Query 010001
Match_columns 520
No_of_seqs 165 out of 2217
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 17:42:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010001.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010001hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1s3e_A Amine oxidase [flavin-c 100.0 5.8E-46 2E-50 382.3 37.6 431 26-493 2-456 (520)
2 2yg5_A Putrescine oxidase; oxi 100.0 5.5E-44 1.9E-48 361.9 34.8 427 27-491 4-451 (453)
3 2z3y_A Lysine-specific histone 100.0 6.7E-42 2.3E-46 359.3 44.7 451 26-491 105-658 (662)
4 4gut_A Lysine-specific histone 100.0 4.4E-42 1.5E-46 362.1 42.7 425 27-489 335-775 (776)
5 2vvm_A Monoamine oxidase N; FA 100.0 8.8E-43 3E-47 356.9 36.3 422 29-492 40-486 (495)
6 2xag_A Lysine-specific histone 100.0 8.3E-42 2.8E-46 361.8 43.9 452 26-492 276-830 (852)
7 1rsg_A FMS1 protein; FAD bindi 100.0 6.6E-42 2.3E-46 351.3 38.1 424 27-494 7-510 (516)
8 1b37_A Protein (polyamine oxid 100.0 3.2E-40 1.1E-44 335.3 43.3 426 27-493 3-460 (472)
9 2iid_A L-amino-acid oxidase; f 100.0 7.1E-40 2.4E-44 335.6 33.4 420 26-492 31-485 (498)
10 3k7m_X 6-hydroxy-L-nicotine ox 100.0 1.6E-39 5.4E-44 327.1 34.5 409 28-489 1-424 (431)
11 3i6d_A Protoporphyrinogen oxid 100.0 9.9E-40 3.4E-44 332.6 28.4 416 27-491 4-468 (470)
12 2jae_A L-amino acid oxidase; o 100.0 4.9E-38 1.7E-42 321.2 38.0 424 25-494 8-488 (489)
13 2ivd_A PPO, PPOX, protoporphyr 100.0 4.7E-39 1.6E-43 328.0 26.5 403 26-493 14-475 (478)
14 3lov_A Protoporphyrinogen oxid 100.0 2.7E-38 9.2E-43 322.0 24.5 405 28-493 4-467 (475)
15 1sez_A Protoporphyrinogen oxid 100.0 4.1E-38 1.4E-42 323.1 22.6 405 25-492 10-494 (504)
16 3ka7_A Oxidoreductase; structu 100.0 3.1E-36 1.1E-40 302.6 27.6 396 29-488 1-424 (425)
17 3nks_A Protoporphyrinogen oxid 100.0 1.4E-36 4.9E-41 309.6 24.3 398 28-489 2-472 (477)
18 4gde_A UDP-galactopyranose mut 100.0 1.5E-36 5E-41 312.6 22.3 405 26-489 8-477 (513)
19 4dgk_A Phytoene dehydrogenase; 100.0 7E-36 2.4E-40 306.4 22.8 431 28-492 1-492 (501)
20 3qj4_A Renalase; FAD/NAD(P)-bi 100.0 2.6E-35 9E-40 286.7 25.6 226 252-490 106-341 (342)
21 3ayj_A Pro-enzyme of L-phenyla 100.0 1.1E-34 3.7E-39 298.8 23.9 243 249-493 338-681 (721)
22 4dsg_A UDP-galactopyranose mut 100.0 7.9E-34 2.7E-38 287.5 25.3 404 27-488 8-452 (484)
23 3nrn_A Uncharacterized protein 100.0 1.5E-33 5.3E-38 282.2 25.7 386 29-487 1-403 (421)
24 2b9w_A Putative aminooxidase; 100.0 3.1E-30 1.1E-34 258.6 24.8 403 26-488 4-423 (424)
25 1yvv_A Amine oxidase, flavin-c 100.0 4.6E-28 1.6E-32 235.2 28.9 319 28-490 2-326 (336)
26 1v0j_A UDP-galactopyranose mut 99.9 7.2E-27 2.4E-31 230.9 15.1 254 25-348 4-274 (399)
27 1i8t_A UDP-galactopyranose mut 99.9 4E-26 1.4E-30 222.8 17.2 243 28-350 1-262 (367)
28 2bi7_A UDP-galactopyranose mut 99.9 6.7E-25 2.3E-29 215.3 21.4 242 28-345 3-260 (384)
29 3hdq_A UDP-galactopyranose mut 99.9 4.6E-24 1.6E-28 207.6 21.6 340 25-489 26-389 (397)
30 2bcg_G Secretory pathway GDP d 99.9 1.7E-21 5.7E-26 195.9 20.0 243 25-308 8-299 (453)
31 3kkj_A Amine oxidase, flavin-c 99.8 3.7E-18 1.3E-22 161.7 27.9 59 27-85 1-59 (336)
32 1d5t_A Guanine nucleotide diss 99.8 6E-19 2.1E-23 176.1 17.7 242 25-309 3-290 (433)
33 3p1w_A Rabgdi protein; GDI RAB 99.8 2.1E-19 7.2E-24 178.1 12.9 238 25-308 17-313 (475)
34 2e1m_A L-glutamate oxidase; L- 99.8 5.3E-18 1.8E-22 163.5 17.0 81 25-107 41-132 (376)
35 2e1m_C L-glutamate oxidase; L- 99.6 1.2E-15 4.2E-20 131.7 9.3 112 378-491 37-152 (181)
36 3nyc_A D-arginine dehydrogenas 99.5 4.8E-12 1.6E-16 124.4 23.5 51 258-309 158-209 (381)
37 1vg0_A RAB proteins geranylger 99.5 3E-13 1E-17 138.0 13.7 57 248-304 368-432 (650)
38 3oz2_A Digeranylgeranylglycero 99.5 6.1E-12 2.1E-16 124.2 23.1 39 28-66 4-42 (397)
39 3ihg_A RDME; flavoenzyme, anth 99.4 1.2E-11 4.2E-16 127.0 21.4 38 27-64 4-41 (535)
40 3rp8_A Flavoprotein monooxygen 99.4 8.6E-12 2.9E-16 123.7 19.0 48 261-309 134-181 (407)
41 3ps9_A TRNA 5-methylaminomethy 99.4 3E-12 1E-16 135.2 16.3 52 258-309 421-473 (676)
42 3dme_A Conserved exported prot 99.4 2.7E-12 9.2E-17 125.5 13.7 44 26-69 2-45 (369)
43 3v76_A Flavoprotein; structura 99.4 2E-12 6.8E-17 127.6 12.2 42 26-67 25-66 (417)
44 3dje_A Fructosyl amine: oxygen 99.4 7.8E-12 2.7E-16 125.3 16.7 52 258-309 165-221 (438)
45 1ryi_A Glycine oxidase; flavop 99.4 3.4E-11 1.2E-15 118.3 20.9 49 260-309 170-219 (382)
46 3cgv_A Geranylgeranyl reductas 99.4 1E-10 3.4E-15 115.6 23.2 38 28-65 4-41 (397)
47 2oln_A NIKD protein; flavoprot 99.3 3.8E-10 1.3E-14 111.4 26.5 50 258-308 157-207 (397)
48 3pvc_A TRNA 5-methylaminomethy 99.3 2.2E-11 7.4E-16 128.7 17.9 52 258-309 416-469 (689)
49 2gf3_A MSOX, monomeric sarcosi 99.3 1.4E-10 4.8E-15 114.2 22.5 49 260-309 156-205 (389)
50 2qa1_A PGAE, polyketide oxygen 99.3 3.6E-10 1.2E-14 114.6 25.8 40 25-64 8-47 (500)
51 3i3l_A Alkylhalidase CMLS; fla 99.3 8.3E-11 2.8E-15 121.1 20.9 38 28-65 23-60 (591)
52 3fmw_A Oxygenase; mithramycin, 99.3 6.4E-11 2.2E-15 121.7 19.7 44 266-309 161-207 (570)
53 2qa2_A CABE, polyketide oxygen 99.3 3.3E-10 1.1E-14 114.7 23.8 44 266-309 120-166 (499)
54 3nix_A Flavoprotein/dehydrogen 99.3 1.2E-10 4.1E-15 116.0 20.2 44 266-309 119-166 (421)
55 3atr_A Conserved archaeal prot 99.3 2.5E-10 8.4E-15 114.7 19.9 38 26-63 4-41 (453)
56 3e1t_A Halogenase; flavoprotei 99.2 1E-10 3.4E-15 119.3 16.6 37 27-63 6-42 (512)
57 1y56_B Sarcosine oxidase; dehy 99.2 5.9E-11 2E-15 116.6 14.4 50 259-309 154-205 (382)
58 2qcu_A Aerobic glycerol-3-phos 99.2 3.5E-10 1.2E-14 114.9 20.4 38 28-65 3-40 (501)
59 1w4x_A Phenylacetone monooxyge 99.2 5.2E-11 1.8E-15 122.2 14.2 53 26-78 14-66 (542)
60 4ap3_A Steroid monooxygenase; 99.2 4.6E-11 1.6E-15 122.2 13.5 57 26-82 19-75 (549)
