCCCCCChhHHHHh--------cCCCCcEE
Q 010001 390 RDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERL--------RIPVDNLF 459 (520)
Q Consensus 390 ~~~~~~~~ee~~~~~~~~L~~~~~--~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~--------~~p~~~l~ 459 (520)
..++++++|++++.+...|++.++ .++.|..+..+.|..+++++|+|+|-.++....-...+ .++.+.|.
T Consensus 380 ~~me~lsdEev~e~~~~~lr~fl~n~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~ 459 (498)
T KOG0685|consen 380 RHMETLSDEEVLEGLTKLLRKFLKNPEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQIL 459 (498)
T ss_pred eehhhCCHHHHHHHHHHHHHHhcCCCCCCCchhhhhhcccCCCccCceeeEeeccccccccchhhccCCccccCCCceEE
Confidence 999999999999999999999996 57888999999999999999999998777643222222 22346999
Q ss_pred EeeccccCcCCccchHHHHHHHHHHHHHHHHH
Q 010001 460 FAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 491 (520)
Q Consensus 460 ~aG~~~~~~~~g~~egAi~SG~~aA~~i~~~l 491 (520)
|||++++-.++.++.||++||.+-|+.+++.-
T Consensus 460 FAGEaThr~~YsTthGA~~SG~REA~RL~~~y 491 (498)
T KOG0685|consen 460 FAGEATHRTFYSTTHGAVLSGWREADRLLEHY 491 (498)
T ss_pred EccccccccceehhhhhHHhhHHHHHHHHHHH
Confidence 99999998888999999999999999887743
No 11
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=100.00 E-value=3.6e-40 Score=335.12 Aligned_cols=405 Identities=20% Similarity=0.277 Sum_probs=266.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhC----CCcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcCCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLP 103 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~----G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~ 103 (520)
++||+|||||+|||+||+.|+++ |++|+|+|+++++||+++|...+|+.+|.|+|++++. +..+.++++++|++
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~--~~~~~~l~~~lgl~ 79 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLER--KKSAPDLVKDLGLE 79 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccC--ChHHHHHHHHcCCC
Confidence 36999999999999999999999 9999999999999999999999999999999999743 45699999999987
Q ss_pred eeeec--CCCccccccCccceeeecCCCCccCHHHHHHHHHHH----HHHHHHHHHhh-hcCCCCCcHHHHHHHHHhcCc
Q 010001 104 LYRTS--GDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAF----ESILKETDKVR-EEHDEDMSIQRAISIVFDRRP 176 (520)
Q Consensus 104 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 176 (520)
..... ......+.+. .....+|......+...+ .++......+. .....+.++.+++...+.
T Consensus 80 ~~~~~~~~~~~~~~~~~--------g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~e~l~~~~g--- 148 (462)
T TIGR00562 80 HVLVSDATGQRYVLVNR--------GKLMPVPTKIAPFVKTGLFSLGGKLRAGMDFIRPASPGKDESVEEFVRRRFG--- 148 (462)
T ss_pred cccccCCCCceEEEECC--------CceecCCCChHHHhcCCCCCchhhHHhhhhhccCCCCCCCcCHHHHHHHhcC---
Confidence 43221 1111111110 111111211111100000 00000000000 112234566666544333
Q ss_pred cccccccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-hhhhcCCcccccccccC--------------
Q 010001 177 ELRFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWD-------------- 241 (520)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------------- 241 (520)
+++.+.++.++ .+.++.+++++++.+..
T Consensus 149 -------------------------------------~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~ 191 (462)
T TIGR00562 149 -------------------------------------DEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLI 191 (462)
T ss_pred -------------------------------------HHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHH
Confidence 33333333332 22333333333222100
Q ss_pred --------------cccc--ccCC-ccccccChHHHHHHHhcc---CCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEE
Q 010001 242 --------------KEEL--LPGG-HGLMVRGYLPVINTLAKG---LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAV 301 (520)
Q Consensus 242 --------------~~~~--~~~g-~~~~~~G~~~l~~~L~~g---v~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~V 301 (520)
...+ ..+. ...+.+|++.++++|++. ++|+++++|++|+.++++|.|++++|+++.||+|
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~V 271 (462)
T TIGR00562 192 LGMKKTRNLPQGSGLQLTAKKQGQDFQTLATGLETLPEEIEKRLKLTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSV 271 (462)
T ss_pred HHHHhhcccCccccccccccccCCceEecchhHHHHHHHHHHHhccCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEE
Confidence 0000 0111 456899999999999753 5799999999999999999999888888999999
Q ss_pred EEecChhhhhcCcccccCCCchHHHHHHhhcCCcceeEEEEEeCCCcccCC-ccceeecCCC---CceeEeee-----cc
Q 010001 302 VVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV-EFLGVVSDTS---YGCSYFLN-----LH 372 (520)
Q Consensus 302 I~a~p~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~-~~~g~~~~~~---~~~~~~~~-----~~ 372 (520)
|+|+|++.+..++ |++++...+.+.++.+.+..++.+.|++++|+.. ..++++.+.. ....+.++ ..
T Consensus 272 I~t~P~~~~~~ll----~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~ 347 (462)
T TIGR00562 272 VVTAPHKAAAGLL----SELSNSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNR 347 (462)
T ss_pred EECCCHHHHHHHh----cccCHHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCc
Confidence 9999999887543 4467777888999999999999999998877642 3345555432 11122222 12
Q ss_pred CCCCceEEEEEechhhhHHHhcCCHHHHHHHHHHHHHHHCCCCCCCcEEEeccCCCCCCCCccccCCCCCCChhHHHHhc
Q 010001 373 KATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLR 452 (520)
Q Consensus 373 ~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~ 452 (520)
.+++...+++++.+....++.+.+++++++.++++|+++++...+|....+++|.. +.+.|...+.......++.+.
T Consensus 348 ~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~gi~~~p~~~~v~rw~~---a~P~~~~g~~~~~~~i~~~l~ 424 (462)
T TIGR00562 348 APPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKKVLNINNEPEMLCVTRWHR---AIPQYHVGHDQRLKEARELLE 424 (462)
T ss_pred CCCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEeEccc---cCCCCCCChHHHHHHHHHHHH
Confidence 33556678888877777778889999999999999999997544588899999964 444443221111223333445
Q ss_pred CCCCcEEEeeccccCcCCccchHHHHHHHHHHHHHHHHHH
Q 010001 453 IPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 492 (520)
Q Consensus 453 ~p~~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~~l~ 492 (520)
.+.+||++||++... .++++|+.||.++|+++++.+.
T Consensus 425 ~~~~~l~l~G~~~~g---~~i~~~i~sg~~~a~~~~~~~~ 461 (462)
T TIGR00562 425 SAYPGVFLTGNSFEG---VGIPDCIDQGKAAASDVLTFLF 461 (462)
T ss_pred hhCCCEEEeccccCC---CcHHHHHHHHHHHHHHHHHhhc
Confidence 566899999999664 5899999999999999987653
No 12
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=100.00 E-value=1.5e-39 Score=329.74 Aligned_cols=408 Identities=16% Similarity=0.215 Sum_probs=262.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC------CCcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcCC
Q 010001 29 PSVIVIGAGMAGVAAARALHDA------SFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGL 102 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~------G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~ 102 (520)
++|+|||||+|||+||+.|+++ |++|+|||+++++||+++|.+.+|+.+|.|+|++++ .+..+.+++++||+
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~--~~~~~~~l~~~lgl 79 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVA--RNEHVMPLVKDLNL 79 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhc--CCHHHHHHHHHcCC
Confidence 4799999999999999999986 379999999999999999999999999999999864 35678999999999
Q ss_pred Ceeee--cCCCccccccCccceeeecCCCCccCHHHHHHHHHH------HHHHHHHHHHhhhcCCCCCcHHHHHHHHHhc
Q 010001 103 PLYRT--SGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEA------FESILKETDKVREEHDEDMSIQRAISIVFDR 174 (520)
Q Consensus 103 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (520)
+.... ......++.++. ...+.......+|......+... ..+.+............+.++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l------ 152 (463)
T PRK12416 80 EEEMVYNETGISYIYSDNT-LHPIPSDTIFGIPMSVESLFSSTLVSTKGKIVALKDFITKNKEFTKDTSLALFL------ 152 (463)
T ss_pred ccceecCCCCceEEEECCe-EEECCCCCeecCCCChHHhhcCCcCCHHHHHHhhhhhccCCCCCCCCCCHHHHH------
Confidence 74332 111222222111 00000000001111111111000 0001111110000111233444443
Q ss_pred CccccccccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-hhhhcCCcccccccccCcc----------
Q 010001 175 RPELRFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKE---------- 243 (520)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------- 243 (520)
.+.++++..+.++.++ .+.++.++.+++.......
T Consensus 153 ----------------------------------~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s 198 (463)
T PRK12416 153 ----------------------------------ESFLGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGS 198 (463)
T ss_pred ----------------------------------HHhcCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCc
Confidence 2345566666666654 4556667776655321100
Q ss_pred ---------c----cccCCccccccChHHHHHHHhccC---CeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecCh
Q 010001 244 ---------E----LLPGGHGLMVRGYLPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 307 (520)
Q Consensus 244 ---------~----~~~~g~~~~~~G~~~l~~~L~~gv---~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 307 (520)
. .....+.++.+|++.++++|++.+ +|+++++|++|+++++++.|.+.+|+++.||+||+|+|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~ 278 (463)
T PRK12416 199 IIKGFEENKKQFQSAGNKKFVSFKGGLSTIIDRLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPH 278 (463)
T ss_pred HHHHHHHhhhccCCCCCCceEeeCCCHHHHHHHHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCH
Confidence 0 001124478999999999998644 699999999999999999998888888999999999999
Q ss_pred hhhhcCcccccCCCchHHHHHHhhcCCcceeEEEEEeCCCccc-CCccceeecCCCCce----eEeeec---cCCCCceE
Q 010001 308 GVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWP-NVEFLGVVSDTSYGC----SYFLNL---HKATGHCV 379 (520)
Q Consensus 308 ~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~-~~~~~g~~~~~~~~~----~~~~~~---~~~~~~~~ 379 (520)
+.+..++. .|.+ ...+.++.+.+..++++.|+.+.|. +...+|++.++.... ..+.+. ...++..+
T Consensus 279 ~~~~~ll~--~~~l----~~~~~~~~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 352 (463)
T PRK12416 279 DIAETLLQ--SNEL----NEQFHTFKNSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKL 352 (463)
T ss_pred HHHHhhcC--Ccch----hHHHhcCCCCceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeE
Confidence 98876542 3433 3446677788899999999976542 223467765543211 111111 11223334
Q ss_pred EEE-Eec--hhhhHHHhcCCHHHHHHHHHHHHHHHCCCCCCCcEEEeccCCCCCCCCccccCCCCCCChhHHHHhcCCCC
Q 010001 380 LVY-MPA--GQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVD 456 (520)
Q Consensus 380 l~~-~~~--~~~~~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~ 456 (520)
++. ++. ++..+.+..++++++.+.++++|+++++...+|+.+.+++|.. +.+.|...+........+.+..+.+
T Consensus 353 l~~~~~~~~~~~~~~~~~~~dee~~~~~~~~L~~~lG~~~~p~~~~v~~W~~---a~P~y~~~~~~~~~~~~~~l~~~~~ 429 (463)
T PRK12416 353 LVRMFYKSTNPVYETIKNYSEEELVRVALYDIEKSLGIKGEPEVVEVTNWKD---LMPKYHLEHNQAVQSLQEKMMNLYP 429 (463)
T ss_pred EEEEEeCCCCCCchhhhcCCHHHHHHHHHHHHHHHhCCCCCceEEEEEEccc---cCCCcCcCHHHHHHHHHHHHHhhCC
Confidence 444 443 3567778889999999999999999998777899999999964 3333321111112233345556678
Q ss_pred cEEEeeccccCcCCccchHHHHHHHHHHHHHHHHH
Q 010001 457 NLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 491 (520)
Q Consensus 457 ~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~~l 491 (520)
||++||+++.+ .++++|+.||.++|++|++.+
T Consensus 430 ~l~~aG~~~~g---~~i~~ai~sg~~aA~~i~~~~ 461 (463)
T PRK12416 430 NIYLAGASYYG---VGIGACIGNGKNTANEIIATL 461 (463)
T ss_pred CeEEecccccc---ccHHHHHHHHHHHHHHHHHHh
Confidence 99999999775 589999999999999998754
No 13
>PLN02576 protoporphyrinogen oxidase
Probab=100.00 E-value=1.9e-38 Score=324.88 Aligned_cols=400 Identities=20% Similarity=0.232 Sum_probs=257.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhC-CCcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcCCCe
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~-G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (520)
+.++||+|||||+|||+||++|+++ |++|+|+|+++++||+++|...+|+.+|.|+|++.. .+..+..++++ |++.
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~~--~~~~~~~l~~~-gl~~ 86 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQP--SDPELTSAVDS-GLRD 86 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCCeEEecCCchhcc--CcHHHHHHHHc-CChh
Confidence 4668999999999999999999999 999999999999999999999999999999999863 34556677766 7752
Q ss_pred eee--c-CCCccccccCccceeeecCCCCccCHHHHHHH-------HHHHHHHHHHHHHh--hhcCCCCCcHHHHHHHHH
Q 010001 105 YRT--S-GDNSVLYDHDLESYALFDMDGNQVPQELVTKV-------GEAFESILKETDKV--REEHDEDMSIQRAISIVF 172 (520)
Q Consensus 105 ~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 172 (520)
... . ......+.++ ....+|......+ ...+ +........ ......+.++.+++..
T Consensus 87 ~~~~~~~~~~~~~~~~g---------~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~sv~~~l~~-- 154 (496)
T PLN02576 87 DLVFPDPQAPRYVVWNG---------KLRPLPSNPIDLPTFDLLSAPGKI-RAGLGAFGWKRPPPPGREESVGEFVRR-- 154 (496)
T ss_pred heecCCCCceEEEEECC---------EEEEcCCChHHhcCcCcCChhHHH-HHhHHHhhccCCCCCCCCCcHHHHHHH--
Confidence 211 1 1111111111 1111111111000 0000 000000000 0011234555555533
Q ss_pred hcCccccccccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-hhhhcCCcccccccccCcc-c------
Q 010001 173 DRRPELRFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKE-E------ 244 (520)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~------ 244 (520)
.++++..+.++.++ .+.++.+++++++...... .
T Consensus 155 --------------------------------------~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~ 196 (496)
T PLN02576 155 --------------------------------------HLGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRG 196 (496)
T ss_pred --------------------------------------hcCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhc
Confidence 34555555555544 4455555555544321100 0
Q ss_pred -----------------------------cccCCccccccChHHHHHHHhccC---CeecCceeEEEEEeCCe-EEEEE-
Q 010001 245 -----------------------------LLPGGHGLMVRGYLPVINTLAKGL---DIRLGHRVTKITRHYIG-VKVTV- 290 (520)
Q Consensus 245 -----------------------------~~~~g~~~~~~G~~~l~~~L~~gv---~i~~~~~V~~I~~~~~~-v~V~~- 290 (520)
........+.+|++.++++|++.+ +|++|++|++|++.+++ |.|+.
T Consensus 197 gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~la~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~ 276 (496)
T PLN02576 197 GSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQTLPDALAKRLGKDKVKLNWKVLSLSKNDDGGYSLTYD 276 (496)
T ss_pred CcHHHHHHHhhhhhcccccccccccccccccCCeeEeccchHHHHHHHHHHhhCcCcEEcCCEEEEEEECCCCcEEEEEe
Confidence 001123567899999999998644 59999999999998886 65543
Q ss_pred -cCCc-EEEcCEEEEecChhhhhcCcccccCCCchHHHHHHhhcCCcceeEEEEEeCCCcccCC-------ccceeecCC
Q 010001 291 -EGGK-TFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV-------EFLGVVSDT 361 (520)
Q Consensus 291 -~~g~-~~~ad~VI~a~p~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~-------~~~g~~~~~ 361 (520)
.+|+ ++.||+||+|+|+..+..++.. +++...+.+.++.+.+..+|.+.|++++|... ..+|.+.+.
T Consensus 277 ~~~g~~~~~ad~VI~a~P~~~l~~ll~~----~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~ 352 (496)
T PLN02576 277 TPEGKVNVTAKAVVMTAPLYVVSEMLRP----KSPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPR 352 (496)
T ss_pred cCCCceeEEeCEEEECCCHHHHHHHhcc----cCHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccC
Confidence 3553 6899999999999998875432 34556777889999999999999999887652 233443322
Q ss_pred C---Cce-eEeeec----cCCCCceEEEEEechhhhHHHhcCCHHHHHHHHHHHHHHHCCCC--CCCcEEEeccCCCCCC
Q 010001 362 S---YGC-SYFLNL----HKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDA--SSPIQYLVSHWGTDAN 431 (520)
Q Consensus 362 ~---~~~-~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~~~~--~~~~~~~~~~w~~~~~ 431 (520)
. ... .++.+. ..+++...++.++.+.....+.+++++++++.++++|+++++.. ..|....+++|..
T Consensus 353 ~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~--- 429 (496)
T PLN02576 353 KQGVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPK--- 429 (496)
T ss_pred CCCCceEEEEeecCcCCCCCCCCCEEEEEEECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCc---
Confidence 1 111 122111 12345567777888777788888999999999999999999743 3567777889964
Q ss_pred CCccccCCCCCCChhHHHHhcC---CC--CcEEEeeccccCcCCccchHHHHHHHHHHHHHHHHHH
Q 010001 432 SLGSYSYDTVGKSHDLYERLRI---PV--DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 492 (520)
Q Consensus 432 ~~g~~~~~~~~~~~~~~~~~~~---p~--~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~~l~ 492 (520)
+.+.|. ++.. ...+.+++ +. +||++||+++.+ .++++|+.||.++|++|++.+.
T Consensus 430 a~P~~~---~g~~-~~~~~~~~~l~~~~~~~l~~aG~~~~g---~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 430 AIPQYL---LGHL-DVLEAAEKMEKDLGLPGLFLGGNYRGG---VALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred ccCCCC---cCHH-HHHHHHHHHHHhcCCCCEEEeccccCC---ccHHHHHHHHHHHHHHHHHHHh
Confidence 333332 2221 22222222 22 799999999875 5899999999999999988754
No 14
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=100.00 E-value=3.6e-38 Score=320.17 Aligned_cols=399 Identities=22% Similarity=0.300 Sum_probs=253.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCC--CcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcCCCeee
Q 010001 29 PSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G--~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~ 106 (520)
++|+|||||+|||+||+.|+++| ++|+|||+++++||+++|...+|+.+|.|+|++++. +.++.++++++|++...
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~--~~~~~~l~~~lgl~~~~ 78 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLAR--KPSAPALVKELGLEDEL 78 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCC--cHHHHHHHHHcCCccce
Confidence 47999999999999999999988 899999999999999999999999999999988743 45699999999997432
Q ss_pred ec--CCCccccccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhh---------hcCCCCCcHHHHHHHHHhcC
Q 010001 107 TS--GDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVR---------EEHDEDMSIQRAISIVFDRR 175 (520)
Q Consensus 107 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 175 (520)
.. .....++.++. .+.+........+......+. ..+......+. .....+.++.+++
T Consensus 79 ~~~~~~~~~~~~~g~-~~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~l------- 147 (451)
T PRK11883 79 VANTTGQSYIYVNGK-LHPIPPGTVMGIPTSIAPFLF---AGLVSPIGKLRAAADLRPPRWKPGQDQSVGAFF------- 147 (451)
T ss_pred ecCCCCcceEEECCe-EEECCCCCeeccCCCchhhhc---CCCCCHHHHHHhhCcccCCCCCCCCCcCHHHHH-------
Confidence 21 11222222211 010000000001111100000 00000000000 0011222333333
Q ss_pred ccccccccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-hhhhcCCcccccccccCcc-----------
Q 010001 176 PELRFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKE----------- 243 (520)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------- 243 (520)
.+.+++.+.+.++.++ .+.++.+++.+++......
T Consensus 148 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 194 (451)
T PRK11883 148 ---------------------------------RRRFGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSL 194 (451)
T ss_pred ---------------------------------HHhccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcH
Confidence 2234555666666554 4456666666654331100
Q ss_pred ------cc------ccCCccccccChHHHHHHHhccC---CeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChh
Q 010001 244 ------EL------LPGGHGLMVRGYLPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 308 (520)
Q Consensus 244 ------~~------~~~g~~~~~~G~~~l~~~L~~gv---~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 308 (520)
.. -...+..+.+|++.++++|.+.+ +|+++++|++|+.+++++.|.+++|+++.||+||+|+|++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~ 274 (451)
T PRK11883 195 LRGMRKALPKEKKKTKGVFGTLKGGLQSLIEALEEKLPAGTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHP 274 (451)
T ss_pred HHHHHhhccccCCCCCCceEeeccHHHHHHHHHHHhCcCCeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHH
Confidence 00 01123468999999999998644 5999999999999998898988899899999999999999
Q ss_pred hhhcCcccccCCCchHHHHHHhhcCCcceeEEEEEeCCCcccCCccceeecC-C-CC-ceeEeeec-----cCCCCceEE
Q 010001 309 VLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSD-T-SY-GCSYFLNL-----HKATGHCVL 380 (520)
Q Consensus 309 ~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~-~-~~-~~~~~~~~-----~~~~~~~~l 380 (520)
.+.+++. ++...+.+.++.+.+..++++.|+.+++......+++.. + .. .....++. ..+++..++
T Consensus 275 ~~~~l~~------~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~ 348 (451)
T PRK11883 275 VLPSLFV------APPAFALFKTIPSTSVATVALAFPESATNLPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLL 348 (451)
T ss_pred HHHHhcc------ChhHHHHHhCCCCCceEEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEE
Confidence 9887532 123456778889999999999999885322233444433 1 11 11221211 123344444
Q ss_pred EEEechhhhHHHhcCCHHHHHHHHHHHHHHHCCCCCCCcEEEeccCCCCCCCCccccCCCCCCC---hhHHHHhcCCCCc
Q 010001 381 VYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKS---HDLYERLRIPVDN 457 (520)
Q Consensus 381 ~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~---~~~~~~~~~p~~~ 457 (520)
..+............+++++++.++++|+++++...++..+.+++|... .+.+ .++.. ...++.+.. ++|
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~rw~~a---~p~~---~~~~~~~~~~l~~~l~~-~~~ 421 (451)
T PRK11883 349 RLYVGRPGDEAVVDATDEELVAFVLADLSKVMGITGDPEFTIVQRWKEA---MPQY---GVGHIERVAELRAGLPH-YPG 421 (451)
T ss_pred EEecCCCCCchhccCCHHHHHHHHHHHHHHHhCCCCCceEEEEeecCcc---CCCC---CccHHHHHHHHHHhhhh-CCC
Confidence 4444333334456789999999999999999976567788899999753 2222 23331 112233333 679
Q ss_pred EEEeeccccCcCCccchHHHHHHHHHHHHHHH
Q 010001 458 LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 489 (520)
Q Consensus 458 l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~ 489 (520)
||+||+++.+ +++++|+.||.++|++|++
T Consensus 422 l~~aG~~~~g---~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 422 LYVAGASFEG---VGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred EEEECcccCC---ccHHHHHHHHHHHHHHHHh
Confidence 9999999763 5899999999999998865
No 15
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=100.00 E-value=1e-37 Score=301.23 Aligned_cols=403 Identities=23% Similarity=0.288 Sum_probs=284.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCC--CcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcCCCee-
Q 010001 29 PSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY- 105 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G--~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~- 105 (520)
+.|+|||||+|||+|||+|+|++ .+|+|||+.+++||.++|...+|+.+|.|+|.+..- ...+.+++++||++..
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~--~~~~l~li~eLGled~l 78 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLAR--KEEILDLIKELGLEDKL 78 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecc--hHHHHHHHHHhCcHHhh
Confidence 47999999999999999999999 899999999999999999999999999999988643 4778999999999843
Q ss_pred -eecCCCc-cccccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHH-hhhcCCCCCcHHHHHHHHHhcCccccccc
Q 010001 106 -RTSGDNS-VLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDK-VREEHDEDMSIQRAISIVFDRRPELRFFE 182 (520)
Q Consensus 106 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (520)
+...... +++++....+.... .-.+|..... ......+++..... .......+.++.+++
T Consensus 79 ~~~~~~~~~i~~~gkl~p~P~~~--i~~ip~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~sv~~f~-------------- 141 (444)
T COG1232 79 LWNSTARKYIYYDGKLHPIPTPT--ILGIPLLLLS-SEAGLARALQEFIRPKSWEPKQDISVGEFI-------------- 141 (444)
T ss_pred ccCCcccceEeeCCcEEECCccc--eeecCCcccc-chhHHHHHHHhhhcccCCCCCCCcCHHHHH--------------
Confidence 2223333 33333332222111 1111111100 00111122222211 123455677888777
Q ss_pred cccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-hhhhcCCcccccccc-cCccc--------c-------
Q 010001 183 HVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRM-EGWFAADAETISLKS-WDKEE--------L------- 245 (520)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~--------~------- 245 (520)
+..+++++.+.++.++ .+.|+.+.+.+|+.. +.... .
T Consensus 142 --------------------------r~~fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~ 195 (444)
T COG1232 142 --------------------------RRRFGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKE 195 (444)
T ss_pred --------------------------HHHHhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhc
Confidence 6688999999888886 779999999998873 22100 0
Q ss_pred -------ccCCccccccChHHHHHHHhccC--CeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhhhcCccc
Q 010001 246 -------LPGGHGLMVRGYLPVINTLAKGL--DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIK 316 (520)
Q Consensus 246 -------~~~g~~~~~~G~~~l~~~L~~gv--~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~ 316 (520)
..+-+.++.+|++.++++|++.+ +|+++++|++|.++.+++.+.+.+|.++.||.||+|+|++.+..++..
T Consensus 196 ~~~~~~~~~~~~~~~~gG~~~l~~al~~~l~~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~ 275 (444)
T COG1232 196 GLPKQSLKKEKFGYLRGGLQSLIEALAEKLEAKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELARLLGD 275 (444)
T ss_pred cCcccccccccccccCccHHHHHHHHHHHhhhceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHHHcCC
Confidence 01245678999999999998644 688999999999998888888888989999999999999998776443
Q ss_pred ccCCCchHHHHHHhhcCCcceeEEEEEeCCCccc-CCccceeecCCCC--ceeE-----eeeccCCCCceEEEEEechhh
Q 010001 317 FEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWP-NVEFLGVVSDTSY--GCSY-----FLNLHKATGHCVLVYMPAGQL 388 (520)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~-~~~~~g~~~~~~~--~~~~-----~~~~~~~~~~~~l~~~~~~~~ 388 (520)
....+....+.+.....|.+.+++.-.+ ..+.+|+.+.+.. ...+ +++...+.++..+.+......
T Consensus 276 ------~~~~~~~~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g 349 (444)
T COG1232 276 ------EAVSKAAKELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPG 349 (444)
T ss_pred ------cchhhhhhhccccceEEEEEEeccccccCCCCceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCC
Confidence 2235567777887777888888775111 1123444433322 2222 222234457777777777766
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHHCCCCCCCcEEEeccCCCCCCCCccccCCCCCCChhHHHHhcCCCCcEEEeeccccCc
Q 010001 389 ARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMS 468 (520)
Q Consensus 389 ~~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~ 468 (520)
.+....++|||+++.+++.|.++++...+|..+.++||. .+.++|...+.......+..+.+.++|+..+|.+..+
T Consensus 350 ~~~~~~~~dee~~~~~l~~L~~~~~~~~~~~~~~v~r~~---~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g- 425 (444)
T COG1232 350 DESVSTMSDEELVAAVLDDLKKLGGINGDPVFVEVTRWK---YAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEG- 425 (444)
T ss_pred CcchhccCHHHHHHHHHHHHHHHcCcCcchhheeeeecc---ccCCccchhHHHHHHHHHHhhccccCCeEEeccCCCC-
Confidence 676778899999999999999999998888899999994 3555555443333455556666555899999998765
Q ss_pred CCccchHHHHHHHHHHHHHH
Q 010001 469 YPGSVHGAFSTGLMAAEDCR 488 (520)
Q Consensus 469 ~~g~~egAi~SG~~aA~~i~ 488 (520)
-++.+||.+|..||++++
T Consensus 426 --~g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 426 --VGLPDCIAAGKEAAEQLL 443 (444)
T ss_pred --CCchHHHHHHHHHHHHhh
Confidence 278899999999999765
No 16
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=6.4e-37 Score=309.63 Aligned_cols=402 Identities=20% Similarity=0.225 Sum_probs=249.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcCCCee--ee
Q 010001 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY--RT 107 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~--~~ 107 (520)
+|+|||||+|||+||+.|+++|++|+|+|+++++||++++...+|+.+|.|+|++.+ .+.++.++++++|++.. +.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~--~~~~~~~l~~~lg~~~~~~~~ 78 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFK--SDEALLELLDELGLEDKLRWR 78 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhcc--ccHHHHHHHHHcCCCCceeec
Confidence 699999999999999999999999999999999999999999999999999998864 45789999999998632 22
Q ss_pred cCCCccccccCccceeeecCCCC--cc-CHHHHHHHHHHHHHHHHHHHH-hhhcCCCCCcHHHHHHHHHhcCcccccccc
Q 010001 108 SGDNSVLYDHDLESYALFDMDGN--QV-PQELVTKVGEAFESILKETDK-VREEHDEDMSIQRAISIVFDRRPELRFFEH 183 (520)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (520)
.....+++.+.. +.+ ..... .. .....+.+...+.. ..... .........++.+++
T Consensus 79 ~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~l--------------- 138 (434)
T PRK07233 79 ETKTGYYVDGKL--YPL-GTPLELLRFPHLSLIDKFRLGLLT--LLARRIKDWRALDKVPAEEWL--------------- 138 (434)
T ss_pred cCceEEEECCeE--ecC-CCHHHHHcCCCCCHHHHHHhHHHH--HhhhhcccccccccccHHHHH---------------
Confidence 222222221110 000 00000 00 00001111000000 00000 000001112222222
Q ss_pred ccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-hhhhcCCcccccccccCccc---c------ccCCcccc
Q 010001 184 VSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEE---L------LPGGHGLM 253 (520)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~------~~~g~~~~ 253 (520)
. ..+++...+.++.++ ...++.+++.+++.++.... . ......++
T Consensus 139 --------------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (434)
T PRK07233 139 --------------R-----------RWSGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYL 193 (434)
T ss_pred --------------H-----------HhcCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEecc
Confidence 1 122444555555554 55677777777765432110 0 01235678
Q ss_pred ccChHHHHHHHhc-----cCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCchHHHHH
Q 010001 254 VRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAA 328 (520)
Q Consensus 254 ~~G~~~l~~~L~~-----gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~l~~~~~~~ 328 (520)
.+|++.++++|.+ |++|+++++|++|+.+++++.+...+++++.+|+||+|+|++.+..++ |.++....+.
T Consensus 194 ~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll----~~~~~~~~~~ 269 (434)
T PRK07233 194 EGGFATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPILARLV----PDLPADVLAR 269 (434)
T ss_pred CCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHHHHHhhc----CCCcHHHHhh
Confidence 9999999999863 779999999999999888876555667789999999999999887643 4455656667
Q ss_pred HhhcCCcceeEEEEEeCCCcccCCccceeecCCCCceeEe-e-ec---cCCCCceEE--EEEechhhhHHHhcCCHHHHH
Q 010001 329 IDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYF-L-NL---HKATGHCVL--VYMPAGQLARDIEKMSDEAAA 401 (520)
Q Consensus 329 ~~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~~~~~-~-~~---~~~~~~~~l--~~~~~~~~~~~~~~~~~ee~~ 401 (520)
+..+.+.+...+++.++++..+ ..+.....++......+ . +. ..++++..+ ..++.+.. ++...+++++.
T Consensus 270 ~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~ 346 (434)
T PRK07233 270 LRRIDYQGVVCMVLKLRRPLTD-YYWLNINDPGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDH--PLWQMSDEELL 346 (434)
T ss_pred hcccCccceEEEEEEecCCCCC-CceeeecCCCCCcceEEEecccCCccccCCceEEEEeeecCCCC--hhhcCCHHHHH
Confidence 7888888888899999887543 11111111111111111 1 11 112344433 22333322 35578899999
Q ss_pred HHHHHHHHHHCCCCCC--CcEEEeccCCCCCCCCccccCCCCCCChhHHHHhcCCCCcEEEeeccccCcCCccchHHHHH
Q 010001 402 NFAFTQLKKILPDASS--PIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFST 479 (520)
Q Consensus 402 ~~~~~~L~~~~~~~~~--~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egAi~S 479 (520)
+.++++|++++|.+.. +....+.+| +++.+.+ .++ ....++.++++++|||+||+++...+.++|++|+.|
T Consensus 347 ~~~~~~L~~~~p~~~~~~~~~~~~~r~---~~a~~~~---~~g-~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~s 419 (434)
T PRK07233 347 DRFLSYLRKMFPDFDRDDVRAVRISRA---PYAQPIY---EPG-YLDKIPPYDTPIEGLYLAGMSQIYPEDRSINGSVRA 419 (434)
T ss_pred HHHHHHHHHhCCCCChhheeeEEEEEe---ccccccc---cCc-hhhcCCCcccCcCCEEEeCCcccCCccCchhHHHHH
Confidence 9999999999996532 344455555 3333332 233 235556678889999999995443333589999999
Q ss_pred HHHHHHHHHHHHH
Q 010001 480 GLMAAEDCRMRVL 492 (520)
Q Consensus 480 G~~aA~~i~~~l~ 492 (520)
|.+||++|++.++
T Consensus 420 G~~aA~~i~~~~~ 432 (434)
T PRK07233 420 GRRVAREILEDRR 432 (434)
T ss_pred HHHHHHHHhhhhc
Confidence 9999999988765
No 17
>PLN02612 phytoene desaturase
Probab=100.00 E-value=3.3e-36 Score=308.39 Aligned_cols=431 Identities=20% Similarity=0.257 Sum_probs=252.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecC-CCCcccccccceecCCCCCCchHHHHHHcCCCe
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY-SFGFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (520)
.++.+|+|||||++||+||++|+++|++|+|+|+++++||++.++. .+|+.+|.|+|++.+. +.++.++++++|++.
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~--~~~~~~ll~elG~~~ 168 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGA--YPNVQNLFGELGIND 168 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCC--CchHHHHHHHhCCcc
Confidence 3568999999999999999999999999999999999999999975 4789999999999854 457999999999964
Q ss_pred eee--cCCCccccccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhcCccccccc
Q 010001 105 YRT--SGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRFFE 182 (520)
Q Consensus 105 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (520)
... ..............+..+.. ....|.. .... ..++.. ....++.+.+.......+......
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~P~~-l~~~----~~~l~~--------~~~ls~~~kl~~~~~~~~~~~~~~ 234 (567)
T PLN02612 169 RLQWKEHSMIFAMPNKPGEFSRFDF-PEVLPAP-LNGI----WAILRN--------NEMLTWPEKIKFAIGLLPAIVGGQ 234 (567)
T ss_pred cceecccceEEEecCCCCceeeCcC-chhcCCh-hhhh----HHHHhc--------CccCCHHHHHHHHHhhhHHhcccc
Confidence 321 11111111111111111000 0001111 0000 000000 000011111110000000000000
Q ss_pred cccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-hhhhcCCcccccccccCcc--ccccC--C--cccccc
Q 010001 183 HVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKE--ELLPG--G--HGLMVR 255 (520)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~--g--~~~~~~ 255 (520)
......++.++.+++. +.++++.+.+.++.++ ...+..+++++++..+... ..+.+ + ..++.+
T Consensus 235 ~~~~~~d~~Sv~e~l~----------~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~~G 304 (567)
T PLN02612 235 AYVEAQDGLSVKEWMR----------KQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDG 304 (567)
T ss_pred hhhhhcCcCcHHHHHH----------hcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHHhccCCceEeeecC
Confidence 0001122233333322 4555666665555554 3445556666665543310 01111 1 112233
Q ss_pred C-----hHHHHHHHh-ccCCeecCceeEEEEEeCCe--EEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCchHHHH
Q 010001 256 G-----YLPVINTLA-KGLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEA 327 (520)
Q Consensus 256 G-----~~~l~~~L~-~gv~i~~~~~V~~I~~~~~~--v~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~l~~~~~~ 327 (520)
+ .+.+++.|. .|++|++|++|++|+.++++ +.|.+.+|+++.+|+||+|+|++.+..++....+ +....+
T Consensus 305 ~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~--~~~~~~ 382 (567)
T PLN02612 305 NPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWK--EIPYFK 382 (567)
T ss_pred CchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchhc--CcHHHH
Confidence 3 255555553 48899999999999986555 3577788989999999999999988765443211 223445
Q ss_pred HHhhcCCcceeEEEEEeCCCcccCCccceeecCCCCceeEeeec------cCCCCceEEEEEechhhhHHHhcCCHHHHH
Q 010001 328 AIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNL------HKATGHCVLVYMPAGQLARDIEKMSDEAAA 401 (520)
Q Consensus 328 ~~~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~ 401 (520)
.+..+.+.++.++++.|+.++|.... +.+.........+.+. ..+++..++.+.. ....+|..+++|+++
T Consensus 383 ~l~~l~~~~v~~v~l~~dr~~~~~~~--~~~~~~~~~~~~~~d~S~~~~~~~~~~~~ll~~~~--~~a~~~~~~sdeei~ 458 (567)
T PLN02612 383 KLDKLVGVPVINVHIWFDRKLKNTYD--HLLFSRSPLLSVYADMSTTCKEYYDPNKSMLELVF--APAEEWISRSDEDII 458 (567)
T ss_pred HHHhcCCCCeEEEEEEECcccCCCCC--ceeecCCCCceeehhhhhcchhhcCCCCeEEEEEE--EcChhhhcCCHHHHH
Confidence 56667788899999999999875321 2222211111111111 0123344444332 246789999999999
Q ss_pred HHHHHHHHHHCCCCCCC----cEEEeccCCCCCCCCccccCCCCCCChhHHHHhcCCCCcEEEeeccccCcCCccchHHH
Q 010001 402 NFAFTQLKKILPDASSP----IQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAF 477 (520)
Q Consensus 402 ~~~~~~L~~~~~~~~~~----~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egAi 477 (520)
+.++++|++++|....+ ..+....+...+.+. |.. .++. ...+|.+++|++|||+|||++..+|+++||||+
T Consensus 459 e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~--~~~-~pg~-~~~rp~~~tPi~~l~lAGd~t~~~~~~smeGAv 534 (567)
T PLN02612 459 DATMKELAKLFPDEISADQSKAKILKYHVVKTPRSV--YKT-VPNC-EPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAV 534 (567)
T ss_pred HHHHHHHHHHCCcccccccCCceEEEEEEeccCCce--EEe-CCCC-cccCccccCccCCEEEeecceeCCchhhHHHHH
Confidence 99999999999875322 122222222222221 211 1232 234677789999999999999988889999999
Q ss_pred HHHHHHHHHHHHHHH
Q 010001 478 STGLMAAEDCRMRVL 492 (520)
Q Consensus 478 ~SG~~aA~~i~~~l~ 492 (520)
.||.+||++|++.+.