61 2uzz_A N-methyl-L-tryptophan o 99.2 4.2E-11 1.4E-15 117.2 12.5 51 258-309 153-204 (372)
62 3da1_A Glycerol-3-phosphate de 99.2 5E-11 1.7E-15 122.4 12.9 42 27-68 17-58 (561)
63 2vou_A 2,6-dihydroxypyridine h 99.2 1.8E-10 6.2E-15 113.6 16.2 44 266-309 110-153 (397)
64 2gqf_A Hypothetical protein HI 99.2 3.9E-11 1.3E-15 118.0 11.0 40 28-67 4-43 (401)
65 4hb9_A Similarities with proba 99.2 4.1E-10 1.4E-14 111.7 18.2 43 267-309 123-166 (412)
66 2i0z_A NAD(FAD)-utilizing dehy 99.2 5.3E-11 1.8E-15 119.2 11.7 42 26-67 24-65 (447)
67 2xdo_A TETX2 protein; tetracyc 99.2 1.6E-10 5.4E-15 114.1 14.6 44 267-310 140-183 (398)
68 3gwf_A Cyclohexanone monooxyge 99.2 1E-10 3.5E-15 119.4 12.5 53 27-79 7-60 (540)
69 2gag_B Heterotetrameric sarcos 99.2 3.6E-11 1.2E-15 119.1 8.7 51 258-309 178-230 (405)
70 2gmh_A Electron transfer flavo 99.2 1.7E-09 5.7E-14 111.7 20.8 42 26-67 33-80 (584)
71 4at0_A 3-ketosteroid-delta4-5a 99.2 4.3E-10 1.5E-14 114.5 16.1 42 27-68 40-81 (510)
72 1y0p_A Fumarate reductase flav 99.1 8.3E-10 2.8E-14 114.1 17.1 43 26-68 124-166 (571)
73 1qo8_A Flavocytochrome C3 fuma 99.1 6.6E-10 2.3E-14 114.6 16.2 43 26-68 119-161 (566)
74 3nlc_A Uncharacterized protein 99.1 1.3E-10 4.6E-15 117.7 10.7 42 26-67 105-146 (549)
75 2zbw_A Thioredoxin reductase; 99.1 2.3E-10 7.9E-15 110.2 11.9 42 27-68 4-45 (335)
76 2gv8_A Monooxygenase; FMO, FAD 99.1 8.4E-10 2.9E-14 110.6 15.0 44 26-69 4-49 (447)
77 3ab1_A Ferredoxin--NADP reduct 99.1 3.7E-10 1.3E-14 109.9 11.8 43 26-68 12-54 (360)
78 4a9w_A Monooxygenase; baeyer-v 99.1 4.5E-10 1.5E-14 109.0 12.1 41 28-68 3-43 (357)
79 3uox_A Otemo; baeyer-villiger 99.1 1.5E-10 5.2E-15 118.3 8.9 53 27-79 8-60 (545)
80 2x3n_A Probable FAD-dependent 99.1 3.5E-10 1.2E-14 111.7 10.4 50 260-309 113-166 (399)
81 1rp0_A ARA6, thiazole biosynth 99.1 6.8E-10 2.3E-14 103.9 11.4 41 27-67 38-79 (284)
82 3f8d_A Thioredoxin reductase ( 99.1 8.3E-10 2.8E-14 105.6 12.0 42 266-308 83-124 (323)
83 1pj5_A N,N-dimethylglycine oxi 99.1 2.3E-09 8E-14 115.7 16.6 51 258-309 155-207 (830)
84 3lzw_A Ferredoxin--NADP reduct 99.0 6E-10 2.1E-14 107.0 10.6 41 28-68 7-47 (332)
85 3o0h_A Glutathione reductase; 99.0 1.8E-09 6.2E-14 109.2 13.4 48 261-308 239-287 (484)
86 2dkh_A 3-hydroxybenzoate hydro 99.0 1.3E-08 4.3E-13 106.4 19.6 38 26-63 30-68 (639)
87 3itj_A Thioredoxin reductase 1 99.0 9.8E-10 3.3E-14 105.8 10.2 44 25-68 19-66 (338)
88 3jsk_A Cypbp37 protein; octame 99.0 1.8E-09 6.1E-14 102.0 11.5 42 27-68 78-121 (344)
89 3c96_A Flavin-containing monoo 99.0 1.4E-09 4.9E-14 107.7 11.1 38 27-64 3-41 (410)
90 3axb_A Putative oxidoreductase 99.0 9.9E-10 3.4E-14 110.2 9.8 39 27-65 22-61 (448)
91 3alj_A 2-methyl-3-hydroxypyrid 99.0 3.3E-09 1.1E-13 103.9 13.0 38 28-65 11-48 (379)
92 4fk1_A Putative thioredoxin re 99.0 3.2E-09 1.1E-13 100.5 12.4 38 28-66 6-43 (304)
93 2q0l_A TRXR, thioredoxin reduc 99.0 4.3E-09 1.5E-13 100.0 13.2 40 28-68 1-41 (311)
94 2q7v_A Thioredoxin reductase; 99.0 3.6E-09 1.2E-13 101.3 11.9 42 26-68 6-47 (325)
95 2r0c_A REBC; flavin adenine di 99.0 4.3E-09 1.5E-13 108.1 13.1 39 27-65 25-63 (549)
96 3cty_A Thioredoxin reductase; 99.0 4.2E-09 1.4E-13 100.5 12.3 43 25-68 13-55 (319)
97 4a5l_A Thioredoxin reductase; 98.9 4.4E-09 1.5E-13 100.1 11.7 41 25-66 1-41 (314)
98 2gjc_A Thiazole biosynthetic e 98.9 2.9E-09 9.9E-14 100.0 9.8 41 28-68 65-107 (326)
99 1d4d_A Flavocytochrome C fumar 98.9 1.9E-08 6.5E-13 103.7 16.9 42 27-68 125-166 (572)
100 2xve_A Flavin-containing monoo 98.9 7.5E-09 2.6E-13 103.9 13.4 42 28-69 2-49 (464)
101 1k0i_A P-hydroxybenzoate hydro 98.9 2.6E-09 9E-14 105.2 9.8 36 28-63 2-37 (394)
102 3d1c_A Flavin-containing putat 98.9 5.3E-09 1.8E-13 102.0 11.6 40 28-68 4-44 (369)
103 2cul_A Glucose-inhibited divis 98.9 9.6E-09 3.3E-13 93.0 12.3 41 267-308 83-124 (232)
104 3fbs_A Oxidoreductase; structu 98.9 5.4E-09 1.9E-13 98.6 10.9 36 27-62 1-36 (297)
105 2bry_A NEDD9 interacting prote 98.9 4E-09 1.4E-13 106.7 10.6 40 26-65 90-129 (497)
106 2ywl_A Thioredoxin reductase r 98.9 1.2E-08 4.3E-13 88.3 12.2 41 266-308 69-109 (180)
107 2rgh_A Alpha-glycerophosphate 98.9 3.4E-09 1.2E-13 109.0 9.9 40 27-66 31-70 (571)
108 3lxd_A FAD-dependent pyridine 98.9 9E-09 3.1E-13 102.0 12.5 43 266-308 207-250 (415)
109 3fpz_A Thiazole biosynthetic e 98.9 7.7E-10 2.6E-14 105.9 4.4 69 27-105 64-134 (326)
110 2zxi_A TRNA uridine 5-carboxym 98.9 4.6E-09 1.6E-13 106.9 9.2 39 27-65 26-65 (637)
111 3c4n_A Uncharacterized protein 98.9 3.3E-09 1.1E-13 104.8 7.9 38 28-65 36-75 (405)
112 3l8k_A Dihydrolipoyl dehydroge 98.9 1.7E-08 5.8E-13 101.6 13.1 43 26-68 2-44 (466)
113 1trb_A Thioredoxin reductase; 98.9 9.4E-09 3.2E-13 98.1 10.8 40 27-67 4-43 (320)
114 2a87_A TRXR, TR, thioredoxin r 98.8 1.2E-08 4E-13 98.2 11.3 42 25-67 11-52 (335)
115 2bs2_A Quinol-fumarate reducta 98.8 6.3E-08 2.2E-12 100.7 17.0 41 27-67 4-44 (660)
116 3ces_A MNMG, tRNA uridine 5-ca 98.8 6.6E-09 2.2E-13 106.2 9.0 42 267-309 139-181 (651)
117 3r9u_A Thioredoxin reductase; 98.8 1.7E-08 5.9E-13 95.9 11.4 41 27-68 3-44 (315)
118 1vdc_A NTR, NADPH dependent th 98.8 1.3E-08 4.5E-13 97.7 10.0 41 266-308 83-123 (333)
119 2wdq_A Succinate dehydrogenase 98.8 1.2E-07 4.3E-12 97.6 17.7 41 27-67 6-46 (588)
120 2h88_A Succinate dehydrogenase 98.8 9E-08 3.1E-12 98.8 16.2 41 27-67 17-57 (621)
121 3ics_A Coenzyme A-disulfide re 98.8 2.1E-08 7.2E-13 104.1 11.7 39 26-64 34-74 (588)
122 1fl2_A Alkyl hydroperoxide red 98.8 2.3E-08 7.8E-13 94.9 10.6 43 266-308 69-114 (310)
123 3s5w_A L-ornithine 5-monooxyge 98.8 2.4E-08 8.2E-13 100.6 11.2 39 27-65 29-72 (463)
124 3fg2_P Putative rubredoxin red 98.8 7.7E-08 2.6E-12 94.9 14.5 43 266-308 197-240 (404)
125 2e1m_B L-glutamate oxidase; L- 98.8 2.8E-10 9.5E-15 90.7 -2.8 108 294-416 4-112 (130)
126 2e5v_A L-aspartate oxidase; ar 98.8 8.5E-08 2.9E-12 96.3 14.3 36 30-66 1-36 (472)
127 1dxl_A Dihydrolipoamide dehydr 98.8 7.5E-08 2.5E-12 97.1 14.0 43 26-68 4-46 (470)
128 2weu_A Tryptophan 5-halogenase 98.7 7.7E-08 2.6E-12 98.1 13.8 43 266-309 186-230 (511)
129 4gcm_A TRXR, thioredoxin reduc 98.7 6.2E-09 2.1E-13 99.0 5.1 43 25-68 2-45 (312)
130 1hyu_A AHPF, alkyl hydroperoxi 98.7 4.2E-08 1.4E-12 99.9 11.6 40 26-67 210-249 (521)
131 1ojt_A Surface protein; redox- 98.7 4.8E-08 1.6E-12 98.7 11.9 44 25-68 3-46 (482)
132 3cp8_A TRNA uridine 5-carboxym 98.7 1.5E-08 5E-13 103.6 8.1 40 26-65 19-59 (641)
133 1pn0_A Phenol 2-monooxygenase; 98.7 9.7E-07 3.3E-11 92.4 21.8 36 27-62 7-47 (665)
134 2aqj_A Tryptophan halogenase, 98.7 1.2E-07 4E-12 97.3 14.2 43 266-309 178-222 (538)
135 1chu_A Protein (L-aspartate ox 98.7 5.3E-08 1.8E-12 99.4 11.1 40 27-67 7-46 (540)
136 1kf6_A Fumarate reductase flav 98.7 2.8E-07 9.5E-12 95.2 16.2 39 28-66 5-45 (602)
137 3ef6_A Toluene 1,2-dioxygenase 98.7 7.8E-08 2.7E-12 95.0 11.6 43 266-308 198-240 (410)
138 2e4g_A Tryptophan halogenase; 98.7 8.4E-08 2.9E-12 98.5 11.7 42 267-309 209-252 (550)
139 1ebd_A E3BD, dihydrolipoamide 98.7 1.4E-07 4.7E-12 94.6 12.4 41 27-68 2-42 (455)
140 3oc4_A Oxidoreductase, pyridin 98.6 6.8E-08 2.3E-12 96.8 9.8 36 29-64 3-40 (452)
141 1jnr_A Adenylylsulfate reducta 98.6 8.6E-07 3E-11 92.4 17.3 36 27-62 21-60 (643)
142 3iwa_A FAD-dependent pyridine 98.6 1.1E-07 3.6E-12 96.0 9.1 37 28-64 3-41 (472)
143 3klj_A NAD(FAD)-dependent dehy 98.6 3.4E-07 1.2E-11 89.3 12.3 38 26-63 7-44 (385)
144 3gyx_A Adenylylsulfate reducta 98.6 7.3E-07 2.5E-11 92.7 15.3 38 28-65 22-65 (662)
145 1c0p_A D-amino acid oxidase; a 98.6 5.5E-08 1.9E-12 94.6 6.2 41 25-65 3-43 (363)
146 1q1r_A Putidaredoxin reductase 98.5 4.7E-07 1.6E-11 89.9 12.3 37 26-62 2-40 (431)
147 3urh_A Dihydrolipoyl dehydroge 98.5 5.2E-08 1.8E-12 98.8 4.8 42 27-68 24-65 (491)
148 3ntd_A FAD-dependent pyridine 98.5 3.2E-07 1.1E-11 94.8 10.7 36 29-64 2-39 (565)
149 3h8l_A NADH oxidase; membrane 98.5 4.3E-07 1.5E-11 89.7 10.7 34 29-62 2-38 (409)
150 3k30_A Histamine dehydrogenase 98.5 1.3E-07 4.5E-12 99.7 6.1 45 25-69 388-432 (690)
151 3cgb_A Pyridine nucleotide-dis 98.4 3.6E-07 1.2E-11 92.2 8.9 41 267-307 107-150 (480)
152 4dna_A Probable glutathione re 98.4 9.4E-08 3.2E-12 96.1 4.5 41 27-68 4-44 (463)
153 2vdc_G Glutamate synthase [NAD 98.4 1.7E-07 5.8E-12 93.5 6.2 43 26-68 120-162 (456)
154 1mo9_A ORF3; nucleotide bindin 98.4 1.5E-07 5.1E-12 96.0 5.9 44 25-68 40-83 (523)
155 2bc0_A NADH oxidase; flavoprot 98.4 4.3E-07 1.5E-11 91.9 8.9 37 27-63 34-73 (490)
156 1nhp_A NADH peroxidase; oxidor 98.4 7.5E-07 2.6E-11 89.1 10.3 36 29-64 1-38 (447)
157 3qfa_A Thioredoxin reductase 1 98.4 1.7E-07 5.9E-12 95.4 5.4 44 25-68 29-80 (519)
158 2qae_A Lipoamide, dihydrolipoy 98.4 1.4E-07 4.8E-12 94.9 4.7 41 28-68 2-42 (468)
159 4b63_A L-ornithine N5 monooxyg 98.4 5.2E-07 1.8E-11 91.3 8.6 42 25-66 36-77 (501)
160 3lad_A Dihydrolipoamide dehydr 98.4 2.2E-07 7.4E-12 93.8 5.4 41 27-67 2-42 (476)
161 3g3e_A D-amino-acid oxidase; F 98.4 1.6E-07 5.3E-12 90.9 3.9 37 29-65 1-43 (351)
162 2r9z_A Glutathione amide reduc 98.4 1.9E-07 6.6E-12 93.7 4.6 42 26-68 2-43 (463)
163 1zk7_A HGII, reductase, mercur 98.4 2.4E-07 8.2E-12 93.3 5.3 42 26-68 2-43 (467)
164 1v59_A Dihydrolipoamide dehydr 98.3 1.4E-07 4.6E-12 95.4 3.0 42 27-68 4-45 (478)
165 1ges_A Glutathione reductase; 98.3 1.8E-07 6.2E-12 93.5 3.8 42 26-68 2-43 (450)
166 1zmd_A Dihydrolipoyl dehydroge 98.3 2E-07 6.8E-12 94.0 4.0 42 27-68 5-46 (474)
167 2wpf_A Trypanothione reductase 98.3 2E-07 6.9E-12 94.3 3.4 44 25-68 4-56 (495)
168 2yqu_A 2-oxoglutarate dehydrog 98.3 2.9E-07 1E-11 92.3 4.6 41 28-68 1-41 (455)
169 2v3a_A Rubredoxin reductase; a 98.3 6.8E-06 2.3E-10 80.3 14.3 43 266-308 200-242 (384)
170 3dgz_A Thioredoxin reductase 2 98.3 3E-07 1E-11 93.0 4.5 43 26-68 4-54 (488)
171 3dk9_A Grase, GR, glutathione 98.3 2.4E-07 8.3E-12 93.5 3.6 41 27-68 19-59 (478)
172 3ihm_A Styrene monooxygenase A 98.3 3.5E-07 1.2E-11 90.9 4.6 36 26-61 20-55 (430)
173 1o94_A Tmadh, trimethylamine d 98.3 5.4E-07 1.8E-11 95.5 6.3 44 26-69 387-430 (729)
174 2hqm_A GR, grase, glutathione 98.3 3.1E-07 1.1E-11 92.6 4.0 41 27-68 10-50 (479)
175 1fec_A Trypanothione reductase 98.3 4.1E-07 1.4E-11 92.0 4.5 48 260-307 237-286 (490)
176 3c4a_A Probable tryptophan hyd 98.3 6.2E-07 2.1E-11 87.6 5.5 35 29-63 1-37 (381)
177 1xdi_A RV3303C-LPDA; reductase 98.3 3E-07 1E-11 93.3 3.2 50 259-308 228-278 (499)
178 3ic9_A Dihydrolipoamide dehydr 98.3 3.9E-07 1.3E-11 92.2 4.0 40 28-68 8-47 (492)
179 1lvl_A Dihydrolipoamide dehydr 98.3 3.6E-07 1.2E-11 91.6 3.7 41 27-68 4-44 (458)
180 1onf_A GR, grase, glutathione 98.3 4.9E-07 1.7E-11 91.7 4.5 41 27-68 1-41 (500)
181 3dgh_A TRXR-1, thioredoxin red 98.2 6E-07 2E-11 90.7 5.0 43 26-68 7-58 (483)
182 3pl8_A Pyranose 2-oxidase; sub 98.2 8.3E-07 2.8E-11 92.0 5.3 41 27-67 45-85 (623)
183 2eq6_A Pyruvate dehydrogenase 98.2 1.8E-05 6.3E-10 79.3 14.0 42 266-307 223-269 (464)
184 3g5s_A Methylenetetrahydrofola 98.2 1.5E-06 5.2E-11 82.4 5.4 40 29-68 2-41 (443)
185 2eq6_A Pyruvate dehydrogenase 98.2 9.9E-07 3.4E-11 88.5 4.3 40 28-68 6-45 (464)
186 1ps9_A 2,4-dienoyl-COA reducta 98.2 1.7E-06 5.9E-11 90.9 6.2 43 26-68 371-413 (671)
187 2yqu_A 2-oxoglutarate dehydrog 98.1 2.1E-05 7.3E-10 78.6 13.9 43 266-308 221-263 (455)
188 2a8x_A Dihydrolipoyl dehydroge 98.1 9.8E-07 3.3E-11 88.7 4.1 40 28-68 3-42 (464)
189 2pyx_A Tryptophan halogenase; 98.1 2.1E-06 7.3E-11 87.6 5.4 43 266-309 189-233 (526)
190 1ges_A Glutathione reductase; 98.1 2.6E-05 8.9E-10 77.8 12.7 42 266-307 221-263 (450)
191 2r9z_A Glutathione amide reduc 98.1 3E-05 1E-09 77.6 13.2 42 266-307 220-262 (463)