T Consensus 535 ~SG~~AA~~I~~~~~ 549 (567)
T PLN02612 535 LSGKLCAQSIVQDYE 549 (567)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988763
No 18
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=100.00 E-value=5.6e-36 Score=302.85 Aligned_cols=421 Identities=21% Similarity=0.287 Sum_probs=250.3
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecC-CCCcccccccceecCCCCCCchHHHHHHcCCCeeeec
Q 010001 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY-SFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS 108 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~ 108 (520)
+|+|||||++||+||++|+++|++|+|+|+++++||+++|.. .+|+.+|.|+|++.+. +.++.++++++|++.....
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~--~~~~~~l~~~lg~~~~~~~ 78 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGA--YPNMLQLLKELNIEDRLQW 78 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccC--CchHHHHHHHcCCccceee
Confidence 589999999999999999999999999999999999999864 5789999999998743 5678999999998633211
Q ss_pred CCCccccc--cCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhcCccccccccccC
Q 010001 109 GDNSVLYD--HDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRFFEHVSS 186 (520)
Q Consensus 109 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (520)
......+. ............ .++... ..... ++.. ....+..+.+.......+..........
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~----~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (453)
T TIGR02731 79 KSHSMIFNQPDKPGTFSRFDFP--DIPAPF-NGVAA----ILRN--------NDMLTWPEKIKFAIGLLPAIVRGQKYVE 143 (453)
T ss_pred cCCceEEecCCCCcceeeccCC--CCCCCH-HHHHH----HhcC--------cCCCCHHHHHHHHHHhHHHHhcCccchh
Confidence 11111111 000011111000 011100 00000 0000 0001111111100000000000000000
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-hhhhcCCcccccccccCcccc--cc--CCc-c-ccccC---
Q 010001 187 SLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEEL--LP--GGH-G-LMVRG--- 256 (520)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~--~g~-~-~~~~G--- 256 (520)
.++..++.+++. +.++++.+.+.++.++ ...++.++..+++..+..... +. .+. . ...++
T Consensus 144 ~~~~~s~~~~l~----------~~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~ 213 (453)
T TIGR02731 144 EQDKYTVTEWLR----------KQGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPE 213 (453)
T ss_pred hhccCCHHHHHH----------HcCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCChH
Confidence 111222222221 4566666666666665 445566777766655331110 11 111 1 12222
Q ss_pred --hHHHHHHHh-ccCCeecCceeEEEEEeCCe-E-EEEEcCCc-----EEEcCEEEEecChhhhhcCcccccCCCc-hHH
Q 010001 257 --YLPVINTLA-KGLDIRLGHRVTKITRHYIG-V-KVTVEGGK-----TFVADAVVVAVPLGVLKARTIKFEPRLP-DWK 325 (520)
Q Consensus 257 --~~~l~~~L~-~gv~i~~~~~V~~I~~~~~~-v-~V~~~~g~-----~~~ad~VI~a~p~~~l~~l~~~~~~~l~-~~~ 325 (520)
.+.+.+.|+ .|++|++|++|++|+.++++ + .|.+.+|+ ++.+|.||+|+|++.+..++.. .++ ...
T Consensus 214 ~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~---~~~~~~~ 290 (453)
T TIGR02731 214 RLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQ---PWKQMPF 290 (453)
T ss_pred HHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCch---hhhcCHH
Confidence 455555554 48899999999999875544 4 56666665 7899999999999987765321 111 234
Q ss_pred HHHHhhcCCcceeEEEEEeCCCcccCCccceeecCCCCceeEee-e----ccCCCCceEEEEEechhhhHHHhcCCHHHH
Q 010001 326 EAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFL-N----LHKATGHCVLVYMPAGQLARDIEKMSDEAA 400 (520)
Q Consensus 326 ~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~~~~~~-~----~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~ 400 (520)
.+.+..+.+.+..++++.++++++....+ .+..+......+. . ...+++..++.+++. ....+..+++||+
T Consensus 291 ~~~~~~~~~~~~~~v~l~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~ee~ 366 (453)
T TIGR02731 291 FQKLNGLEGVPVINVHIWFDRKLTTVDHL--LFSRSPLLSVYADMSETCKEYADPDKSMLELVFA--PAADWIGRSDEEI 366 (453)
T ss_pred HHHhhcCCCCcEEEEEEEEccccCCCCce--eeeCCCcceeecchhhhChhhcCCCCeEEEEEec--ChhhhhcCCHHHH
Confidence 45566677778999999999988754311 1111111110000 0 011233334333332 2366788999999
Q ss_pred HHHHHHHHHHHCCCC---CCCcEEEeccCCCCCCCCccccCCCCCCChhHHHHhcCCCCcEEEeeccccCcCCccchHHH
Q 010001 401 ANFAFTQLKKILPDA---SSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAF 477 (520)
Q Consensus 401 ~~~~~~~L~~~~~~~---~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egAi 477 (520)
++.++++|++++|.. .++.++..++|..++++. |. ..++. ....+.+++|++|||+||+++..+|+|+||||+
T Consensus 367 ~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~--~~-~~pg~-~~~~~~~~~p~~~l~~AG~~~a~~~~g~~egAi 442 (453)
T TIGR02731 367 IDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSV--YK-TTPGR-QQYRPHQKTPIPNFFLAGDYTKQKYLASMEGAV 442 (453)
T ss_pred HHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCce--ec-cCCCC-hhhCccccCccCCEEEeehhccCcccccHHHHH
Confidence 999999999999853 246667778887777763 32 23563 467788999999999999999998989999999
Q ss_pred HHHHHHHHHHH
Q 010001 478 STGLMAAEDCR 488 (520)
Q Consensus 478 ~SG~~aA~~i~ 488 (520)
.||.+||++|+
T Consensus 443 ~SG~~AA~~v~ 453 (453)
T TIGR02731 443 LSGKLCAQAIV 453 (453)
T ss_pred HHHHHHHHHhC
Confidence 99999999874
No 19
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=100.00 E-value=2.1e-36 Score=307.35 Aligned_cols=235 Identities=37% Similarity=0.545 Sum_probs=191.6
Q ss_pred ccccChHHHHHHHhc--cCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCchHHHHHH
Q 010001 252 LMVRGYLPVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAI 329 (520)
Q Consensus 252 ~~~~G~~~l~~~L~~--gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~l~~~~~~~~ 329 (520)
...+++..+...+.. |.+|++|++|++|+.+++++.|.+.+|+++.||+||+|+|+..+.. +.+.|++|....+.+
T Consensus 206 ~~~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p~l~~~~~~a~ 283 (450)
T PF01593_consen 206 VGMGGLSLALALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKN--ILLLPPLPEDKRRAI 283 (450)
T ss_dssp EETTTTHHHHHHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHT--SEEESTSHHHHHHHH
T ss_pred ecccchhHHHHHHHhhcCceeecCCcceeccccccccccccccceEEecceeeecCchhhhhh--hhhcccccccccccc
Confidence 344555555555543 7799999999999999999999999999999999999999999874 567888999888889
Q ss_pred hhcCCcceeEEEEEeCCCcccCC-ccceeecCCC-Cce-eEeeeccCC--CCceEEEEEechhhhHHHhcCCHHHHHHHH
Q 010001 330 DDLGVGIENKIIMHFDKVFWPNV-EFLGVVSDTS-YGC-SYFLNLHKA--TGHCVLVYMPAGQLARDIEKMSDEAAANFA 404 (520)
Q Consensus 330 ~~~~~~~~~~v~l~~~~~~~~~~-~~~g~~~~~~-~~~-~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~ 404 (520)
..+++.+..++++.|+.++|+.. ...+.+..+. ... .+......+ ++..++..++.+.....+..++++++++.+
T Consensus 284 ~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~ 363 (450)
T PF01593_consen 284 ENLPYSSVSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDPSKFPGRPGGGVLTSYVGGPDAPEWDDLSDEEILERV 363 (450)
T ss_dssp HTEEEEEEEEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEECCTTSCTTSEEEEEEEEHHHHHHHTTSCHHHHHHHH
T ss_pred cccccCcceeEEEeeecccccccccccceecccCccccccccccccCcccccCCcceeeeeccccchhcccchhhhHHHH
Confidence 99999999999999999999986 4666665554 222 222222222 357788888888878889999999999999
Q ss_pred HHHHHHHCC--CCCCCcEEEeccCCCCCCCCccccCCCCCCChhHHHHhcCCC-CcEEEeeccccCcCCccchHHHHHHH
Q 010001 405 FTQLKKILP--DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV-DNLFFAGEATSMSYPGSVHGAFSTGL 481 (520)
Q Consensus 405 ~~~L~~~~~--~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~-~~l~~aG~~~~~~~~g~~egAi~SG~ 481 (520)
+++|+++++ ...+|..+.+.+|..+++..+.|.+..++.....++.+++|+ +||||||+++++.+.|+++||+.||.
T Consensus 364 ~~~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~ 443 (450)
T PF01593_consen 364 LDDLRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGR 443 (450)
T ss_dssp HHHHHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHH
T ss_pred HHHhhhccccccccccccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHHHHH
Confidence 999999999 456677889999999999888888776766556889999999 69999999999877789999999999
Q ss_pred HHHHHHH
Q 010001 482 MAAEDCR 488 (520)
Q Consensus 482 ~aA~~i~ 488 (520)
+||++|+
T Consensus 444 ~aA~~il 450 (450)
T PF01593_consen 444 RAAEEIL 450 (450)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999885
No 20
>PRK07208 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=302.27 Aligned_cols=403 Identities=18% Similarity=0.163 Sum_probs=251.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcCCC-e
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLP-L 104 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~-~ 104 (520)
.+++||+|||||+|||+||+.|+++|++|+|+|+++++||+++|...+|+.+|.|+|++.. .+..+.+++++++.. .
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~~--~~~~~~~l~~~l~~~~~ 79 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDIGGHRFFS--KSPEVMDLWNEILPDDD 79 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCCceEccCCceecc--CCHHHHHHHHHhcCCCc
Confidence 4678999999999999999999999999999999999999999998999999999998863 467799999999862 1
Q ss_pred e-eecCCCccccccCccceeeecCCCCccCHHHHHHHHH----HHHHHHHH-HHHhhhcCCCCCcHHHHHHHHHhcCccc
Q 010001 105 Y-RTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGE----AFESILKE-TDKVREEHDEDMSIQRAISIVFDRRPEL 178 (520)
Q Consensus 105 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (520)
. ........++.+.. ..+|......+.. ...+.... ..........+.++.+++
T Consensus 80 ~~~~~~~~~~~~~g~~----------~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~l---------- 139 (479)
T PRK07208 80 FLLRPRLSRIYYRGKF----------FDYPLKAFDALKNLGLWRTAKCGASYLKARLRPRKEEDSFEDWV---------- 139 (479)
T ss_pred cccccccceEEECCEE----------ecCCcchhHHHHhCCHhHHHHHHHHHHHHhcCCCCCCCCHHHHH----------
Confidence 1 11111111221111 1111110000000 00000000 000000112234555544
Q ss_pred cccccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-hhhhcCCcccccccccCcc--------------
Q 010001 179 RFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKE-------------- 243 (520)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------------- 243 (520)
...+++++.+.++.++ .+.|+.+++++++.+....
T Consensus 140 ------------------------------~~~~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 189 (479)
T PRK07208 140 ------------------------------INRFGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNAL 189 (479)
T ss_pred ------------------------------HHhhCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHh
Confidence 3345666677666665 5567777777776532210
Q ss_pred --------------ccccCCccccccChHHHHHHHhc-----cCCeecCceeEEEEEeCCeE--EEEE--cCCc--EEEc
Q 010001 244 --------------ELLPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGV--KVTV--EGGK--TFVA 298 (520)
Q Consensus 244 --------------~~~~~g~~~~~~G~~~l~~~L~~-----gv~i~~~~~V~~I~~~~~~v--~V~~--~~g~--~~~a 298 (520)
......+.++.+|++.++++|++ |++|++|++|++|..+++++ .+.. .+|+ ++.|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~a 269 (479)
T PRK07208 190 RRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTA 269 (479)
T ss_pred hhcccccccCCCccccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEc
Confidence 00012345678999999988853 78999999999999988763 2332 2453 5889
Q ss_pred CEEEEecChhhhhcCcccccCCCchHHHHHHhhcCCcceeEEEEEeCCCcccCCccceeecCCCCc------eeEeeecc
Q 010001 299 DAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYG------CSYFLNLH 372 (520)
Q Consensus 299 d~VI~a~p~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~------~~~~~~~~ 372 (520)
|+||+|+|++.+..++ .+.+|....+.+..+.+.+..++++.++++......+. ++.+.... ...+....
T Consensus 270 d~VI~a~p~~~l~~~l---~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~ 345 (479)
T PRK07208 270 DQVISSMPLRELVAAL---DPPPPPEVRAAAAGLRYRDFITVGLLVKELNLFPDNWI-YIHDPDVKVGRLQNFNNWSPYL 345 (479)
T ss_pred CEEEECCCHHHHHHhc---CCCCCHHHHHHHhCCCcceeEEEEEEecCCCCCCCceE-EecCCCCccceecccccCCccc
Confidence 9999999999877643 24567777777888888888889999987643332221 11111100 01111112
Q ss_pred CCCCc-eEEE-EEechhhhHHHhcCCHHHHHHHHHHHHHHHCCC-CCCCcEEEeccCCCCCCCCccccCCCCCCChhHHH
Q 010001 373 KATGH-CVLV-YMPAGQLARDIEKMSDEAAANFAFTQLKKILPD-ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYE 449 (520)
Q Consensus 373 ~~~~~-~~l~-~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~~~-~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~ 449 (520)
.+++. ..+. .+.... ....+.++++++++.++++|+++... ..++....+.+|. ++.+.|...+-......++
T Consensus 346 ~p~g~~~~l~~~~~~~~-~~~~~~~~deel~~~~~~~L~~l~~~~~~~~~~~~v~r~~---~a~P~y~~~~~~~~~~~~~ 421 (479)
T PRK07208 346 VPDGRDTWLGLEYFCFE-GDDLWNMSDEDLIALAIQELARLGLIRPADVEDGFVVRVP---KAYPVYDGTYERNVEIIRD 421 (479)
T ss_pred CCCCCceEEEEEEEccC-CCccccCCHHHHHHHHHHHHHHcCCCChhheeEEEEEEec---CcccCCCchHHHHHHHHHH
Confidence 23443 2222 122222 22345789999999999999997432 2345667777873 3444443221111112222
Q ss_pred HhcCCCCcEEEeeccccCcCCccchHHHHHHHHHHHHHHHH
Q 010001 450 RLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 490 (520)
Q Consensus 450 ~~~~p~~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~~ 490 (520)
+.++.+||++||++..+.| .++|+|+.||.++|+.|...
T Consensus 422 -~~~~~~~l~laGr~~~~~~-~~~d~a~~sg~~~a~~i~~~ 460 (479)
T PRK07208 422 -LLDHFPNLHLVGRNGMHRY-NNQDHSMLTAMLAVENIIAG 460 (479)
T ss_pred -HHHhcCCceeecccccccc-CChhHHHHHHHHHHHHHhcC
Confidence 3467799999999987777 59999999999999977665
No 21
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=2e-34 Score=291.02 Aligned_cols=427 Identities=18% Similarity=0.149 Sum_probs=260.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecC-CCCcccccccceecCCCCCCchHHHHHHcCCCe
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY-SFGFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (520)
.++++|+|||||++||++|+.|+++|++|+|+|+.+++||+++++. .+|+.+|.|.|++.+. +.++.++++++|++.
T Consensus 73 g~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~--~~~~~~ll~~LGl~~ 150 (569)
T PLN02487 73 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGC--YNNLFRLMKKVGADE 150 (569)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCC--cHHHHHHHHhcCCcc
Confidence 3557999999999999999999999999999999999999999885 5789999999999865 467999999999974
Q ss_pred eeecCCCcc-ccccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhcCcccccc--
Q 010001 105 YRTSGDNSV-LYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRFF-- 181 (520)
Q Consensus 105 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 181 (520)
......... +...+....... .....+... .. +..++. ....++.+.+...... ...+..
T Consensus 151 ~~~~~~~~~~~~~~~g~~~~~~--~~~p~~~pl-~~----~~~~l~---------~~~Ls~~dklr~~~~l-~~~~~~~a 213 (569)
T PLN02487 151 NLLVKDHTHTFVNKGGDVGELD--FRFPVGAPL-HG----IKAFLT---------TNQLEPYDKARNALAL-ATSPVVRA 213 (569)
T ss_pred cccccccceeEEecCCEEeeec--cCCCCCchh-hh----HHHHHc---------CCCCCHHHHHhhcccc-cccchhhh
Confidence 322111111 111110000000 000011110 00 000000 0001111111110000 000000
Q ss_pred -------ccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-hhhhcCCcccccccccCccccc----c-C
Q 010001 182 -------EHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEELL----P-G 248 (520)
Q Consensus 182 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~-~ 248 (520)
....+.++..++.+.+. +.+.++++++.++.++ ...++.+++++++..+...... . +
T Consensus 214 l~~~~~~~~~~~~~d~~sv~~~l~----------r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~ 283 (569)
T PLN02487 214 LVDPDGAMRDIRDLDDISFSDWFT----------SHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATKTEA 283 (569)
T ss_pred ccCccccccccccccCCcHHHHHH----------HhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCc
Confidence 00001122223333222 4455566888888887 6688899999987765522111 1 1
Q ss_pred C-ccccccChHH-HHHHHh-----ccCCeecCceeEEEEEeC--Ce----EEEEE---cCCcEEEcCEEEEecChhhhhc
Q 010001 249 G-HGLMVRGYLP-VINTLA-----KGLDIRLGHRVTKITRHY--IG----VKVTV---EGGKTFVADAVVVAVPLGVLKA 312 (520)
Q Consensus 249 g-~~~~~~G~~~-l~~~L~-----~gv~i~~~~~V~~I~~~~--~~----v~V~~---~~g~~~~ad~VI~a~p~~~l~~ 312 (520)
+ ..++.+|+.. +++.++ .|++|+++++|++|+.++ ++ ..|++ .+++++.+|.||+|+|++.+.+
T Consensus 284 ~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~ 363 (569)
T PLN02487 284 SLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKR 363 (569)
T ss_pred ceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHH
Confidence 1 4567888774 666553 499999999999999873 22 24555 3344688999999999999887
Q ss_pred CcccccCCCchHHHHHHhhcCCcceeEEEEEeCCCcccCC---------ccceee-----cCCCCceeEeee-----cc-
Q 010001 313 RTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV---------EFLGVV-----SDTSYGCSYFLN-----LH- 372 (520)
Q Consensus 313 l~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~---------~~~g~~-----~~~~~~~~~~~~-----~~- 372 (520)
++....+..+ ..+.+..+...++..|+++||.++-... ++.|.. .+..+.+ +.+ ..
T Consensus 364 Llp~~~~~~~--~~~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f--~~di~l~~~~~ 439 (569)
T PLN02487 364 LLPEQWREYE--FFDNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSC--FADLALTSPED 439 (569)
T ss_pred hCCchhhccH--HHhHHhcCCCeeEEEEEEEecccccccccccccccccccccccccccccCCCcce--EeeeecCCHHH
Confidence 6544322222 2566788888899999999997653211 122221 1111211 111 00
Q ss_pred --CCCCceEEEEEechhhhHHHhcCCHHHHHHHHHHHHHHHCCCCCC--CcEEEeccCCCCCCCCccccCCCCCCChhHH
Q 010001 373 --KATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASS--PIQYLVSHWGTDANSLGSYSYDTVGKSHDLY 448 (520)
Q Consensus 373 --~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~~~~~~--~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~ 448 (520)
.......+-+++.. +.++..++++++++.++++|.+++|.... +.+..+.+.....+ . ..+|. ...+
T Consensus 440 ~~~~~~g~~l~~vis~--a~~~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~-----~-~~pg~-~~~R 510 (569)
T PLN02487 440 YYKEGEGSLIQAVLTP--GDPYMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLY-----R-EAPGM-DPFR 510 (569)
T ss_pred HcccCCceEEEEEEcC--CccccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCcee-----c-cCCCc-cccC
Confidence 01112344444432 35678899999999999999999988644 33434444432111 1 12443 2566
Q ss_pred HHhcCCCCcEEEeeccccCcCCccchHHHHHHHHHHHHHHHHHHHH
Q 010001 449 ERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 494 (520)
Q Consensus 449 ~~~~~p~~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~~l~~~ 494 (520)
|..+||++|||+||||+..+|+.+||||+.||.+||+.|+++...-
T Consensus 511 P~~~T~~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~~~~ 556 (569)
T PLN02487 511 PDQKTPISNFFLAGSYTKQDYIDSMEGATLSGRQAAAYICEAGEEL 556 (569)
T ss_pred CCCCCCCCCEEEeCcccccCCcchHHHHHHHHHHHHHHHHHHhhhh
Confidence 8899999999999999999999999999999999999998876433
No 22
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=100.00 E-value=9.4e-34 Score=285.08 Aligned_cols=418 Identities=19% Similarity=0.198 Sum_probs=244.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeec-CCCCcccccccceecCCCCCCchHHHHHHcCCCeeeec
Q 010001 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTD-YSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS 108 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~-~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~ 108 (520)
+|+|||||++||+||+.|+++|++|+|+|+++++||++++. ..+|+.+|.|+|++.+. +.++.++++++|+......
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~--~~~~~~~~~~lg~~~~~~~ 78 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGC--YANLFRLMKKVGAEDNLLL 78 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCc--hHHHHHHHHHcCCcccccc
Confidence 58999999999999999999999999999999999999996 46799999999999854 4679999999998632211
Q ss_pred CC-CccccccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhc--Ccccc-cc--c
Q 010001 109 GD-NSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDR--RPELR-FF--E 182 (520)
Q Consensus 109 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~--~ 182 (520)
.. ...+...+.....+........|......+.+ ....++.+.+...... .+... +. .
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~----------------~~~ls~~dklr~~~~~~~~~~~~~~~~~~ 142 (474)
T TIGR02732 79 KEHTHTFVNKGGDIGELDFRFATGAPFNGLKAFFT----------------TSQLKWVDKLRNALALGTSPIVRGLVDYD 142 (474)
T ss_pred ccceeEEEcCCCcccccccCCCCCCchhhhHHHhc----------------CCCCCHHHHHHHHHHhhhhHHHhhccccc
Confidence 11 11111111000000000001111111000000 0001111111000000 00000 00 0
Q ss_pred ---cccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-hhhhcCCcccccccccCc--cccc--cC--Cccc
Q 010001 183 ---HVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDK--EELL--PG--GHGL 252 (520)
Q Consensus 183 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~--~~--g~~~ 252 (520)
......++.+ ..++++ +.+.++.+++.++.++ .+.++.+++.+|+..+.. ..+. .. ...+
T Consensus 143 ~~~~~~~~~~~~t----~~~~l~------~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~ 212 (474)
T TIGR02732 143 GAMKTIRDLDKIS----FAEWFL------SHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAAKTEASKLRM 212 (474)
T ss_pred hhhhhhhhhcccc----HHHHHH------HcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCcceeee
Confidence 0000011112 222222 5555666788888886 567788888888765432 0100 11 1223
Q ss_pred cccC-----hHHHHHHHh-ccCCeecCceeEEEEEeC--Ce---E-EEEEcCC---cEEEcCEEEEecChhhhhcCcccc
Q 010001 253 MVRG-----YLPVINTLA-KGLDIRLGHRVTKITRHY--IG---V-KVTVEGG---KTFVADAVVVAVPLGVLKARTIKF 317 (520)
Q Consensus 253 ~~~G-----~~~l~~~L~-~gv~i~~~~~V~~I~~~~--~~---v-~V~~~~g---~~~~ad~VI~a~p~~~l~~l~~~~ 317 (520)
+.++ .+++++.|+ .|++|+++++|++|+.++ ++ + .|.+.+| +++.+|+||+|+|++.+.+++...
T Consensus 213 ~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~ 292 (474)
T TIGR02732 213 LKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQE 292 (474)
T ss_pred ecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChh
Confidence 4444 355777776 489999999999999864 22 3 3445444 468999999999999988765432
Q ss_pred cCCCchHHHHHHhhcCCcceeEEEEEeCCCcccCCc---------ccee-----ecCCCCceeEeee-----c--cCCCC
Q 010001 318 EPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVE---------FLGV-----VSDTSYGCSYFLN-----L--HKATG 376 (520)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~---------~~g~-----~~~~~~~~~~~~~-----~--~~~~~ 376 (520)
.+. ......+..+.+.++..|++.|+++.-.... ..+. +.+..+.+ +.+ . ..+.+
T Consensus 293 ~~~--~~~~~~l~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 368 (474)
T TIGR02732 293 WRQ--FEEFDNIYKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSC--FADLALTSPDDYYKEG 368 (474)
T ss_pred hhc--CHHHhhHhcCCCCCeEEEEEEeccccccccchhhhhcccccccccccccccCcccee--eehhhccCHHHHhccC
Confidence 111 1245567788888999999999865432110 0111 01111111 111 0 00122
Q ss_pred c-eEEEEEechhhhHHHhcCCHHHHHHHHHHHHHHHCCCCCC--CcEEEeccCCCCCCCCccccCCCCCCChhHHHHhcC
Q 010001 377 H-CVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASS--PIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRI 453 (520)
Q Consensus 377 ~-~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~~~~~~--~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~ 453 (520)
. .++.+++.. +.++..++++++.+.++++|++++|...+ +.+..+.+.....+ . ..||. ...+|..++
T Consensus 369 ~~~~l~~~~~~--~~~~~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~-----~-~~pg~-~~~~P~~~t 439 (474)
T TIGR02732 369 QGSLLQCVLTP--GDPWMPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLY-----R-EAPGM-DPFRPDQKT 439 (474)
T ss_pred CCeEEEEEEeC--hhhhcCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCcee-----c-cCCCC-cccCCCCCC
Confidence 2 223333322 34677899999999999999999997543 33333444332111 1 12444 356688899
Q ss_pred CCCcEEEeeccccCcCCccchHHHHHHHHHHHHHH
Q 010001 454 PVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 488 (520)
Q Consensus 454 p~~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~ 488 (520)
|++|||+||||+..+|+.+||||+.||.+||+.|+
T Consensus 440 ~~~~l~lAGD~t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 440 PISNFFLAGSYTQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred CCCCeEEeccccccCchHHHhHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999763
No 23
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=100.00 E-value=2.9e-33 Score=281.71 Aligned_cols=388 Identities=23% Similarity=0.260 Sum_probs=244.5
Q ss_pred HHHHHHHhCCCcEEEEeccCCCCceeeecCCCCcc--cccccceecCCCCCCchHHHHHHcCCCeeeecCC-CccccccC
Q 010001 42 AAARALHDASFKVVLLESRDRVGGRVHTDYSFGFP--VDLGASWLHGVCQENPLAPVISRLGLPLYRTSGD-NSVLYDHD 118 (520)
Q Consensus 42 saA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~--~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~~~-~~~~~~~~ 118 (520)
+||++|+++|++|+|+|+++++||+++|...+|+. +|.|+|++++ .+.++.+++++||++....... ...++..+
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~--~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~ 78 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLG--AYTNLLALLRRIGAEPRLQGPRLPLPFYDPG 78 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEc--ccHHHHHHHHHhCCchhhhcccCCcceecCC
Confidence 58999999999999999999999999999888654 9999999974 3567999999999975432111 11111111
Q ss_pred ccceeeecCCCCccCHHHHHHHH-------HHHHHHHHHHHHhhh---cCCCCCcHHHHHHHHHhcCccccccccccCCC
Q 010001 119 LESYALFDMDGNQVPQELVTKVG-------EAFESILKETDKVRE---EHDEDMSIQRAISIVFDRRPELRFFEHVSSSL 188 (520)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (520)
...+... ......|......+. ....++......+.. ....+.++.+++
T Consensus 79 ~~~~~~~-~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l-------------------- 137 (419)
T TIGR03467 79 GRLSRLR-LSRLPAPLHLARGLLRAPGLSWADKLALARALLALRRTRFRALDDTTVGDWL-------------------- 137 (419)
T ss_pred CCceeec-CCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhcCccccCCCCHHHHH--------------------
Confidence 1110111 001111111000000 000011111111100 011222333332
Q ss_pred CcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-hhhhcCCcccccccccCccc---cc----cCCccccccChHHH
Q 010001 189 PGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEE---LL----PGGHGLMVRGYLPV 260 (520)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~----~~g~~~~~~G~~~l 260 (520)
. +..+++.+.+.++.++ ...++.+++++++..+.... .. ..+..++.+|+..+
T Consensus 138 ---------~----------~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~ 198 (419)
T TIGR03467 138 ---------Q----------AAGQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSEL 198 (419)
T ss_pred ---------H----------HcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHH
Confidence 1 3345666777666665 55677777777765443211 11 11355778888765
Q ss_pred HHH-Hh-----ccCCeecCceeEEEEEeCCeEEEEE-cCCcEEEcCEEEEecChhhhhcCcccccCCCchHHHHHHhhcC
Q 010001 261 INT-LA-----KGLDIRLGHRVTKITRHYIGVKVTV-EGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLG 333 (520)
Q Consensus 261 ~~~-L~-----~gv~i~~~~~V~~I~~~~~~v~V~~-~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~l~~~~~~~~~~~~ 333 (520)
+.. |+ .|++|++|++|++|+.+++++.+.. .+|+++.||+||+|+|++.+..++.. +...+.+..+.
T Consensus 199 ~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~------~~~~~~l~~~~ 272 (419)
T TIGR03467 199 FPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRHAASLLPG------EDLGALLTALG 272 (419)
T ss_pred HHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHHHHHhCCC------chHHHHHhhcC
Confidence 533 43 4889999999999999988865433 46778999999999999998765321 13456678889
Q ss_pred CcceeEEEEEeCCCcccCCccceeecCCCCceeEeeeccCCCCceEEEEEechhhhHHHhcCCHHHHHHHHHHHHHHHCC
Q 010001 334 VGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP 413 (520)
Q Consensus 334 ~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~~ 413 (520)
+.+..++++.|++++|.+.++.+.+... ...++......+....+..++.+ ...+...+++++.+.++++|++++|
T Consensus 273 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~~l~~l~~~~~ 348 (419)
T TIGR03467 273 YSPITTVHLRLDRAVRLPAPMVGLVGGL--AQWLFDRGQLAGEPGYLAVVISA--ARDLVDLPREELADRIVAELRRAFP 348 (419)
T ss_pred CcceEEEEEEeCCCcCCCCCeeeecCCc--eeEEEECCcCCCCCCEEEEEEec--chhhccCCHHHHHHHHHHHHHHhcC
Confidence 9999999999999998665555554322 12222222222223344444433 4567788999999999999999998
Q ss_pred CC--CCCcEEEeccCCCCCCCCccccCCCCCCChhHHHHhcCCCCcEEEeeccccCcCCccchHHHHHHHHHHHHHH
Q 010001 414 DA--SSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 488 (520)
Q Consensus 414 ~~--~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~ 488 (520)
.. ..+....+.+|....+ .+ .++. ...+|.+.+|.+|||+|||++..++++++|||+.||.+||++|+
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~-----~~-~~g~-~~~~~~~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 349 RVAGAKPLWARVIKEKRATF-----AA-TPGL-NRLRPGARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred ccccCCccceEEEEccCCcc-----cc-CCcc-cccCCCCCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHh
Confidence 65 3345556666654222 11 1332 23456677889999999999998888899999999999999876
No 24
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=100.00 E-value=2.8e-32 Score=278.45 Aligned_cols=438 Identities=20% Similarity=0.195 Sum_probs=241.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcCCCeeee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRT 107 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~ 107 (520)
..||+|||||++||+||..|+++|++|+|+|+++++||++++++.+|+.||.|+|++.++.....+..+++++|++....
T Consensus 1 ~~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~~~ 80 (492)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLEPGGIHARIFRELGIPLPEA 80 (492)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEeecceEEEecCcCCHHHHHHHHcCCCCccc
Confidence 36999999999999999999999999999999999999999999999999999999876544556788899999874211
Q ss_pred ---cCCCccccccCccceeeecCCCCccCHHHHHHHHHHH---HHHHHHHHHhhh-------cCC--CCCcHHHHHHHHH
Q 010001 108 ---SGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAF---ESILKETDKVRE-------EHD--EDMSIQRAISIVF 172 (520)
Q Consensus 108 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~--~~~~~~~~~~~~~ 172 (520)
.....+.+.++...+.+. .+ ......++.+.+ .+++....+... ... ......+......
T Consensus 81 ~~~d~~~~~~~~dg~~~~~~~-~d----~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (492)
T TIGR02733 81 KILDPACAVDLPDGSEPIPLW-HD----PDRWQKERERQFPGSERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVS 155 (492)
T ss_pred ccCCCCcEEEECCCceEeeee-cC----HHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHH
Confidence 111111111110000000 00 011111111111 001111110000 000 0001111110000
Q ss_pred hcCccccccccccCCCCcchhHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHhhhh-hhcCCccccccccc---Ccccccc
Q 010001 173 DRRPELRFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEG-LAHKVLQWYLCRMEG-WFAADAETISLKSW---DKEELLP 247 (520)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~ 247 (520)
...+... ....+ ....+.++++ +.. +.++.++.++..... +.+.++...+.... .......
T Consensus 156 ~~~~~~~----~~~~~----~~~s~~~~l~------~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (492)
T TIGR02733 156 ALRPDTL----LTGPL----SLLTVADLLR------LCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMAQAP 221 (492)
T ss_pred hcChhhh----hhhhh----hhhhHHHHHH------HhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhccccC
Confidence 0000000 00000 0112222221 211 344444444443333 22333434443321 1222233
Q ss_pred CCccccccChHHHHHHHhc-----cCCeecCceeEEEEEeCCeE-EEEEcCC-----cEEEcCEEEEecChhhhhcCccc
Q 010001 248 GGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGV-KVTVEGG-----KTFVADAVVVAVPLGVLKARTIK 316 (520)
Q Consensus 248 ~g~~~~~~G~~~l~~~L~~-----gv~i~~~~~V~~I~~~~~~v-~V~~~~g-----~~~~ad~VI~a~p~~~l~~l~~~ 316 (520)
.|..++.||++.++++|++ |++|+++++|++|..+++++ .|.+.+| +++.||+||+|+|+..+..++.
T Consensus 222 ~G~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~- 300 (492)
T TIGR02733 222 HGLWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLG- 300 (492)
T ss_pred CCceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcC-
Confidence 5667899999999999963 88999999999999988753 3444443 5789999999999998876542
Q ss_pred ccCCCchHHHHHHhhcCCcce-eEEEEEeCCCcccC--CccceeecCCCC--ceeE--eeeccCCCCceEEEEEechhh-
Q 010001 317 FEPRLPDWKEAAIDDLGVGIE-NKIIMHFDKVFWPN--VEFLGVVSDTSY--GCSY--FLNLHKATGHCVLVYMPAGQL- 388 (520)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~~-~~v~l~~~~~~~~~--~~~~g~~~~~~~--~~~~--~~~~~~~~~~~~l~~~~~~~~- 388 (520)
.+.+++...+.+..+++.+. ..+++.+++...+. ............ ..+. ..+...|+++.+++.....+.
T Consensus 301 -~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~ 379 (492)
T TIGR02733 301 -PLGLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDHQGSLFVSISQEGDGRAPQGEATLIASSFTDTN 379 (492)
T ss_pred -cccCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeeccCCCceEEEEeCCccccCCCCCceEEEEEcCCCHH
Confidence 25667667777877777553 46788887632211 111111111111 0011 011223556666543332211
Q ss_pred ------hHHHhcCCHHHHHHHHHHHHHHHCCCCCCCcEEEecc----CCCCCCC-Ccc-ccCC-CCCCChhHHHHhcCCC
Q 010001 389 ------ARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSH----WGTDANS-LGS-YSYD-TVGKSHDLYERLRIPV 455 (520)
Q Consensus 389 ------~~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~----w~~~~~~-~g~-~~~~-~~~~~~~~~~~~~~p~ 455 (520)
..+|.+. ++++.+.+++.|++.+|++.+.+...... |...... .|. |... ...+....++..++|+
T Consensus 380 ~~~~~~~~~y~~~-k~~~~~~il~~le~~~p~l~~~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i 458 (492)
T TIGR02733 380 DWSSLDEEDYTAK-KKQYTQTIIERLGHYFDLLEENWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPV 458 (492)
T ss_pred HHcCCCHHHHHHH-HHHHHHHHHHHHHHHCCCccccEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCC
Confidence 2234433 66789999999999999887654333211 2111111 121 1111 1222212223347899
Q ss_pred CcEEEeeccccCcCCccchHHHHHHHHHHHHHHH
Q 010001 456 DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 489 (520)
Q Consensus 456 ~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~ 489 (520)
+|||+||+++.++ +++.|++.||+.||+.|+.