192 3h28_A Sulfide-quinone reducta 98.1 2.2E-06 7.6E-11 85.1 4.6 39 28-66 2-42 (430)
193 1lqt_A FPRA; NADP+ derivative, 98.1 1.9E-06 6.6E-11 86.0 3.9 41 28-68 3-50 (456)
194 4b1b_A TRXR, thioredoxin reduc 98.0 2.1E-06 7.2E-11 87.1 4.2 47 260-306 269-316 (542)
195 1ju2_A HydroxynitrIle lyase; f 98.0 1.3E-06 4.5E-11 89.1 2.7 58 6-64 4-61 (536)
196 1gte_A Dihydropyrimidine dehyd 98.0 2.9E-06 9.8E-11 93.3 5.5 42 27-68 186-228 (1025)
197 2gag_A Heterotetrameric sarcos 98.0 2.7E-06 9.3E-11 92.8 5.0 41 28-68 128-168 (965)
198 1y56_A Hypothetical protein PH 98.0 1.9E-06 6.3E-11 87.2 3.1 41 28-69 108-148 (493)
199 1cjc_A Protein (adrenodoxin re 98.0 3.4E-06 1.2E-10 84.2 5.0 42 27-68 5-48 (460)
200 1ebd_A E3BD, dihydrolipoamide 98.0 5E-05 1.7E-09 75.9 13.5 37 27-63 169-205 (455)
201 1nhp_A NADH peroxidase; oxidor 98.0 3.8E-05 1.3E-09 76.6 12.4 37 27-63 148-184 (447)
202 2x8g_A Thioredoxin glutathione 98.0 3.1E-06 1.1E-10 87.9 4.5 34 26-59 105-138 (598)
203 3kd9_A Coenzyme A disulfide re 98.0 4.7E-06 1.6E-10 83.3 5.2 39 28-66 3-43 (449)
204 2hqm_A GR, grase, glutathione 97.9 5.8E-05 2E-09 76.0 12.6 42 266-307 239-283 (479)
205 3t37_A Probable dehydrogenase; 97.9 4.4E-06 1.5E-10 85.4 4.3 37 25-61 14-51 (526)
206 1v59_A Dihydrolipoamide dehydr 97.9 6.6E-05 2.3E-09 75.6 12.5 36 28-63 183-218 (478)
207 1q1r_A Putidaredoxin reductase 97.9 0.00013 4.3E-09 72.4 14.2 43 266-308 204-249 (431)
208 2gqw_A Ferredoxin reductase; f 97.9 0.00014 4.8E-09 71.4 14.2 36 27-62 144-179 (408)
209 2v3a_A Rubredoxin reductase; a 97.9 8.2E-06 2.8E-10 79.7 5.0 36 26-61 2-39 (384)
210 1kdg_A CDH, cellobiose dehydro 97.9 8.6E-06 3E-10 83.5 5.4 37 26-62 5-41 (546)
211 1zmd_A Dihydrolipoyl dehydroge 97.9 0.00012 4E-09 73.6 13.7 36 28-63 178-213 (474)
212 1ojt_A Surface protein; redox- 97.9 4.9E-05 1.7E-09 76.6 10.8 42 266-307 239-284 (482)
213 1xdi_A RV3303C-LPDA; reductase 97.9 0.00012 4E-09 74.1 13.7 37 27-63 181-217 (499)
214 1m6i_A Programmed cell death p 97.9 7.1E-06 2.4E-10 82.9 4.6 49 260-308 232-281 (493)
215 1onf_A GR, grase, glutathione 97.9 8.5E-05 2.9E-09 75.2 12.4 42 266-307 230-273 (500)
216 2cdu_A NADPH oxidase; flavoenz 97.9 9.2E-06 3.1E-10 81.2 5.1 37 29-65 1-39 (452)
217 3sx6_A Sulfide-quinone reducta 97.9 8.2E-06 2.8E-10 81.2 4.7 36 27-62 3-41 (437)
218 2gqw_A Ferredoxin reductase; f 97.9 1E-05 3.5E-10 79.6 5.2 39 26-64 5-45 (408)
219 3iwa_A FAD-dependent pyridine 97.9 0.00013 4.4E-09 73.3 13.3 42 266-307 215-256 (472)
220 3ic9_A Dihydrolipoamide dehydr 97.9 8.7E-05 3E-09 74.9 12.1 36 27-62 173-208 (492)
221 2wpf_A Trypanothione reductase 97.8 9.9E-05 3.4E-09 74.5 12.2 42 266-307 248-290 (495)
222 2a8x_A Dihydrolipoyl dehydroge 97.8 0.00012 4.1E-09 73.4 12.5 36 27-62 170-205 (464)
223 1mo9_A ORF3; nucleotide bindin 97.8 9.4E-05 3.2E-09 75.3 11.9 42 266-307 268-314 (523)
224 3oc4_A Oxidoreductase, pyridin 97.8 0.00017 5.8E-09 72.0 13.4 41 266-307 202-242 (452)
225 2qae_A Lipoamide, dihydrolipoy 97.8 0.00018 6.2E-09 72.1 13.5 43 266-308 229-275 (468)
226 1fec_A Trypanothione reductase 97.8 0.00011 3.8E-09 74.0 12.0 37 27-63 186-225 (490)
227 1lvl_A Dihydrolipoamide dehydr 97.8 8.2E-05 2.8E-09 74.4 10.4 36 27-62 170-205 (458)
228 3ntd_A FAD-dependent pyridine 97.8 0.00018 6.3E-09 74.0 13.1 34 28-61 151-184 (565)
229 2cdu_A NADPH oxidase; flavoenz 97.8 0.00034 1.2E-08 69.8 14.3 35 28-62 149-183 (452)
230 1xhc_A NADH oxidase /nitrite r 97.7 2.1E-05 7.1E-10 76.2 4.7 36 27-63 7-42 (367)
231 4b1b_A TRXR, thioredoxin reduc 97.7 0.00023 7.8E-09 72.2 12.2 34 27-60 222-255 (542)
232 1dxl_A Dihydrolipoamide dehydr 97.7 0.0002 6.9E-09 71.9 11.8 36 27-62 176-211 (470)
233 2bc0_A NADH oxidase; flavoprot 97.7 0.00032 1.1E-08 70.7 13.1 36 27-62 193-228 (490)
234 3lad_A Dihydrolipoamide dehydr 97.7 0.00029 9.9E-09 70.8 12.6 42 266-307 234-278 (476)
235 1m6i_A Programmed cell death p 97.7 0.00036 1.2E-08 70.3 13.2 35 28-62 180-218 (493)
236 1zk7_A HGII, reductase, mercur 97.7 0.00029 1E-08 70.6 12.5 42 266-308 229-270 (467)
237 4g6h_A Rotenone-insensitive NA 97.7 2.4E-05 8.3E-10 78.9 4.5 37 26-62 40-76 (502)
238 1n4w_A CHOD, cholesterol oxida 97.7 2.7E-05 9.3E-10 78.8 4.9 38 27-64 4-41 (504)
239 3urh_A Dihydrolipoyl dehydroge 97.7 0.00035 1.2E-08 70.5 13.0 36 27-62 197-232 (491)
240 3q9t_A Choline dehydrogenase a 97.7 2.5E-05 8.5E-10 79.9 4.5 37 26-62 4-41 (577)
241 3cgb_A Pyridine nucleotide-dis 97.7 0.00018 6.2E-09 72.3 10.7 36 27-62 185-220 (480)
242 3hyw_A Sulfide-quinone reducta 97.6 3.2E-05 1.1E-09 76.7 4.5 35 28-62 2-38 (430)
243 4dna_A Probable glutathione re 97.6 0.00037 1.3E-08 69.7 12.3 41 266-307 224-266 (463)
244 4eqs_A Coenzyme A disulfide re 97.6 3.7E-05 1.3E-09 76.3 4.7 36 29-64 1-38 (437)
245 3s5w_A L-ornithine 5-monooxyge 97.6 0.00062 2.1E-08 68.1 13.5 43 266-308 329-376 (463)
246 3qvp_A Glucose oxidase; oxidor 97.6 3.4E-05 1.2E-09 78.8 4.2 36 26-61 17-53 (583)
247 3dk9_A Grase, GR, glutathione 97.5 0.00055 1.9E-08 68.8 12.2 36 27-62 186-221 (478)
248 3vrd_B FCCB subunit, flavocyto 97.5 5.5E-05 1.9E-09 74.3 4.7 42 266-307 215-256 (401)
249 1coy_A Cholesterol oxidase; ox 97.5 5.9E-05 2E-09 76.4 5.0 37 26-62 9-45 (507)
250 3uox_A Otemo; baeyer-villiger 97.5 0.0017 5.9E-08 66.1 15.8 36 27-62 184-219 (545)
251 3ics_A Coenzyme A-disulfide re 97.5 0.00052 1.8E-08 71.0 12.0 35 28-62 187-221 (588)
252 3itj_A Thioredoxin reductase 1 97.5 0.00049 1.7E-08 65.5 10.9 36 27-62 172-207 (338)
253 3fim_B ARYL-alcohol oxidase; A 97.5 4.2E-05 1.4E-09 78.0 3.4 36 28-63 2-38 (566)
254 3l8k_A Dihydrolipoyl dehydroge 97.5 0.00069 2.4E-08 67.8 12.0 36 27-62 171-206 (466)
255 2jbv_A Choline oxidase; alcoho 97.5 7.4E-05 2.5E-09 76.3 4.7 37 27-63 12-49 (546)
256 1gpe_A Protein (glucose oxidas 97.4 9.9E-05 3.4E-09 76.0 5.1 36 27-62 23-59 (587)
257 1trb_A Thioredoxin reductase; 97.4 0.0013 4.5E-08 62.0 12.5 35 27-61 144-178 (320)
258 4eqs_A Coenzyme A disulfide re 97.4 0.00067 2.3E-08 67.2 10.6 35 28-62 147-181 (437)
259 2q0l_A TRXR, thioredoxin reduc 97.4 0.0011 3.9E-08 62.2 11.7 35 27-61 142-176 (311)
260 3dgh_A TRXR-1, thioredoxin red 97.4 0.0013 4.5E-08 66.1 12.7 33 27-59 186-218 (483)
261 3kd9_A Coenzyme A disulfide re 97.4 0.00078 2.7E-08 67.1 10.6 35 28-62 148-182 (449)
262 4ap3_A Steroid monooxygenase; 97.3 0.0027 9.3E-08 64.7 14.2 36 27-62 190-225 (549)
263 2zbw_A Thioredoxin reductase; 97.3 0.0011 3.7E-08 63.1 10.7 34 28-61 152-185 (335)
264 3d1c_A Flavin-containing putat 97.3 0.0014 4.9E-08 63.1 11.3 42 266-307 227-270 (369)
265 3dgz_A Thioredoxin reductase 2 97.3 0.0019 6.3E-08 65.1 12.2 34 27-60 184-217 (488)
266 2q7v_A Thioredoxin reductase; 97.2 0.002 6.8E-08 61.0 11.4 34 28-61 152-185 (325)
267 3ab1_A Ferredoxin--NADP reduct 97.2 0.00098 3.3E-08 64.2 8.5 35 28-62 163-197 (360)
268 3f8d_A Thioredoxin reductase ( 97.1 0.0032 1.1E-07 59.3 11.4 35 27-61 153-187 (323)
269 3lzw_A Ferredoxin--NADP reduct 97.0 0.0027 9.2E-08 60.1 10.1 34 28-61 154-187 (332)
270 3cty_A Thioredoxin reductase; 97.0 0.005 1.7E-07 58.0 11.8 34 28-61 155-188 (319)
271 3r9u_A Thioredoxin reductase; 96.9 0.0037 1.3E-07 58.7 10.0 35 28-62 147-181 (315)
272 3fbs_A Oxidoreductase; structu 96.9 0.0039 1.3E-07 57.9 9.8 39 453-493 255-293 (297)
273 3qfa_A Thioredoxin reductase 1 96.9 0.0076 2.6E-07 61.0 12.6 32 28-59 210-241 (519)
274 3fwz_A Inner membrane protein 96.6 0.003 1E-07 51.4 6.1 36 26-61 5-40 (140)
275 3k30_A Histamine dehydrogenase 96.6 0.0042 1.4E-07 65.3 8.7 36 27-62 522-559 (690)
276 4g6h_A Rotenone-insensitive NA 96.6 0.0076 2.6E-07 60.7 10.1 42 266-307 285-330 (502)
277 3klj_A NAD(FAD)-dependent dehy 96.5 0.0018 6.1E-08 62.9 4.8 36 28-63 146-181 (385)
278 4gcm_A TRXR, thioredoxin reduc 96.5 0.0021 7.3E-08 60.4 5.2 35 28-62 145-179 (312)
279 2g1u_A Hypothetical protein TM 96.5 0.0031 1.1E-07 52.3 5.5 35 27-61 18-52 (155)
280 1lss_A TRK system potassium up 96.5 0.0032 1.1E-07 51.1 5.1 34 28-61 4-37 (140)
281 3ic5_A Putative saccharopine d 96.4 0.0031 1.1E-07 49.3 4.6 35 27-61 4-39 (118)
282 2x5o_A UDP-N-acetylmuramoylala 96.4 0.0023 7.8E-08 63.3 4.6 36 28-63 5-40 (439)
283 3llv_A Exopolyphosphatase-rela 96.3 0.0046 1.6E-07 50.3 5.2 34 28-61 6-39 (141)
284 1xhc_A NADH oxidase /nitrite r 96.2 0.0044 1.5E-07 59.7 5.3 35 29-63 144-178 (367)
285 3lk7_A UDP-N-acetylmuramoylala 96.1 0.0048 1.6E-07 61.2 5.0 34 28-61 9-42 (451)
286 4a5l_A Thioredoxin reductase; 96.1 0.0053 1.8E-07 57.6 5.1 34 27-60 151-184 (314)
287 3vtf_A UDP-glucose 6-dehydroge 96.1 0.0051 1.8E-07 59.9 5.0 50 6-61 5-54 (444)
288 2gag_A Heterotetrameric sarcos 96.0 0.019 6.5E-07 62.6 9.6 34 28-61 284-317 (965)
289 1id1_A Putative potassium chan 95.9 0.01 3.5E-07 49.0 5.4 33 28-60 3-35 (153)
290 3i83_A 2-dehydropantoate 2-red 95.9 0.0077 2.6E-07 56.7 5.1 34 28-61 2-35 (320)
291 3hn2_A 2-dehydropantoate 2-red 95.7 0.008 2.8E-07 56.4 4.5 34 28-61 2-35 (312)
292 2hmt_A YUAA protein; RCK, KTN, 95.7 0.01 3.5E-07 48.2 4.6 34 28-61 6-39 (144)
293 3ado_A Lambda-crystallin; L-gu 95.6 0.011 3.8E-07 55.0 5.1 34 28-61 6-39 (319)
294 3ef6_A Toluene 1,2-dioxygenase 95.6 0.013 4.5E-07 57.3 5.9 38 27-64 142-179 (410)
295 2ewd_A Lactate dehydrogenase,; 95.6 0.012 4E-07 55.4 5.2 37 25-61 1-38 (317)
296 1f0y_A HCDH, L-3-hydroxyacyl-C 95.6 0.014 4.7E-07 54.5 5.6 33 28-60 15-47 (302)
297 3c85_A Putative glutathione-re 95.6 0.012 4E-07 50.4 4.6 34 28-61 39-73 (183)
298 4e12_A Diketoreductase; oxidor 95.5 0.014 5E-07 53.7 5.6 34 28-61 4-37 (283)
299 3gg2_A Sugar dehydrogenase, UD 95.5 0.012 4.1E-07 58.1 5.2 33 29-61 3-35 (450)
300 3k6j_A Protein F01G10.3, confi 95.5 0.021 7E-07 56.1 6.6 36 27-62 53-88 (460)
301 1kyq_A Met8P, siroheme biosynt 95.5 0.011 3.8E-07 53.6 4.3 35 27-61 12-46 (274)
302 3l4b_C TRKA K+ channel protien 95.4 0.012 4.1E-07 51.9 4.4 33 29-61 1-33 (218)
303 1t2d_A LDH-P, L-lactate dehydr 95.4 0.019 6.3E-07 54.0 5.8 36 26-61 2-38 (322)
304 3g17_A Similar to 2-dehydropan 95.3 0.011 3.9E-07 54.8 4.0 34 28-61 2-35 (294)
305 3g79_A NDP-N-acetyl-D-galactos 95.3 0.013 4.6E-07 57.9 4.7 36 27-62 17-54 (478)
306 3doj_A AT3G25530, dehydrogenas 95.3 0.019 6.4E-07 53.8 5.5 36 26-61 19-54 (310)
307 2raf_A Putative dinucleotide-b 95.3 0.019 6.7E-07 50.2 5.3 36 27-62 18-53 (209)
308 3eag_A UDP-N-acetylmuramate:L- 95.3 0.017 5.7E-07 54.5 5.2 34 28-61 4-38 (326)
309 3qha_A Putative oxidoreductase 95.3 0.014 4.7E-07 54.3 4.4 38 25-62 12-49 (296)
310 2y0c_A BCEC, UDP-glucose dehyd 95.3 0.016 5.5E-07 57.6 5.2 35 27-61 7-41 (478)
311 3gwf_A Cyclohexanone monooxyge 95.3 0.015 5.2E-07 59.0 5.1 37 26-62 176-212 (540)
312 3k96_A Glycerol-3-phosphate de 95.2 0.017 5.7E-07 55.1 5.0 34 28-61 29-62 (356)
313 1ps9_A 2,4-dienoyl-COA reducta 95.2 0.1 3.5E-06 54.6 11.3 40 266-308 586-627 (671)
314 1fl2_A Alkyl hydroperoxide red 95.2 0.018 6E-07 53.9 5.0 35 28-62 144-178 (310)
315 4dio_A NAD(P) transhydrogenase 95.2 0.021 7.2E-07 54.8 5.5 35 27-61 189-223 (405)
316 2hjr_A Malate dehydrogenase; m 95.2 0.022 7.5E-07 53.6 5.6 35 27-61 13-48 (328)
317 1ks9_A KPA reductase;, 2-dehyd 95.2 0.02 6.9E-07 53.0 5.3 33 29-61 1-33 (291)
318 2xve_A Flavin-containing monoo 95.2 0.018 6.3E-07 57.3 5.3 36 27-62 196-231 (464)
319 1pzg_A LDH, lactate dehydrogen 95.1 0.021 7.1E-07 53.9 5.3 34 28-61 9-43 (331)
320 2dpo_A L-gulonate 3-dehydrogen 95.1 0.02 6.7E-07 53.6 5.1 34 28-61 6-39 (319)
321 1lld_A L-lactate dehydrogenase 95.1 0.021 7.1E-07 53.7 5.2 35 27-61 6-42 (319)
322 1z82_A Glycerol-3-phosphate de 95.1 0.021 7.1E-07 54.2 5.2 36 25-60 11-46 (335)