T Consensus 459 ~gLyl~G~~~~pG--~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 459 KGLWLCGDSIHPG--EGTAGVSYSALMVVRQILA 490 (492)
T ss_pred CCeEEecCccCCC--CcHHHHHHHHHHHHHHHhh
Confidence 9999999998775 5899999999999998875
No 25
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=100.00 E-value=5.3e-32 Score=277.31 Aligned_cols=427 Identities=18% Similarity=0.164 Sum_probs=232.4
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcCCCe------
Q 010001 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL------ 104 (520)
Q Consensus 31 v~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~------ 104 (520)
|||||||++||+||.+|+++|++|+|+|+++++||+++|+..+|+.||.|++++.. ...+.++++++|.++
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~---~~~~~~l~~~lg~~l~~~l~~ 77 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITM---PEALEELFALAGRDLADYVEL 77 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCCeEEecCCeEEcc---ccHHHHHHHHcCCChhheEEE
Confidence 69999999999999999999999999999999999999999999999999998852 346788889988542
Q ss_pred eeecCCCccccccCccceeeecCCCCccCHHHHHHHH-------HHHHHHHHHHHHhhhc-----C-CCCCcHHHHHHHH
Q 010001 105 YRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVG-------EAFESILKETDKVREE-----H-DEDMSIQRAISIV 171 (520)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~ 171 (520)
.+......+.+.++. .+.+. .. .......+. +.+.+++......... . ....+..+.+...
T Consensus 78 ~~~~~~~~~~~~~g~-~~~~~-~~----~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (502)
T TIGR02734 78 VPLDPFYRLCWEDGS-QLDVD-ND----QEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRAD 151 (502)
T ss_pred EECCCceEEECCCCC-EEEec-CC----HHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhHh
Confidence 121111222221111 11110 00 011111111 1122222222221110 0 0000111111000
Q ss_pred HhcCccccccccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCcccccccccC-ccccccCCc
Q 010001 172 FDRRPELRFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWD-KEELLPGGH 250 (520)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~ 250 (520)
... ...... ...+.+++ .+.+.++.++.++.....+++.++...+..... ......+|.
T Consensus 152 ~~~---------~~~~~~----~~s~~~~~-------~~~~~~~~l~~~l~~~~~~~g~~p~~~~~~~~l~~~~~~~~g~ 211 (502)
T TIGR02734 152 LPQ---------LLALLA----WRSLYSKV-------ARFFSDERLRQAFSFHALFLGGNPFRTPSIYALISALEREWGV 211 (502)
T ss_pred hHh---------hhhccC----cCCHHHHH-------HhhcCCHHHHHHhcccceeeccCcccchHHHHHHHHHHhhceE
Confidence 000 000000 01111121 122333444444443333455555544432211 112235677
Q ss_pred cccccChHHHHHHHhc-----cCCeecCceeEEEEEeCCe-EEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCchH
Q 010001 251 GLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDW 324 (520)
Q Consensus 251 ~~~~~G~~~l~~~L~~-----gv~i~~~~~V~~I~~~~~~-v~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~l~~~ 324 (520)
.++.+|+..++++|.+ |++|+++++|++|..++++ +.|++.+|+++.||.||+|+++..+...++. .+..+..
T Consensus 212 ~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~-~~~~~~~ 290 (502)
T TIGR02734 212 WFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLLP-NHPRRRY 290 (502)
T ss_pred EEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcC-ccccccc
Confidence 7889999999998853 8899999999999988877 5788899988999999999998766543331 1112223
Q ss_pred HHHHHhhcCCc-ceeEEEEEeCC--CcccCCccceeec------------------CCCCceeEe----eeccCCCCceE
Q 010001 325 KEAAIDDLGVG-IENKIIMHFDK--VFWPNVEFLGVVS------------------DTSYGCSYF----LNLHKATGHCV 379 (520)
Q Consensus 325 ~~~~~~~~~~~-~~~~v~l~~~~--~~~~~~~~~g~~~------------------~~~~~~~~~----~~~~~~~~~~~ 379 (520)
..+.+..+.++ ....+++.++. .-++.......+. .++...... .+...|+++..
T Consensus 291 ~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~ 370 (502)
T TIGR02734 291 PAARLSRKRPSPSLFVLYFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCEN 370 (502)
T ss_pred cccccccCCcCCeeeEEEEeeccccCcCCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCcc
Confidence 33445555543 44566777762 1123211111110 011110001 11123455554
Q ss_pred EEEEechhh----hHHHhcCCHHHHHHHHHHHHHHH-CCCCCCCcEEEecc----CCCCCCC-Ccc-ccCC-CCCCChhH
Q 010001 380 LVYMPAGQL----ARDIEKMSDEAAANFAFTQLKKI-LPDASSPIQYLVSH----WGTDANS-LGS-YSYD-TVGKSHDL 447 (520)
Q Consensus 380 l~~~~~~~~----~~~~~~~~~ee~~~~~~~~L~~~-~~~~~~~~~~~~~~----w~~~~~~-~g~-~~~~-~~~~~~~~ 447 (520)
+.+++.... ...|... ++++.+.+++.|++. +|++++.+...... |...... .|. |... ...+....
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~-k~~~~~~il~~l~~~~~p~l~~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~ 449 (502)
T TIGR02734 371 LYVLAPVPHLGTADVDWSVE-GPRYRDRILAYLEERAIPGLRDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWF 449 (502)
T ss_pred EEEEEeCCCCCCCCCCcHHH-HHHHHHHHHHHHHHhcCCChhHheEEEEEcCHHHHHHhcCCCCccccchhhchhhcccC
Confidence 443332221 1224333 677999999999998 89887654333211 1111111 121 1111 11222223
Q ss_pred HHH-hcCCCCcEEEeeccccCcCCccchHHHHHHHHHHHHHHHH
Q 010001 448 YER-LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 490 (520)
Q Consensus 448 ~~~-~~~p~~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~~ 490 (520)
+|. .+++++|||+||+++.++ +++.+|+.||+.||+.|+..
T Consensus 450 rp~~~~t~i~gLyl~G~~~~pG--~Gv~g~~~sg~~~a~~il~~ 491 (502)
T TIGR02734 450 RPHNRDRKIDNLYLVGAGTHPG--AGVPGVLGSAKATAKLMLGD 491 (502)
T ss_pred CCCCCCCCCCCEEEeCCCCCCC--CCHHHHHHHHHHHHHHHHhh
Confidence 342 467899999999998775 58999999999999988764
No 26
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=100.00 E-value=1.9e-30 Score=264.35 Aligned_cols=435 Identities=18% Similarity=0.169 Sum_probs=233.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCCcccccccceecCCCC---CCchHHHHHHcCCCee
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQ---ENPLAPVISRLGLPLY 105 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~---~~~~~~l~~~lg~~~~ 105 (520)
+||+|||||++||+||.+|+++|++|+|+||++.+||+++++..+|+.||.|++.+.++.. .+.+.+++..++..+.
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKLE 80 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCEEEEecchhheecCCcccccHHHHHHHHcCCccc
Confidence 6999999999999999999999999999999999999999999999999999998776532 1235667777765432
Q ss_pred eecCCC--ccccccCccceeeecCCCCccCHHHHHHHH-------HHHHHHHHHHHHhhhc---C-CCC-CcHHHHHHHH
Q 010001 106 RTSGDN--SVLYDHDLESYALFDMDGNQVPQELVTKVG-------EAFESILKETDKVREE---H-DED-MSIQRAISIV 171 (520)
Q Consensus 106 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~---~-~~~-~~~~~~~~~~ 171 (520)
...... .+.+.++. ...+. .+ .......+. +.+.+++....+.... . ... ..........
T Consensus 81 ~~~~~~~~~~~~~~g~-~~~~~-~d----~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (493)
T TIGR02730 81 TIPDPVQIHYHLPNGL-NVKVH-RE----YDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVF 154 (493)
T ss_pred ccCCCccEEEECCCCe-eEeee-cC----HHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHH
Confidence 221111 11111110 11110 00 011111111 1122222222211100 0 000 0000000000
Q ss_pred HhcCcc--ccccccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCC-cccccccccC--ccccc
Q 010001 172 FDRRPE--LRFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRMEGWFAAD-AETISLKSWD--KEELL 246 (520)
Q Consensus 172 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~ 246 (520)
+ ..+. ..+.. .....+.+++ .+.+.++.++.++......++.. ....+..... .....
T Consensus 155 ~-~~~~~~~~~~~---------~~~~s~~~~~-------~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~~~~ 217 (493)
T TIGR02730 155 F-KHPLACLGLAK---------YLPQNAGDIA-------RRYIRDPGLLKFIDIECFCWSVVPADQTPMINAGMVFSDRH 217 (493)
T ss_pred h-hchhhhhHHHH---------HhhccHHHHH-------HHhcCCHHHHHHHHHHHHhccCCCcccchhhhHHHhhcccc
Confidence 0 0000 00000 0001111111 22233334444444333333322 2333222111 11123
Q ss_pred cCCccccccChHHHHHHHh-----ccCCeecCceeEEEEEeCCe-EEEEEcCCcEEEcCEEEEecChhhhhcCcccccCC
Q 010001 247 PGGHGLMVRGYLPVINTLA-----KGLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPR 320 (520)
Q Consensus 247 ~~g~~~~~~G~~~l~~~L~-----~gv~i~~~~~V~~I~~~~~~-v~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~ 320 (520)
.+|..++.+|+..++++|. .|++|+++++|++|..++++ +.|++.+|+++.+|.||+|++++.+...++. ...
T Consensus 218 ~~g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~-~~~ 296 (493)
T TIGR02730 218 YGGINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLK-AEN 296 (493)
T ss_pred cceEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCC-ccc
Confidence 5677889999999988885 38899999999999988776 4788889988999999999977655432221 122
Q ss_pred CchHHHHHHhhcCCc-ceeEEEEEeCCCcccCCcc-ceeecCC-----CCceeEe-------eeccCCCCceEEEEEech
Q 010001 321 LPDWKEAAIDDLGVG-IENKIIMHFDKVFWPNVEF-LGVVSDT-----SYGCSYF-------LNLHKATGHCVLVYMPAG 386 (520)
Q Consensus 321 l~~~~~~~~~~~~~~-~~~~v~l~~~~~~~~~~~~-~g~~~~~-----~~~~~~~-------~~~~~~~~~~~l~~~~~~ 386 (520)
++....+.++++..+ ....+++.++....+.... ...+..+ ......+ .+...|+++.++.+++..
T Consensus 297 ~~~~~~~~~~~~~~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~ 376 (493)
T TIGR02730 297 LPKKEKNWQRNYVKSPSFLSLHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPS 376 (493)
T ss_pred cchhhHHHHhhccCCCceEEEEEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCC
Confidence 333333444555543 3567888887644332110 0111000 0001111 111235566666655542
Q ss_pred hhh-------HHHhcCCHHHHHHHHHHHHHHHCCCCCCCcEEEecc----CCCC-CCCCccccCCCCC-CChhHH-HHhc
Q 010001 387 QLA-------RDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSH----WGTD-ANSLGSYSYDTVG-KSHDLY-ERLR 452 (520)
Q Consensus 387 ~~~-------~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~----w~~~-~~~~g~~~~~~~~-~~~~~~-~~~~ 452 (520)
... .+|... ++++.+.+++.|++++|++++.+...... |... ....|.|...... +....+ |..+
T Consensus 377 ~~~~w~~~~~~~y~~~-k~~~~~~il~~l~~~~p~l~~~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~ 455 (493)
T TIGR02730 377 SMEDWQGLSPKDYEAK-KEADAERIIDRLEKIFPGLDSAIDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNR 455 (493)
T ss_pred ChhhccCCCcHHHHHH-HHHHHHHHHHHHHHHCCChhhcEEEEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCC
Confidence 221 134323 67789999999999999877654333311 2111 1112222110000 000111 3467
Q ss_pred CCCCcEEEeeccccCcCCccchHHHHHHHHHHHHHHHH
Q 010001 453 IPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 490 (520)
Q Consensus 453 ~p~~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~~ 490 (520)
++++|||+||+++.++ +++.+|+.||+.||++|+..
T Consensus 456 t~i~gLyl~G~~~~pG--~Gv~g~~~sG~~~a~~i~~~ 491 (493)
T TIGR02730 456 TAIPGLYCVGDSCFPG--QGLNAVAFSGFACAHRVAAD 491 (493)
T ss_pred CCCCCeEEecCcCCCC--CCHHHHHHHHHHHHHHHHhh
Confidence 8999999999998775 58999999999999998764
No 27
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.97 E-value=4.1e-31 Score=228.95 Aligned_cols=325 Identities=20% Similarity=0.190 Sum_probs=227.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcCCCeeeec
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS 108 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~ 108 (520)
.+|+||||||+||+||+.|+.+|..|+||||+.-+|||+.|.+.+|-.||+|+.+|. ..++.+.++++.+.-+-.-.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk--~~~~~F~~~Ve~~~~~glV~- 78 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFK--PRDELFLRAVEALRDDGLVD- 78 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeec--CCchHHHHHHHHHHhCCcee-
Confidence 479999999999999999999999999999999999999999999999999999986 34566677766654430000
Q ss_pred CCCccccccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhcCccccccccccCCC
Q 010001 109 GDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRFFEHVSSSL 188 (520)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (520)
.+......+. ..+
T Consensus 79 -----~W~~~~~~~~---~~~----------------------------------------------------------- 91 (331)
T COG3380 79 -----VWTPAVWTFT---GDG----------------------------------------------------------- 91 (331)
T ss_pred -----eccccccccc---cCC-----------------------------------------------------------
Confidence 0000000000 000
Q ss_pred CcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCcccccccccCccccccCCccccccChHHHHHHHhccC
Q 010001 189 PGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGL 268 (520)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~l~~~L~~gv 268 (520)
.++.. ..-.+.-.-||.++.+.|+...
T Consensus 92 -----------------------------------------~~~~~------------d~~pyvg~pgmsalak~LAtdL 118 (331)
T COG3380 92 -----------------------------------------SPPRG------------DEDPYVGEPGMSALAKFLATDL 118 (331)
T ss_pred -----------------------------------------CCCCC------------CCCccccCcchHHHHHHHhccc
Confidence 00000 0000122457888999999999
Q ss_pred CeecCceeEEEEEeCCeEEEEEcCCc-EEEcCEEEEecChhhhhcCcccccCCCchHHHHHHhhcCCcceeEEEEEeCCC
Q 010001 269 DIRLGHRVTKITRHYIGVKVTVEGGK-TFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKV 347 (520)
Q Consensus 269 ~i~~~~~V~~I~~~~~~v~V~~~~g~-~~~ad~VI~a~p~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~ 347 (520)
+|.++++|++|...++.|++.+++|. ...+|.||+|+|.+++..|+-.....+|...+..+..+.|.+...+.+.|..+
T Consensus 119 ~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~ 198 (331)
T COG3380 119 TVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQP 198 (331)
T ss_pred hhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhcCCcc
Confidence 99999999999999999999997765 56899999999999887655433456888889999999999988888888765
Q ss_pred cccCCccceeecCCCCceeEeeeccC---CCCceEEEEEechhhhHHHhcCCHHHHHHHHHHHHHHHCC-CCCCCcEEEe
Q 010001 348 FWPNVEFLGVVSDTSYGCSYFLNLHK---ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP-DASSPIQYLV 423 (520)
Q Consensus 348 ~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~~-~~~~~~~~~~ 423 (520)
.-. ++.|...++....+.-.+..+ .+...++++....+++....+.++|..+..+-..-+.+.+ .+++|.....
T Consensus 199 l~~--P~~G~~vdg~~laWla~d~sK~g~~p~~~~~vvqasp~wSr~h~~~~~e~~i~~l~aA~~~~~~~~~~~p~~s~~ 276 (331)
T COG3380 199 LDR--PWPGNFVDGHPLAWLARDASKKGHVPDGEIWVVQASPDWSREHLDHPAEQVIVALRAAAQELDGDRLPEPDWSDA 276 (331)
T ss_pred CCC--CCCCcccCCCeeeeeeccccCCCCCCcCceEEEEeCchHHHHhhcCCHHHHHHHHHHhhhhccCCCCCcchHHHh
Confidence 532 233443333332222222111 2233477777888888888888888888666666666665 5778888888
Q ss_pred ccCCCCCCCCccccCCCCCCChhHHHHhcCCCCcEEEeeccccCcCCccchHHHHHHHHHHHHHHHHH
Q 010001 424 SHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 491 (520)
Q Consensus 424 ~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~~l 491 (520)
++|+. +.+.-....+ +-...+-.+||+|||+..+ |.+|||++||..+|++|++.|
T Consensus 277 H~WrY---A~P~~~~~~~-------~L~ad~~~~l~~cGDwc~G---grVEgA~LSGlAaA~~i~~~L 331 (331)
T COG3380 277 HRWRY---AIPNDAVAGP-------PLDADRELPLYACGDWCAG---GRVEGAVLSGLAAADHILNGL 331 (331)
T ss_pred hcccc---ccccccccCC-------ccccCCCCceeeecccccC---cchhHHHhccHHHHHHHHhcC
Confidence 99943 2222111111 0111344699999999887 799999999999999998753
No 28
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.96 E-value=3e-28 Score=218.26 Aligned_cols=281 Identities=20% Similarity=0.188 Sum_probs=192.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecC----CCCcccccccceecCCCCCCchHHHHHHcC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY----SFGFPVDLGASWLHGVCQENPLAPVISRLG 101 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~----~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg 101 (520)
.++.+|+|||+|+|||+|||.|+++ ++|++||+.+++||+++|.. -.|+.+|+|.+.+... .+.++..|++++|
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~-tYpnl~~Lf~~iG 83 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNER-TYPNLTRLFKTIG 83 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCC-CcchHHHHHHHcC
Confidence 4678999999999999999999975 79999999999999999973 3467899999988753 4788999999999
Q ss_pred CCeeeecCCCccccccCccceee-------ecCCCCccCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhc
Q 010001 102 LPLYRTSGDNSVLYDHDLESYAL-------FDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDR 174 (520)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (520)
.+......+..+-++.+...|.- +......+.+. +..++.+..++.+........
T Consensus 84 v~t~as~Msf~v~~d~gglEy~g~tgl~~L~aqk~n~l~pR--------f~~mlaeiLrf~r~~~~~~d~---------- 145 (447)
T COG2907 84 VDTKASFMSFSVSLDMGGLEYSGLTGLAGLLAQKRNLLRPR--------FPCMLAEILRFYRSDLAPSDN---------- 145 (447)
T ss_pred CCCcccceeEEEEecCCceeeccCCCccchhhccccccchh--------HHHHHHHHHHHhhhhccchhh----------
Confidence 99888777777777665433322 11222222222 333333333333211100000
Q ss_pred CccccccccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-hhhhcCCcccccccccCcccc--------
Q 010001 175 RPELRFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEEL-------- 245 (520)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------- 245 (520)
... ....+.++++ +++|++.+.+.++.|+ ...+..+..+++..-......
T Consensus 146 -----------~~~----~~~tl~~~L~------~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~nhGll 204 (447)
T COG2907 146 -----------AGQ----GDTTLAQYLK------QRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTDNHGLL 204 (447)
T ss_pred -----------hcC----CCccHHHHHH------hcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHhccCce
Confidence 000 1112333333 7888999998888887 445555544443222111101
Q ss_pred ---ccCCccccccChHHHHHHHhccCC--eecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCC
Q 010001 246 ---LPGGHGLMVRGYLPVINTLAKGLD--IRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPR 320 (520)
Q Consensus 246 ---~~~g~~~~~~G~~~l~~~L~~gv~--i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~ 320 (520)
-...+..+.||....+++|..++. |.++++|.+|.+-.+++.|...+|++-++|.||.||-+++...++.+-+
T Consensus 205 ~l~~rp~wrtV~ggS~~yvq~laa~~~~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~mL~e~s-- 282 (447)
T COG2907 205 YLPKRPTWRTVAGGSRAYVQRLAADIRGRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALALLDEPS-- 282 (447)
T ss_pred ecCCCCceeEcccchHHHHHHHhccccceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChHHHHHhcCCCC--
Confidence 122344677999999999998774 9999999999999999999888999999999999999988776654422
Q ss_pred CchHHHHHHhhcCCcceeEEEEEeCCCcccCC
Q 010001 321 LPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV 352 (520)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~ 352 (520)
|+ -++.+..+.|+. +.+.++-|..++|..
T Consensus 283 -p~-e~qll~a~~Ys~-n~aVlhtd~~lmPrR 311 (447)
T COG2907 283 -PE-ERQLLGALRYSA-NTAVLHTDASLMPRR 311 (447)
T ss_pred -HH-HHHHHHhhhhhh-ceeEEeecccccccc
Confidence 33 344788899854 456667777777764
No 29
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.96 E-value=7.9e-28 Score=221.87 Aligned_cols=409 Identities=18% Similarity=0.178 Sum_probs=258.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCc--EEEEeccCCCCceeee-cCCCCcccccccceecCCCCC-CchHHHHHHcC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFK--VVLLESRDRVGGRVHT-DYSFGFPVDLGASWLHGVCQE-NPLAPVISRLG 101 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~--V~vlE~~~~~GG~~~s-~~~~g~~~d~G~~~~~~~~~~-~~~~~l~~~lg 101 (520)
.+.++|+|||||+|||++||+|++++.+ |+|+|+.+|+||.++| ....|+.||.|+..+...... -.+..++++||
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLG 88 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLG 88 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcC
Confidence 4679999999999999999999999875 5669999999999999 445689999999988644321 24789999999
Q ss_pred CCe--eeecCCCccccccCccceeeecCCCCccCHHHHH--------HHHHHHHHHHHHHHHhh-hcCCCCCcHHHHHHH
Q 010001 102 LPL--YRTSGDNSVLYDHDLESYALFDMDGNQVPQELVT--------KVGEAFESILKETDKVR-EEHDEDMSIQRAISI 170 (520)
Q Consensus 102 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 170 (520)
++. .+...+..- ..+.+.........+|..... .....++.++.+..+.. .....+.++..++
T Consensus 89 l~~e~~~i~~~~pa----aknr~l~~~~~L~~vP~sl~~s~~~~l~p~~k~L~~a~l~e~fr~~~~~~~~dESV~sF~-- 162 (491)
T KOG1276|consen 89 LEDELQPIDISHPA----AKNRFLYVPGKLPTVPSSLVGSLKFSLQPFGKPLLEAFLRELFRKKVSDPSADESVESFA-- 162 (491)
T ss_pred ccceeeecCCCChh----hhheeeccCcccccCCcccccccccccCcccchhHHHHHhhhccccCCCCCccccHHHHH--
Confidence 963 222211110 000111111111222221111 11122333333333322 3445566766666
Q ss_pred HHhcCccccccccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-hhhhcCCcccccccccC-cccc---
Q 010001 171 VFDRRPELRFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWD-KEEL--- 245 (520)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~--- 245 (520)
+++|++++.+.+++++ .+.|+.+++.+|+.... ..+.
T Consensus 163 --------------------------------------~RrfG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eq 204 (491)
T KOG1276|consen 163 --------------------------------------RRRFGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQ 204 (491)
T ss_pred --------------------------------------HHhhhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHH
Confidence 6677888888888876 67888888888776422 1000
Q ss_pred ------------------------------c--cCCccccccChHHHHHHHhc-----cCCeecCceeEEEEEeC-CeEE
Q 010001 246 ------------------------------L--PGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHY-IGVK 287 (520)
Q Consensus 246 ------------------------------~--~~g~~~~~~G~~~l~~~L~~-----gv~i~~~~~V~~I~~~~-~~v~ 287 (520)
. .-+.+.+.+|++.+.+++.+ .+.|.++-++..+.... ++|.
T Consensus 205 k~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~ 284 (491)
T KOG1276|consen 205 KHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWS 284 (491)
T ss_pred hccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCce
Confidence 0 01233577899999988864 44677888887776554 4465
Q ss_pred EEEc--CCc-EEEcCEEEEecChhhhhcCcccccCCCchHHHHHHhhcCCcceeEEEEEeCCC-cccCCccceeecCC--
Q 010001 288 VTVE--GGK-TFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKV-FWPNVEFLGVVSDT-- 361 (520)
Q Consensus 288 V~~~--~g~-~~~ad~VI~a~p~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~-~~~~~~~~g~~~~~-- 361 (520)
+++. ++. .+..+++.+|.|...+..++. .+.+.....+..+.+.++..|.+.|.+. .-.+...+|.+++.
T Consensus 285 ~tl~~~~~~~~~~~~~~~~t~~~~k~a~ll~----~~~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~ 360 (491)
T KOG1276|consen 285 LTLVDHSGTQRVVVSYDAATLPAVKLAKLLR----GLQNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEP 360 (491)
T ss_pred eEeEcCCCceeeeccccccccchHHhhhhcc----ccchhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCC
Confidence 5544 443 445667777999888765443 3445557778889998988898888764 22333456776662
Q ss_pred C---CceeEeeec---cCCCCceEEEEEechhhhHHHh--cCCHHHHHHHHHHHHHHHCCCCCCCcEEEeccCCCCCCCC
Q 010001 362 S---YGCSYFLNL---HKATGHCVLVYMPAGQLARDIE--KMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSL 433 (520)
Q Consensus 362 ~---~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~--~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~w~~~~~~~ 433 (520)
. ......++. +...+...+++++.+.....+. ..+.||+++.+.+.|+++++.-.+|....++-| +.+.
T Consensus 361 ~~~~~~LG~ifdS~~Fp~~~~s~~vtvm~gg~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~~~P~~~~v~l~---~~ci 437 (491)
T KOG1276|consen 361 KNGFKTLGTIFDSMLFPDRSPSPKVTVMMGGGGSTNTSLAVPSPEELVNAVTSALQKMLGISNKPVSVNVHLW---KNCI 437 (491)
T ss_pred CCCCceeEEEeecccCCCCCCCceEEEEecccccccCcCCCCCHHHHHHHHHHHHHHHhCCCCCcccccceeh---hhcc
Confidence 1 112222222 1122233667776665555443 458999999999999999987667776667767 3355
Q ss_pred ccccCCCCCCChhHHHHhcCCC-CcEEEeeccccCcCCccchHHHHHHHHHHHHHH
Q 010001 434 GSYSYDTVGKSHDLYERLRIPV-DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 488 (520)
Q Consensus 434 g~~~~~~~~~~~~~~~~~~~p~-~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~ 488 (520)
++|...+..........+.+.- .+|+++|.+... -.+..+|.||.++|.++.
T Consensus 438 Pqy~vGh~~~le~a~~~l~~~~g~~l~l~G~~y~G---v~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 438 PQYTVGHDDVLEAAKSMLTDSPGLGLFLGGNHYGG---VSVGDCIESGRKTAVEVI 490 (491)
T ss_pred cceecchHHHHHHHHHHHHhCCCCceEeeccccCC---CChhHHHHhhHHHHHhhc
Confidence 6665333222223333333332 599999998776 378899999999998753
No 30
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=1.9e-26 Score=232.72 Aligned_cols=256 Identities=28% Similarity=0.253 Sum_probs=143.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcC-CCee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLG-LPLY 105 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg-~~~~ 105 (520)
+.+||||||||++||+||.+|+++|++|+|+||++++||++++...+|+.||+|++++... ....++.+++ ++..
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~~~----~~~~~~~~l~~l~~~ 77 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMP----DPGPLFRELGNLDAD 77 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccCcceeecC----chHHHHHHhccCccc
Confidence 4689999999999999999999999999999999999999999999999999999887533 2336666666 4321
Q ss_pred -----eecCCCccccccCccceeeecCCCCccCHHHHHHHH-------HHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHh
Q 010001 106 -----RTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVG-------EAFESILKETDKVREEHDEDMSIQRAISIVFD 173 (520)
Q Consensus 106 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (520)
+........+.++. ......+ .......+. +.+.++.....+.... ...
T Consensus 78 ~l~~~~~~~~~~~~~~~g~--~~~~~~d----~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-------------~~~ 138 (487)
T COG1233 78 GLDLLPPDPAYRVFLPDGD--AIDVYTD----LEATAELLESLEPGDGEALARYLRLLARLYEL-------------LAA 138 (487)
T ss_pred ceeeeccCCceeeecCCCC--EEEecCC----HHHHHHHHHhhCcccHHHHHHHHHHHHHhhHH-------------HHh
Confidence 11111112221110 0000000 011111111 1111111111110000 000
Q ss_pred cCccccccccccCCCCcchhHHHHHHHHHHH-----HHHhhhhhHHHHHHHHHHhhhhhhcCCccccc-ccccCcccccc
Q 010001 174 RRPELRFFEHVSSSLPGISLQRKLLDLLKLV-----LTCRLEGLAHKVLQWYLCRMEGWFAADAETIS-LKSWDKEELLP 247 (520)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 247 (520)
......+.... ........+..+.+.. ...... |..+.++..+.......+.++...+ +..........
T Consensus 139 ~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~-f~~~~~r~~~~~~~~~~~~~p~~~~a~~~~~~~~~~~ 213 (487)
T COG1233 139 LLLAPPRSELL----LVPDTPERLLRLLGFSLTSALDFFRGR-FGSELLRALLAYSAVYGGAPPSTPPALYLLLSHLGLS 213 (487)
T ss_pred hcCCCchhhhh----hccccHHHHHHHHHHhhhhHHHHHHHH-hcCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhccc
Confidence 00000000000 0000000111111111 111122 4544454444332111113333333 22333444567
Q ss_pred CCccccccChHHHHHHHhc-----cCCeecCceeEEEEEeCCe-EEEEEcCCcEEEcCEEEEecChhhh
Q 010001 248 GGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGVL 310 (520)
Q Consensus 248 ~g~~~~~~G~~~l~~~L~~-----gv~i~~~~~V~~I~~~~~~-v~V~~~~g~~~~ad~VI~a~p~~~l 310 (520)
+|..+++||++.++++|++ |++|+++++|++|..++++ +++.+.+|+.+.+|.||+++.+...
T Consensus 214 ~G~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~~~~ 282 (487)
T COG1233 214 GGVFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADPALL 282 (487)
T ss_pred CCeeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCchhhh
Confidence 7899999999999999964 9999999999999999986 7788888878899999999988443
No 31
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=2.1e-25 Score=214.49 Aligned_cols=428 Identities=19% Similarity=0.146 Sum_probs=222.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCC-CCcccccccceecCCCCCCchHHHHHHcCCCeeee
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS-FGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRT 107 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~ 107 (520)
++|+|+|||+|||+||++|+++|++|+|+|+++++||.++|.+. +|.+.|+|.|.|+++| .++..++++++.+..-.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y--~n~~~ll~~~~~~~~~~ 78 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCY--YNLLTLLKELPIEDRLQ 78 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhH--HHHHHHhhhCCchheee
Confidence 57999999999999999999999999999999999999999654 7899999999998764 78999999999873211
Q ss_pred cCC-Ccccccc-C-ccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhcCccccccccc
Q 010001 108 SGD-NSVLYDH-D-LESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRFFEHV 184 (520)
Q Consensus 108 ~~~-~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (520)
... ...+... + .....-+.......|....... +... .....+.+..++.-.....-.+..
T Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~-------l~~~---------~~~~~~~~~~~~~l~~~~~g~~~~ 142 (485)
T COG3349 79 LREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAF-------LRLP---------QLPRREKIRFVLRLGDAPIGADRS 142 (485)
T ss_pred hHhhhhhhcccCCCCCcccccccCCCCCcchhhhhh-------hhcc---------ccCHHHHhHHhhccccccchhHHH
Confidence 111 1111010 0 0000000000000111000000 0000 000000000000000000000111
Q ss_pred cCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhh-hhcCCcccccccccCccc----ccc-C-C-ccccccC
Q 010001 185 SSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRMEG-WFAADAETISLKSWDKEE----LLP-G-G-HGLMVRG 256 (520)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~-~-g-~~~~~~G 256 (520)
.+.|++.++.++++ +++-........+.++.. .-...++..+.+.+...+ ... + . ...+.++
T Consensus 143 ~~eld~~s~~d~l~----------~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~ 212 (485)
T COG3349 143 LRELDKISFADWLK----------EKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGS 212 (485)
T ss_pred HHHHhcccHHHHHH----------HhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCC
Confidence 12233444444443 223333333333333211 112233333332222100 001 1 1 1112222
Q ss_pred -----hHHHHHHHh-ccCCeecCceeEEEEEeC---C--eEEEEEcCCc---EEEcCEEEEecChhhhhcCcccccCCCc
Q 010001 257 -----YLPVINTLA-KGLDIRLGHRVTKITRHY---I--GVKVTVEGGK---TFVADAVVVAVPLGVLKARTIKFEPRLP 322 (520)
Q Consensus 257 -----~~~l~~~L~-~gv~i~~~~~V~~I~~~~---~--~v~V~~~~g~---~~~ad~VI~a~p~~~l~~l~~~~~~~l~ 322 (520)
...+.+.+. .|.+++.+.+|..|.... . .+++... +. ...++.|+.++..+.+.+.+..-.+.
T Consensus 213 ~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~~~~~~ps~W~~-- 289 (485)
T COG3349 213 PDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQRFKRDLPSEWPK-- 289 (485)
T ss_pred CcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeec-CcceEeeehhhhhcccccchHhhcCcccccc--
Confidence 234455554 688999999999998765 2 2344433 43 23456677777777766543321110
Q ss_pred hHHHHHHhhcCCcceeEEEEEeCCCc-ccCCc----ccee-ecCCCCceeEeeecc-------CCCCceEEEEEechhhh
Q 010001 323 DWKEAAIDDLGVGIENKIIMHFDKVF-WPNVE----FLGV-VSDTSYGCSYFLNLH-------KATGHCVLVYMPAGQLA 389 (520)
Q Consensus 323 ~~~~~~~~~~~~~~~~~v~l~~~~~~-~~~~~----~~g~-~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~ 389 (520)
....+.+..+...+..++.++|+... +.+.. +... ........+.+.+.. .+...+.+-... ...
T Consensus 290 ~~~f~~ly~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~--~~~ 367 (485)
T COG3349 290 WSNFDGLYGLRLVPVITLHLRFDGWVTELTDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKVL--APG 367 (485)
T ss_pred cccccccccccccceeEEEEeecCccccccccchhhhhhccccccccCCceeeeccccchhhccccchhhhhhhh--ccc
Confidence 22244567777788999999997432 22220 0000 000000011111110 011101110000 012
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHCCCCCCCc-EEEeccCCCCCCCCccccCCCCCCChhHHHHhcCCCCcEEEeeccccCc
Q 010001 390 RDIEKMSDEAAANFAFTQLKKILPDASSPI-QYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMS 468 (520)
Q Consensus 390 ~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~-~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~ 468 (520)
..|..-+++++.....+++...+|...+-. ...+.+... +.....++. ..++|...+|++|++++||++...
T Consensus 368 ~~~~~~~~~~~~a~~e~~~~~~vP~~~~a~~~~~~i~~~q------~~~~~~pgs-~~~rP~~~Tpv~N~~laGd~~~~~ 440 (485)
T COG3349 368 WPFLFESDEAIVATFEKELYELVPSLAEAKLKSSVLVNQQ------SLYGLAPGS-YHYRPEQKTPIPNLLLAGDYTKQP 440 (485)
T ss_pred ccccccchhhHHHHHHHHhhhcCCchhcccccccceeccc------cccccCCCc-cccCCCCCCCccchhhccceeecC
Confidence 334556788899999999998887643321 111222111 111222333 477888899999999999999988
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHhC
Q 010001 469 YPGSVHGAFSTGLMAAEDCRMRVLERYG 496 (520)
Q Consensus 469 ~~g~~egAi~SG~~aA~~i~~~l~~~~~ 496 (520)
+.++||+|..||.+||+.|++.+....+
T Consensus 441 ~~~smE~A~~sGl~AA~~v~~~~~~~~~ 468 (485)
T COG3349 441 YLGSMEGATLSGLLAANAILDNLGHHAP 468 (485)
T ss_pred CcCccchhhhhHHHHHHHHHHhhhhcCc
Confidence 8899999999999999999998776555
No 32
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.91 E-value=3.4e-22 Score=185.54 Aligned_cols=238 Identities=19% Similarity=0.169 Sum_probs=139.7
Q ss_pred ccccCCccccccChHHHHHHHhc-----cCCeecCceeEEEEEeCCe-EEEEEcCCcEEEcCEEEEecChhhhh-cCccc
Q 010001 244 ELLPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGVLK-ARTIK 316 (520)
Q Consensus 244 ~~~~~g~~~~~~G~~~l~~~L~~-----gv~i~~~~~V~~I~~~~~~-v~V~~~~g~~~~ad~VI~a~p~~~l~-~l~~~ 316 (520)
....+++.++.||+..+.+++++ |.+|.+++.|++|..+++. +.|..+||+++.++.||+++.++.+. .++.
T Consensus 250 d~~~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp- 328 (561)
T KOG4254|consen 250 DGHKGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLP- 328 (561)
T ss_pred cccCCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCC-
Confidence 33577889999999999999864 7799999999999999977 58999999999999999999877654 3222
Q ss_pred ccCCCchHHHHHHhhcCCc-cee----EEEEEeCCCc---ccCCcc--------------------ceeecCCCCc----
Q 010001 317 FEPRLPDWKEAAIDDLGVG-IEN----KIIMHFDKVF---WPNVEF--------------------LGVVSDTSYG---- 364 (520)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~-~~~----~v~l~~~~~~---~~~~~~--------------------~g~~~~~~~~---- 364 (520)
...||+.. .++++.+. +.. ..++.....- .|.... -|.-...+..