323 2ew2_A 2-dehydropantoate 2-red 95.1 0.02 6.8E-07 53.7 5.0 34 28-61 3-36 (316)
324 1vdc_A NTR, NADPH dependent th 95.0 0.021 7E-07 54.0 5.1 36 27-62 158-193 (333)
325 3lxd_A FAD-dependent pyridine 95.0 0.025 8.7E-07 55.4 5.9 36 28-63 152-187 (415)
326 3dfz_A SIRC, precorrin-2 dehyd 95.0 0.023 8E-07 49.8 4.9 34 27-60 30-63 (223)
327 3fg2_P Putative rubredoxin red 95.0 0.024 8.3E-07 55.3 5.6 36 28-63 142-177 (404)
328 2a87_A TRXR, TR, thioredoxin r 95.0 0.022 7.7E-07 53.9 5.2 36 27-62 154-189 (335)
329 3ego_A Probable 2-dehydropanto 95.0 0.022 7.5E-07 53.2 5.0 33 28-61 2-34 (307)
330 3ghy_A Ketopantoate reductase 94.9 0.025 8.5E-07 53.6 5.2 33 28-60 3-35 (335)
331 3p2y_A Alanine dehydrogenase/p 94.9 0.022 7.7E-07 54.1 4.7 35 27-61 183-217 (381)
332 1zej_A HBD-9, 3-hydroxyacyl-CO 94.8 0.027 9.2E-07 51.9 5.0 34 27-61 11-44 (293)
333 2gv8_A Monooxygenase; FMO, FAD 94.8 0.026 8.8E-07 55.9 5.1 37 27-63 211-248 (447)
334 3g0o_A 3-hydroxyisobutyrate de 94.7 0.03 1E-06 52.1 5.2 35 27-61 6-40 (303)
335 2a9f_A Putative malic enzyme ( 94.6 0.03 1E-06 53.1 4.8 35 26-60 186-221 (398)
336 1bg6_A N-(1-D-carboxylethyl)-L 94.6 0.032 1.1E-06 53.4 5.2 33 28-60 4-36 (359)
337 4dll_A 2-hydroxy-3-oxopropiona 94.6 0.031 1.1E-06 52.5 5.0 35 27-61 30-64 (320)
338 3dtt_A NADP oxidoreductase; st 94.6 0.037 1.3E-06 49.7 5.3 36 26-61 17-52 (245)
339 3hwr_A 2-dehydropantoate 2-red 94.6 0.032 1.1E-06 52.4 5.0 33 27-60 18-50 (318)
340 1zcj_A Peroxisomal bifunctiona 94.5 0.038 1.3E-06 54.8 5.6 34 28-61 37-70 (463)
341 4a7p_A UDP-glucose dehydrogena 94.5 0.039 1.3E-06 54.2 5.4 35 28-62 8-42 (446)
342 1mv8_A GMD, GDP-mannose 6-dehy 94.5 0.029 1E-06 55.3 4.6 33 29-61 1-33 (436)
343 3pid_A UDP-glucose 6-dehydroge 94.5 0.035 1.2E-06 54.0 5.0 34 27-61 35-68 (432)
344 1ur5_A Malate dehydrogenase; o 94.4 0.041 1.4E-06 51.3 5.3 34 28-61 2-36 (309)
345 1vpd_A Tartronate semialdehyde 94.4 0.032 1.1E-06 51.9 4.6 35 27-61 4-38 (299)
346 4ezb_A Uncharacterized conserv 94.4 0.039 1.3E-06 51.7 5.2 35 27-61 23-58 (317)
347 3pef_A 6-phosphogluconate dehy 94.4 0.039 1.3E-06 50.9 5.1 33 29-61 2-34 (287)
348 2vns_A Metalloreductase steap3 94.4 0.043 1.5E-06 48.2 5.1 35 27-61 27-61 (215)
349 2q3e_A UDP-glucose 6-dehydroge 94.4 0.031 1E-06 55.6 4.6 37 25-61 2-40 (467)
350 2v6b_A L-LDH, L-lactate dehydr 94.4 0.039 1.3E-06 51.3 5.0 33 29-61 1-35 (304)
351 2x8g_A Thioredoxin glutathione 94.3 0.038 1.3E-06 57.0 5.3 33 28-60 286-318 (598)
352 2vdc_G Glutamate synthase [NAD 94.3 0.052 1.8E-06 53.7 6.0 36 26-61 262-298 (456)
353 1vl6_A Malate oxidoreductase; 94.3 0.041 1.4E-06 52.2 4.8 34 27-60 191-225 (388)
354 2h78_A Hibadh, 3-hydroxyisobut 94.2 0.042 1.4E-06 51.2 4.8 34 28-61 3-36 (302)
355 1hyu_A AHPF, alkyl hydroperoxi 94.1 0.036 1.2E-06 56.1 4.5 35 28-62 355-389 (521)
356 4e21_A 6-phosphogluconate dehy 94.1 0.051 1.7E-06 51.8 5.2 35 27-61 21-55 (358)
357 3mog_A Probable 3-hydroxybutyr 94.0 0.05 1.7E-06 54.1 5.3 34 28-61 5-38 (483)
358 3cky_A 2-hydroxymethyl glutara 94.0 0.045 1.5E-06 50.9 4.7 36 26-61 2-37 (301)
359 3pdu_A 3-hydroxyisobutyrate de 94.0 0.037 1.3E-06 51.1 4.0 33 29-61 2-34 (287)
360 1guz_A Malate dehydrogenase; o 94.0 0.056 1.9E-06 50.4 5.3 33 29-61 1-35 (310)
361 1txg_A Glycerol-3-phosphate de 94.0 0.041 1.4E-06 52.1 4.4 31 29-59 1-31 (335)
362 3l6d_A Putative oxidoreductase 94.0 0.062 2.1E-06 50.1 5.6 35 27-61 8-42 (306)
363 4gbj_A 6-phosphogluconate dehy 94.0 0.042 1.5E-06 50.9 4.3 36 26-61 3-38 (297)
364 3oj0_A Glutr, glutamyl-tRNA re 93.9 0.027 9.1E-07 45.9 2.6 34 28-61 21-54 (144)
365 1dlj_A UDP-glucose dehydrogena 93.9 0.042 1.4E-06 53.4 4.4 32 29-61 1-32 (402)
366 1y6j_A L-lactate dehydrogenase 93.9 0.057 2E-06 50.5 5.1 35 27-61 6-42 (318)
367 3dfu_A Uncharacterized protein 93.9 0.022 7.4E-07 50.3 2.0 34 27-60 5-38 (232)
368 1x13_A NAD(P) transhydrogenase 93.9 0.059 2E-06 52.2 5.3 35 27-61 171-205 (401)
369 2qyt_A 2-dehydropantoate 2-red 93.8 0.036 1.2E-06 52.0 3.6 32 28-59 8-45 (317)
370 3tl2_A Malate dehydrogenase; c 93.7 0.076 2.6E-06 49.4 5.6 33 28-60 8-41 (315)
371 4huj_A Uncharacterized protein 93.7 0.039 1.3E-06 48.7 3.4 33 28-60 23-56 (220)
372 3ius_A Uncharacterized conserv 93.7 0.058 2E-06 49.6 4.8 36 26-61 3-38 (286)
373 1evy_A Glycerol-3-phosphate de 93.7 0.035 1.2E-06 53.3 3.3 31 30-60 17-47 (366)
374 4g65_A TRK system potassium up 93.6 0.032 1.1E-06 55.2 3.1 34 28-61 3-36 (461)
375 3qsg_A NAD-binding phosphogluc 93.6 0.053 1.8E-06 50.7 4.4 34 27-60 23-57 (312)
376 2pv7_A T-protein [includes: ch 93.6 0.077 2.6E-06 49.2 5.5 35 27-61 20-55 (298)
377 3pqe_A L-LDH, L-lactate dehydr 93.6 0.067 2.3E-06 50.1 5.0 34 27-60 4-39 (326)
378 2qrj_A Saccharopine dehydrogen 93.6 0.065 2.2E-06 51.1 4.9 40 27-66 213-257 (394)
379 1jay_A Coenzyme F420H2:NADP+ o 93.6 0.071 2.4E-06 46.6 4.9 32 29-60 1-33 (212)
380 1l7d_A Nicotinamide nucleotide 93.6 0.075 2.6E-06 51.3 5.5 35 27-61 171-205 (384)
381 3gvi_A Malate dehydrogenase; N 93.6 0.081 2.8E-06 49.5 5.5 34 28-61 7-41 (324)
382 3o0h_A Glutathione reductase; 93.5 0.08 2.7E-06 53.0 5.8 37 27-63 190-226 (484)
383 3l9w_A Glutathione-regulated p 93.5 0.07 2.4E-06 51.9 5.2 35 27-61 3-37 (413)
384 2uyy_A N-PAC protein; long-cha 93.5 0.078 2.7E-06 49.7 5.4 34 28-61 30-63 (316)
385 2o3j_A UDP-glucose 6-dehydroge 93.5 0.056 1.9E-06 53.8 4.5 33 28-60 9-43 (481)
386 3c7a_A Octopine dehydrogenase; 93.4 0.042 1.4E-06 53.6 3.4 30 29-58 3-33 (404)
387 3c24_A Putative oxidoreductase 93.4 0.092 3.1E-06 48.4 5.5 33 28-60 11-44 (286)
388 4ffl_A PYLC; amino acid, biosy 93.3 0.092 3.1E-06 50.3 5.6 35 28-62 1-35 (363)
389 1pjc_A Protein (L-alanine dehy 93.3 0.089 3.1E-06 50.3 5.4 34 28-61 167-200 (361)
390 3ldh_A Lactate dehydrogenase; 93.3 0.11 3.8E-06 48.5 5.9 35 27-61 20-56 (330)
391 1a5z_A L-lactate dehydrogenase 93.3 0.067 2.3E-06 50.1 4.4 33 29-61 1-35 (319)
392 2wtb_A MFP2, fatty acid multif 93.2 0.085 2.9E-06 55.3 5.6 34 28-61 312-345 (725)
393 3gt0_A Pyrroline-5-carboxylate 93.2 0.098 3.3E-06 47.0 5.3 34 28-61 2-39 (247)
394 1yj8_A Glycerol-3-phosphate de 93.1 0.058 2E-06 52.0 3.9 35 28-62 21-62 (375)
395 1hyh_A L-hicdh, L-2-hydroxyiso 93.1 0.076 2.6E-06 49.5 4.5 33 29-61 2-36 (309)
396 1nyt_A Shikimate 5-dehydrogena 93.1 0.1 3.5E-06 47.6 5.3 33 28-60 119-151 (271)
397 2rcy_A Pyrroline carboxylate r 93.1 0.086 2.9E-06 47.8 4.8 35 28-62 4-42 (262)
398 4aj2_A L-lactate dehydrogenase 93.0 0.11 3.8E-06 48.6 5.5 36 25-60 16-53 (331)
399 3vku_A L-LDH, L-lactate dehydr 93.0 0.092 3.2E-06 49.1 4.9 36 25-60 6-43 (326)
400 2eez_A Alanine dehydrogenase; 93.0 0.1 3.6E-06 50.0 5.4 34 28-61 166-199 (369)
401 2i6t_A Ubiquitin-conjugating e 93.0 0.085 2.9E-06 48.9 4.6 35 27-61 13-49 (303)
402 1yqg_A Pyrroline-5-carboxylate 93.0 0.082 2.8E-06 48.0 4.5 32 29-60 1-33 (263)
403 4gwg_A 6-phosphogluconate dehy 93.0 0.092 3.2E-06 52.0 5.1 35 27-61 3-37 (484)
404 1oju_A MDH, malate dehydrogena 92.9 0.083 2.8E-06 48.7 4.4 33 29-61 1-35 (294)
405 2f1k_A Prephenate dehydrogenas 92.9 0.099 3.4E-06 47.9 5.0 32 29-60 1-32 (279)
406 3ggo_A Prephenate dehydrogenas 92.9 0.11 3.7E-06 48.6 5.2 34 28-61 33-68 (314)
407 3dhn_A NAD-dependent epimerase 92.9 0.089 3E-06 46.4 4.5 36 26-61 2-38 (227)
408 1ez4_A Lactate dehydrogenase; 92.9 0.087 3E-06 49.2 4.5 36 25-60 2-39 (318)
409 1pjq_A CYSG, siroheme synthase 92.9 0.091 3.1E-06 51.9 4.9 33 28-60 12-44 (457)
410 2p4q_A 6-phosphogluconate dehy 92.8 0.11 3.6E-06 51.9 5.4 36 26-61 8-43 (497)
411 3p7m_A Malate dehydrogenase; p 92.8 0.12 4.2E-06 48.2 5.5 34 28-61 5-39 (321)
412 1cjc_A Protein (adrenodoxin re 92.8 0.1 3.4E-06 51.8 5.1 35 27-61 144-199 (460)
413 2izz_A Pyrroline-5-carboxylate 92.7 0.1 3.6E-06 48.9 5.0 35 27-61 21-59 (322)
414 3phh_A Shikimate dehydrogenase 92.7 0.13 4.6E-06 46.4 5.4 34 28-61 118-151 (269)
415 3e8x_A Putative NAD-dependent 92.7 0.12 4.3E-06 45.8 5.2 35 27-61 20-55 (236)
416 2gf2_A Hibadh, 3-hydroxyisobut 92.7 0.099 3.4E-06 48.4 4.6 33 29-61 1-33 (296)
417 3nep_X Malate dehydrogenase; h 92.6 0.1 3.5E-06 48.5 4.6 33 29-61 1-35 (314)
418 2aef_A Calcium-gated potassium 92.4 0.06 2.1E-06 47.9 2.7 36 26-62 7-42 (234)
419 2vhw_A Alanine dehydrogenase; 92.4 0.14 4.8E-06 49.2 5.4 35 27-61 167-201 (377)
420 3ojo_A CAP5O; rossmann fold, c 92.4 0.1 3.5E-06 50.8 4.4 34 28-61 11-44 (431)
421 3ktd_A Prephenate dehydrogenas 92.4 0.14 4.8E-06 48.2 5.3 35 27-61 7-41 (341)
422 1p77_A Shikimate 5-dehydrogena 92.4 0.11 3.7E-06 47.5 4.3 34 27-60 118-151 (272)
423 2g5c_A Prephenate dehydrogenas 92.3 0.14 4.8E-06 46.9 5.2 32 29-60 2-35 (281)
424 1x0v_A GPD-C, GPDH-C, glycerol 92.3 0.069 2.4E-06 50.9 3.2 34 29-62 9-49 (354)
425 1o94_A Tmadh, trimethylamine d 92.3 0.12 4.2E-06 54.4 5.3 35 27-61 527-563 (729)
426 2ahr_A Putative pyrroline carb 92.3 0.13 4.3E-06 46.6 4.7 33 28-60 3-35 (259)
427 2egg_A AROE, shikimate 5-dehyd 92.3 0.14 4.9E-06 47.3 5.1 34 27-60 140-174 (297)
428 1jw9_B Molybdopterin biosynthe 92.2 0.12 4.1E-06 46.4 4.5 33 28-60 31-64 (249)
429 2pgd_A 6-phosphogluconate dehy 92.2 0.12 4.2E-06 51.4 4.9 33 29-61 3-35 (482)
430 1yb4_A Tartronic semialdehyde 92.2 0.092 3.2E-06 48.6 3.8 33 28-61 3-35 (295)
431 1wdk_A Fatty oxidation complex 92.2 0.12 4E-06 54.2 5.0 34 28-61 314-347 (715)
432 2zyd_A 6-phosphogluconate dehy 92.2 0.11 3.9E-06 51.5 4.6 34 28-61 15-48 (480)
433 4hv4_A UDP-N-acetylmuramate--L 92.2 0.096 3.3E-06 52.4 4.1 35 27-61 21-56 (494)
434 4a9w_A Monooxygenase; baeyer-v 92.1 0.12 4.2E-06 48.9 4.7 33 27-60 162-194 (357)
435 2cvz_A Dehydrogenase, 3-hydrox 92.1 0.12 3.9E-06 47.7 4.3 32 29-61 2-33 (289)
436 1ldn_A L-lactate dehydrogenase 92.1 0.14 4.9E-06 47.8 4.9 35 27-61 5-41 (316)
437 1i36_A Conserved hypothetical 92.1 0.13 4.4E-06 46.7 4.5 31 29-59 1-31 (264)
438 2rir_A Dipicolinate synthase, 92.0 0.17 5.8E-06 46.9 5.3 35 27-61 156-190 (300)
439 3ew7_A LMO0794 protein; Q8Y8U8 92.0 0.18 6.1E-06 44.1 5.2 33 29-61 1-34 (221)
440 1pgj_A 6PGDH, 6-PGDH, 6-phosph 92.0 0.13 4.4E-06 51.2 4.7 33 29-61 2-34 (478)
441 3d4o_A Dipicolinate synthase s 91.8 0.19 6.4E-06 46.5 5.4 35 27-61 154-188 (293)
442 3gpi_A NAD-dependent epimerase 91.8 0.2 6.9E-06 45.9 5.6 34 28-61 3-36 (286)
443 1edz_A 5,10-methylenetetrahydr 91.8 0.15 5.2E-06 47.2 4.6 35 26-60 175-210 (320)
444 3tri_A Pyrroline-5-carboxylate 91.7 0.2 6.8E-06 45.9 5.4 34 28-61 3-39 (280)
445 4b4o_A Epimerase family protei 91.7 0.2 6.9E-06 46.2 5.6 33 29-61 1-34 (298)
446 3d1l_A Putative NADP oxidoredu 91.7 0.13 4.3E-06 46.8 4.0 34 28-61 10-44 (266)
447 3h2s_A Putative NADH-flavin re 91.7 0.19 6.6E-06 44.0 5.1 33 29-61 1-34 (224)
448 1hdo_A Biliverdin IX beta redu 91.5 0.24 8.4E-06 42.6 5.5 33 29-61 4-37 (206)
449 1w4x_A Phenylacetone monooxyge 91.5 0.15 5E-06 51.8 4.6 35 27-61 185-219 (542)
450 1n7h_A GDP-D-mannose-4,6-dehyd 91.4 0.2 6.9E-06 48.2 5.4 36 27-62 27-63 (381)
451 2hk9_A Shikimate dehydrogenase 91.4 0.16 5.5E-06 46.4 4.4 34 28-61 129-162 (275)
452 3d0o_A L-LDH 1, L-lactate dehy 91.4 0.18 6.1E-06 47.1 4.7 33 28-60 6-40 (317)
453 1np3_A Ketol-acid reductoisome 91.3 0.21 7.1E-06 47.2 5.2 34 28-61 16-49 (338)
454 1p3d_A UDP-N-acetylmuramate--a 91.2 0.17 5.8E-06 50.4 4.7 36 26-61 16-52 (475)
455 3fi9_A Malate dehydrogenase; s 91.1 0.22 7.7E-06 46.8 5.1 33 28-60 8-43 (343)
456 3r6d_A NAD-dependent epimerase 91.0 0.31 1.1E-05 42.6 5.8 35 27-61 4-40 (221)
457 1lqt_A FPRA; NADP+ derivative, 91.0 0.2 6.9E-06 49.5 4.9 35 27-61 146-201 (456)
458 3zwc_A Peroxisomal bifunctiona 91.0 0.29 9.9E-06 51.2 6.2 35 27-61 315-349 (742)