T Consensus 329 -~e~LPeef--~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~si 405 (561)
T KOG4254|consen 329 -GEALPEEF--VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSI 405 (561)
T ss_pred -CccCCchh--hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEec
Confidence 12355544 33344321 111 1233321100 010000 0000000000
Q ss_pred eeEeeeccCCCCceEEEEEechhhhHHHh-------cCCHHHHHHHHHHHHHHHCCCCCCCcEEEeccCC--------CC
Q 010001 365 CSYFLNLHKATGHCVLVYMPAGQLARDIE-------KMSDEAAANFAFTQLKKILPDASSPIQYLVSHWG--------TD 429 (520)
Q Consensus 365 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~w~--------~~ 429 (520)
.+..++.-.++++.++..++.+.. ..|+ +.-+++..+.+++.+++++|++...+..+..--. .+
T Consensus 406 PS~lDptlappg~Hvl~lf~~~t~-~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfsssv~~~dvgTP~t~qr~l~~~ 484 (561)
T KOG4254|consen 406 PSSLDPTLAPPGKHVLHLFTQYTP-EEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSSSVESYDVGTPPTHQRFLGRP 484 (561)
T ss_pred ccccCCCcCCCCceEEEEeccCCc-cccccCCcccchHHHHHHHHHHHHHHHHHcCCccceEEEEecCCCchhhHHhcCC
Confidence 111122223566777776665443 2333 3346778999999999999998776544332211 01
Q ss_pred -CCCCc-cccCC--CCCCChhHHHHhcCCCCcEEEeeccccCcCCccchHHHHHHHHHHHHHHHH
Q 010001 430 -ANSLG-SYSYD--TVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 490 (520)
Q Consensus 430 -~~~~g-~~~~~--~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~~ 490 (520)
.+..+ +...+ ....+...+..+++|+++||+||+.+.++ |++-+|- |..+|...+..
T Consensus 485 ~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPG--gGV~a~a--G~~~A~~a~~~ 545 (561)
T KOG4254|consen 485 GGNIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPG--GGVMAAA--GRLAAHSAILD 545 (561)
T ss_pred CCcccCcccccccccccCCccccccCCCCCCceEEecCCCCCC--CCccccc--hhHHHHHHhhh
Confidence 11111 11111 12222333445689999999999998886 5565543 88888866654
No 33
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.83 E-value=1.3e-19 Score=174.35 Aligned_cols=234 Identities=16% Similarity=0.164 Sum_probs=136.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCCcc-cccccceecCCCCCCchHHHHHHcC-CCee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLG-LPLY 105 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~-~d~G~~~~~~~~~~~~~~~l~~~lg-~~~~ 105 (520)
++||+|||||++||++|+.|++.|.+|+|+|+++.+||.|.+...+|.. .+.|+|+++. ....+.+++..+. ....
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t--~~~~v~~~~~~~~~~~~~ 78 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFHT--NNQYVWDYISPFFELNNY 78 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCCceEEeecceeEec--CcHHHHHHHHhhccccce
Confidence 3799999999999999999999999999999999999999987666654 4889999873 3455666666542 2211
Q ss_pred eecCCCccccccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhcCcccccccccc
Q 010001 106 RTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRFFEHVS 185 (520)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (520)
.......+.+....+++.......+.. ..........+........... ...+.++
T Consensus 79 --~~~~~~~~~g~~~~~P~~~~~i~~l~~---~~~~~~~~~~l~~~~~~~~~~~-~~~~~e~------------------ 134 (377)
T TIGR00031 79 --QHRVLALYNNLDLTLPFNFNQFRKLLG---VKDAQELQNFFNAQFKYGDHVP-LEELQEI------------------ 134 (377)
T ss_pred --eEEEEEEECCeEEccCCCHHHHHHhcc---cchHHHHHHHHHHHhhcccCCC-CCCHHHH------------------
Confidence 111112222221111110000000000 0001111111111000000000 0111111
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-hhhhcCCcccccccccC--------ccccccC-Ccccccc
Q 010001 186 SSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWD--------KEELLPG-GHGLMVR 255 (520)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~-g~~~~~~ 255 (520)
.... ...+++.+.+.++.+. ...++.++.+++..+.. ...++.+ -..+|++
T Consensus 135 -----------~d~~--------~~~~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~ 195 (377)
T TIGR00031 135 -----------ADPD--------IQLLYQFLYQKVYKPYTVKQWGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKG 195 (377)
T ss_pred -----------HHHH--------HHHHHHHHHHHhccccCceeeCCChHHCCHHHeEecceEecCCCCcccccccccccc
Confidence 1111 3356777888777776 55778888887766433 1112222 2457899
Q ss_pred ChHHHHHHHhc--cCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhh
Q 010001 256 GYLPVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 310 (520)
Q Consensus 256 G~~~l~~~L~~--gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l 310 (520)
|+.+++++|.+ +++|++|+.+..++.+++++.+.. + .+. +.||.|.|++.+
T Consensus 196 Gyt~~~~~ml~~~~i~v~l~~~~~~~~~~~~~~~~~~--~-~~~-~~vi~Tg~id~~ 248 (377)
T TIGR00031 196 GYTKLFEKMLDHPLIDVKLNCHINLLKDKDSQLHFAN--K-AIR-KPVIYTGLIDQL 248 (377)
T ss_pred cHHHHHHHHHhcCCCEEEeCCccceeeccccceeecc--c-ccc-CcEEEecCchHH
Confidence 99999999985 599999998888886655554432 2 333 889999998875
No 34
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.79 E-value=2.5e-17 Score=163.61 Aligned_cols=72 Identities=22% Similarity=0.270 Sum_probs=60.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhC----CCcEEEEeccCCCCceeeecC--CCCcccccccceecCCCCCCchHHHHHH
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRDRVGGRVHTDY--SFGFPVDLGASWLHGVCQENPLAPVISR 99 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~----G~~V~vlE~~~~~GG~~~s~~--~~g~~~d~G~~~~~~~~~~~~~~~l~~~ 99 (520)
..+.+|+|||||+|||+||++|++. |++|+|||+++.+||++++.. .+|+.++.|.+. . .....+.++++.
T Consensus 20 ~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~-~--~~y~~l~~ll~~ 96 (576)
T PRK13977 20 VDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREM-E--NHFECLWDLFRS 96 (576)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCc-c--chHHHHHHHHHh
Confidence 3468999999999999999999996 679999999999999998744 578999888663 2 345678888877
Q ss_pred c
Q 010001 100 L 100 (520)
Q Consensus 100 l 100 (520)
+
T Consensus 97 i 97 (576)
T PRK13977 97 I 97 (576)
T ss_pred c
Confidence 6
No 35
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.76 E-value=1.5e-17 Score=164.11 Aligned_cols=239 Identities=15% Similarity=0.173 Sum_probs=132.2
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCC--------------------ccccccccee
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFG--------------------FPVDLGASWL 84 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g--------------------~~~d~G~~~~ 84 (520)
|.+.+||+|||+|++|+.+|..|+++|++|+++|+++..||+.+|.+..+ +.+|+.++.+
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l 80 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFI 80 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeee
Confidence 35679999999999999999999999999999999999999999874332 2344555544
Q ss_pred cCCCCCCchHHHHHHcCCCee--eecCCCcccc-ccCccceeeecCCCCccCHHHHHHH---------HHHHHHHHHHHH
Q 010001 85 HGVCQENPLAPVISRLGLPLY--RTSGDNSVLY-DHDLESYALFDMDGNQVPQELVTKV---------GEAFESILKETD 152 (520)
Q Consensus 85 ~~~~~~~~~~~l~~~lg~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 152 (520)
. ....+..++...++... ...-+....+ .++ ....+|....+.+ ++.+.+++....
T Consensus 81 ~---~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g---------~~~~vP~s~~~~~~s~ll~l~eKr~l~kfl~~v~ 148 (443)
T PTZ00363 81 M---ASGELVKILLHTDVTRYLEFKVIDGSYVYQKEG---------KIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVS 148 (443)
T ss_pred e---cCChHHHHHhhcCccceeeeEEeceEEEEecCC---------eEEECCCCHHHHhhCCCcchhhHHHHHHHHHHHH
Confidence 3 34567788877777522 1111122222 111 1111222111111 112233333332
Q ss_pred HhhhcCCCCCcHHHHHHHHHhcCccccccccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhh----h
Q 010001 153 KVREEHDEDMSIQRAISIVFDRRPELRFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRMEGW----F 228 (520)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 228 (520)
....... ... +. ..+...++.+ +++ +.++++...+.+...+... +
T Consensus 149 ~~~~~~~---~~~-------~~-----------~~~d~~T~~d----~L~------~~~ls~~~~d~i~~~ial~~~~~~ 197 (443)
T PTZ00363 149 NYDENDP---ETH-------KG-----------LNLKTMTMAQ----LYK------KFGLEDNTIDFVGHAVALYTNDDY 197 (443)
T ss_pred hhccCCh---hhh-------cc-----------cCcccCCHHH----HHH------HhCCCHHHHHHHHHHHHhhccccc
Confidence 2221110 000 00 0011112222 222 4455555554333222222 1
Q ss_pred cCCcccccccc---cCc--cccccCCccccccChHHHHHHHh-----ccCCeecCceeEEEEEeCC-e-EEEEEcCCcEE
Q 010001 229 AADAETISLKS---WDK--EELLPGGHGLMVRGYLPVINTLA-----KGLDIRLGHRVTKITRHYI-G-VKVTVEGGKTF 296 (520)
Q Consensus 229 ~~~~~~~~~~~---~~~--~~~~~~g~~~~~~G~~~l~~~L~-----~gv~i~~~~~V~~I~~~~~-~-v~V~~~~g~~~ 296 (520)
...+....+.. +.. ..+...+..++.+|++.++++|. .|++++++++|++|..+++ + +.|++.+|+++
T Consensus 198 ~~~pa~~tl~ri~~y~~S~~~~g~~p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i 277 (443)
T PTZ00363 198 LNKPAIETVMRIKLYMDSLSRYGKSPFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVA 277 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCCcceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEE
Confidence 11111111111 110 00112234677899999999996 4889999999999998764 3 57899999999
Q ss_pred EcCEEEEecC
Q 010001 297 VADAVVVAVP 306 (520)
Q Consensus 297 ~ad~VI~a~p 306 (520)
+|+.||+..+
T Consensus 278 ~a~~VV~~~s 287 (443)
T PTZ00363 278 KCKLVICDPS 287 (443)
T ss_pred ECCEEEECcc
Confidence 9999999643
No 36
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.71 E-value=8.1e-18 Score=120.04 Aligned_cols=68 Identities=35% Similarity=0.572 Sum_probs=60.6
Q ss_pred EEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHc
Q 010001 33 VIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRL 100 (520)
Q Consensus 33 IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~l 100 (520)
|||||+|||+||+.|+++|++|+|||+++++||++++...+|+.+|.|++++..+..++++.+++++|
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccEEEeCCCCchHHHHHHcCC
Confidence 89999999999999999999999999999999999999889999999999998654567788888875
No 37
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.70 E-value=1.5e-15 Score=141.50 Aligned_cols=59 Identities=22% Similarity=0.384 Sum_probs=49.6
Q ss_pred CCccccc-cChHHHHHHHh-----ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecC
Q 010001 248 GGHGLMV-RGYLPVINTLA-----KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP 306 (520)
Q Consensus 248 ~g~~~~~-~G~~~l~~~L~-----~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p 306 (520)
.|..++. ....+++++|. .||+++++++|.+|++++.++.|.+++|+++.||.+|+|+.
T Consensus 100 ~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 100 LGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred CceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecC
Confidence 3444555 66677777774 49999999999999999988999999998999999999994
No 38
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.56 E-value=4.2e-13 Score=120.60 Aligned_cols=70 Identities=20% Similarity=0.423 Sum_probs=58.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCC--CCccc-ccccceecCCCCCCchHHHHHH
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS--FGFPV-DLGASWLHGVCQENPLAPVISR 99 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~--~g~~~-d~G~~~~~~~~~~~~~~~l~~~ 99 (520)
++|++|||||++|+.+|..|++.|++|+|+|+.+.+||.|.+... .|..+ --|+|.|+ .++..+++.+..
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFH--T~~~~Vwdyv~~ 73 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFH--TDNKRVWDYVNQ 73 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceee--cCchHHHHHHhh
Confidence 479999999999999999999999999999999999999998665 57544 45999998 455666666554
No 39
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.54 E-value=2.4e-13 Score=133.82 Aligned_cols=43 Identities=35% Similarity=0.368 Sum_probs=36.8
Q ss_pred ccCCeecCceeEEEEEeCCeEE-EEEcCCcEEEcCEEEEecChhh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~-V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
.|++|+.+++|.+|..++++|. |.+++|+ +.+|.||+|+.++.
T Consensus 160 ~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 160 AGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWS 203 (358)
T ss_dssp TT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGH
T ss_pred hhhhccccccccchhhcccccccccccccc-cccceeEecccccc
Confidence 5899999999999999999987 9999995 99999999998765
No 40
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.52 E-value=7.2e-12 Score=124.32 Aligned_cols=43 Identities=35% Similarity=0.526 Sum_probs=40.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
+++||+|||||+||++||+.|+++|.+|+|+|+++.+|-...+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC 44 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence 5799999999999999999999999999999999999887765
No 41
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.52 E-value=2.4e-13 Score=115.48 Aligned_cols=69 Identities=25% Similarity=0.456 Sum_probs=58.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcCCCee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY 105 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~ 105 (520)
...||+|||||+|||+|||+|+++|.+|+|||++-.+||-+.- |++.|+...-.....++++++|++..
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~----------GGmlf~~iVv~~~a~~iL~e~gI~ye 97 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWG----------GGMLFNKIVVREEADEILDEFGIRYE 97 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccc----------cccccceeeecchHHHHHHHhCCcce
Confidence 3579999999999999999999999999999999999997763 56666544445678899999999743
No 42
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.48 E-value=2.4e-11 Score=121.03 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=41.7
Q ss_pred HHHHHh-ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhh
Q 010001 260 VINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 260 l~~~L~-~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
+.+++. .|++++++++|++++.+++++.|++++|+++++|.||.|...+.
T Consensus 119 L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 119 LWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence 334443 48899999999999998888888888888999999999987654
No 43
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.47 E-value=2.6e-13 Score=132.75 Aligned_cols=41 Identities=32% Similarity=0.510 Sum_probs=30.9
Q ss_pred ccCCeecCceeEEEEEeCCe-EEEEEcCCcEEEcCEEEEecC
Q 010001 266 KGLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVP 306 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~-v~V~~~~g~~~~ad~VI~a~p 306 (520)
.|++|+++++|.+|+.++++ +.|.+++++++.||.||+|+.
T Consensus 122 ~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtG 163 (409)
T PF03486_consen 122 LGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATG 163 (409)
T ss_dssp HT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE---
T ss_pred cCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecC
Confidence 49999999999999998888 789887777999999999984
No 44
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.47 E-value=2.7e-12 Score=128.35 Aligned_cols=40 Identities=30% Similarity=0.507 Sum_probs=37.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCce
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~ 66 (520)
+++||+|||||++|++||+.|+++|++|+|+|+.+.+|..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k 43 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK 43 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence 4699999999999999999999999999999999887764
No 45
>PRK09126 hypothetical protein; Provisional
Probab=99.47 E-value=2.8e-11 Score=120.62 Aligned_cols=44 Identities=27% Similarity=0.380 Sum_probs=39.4
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
.|++++++++|.+++.+++.+.|++++|+++++|.||.|...+.
T Consensus 124 ~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 167 (392)
T PRK09126 124 DGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFS 167 (392)
T ss_pred CCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCc
Confidence 48999999999999988888888888998999999999988653
No 46
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.46 E-value=4e-11 Score=120.48 Aligned_cols=40 Identities=25% Similarity=0.532 Sum_probs=36.3
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCC
Q 010001 24 GQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (520)
Q Consensus 24 ~~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~ 63 (520)
.++.++||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus 14 ~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 14 TRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred CCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 3566799999999999999999999999999999998754
No 47
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.46 E-value=3.3e-11 Score=119.92 Aligned_cols=50 Identities=22% Similarity=0.239 Sum_probs=41.0
Q ss_pred HHHHHh-cc-CCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhh
Q 010001 260 VINTLA-KG-LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 260 l~~~L~-~g-v~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
+.+.+. .| ++++++++|++|+.+++++.|++++|+++.+|.||.|...+.
T Consensus 112 L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S 163 (385)
T TIGR01988 112 LWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANS 163 (385)
T ss_pred HHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCC
Confidence 334443 35 899999999999998888999999998999999999987653
No 48
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.44 E-value=6.6e-11 Score=118.35 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=43.0
Q ss_pred HHHHHHh-ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhh
Q 010001 259 PVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 310 (520)
Q Consensus 259 ~l~~~L~-~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l 310 (520)
.+.+.+. .|++++.+++|.+++.+++++.|++.+|+++++|.||.|...+..
T Consensus 117 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 117 ALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA 169 (405)
T ss_pred HHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 3444444 378999999999999998889898899989999999999987643
No 49
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.43 E-value=2.1e-11 Score=122.10 Aligned_cols=39 Identities=28% Similarity=0.505 Sum_probs=35.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
+||+|||||++|+++|++|+++|++|+|+|+++.+|+.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~a 40 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMET 40 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCc
Confidence 699999999999999999999999999999988766444
No 50
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.43 E-value=5.7e-11 Score=117.77 Aligned_cols=50 Identities=28% Similarity=0.320 Sum_probs=41.5
Q ss_pred HHHHHH-hccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhh
Q 010001 259 PVINTL-AKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 259 ~l~~~L-~~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
.+.+.+ ..|++++++++|++|+.+++.+.|++++| ++.+|.||+|+..+.
T Consensus 154 ~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 154 AHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred HHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcch
Confidence 333333 36999999999999999888888998888 799999999998764
No 51
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.41 E-value=9.5e-11 Score=116.34 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=40.6
Q ss_pred HHHHHHHh-ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChh
Q 010001 258 LPVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 308 (520)
Q Consensus 258 ~~l~~~L~-~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 308 (520)
..+.+.+. .|++++.+++|.+|+.+++.+.|.+.+| ++.+|.||+|+..+
T Consensus 149 ~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 149 RALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAW 199 (380)
T ss_pred HHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcc
Confidence 44444433 5899999999999999888888888777 79999999999765
No 52
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.40 E-value=1.3e-12 Score=112.13 Aligned_cols=69 Identities=28% Similarity=0.461 Sum_probs=47.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcCCCee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY 105 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~ 105 (520)
.++||+|||||+|||+||++|+++|++|+|||++..+||.+.. |++.|+...-++....+++++|++..
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~----------Gg~lf~~iVVq~~a~~iL~elgi~y~ 84 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWG----------GGMLFNKIVVQEEADEILDELGIPYE 84 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-----------CTT---EEEETTTHHHHHHHT---E
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccc----------cccccchhhhhhhHHHHHHhCCceeE
Confidence 4689999999999999999999999999999999999987653 34444322223557788999998743
No 53
>PRK10015 oxidoreductase; Provisional
Probab=99.40 E-value=1.3e-10 Score=116.11 Aligned_cols=39 Identities=36% Similarity=0.543 Sum_probs=36.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG 65 (520)
.++||+|||||+||++||+.|+++|++|+|+|+.+.+|-
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~ 42 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGC 42 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCc
Confidence 469999999999999999999999999999999887654
No 54
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.39 E-value=1.5e-10 Score=115.01 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=42.2
Q ss_pred HHHHHhc--cCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhh
Q 010001 260 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 260 l~~~L~~--gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
+.+.+.+ |++++++++|++|+.++++++|++.+|+++.||.||.|.+.+.
T Consensus 111 L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 111 LLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence 3444443 8899999999999998888989888898899999999998764
No 55
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.39 E-value=2.8e-10 Score=113.29 Aligned_cols=49 Identities=20% Similarity=0.116 Sum_probs=39.6
Q ss_pred HHHHHh-cc-CCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhh
Q 010001 260 VINTLA-KG-LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 260 l~~~L~-~g-v~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
+.+++. .| ++++ +++|.+|+.+++++.|++.+|+++.||.||.|...+.
T Consensus 117 L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S 167 (388)
T PRK07608 117 LWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHS 167 (388)
T ss_pred HHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCc
Confidence 334444 35 7888 9999999988888889888898899999999987653
No 56
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.39 E-value=1.9e-10 Score=113.97 Aligned_cols=51 Identities=25% Similarity=0.330 Sum_probs=41.8
Q ss_pred HHHHHh-c-cCCeecCceeEEEEEeCCeEEEEEc-CCcEEEcCEEEEecChhhh
Q 010001 260 VINTLA-K-GLDIRLGHRVTKITRHYIGVKVTVE-GGKTFVADAVVVAVPLGVL 310 (520)
Q Consensus 260 l~~~L~-~-gv~i~~~~~V~~I~~~~~~v~V~~~-~g~~~~ad~VI~a~p~~~l 310 (520)
+.+++. . +++++.+++|+.++.+++.+.|+.+ +|++++||.||-|=..+-.
T Consensus 110 L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~ 163 (387)
T COG0654 110 LLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSA 163 (387)
T ss_pred HHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchH
Confidence 344443 2 4799999999999999999888888 9999999999999776543
No 57
>PRK08013 oxidoreductase; Provisional
Probab=99.38 E-value=5e-10 Score=111.63 Aligned_cols=44 Identities=14% Similarity=0.079 Sum_probs=39.3
Q ss_pred cCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhh
Q 010001 267 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 310 (520)
Q Consensus 267 gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l 310 (520)
|++++++++|.+|+.+++.+.|+..+|+++++|.||-|-..+-.
T Consensus 126 ~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~ 169 (400)
T PRK08013 126 DITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSW 169 (400)
T ss_pred CcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcH
Confidence 78999999999999988888888889999999999999876643
No 58
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.38 E-value=2.8e-10 Score=108.75 Aligned_cols=37 Identities=41% Similarity=0.531 Sum_probs=34.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCc
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG 65 (520)
+||+|||||++||++|+.|++.|.+|+|+|+.+.++.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 6999999999999999999999999999999887654
No 59
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.37 E-value=1.1e-11 Score=119.95 Aligned_cols=43 Identities=33% Similarity=0.505 Sum_probs=39.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCC--CcEEEEeccCCCCceeee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G--~~V~vlE~~~~~GG~~~s 69 (520)
+++||+|||||+.|+++|+.|++.+ ++|+|+|+.+.+|-..++
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~ 46 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSS 46 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccccccc
Confidence 5789999999999999999999998 999999999999877766
No 60
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.37 E-value=3.4e-10 Score=112.60 Aligned_cols=51 Identities=24% Similarity=0.171 Sum_probs=40.2
Q ss_pred HHHHHHhc-cCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhh
Q 010001 259 PVINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 259 ~l~~~L~~-gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
.+.+++.+ +...+++++|.+++.+++++.|++++|+++++|.||.|...+.
T Consensus 116 ~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 167 (388)
T PRK07494 116 ALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNS 167 (388)
T ss_pred HHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCc
Confidence 34455443 3334889999999999999999988998999999999987653
No 61
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.36 E-value=3.3e-10 Score=113.44 Aligned_cols=50 Identities=26% Similarity=0.292 Sum_probs=41.7
Q ss_pred HHHHHh-ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhh
Q 010001 260 VINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 260 l~~~L~-~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
+.+++. .|++++++++|++++.+++.+.|++.+|+++++|.||.|...+.
T Consensus 117 L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S 167 (403)
T PRK07333 117 LRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARS 167 (403)
T ss_pred HHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCCh
Confidence 344443 48899999999999999998988888998999999999987653
No 62
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.36 E-value=2.1e-11 Score=112.02 Aligned_cols=42 Identities=36% Similarity=0.521 Sum_probs=39.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
.++||+|||||++||+||+.|+++|++|+|+|++..+||.+.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~ 61 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSW 61 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 468999999999999999999999999999999999988653
No 63
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.36 E-value=4.6e-10 Score=112.09 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=39.0
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
.|++++++++|.++..+++++.|++++|.++++|.||.|...+.
T Consensus 126 ~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 126 PGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred CCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCh
Confidence 37899999999999988888989988888899999999997653
No 64
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.35 E-value=3.2e-10 Score=113.99 Aligned_cols=41 Identities=24% Similarity=0.376 Sum_probs=35.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
+||+|||||++||++|++|+++|++|+|+|+...+|..++.
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~~~aS~ 41 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPALETSF 41 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchhhhhee
Confidence 48999999999999999999999999999998666555443
No 65
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.35 E-value=2.4e-10 Score=114.19 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=42.7
Q ss_pred HHHHHHh--ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhh
Q 010001 259 PVINTLA--KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 259 ~l~~~L~--~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
.+.+++. .|++++++++|++|+.+++.+.|++.+|++++||.||-|...+.
T Consensus 116 ~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S 168 (405)
T PRK08850 116 ALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANS 168 (405)
T ss_pred HHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCC
Confidence 3445554 37899999999999998888889999999999999999988654
No 66
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.35 E-value=4.2e-10 Score=112.12 Aligned_cols=43 Identities=19% Similarity=0.218 Sum_probs=38.8
Q ss_pred cCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhh
Q 010001 267 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 267 gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
|++++.+++|.+++.+++++.|.+.+|+++++|.||.|...+.
T Consensus 127 gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (391)
T PRK08020 127 NVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANS 169 (391)
T ss_pred CcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCc
Confidence 8899999999999988888888888898999999999997664
No 67
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.34 E-value=2e-11 Score=112.53 Aligned_cols=42 Identities=33% Similarity=0.506 Sum_probs=38.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
.++||+|||||+|||+||+.|+++|++|+|+|++..+||.+.
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~ 65 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMW 65 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccc
Confidence 468999999999999999999999999999999999988653
No 68
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.31 E-value=1.8e-11 Score=121.68 Aligned_cols=51 Identities=27% Similarity=0.398 Sum_probs=41.5
Q ss_pred HHHHHHHh-ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhh
Q 010001 258 LPVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 258 ~~l~~~L~-~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
..+.+.+. .|++++++++|.+|+.+++++.|.+.+| ++.+|.||+|++.+.
T Consensus 153 ~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 153 EAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcch
Confidence 34444443 5899999999999998888888888877 799999999998754
No 69
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.31 E-value=1.4e-09 Score=107.77 Aligned_cols=44 Identities=20% Similarity=0.182 Sum_probs=39.8
Q ss_pred cCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhh
Q 010001 267 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 310 (520)
Q Consensus 267 gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l 310 (520)
+++++.+++|.+++.+++++.|++++|+++++|.||-|...+..
T Consensus 125 ~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 125 NLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQ 168 (384)
T ss_pred CeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCch
Confidence 68999999999999998889999999999999999999877643
No 70
>PRK07588 hypothetical protein; Provisional
Probab=99.31 E-value=4.6e-10 Score=111.74 Aligned_cols=49 Identities=24% Similarity=0.259 Sum_probs=42.1
Q ss_pred HHHhccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhh
Q 010001 262 NTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 310 (520)
Q Consensus 262 ~~L~~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l 310 (520)
+++..+++++++++|.+|+.+++++.|++++|+++++|.||-|-..+..
T Consensus 111 ~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 111 TAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred HhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence 4444578999999999999999999999999999999999999876643
No 71
>PRK06847 hypothetical protein; Provisional
Probab=99.31 E-value=4.2e-10 Score=111.48 Aligned_cols=44 Identities=43% Similarity=0.398 Sum_probs=39.5
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
.|++++++++|.+|+.+++++.|.+.+|+++.+|.||.|...+.
T Consensus 120 ~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 120 AGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred hCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCc
Confidence 48899999999999998888888888998999999999998654
No 72
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=99.30 E-value=2.4e-10 Score=110.66 Aligned_cols=71 Identities=23% Similarity=0.276 Sum_probs=53.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhC----CCcEEEEeccCCCCceeeecCC--CCcccccccceecCCCCCCchHHHHHHcC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRDRVGGRVHTDYS--FGFPVDLGASWLHGVCQENPLAPVISRLG 101 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~----G~~V~vlE~~~~~GG~~~s~~~--~g~~~d~G~~~~~~~~~~~~~~~l~~~lg 101 (520)
+.++-|||+|+|+|+||.+|.+. |.+|+|||+.+.+||.+.+... .||.+.-|-+.. .....+.+|+..+.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~~~---~~~eclwdLls~IP 78 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRMME---FHYECLWDLLSSIP 78 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCcccc---chhHHHHHHHHhCC
Confidence 46889999999999999999997 5699999999999999976433 467665543321 12345677776654
No 73
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.30 E-value=4.4e-10 Score=112.50 Aligned_cols=40 Identities=33% Similarity=0.425 Sum_probs=34.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhC-CC-cEEEEeccCCCCc
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDA-SF-KVVLLESRDRVGG 65 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~-G~-~V~vlE~~~~~GG 65 (520)
+..+||+|||||++|+++|++|+++ |. +|+|+|+....+|
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~g 69 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGG 69 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCc
Confidence 4579999999999999999999996 95 9999999764333
No 74
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.27 E-value=3.1e-09 Score=108.65 Aligned_cols=43 Identities=26% Similarity=0.406 Sum_probs=38.5
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
|.+.+||+|||||++|+++|+.|+++|.+|+|+|+++..+|..
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS 45 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATS 45 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence 4567999999999999999999999999999999987666654
No 75
>PRK06834 hypothetical protein; Provisional
Probab=99.27 E-value=2.5e-09 Score=108.70 Aligned_cols=44 Identities=27% Similarity=0.293 Sum_probs=39.3
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
.|++++++++|++|+.+++++.|++.+|+++++|+||.|...+.
T Consensus 113 ~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S 156 (488)
T PRK06834 113 LGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRS 156 (488)
T ss_pred CCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCC
Confidence 38899999999999999999988888888899999999987654
No 76
>PRK11445 putative oxidoreductase; Provisional
Probab=99.27 E-value=3e-09 Score=103.99 Aligned_cols=45 Identities=20% Similarity=0.113 Sum_probs=37.4
Q ss_pred hccCCeecCceeEEEEEeCCeEEEEE-cCCc--EEEcCEEEEecChhh
Q 010001 265 AKGLDIRLGHRVTKITRHYIGVKVTV-EGGK--TFVADAVVVAVPLGV 309 (520)
Q Consensus 265 ~~gv~i~~~~~V~~I~~~~~~v~V~~-~~g~--~~~ad~VI~a~p~~~ 309 (520)
..|+++++++.|.+++.+++++.|+. .+|+ +++||.||.|...+.
T Consensus 110 ~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 110 PASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANS 157 (351)
T ss_pred hcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCc
Confidence 46899999999999999888887774 5664 689999999987654
No 77
>PRK06185 hypothetical protein; Provisional
Probab=99.26 E-value=7.3e-10 Score=111.03 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=34.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
.+++||+|||||++||++|..|+++|++|+|+|+.+.
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 4679999999999999999999999999999999753
No 78
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.26 E-value=1.1e-08 Score=100.78 Aligned_cols=202 Identities=21% Similarity=0.108 Sum_probs=104.6
Q ss_pred HHHHhccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCchHHHHHHhhcCCcceeEE
Q 010001 261 INTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKI 340 (520)
Q Consensus 261 ~~~L~~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~v 340 (520)
.+.+.++..+++++.|.+|+..++.+.|.+++|++++|+.||-|.++...... ... +-...-+
T Consensus 94 ~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~~~~-------------~~~----~Q~f~G~ 156 (374)
T PF05834_consen 94 LERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSPKAR-------------PLG----LQHFYGW 156 (374)
T ss_pred HHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccccccc-------------ccc----cceeEEE
Confidence 44555566889999999999999988899999999999999999885432100 000 0001112
Q ss_pred EEEeCCCcccCC--ccceeecCCC-CceeEeeeccCCCCceEEEEEechhhhHHHhcCCHHHHHHHHHHHHHHHCCCCCC
Q 010001 341 IMHFDKVFWPNV--EFLGVVSDTS-YGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASS 417 (520)
Q Consensus 341 ~l~~~~~~~~~~--~~~g~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~~~~~~ 417 (520)
.+..+.+.+... .++.+..++. ....+.+... -+....++-++.-. .-..++.+++.+.+.+.|++ .+- ..
T Consensus 157 ~v~~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP-~~~~~alvE~T~fs---~~~~~~~~~~~~~l~~~l~~-~g~-~~ 230 (374)
T PF05834_consen 157 EVETDEPVFDPDTATLMDFRVPQSADGPSFLYVLP-FSEDRALVEETSFS---PRPALPEEELKARLRRYLER-LGI-DD 230 (374)
T ss_pred EEeccCCCCCCCceEEEEecccCCCCCceEEEEEE-cCCCeEEEEEEEEc---CCCCCCHHHHHHHHHHHHHH-cCC-Cc
Confidence 233444432211 1223322222 1111111111 12233443221100 01236788899999999988 332 11
Q ss_pred CcEEEeccCCCCCCCCccccCCCCCCChhHHHHhcCCCCcEEEeeccccCcCCccchHHHHHHHHHHHHHHHHHHHHhCC
Q 010001 418 PIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGE 497 (520)
Q Consensus 418 ~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~~l~~~~~~ 497 (520)
.++.......-|.+.+. ......+++..+|+..+...| ....++....++|+.|.+.+......
T Consensus 231 -~~i~~~E~G~IPm~~~~--------------~~~~~~~~v~~iG~agG~v~P-sTGYs~~~~~~~a~~ia~~l~~~~~~ 294 (374)
T PF05834_consen 231 -YEILEEERGVIPMTTGG--------------FPPRFGQRVIRIGTAGGMVKP-STGYSFARIQRQADAIADALAKGGAP 294 (374)
T ss_pred -eeEEEeecceeecccCC--------------CccccCCCeeeEEccccCCCC-cccHHHHHHHHHHHHHHHHHhhcccc
Confidence 11111111111111110 011123568888987665443 33457778888888888877764333
Q ss_pred Cccc
Q 010001 498 LDLF 501 (520)
Q Consensus 498 ~~~~ 501 (520)
...+
T Consensus 295 ~~~~ 298 (374)
T PF05834_consen 295 LRAW 298 (374)
T ss_pred cccc
Confidence 3333
No 79
>PRK07045 putative monooxygenase; Reviewed
Probab=99.26 E-value=2.8e-09 Score=105.95 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=38.0
Q ss_pred ccCCeecCceeEEEEEeCCe--EEEEEcCCcEEEcCEEEEecChhhh
Q 010001 266 KGLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVPLGVL 310 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~--v~V~~~~g~~~~ad~VI~a~p~~~l 310 (520)
.|++++++++|++|+.++++ +.|++++|+++.+|.||-|...+..
T Consensus 120 ~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 120 PNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSM 166 (388)
T ss_pred CCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChH
Confidence 47899999999999987665 3688889999999999999876643
No 80
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.25 E-value=6.6e-09 Score=103.50 Aligned_cols=40 Identities=33% Similarity=0.556 Sum_probs=36.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCc
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG 65 (520)
.+++||+|||||++||++||+|+|+|.+|+|+|+....+|
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g 41 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGG 41 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCc
Confidence 4689999999999999999999999999999999765543
No 81
>PRK08244 hypothetical protein; Provisional
Probab=99.25 E-value=1.2e-09 Score=112.02 Aligned_cols=35 Identities=31% Similarity=0.418 Sum_probs=33.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
++||+|||||++||++|..|+++|++|+|+|+.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 58999999999999999999999999999999765
No 82
>PRK06184 hypothetical protein; Provisional
Probab=99.25 E-value=3.5e-09 Score=108.80 Aligned_cols=45 Identities=22% Similarity=0.204 Sum_probs=38.1
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEE---cCCcEEEcCEEEEecChhhh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTV---EGGKTFVADAVVVAVPLGVL 310 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~---~~g~~~~ad~VI~a~p~~~l 310 (520)
.|++++++++|.+|+.+++++.++. .+++++++|+||.|...+..
T Consensus 122 ~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 122 LGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSF 169 (502)
T ss_pred CCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchH
Confidence 4889999999999999888887765 56678999999999987653
No 83
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.25 E-value=2.8e-09 Score=109.91 Aligned_cols=39 Identities=31% Similarity=0.536 Sum_probs=35.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG 65 (520)
..+||+|||||++|+++|+.|+++|++|+|+|+++..+|
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~G 43 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATG 43 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCC
Confidence 469999999999999999999999999999999765444
No 84
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.24 E-value=3.4e-09 Score=104.68 Aligned_cols=50 Identities=2% Similarity=0.067 Sum_probs=40.2
Q ss_pred HHHHHhc--cCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhh
Q 010001 260 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 310 (520)
Q Consensus 260 l~~~L~~--gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l 310 (520)
+.+++.+ +++++++++|.+|..+++++.|.+.++ ++++|.||-|-..+-.
T Consensus 110 L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~ 161 (374)
T PRK06617 110 LLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSK 161 (374)
T ss_pred HHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCch
Confidence 3444443 478999999999999988888888777 8999999999876643
No 85
>PLN02463 lycopene beta cyclase
Probab=99.24 E-value=7.9e-10 Score=110.15 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=36.9
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 308 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 308 (520)
.|++++ +++|.+|+..++++.|++++|++++||.||.|....
T Consensus 127 ~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 127 NGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFS 168 (447)
T ss_pred cCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCC
Confidence 478875 679999999988899999999899999999999765
No 86
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.22 E-value=6.8e-11 Score=106.27 Aligned_cols=41 Identities=41% Similarity=0.551 Sum_probs=32.7
Q ss_pred cCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecCh
Q 010001 267 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 307 (520)
Q Consensus 267 gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 307 (520)
+++++++++|++|++++++|.|++.++++++||+||+|+..
T Consensus 96 ~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 96 GLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp TGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---S
T ss_pred CcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeec
Confidence 66799999999999999999999999989999999999874
No 87
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.21 E-value=2.5e-10 Score=120.87 Aligned_cols=53 Identities=25% Similarity=0.349 Sum_probs=43.0
Q ss_pred hHHHHHHHhccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhh
Q 010001 257 YLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 257 ~~~l~~~L~~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
...+.+.+.+|++++.+++|.+|+.+++++.|.+++|..+.+|.||+|+..+.
T Consensus 411 ~~aL~~~a~~Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 411 CRALLALAGQQLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred HHHHHHhcccCcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence 34444444347899999999999998888889888887778999999998765
No 88
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.21 E-value=1.9e-10 Score=116.49 Aligned_cols=51 Identities=20% Similarity=0.158 Sum_probs=39.5
Q ss_pred hHHHHHHHh-ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhh
Q 010001 257 YLPVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 257 ~~~l~~~L~-~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
...+.+++. .|++|+.+++|.+|+. ++.+.|++.+| ++.||+||+|+..+.
T Consensus 186 ~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s 237 (460)
T TIGR03329 186 VRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWM 237 (460)
T ss_pred HHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEcccccc
Confidence 344444443 5999999999999985 45577888888 799999999987653
No 89
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.20 E-value=9.3e-09 Score=107.30 Aligned_cols=41 Identities=29% Similarity=0.443 Sum_probs=36.7
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCce
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~ 66 (520)
..++||+|||||+.|+++|+.|+++|.+|+|+|+++..+|.
T Consensus 69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~Gt 109 (627)
T PLN02464 69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSGT 109 (627)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCCc
Confidence 35699999999999999999999999999999998765553
No 90
>PRK06996 hypothetical protein; Provisional
Probab=99.20 E-value=9.7e-09 Score=102.33 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=38.0
Q ss_pred HHHHHh-ccCCeecCceeEEEEEeCCeEEEEEcCC---cEEEcCEEEEecC
Q 010001 260 VINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVP 306 (520)
Q Consensus 260 l~~~L~-~gv~i~~~~~V~~I~~~~~~v~V~~~~g---~~~~ad~VI~a~p 306 (520)
|.+++. .|++++++++|.+++.+++++.|+..+| +++++|.||-|-.
T Consensus 121 L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG 171 (398)
T PRK06996 121 LARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEG 171 (398)
T ss_pred HHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCC
Confidence 344444 3789999999999999888888887754 5899999999966
No 91
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.20 E-value=5.3e-09 Score=108.58 Aligned_cols=38 Identities=37% Similarity=0.546 Sum_probs=35.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~ 63 (520)
+.++||+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 46689999999999999999999999999999998754
No 92
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=4.7e-10 Score=105.32 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=35.3
Q ss_pred hcCCCCcEEEeeccccCcCCccchHHHHHHHHHHHHHHHHHHHH
Q 010001 451 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 494 (520)
Q Consensus 451 ~~~p~~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~~l~~~ 494 (520)
++|.++|+|.|||.....+. .+.-|+-+|..||.++.+.|.+.
T Consensus 261 ~~TsvpGifAaGDv~~~~~r-qi~ta~~~G~~Aa~~a~~~l~~~ 303 (305)
T COG0492 261 METSVPGIFAAGDVADKNGR-QIATAAGDGAIAALSAERYLESL 303 (305)
T ss_pred cccCCCCEEEeEeeccCccc-EEeehhhhHHHHHHHHHHHhhhc
Confidence 78899999999999887542 56678899999999888877654
No 93
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.19 E-value=4e-10 Score=112.95 Aligned_cols=45 Identities=42% Similarity=0.559 Sum_probs=41.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
+.+.++|+|||||+|||+||.+|.+.|++|+|||+++.+||.+..
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~ 51 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY 51 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence 345689999999999999999999999999999999999998754
No 94
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.19 E-value=9.9e-09 Score=105.08 Aligned_cols=43 Identities=30% Similarity=0.480 Sum_probs=37.9
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
|..++||+|||||++|+++|+.|+++|.+|+|+|+++..+|..
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS 45 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTS 45 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCc
Confidence 4567999999999999999999999999999999997655543
No 95
>PRK07190 hypothetical protein; Provisional
Probab=99.18 E-value=9.1e-09 Score=104.46 Aligned_cols=45 Identities=18% Similarity=0.201 Sum_probs=39.8
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 310 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l 310 (520)
.|++++++++|++|+.+++++.+.+.+|++++|++||.|...+..
T Consensus 122 ~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S~ 166 (487)
T PRK07190 122 AGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRSF 166 (487)
T ss_pred CCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCHH
Confidence 489999999999999999888887788889999999999987653
No 96
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.18 E-value=6.2e-09 Score=107.79 Aligned_cols=39 Identities=28% Similarity=0.459 Sum_probs=35.6
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~G 64 (520)
..++||+|||||++||++|..|+++|++|+|+|+...++
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~ 46 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLY 46 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 356899999999999999999999999999999987654
No 97
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.18 E-value=9.7e-09 Score=103.50 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=40.4
Q ss_pred HHHHHHhc----cCCeecCceeEEEEEe-------CCeEEEEEcCCcEEEcCEEEEecChhhh
Q 010001 259 PVINTLAK----GLDIRLGHRVTKITRH-------YIGVKVTVEGGKTFVADAVVVAVPLGVL 310 (520)
Q Consensus 259 ~l~~~L~~----gv~i~~~~~V~~I~~~-------~~~v~V~~~~g~~~~ad~VI~a~p~~~l 310 (520)
.+.+++.+ +++++++++|.+|+.. +++++|++.+|++++||.||-|-..+..
T Consensus 122 ~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 122 SLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred HHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence 34455543 4799999999999753 4568888999999999999999876643
No 98
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.17 E-value=9.4e-10 Score=110.75 Aligned_cols=42 Identities=29% Similarity=0.230 Sum_probs=35.9
Q ss_pred CCeecCceeEEEEEeC-CeEEEEEcCCcEEEcCEEEEecChhhh
Q 010001 268 LDIRLGHRVTKITRHY-IGVKVTVEGGKTFVADAVVVAVPLGVL 310 (520)
Q Consensus 268 v~i~~~~~V~~I~~~~-~~v~V~~~~g~~~~ad~VI~a~p~~~l 310 (520)
++|+++++|++|++++ +.+.|++.+| ++.||.||+|+..+..
T Consensus 232 v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 232 ISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred EEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 6789999999999884 4578888888 7999999999987654
No 99
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.17 E-value=1.4e-08 Score=100.79 Aligned_cols=42 Identities=36% Similarity=0.520 Sum_probs=39.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
+.+||+||||||+|+.+|+.++-+|++|+++|+++...|..+
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSs 52 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSS 52 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccC
Confidence 789999999999999999999999999999999998877654
No 100
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.17 E-value=1.7e-10 Score=104.68 Aligned_cols=65 Identities=20% Similarity=0.183 Sum_probs=49.4
Q ss_pred cCCccccccChHHHHHHHh-ccCCeecCceeEEEEEe---CCeEEEEEcCCcEEEcCEEEEecChhhhh
Q 010001 247 PGGHGLMVRGYLPVINTLA-KGLDIRLGHRVTKITRH---YIGVKVTVEGGKTFVADAVVVAVPLGVLK 311 (520)
Q Consensus 247 ~~g~~~~~~G~~~l~~~L~-~gv~i~~~~~V~~I~~~---~~~v~V~~~~g~~~~ad~VI~a~p~~~l~ 311 (520)
.+|..+....+..+.+.+. -|+.++-+..|..++.. +..+.|.|.+|..+.++.+|+|+.++..+
T Consensus 146 ~gGvi~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k 214 (399)
T KOG2820|consen 146 SGGVINAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK 214 (399)
T ss_pred cccEeeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh
Confidence 4444444444555555554 49999999999998854 34578999999889999999999998765
No 101
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.17 E-value=1.8e-08 Score=100.02 Aligned_cols=32 Identities=41% Similarity=0.570 Sum_probs=31.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
|||+|||||+||++||+.|+++|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 69999999999999999999999999999997
No 102
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.17 E-value=9e-09 Score=103.20 Aligned_cols=37 Identities=35% Similarity=0.501 Sum_probs=34.5
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+++||+|||||++|++||+.|+++|++|+|+|++.
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 4567999999999999999999999999999999974
No 103
>PRK06126 hypothetical protein; Provisional
Probab=99.16 E-value=6.8e-09 Score=107.88 Aligned_cols=37 Identities=27% Similarity=0.495 Sum_probs=34.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
..++||+|||||++||++|..|+++|++|+|+|+.+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 3568999999999999999999999999999999753
No 104
>PRK07236 hypothetical protein; Provisional
Probab=99.15 E-value=9.5e-10 Score=109.18 Aligned_cols=43 Identities=19% Similarity=0.087 Sum_probs=38.2
Q ss_pred cCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhh
Q 010001 267 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 267 gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
+++++++++|++|+.+++++.|.+++|+++++|.||.|-..+.
T Consensus 112 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S 154 (386)
T PRK07236 112 AERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRS 154 (386)
T ss_pred CcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 4579999999999999888999999999999999999976554
No 105
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.11 E-value=2.1e-08 Score=99.73 Aligned_cols=35 Identities=43% Similarity=0.610 Sum_probs=33.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
++||+|||||++||++|..|+++|++|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 58999999999999999999999999999999874
No 106
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.10 E-value=2e-08 Score=99.90 Aligned_cols=37 Identities=35% Similarity=0.552 Sum_probs=34.4
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCce
Q 010001 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~ 66 (520)
||+|||||++|+++|+.|+++|++|+|+|+++..||.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~ 37 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN 37 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence 8999999999999999999999999999998877653
No 107
>PLN02661 Putative thiazole synthesis
Probab=99.10 E-value=1.3e-09 Score=102.80 Aligned_cols=42 Identities=31% Similarity=0.540 Sum_probs=38.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhC-CCcEEEEeccCCCCceee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~-G~~V~vlE~~~~~GG~~~ 68 (520)
.++||+|||||++||+||+.|++. |++|+|+|++..+||.+.
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~ 133 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAW 133 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccccee
Confidence 468999999999999999999986 899999999999988554
No 108
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.09 E-value=4.6e-10 Score=110.72 Aligned_cols=34 Identities=32% Similarity=0.543 Sum_probs=32.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
+||+|||||++|+++|++|+++|++|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5999999999999999999999999999999764
No 109
>PRK05868 hypothetical protein; Validated
Probab=99.08 E-value=9.4e-10 Score=108.25 Aligned_cols=47 Identities=17% Similarity=0.099 Sum_probs=41.0
Q ss_pred HhccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhh
Q 010001 264 LAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 310 (520)
Q Consensus 264 L~~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l 310 (520)
+..|++++++++|++|+.++++++|+.++|+++++|.||-|-..+..
T Consensus 115 ~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~ 161 (372)
T PRK05868 115 TQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSN 161 (372)
T ss_pred ccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCch
Confidence 34688999999999999888889999999999999999999876643
No 110
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.08 E-value=6e-08 Score=100.48 Aligned_cols=41 Identities=27% Similarity=0.424 Sum_probs=36.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
..+||+|||||+|||+||..++++|.+|+|+||....||.+
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s 44 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHS 44 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcc
Confidence 46899999999999999999999999999999987766643
No 111
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.07 E-value=2.3e-09 Score=107.09 Aligned_cols=55 Identities=40% Similarity=0.552 Sum_probs=48.4
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCc-EEEEeccCCCCceeeecCCCCccccc
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFK-VVLLESRDRVGGRVHTDYSFGFPVDL 79 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~-V~vlE~~~~~GG~~~s~~~~g~~~d~ 79 (520)
..+.+||+|||||+|||++|+.|.++|.. ++||||++.+||.-+.++.++.+.+.
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~ 60 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDS 60 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECC
Confidence 45789999999999999999999999998 99999999999988776666665554
No 112
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.07 E-value=1.9e-09 Score=108.05 Aligned_cols=43 Identities=19% Similarity=0.333 Sum_probs=37.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCCCCceee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~--G~~V~vlE~~~~~GG~~~ 68 (520)
...+||+||||||+|+++|+.|++. |.+|+|+|+.+.+|-..+
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS 48 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESS 48 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcC
Confidence 4568999999999999999999999 899999999667665443
No 113
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.06 E-value=4.7e-08 Score=101.85 Aligned_cols=38 Identities=24% Similarity=0.422 Sum_probs=35.0
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
||+|||||+|||+||..++++|.+|+|+|+....||.+
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s 38 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHT 38 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence 89999999999999999999999999999988776644
No 114
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.05 E-value=2.3e-09 Score=102.71 Aligned_cols=42 Identities=29% Similarity=0.342 Sum_probs=36.8
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 308 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 308 (520)
.|+++++ ++|.+|+..++.+.|++.+|+++.+|+||+|+...
T Consensus 70 ~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 70 FGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGAS 111 (300)
T ss_pred cCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCC
Confidence 4788888 89999999888888888888899999999999763
No 115
>PRK07538 hypothetical protein; Provisional
Probab=99.05 E-value=7.6e-08 Score=96.49 Aligned_cols=35 Identities=29% Similarity=0.578 Sum_probs=32.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~ 63 (520)
+||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 58999999999999999999999999999997654
No 116
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.05 E-value=7.3e-10 Score=110.60 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=42.1
Q ss_pred HHHHHHhc--cCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhh
Q 010001 259 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 310 (520)
Q Consensus 259 ~l~~~L~~--gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l 310 (520)
.+.+.+.+ +++++++++|.+++.+++++.|++.+|+++.+|.||.|...+..
T Consensus 114 ~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 114 SLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred HHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChH
Confidence 34454432 47999999999999888888888889988999999999876643
No 117
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.04 E-value=7.3e-09 Score=105.99 Aligned_cols=43 Identities=33% Similarity=0.502 Sum_probs=39.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
..++||+|||||++||+||+.++++|.+|+|||+.+..||...
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~ 101 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTM 101 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence 4578999999999999999999999999999999999988643
No 118
>PRK06753 hypothetical protein; Provisional
Probab=99.03 E-value=2.1e-09 Score=106.39 Aligned_cols=44 Identities=23% Similarity=0.139 Sum_probs=38.7
Q ss_pred cCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhh
Q 010001 267 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 310 (520)
Q Consensus 267 gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l 310 (520)
+.+|+++++|++|+.+++++.|++++|+++.+|.||-|-..+..
T Consensus 110 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 110 EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence 45799999999999888889999999999999999999886643
No 119
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.03 E-value=7.8e-09 Score=88.04 Aligned_cols=48 Identities=29% Similarity=0.452 Sum_probs=38.6
Q ss_pred HHHHHhccCCe-ecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecCh
Q 010001 260 VINTLAKGLDI-RLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 307 (520)
Q Consensus 260 l~~~L~~gv~i-~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 307 (520)
+.+.+..|++| +...+|.+|...++++.|.+.+|..+.+|+||+|+..
T Consensus 107 ~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 107 LLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred HHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 34444456643 3577999999999999999999999999999999863
No 120
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.03 E-value=3.6e-09 Score=107.04 Aligned_cols=44 Identities=18% Similarity=0.375 Sum_probs=37.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCCCCceeee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~--G~~V~vlE~~~~~GG~~~s 69 (520)
...+||+|||||+.|+++|++|++. |.+|+|+|+.+.+|+..++
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS~ 48 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESSN 48 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcCC
Confidence 3568999999999999999999985 7899999998877665543
No 121
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=99.03 E-value=4e-09 Score=103.13 Aligned_cols=236 Identities=18% Similarity=0.179 Sum_probs=115.0
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCC---------------------CCcccccccce
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS---------------------FGFPVDLGASW 83 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~---------------------~g~~~d~G~~~ 83 (520)
|+..+||+|+|.|+.-.-.|..|++.|++|+.+|+++..||..+|... ..+.+|+-+..
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKl 80 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKL 80 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--B
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHh
Confidence 457899999999999999999999999999999999999999988541 13566666666
Q ss_pred ecCCCCCCchHHHHHHcCCCee--eecCCCccccccCccceeeecCCCCccCHHHHHH---------HHHHHHHHHHHHH
Q 010001 84 LHGVCQENPLAPVISRLGLPLY--RTSGDNSVLYDHDLESYALFDMDGNQVPQELVTK---------VGEAFESILKETD 152 (520)
Q Consensus 84 ~~~~~~~~~~~~l~~~lg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 152 (520)
+. ....+.+++-.-++.-. ...-+....+.++ ....+|....+. -++.+.+|+....
T Consensus 81 l~---a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~~~---------~l~kVP~sr~dvf~s~~lsl~eKR~lmkFl~~v~ 148 (438)
T PF00996_consen 81 LY---ARGPLVKLLISSGVTRYLEFKAVDGSYVYKNG---------KLHKVPCSREDVFKSKLLSLFEKRRLMKFLKFVA 148 (438)
T ss_dssp EE---TTSHHHHHHHHCTGGGGSEEEEESEEEEEETT---------EEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHH
T ss_pred hh---ccCHHHHHHHhCCcccceEEEEcceeEEEeCC---------EEeeCCCCHHHhhcCCCccHHHHHHHHHHHHHHh
Confidence 54 34566677666666411 1111111122111 111222211111 1222334444433
Q ss_pred HhhhcCCCCCcHHHHHHHHHhcCccccccccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCc
Q 010001 153 KVREEHDEDMSIQRAISIVFDRRPELRFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRMEGWFAADA 232 (520)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (520)
.......... +.+ .... ..+.++++ ..++++...+.+...++.......
T Consensus 149 ~~~~~~~~~~-------------------~~~--~~~~----~~~~e~~~------~f~L~~~~~~~i~haiaL~~~~~~ 197 (438)
T PF00996_consen 149 NYEEDDPSTH-------------------KGL--DPEK----KTFQELLK------KFGLSENLIDFIGHAIALSLDDSY 197 (438)
T ss_dssp HGCTTBGGGS-------------------TTG---TTT----SBHHHHHH------HTTS-HHHHHHHHHHTS-SSSSGG
T ss_pred hcccCCcchh-------------------hcc--cccc----ccHHHHHH------hcCCCHHHHHHHHHhhhhccCccc
Confidence 3221111000 000 0001 11222222 456666666655433322111110
Q ss_pred ccccc-------cccC--ccccccCCccccccChHHHHHHHh-----ccCCeecCceeEEEEEeCC-eE-EEEEcCCcEE
Q 010001 233 ETISL-------KSWD--KEELLPGGHGLMVRGYLPVINTLA-----KGLDIRLGHRVTKITRHYI-GV-KVTVEGGKTF 296 (520)
Q Consensus 233 ~~~~~-------~~~~--~~~~~~~g~~~~~~G~~~l~~~L~-----~gv~i~~~~~V~~I~~~~~-~v-~V~~~~g~~~ 296 (520)
..-+. ..+. ...+....+.++.-|.+.+++++. .|+.+.+|++|.+|..+++ .+ .|.. +|+++
T Consensus 198 ~~~p~~~~l~ri~~yl~SlgryG~sPfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v 276 (438)
T PF00996_consen 198 LTEPAREGLERIKLYLSSLGRYGKSPFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVV 276 (438)
T ss_dssp GGSBSHHHHHHHHHHHHHHCCCSSSSEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEE
T ss_pred ccccHHHHHHHHHHHHHHHhccCCCCEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEE
Confidence 00000 0011 011123355577778888888875 3889999999999998654 43 4654 78899
Q ss_pred EcCEEEEe
Q 010001 297 VADAVVVA 304 (520)
Q Consensus 297 ~ad~VI~a 304 (520)
+|++||..
T Consensus 277 ~~k~vI~d 284 (438)
T PF00996_consen 277 KAKKVIGD 284 (438)
T ss_dssp EESEEEEE
T ss_pred EcCEEEEC
Confidence 99999954
No 122
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.03 E-value=2.9e-09 Score=104.72 Aligned_cols=45 Identities=44% Similarity=0.573 Sum_probs=41.7
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeec
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTD 70 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~ 70 (520)
.+..+|||||||+|||++|+.|.+.|++|+||||.+.+||.....
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~ 48 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT 48 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence 457899999999999999999999999999999999999988654
No 123
>PLN02697 lycopene epsilon cyclase
Probab=99.02 E-value=8.2e-08 Score=97.38 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=32.6
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
...+||+|||||++||++|..|+++|++|+|+|+.
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 45699999999999999999999999999999984
No 124
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.02 E-value=2.6e-09 Score=107.39 Aligned_cols=37 Identities=49% Similarity=0.751 Sum_probs=33.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCce
Q 010001 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~ 66 (520)
||+|||+|+|||+||..++++|.+|+|+|+.+..||.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~ 37 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGS 37 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccc
Confidence 8999999999999999999999999999999999993
No 125
>PRK09897 hypothetical protein; Provisional
Probab=99.01 E-value=9.1e-09 Score=104.23 Aligned_cols=42 Identities=21% Similarity=0.426 Sum_probs=35.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCC--CcEEEEeccCCCC-ceeee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVG-GRVHT 69 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G--~~V~vlE~~~~~G-G~~~s 69 (520)
+++|+|||||++|+++|..|.+.+ .+|+|||++..+| |...+
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays 45 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYS 45 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeec
Confidence 358999999999999999999874 4899999999888 55543
No 126
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.00 E-value=7.3e-09 Score=105.51 Aligned_cols=42 Identities=43% Similarity=0.551 Sum_probs=37.6
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC--CCcee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR--VGGRV 67 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~--~GG~~ 67 (520)
..++||+|||||++||+||+.++++|.+|+|+|+.+. .||.+
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s 45 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNS 45 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCccc
Confidence 4678999999999999999999999999999999874 57744
No 127
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.99 E-value=1.7e-08 Score=102.16 Aligned_cols=41 Identities=24% Similarity=0.468 Sum_probs=36.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCCCCceeee
Q 010001 29 PSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~--G~~V~vlE~~~~~GG~~~s 69 (520)
+||+||||||+|+++|+.|++. |.+|+|+|+.+.+|...+.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~ 43 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSN 43 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCC
Confidence 5999999999999999999997 9999999998777654443
No 128
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.99 E-value=1.5e-08 Score=102.48 Aligned_cols=39 Identities=41% Similarity=0.642 Sum_probs=36.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhCC-CcEEEEeccCCCCceee
Q 010001 30 SVIVIGAGMAGVAAARALHDAS-FKVVLLESRDRVGGRVH 68 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~~~G-~~V~vlE~~~~~GG~~~ 68 (520)
||+|||||++||+||+.++++| .+|+|+|+.+..||.+.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~ 40 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSA 40 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCccc
Confidence 8999999999999999999999 99999999999888653
No 129
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.98 E-value=5.1e-09 Score=103.84 Aligned_cols=37 Identities=35% Similarity=0.622 Sum_probs=34.6
Q ss_pred EEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 32 IVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 32 ~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
+|||||+|||+||..|+++|++|+|+|+++.+|+.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~ 37 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLL 37 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCcccccccc
Confidence 6999999999999999999999999999999988654
No 130
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.97 E-value=7.6e-09 Score=103.78 Aligned_cols=44 Identities=20% Similarity=0.211 Sum_probs=38.6
Q ss_pred cCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhh
Q 010001 267 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 310 (520)
Q Consensus 267 gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l 310 (520)
...++++++|.+|+.+++++.|.+++|+++.+|.||.|...+..
T Consensus 117 ~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 117 EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence 34689999999999988889999999989999999999887654
No 131
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.95 E-value=2.3e-07 Score=97.19 Aligned_cols=60 Identities=17% Similarity=0.288 Sum_probs=45.7
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhC-CCcEEEEeccCCC--CceeeecCCCCcccccccceecCCCCCCchHHHHHHcC
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRDRV--GGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLG 101 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~-G~~V~vlE~~~~~--GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg 101 (520)
+.+++||+|||||++||++|..|++. |++|+|+|+.+.+ .|++- -+ .....++++.+|
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~--------------gl-----~prtleiL~~lG 89 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQAD--------------GI-----ACRTMEMFQAFG 89 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeee--------------EE-----ChHHHHHHHhcc
Confidence 45679999999999999999999994 9999999997532 12211 11 235678888888
Q ss_pred CC
Q 010001 102 LP 103 (520)
Q Consensus 102 ~~ 103 (520)
+.
T Consensus 90 l~ 91 (634)
T PRK08294 90 FA 91 (634)
T ss_pred ch
Confidence 84
No 132
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.94 E-value=6.7e-09 Score=105.67 Aligned_cols=41 Identities=39% Similarity=0.585 Sum_probs=35.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
++|+|||||+|||++|..|.+.|++|++||+++.+||.-+.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~ 42 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY 42 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence 68999999999999999999999999999999999998764
No 133
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.91 E-value=1.7e-08 Score=103.69 Aligned_cols=43 Identities=21% Similarity=0.209 Sum_probs=38.2
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 308 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 308 (520)
.|++++++++|.+|...++.+.|.+.+|+++.+|.||+|+...
T Consensus 279 ~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 279 YDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred CCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCC
Confidence 3789999999999999888888888888899999999999864
No 134
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.91 E-value=1.9e-08 Score=102.00 Aligned_cols=40 Identities=38% Similarity=0.483 Sum_probs=36.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc-CCCCce
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR-DRVGGR 66 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~-~~~GG~ 66 (520)
..+||+|||||+||+.||+.+++.|++|+++|++ +.+|+.
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m 43 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM 43 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence 4699999999999999999999999999999998 467664
No 135
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.90 E-value=1.7e-08 Score=103.57 Aligned_cols=43 Identities=28% Similarity=0.295 Sum_probs=38.0
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 308 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 308 (520)
.|++++++++|.+|..+++.+.|.+.+|+++.+|++|+|+...
T Consensus 280 ~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 280 YPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred hCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 4789999999999998887788888888889999999999864
No 136
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.88 E-value=5.1e-08 Score=97.67 Aligned_cols=40 Identities=20% Similarity=0.390 Sum_probs=35.6
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCce
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~ 66 (520)
..++||+|||+|.|||+||..++ .|.+|+|+||.+..||.
T Consensus 2 ~~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 2 NLYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN 41 (433)
T ss_pred CccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence 35689999999999999999975 69999999999887774
No 137
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.87 E-value=7.6e-08 Score=98.06 Aligned_cols=44 Identities=27% Similarity=0.452 Sum_probs=40.1
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
|...|||+|||||++|++||..|+++|++|+|+|+. .+||.|..
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 44 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH 44 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence 356799999999999999999999999999999995 88998863
No 138
>PLN02985 squalene monooxygenase
Probab=98.86 E-value=1.2e-06 Score=89.51 Aligned_cols=44 Identities=32% Similarity=0.421 Sum_probs=37.3
Q ss_pred CCCCCCCCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 19 NNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 19 ~~~~~~~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
+...+.....+||+|||||++|+++|..|+++|++|+|+|+...
T Consensus 34 ~~~~~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 34 AVAEERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred hhcccCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 33334456679999999999999999999999999999999643
No 139
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.86 E-value=7.2e-08 Score=99.86 Aligned_cols=43 Identities=44% Similarity=0.736 Sum_probs=39.6
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC--CCCceee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD--RVGGRVH 68 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~--~~GG~~~ 68 (520)
..++||+|||+|.|||+||..++++|.+|+|||+.+ ..||.+.
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 467999999999999999999999999999999999 7888664
No 140
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.85 E-value=4.5e-08 Score=97.65 Aligned_cols=36 Identities=31% Similarity=0.524 Sum_probs=33.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~ 63 (520)
..+|+|||||++||++|..|+++|++|+|+|+.+.+
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 368999999999999999999999999999997643
No 141
>PRK07121 hypothetical protein; Validated
Probab=98.85 E-value=8.3e-08 Score=98.28 Aligned_cols=43 Identities=33% Similarity=0.473 Sum_probs=39.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
..++||+|||||++||+||..++++|.+|+|+||....||...
T Consensus 18 ~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~ 60 (492)
T PRK07121 18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATA 60 (492)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence 3579999999999999999999999999999999998888653
No 142
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.85 E-value=9.9e-08 Score=97.14 Aligned_cols=42 Identities=31% Similarity=0.421 Sum_probs=39.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
.++||+|||||++|++||..|+++|++|+|+|+++.+||.|.
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~ 45 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCT 45 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccccc
Confidence 469999999999999999999999999999999889999874
No 143
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.85 E-value=1.8e-07 Score=91.70 Aligned_cols=37 Identities=32% Similarity=0.662 Sum_probs=34.3
Q ss_pred eEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCCCCce
Q 010001 30 SVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGR 66 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~~~--G~~V~vlE~~~~~GG~ 66 (520)
||+|||||+|||++|+.|+++ |++|+|+|+.+..||.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 899999999999999999997 9999999998877763
No 144
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.84 E-value=3.8e-08 Score=101.85 Aligned_cols=42 Identities=26% Similarity=0.482 Sum_probs=38.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
...+||+|||||+|||+||..|+++|++|+|+|+. .+||.+.
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~ 43 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQIT 43 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEE
Confidence 45699999999999999999999999999999994 7888765
No 145
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.84 E-value=2e-07 Score=97.05 Aligned_cols=45 Identities=31% Similarity=0.406 Sum_probs=41.1
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
...++||+|||+|++|++||..++++|.+|+|+|+++..||.+..
T Consensus 9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~ 53 (581)
T PRK06134 9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAW 53 (581)
T ss_pred CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence 456899999999999999999999999999999999989997753
No 146
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.84 E-value=2.7e-08 Score=102.59 Aligned_cols=41 Identities=24% Similarity=0.188 Sum_probs=36.7
Q ss_pred CeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhh
Q 010001 269 DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 269 ~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
.++++++|.+|+.++++++|.+.+|+++.+|.||.|-..+.
T Consensus 208 ~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S 248 (668)
T PLN02927 208 VIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWS 248 (668)
T ss_pred EEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCc
Confidence 37889999999999999999999998999999999988764
No 147
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.83 E-value=1.3e-07 Score=97.44 Aligned_cols=42 Identities=33% Similarity=0.617 Sum_probs=39.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
..++||+|||+| +||+||...+++|.+|+|+|+.+.+||.+.
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~ 55 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTA 55 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence 458999999999 899999999999999999999999999775
No 148
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.83 E-value=6.4e-09 Score=102.23 Aligned_cols=35 Identities=43% Similarity=0.563 Sum_probs=31.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~ 63 (520)
+||+|||||++||++|..|+++|++|+|||+++.+
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 79999999999999999999999999999997654
No 149
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.83 E-value=8.9e-08 Score=97.26 Aligned_cols=43 Identities=33% Similarity=0.433 Sum_probs=39.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
..+|||+|||||++|++||..|++.|++|+|+|+.+.+||.|.
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL 44 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence 3469999999999999999999999999999999888999874
No 150
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.83 E-value=1.2e-07 Score=95.93 Aligned_cols=41 Identities=41% Similarity=0.553 Sum_probs=38.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
+|||+|||||++|++||..++++|++|+|+|+ +.+||.|..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~ 42 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVI 42 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeec
Confidence 58999999999999999999999999999999 589998863
No 151
>PTZ00367 squalene epoxidase; Provisional
Probab=98.82 E-value=5.1e-07 Score=92.69 Aligned_cols=35 Identities=34% Similarity=0.467 Sum_probs=33.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
.++||+|||||++|+++|..|+++|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 56899999999999999999999999999999964
No 152
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.80 E-value=1.2e-07 Score=99.44 Aligned_cols=39 Identities=33% Similarity=0.515 Sum_probs=35.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG 65 (520)
.++||+|||||+|||+||..+++.|.+|+|+|+...+||
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~ 72 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRR 72 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence 468999999999999999999999999999999777754
No 153
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.78 E-value=9.8e-08 Score=97.10 Aligned_cols=42 Identities=29% Similarity=0.377 Sum_probs=38.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
.++||+|||||++|++||..|+++|++|+|+|+ ..+||.|..
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~-~~~GG~c~~ 44 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEK-KYWGGVCLN 44 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceec
Confidence 359999999999999999999999999999998 478998854
No 154
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.78 E-value=1.3e-07 Score=93.94 Aligned_cols=36 Identities=36% Similarity=0.578 Sum_probs=33.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
+++||+|||||++||++|..|+++|++|+|+|+.+.
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 358999999999999999999999999999999874
No 155
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.78 E-value=9.3e-09 Score=102.95 Aligned_cols=40 Identities=45% Similarity=0.600 Sum_probs=33.9
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
||+|||||++|++||..+++.|.+|+|+|+.+.+||...+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~ 40 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATS 40 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceE
Confidence 8999999999999999999999999999999999997643
No 156
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.77 E-value=4e-08 Score=94.37 Aligned_cols=40 Identities=33% Similarity=0.297 Sum_probs=33.5
Q ss_pred cCCeecCceeEEEEEeCCeE-EEEEcCCcEEEcCEEEEecCh
Q 010001 267 GLDIRLGHRVTKITRHYIGV-KVTVEGGKTFVADAVVVAVPL 307 (520)
Q Consensus 267 gv~i~~~~~V~~I~~~~~~v-~V~~~~g~~~~ad~VI~a~p~ 307 (520)
+++|+ ..+|.+|..+++++ .|.+.+|+++.+|.||+|+.+
T Consensus 110 nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 110 NLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp TEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 56774 68899999999886 799999999999999999987
No 157
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.76 E-value=2.4e-07 Score=96.51 Aligned_cols=44 Identities=32% Similarity=0.475 Sum_probs=40.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
..++||+|||||++||+||..++++|.+|+|+||....||.+..
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~~ 50 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAF 50 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccce
Confidence 45789999999999999999999999999999999999987653
No 158
>PRK10262 thioredoxin reductase; Provisional
Probab=98.74 E-value=1.2e-07 Score=91.59 Aligned_cols=43 Identities=26% Similarity=0.468 Sum_probs=38.2
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
....+||+|||||++||+||..|+++|++|+|||+ ...||.+.
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~-~~~gg~~~ 45 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLT 45 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEe-ecCCCcee
Confidence 35789999999999999999999999999999996 46788664
No 159
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.74 E-value=2.3e-07 Score=95.03 Aligned_cols=39 Identities=26% Similarity=0.595 Sum_probs=35.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
.+||+|||+|+|||+||..+++ |.+|+|+|+.+..||.+
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s 41 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNS 41 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence 5799999999999999999976 99999999998877754
No 160
>PRK12839 hypothetical protein; Provisional
Probab=98.74 E-value=5.8e-07 Score=93.05 Aligned_cols=45 Identities=29% Similarity=0.434 Sum_probs=41.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
++..+||+|||+|++||+||+.|+++|.+|+|+|+...+||.+..
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~ 49 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAW 49 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccc
Confidence 456899999999999999999999999999999999999998753
No 161
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.73 E-value=3.5e-07 Score=95.85 Aligned_cols=40 Identities=30% Similarity=0.326 Sum_probs=36.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCce
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~ 66 (520)
.++||+|||||+|||+||..++++|.+|+|+|+....||.
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~ 46 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAH 46 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCc
Confidence 4689999999999999999999999999999998866553
No 162
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.72 E-value=1.4e-06 Score=83.16 Aligned_cols=50 Identities=28% Similarity=0.259 Sum_probs=41.9
Q ss_pred hHHHHHHHh-ccCCeecCceeEEEEEeCCeE-EEEEcCCcEEEcCEEEEecC
Q 010001 257 YLPVINTLA-KGLDIRLGHRVTKITRHYIGV-KVTVEGGKTFVADAVVVAVP 306 (520)
Q Consensus 257 ~~~l~~~L~-~gv~i~~~~~V~~I~~~~~~v-~V~~~~g~~~~ad~VI~a~p 306 (520)
+..+.+.|. .|++|+++++|..|+.+++.+ .|.+++|.++.+|+||+|..
T Consensus 176 vkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~G 227 (486)
T COG2509 176 VKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPG 227 (486)
T ss_pred HHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccC
Confidence 344555555 489999999999999999864 68899999999999999985
No 163
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.71 E-value=3.5e-06 Score=79.73 Aligned_cols=36 Identities=44% Similarity=0.794 Sum_probs=33.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~ 63 (520)
+.+|+||||||+||++|..|.|+|++|+|+|+...+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 569999999999999999999999999999997544
No 164
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.71 E-value=3.5e-07 Score=95.20 Aligned_cols=39 Identities=21% Similarity=0.465 Sum_probs=34.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCC--CcEEEEeccCCCCce
Q 010001 28 SPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGR 66 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G--~~V~vlE~~~~~GG~ 66 (520)
++||+|||||+|||+||..++++| .+|+|+|+....||.
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~ 43 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSH 43 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchh
Confidence 579999999999999999999874 799999998776664
No 165
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.71 E-value=4.9e-07 Score=93.28 Aligned_cols=41 Identities=29% Similarity=0.464 Sum_probs=37.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCce
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~ 66 (520)
..++||+|||||+|||+||..+++.|.+|+|+||....||.
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~ 54 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS 54 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence 35789999999999999999999999999999999887764
No 166
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.71 E-value=4.3e-07 Score=92.75 Aligned_cols=39 Identities=41% Similarity=0.542 Sum_probs=35.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
.+||+|||||+|||+||..+++.|. |+|+|+.+..||.+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s 40 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNS 40 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcc
Confidence 4799999999999999999999997 99999998777744
No 167
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.68 E-value=7e-07 Score=90.58 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=32.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
++||+|||||+|||+||..++++|.+|+|+|+..
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3799999999999999999999999999999975
No 168
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.68 E-value=7.1e-07 Score=93.30 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=36.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
.++||+|||||+|||+||..++++|.+|+|+|+....||.+
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s 89 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHT 89 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCch
Confidence 35799999999999999999999999999999988776643
No 169
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.66 E-value=6.5e-07 Score=93.29 Aligned_cols=41 Identities=24% Similarity=0.430 Sum_probs=37.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCC---CcEEEEeccCCCCcee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDAS---FKVVLLESRDRVGGRV 67 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G---~~V~vlE~~~~~GG~~ 67 (520)
.++||+|||||+|||+||..++++| .+|+|+|+....||.+
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s 47 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS 47 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence 4689999999999999999999998 8999999998777744
No 170
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.64 E-value=1.2e-06 Score=91.14 Aligned_cols=44 Identities=45% Similarity=0.554 Sum_probs=40.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
..++||+|||+|.+||+||..++++|++|+|+|+++.+||.+..
T Consensus 14 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~ 57 (578)
T PRK12843 14 DAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTAT 57 (578)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccc
Confidence 45689999999999999999999999999999999999997653
No 171
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.64 E-value=9e-07 Score=91.63 Aligned_cols=40 Identities=28% Similarity=0.314 Sum_probs=34.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC-CCcee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR-VGGRV 67 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~-~GG~~ 67 (520)
..+||+|||||.|||+||..+ +.|.+|+|+|+... .||.+
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s 46 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCT 46 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccc
Confidence 468999999999999999999 88999999999865 44543
No 172
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.63 E-value=3.3e-07 Score=92.34 Aligned_cols=35 Identities=46% Similarity=0.669 Sum_probs=31.2
Q ss_pred EEcCCHHHHHHHHHHHhCCCcEEEEeccCC--CCcee
Q 010001 33 VIGAGMAGVAAARALHDASFKVVLLESRDR--VGGRV 67 (520)
Q Consensus 33 IIGaGisGLsaA~~L~~~G~~V~vlE~~~~--~GG~~ 67 (520)
|||+|++||+||..++++|.+|+|+||.+. .||..
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~s 37 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGNA 37 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcCc
Confidence 799999999999999999999999999874 45543
No 173
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.63 E-value=9.2e-07 Score=91.97 Aligned_cols=41 Identities=29% Similarity=0.395 Sum_probs=36.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCCCCcee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRV 67 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~--G~~V~vlE~~~~~GG~~ 67 (520)
.++||+|||||+|||+||..++++ |.+|+|+||....||.+
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s 45 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHT 45 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCh
Confidence 468999999999999999999987 47999999988777744
No 174
>PLN02815 L-aspartate oxidase
Probab=98.63 E-value=9.3e-07 Score=91.56 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=36.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
..++||+|||||+|||+||..+++.| +|+|+|+....||..
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s 67 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNT 67 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcH
Confidence 34689999999999999999999999 999999998877743
No 175
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.63 E-value=2.9e-07 Score=91.21 Aligned_cols=63 Identities=21% Similarity=0.080 Sum_probs=47.7
Q ss_pred ccCCccccccCh---HHHHHHHh-----ccCCeecCceeEEEEEeCCe-EEEEEcCCcEEEcCEEEEecChhh
Q 010001 246 LPGGHGLMVRGY---LPVINTLA-----KGLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 246 ~~~g~~~~~~G~---~~l~~~L~-----~gv~i~~~~~V~~I~~~~~~-v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
+.++.+.+.+|. ..++.+|+ .|+.|+.||+|++|....++ +.|+|..| .+++.+||.|+..+.
T Consensus 172 v~g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 172 VYGGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred heeeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHH
Confidence 344555555552 33444443 38899999999999987766 58999999 899999999998775
No 176
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.63 E-value=6.2e-07 Score=92.44 Aligned_cols=41 Identities=27% Similarity=0.358 Sum_probs=36.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
+.++||+|||||+|||+||..++ .|.+|+|+||.+..||.+
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s 47 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSAS 47 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCch
Confidence 46789999999999999999996 499999999998877743
No 177
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.62 E-value=4.5e-07 Score=91.15 Aligned_cols=56 Identities=41% Similarity=0.631 Sum_probs=37.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhCC---CcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcCCC
Q 010001 30 SVIVIGAGMAGVAAARALHDAS---FKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLP 103 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~~~G---~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~ 103 (520)
||+|||||.||..+|..|++.+ ++|+|+|+...+ ++..|-... +.+..+++.||++
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~------------~~~vGe~~~------p~~~~~~~~lgi~ 59 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP------------RIGVGESTL------PSLRPFLRRLGID 59 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS---------------SSEEE--------THHHHCHHHHT--
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC------------CCCccccch------HHHHHHHHHcCCC
Confidence 7999999999999999999998 899999996542 122333322 3466788888886
No 178
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.62 E-value=1.3e-06 Score=91.23 Aligned_cols=39 Identities=28% Similarity=0.478 Sum_probs=34.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCCCCc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGG 65 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~--G~~V~vlE~~~~~GG 65 (520)
.++||+|||||+|||+||..++++ |.+|+|+|+....++
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s 50 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRS 50 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCC
Confidence 358999999999999999999998 999999999876443
No 179
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.61 E-value=1.3e-06 Score=90.54 Aligned_cols=40 Identities=33% Similarity=0.404 Sum_probs=35.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCCCCcee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRV 67 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~--G~~V~vlE~~~~~GG~~ 67 (520)
++||+|||||+|||+||..++++ |.+|+|+||....||.+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s 44 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT 44 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence 57999999999999999999987 57999999998877744
No 180
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.59 E-value=9.2e-07 Score=92.45 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=37.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
.++||+|||||+|||+||..++++|.+|+|+||....||.+
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t 68 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHT 68 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCc
Confidence 46899999999999999999999999999999988766644
No 181
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.58 E-value=1.2e-06 Score=91.13 Aligned_cols=41 Identities=29% Similarity=0.328 Sum_probs=37.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
.++||+|||||+|||+||..++++|.+|+|+|+....||.+
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t 46 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHT 46 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCcc
Confidence 46899999999999999999999999999999987777643
No 182
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.58 E-value=1.5e-06 Score=90.56 Aligned_cols=35 Identities=37% Similarity=0.519 Sum_probs=32.2
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCc
Q 010001 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (520)
Q Consensus 31 v~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG 65 (520)
|+|||||+|||+||..++++|.+|+|+|+...+||
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~ 35 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRR 35 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCC
Confidence 69999999999999999999999999999885654
No 183
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.58 E-value=1.8e-06 Score=96.66 Aligned_cols=43 Identities=35% Similarity=0.585 Sum_probs=39.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
..++||+|||||.|||+||...+++|.+|+|+||....||.+.
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 4579999999999999999999999999999999999998653
No 184
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.57 E-value=2.8e-06 Score=88.50 Aligned_cols=41 Identities=27% Similarity=0.376 Sum_probs=36.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
..+||+|||||+|||+||..+++.|.+|+|+|+....||.+
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t 51 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHT 51 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence 46899999999999999999999999999999987766644
No 185
>PRK08275 putative oxidoreductase; Provisional
Probab=98.57 E-value=1.1e-06 Score=91.24 Aligned_cols=39 Identities=31% Similarity=0.473 Sum_probs=34.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCCCCc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGG 65 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~--G~~V~vlE~~~~~GG 65 (520)
..+||+|||||+|||+||..++++ |.+|+|+|+....+|
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~ 48 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRS 48 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCC
Confidence 468999999999999999999987 689999999876433
No 186
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=98.57 E-value=1.6e-06 Score=83.77 Aligned_cols=100 Identities=22% Similarity=0.244 Sum_probs=69.2
Q ss_pred hhhhHHHHHHHHHHhh-hhhhcCCccccccc-ccCccccccCCccccccChHHHHHHHh--ccCCeecCceeEEE-EEeC
Q 010001 209 LEGLAHKVLQWYLCRM-EGWFAADAETISLK-SWDKEELLPGGHGLMVRGYLPVINTLA--KGLDIRLGHRVTKI-TRHY 283 (520)
Q Consensus 209 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~G~~~l~~~L~--~gv~i~~~~~V~~I-~~~~ 283 (520)
..++++.+++.+.... ..-|+++. .+..- .+....-..+|.+.+.||...+++.|. .+.++ ++++|++| ...+
T Consensus 78 ~~gi~~~fi~Elv~a~tRvNYgQ~~-~i~a~~G~vSla~a~~gl~sV~GGN~qI~~~ll~~S~A~v-l~~~Vt~I~~~~~ 155 (368)
T PF07156_consen 78 ENGISERFINELVQAATRVNYGQNV-NIHAFAGLVSLAGATGGLWSVEGGNWQIFEGLLEASGANV-LNTTVTSITRRSS 155 (368)
T ss_pred HCCCCHHHHHHHHHhheEeeccccc-chhhhhhheeeeeccCCceEecCCHHHHHHHHHHHccCcE-ecceeEEEEeccC
Confidence 7899999998888776 44677753 33222 222222235678899999999999996 48899 99999999 4444
Q ss_pred Ce---EEEEEcC--Cc-EEEcCEEEEecChhhh
Q 010001 284 IG---VKVTVEG--GK-TFVADAVVVAVPLGVL 310 (520)
Q Consensus 284 ~~---v~V~~~~--g~-~~~ad~VI~a~p~~~l 310 (520)
+. +.|.+.+ +. .-.+|.||+|+|++.-
T Consensus 156 ~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~ 188 (368)
T PF07156_consen 156 DGYSLYEVTYKSSSGTESDEYDIVVIATPLQQS 188 (368)
T ss_pred CCceeEEEEEecCCCCccccCCEEEECCCcccc
Confidence 43 4565443 22 3457999999999643
No 187
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.56 E-value=8.1e-08 Score=104.22 Aligned_cols=44 Identities=30% Similarity=0.504 Sum_probs=41.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
+..++|+|||||+|||+||++|+++|++|+|||+.+.+||.++.
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~y 347 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRY 347 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEc
Confidence 35789999999999999999999999999999999999999863
No 188
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.56 E-value=1.6e-06 Score=90.55 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=36.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCce
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~ 66 (520)
.++||+|||||+|||+||..+++.|.+|+|+||....||.
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~ 50 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH 50 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence 4689999999999999999999999999999998766664
No 189
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.54 E-value=2.1e-06 Score=90.21 Aligned_cols=40 Identities=25% Similarity=0.342 Sum_probs=36.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCce
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~ 66 (520)
..+||+|||||+|||+||..++++|.+|+|+|+....+|.
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~ 43 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSH 43 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcc
Confidence 4689999999999999999999999999999998776653
No 190
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.54 E-value=1.2e-06 Score=89.77 Aligned_cols=34 Identities=29% Similarity=0.426 Sum_probs=31.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
.+.||+|||||+|||+||..++ |.+|+|+|+...
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 5789999999999999999996 579999999886
No 191
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.52 E-value=1.2e-07 Score=102.14 Aligned_cols=44 Identities=36% Similarity=0.552 Sum_probs=40.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
...+||+|||||+|||+||++|+++|++|+|||+.+.+||.++.
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence 34689999999999999999999999999999999999999864
No 192
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.52 E-value=1.5e-07 Score=94.23 Aligned_cols=45 Identities=27% Similarity=0.310 Sum_probs=41.0
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHh--CCCcEEEEeccCCCCceeee
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHD--ASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~--~G~~V~vlE~~~~~GG~~~s 69 (520)
....++|+|||||+|||+||+.|++ .|++|+|||+.+.+||.++.
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 3456899999999999999999997 69999999999999998874
No 193
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.51 E-value=3.5e-06 Score=87.89 Aligned_cols=39 Identities=23% Similarity=0.264 Sum_probs=34.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCc
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG 65 (520)
...+||+|||||+|||+||..+++. .+|+|+|+....||
T Consensus 3 ~~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 3 QHRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred ceeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 3568999999999999999999986 89999999876555
No 194
>PRK12831 putative oxidoreductase; Provisional
Probab=98.49 E-value=2e-07 Score=94.27 Aligned_cols=44 Identities=30% Similarity=0.520 Sum_probs=41.1
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
..+.+||+|||||++||+||++|++.|++|+|+|+.+.+||.+.
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 35678999999999999999999999999999999999999885
No 195
>PRK06116 glutathione reductase; Validated
Probab=98.47 E-value=1.4e-07 Score=95.74 Aligned_cols=43 Identities=35% Similarity=0.561 Sum_probs=39.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
+.++||+|||||++|++||..|+++|++|+|+|+. .+||.|..
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n 44 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVN 44 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhc
Confidence 35699999999999999999999999999999995 89998743
No 196
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.47 E-value=3.8e-06 Score=76.22 Aligned_cols=40 Identities=35% Similarity=0.606 Sum_probs=36.9
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
-|+|||+|++||+|+..|...|-.|+++|++.-+||...-
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiK 50 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIK 50 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCccee
Confidence 5999999999999999999998889999999999997643
No 197
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.45 E-value=1.8e-07 Score=95.00 Aligned_cols=42 Identities=33% Similarity=0.484 Sum_probs=39.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
+|||+|||||++|++||..++++|++|+|+|+++.+||.|..
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~ 44 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLN 44 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeecc
Confidence 489999999999999999999999999999988899999843
No 198
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.43 E-value=2.4e-07 Score=94.39 Aligned_cols=41 Identities=34% Similarity=0.506 Sum_probs=38.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
.|||+|||||++|++||+.|+++|++|+|+|+ +.+||.|..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~ 41 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN 41 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence 38999999999999999999999999999999 899998864
No 199
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.43 E-value=6.1e-06 Score=83.87 Aligned_cols=40 Identities=25% Similarity=0.424 Sum_probs=36.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
.||+|||||.+|++||..++++|++|+|+|+. .+||.|-.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~ 41 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVL 41 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcccc
Confidence 58999999999999999999999999999986 58998853
No 200
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.42 E-value=2.3e-07 Score=93.70 Aligned_cols=41 Identities=32% Similarity=0.561 Sum_probs=38.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
+|||+|||||++|++||..|++.|++|+|+|+ +.+||.|..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~-~~~GG~c~~ 42 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEA-KKLGGTCVN 42 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecc-cccccceec
Confidence 58999999999999999999999999999999 578998854
No 201
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.42 E-value=3.3e-07 Score=98.25 Aligned_cols=44 Identities=41% Similarity=0.542 Sum_probs=41.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
...++|+|||||+|||+||+.|+++|++|+|+|+.+.+||.++.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 45689999999999999999999999999999999999998864
No 202
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.42 E-value=2.6e-07 Score=93.27 Aligned_cols=42 Identities=38% Similarity=0.470 Sum_probs=38.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC-CCceeee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR-VGGRVHT 69 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~-~GG~~~s 69 (520)
+|||+|||||++|++||..|++.|++|+|+|+++. +||.|..
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~ 45 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCIN 45 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeec
Confidence 59999999999999999999999999999999864 6998753
No 203
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.40 E-value=3e-07 Score=93.60 Aligned_cols=42 Identities=36% Similarity=0.475 Sum_probs=38.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
..|||+|||||++|++||..|+++|++|+|+|+.. +||.|..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~ 44 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN 44 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence 56999999999999999999999999999999976 9998854
No 204
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.39 E-value=3.7e-07 Score=92.33 Aligned_cols=42 Identities=31% Similarity=0.494 Sum_probs=38.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC-CCCceeee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD-RVGGRVHT 69 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~-~~GG~~~s 69 (520)
.|||+|||||++|++||.+|+++|++|+|+|+.+ .+||.|..
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~ 45 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCIN 45 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence 5899999999999999999999999999999976 47998864
No 205
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=98.39 E-value=9.6e-07 Score=81.66 Aligned_cols=55 Identities=29% Similarity=0.398 Sum_probs=44.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhC----CCcEEEEeccCCCCceeeecC--CCCcccccc
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRDRVGGRVHTDY--SFGFPVDLG 80 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~----G~~V~vlE~~~~~GG~~~s~~--~~g~~~d~G 80 (520)
-.++.+-|||||+|||++|.+|.+. |.++.|+|.-+..||..-... .+|+...-|
T Consensus 20 VdqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~RGG 80 (587)
T COG4716 20 VDQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVVRGG 80 (587)
T ss_pred cccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceeecCc
Confidence 3568899999999999999999997 569999999999999875432 245655433
No 206
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.38 E-value=7.2e-06 Score=83.40 Aligned_cols=39 Identities=38% Similarity=0.382 Sum_probs=34.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
+||+|||||++|+.||..+++.|.+|+|+|++...+|.+
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~ 39 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKC 39 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCC
Confidence 699999999999999999999999999999975555544
No 207
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.37 E-value=6e-07 Score=88.60 Aligned_cols=44 Identities=25% Similarity=0.286 Sum_probs=39.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHH-hCCCcEEEEeccCCCCceeee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALH-DASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~-~~G~~V~vlE~~~~~GG~~~s 69 (520)
..+++|+|||||+|||+||.+|. +.|++|+|||+.+.+||.++.
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 35679999999999999999765 569999999999999999986
No 208
>PRK06370 mercuric reductase; Validated
Probab=98.37 E-value=4.2e-07 Score=92.45 Aligned_cols=44 Identities=36% Similarity=0.459 Sum_probs=39.1
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
|..++||+|||||++|++||..|+++|++|+|+|+. .+||.|..
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 45 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVN 45 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceec
Confidence 345699999999999999999999999999999985 67888754
No 209
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.36 E-value=4.3e-07 Score=85.10 Aligned_cols=44 Identities=32% Similarity=0.580 Sum_probs=39.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhC------CCcEEEEeccCCCCceeee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDA------SFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~------G~~V~vlE~~~~~GG~~~s 69 (520)
...+||+|||||+|||+||.+|.+. ..+|+|+|+...+||.+-|
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS 123 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS 123 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec
Confidence 5679999999999999999999874 3589999999999998865
No 210
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.35 E-value=4.3e-07 Score=86.83 Aligned_cols=44 Identities=48% Similarity=0.735 Sum_probs=40.7
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
....+++|||||+||++||..|++.|++|.++|+++.+||++..
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak 165 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAK 165 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHh
Confidence 34679999999999999999999999999999999999999754
No 211
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.35 E-value=1.7e-05 Score=81.97 Aligned_cols=41 Identities=27% Similarity=0.410 Sum_probs=36.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
...+||+|||+|+|||+||..+++. .+|+|+||....||.+
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t 46 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGST 46 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCCh
Confidence 3568999999999999999999986 8999999998877743
No 212
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.34 E-value=5.9e-07 Score=98.53 Aligned_cols=43 Identities=33% Similarity=0.434 Sum_probs=40.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
..++|+|||||+|||+||++|+++|++|+|||+.+.+||.++.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~ 471 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY 471 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec
Confidence 4689999999999999999999999999999999999998763
No 213
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.33 E-value=5.2e-07 Score=89.65 Aligned_cols=37 Identities=35% Similarity=0.481 Sum_probs=33.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCc
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG 65 (520)
+||+|||||++|++||+.|+++|++|+|+|++...+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~ 37 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAK 37 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCC
Confidence 6999999999999999999999999999999765443
No 214
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.33 E-value=2.6e-05 Score=75.51 Aligned_cols=41 Identities=20% Similarity=0.395 Sum_probs=36.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCCCCcee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRV 67 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~--G~~V~vlE~~~~~GG~~ 67 (520)
+++||++|||||.|-+.++.|++. ..+|.|+|+.+.++.-.
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~ES 44 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALES 44 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhhc
Confidence 578999999999999999999997 67999999988776543
No 215
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.32 E-value=7e-07 Score=94.52 Aligned_cols=44 Identities=30% Similarity=0.471 Sum_probs=40.7
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
...++|+|||||++||+||+.|++.|++|+|||+.+.+||.++.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~ 368 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF 368 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence 35689999999999999999999999999999999999998764
No 216
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.32 E-value=9.2e-05 Score=68.06 Aligned_cols=38 Identities=29% Similarity=0.442 Sum_probs=34.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhC----CCcEEEEeccCCC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRDRV 63 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~----G~~V~vlE~~~~~ 63 (520)
+..+||+|||||.+|++.|+-|.++ |.+|+|+|+.+..
T Consensus 84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred ccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 3579999999999999999999985 7999999998754
No 217
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.32 E-value=8.4e-07 Score=89.56 Aligned_cols=43 Identities=40% Similarity=0.552 Sum_probs=40.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
...+||+|||||++||+||+.|+++|++|+|+|+.+.+||.+.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 3568999999999999999999999999999999999999875
No 218
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.31 E-value=6.1e-07 Score=91.34 Aligned_cols=41 Identities=44% Similarity=0.541 Sum_probs=38.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
++|||+|||||++|++||..|++.|++|+|+|+ +.+||.|.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 358999999999999999999999999999999 78899875
No 219
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.30 E-value=1e-06 Score=94.94 Aligned_cols=43 Identities=30% Similarity=0.533 Sum_probs=40.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
...+||+|||||+|||+||++|+++|++|+|||+.+.+||.++
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 4578999999999999999999999999999999999999875
No 220
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.30 E-value=7.7e-07 Score=90.95 Aligned_cols=50 Identities=22% Similarity=0.159 Sum_probs=39.6
Q ss_pred HHHHHHHh-ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecCh
Q 010001 258 LPVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 307 (520)
Q Consensus 258 ~~l~~~L~-~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 307 (520)
..+.+.|. .|+++++++.|.+|+..++.+.|.+.+|+++.+|.||+|+..
T Consensus 226 ~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~ 276 (499)
T PTZ00052 226 EKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGR 276 (499)
T ss_pred HHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCC
Confidence 34445554 589999999999998776667777778888999999999854
No 221
>PTZ00058 glutathione reductase; Provisional
Probab=98.28 E-value=8.6e-07 Score=91.07 Aligned_cols=43 Identities=37% Similarity=0.483 Sum_probs=39.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
.++|||+|||||.+|++||..+++.|.+|+|+|+. .+||.|-.
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln 88 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN 88 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc
Confidence 46799999999999999999999999999999995 79998854
No 222
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.28 E-value=9.7e-07 Score=87.64 Aligned_cols=44 Identities=39% Similarity=0.445 Sum_probs=41.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
....+|+|||||++||+||+.|+++|++|+|+|+.+.+||++..
T Consensus 121 ~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y 164 (457)
T COG0493 121 RTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY 164 (457)
T ss_pred CCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence 44589999999999999999999999999999999999999975
No 223
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.28 E-value=8.6e-07 Score=90.34 Aligned_cols=44 Identities=32% Similarity=0.480 Sum_probs=38.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEec------cCCCCceeee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLES------RDRVGGRVHT 69 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~------~~~~GG~~~s 69 (520)
..+||++|||||++|++||.+++++|.+|+|+|+ ...+||.|..
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n 51 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLN 51 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcccc
Confidence 3579999999999999999999999999999998 3677887753
No 224
>PRK14727 putative mercuric reductase; Provisional
Probab=98.27 E-value=1.1e-06 Score=89.56 Aligned_cols=44 Identities=30% Similarity=0.406 Sum_probs=41.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
+.++||+|||||++|++||..|++.|.+|+|+|+.+.+||.|..
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n 57 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN 57 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence 46799999999999999999999999999999998899999864
No 225
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.26 E-value=9.1e-07 Score=90.09 Aligned_cols=40 Identities=28% Similarity=0.428 Sum_probs=36.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
|||+|||||++|++||..|+++|++|+|+|+.. +||.|-.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n 40 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVN 40 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeee
Confidence 699999999999999999999999999999965 8888753
No 226
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.26 E-value=1.4e-06 Score=88.66 Aligned_cols=44 Identities=41% Similarity=0.610 Sum_probs=40.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
...++|+|||||++||+||..|+++|++|+|+|+.+.+||.++.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~ 184 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRY 184 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeee
Confidence 35689999999999999999999999999999999999998753
No 227
>PRK14694 putative mercuric reductase; Provisional
Probab=98.25 E-value=1.1e-06 Score=89.53 Aligned_cols=42 Identities=29% Similarity=0.441 Sum_probs=38.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
..+||+|||||++|++||..|++.|++|+|+|+. .+||.|..
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n 46 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN 46 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec
Confidence 5799999999999999999999999999999995 78998864
No 228
>PRK13748 putative mercuric reductase; Provisional
Probab=98.24 E-value=1e-06 Score=92.05 Aligned_cols=42 Identities=36% Similarity=0.474 Sum_probs=38.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
.++||+|||||++|++||..|+++|.+|+|+|++ .+||.|..
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n 138 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVN 138 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccc
Confidence 4699999999999999999999999999999996 89998853
No 229
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.24 E-value=6.8e-06 Score=83.35 Aligned_cols=43 Identities=23% Similarity=0.374 Sum_probs=34.9
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEc-CCcEEE--cCEEEEecChh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVE-GGKTFV--ADAVVVAVPLG 308 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~-~g~~~~--ad~VI~a~p~~ 308 (520)
.|++++++++|.+|..+++.+.+... +|+++. +|++|+|+...
T Consensus 69 ~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 69 SGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred CCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCC
Confidence 58899999999999998888777642 355666 99999999754
No 230
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.23 E-value=1.8e-06 Score=91.01 Aligned_cols=44 Identities=30% Similarity=0.493 Sum_probs=40.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
...++|+|||||++||+||+.|++.|++|+|+|+++.+||.++.
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~ 234 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRY 234 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee
Confidence 34689999999999999999999999999999999999998753
No 231
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=3.4e-05 Score=72.52 Aligned_cols=45 Identities=27% Similarity=0.365 Sum_probs=41.7
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeec
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTD 70 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~ 70 (520)
.+.+||+|+|.|+.-...+..|+..|.+|+.+|+++..||-.+|.
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasl 46 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASL 46 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccce
Confidence 345999999999999999999999999999999999999998884
No 232
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.22 E-value=1.4e-06 Score=92.34 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=36.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCce
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~ 66 (520)
...++|+|||||+|||+||++|++.||+|+|+|+.+..|+.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 45789999999999999999999999999999998765553
No 233
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.22 E-value=1.7e-06 Score=87.80 Aligned_cols=43 Identities=40% Similarity=0.665 Sum_probs=40.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
...++|+|||||++||++|+.|+++|++|+|+|+++.+||...
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 4568999999999999999999999999999999999999765
No 234
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.22 E-value=1.4e-06 Score=89.48 Aligned_cols=41 Identities=34% Similarity=0.575 Sum_probs=37.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
.++||+||||| +||+||+.+++.|.+|+|+|+....||.+.
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~ 46 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTA 46 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCccee
Confidence 47899999999 999999999999999999999998888653
No 235
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.21 E-value=1.9e-06 Score=87.32 Aligned_cols=44 Identities=36% Similarity=0.546 Sum_probs=40.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
++.++|+|||||++||+||+.|+++|++|+|+|+.+.+||.++.
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~ 182 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTF 182 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeee
Confidence 35689999999999999999999999999999999999998763
No 236
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.21 E-value=1.8e-06 Score=90.99 Aligned_cols=43 Identities=37% Similarity=0.552 Sum_probs=40.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
..++|+|||||++||++|+.|+++|++|+|||+.+.+||.++.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~ 351 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTF 351 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeec
Confidence 4789999999999999999999999999999999999998763
No 237
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.21 E-value=1.7e-06 Score=84.20 Aligned_cols=37 Identities=41% Similarity=0.413 Sum_probs=33.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~G 64 (520)
..||+|||||++|+.||+.|+++|++|+|+|+.+...
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence 4699999999999999999999999999999877543
No 238
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.20 E-value=3.8e-05 Score=76.17 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=45.1
Q ss_pred hHHHHHHHhccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhh
Q 010001 257 YLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 310 (520)
Q Consensus 257 ~~~l~~~L~~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l 310 (520)
+..+.+++.+|++++.+++|.+|+.+++++.|++.+|..+.||+||+|+.++..
T Consensus 138 ~~~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 138 CRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred HHHHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence 455555555589999999999999988889999999977999999999987753
No 239
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.18 E-value=9.8e-06 Score=73.45 Aligned_cols=45 Identities=29% Similarity=0.454 Sum_probs=39.1
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCCCCceeee
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~--G~~V~vlE~~~~~GG~~~s 69 (520)
...++|++|||||+.||+.|+.|.-+ +.+|.|+|+...++=..++
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSg 91 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSG 91 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecc
Confidence 45789999999999999999999987 8999999999887655443
No 240
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.18 E-value=4.5e-05 Score=83.70 Aligned_cols=37 Identities=35% Similarity=0.423 Sum_probs=34.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
..++||+|||||.+||+||..+++.|.+|+|+|+...
T Consensus 11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 11 RLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 3568999999999999999999999999999999774
No 241
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.18 E-value=2.3e-06 Score=84.98 Aligned_cols=44 Identities=39% Similarity=0.551 Sum_probs=41.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
..+||++|||||.+|.+||..+++.|.+|.++|+...+||.|-.
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln 45 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLN 45 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEe
Confidence 46799999999999999999999999999999998899999964
No 242
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.18 E-value=5.6e-07 Score=76.43 Aligned_cols=66 Identities=27% Similarity=0.538 Sum_probs=49.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcCCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLP 103 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~--G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~ 103 (520)
.-||+|||||-+||+|||+++++ ..+|.|+|++--+||.++- |++.|....-.....-+++++|++
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWL----------GGQLFSAMvvRKPAhLFL~Eigvp 143 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWL----------GGQLFSAMVVRKPAHLFLQEIGVP 143 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccc----------cchhhhhhhhcChHHHHHHHhCCC
Confidence 35999999999999999999977 5799999999999987652 333332111223455678899986
No 243
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.17 E-value=2.1e-06 Score=89.60 Aligned_cols=44 Identities=41% Similarity=0.585 Sum_probs=41.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
...++|+|||+|++||+||-.|.|.||.|+|+|+++++||.+..
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence 45689999999999999999999999999999999999998864
No 244
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.17 E-value=2.2e-06 Score=88.81 Aligned_cols=42 Identities=33% Similarity=0.616 Sum_probs=39.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
.++||+|||+|++||+||..++++|.+|+|||+....||.+.
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~ 46 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTA 46 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceec
Confidence 478999999999999999999999999999999988888653
No 245
>PLN02507 glutathione reductase
Probab=98.17 E-value=2.1e-06 Score=87.79 Aligned_cols=44 Identities=36% Similarity=0.363 Sum_probs=39.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEec---------cCCCCceeee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLES---------RDRVGGRVHT 69 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~---------~~~~GG~~~s 69 (520)
..+|||+|||||++|++||..+++.|.+|+|+|+ .+.+||.|-.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n 75 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVI 75 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeec
Confidence 3469999999999999999999999999999996 3678998854
No 246
>PRK07846 mycothione reductase; Reviewed
Probab=98.14 E-value=3.1e-05 Score=78.30 Aligned_cols=39 Identities=21% Similarity=0.350 Sum_probs=33.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
+||++|||||++|.+||.. ++|.+|+|+|+ +.+||.|-.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n 39 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLN 39 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccC
Confidence 4899999999999999876 46999999998 578998853
No 247
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.13 E-value=3.4e-06 Score=87.70 Aligned_cols=43 Identities=26% Similarity=0.458 Sum_probs=39.1
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
...++||+|||+|++||+||..++++|.+|+|||+....||.+
T Consensus 8 ~~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t 50 (584)
T PRK12835 8 FDREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGST 50 (584)
T ss_pred ccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchH
Confidence 3457999999999999999999999999999999999888843
No 248
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.11 E-value=4.5e-05 Score=74.18 Aligned_cols=41 Identities=24% Similarity=0.390 Sum_probs=34.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhC--C-CcEEEEeccCCCCceee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDA--S-FKVVLLESRDRVGGRVH 68 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~--G-~~V~vlE~~~~~GG~~~ 68 (520)
+++|+|||||.+|+..|.+|.+. . ..|.|+|.....|+.+.
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gia 44 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIA 44 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCcc
Confidence 47999999999999999999996 1 13999999999887553
No 249
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.11 E-value=3.3e-06 Score=87.52 Aligned_cols=43 Identities=28% Similarity=0.475 Sum_probs=39.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
..++||+|||+|.+||+||..++++|.+|+|||+...+||.+.
T Consensus 5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~ 47 (557)
T PRK07843 5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA 47 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence 3578999999999999999999999999999999998888654
No 250
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.10 E-value=3.4e-06 Score=85.68 Aligned_cols=43 Identities=23% Similarity=0.442 Sum_probs=38.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhC-CCcEEEEecc--------CCCCceeee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESR--------DRVGGRVHT 69 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~-G~~V~vlE~~--------~~~GG~~~s 69 (520)
.+|||+|||||.+|.+||..+++. |.+|+|+|+. +.+||.|-.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln 53 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVN 53 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecC
Confidence 469999999999999999999997 9999999984 579998854
No 251
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.10 E-value=3.2e-06 Score=93.33 Aligned_cols=43 Identities=37% Similarity=0.563 Sum_probs=40.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
..+||+|||||+|||+||..|+++|++|+|+|+.+.+||.+..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 3689999999999999999999999999999999999998864
No 252
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.10 E-value=4.4e-06 Score=85.05 Aligned_cols=43 Identities=40% Similarity=0.589 Sum_probs=40.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
..++|+|||||++||+||..|+++|++|+|+|+.+++||.++.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~ 184 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMY 184 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeec
Confidence 4579999999999999999999999999999999999998853
No 253
>PLN02546 glutathione reductase
Probab=98.09 E-value=3.3e-06 Score=86.80 Aligned_cols=43 Identities=28% Similarity=0.319 Sum_probs=37.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEec---------cCCCCceeee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLES---------RDRVGGRVHT 69 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~---------~~~~GG~~~s 69 (520)
.+|||+|||||.+|+.||..++++|++|+|+|+ ...+||.|-.
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n 129 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVL 129 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccC
Confidence 358999999999999999999999999999996 2567887754
No 254
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.09 E-value=3.3e-05 Score=77.93 Aligned_cols=43 Identities=16% Similarity=0.150 Sum_probs=34.8
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcC-Cc--EEEcCEEEEecChh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEG-GK--TFVADAVVVAVPLG 308 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~-g~--~~~ad~VI~a~p~~ 308 (520)
.|++++++++|.+|..+++.+.+...+ ++ ++.+|++|+|+...
T Consensus 71 ~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~ 116 (438)
T PRK13512 71 KQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGAS 116 (438)
T ss_pred CCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCC
Confidence 488999999999999999888776543 22 46899999999654
No 255
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.09 E-value=4.9e-05 Score=74.12 Aligned_cols=42 Identities=26% Similarity=0.419 Sum_probs=37.7
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
..++||+|||||.+|-.||.-.+-+|.+|.++|+.+..-|..
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTS 106 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTS 106 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCcc
Confidence 356999999999999999999999999999999988866654
No 256
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.08 E-value=5.8e-06 Score=83.95 Aligned_cols=37 Identities=30% Similarity=0.322 Sum_probs=35.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCc
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG 65 (520)
+||+|||+|++|+++|+.|+++|++|+|+|+....||
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 6999999999999999999999999999999988876
No 257
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.06 E-value=4.3e-06 Score=87.18 Aligned_cols=39 Identities=28% Similarity=0.358 Sum_probs=35.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCce
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~ 66 (520)
+.||+|||||+|||+||..++++|.+|+|+|+....||.
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~ 41 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH 41 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 469999999999999999999999999999999876664
No 258
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.06 E-value=0.00097 Score=64.93 Aligned_cols=53 Identities=23% Similarity=0.163 Sum_probs=42.6
Q ss_pred hHHHHHHHh-ccCCeecCceeEEEEEeCCeE-EEEEcCCcEEEcCEEEEecChhhh
Q 010001 257 YLPVINTLA-KGLDIRLGHRVTKITRHYIGV-KVTVEGGKTFVADAVVVAVPLGVL 310 (520)
Q Consensus 257 ~~~l~~~L~-~gv~i~~~~~V~~I~~~~~~v-~V~~~~g~~~~ad~VI~a~p~~~l 310 (520)
...+.+.+. .|++++.+++|.+|+.+++++ .|.+.+| ++.||.||+|+..+.-
T Consensus 140 ~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 140 LKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAG 194 (337)
T ss_pred HHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhh
Confidence 444444443 589999999999999988876 5788888 8999999999998763
No 259
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.06 E-value=7e-06 Score=85.55 Aligned_cols=43 Identities=33% Similarity=0.523 Sum_probs=40.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
....+|+|||||++||++|+.|++.|++|+|+|+.+.+||..+
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 4578999999999999999999999999999999999999775
No 260
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.03 E-value=8.8e-06 Score=79.63 Aligned_cols=45 Identities=31% Similarity=0.395 Sum_probs=40.9
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
+...++|+|||||++||++|..|++.|++|+|+|+.+.+||.+..
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~ 59 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLF 59 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeee
Confidence 345689999999999999999999999999999999999998753
No 261
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.03 E-value=5.1e-06 Score=81.39 Aligned_cols=36 Identities=42% Similarity=0.490 Sum_probs=33.4
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCc
Q 010001 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG 65 (520)
||+|||||++|+.||+.|+++|++|+|+|+.+..|-
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 799999999999999999999999999999876654
No 262
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.01 E-value=7.3e-06 Score=74.86 Aligned_cols=41 Identities=41% Similarity=0.731 Sum_probs=36.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC--CCCcee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD--RVGGRV 67 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~--~~GG~~ 67 (520)
...||||||||++||.||.+|+.+|++|+|+|+.. .+||.+
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 46899999999999999999999999999999975 456665
No 263
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.00 E-value=4.9e-06 Score=79.47 Aligned_cols=34 Identities=35% Similarity=0.549 Sum_probs=29.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCC-CcEEEEeccCC
Q 010001 29 PSVIVIGAGMAGVAAARALHDAS-FKVVLLESRDR 62 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G-~~V~vlE~~~~ 62 (520)
||+||||||.+|+.+|.+|+++| .+|+|+|+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 69999999999999999999997 69999999654
No 264
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.00 E-value=1.3e-05 Score=59.47 Aligned_cols=34 Identities=41% Similarity=0.682 Sum_probs=31.8
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCC
Q 010001 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~ 63 (520)
+|+|||||..|+-+|..|++.|.+|+|+|+++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 5899999999999999999999999999998764
No 265
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.99 E-value=9e-06 Score=84.89 Aligned_cols=42 Identities=31% Similarity=0.510 Sum_probs=38.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc-CCCCceeee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR-DRVGGRVHT 69 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~-~~~GG~~~s 69 (520)
+|||+|||||.+|.+||..+++.|.+|+|+|+. +.+||.|-.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn 158 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVN 158 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeE
Confidence 689999999999999999999999999999974 478998854
No 266
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.99 E-value=6.9e-06 Score=76.52 Aligned_cols=36 Identities=36% Similarity=0.526 Sum_probs=33.5
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
.....||||||||++|.+.|+.|+|.|.+|+|+||.
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 356789999999999999999999999999999994
No 267
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.98 E-value=7.4e-06 Score=74.79 Aligned_cols=34 Identities=26% Similarity=0.466 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
+++||+|||||++||+||..|+++|+++.|+-+.
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~g 34 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRG 34 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCC
Confidence 5799999999999999999999999999999763
No 268
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.97 E-value=8.7e-06 Score=72.82 Aligned_cols=32 Identities=38% Similarity=0.605 Sum_probs=30.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
||+|||||++||+||..|++.|.+|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999999999998754
No 269
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.97 E-value=8.5e-05 Score=74.00 Aligned_cols=41 Identities=24% Similarity=0.441 Sum_probs=35.5
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecCh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 307 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 307 (520)
.|++++++++|++|+. ++.+.|.+.+|+++.+|.||+++..
T Consensus 199 ~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 199 AGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGI 239 (396)
T ss_pred CCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCC
Confidence 6999999999999976 5557788889989999999999864
No 270
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.00012 Score=68.22 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=41.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeec
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTD 70 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~ 70 (520)
..+||+|+|.|+.-...+..|+-+|.+|+.||+++..|+-.+|.
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asl 48 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASL 48 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccce
Confidence 37999999999999999999999999999999999999998874
No 271
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.95 E-value=9.5e-06 Score=80.20 Aligned_cols=35 Identities=37% Similarity=0.513 Sum_probs=32.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+++||+|||||++|++||..|+++|.+|+|+|+..
T Consensus 1 ~~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 1 MKFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 46899999999999999999999999999999863
No 272
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.94 E-value=0.00013 Score=72.16 Aligned_cols=42 Identities=24% Similarity=0.492 Sum_probs=37.5
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecCh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 307 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 307 (520)
.|++++++++|.+|..+++.+.|.+.+|+++.+|.||+|+..
T Consensus 196 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 196 MGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGL 237 (377)
T ss_pred CCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCC
Confidence 589999999999999887777888889999999999999864
No 273
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.93 E-value=0.00013 Score=70.80 Aligned_cols=36 Identities=25% Similarity=0.580 Sum_probs=32.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCC--CcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G--~~V~vlE~~~~ 62 (520)
++++|+|||||.+||.+|..|.++- .+|+++|+++.
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~ 39 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY 39 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence 4679999999999999999999974 89999999875
No 274
>PRK13984 putative oxidoreductase; Provisional
Probab=97.92 E-value=1.5e-05 Score=83.96 Aligned_cols=43 Identities=30% Similarity=0.534 Sum_probs=40.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
...++|+|||||++||++|..|+++|++|+|||+.+.+||..+
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 4578999999999999999999999999999999999999775
No 275
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.91 E-value=0.00017 Score=73.64 Aligned_cols=42 Identities=31% Similarity=0.414 Sum_probs=36.2
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCC--cEEEcCEEEEecCh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGG--KTFVADAVVVAVPL 307 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g--~~~~ad~VI~a~p~ 307 (520)
.|++++++++|.+|+.+++++.+.+.+| +++.+|.||+|+..
T Consensus 224 ~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~ 267 (461)
T TIGR01350 224 KGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGR 267 (461)
T ss_pred cCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCC
Confidence 5899999999999998888887777777 47999999999864
No 276
>PRK07846 mycothione reductase; Reviewed
Probab=97.90 E-value=0.00012 Score=73.97 Aligned_cols=42 Identities=33% Similarity=0.517 Sum_probs=36.7
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecCh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 307 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 307 (520)
.+++++++++|.+|+.+++++.|.+.+|+++.+|.||+|+..
T Consensus 219 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~ 260 (451)
T PRK07846 219 KRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGR 260 (451)
T ss_pred cCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECC
Confidence 578999999999998877777788888889999999999864
No 277
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.90 E-value=1.2e-05 Score=81.82 Aligned_cols=42 Identities=38% Similarity=0.544 Sum_probs=36.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC--------CCCceeee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD--------RVGGRVHT 69 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~--------~~GG~~~s 69 (520)
+||++|||||++|+.||..+++.|.+|+|+|+.. .+||.|-.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n 51 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVN 51 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccc
Confidence 5899999999999999999999999999999742 47887643
No 278
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.90 E-value=1.2e-05 Score=81.57 Aligned_cols=40 Identities=30% Similarity=0.478 Sum_probs=36.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
++|+|||||++|++||..|++.|.+|+|+|+. ..||.|-.
T Consensus 1 ~~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~n 40 (458)
T PRK06912 1 SKLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCLN 40 (458)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCCC
Confidence 38999999999999999999999999999985 57888753
No 279
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.88 E-value=0.00015 Score=74.00 Aligned_cols=43 Identities=30% Similarity=0.358 Sum_probs=37.3
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 308 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 308 (520)
.|++++++++|++|+.+++++.+.+.+|+++.+|.||+|+...
T Consensus 229 ~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 271 (461)
T PRK05249 229 SGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRT 271 (461)
T ss_pred cCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCC
Confidence 5899999999999998777777777888889999999998643
No 280
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.87 E-value=0.00015 Score=72.29 Aligned_cols=41 Identities=44% Similarity=0.588 Sum_probs=36.1
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCc--EEEcCEEEEecC
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGK--TFVADAVVVAVP 306 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~--~~~ad~VI~a~p 306 (520)
.|++++++++|++++..++++.+.+++|+ ++.+|.|++|+.
T Consensus 227 ~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiG 269 (454)
T COG1249 227 GGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIG 269 (454)
T ss_pred CCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccC
Confidence 47899999999999998887888888876 688999999984
No 281
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.86 E-value=2.3e-05 Score=73.10 Aligned_cols=43 Identities=28% Similarity=0.346 Sum_probs=39.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCCCCceeee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~--G~~V~vlE~~~~~GG~~~s 69 (520)
..+.|+|||+|+||+.+|+.|.|+ +.+|.|+|+.+.++|..+.
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy 63 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY 63 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee
Confidence 345999999999999999999996 6899999999999999886
No 282
>PRK02106 choline dehydrogenase; Validated
Probab=97.86 E-value=1.5e-05 Score=82.97 Aligned_cols=36 Identities=36% Similarity=0.512 Sum_probs=33.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHh-CCCcEEEEeccC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHD-ASFKVVLLESRD 61 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~-~G~~V~vlE~~~ 61 (520)
...+|+||||||.+|+.+|.+|++ .|++|+|||+.+
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 466999999999999999999999 799999999964
No 283
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=0.00013 Score=71.79 Aligned_cols=44 Identities=36% Similarity=0.398 Sum_probs=36.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeec
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTD 70 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~ 70 (520)
..+||+|||||.||+-||...++-|.+++++=-+-..=|.+..+
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCN 46 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCN 46 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccc
Confidence 45999999999999999999999999999997764444455443
No 284
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.85 E-value=0.00021 Score=72.90 Aligned_cols=43 Identities=40% Similarity=0.574 Sum_probs=36.4
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCC---cEEEcCEEEEecChh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVPLG 308 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g---~~~~ad~VI~a~p~~ 308 (520)
.|++++++++|++|+.+++++.+.+.+| +++.+|.||+|+...
T Consensus 226 ~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~ 271 (462)
T PRK06416 226 RGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRR 271 (462)
T ss_pred cCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCc
Confidence 5899999999999998877777776666 678999999998643
No 285
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.83 E-value=1.9e-05 Score=84.95 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=32.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCC
Q 010001 29 PSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDR 62 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~--G~~V~vlE~~~~ 62 (520)
++|+|||||++||+||..|+++ |++|+|+|+++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 5899999999999999999998 899999999875
No 286
>PLN02507 glutathione reductase
Probab=97.82 E-value=0.00023 Score=72.94 Aligned_cols=42 Identities=31% Similarity=0.532 Sum_probs=37.0
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecCh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 307 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 307 (520)
.|+++++++.|++|+.+++++.|.+.+|+++.+|.||++++.
T Consensus 257 ~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~ 298 (499)
T PLN02507 257 RGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGR 298 (499)
T ss_pred CCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecC
Confidence 589999999999999877778788888888999999999863
No 287
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.80 E-value=2.4e-05 Score=80.10 Aligned_cols=43 Identities=35% Similarity=0.421 Sum_probs=39.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
..++||+|||||.|||.||..++++|.+|+|+|+....+|.+.
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~ 46 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTV 46 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchh
Confidence 4679999999999999999999999999999999988876554
No 288
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.79 E-value=0.00016 Score=73.20 Aligned_cols=42 Identities=40% Similarity=0.556 Sum_probs=36.6
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecCh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 307 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 307 (520)
.+++++++++|.+++.+++++.|++.+|+++.+|.||+|++.
T Consensus 222 ~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~ 263 (452)
T TIGR03452 222 KKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGR 263 (452)
T ss_pred cCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeecc
Confidence 578999999999999877777787778888999999999864
No 289
>PRK06116 glutathione reductase; Validated
Probab=97.79 E-value=0.00025 Score=71.99 Aligned_cols=42 Identities=21% Similarity=0.404 Sum_probs=36.3
Q ss_pred ccCCeecCceeEEEEEeCCe-EEEEEcCCcEEEcCEEEEecCh
Q 010001 266 KGLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPL 307 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~-v~V~~~~g~~~~ad~VI~a~p~ 307 (520)
.|++++++++|.+|+.++++ +.|.+.+|+++.+|.||+|+..
T Consensus 221 ~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~ 263 (450)
T PRK06116 221 KGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGR 263 (450)
T ss_pred CCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCC
Confidence 68999999999999987655 7788888989999999999853
No 290
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.77 E-value=0.00029 Score=71.36 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=32.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
+.+|+|||||.+|+-.|..|++.|.+|+|+|+.++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 200 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHER 200 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 46999999999999999999999999999998654
No 291
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.77 E-value=0.0006 Score=66.52 Aligned_cols=32 Identities=38% Similarity=0.673 Sum_probs=29.9
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
||+|||+|++||++|..|.+. ++|+|+=|.+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence 999999999999999999998 99999988665
No 292
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.76 E-value=0.00039 Score=70.75 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=36.9
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecCh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 307 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 307 (520)
.|++++++++|.+|+.+++++.|.+.+|+++.+|.||+|+..
T Consensus 231 ~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~ 272 (466)
T PRK07845 231 RGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGS 272 (466)
T ss_pred CCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecC
Confidence 599999999999998877778787788889999999999753
No 293
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.75 E-value=0.00038 Score=70.39 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=32.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
+.+|+|||||.+|+.+|..|++.|.+|+|+|+.++
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 191 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAST 191 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 46899999999999999999999999999999654
No 294
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.75 E-value=0.00032 Score=71.07 Aligned_cols=42 Identities=36% Similarity=0.482 Sum_probs=36.7
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecCh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 307 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 307 (520)
.|++++++++|.+|+..++++.|.+.+|+++.+|.||+|++.
T Consensus 220 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~ 261 (446)
T TIGR01424 220 RGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGR 261 (446)
T ss_pred CCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCC
Confidence 589999999999998877777777778888999999999864
No 295
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.70 E-value=3.7e-05 Score=79.87 Aligned_cols=33 Identities=30% Similarity=0.570 Sum_probs=30.9
Q ss_pred eEEEEcCCHHHHHHHHHHH----hCCCcEEEEeccCC
Q 010001 30 SVIVIGAGMAGVAAARALH----DASFKVVLLESRDR 62 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~----~~G~~V~vlE~~~~ 62 (520)
||+|||||+|||+||..++ ++|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 8999999999999999998 67999999999775
No 296
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.67 E-value=0.00023 Score=76.99 Aligned_cols=41 Identities=22% Similarity=0.377 Sum_probs=34.4
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 308 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 308 (520)
.|++++++++|.+|..+.. .|.+.+|+++.||++|+|+...
T Consensus 72 ~gI~~~~g~~V~~Id~~~~--~V~~~~G~~i~yD~LVIATGs~ 112 (847)
T PRK14989 72 HGIKVLVGERAITINRQEK--VIHSSAGRTVFYDKLIMATGSY 112 (847)
T ss_pred CCCEEEcCCEEEEEeCCCc--EEEECCCcEEECCEEEECCCCC
Confidence 5899999999999987654 4567788889999999999754
No 297
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.65 E-value=0.00069 Score=69.07 Aligned_cols=35 Identities=37% Similarity=0.545 Sum_probs=32.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 200 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDR 200 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence 47999999999999999999999999999998654
No 298
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.63 E-value=0.00061 Score=69.47 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=31.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+.+|+|||||.+|+-+|..|++.|.+|+|+|+.+
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~ 205 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLD 205 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 4699999999999999999999999999999754
No 299
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.62 E-value=0.00062 Score=69.57 Aligned_cols=35 Identities=31% Similarity=0.588 Sum_probs=32.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~ 214 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR 214 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 46999999999999999999999999999999654
No 300
>PRK06370 mercuric reductase; Validated
Probab=97.62 E-value=0.00082 Score=68.51 Aligned_cols=35 Identities=23% Similarity=0.448 Sum_probs=32.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~ 205 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPR 205 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 47999999999999999999999999999998654
No 301
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.61 E-value=0.015 Score=60.24 Aligned_cols=45 Identities=29% Similarity=0.240 Sum_probs=35.4
Q ss_pred hccCCeecCceeEEEEEeCCeE-EEEEc---CC--cEEEcCEEEEecChhh
Q 010001 265 AKGLDIRLGHRVTKITRHYIGV-KVTVE---GG--KTFVADAVVVAVPLGV 309 (520)
Q Consensus 265 ~~gv~i~~~~~V~~I~~~~~~v-~V~~~---~g--~~~~ad~VI~a~p~~~ 309 (520)
..|++|+.+++|.+|+++++++ .|++. +| .++.|+.||.|+.++.
T Consensus 140 ~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa 190 (516)
T TIGR03377 140 EHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA 190 (516)
T ss_pred HcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence 3599999999999999988874 34432 34 2689999999998764
No 302
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.61 E-value=0.00078 Score=68.80 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=32.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
+.+|+|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 217 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPA 217 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 46999999999999999999999999999998543
No 303
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.60 E-value=2.7e-05 Score=69.81 Aligned_cols=44 Identities=25% Similarity=0.584 Sum_probs=38.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCC------CcEEEEeccCCCCceee
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDAS------FKVVLLESRDRVGGRVH 68 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G------~~V~vlE~~~~~GG~~~ 68 (520)
+....+|+|||||+.|..+||+|++.+ +.|+|||+....||...
T Consensus 7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSG 56 (380)
T KOG2852|consen 7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASG 56 (380)
T ss_pred cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccccc
Confidence 345589999999999999999999987 78999999888887543
No 304
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.60 E-value=0.0005 Score=74.35 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=35.6
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecC
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP 306 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p 306 (520)
.|+++++++.|.+|..++....|.+.+|+++.+|.||+|++
T Consensus 195 ~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G 235 (785)
T TIGR02374 195 KGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAG 235 (785)
T ss_pred cCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCC
Confidence 59999999999999866555578888999999999999995
No 305
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.57 E-value=0.00085 Score=68.33 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
...+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~ 208 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR 208 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 357999999999999999999999999999998554
No 306
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.56 E-value=0.00031 Score=75.94 Aligned_cols=41 Identities=22% Similarity=0.367 Sum_probs=34.9
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 308 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 308 (520)
.|++++++++|.+|..++. .|.+.+|+++.+|++|+|+...
T Consensus 67 ~gv~~~~g~~V~~Id~~~k--~V~~~~g~~~~yD~LVlATGs~ 107 (785)
T TIGR02374 67 HGITLYTGETVIQIDTDQK--QVITDAGRTLSYDKLILATGSY 107 (785)
T ss_pred CCCEEEcCCeEEEEECCCC--EEEECCCcEeeCCEEEECCCCC
Confidence 5899999999999988765 4566788899999999999754
No 307
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.54 E-value=0.001 Score=67.69 Aligned_cols=35 Identities=23% Similarity=0.421 Sum_probs=32.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
+.+++|||||.+|+-+|..|.+.|.+|+|+|+.++
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 204 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ 204 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 46899999999999999999999999999998654
No 308
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.54 E-value=0.00064 Score=65.68 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=27.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCC-CcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G-~~V~vlE~~~~ 62 (520)
.+|+++||.|+++|+.|..|.+.+ .+++.||+.+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 479999999999999999999986 89999999764
No 309
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.53 E-value=0.00011 Score=74.48 Aligned_cols=39 Identities=21% Similarity=0.352 Sum_probs=33.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
+||++|||||.+|..||.. ++|.+|+|+|+ +.+||.|-.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n 40 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLN 40 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeec
Confidence 5899999999999998754 46999999998 678998854
No 310
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.52 E-value=0.00011 Score=68.82 Aligned_cols=44 Identities=30% Similarity=0.410 Sum_probs=41.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeec
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTD 70 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~ 70 (520)
.++||+|||+|+.|-.||...++.|.+-.++|++..+||.|-..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnv 81 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNV 81 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeec
Confidence 57999999999999999999999999999999999999998653
No 311
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.52 E-value=0.0001 Score=72.14 Aligned_cols=51 Identities=18% Similarity=0.056 Sum_probs=40.5
Q ss_pred HHHHHHHh-ccCCeecCceeEEEEEeCCeEE-EEEcCC--cEEEcCEEEEecChh
Q 010001 258 LPVINTLA-KGLDIRLGHRVTKITRHYIGVK-VTVEGG--KTFVADAVVVAVPLG 308 (520)
Q Consensus 258 ~~l~~~L~-~gv~i~~~~~V~~I~~~~~~v~-V~~~~g--~~~~ad~VI~a~p~~ 308 (520)
+.+.+++. .|++++.+++|.++..+++++. |.+.++ .+++||+||+|+..+
T Consensus 267 ~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 267 EALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence 44555554 4889999999999999988864 665665 489999999998876
No 312
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.51 E-value=0.0011 Score=67.12 Aligned_cols=41 Identities=32% Similarity=0.451 Sum_probs=34.9
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecCh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 307 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 307 (520)
.|++++++++|.+|+.+++.+.+.+.++ ++.+|.||+|+..
T Consensus 212 ~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~ 252 (441)
T PRK08010 212 QGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGR 252 (441)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecC
Confidence 5999999999999998777777777666 6899999999753
No 313
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.51 E-value=8.8e-05 Score=76.42 Aligned_cols=36 Identities=31% Similarity=0.481 Sum_probs=33.8
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
+.+++|++|||+|.+|.+.|..|+..|.+|+|||+.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG 39 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG 39 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence 467899999999999999999999889999999994
No 314
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.47 E-value=0.0013 Score=67.43 Aligned_cols=32 Identities=22% Similarity=0.427 Sum_probs=30.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEec
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLES 59 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~ 59 (520)
+.+++|||||..|+-.|..|++.|.+|+|+++
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 213 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVR 213 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEc
Confidence 35899999999999999999999999999986
No 315
>PRK14727 putative mercuric reductase; Provisional
Probab=97.46 E-value=0.0015 Score=66.71 Aligned_cols=42 Identities=12% Similarity=0.252 Sum_probs=35.9
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 308 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 308 (520)
.|++++++++|++|+.+++.+.|.+.++ ++.+|.||+|++..
T Consensus 241 ~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~ 282 (479)
T PRK14727 241 EGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRH 282 (479)
T ss_pred CCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCC
Confidence 5899999999999998777777777766 68999999998654
No 316
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.45 E-value=0.0013 Score=66.94 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=32.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
..+++|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 208 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 46999999999999999999999999999999654
No 317
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.44 E-value=0.0013 Score=71.41 Aligned_cols=41 Identities=12% Similarity=0.242 Sum_probs=34.8
Q ss_pred ccCCeecCceeEEEEEeCC--eEEEEEcCCcEEEcCEEEEecC
Q 010001 266 KGLDIRLGHRVTKITRHYI--GVKVTVEGGKTFVADAVVVAVP 306 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~--~v~V~~~~g~~~~ad~VI~a~p 306 (520)
.|+++++++.|++|..+++ ...|.+.+|+++.+|.||+|++
T Consensus 200 ~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G 242 (847)
T PRK14989 200 MGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTG 242 (847)
T ss_pred CCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCC
Confidence 5999999999999986532 3567888999999999999995
No 318
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.43 E-value=0.0016 Score=66.32 Aligned_cols=41 Identities=34% Similarity=0.468 Sum_probs=34.6
Q ss_pred ccCCeecCceeEEEEEeCCe-EEEEEcCCcEEEcCEEEEecC
Q 010001 266 KGLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVP 306 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~-v~V~~~~g~~~~ad~VI~a~p 306 (520)
+|+++++++.|++|+.++++ ..|.+.+|+++.+|.||+|+.
T Consensus 244 ~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G 285 (486)
T TIGR01423 244 NGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIG 285 (486)
T ss_pred cCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeC
Confidence 68999999999999876554 567777788899999999985
No 319
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.43 E-value=0.002 Score=65.32 Aligned_cols=34 Identities=26% Similarity=0.492 Sum_probs=31.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+|+|||||.+|+-+|..|.+.|.+|+++++.+
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~ 182 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED 182 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 4689999999999999999999999999998754
No 320
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.42 E-value=0.002 Score=65.00 Aligned_cols=35 Identities=31% Similarity=0.592 Sum_probs=31.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
..+|+|||||.+|+-+|..|++.|.+|+++++.+.
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 171 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER 171 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 46999999999999999999999999999998543
No 321
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.42 E-value=0.00012 Score=76.01 Aligned_cols=32 Identities=34% Similarity=0.496 Sum_probs=30.3
Q ss_pred eEEEEcCCHHHHHHHHHHHhCC-CcEEEEeccC
Q 010001 30 SVIVIGAGMAGVAAARALHDAS-FKVVLLESRD 61 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~~~G-~~V~vlE~~~ 61 (520)
|+||||||.+|+.+|.+|+++| ++|+|||+..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 8999999999999999999998 7999999964
No 322
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.38 E-value=0.0018 Score=66.16 Aligned_cols=42 Identities=21% Similarity=0.186 Sum_probs=34.2
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCC---cEEEcCEEEEecCh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVPL 307 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g---~~~~ad~VI~a~p~ 307 (520)
+|+++++++.|.+|+..++.+.|+..+| +++.+|.||+|+..
T Consensus 233 ~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~ 277 (484)
T TIGR01438 233 HGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGR 277 (484)
T ss_pred cCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecC
Confidence 5999999999999988776666665555 37899999999863
No 323
>PRK13748 putative mercuric reductase; Provisional
Probab=97.37 E-value=0.0018 Score=67.76 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=35.2
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecCh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 307 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 307 (520)
.|++++++++|++|+.+++.+.+.+.++ ++.+|.||+|+..
T Consensus 323 ~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~ 363 (561)
T PRK13748 323 EGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGR 363 (561)
T ss_pred CCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCC
Confidence 5899999999999998777777777666 7999999999864
No 324
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.37 E-value=0.0018 Score=65.41 Aligned_cols=35 Identities=20% Similarity=0.410 Sum_probs=32.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
..+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 182 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDK 182 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 36899999999999999999999999999998654
No 325
>PRK14694 putative mercuric reductase; Provisional
Probab=97.36 E-value=0.0028 Score=64.71 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=34.6
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecCh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 307 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 307 (520)
.|++++++++|.+|+.+++.+.+.+.++ ++.+|.||+|+..
T Consensus 231 ~GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~ 271 (468)
T PRK14694 231 EGIEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGR 271 (468)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCC
Confidence 5899999999999988777677776655 7999999999854
No 326
>PLN02785 Protein HOTHEAD
Probab=97.29 E-value=0.00031 Score=72.96 Aligned_cols=35 Identities=37% Similarity=0.566 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
...||+||||||.+|+.+|..|++ +.+|+|||+..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 457999999999999999999999 68999999964
No 327
>PTZ00058 glutathione reductase; Provisional
Probab=97.26 E-value=0.0031 Score=65.16 Aligned_cols=35 Identities=11% Similarity=0.249 Sum_probs=32.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
..+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~ 271 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNR 271 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence 57999999999999999999999999999998543
No 328
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.25 E-value=0.00035 Score=69.60 Aligned_cols=41 Identities=12% Similarity=0.285 Sum_probs=34.2
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 308 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 308 (520)
.++++++++.|.+|..++.. |.+.+|+++.+|++|+|+...
T Consensus 71 ~~i~~~~g~~V~~id~~~~~--v~~~~g~~~~yd~LViATGs~ 111 (396)
T PRK09754 71 NNVHLHSGVTIKTLGRDTRE--LVLTNGESWHWDQLFIATGAA 111 (396)
T ss_pred CCCEEEcCCEEEEEECCCCE--EEECCCCEEEcCEEEEccCCC
Confidence 58999999999999887654 455678899999999999754
No 329
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.0013 Score=63.47 Aligned_cols=43 Identities=30% Similarity=0.373 Sum_probs=35.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
.+.+||+|||||.||.-||..-++.|.+.+++-.+-.-=|.+.
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~ms 68 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMS 68 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccc
Confidence 5789999999999999999999999998888876633334443
No 330
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.24 E-value=0.00039 Score=69.90 Aligned_cols=37 Identities=27% Similarity=0.629 Sum_probs=33.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
.++++|+|||||.+|+++|..|.+.+++|+|+|+++.
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence 4568999999999999999999877899999998764
No 331
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0041 Score=53.98 Aligned_cols=45 Identities=31% Similarity=0.437 Sum_probs=35.8
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc---C-CCCceeee
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR---D-RVGGRVHT 69 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~---~-~~GG~~~s 69 (520)
+...-+|+|||+|+++-+||.+++++..+-++||-- + -+||.+.+
T Consensus 5 ~~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtT 53 (322)
T KOG0404|consen 5 MTHNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTT 53 (322)
T ss_pred ceeeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeee
Confidence 344568999999999999999999999999999952 2 23555544
No 332
>PLN02546 glutathione reductase
Probab=97.14 E-value=0.0049 Score=63.74 Aligned_cols=35 Identities=11% Similarity=0.275 Sum_probs=32.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
..+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~ 286 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK 286 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccc
Confidence 46999999999999999999999999999998544
No 333
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.08 E-value=0.00059 Score=68.53 Aligned_cols=40 Identities=43% Similarity=0.683 Sum_probs=37.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
..+++|||||..||.+|..|+++|++|+++|+.+++||..
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~ 175 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL 175 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhh
Confidence 5799999999999999999999999999999999987754
No 334
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.00051 Score=63.07 Aligned_cols=35 Identities=37% Similarity=0.515 Sum_probs=32.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
...|.|||||++|.-|||.|+++|++|.++|..+.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 45799999999999999999999999999998754
No 335
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.00 E-value=0.00093 Score=61.87 Aligned_cols=45 Identities=33% Similarity=0.389 Sum_probs=41.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeec
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTD 70 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~ 70 (520)
...+|..|||||-.|+++|++.++.|.+|.|+|..-.+||.|-..
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~ 62 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNV 62 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEee
Confidence 458999999999999999999999999999999988999998653
No 336
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.97 E-value=0.021 Score=55.60 Aligned_cols=56 Identities=23% Similarity=0.275 Sum_probs=40.4
Q ss_pred Ccccc-ccChHHHHHHHh-----ccCCeecCceeEEEEEeCCeEEEEEcCC-cEEEcCEEEEecC
Q 010001 249 GHGLM-VRGYLPVINTLA-----KGLDIRLGHRVTKITRHYIGVKVTVEGG-KTFVADAVVVAVP 306 (520)
Q Consensus 249 g~~~~-~~G~~~l~~~L~-----~gv~i~~~~~V~~I~~~~~~v~V~~~~g-~~~~ad~VI~a~p 306 (520)
|..+| .+-..+++++|. .||+|+++++|++| +++++.|.+.++ ..++||+||+||.
T Consensus 76 grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtG 138 (376)
T TIGR03862 76 GRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALG 138 (376)
T ss_pred CEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCC
Confidence 44444 334566666664 49999999999999 444577776543 4699999999995
No 337
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.96 E-value=0.0069 Score=60.95 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=31.6
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecCh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 307 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 307 (520)
.|++++++++|.+|.. + .|.+++|+++.+|.||.+++.
T Consensus 241 ~gV~v~~~~~v~~v~~--~--~v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 241 LGVDIRTKTAVKEVLD--K--EVVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred CCCEEEeCCeEEEEeC--C--EEEECCCCEEEccEEEEccCC
Confidence 6999999999999864 3 255778989999999999763
No 338
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.88 E-value=0.0013 Score=65.19 Aligned_cols=40 Identities=23% Similarity=0.150 Sum_probs=32.2
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 308 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 308 (520)
.|++++++++|.+|..++..+ ++ +|+++.+|++|+|+...
T Consensus 71 ~gv~~~~~~~V~~id~~~~~v--~~-~~~~~~yd~LVlATG~~ 110 (377)
T PRK04965 71 FNLRLFPHTWVTDIDAEAQVV--KS-QGNQWQYDKLVLATGAS 110 (377)
T ss_pred CCCEEECCCEEEEEECCCCEE--EE-CCeEEeCCEEEECCCCC
Confidence 488999999999998876543 33 46689999999999754
No 339
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0012 Score=60.79 Aligned_cols=35 Identities=34% Similarity=0.442 Sum_probs=32.7
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
.-+||.+|||||-+||+||.+.+..|.+|.++|-=
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV 51 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFV 51 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeec
Confidence 46899999999999999999999999999999963
No 340
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.00087 Score=62.00 Aligned_cols=40 Identities=33% Similarity=0.491 Sum_probs=32.5
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCce
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~ 66 (520)
.+..|||+|||||++|-+||.+-+++|.+.-|+ .+++||.
T Consensus 208 ~k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerfGGQ 247 (520)
T COG3634 208 AKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQ 247 (520)
T ss_pred ccCCceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhhCCe
Confidence 356899999999999999999999999876555 3355553
No 341
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.71 E-value=0.02 Score=55.36 Aligned_cols=41 Identities=27% Similarity=0.307 Sum_probs=29.8
Q ss_pred cCCeecCceeEEEEEeCC-eEEEEEcCC-----cEEEcCEEEEecCh
Q 010001 267 GLDIRLGHRVTKITRHYI-GVKVTVEGG-----KTFVADAVVVAVPL 307 (520)
Q Consensus 267 gv~i~~~~~V~~I~~~~~-~v~V~~~~g-----~~~~ad~VI~a~p~ 307 (520)
.++++.+++|++++..++ ++.+++.+. .++.+|.||+||..
T Consensus 293 ~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 293 RLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp -SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---E
T ss_pred CeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCCc
Confidence 568999999999999984 787776642 37799999999864
No 342
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.65 E-value=0.0023 Score=54.43 Aligned_cols=32 Identities=38% Similarity=0.472 Sum_probs=30.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+|+|||||-.|.+.|..|+++|++|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 68999999999999999999999999998864
No 343
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.52 E-value=0.0028 Score=55.34 Aligned_cols=33 Identities=27% Similarity=0.461 Sum_probs=27.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
|+|+|||.|..||..|..|+++|++|+.+|.++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 589999999999999999999999999999865
No 344
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.50 E-value=0.0025 Score=62.76 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=29.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhC---CCcEEEEeccCC
Q 010001 30 SVIVIGAGMAGVAAARALHDA---SFKVVLLESRDR 62 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~~~---G~~V~vlE~~~~ 62 (520)
+|+|||||++|+++|..|.++ +++|+|+|+++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence 589999999999999999754 689999998765
No 345
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.50 E-value=0.0038 Score=59.46 Aligned_cols=35 Identities=37% Similarity=0.560 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhC----CCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~----G~~V~vlE~~~ 61 (520)
..+||+|||||+.|++.|..|... -++|.++|..+
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 479999999999999999999975 46899999973
No 346
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.39 E-value=0.0048 Score=53.72 Aligned_cols=32 Identities=34% Similarity=0.504 Sum_probs=28.0
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+|+|||||..|...|..++..|++|+++|.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999999853
No 347
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.39 E-value=0.0036 Score=63.76 Aligned_cols=34 Identities=38% Similarity=0.556 Sum_probs=31.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCC
Q 010001 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~ 63 (520)
+|+|||.|.+|+++|..|.++|++|+++|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999987654
No 348
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.38 E-value=0.0044 Score=63.49 Aligned_cols=34 Identities=35% Similarity=0.550 Sum_probs=31.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+|+|||+|.+|+++|..|+++|++|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999765
No 349
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.36 E-value=0.0045 Score=62.77 Aligned_cols=38 Identities=34% Similarity=0.497 Sum_probs=33.9
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhC-CCcEEEEeccCC
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRDR 62 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~-G~~V~vlE~~~~ 62 (520)
....||.||||||-||...|..|++. ..+|+|+|+...
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~ 92 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGD 92 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCC
Confidence 45789999999999999999999997 679999999543
No 350
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=96.15 E-value=0.0045 Score=56.29 Aligned_cols=34 Identities=32% Similarity=0.621 Sum_probs=28.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCC-------CcEEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDAS-------FKVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G-------~~V~vlE~~ 60 (520)
+.++|+|||+|+.||++|..|.+.+ .+|+|++-.
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 4579999999999999999998854 478888653
No 351
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.06 E-value=0.0076 Score=57.67 Aligned_cols=33 Identities=36% Similarity=0.442 Sum_probs=31.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
++|+|||+|..|.+.|..|+++|++|+++|++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 479999999999999999999999999999865
No 352
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.00 E-value=0.01 Score=50.10 Aligned_cols=31 Identities=32% Similarity=0.497 Sum_probs=29.1
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 31 VIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 31 v~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
|+|||+|..|+..|+.|+++|++|+++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999998854
No 353
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.93 E-value=0.0075 Score=55.27 Aligned_cols=55 Identities=31% Similarity=0.489 Sum_probs=44.1
Q ss_pred chhcccCCCCCCCCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc--------CCCCceeeec
Q 010001 13 RALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR--------DRVGGRVHTD 70 (520)
Q Consensus 13 ~~~~~~~~~~~~~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~--------~~~GG~~~s~ 70 (520)
.+.++...+.. .+-+|+|||||..|.-||....--|.+|+|+|.+ +..|||..+.
T Consensus 156 ~GvllgGvpGV---~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~ 218 (371)
T COG0686 156 KGVLLGGVPGV---LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTL 218 (371)
T ss_pred ceeEecCCCCC---CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEE
Confidence 45555555443 6789999999999999999999999999999998 3557876654
No 354
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.90 E-value=0.12 Score=49.59 Aligned_cols=38 Identities=29% Similarity=0.365 Sum_probs=33.8
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCC-CcEEEEeccCC
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRDR 62 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G-~~V~vlE~~~~ 62 (520)
|...+|+|.||-|++-|+.|..|...+ ++++.||+.+.
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~ 40 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPD 40 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCC
Confidence 456799999999999999999999985 78999999764
No 355
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.84 E-value=0.0087 Score=56.81 Aligned_cols=48 Identities=25% Similarity=0.272 Sum_probs=44.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF 73 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~ 73 (520)
+..+||+|||.|+.-.-.|...++.|.+|+=+|.++..||...|++..
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms 53 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS 53 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence 467999999999999999999999999999999999999999987643
No 356
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.83 E-value=0.014 Score=50.16 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=30.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
-++.+|+|+|+|.+|+.||..|...|++|+++|...
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 356899999999999999999999999999999853
No 357
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.79 E-value=0.012 Score=53.16 Aligned_cols=33 Identities=36% Similarity=0.656 Sum_probs=31.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
++++|||+|--|.+.|..|.+.|++|+++|+.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 579999999999999999999999999999965
No 358
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.78 E-value=0.011 Score=56.35 Aligned_cols=33 Identities=24% Similarity=0.480 Sum_probs=30.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
|+|.|||+|..||+.|..|++.||+|+.+|...
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 589999999999999999999999999999753
No 359
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.67 E-value=0.096 Score=51.33 Aligned_cols=44 Identities=32% Similarity=0.442 Sum_probs=38.1
Q ss_pred ccCCeecCceeEEEEEeCC-e-EEEEEcCCcEEEcCEEEEecChhh
Q 010001 266 KGLDIRLGHRVTKITRHYI-G-VKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~-~-v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
+|+++++++.+.+++.+.+ + ..|.+.+|+++.+|.||+.+....
T Consensus 268 kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p 313 (478)
T KOG1336|consen 268 KGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKP 313 (478)
T ss_pred cCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccc
Confidence 7999999999999988763 3 479999999999999999987654
No 360
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.66 E-value=0.015 Score=54.77 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=31.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
.+|+|||+|..|...|..|+++|++|+++|.++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 489999999999999999999999999999864
No 361
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.62 E-value=0.019 Score=55.15 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
++++|+|||+|..|.+.|..|+++|++|+++.++.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 34689999999999999999999999999998853
No 362
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.62 E-value=0.016 Score=56.52 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=30.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
.++|+|||+|..|.+.|..|+++|++|+++++.
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 468999999999999999999999999999974
No 363
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.60 E-value=0.017 Score=55.07 Aligned_cols=33 Identities=30% Similarity=0.282 Sum_probs=31.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
.++|+|||+|..|...|.+|+++|++|+++.+.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 468999999999999999999999999999985
No 364
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=95.56 E-value=0.019 Score=58.64 Aligned_cols=37 Identities=35% Similarity=0.563 Sum_probs=33.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~ 63 (520)
.+.+|+|||||.+|+-.|..|++.|.+|+|+|+.+++
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 204 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI 204 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence 3479999999999999999999999999999997653
No 365
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.56 E-value=0.017 Score=51.47 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=30.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
-...+|+|||+|.|+.-+|..|++.|.+|+++=|++
T Consensus 165 ~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 165 FKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp CTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred cCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 346899999999999999999999999999997754
No 366
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=95.55 E-value=0.12 Score=50.85 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=31.5
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecCh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 307 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 307 (520)
.|++++++++|.+|+. + .|.+.+|+++.+|.||+|++.
T Consensus 204 ~gV~v~~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~ 241 (364)
T TIGR03169 204 RGIEVHEGAPVTRGPD--G--ALILADGRTLPADAILWATGA 241 (364)
T ss_pred CCCEEEeCCeeEEEcC--C--eEEeCCCCEEecCEEEEccCC
Confidence 5899999999998853 2 466678889999999999874
No 367
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.49 E-value=0.019 Score=58.41 Aligned_cols=34 Identities=35% Similarity=0.647 Sum_probs=31.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
.++|+|||+|.+|+++|..|+++|++|+++|++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 5789999999999999999999999999999864
No 368
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.46 E-value=0.018 Score=54.50 Aligned_cols=33 Identities=30% Similarity=0.379 Sum_probs=30.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
.+|+|||+|..|.+.|..|+++|++|+++|.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999753
No 369
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.43 E-value=0.023 Score=54.13 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=31.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
-.+|+|||+|..|..-|..++.+|++|+++|..+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3579999999999999999999999999999864
No 370
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.40 E-value=0.025 Score=53.75 Aligned_cols=34 Identities=32% Similarity=0.341 Sum_probs=31.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+|+|||+|..|.+.|..|+++|++|+++|.+.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4679999999999999999999999999999853
No 371
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.33 E-value=0.02 Score=54.20 Aligned_cols=33 Identities=24% Similarity=0.517 Sum_probs=30.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
.+|+|||+|..|...|..|+++|++|+++|.++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 369999999999999999999999999999864
No 372
>PRK04148 hypothetical protein; Provisional
Probab=95.32 E-value=0.021 Score=46.23 Aligned_cols=35 Identities=17% Similarity=0.523 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
...++++||.| .|.+.|..|++.|++|+.+|-++.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 34689999999 999999999999999999998764
No 373
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.26 E-value=0.028 Score=54.39 Aligned_cols=35 Identities=31% Similarity=0.306 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..++|+|||+|.-|.+.|..|+++|++|++++++.
T Consensus 3 ~~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 3 HGMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 35689999999999999999999999999998853
No 374
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.18 E-value=0.026 Score=54.05 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=29.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
++|+|||+|..|.+.|..|+++|++|++++++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 36999999999999999999999999999984
No 375
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=95.14 E-value=0.019 Score=52.84 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=32.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhC-CC-cEEEEeccC
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDA-SF-KVVLLESRD 61 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~-G~-~V~vlE~~~ 61 (520)
....++|+|||||.+|++.|..+.++ |. +|.|+|-.+
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 35689999999999999999999987 55 899999765
No 376
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=95.11 E-value=0.013 Score=52.31 Aligned_cols=33 Identities=33% Similarity=0.579 Sum_probs=27.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCC
Q 010001 30 SVIVIGAGMAGVAAARALHDA--SFKVVLLESRDR 62 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~~~--G~~V~vlE~~~~ 62 (520)
+.+||||||||.+||-.|+.. ..+|+++-+++.
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 368999999999999999986 457888877543
No 377
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.11 E-value=0.028 Score=53.86 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=29.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEec
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLES 59 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~ 59 (520)
++|+|||+|..|.+.|..|+++|++|+++.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 4799999999999999999999999999987
No 378
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.11 E-value=0.038 Score=47.23 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=31.3
Q ss_pred CCCCeEEEEcCCH-HHHHHHHHHHhCCCcEEEEecc
Q 010001 26 ARSPSVIVIGAGM-AGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 26 ~~~~dv~IIGaGi-sGLsaA~~L~~~G~~V~vlE~~ 60 (520)
-..++|+|||+|- +|..+|.+|.++|.+|+|+.+.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 3568999999995 7999999999999999999875
No 379
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.05 E-value=0.027 Score=55.79 Aligned_cols=36 Identities=33% Similarity=0.469 Sum_probs=33.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~ 63 (520)
.++|+|+|-|.+|++||..|.+.|++|++.|.+...
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 689999999999999999999999999999977655
No 380
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.03 E-value=0.033 Score=53.00 Aligned_cols=35 Identities=34% Similarity=0.389 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+-.+|+|||+|..|...|..|+++|++|+++|.+.
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 34579999999999999999999999999999854
No 381
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.00 E-value=0.04 Score=48.98 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=31.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+|+|||||-+|+..|..|.+.|.+|+|+....
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4699999999999999999999999999997643
No 382
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.99 E-value=0.035 Score=53.26 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+-.+|+|||+|..|.+.|..|+++|++|+++|.+.
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 34689999999999999999999999999999753
No 383
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.98 E-value=0.033 Score=57.51 Aligned_cols=35 Identities=37% Similarity=0.481 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
...+|+|||||.+|+-+|..|++.|.+|+|+|+.+
T Consensus 351 ~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~ 385 (515)
T TIGR03140 351 KGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD 385 (515)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence 35699999999999999999999999999998754
No 384
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.95 E-value=0.035 Score=52.97 Aligned_cols=33 Identities=30% Similarity=0.444 Sum_probs=30.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCC--CcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDAS--FKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G--~~V~vlE~~~ 61 (520)
++|+|||+|..|.++|+.|+.+| .+|.++|.+.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 47999999999999999999999 4899999864
No 385
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.88 E-value=0.034 Score=55.53 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=31.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
++|+|||.|..|+..|..|+++|++|+++|.+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 689999999999999999999999999999864
No 386
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=94.82 E-value=0.045 Score=52.09 Aligned_cols=33 Identities=33% Similarity=0.564 Sum_probs=30.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~~ 61 (520)
++|+|||+|..|.++|+.|+.+|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 589999999999999999999887 899999843
No 387
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=94.80 E-value=0.04 Score=58.07 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=32.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~ 63 (520)
+.+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l 347 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL 347 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 458999999999999999999999999999997653
No 388
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.77 E-value=0.036 Score=52.59 Aligned_cols=33 Identities=18% Similarity=0.478 Sum_probs=30.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
.+|+|||+|..|.+.|..|+++|++|+++|.++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 479999999999999999999999999999854
No 389
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.75 E-value=0.05 Score=52.10 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+.++|.|||+|.-|.+.|..|+++|++|++++++.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 45789999999999999999999999999999854
No 390
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.70 E-value=0.038 Score=52.15 Aligned_cols=33 Identities=33% Similarity=0.489 Sum_probs=30.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
.+|+|||+|..|.+.|..|+++|++|+++|.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 479999999999999999999999999998754
No 391
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.61 E-value=0.047 Score=56.45 Aligned_cols=35 Identities=37% Similarity=0.425 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
...+|+|||||.+|+-+|..|++.|.+|+|+++.+
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~ 384 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP 384 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc
Confidence 34699999999999999999999999999998754
No 392
>PRK10262 thioredoxin reductase; Provisional
Probab=94.60 E-value=0.052 Score=52.37 Aligned_cols=34 Identities=35% Similarity=0.465 Sum_probs=31.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 4699999999999999999999999999999854
No 393
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.58 E-value=0.047 Score=55.89 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+-++|+|||+|..|.+.|..|+++|++|+|+|+++
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 34589999999999999999999999999999763
No 394
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.55 E-value=0.049 Score=56.81 Aligned_cols=37 Identities=27% Similarity=0.313 Sum_probs=33.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~ 63 (520)
...+|+|||||.+|+-.|..|++.|.+|+++++.+++
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~ 178 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence 3579999999999999999999999999999997753
No 395
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.55 E-value=0.043 Score=42.79 Aligned_cols=34 Identities=29% Similarity=0.485 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
+...|+|||||-.|..-+..|.+.|.+|+|+-..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 4679999999999999999999999999999875
No 396
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.55 E-value=0.039 Score=55.19 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=31.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
++|.|||.|..|+..|..|+++|++|+++|++..
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 3699999999999999999999999999998653
No 397
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.54 E-value=0.078 Score=43.68 Aligned_cols=34 Identities=35% Similarity=0.460 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCc-EEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFK-VVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~-V~vlE~~ 60 (520)
...+|+|||+|=+|-++++.|.+.|.+ |+|+-|+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 468999999999999999999999986 9999875
No 398
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=94.53 E-value=0.056 Score=54.81 Aligned_cols=35 Identities=34% Similarity=0.384 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
...+|+|||||..|+-+|..|.+.|.+|+|+++.+
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 34799999999999999999999999999998853
No 399
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.51 E-value=0.047 Score=55.57 Aligned_cols=34 Identities=29% Similarity=0.169 Sum_probs=31.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+|+|+|.|.+|.++|..|.+.|.+|++.|.++
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 4589999999999999999999999999999754
No 400
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.44 E-value=0.26 Score=55.22 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=30.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~ 60 (520)
+..+|+|||+|..|+-.|..|++.|. .|+|+|..
T Consensus 316 ~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~ 350 (985)
T TIGR01372 316 PGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDAR 350 (985)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccC
Confidence 35799999999999999999999995 68899874
No 401
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.34 E-value=0.06 Score=52.05 Aligned_cols=33 Identities=30% Similarity=0.341 Sum_probs=30.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
++|+|||+|..|...|..|++.|++|++++++.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 579999999999999999999999999999853
No 402
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.29 E-value=0.065 Score=52.54 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=31.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
+..+|+|||+|..|+.+|..|.+.|.+|+++|++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 4577999999999999999999999999999885
No 403
>PRK12831 putative oxidoreductase; Provisional
Probab=94.29 E-value=0.067 Score=54.42 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
...+|+|||||.+|+-+|..|.+.|.+|+|+++.+
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 45799999999999999999999999999998743
No 404
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.26 E-value=0.078 Score=47.04 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
....|+|||||-.|...|..|.+.|.+|+|++..
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3579999999999999999999999999999764
No 405
>PLN02572 UDP-sulfoquinovose synthase
Probab=94.25 E-value=0.093 Score=52.99 Aligned_cols=58 Identities=28% Similarity=0.386 Sum_probs=44.1
Q ss_pred ccccchhcccchhc----ccCCCCCCCCCCCeEEEEcC-CHHHHHHHHHHHhCCCcEEEEecc
Q 010001 3 SASRSNRQLRRALC----YSNNAGKGQARSPSVIVIGA-GMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 3 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~dv~IIGa-GisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
+||+...+...+.+ ++.+..++.-+.++|+|.|| |..|...+..|+++|++|+++++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~ 80 (442)
T PLN02572 18 SASPASAQSTPAVTELATPSAPGSSSSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNL 80 (442)
T ss_pred cCCccccccccceecccCCCCCCCCccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEecc
Confidence 56666666666554 34444444445678999997 999999999999999999999853
No 406
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.24 E-value=0.059 Score=54.79 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=31.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+|.|+|.|.+|+++|..|.+.|++|++.|.++
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 3589999999999999999999999999999764
No 407
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.24 E-value=0.071 Score=45.61 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=29.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+++|.|||-|..|...|..|.++|++|.+++++.
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 3689999999999999999999999999999864
No 408
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.20 E-value=0.065 Score=51.82 Aligned_cols=32 Identities=31% Similarity=0.379 Sum_probs=29.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
++|+|||+|.-|.+.|..|+++|++|+++.++
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 36999999999999999999999999999884
No 409
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.17 E-value=0.086 Score=44.64 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=29.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEe
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLE 58 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE 58 (520)
....|+|||||-.|+.-|..|.+.|++|+|+.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 35789999999999999999999999999994
No 410
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=94.16 E-value=0.054 Score=47.30 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=34.4
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
+.....|+|||||..|...|-..+..|++|.+.+++..
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 55678999999999999999999999999999999653
No 411
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.12 E-value=0.064 Score=54.95 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
...+|+|+|.|.+|++++..|.++|.+|++.|.+
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3468999999999999999999999999999964
No 412
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.09 E-value=0.078 Score=53.79 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=32.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
...|+|+|+|-+|+++|..|+++|++|+++|..+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 35899999999999999999999999999998654
No 413
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=94.03 E-value=0.08 Score=50.42 Aligned_cols=35 Identities=31% Similarity=0.459 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
...+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 34699999999999999999999999999999843
No 414
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=94.00 E-value=0.068 Score=53.96 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=30.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCC--CcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G--~~V~vlE~~~ 61 (520)
+++|+|||+|..||..|..|+++| ++|+.+|.+.
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 368999999999999999999985 7899999754
No 415
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.91 E-value=0.09 Score=46.55 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~ 60 (520)
...+|+|||+|-.|..+|..|++.|+ +++|+|..
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 35789999999999999999999999 69999985
No 416
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.87 E-value=0.087 Score=53.43 Aligned_cols=36 Identities=36% Similarity=0.465 Sum_probs=32.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
.+..+|+|+|+|..||.|+..+...|.+|.++|.++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 457899999999999999999999999999998753
No 417
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=93.86 E-value=0.087 Score=51.58 Aligned_cols=33 Identities=33% Similarity=0.364 Sum_probs=30.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCc-EEEEecc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFK-VVLLESR 60 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~-V~vlE~~ 60 (520)
...|+|||+|.+|+-+|..|.+.|.+ |+|+++.
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 36899999999999999999999997 9999874
No 418
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=93.80 E-value=0.08 Score=52.20 Aligned_cols=32 Identities=19% Similarity=0.355 Sum_probs=28.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
++|+|||.|..|+..|..|++ |++|+++|.+.
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~ 32 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILP 32 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence 369999999999999988885 99999999864
No 419
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=93.76 E-value=0.077 Score=54.07 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCHHHHH-HHHHHHhCCCcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVA-AARALHDASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLs-aA~~L~~~G~~V~vlE~~~~ 62 (520)
+.++|.|||.|-+|++ +|..|.++|++|++.|.+..
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 4568999999999999 69999999999999998653
No 420
>PRK09897 hypothetical protein; Provisional
Probab=93.73 E-value=3.7 Score=42.39 Aligned_cols=53 Identities=13% Similarity=0.018 Sum_probs=36.5
Q ss_pred HHHHHHHhccCCeecCceeEEE--EEeCCeEEEEEcCCcEEEcCEEEEecChhhhh
Q 010001 258 LPVINTLAKGLDIRLGHRVTKI--TRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK 311 (520)
Q Consensus 258 ~~l~~~L~~gv~i~~~~~V~~I--~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~ 311 (520)
...+.+|.+...+..-.-++++ +.++++..+.++++ .+.+|.||.|+....+.
T Consensus 395 a~~l~~l~~aG~L~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~a~G~~~~~ 449 (534)
T PRK09897 395 IRRLLALREAGIIHILALGEDYEMEINESRTVIKTEDN-SYSFDVFIDARGQRPLK 449 (534)
T ss_pred HHHHHHHHHcCCEEEEecCccceeEecCCeEEEEeCCC-ceEeCEEEECCCCCCCc
Confidence 3344444444455555556644 77888888888765 89999999999877654
No 421
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.69 E-value=0.091 Score=51.01 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=31.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCC-CcEEEEecc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDAS-FKVVLLESR 60 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G-~~V~vlE~~ 60 (520)
+++|+|||+|-.|.++|+.|++.| .+|+|.+|+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 468999999999999999999999 899999997
No 422
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=93.67 E-value=0.078 Score=54.16 Aligned_cols=34 Identities=35% Similarity=0.496 Sum_probs=31.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
-.+|.|||+|..|...|..|+++|++|+++|++.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3579999999999999999999999999999864
No 423
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=93.66 E-value=0.089 Score=49.54 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=30.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
++|.|||.|..|.+.|..|.++|++|++++++.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 369999999999999999999999999998753
No 424
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.60 E-value=0.094 Score=53.28 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=31.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
...|+|+|+|-+|+++|..|+++|++|++.|.+.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3579999999999999999999999999999754
No 425
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.58 E-value=0.094 Score=53.10 Aligned_cols=32 Identities=19% Similarity=0.477 Sum_probs=29.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
..+|+|+|.|.+|.++|..|.+ |.+|+|.|..
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 4689999999999999999995 9999999954
No 426
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=93.58 E-value=0.14 Score=42.49 Aligned_cols=33 Identities=30% Similarity=0.502 Sum_probs=29.8
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhCCC--cEEEEeccC
Q 010001 29 PSVIVIGA-GMAGVAAARALHDASF--KVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGa-GisGLsaA~~L~~~G~--~V~vlE~~~ 61 (520)
++|+|||+ |-.|.+.|+.|...+. ++.++|.+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 48999999 9999999999999975 799999864
No 427
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=93.49 E-value=0.28 Score=50.90 Aligned_cols=41 Identities=27% Similarity=0.276 Sum_probs=35.6
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecC
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP 306 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p 306 (520)
.|+++++++.++.|..++....|..+||..+.||-||+|+.
T Consensus 200 ~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~G 240 (793)
T COG1251 200 LGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVG 240 (793)
T ss_pred hcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecc
Confidence 58899999999888885555689999999999999999994
No 428
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=93.46 E-value=0.087 Score=50.10 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=29.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
++|+|+|+|..|...|++|+++|++|+++=+.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 579999999999999999999998888886644
No 429
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=93.39 E-value=0.11 Score=53.37 Aligned_cols=35 Identities=34% Similarity=0.503 Sum_probs=31.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
-.+|.|||+|..|...|..|+++|++|+++|++..
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 35799999999999999999999999999997653
No 430
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=93.39 E-value=0.21 Score=37.38 Aligned_cols=33 Identities=39% Similarity=0.595 Sum_probs=30.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhC-CCcEEEEec
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDA-SFKVVLLES 59 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~-G~~V~vlE~ 59 (520)
...+++|+|+|..|..+|..|.+. +.+|.++++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 457899999999999999999999 678999988
No 431
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.36 E-value=1.3 Score=46.47 Aligned_cols=49 Identities=16% Similarity=0.118 Sum_probs=34.4
Q ss_pred HHHHHHh-ccCCeecCceeEEEEEe-CCeE-EEE---EcCCc--EEEcCEEEEecCh
Q 010001 259 PVINTLA-KGLDIRLGHRVTKITRH-YIGV-KVT---VEGGK--TFVADAVVVAVPL 307 (520)
Q Consensus 259 ~l~~~L~-~gv~i~~~~~V~~I~~~-~~~v-~V~---~~~g~--~~~ad~VI~a~p~ 307 (520)
.+.+++. .|++++.++.+.++..+ +++| .|. ..+|+ .+.|+.||+|+.-
T Consensus 131 ~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 187 (570)
T PRK05675 131 TLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGG 187 (570)
T ss_pred HHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCC
Confidence 3444333 48999999999999985 4554 343 24565 5689999999953
No 432
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=93.33 E-value=0.14 Score=45.31 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+.|+|+|.|-.|..+|..|.+.|++|++.|.+.
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 34789999999999999999999999999998753
No 433
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=93.23 E-value=0.13 Score=46.46 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=28.7
Q ss_pred CeEEEEc-CCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 29 PSVIVIG-AGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 29 ~dv~IIG-aGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
++|.||| +|.-|.+.|..|+++|++|.++.++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 4699997 7999999999999999999998663
No 434
>PRK06223 malate dehydrogenase; Reviewed
Probab=93.17 E-value=0.14 Score=48.97 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=30.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASF-KVVLLESRDR 62 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~~~ 62 (520)
++|+|||||..|.+.|+.|+..|+ +|.++|.+..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 699999999999999999999876 9999998543
No 435
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.17 E-value=0.14 Score=42.25 Aligned_cols=33 Identities=30% Similarity=0.562 Sum_probs=29.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~ 60 (520)
+.+|+|||+|-.|...|..|++.|. +++|+|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 4689999999999999999999998 79999984
No 436
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.08 E-value=0.13 Score=52.18 Aligned_cols=37 Identities=24% Similarity=0.432 Sum_probs=33.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
|+.+--|+|||.|-+|+++|..|.++|++|++.|...
T Consensus 3 ~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 3 MQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred cccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 4556789999999999999999999999999999754
No 437
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=93.05 E-value=0.18 Score=48.34 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~~~ 62 (520)
...+|+|||||-.|.+.|+.|+..|+ +|.++|.+..
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 45799999999999999999999996 8999998664
No 438
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.04 E-value=0.16 Score=48.37 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=31.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~--~V~vlE~~~ 61 (520)
++.+|+|||+|-.|.++|+.|+..|. ++.++|.+.
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 45799999999999999999999876 799999864
No 439
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.91 E-value=0.14 Score=52.29 Aligned_cols=33 Identities=33% Similarity=0.498 Sum_probs=30.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
..+|.|+|.|-+|+++|..|.++|.+|++.|+.
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 457999999999999999999999999999974
No 440
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.90 E-value=0.13 Score=52.90 Aligned_cols=33 Identities=30% Similarity=0.533 Sum_probs=30.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..|.|||.|.+|+++|..|.++|++|.+.|...
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 579999999999999999999999999999754
No 441
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=92.88 E-value=0.17 Score=47.95 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
...+|+|||.|..|..+|..|.+.|.+|++++++.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 46899999999999999999999999999999864
No 442
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=92.75 E-value=0.16 Score=51.69 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~ 60 (520)
...+|+|||||.+|+-+|..|.+.|. +|+|+++.
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~ 306 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR 306 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 45799999999999999999999998 89999874
No 443
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=92.68 E-value=0.089 Score=51.50 Aligned_cols=39 Identities=36% Similarity=0.488 Sum_probs=32.4
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCc-EEEcCEEEEecChh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGK-TFVADAVVVAVPLG 308 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~-~~~ad~VI~a~p~~ 308 (520)
.||++++++.|++|+.++ |++.+|. ++.++.||.|+...
T Consensus 222 ~GV~v~l~~~Vt~v~~~~----v~~~~g~~~I~~~tvvWaaGv~ 261 (405)
T COG1252 222 LGVEVLLGTPVTEVTPDG----VTLKDGEEEIPADTVVWAAGVR 261 (405)
T ss_pred CCCEEEcCCceEEECCCc----EEEccCCeeEecCEEEEcCCCc
Confidence 599999999999988755 5666776 59999999998654
No 444
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=92.65 E-value=0.14 Score=48.10 Aligned_cols=33 Identities=36% Similarity=0.481 Sum_probs=30.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
-.+|+|||||..|-..|+.++..|++|+++|.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 368999999999999999999988999999996
No 445
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=92.58 E-value=0.21 Score=47.72 Aligned_cols=36 Identities=22% Similarity=0.468 Sum_probs=32.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEeccC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~--~V~vlE~~~ 61 (520)
+...+|+|||+|-.|-++|+.|+..|. ++.++|.+.
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 456799999999999999999999987 799999854
No 446
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.55 E-value=0.13 Score=55.20 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=32.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
-.+|+|||||..|...|..++.+|++|+++|.+..
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 35799999999999999999999999999998753
No 447
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.52 E-value=0.19 Score=49.56 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
....|+|+|+|..|+.+|..|...|.+|+|+|..+
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 46799999999999999999999999999998864
No 448
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=92.46 E-value=0.18 Score=54.77 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCc-EEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFK-VVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~-V~vlE~~~ 61 (520)
...+|+|||||.+|+-+|..|.+.|.+ |+|+++.+
T Consensus 569 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 569 FGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 457999999999999999999999997 99998743
No 449
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=92.46 E-value=0.2 Score=47.17 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~~ 61 (520)
...+|+|||+|-+|-++|+.|++.|. +|+|++++.
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 34789999999999999999999998 799998853
No 450
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=92.44 E-value=0.21 Score=45.27 Aligned_cols=34 Identities=38% Similarity=0.619 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCc---EEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFK---VVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~---V~vlE~~ 60 (520)
...+|+|+|||-+|..+|..|.+.|.+ |.|++++
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 457899999999999999999999974 8888885
No 451
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.43 E-value=0.2 Score=50.77 Aligned_cols=36 Identities=36% Similarity=0.489 Sum_probs=32.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
.+..+|+|+|+|..|+.++..+...|.+|+++|.+.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 346899999999999999999999999999998853
No 452
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=92.41 E-value=0.19 Score=47.94 Aligned_cols=32 Identities=31% Similarity=0.534 Sum_probs=29.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhCC--CcEEEEeccC
Q 010001 30 SVIVIGAGMAGVAAARALHDAS--FKVVLLESRD 61 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~~~G--~~V~vlE~~~ 61 (520)
+|+|||+|-.|.++|+.|+.+| .++.++|++.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 7999999999999999999999 5899999864
No 453
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=92.33 E-value=0.16 Score=54.35 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+-.+|+|||||..|...|..++.+|++|+++|.+.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 44689999999999999999999999999999865
No 454
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=92.29 E-value=0.21 Score=46.13 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~ 60 (520)
...+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 45799999999999999999999995 89999974
No 455
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=92.27 E-value=0.2 Score=47.68 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=30.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
++|.|||.|..|...|..|++.|++|.+++++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 579999999999999999999999999998754
No 456
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=92.23 E-value=0.21 Score=47.09 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
...+|+|||.|-.|.+.|..|+..|.+|+|++++.
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35799999999999999999999999999999864
No 457
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.22 E-value=0.13 Score=48.20 Aligned_cols=33 Identities=42% Similarity=0.480 Sum_probs=27.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEec
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLES 59 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~ 59 (520)
..+||+|||||-||+-||.-|+--=..|+++|=
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF 385 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEF 385 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhhhheeeeeec
Confidence 468999999999999999999844347888875
No 458
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.08 E-value=0.27 Score=39.12 Aligned_cols=32 Identities=28% Similarity=0.537 Sum_probs=28.3
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 31 v~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
|+|+|.|-.|...|..|.+.+.+|+++|.++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 78999999999999999997779999999753
No 459
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.08 E-value=0.18 Score=50.17 Aligned_cols=31 Identities=19% Similarity=0.211 Sum_probs=28.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
++|.|||.|-+|+++|..|. +|.+|++.|..
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~ 31 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDK 31 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCC
Confidence 46899999999999999999 99999999954
No 460
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.00 E-value=0.19 Score=50.47 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=30.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
.+|+|||-|.+|+++|..|.++|++|++.|.+.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 479999999999999999999999999999754
No 461
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=91.90 E-value=0.23 Score=48.84 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=31.9
Q ss_pred CCCCeEEEEc-CCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 26 ARSPSVIVIG-AGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 26 ~~~~dv~IIG-aGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
+...+|+||| .|..|-+.|..|.++|++|+++++.
T Consensus 96 ~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 96 PDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 3557899999 8999999999999999999999974
No 462
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=91.87 E-value=0.18 Score=47.88 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=29.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48999999999999999999999999998864
No 463
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.86 E-value=0.2 Score=51.03 Aligned_cols=32 Identities=34% Similarity=0.501 Sum_probs=30.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
.+|.|||.|-+|+++|.+|.++|++|.+.|..
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~ 41 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDN 41 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence 57999999999999999999999999999964
No 464
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=91.70 E-value=0.19 Score=54.09 Aligned_cols=34 Identities=29% Similarity=0.483 Sum_probs=31.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
-.+|+|||||..|...|..++.+|++|+++|.++
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 3679999999999999999999999999999865
No 465
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=91.59 E-value=0.11 Score=49.39 Aligned_cols=40 Identities=28% Similarity=0.449 Sum_probs=36.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCc
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG 65 (520)
.-+.+.+|||||+.||-.+..-.+.|-+|+++|..+.+||
T Consensus 209 ~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~ 248 (506)
T KOG1335|consen 209 EVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGG 248 (506)
T ss_pred hCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcc
Confidence 3457899999999999999999999999999999887766
No 466
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=91.56 E-value=0.23 Score=54.49 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=31.2
Q ss_pred CCeEEEEcCCHHHHHH-HHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAA-ARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsa-A~~L~~~G~~V~vlE~~~ 61 (520)
...|.|||.|-+|+++ |..|.++|++|++.|.+.
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~ 38 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSE 38 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCC
Confidence 4579999999999999 999999999999999754
No 467
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=91.47 E-value=0.34 Score=42.81 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=30.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHhCCCcEEEEecc
Q 010001 27 RSPSVIVIGA-GMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGa-GisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
...+++|+|| |-.|..+|..|++.|++|+++.++
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3578999997 999999999999999999999764
No 468
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=91.39 E-value=0.24 Score=47.18 Aligned_cols=31 Identities=35% Similarity=0.523 Sum_probs=28.5
Q ss_pred EEEEcCCHHHHHHHHHHHhCCC-cEEEEeccC
Q 010001 31 VIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (520)
Q Consensus 31 v~IIGaGisGLsaA~~L~~~G~-~V~vlE~~~ 61 (520)
|+|||||..|.++|+.|+.+|. +|+++|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 6899999999999999999887 999999864
No 469
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=91.35 E-value=0.27 Score=46.74 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=30.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
.+|.|||.|.-|...|..|+++|++|++++++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 379999999999999999999999999998854
No 470
>PTZ00117 malate dehydrogenase; Provisional
Probab=91.33 E-value=0.33 Score=46.55 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCC-CcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G-~~V~vlE~~~ 61 (520)
..++|+|||||-.|-+.|+.|+..| .++.++|.+.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 4579999999999999999999998 5899999864
No 471
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=91.32 E-value=0.24 Score=50.22 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=31.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
...+|+|||+|.+|+-.|..|++.+.+|+++.+.
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~ 236 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRA 236 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEee
Confidence 3578999999999999999999999999999774
No 472
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.32 E-value=0.28 Score=49.68 Aligned_cols=34 Identities=18% Similarity=0.414 Sum_probs=31.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+|.|||-|-+|++++..|+++|++|++.|...
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~ 39 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI 39 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 3579999999999999999999999999999754
No 473
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=91.24 E-value=0.27 Score=52.67 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=31.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHH-hCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALH-DASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~-~~G~~V~vlE~~~ 61 (520)
+-.+|+|||||..|...|..++ ++|++|+++|.++
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 3468999999999999999998 5899999999865
No 474
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=91.21 E-value=0.35 Score=43.31 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=30.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~ 60 (520)
..+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 5789999999999999999999998 59999884
No 475
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=91.13 E-value=0.31 Score=46.40 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=30.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
++|.|||.|..|.+.|..|+++|++|.+++++.
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~ 33 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQ 33 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCH
Confidence 379999999999999999999999999998864
No 476
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.05 E-value=0.35 Score=41.75 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=28.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCC-cEEEEecc
Q 010001 30 SVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~ 60 (520)
+|+|||+|-.|...|..|++.|. +++++|..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999999999 59999984
No 477
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=91.05 E-value=0.27 Score=50.08 Aligned_cols=34 Identities=24% Similarity=0.494 Sum_probs=31.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
++|+|+|+|..|...|..|.++|++|+++|++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 4799999999999999999999999999998653
No 478
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=91.04 E-value=0.36 Score=45.22 Aligned_cols=34 Identities=32% Similarity=0.423 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
...+++|+|+|-+|.++|+.|++.|.+|+|+.++
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3568999999999999999999999999999875
No 479
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.00 E-value=0.34 Score=46.83 Aligned_cols=33 Identities=33% Similarity=0.544 Sum_probs=30.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~ 60 (520)
..+|+|||+|-.|..+|..|++.|+ +++|+|..
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 5789999999999999999999998 89999984
No 480
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=90.97 E-value=0.32 Score=53.88 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
...+|+|||||-+|+-||..+.+.|.+|+++.+.+
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 35799999999999999999999999999998754
No 481
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=90.97 E-value=0.26 Score=40.43 Aligned_cols=31 Identities=29% Similarity=0.495 Sum_probs=27.3
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 31 VIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 31 v~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
++|+|||..|.+.|..++..|++|+|+|-.+
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 5899999999999999999999999999864
No 482
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=90.93 E-value=0.28 Score=49.55 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=31.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
.+|.|||.|..|.+.|..|+++|++|.|++++..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 5899999999999999999999999999998653
No 483
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=90.93 E-value=0.43 Score=40.29 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCC-CcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G-~~V~vlE~~~ 61 (520)
...+++|||+|..|.+.|..|.+.| .+|.+++++.
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 3578999999999999999999996 7899998753
No 484
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.91 E-value=0.27 Score=52.73 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=31.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHH-hCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALH-DASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~-~~G~~V~vlE~~~ 61 (520)
-.+|+|||||..|...|..++ ..|++|+++|.+.
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 468999999999999999999 8899999999864
No 485
>PLN02256 arogenate dehydrogenase
Probab=90.90 E-value=0.41 Score=45.50 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=31.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
...++|+|||.|..|-+.|..|.+.|++|.+++++.
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence 355789999999999999999999999999998753
No 486
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.90 E-value=0.36 Score=46.66 Aligned_cols=34 Identities=38% Similarity=0.588 Sum_probs=31.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~ 60 (520)
...+|+|||+|--|..+|..|++.|. +++|+|..
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35789999999999999999999999 89999984
No 487
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=90.84 E-value=0.45 Score=34.94 Aligned_cols=34 Identities=29% Similarity=0.526 Sum_probs=28.0
Q ss_pred HHHHHh-ccCCeecCceeEEEEEeCCeEEEEEcCC
Q 010001 260 VINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGG 293 (520)
Q Consensus 260 l~~~L~-~gv~i~~~~~V~~I~~~~~~v~V~~~~g 293 (520)
+.+.|. +|+++++++.|.+|+.+++++.|+++||
T Consensus 46 ~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 46 LEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp HHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 344453 5999999999999999998877888886
No 488
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=90.83 E-value=0.34 Score=42.46 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=28.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEe
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLE 58 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE 58 (520)
++.+.|+|+|--|.+.|..|+++|++|+|-=
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs 31 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGS 31 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEec
Confidence 3689999999999999999999999999873
No 489
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=90.82 E-value=0.28 Score=49.57 Aligned_cols=32 Identities=28% Similarity=0.531 Sum_probs=29.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+|.|||.|-+|+++|..|.++|++|++.|...
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~ 32 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKP 32 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCC
Confidence 47899999999999999999999999999754
No 490
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=90.71 E-value=0.35 Score=45.03 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=31.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
.+|++||-|..|...|..|.++|++|+|++++..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ 34 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPE 34 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChh
Confidence 4799999999999999999999999999999754
No 491
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=90.56 E-value=0.41 Score=47.15 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
....|+|||.|..|+.+|..|...|.+|+|+|..+
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 46799999999999999999999999999999754
No 492
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=90.55 E-value=0.2 Score=40.55 Aligned_cols=35 Identities=46% Similarity=0.473 Sum_probs=27.9
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEec
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLES 59 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~ 59 (520)
...+.+|.|||+|-.|-+.|..|.++|+.|.-+..
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~s 41 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALARAGHEVVGVYS 41 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHHTTSEEEEESS
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEe
Confidence 45689999999999999999999999999877754
No 493
>PRK06849 hypothetical protein; Provisional
Probab=90.53 E-value=0.41 Score=47.56 Aligned_cols=37 Identities=30% Similarity=0.448 Sum_probs=33.2
Q ss_pred CCCCeEEEEcCCH-HHHHHHHHHHhCCCcEEEEeccCC
Q 010001 26 ARSPSVIVIGAGM-AGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 26 ~~~~dv~IIGaGi-sGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
..+++|+|+|++. .||..|+.|.++|++|++++.+..
T Consensus 2 ~~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~ 39 (389)
T PRK06849 2 NTKKTVLITGARAPAALELARLFHNAGHTVILADSLKY 39 (389)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 3568999999998 699999999999999999998753
No 494
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=90.50 E-value=0.47 Score=43.48 Aligned_cols=37 Identities=35% Similarity=0.581 Sum_probs=33.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
.+...++|+|||..+...|..+...|++|+|+|..+.
T Consensus 98 ~p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 98 PPAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 4678999999999999999999999999999996543
No 495
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.49 E-value=0.38 Score=45.74 Aligned_cols=32 Identities=28% Similarity=0.509 Sum_probs=28.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCC--cEEEEeccC
Q 010001 30 SVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~~~G~--~V~vlE~~~ 61 (520)
+|+|||+|-.|.++|+.|...|. ++.++|.+.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 34 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNE 34 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 58999999999999999999886 799999753
No 496
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=90.46 E-value=0.42 Score=43.86 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~ 60 (520)
.+.+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 35799999999999999999999997 79999873
No 497
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=90.42 E-value=0.47 Score=44.28 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
..+.|+|||.|..|-+-|..|.++|+.|.|+.+...
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~ 37 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRS 37 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCc
Confidence 357899999999999999999999999999988544
No 498
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=90.31 E-value=0.42 Score=48.84 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=31.1
Q ss_pred CCCCcEEEeeccccCcCCccchHHHHHHHHHHHHHHHHHH
Q 010001 453 IPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 492 (520)
Q Consensus 453 ~p~~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~~l~ 492 (520)
+..+|+|.+||..... ..+..|+..|..||..|...|.
T Consensus 428 Ts~~gVfa~GD~~~g~--~~~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 428 TSNPKVFAAGDMRRGQ--SLVVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred CCCCCEEEccccCCCc--hhHHHHHHHHHHHHHHHHHHHh
Confidence 4568999999997642 3566799999999999988875
No 499
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=90.28 E-value=0.44 Score=43.58 Aligned_cols=33 Identities=30% Similarity=0.494 Sum_probs=30.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~ 60 (520)
..+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 5799999999999999999999997 78888874
No 500
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=90.25 E-value=0.5 Score=44.69 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCc-EEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFK-VVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~-V~vlE~~~ 61 (520)
+...++|+|||=+|.++|+.|++.|.+ |+|+.++.
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 346899999999999999999999986 99998753
Done!