459 1gte_A Dihydropyrimidine dehyd 90.9 0.19 6.4E-06 55.3 5.0 34 28-61 332-366 (1025)
460 2x0j_A Malate dehydrogenase; o 90.9 0.19 6.6E-06 46.1 4.3 33 29-61 1-35 (294)
461 1y7t_A Malate dehydrogenase; N 90.9 0.17 5.8E-06 47.6 4.1 35 26-60 2-44 (327)
462 1mld_A Malate dehydrogenase; o 90.8 0.21 7.1E-06 46.6 4.6 33 29-61 1-36 (314)
463 2zqz_A L-LDH, L-lactate dehydr 90.8 0.24 8.1E-06 46.4 4.9 35 26-60 7-43 (326)
464 3u62_A Shikimate dehydrogenase 90.7 0.27 9.3E-06 44.1 5.1 32 30-61 110-142 (253)
465 3ond_A Adenosylhomocysteinase; 90.7 0.26 8.8E-06 48.4 5.3 35 27-61 264-298 (488)
466 3don_A Shikimate dehydrogenase 90.7 0.2 6.7E-06 45.7 4.2 35 27-61 116-151 (277)
467 2yjz_A Metalloreductase steap4 90.0 0.048 1.6E-06 47.3 0.0 35 27-61 18-52 (201)
468 2iz1_A 6-phosphogluconate dehy 90.4 0.23 7.9E-06 49.3 4.8 34 28-61 5-38 (474)
469 1nvt_A Shikimate 5'-dehydrogen 90.4 0.23 8E-06 45.6 4.5 32 28-60 128-159 (287)
470 3pwz_A Shikimate dehydrogenase 90.4 0.31 1.1E-05 44.2 5.3 35 27-61 119-154 (272)
471 1leh_A Leucine dehydrogenase; 90.3 0.31 1.1E-05 46.3 5.3 34 27-60 172-205 (364)
472 3tnl_A Shikimate dehydrogenase 90.3 0.33 1.1E-05 45.1 5.3 34 27-60 153-187 (315)
473 2dbq_A Glyoxylate reductase; D 90.2 0.34 1.2E-05 45.6 5.5 36 27-62 149-184 (334)
474 3fbt_A Chorismate mutase and s 90.2 0.29 1E-05 44.6 4.9 35 27-61 121-156 (282)
475 3o8q_A Shikimate 5-dehydrogena 90.2 0.33 1.1E-05 44.3 5.2 35 27-61 125-160 (281)
476 1smk_A Malate dehydrogenase, g 90.2 0.2 6.9E-06 47.0 3.9 35 27-61 7-44 (326)
477 3rui_A Ubiquitin-like modifier 90.2 0.31 1.1E-05 45.6 5.1 34 27-60 33-67 (340)
478 2f00_A UDP-N-acetylmuramate--L 90.1 0.23 7.9E-06 49.6 4.5 35 27-61 18-53 (491)
479 2d5c_A AROE, shikimate 5-dehyd 90.1 0.31 1.1E-05 44.1 5.1 32 30-61 118-149 (263)
480 2b69_A UDP-glucuronate decarbo 90.1 0.34 1.2E-05 45.7 5.5 34 27-60 26-60 (343)
481 3h8v_A Ubiquitin-like modifier 90.0 0.23 7.7E-06 45.5 4.0 34 27-60 35-69 (292)
482 3jyo_A Quinate/shikimate dehyd 90.0 0.35 1.2E-05 44.2 5.3 35 27-61 126-161 (283)
483 4id9_A Short-chain dehydrogena 90.0 0.29 1E-05 46.2 5.0 37 26-62 17-54 (347)
484 1a4i_A Methylenetetrahydrofola 90.0 0.35 1.2E-05 44.1 5.1 34 27-60 164-198 (301)
485 2x4g_A Nucleoside-diphosphate- 89.9 0.36 1.2E-05 45.4 5.5 35 27-61 12-47 (342)
486 3vps_A TUNA, NAD-dependent epi 89.9 0.34 1.2E-05 45.1 5.3 36 27-62 6-42 (321)
487 3b1f_A Putative prephenate deh 89.8 0.29 1E-05 45.0 4.7 33 28-60 6-40 (290)
488 2dvm_A Malic enzyme, 439AA lon 89.8 0.33 1.1E-05 47.1 5.2 32 27-58 185-219 (439)
489 3orq_A N5-carboxyaminoimidazol 89.8 0.53 1.8E-05 45.1 6.6 37 26-62 10-46 (377)
490 3obb_A Probable 3-hydroxyisobu 89.7 0.31 1.1E-05 45.0 4.8 34 28-61 3-36 (300)
491 1zud_1 Adenylyltransferase THI 89.7 0.32 1.1E-05 43.6 4.7 33 28-60 28-61 (251)
492 2gcg_A Glyoxylate reductase/hy 89.7 0.35 1.2E-05 45.4 5.2 35 27-61 154-188 (330)
493 3gvp_A Adenosylhomocysteinase 89.5 0.33 1.1E-05 46.8 4.8 35 27-61 219-253 (435)
494 1qyc_A Phenylcoumaran benzylic 89.4 0.35 1.2E-05 44.8 5.0 34 28-61 4-38 (308)
495 3ce6_A Adenosylhomocysteinase; 89.4 0.41 1.4E-05 47.4 5.6 36 26-61 272-307 (494)
496 3ngx_A Bifunctional protein fo 89.3 0.39 1.3E-05 43.2 4.8 33 27-59 149-182 (276)
497 3qvo_A NMRA family protein; st 89.3 0.27 9.1E-06 43.7 3.8 35 27-61 22-58 (236)
498 3enk_A UDP-glucose 4-epimerase 89.2 0.47 1.6E-05 44.6 5.8 38 25-62 2-40 (341)
499 1gpj_A Glutamyl-tRNA reductase 89.2 0.38 1.3E-05 46.7 5.1 35 27-61 166-201 (404)
500 2ydy_A Methionine adenosyltran 89.2 0.37 1.2E-05 44.8 4.9 34 28-61 2-36 (315)
No 1
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=100.00 E-value=5.8e-46 Score=382.27 Aligned_cols=431 Identities=23% Similarity=0.307 Sum_probs=298.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCC-CcccccccceecCCCCCCchHHHHHHcCCCe
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~-g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (520)
.+++||+|||||++||+||+.|+++|++|+|||+++++||++++...+ |+.+|.|++++++. +..+.++++++|++.
T Consensus 2 ~~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~--~~~~~~l~~~lgl~~ 79 (520)
T 1s3e_A 2 SNKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT--QNRILRLAKELGLET 79 (520)
T ss_dssp -CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTTTSCEESSCCEECTT--CHHHHHHHHHTTCCE
T ss_pred CCCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccCCCcccccCceEecCC--cHHHHHHHHHcCCcc
Confidence 356899999999999999999999999999999999999999998885 89999999998743 567889999999986
Q ss_pred eeecCCCc-cccccCccceeeecCC-CCccCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhcCccccccc
Q 010001 105 YRTSGDNS-VLYDHDLESYALFDMD-GNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRFFE 182 (520)
Q Consensus 105 ~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (520)
........ +.+.++. ... +... ........... +.+++....++........... .+ .
T Consensus 80 ~~~~~~~~~~~~~~g~-~~~-~~~~~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---------~~--~--- 139 (520)
T 1s3e_A 80 YKVNEVERLIHHVKGK-SYP-FRGPFPPVWNPITYLD----HNNFWRTMDDMGREIPSDAPWK---------AP--L--- 139 (520)
T ss_dssp EECCCSSEEEEEETTE-EEE-ECSSSCCCCSHHHHHH----HHHHHHHHHHHHTTSCTTCGGG---------ST--T---
T ss_pred eecccCCceEEEECCE-EEE-ecCCCCCCCCHHHHHH----HHHHHHHHHHHHhhcCcCCCcc---------cc--c---
Confidence 54322211 1111111 111 1110 00011111111 1222222222211110000000 00 0
Q ss_pred cccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-hhhhcCCcccccccccCcccc------------ccCC
Q 010001 183 HVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEEL------------LPGG 249 (520)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------~~~g 249 (520)
.......+ +.++++ +...+ +..+.++.++ ...++.++..+++..+..... -.+.
T Consensus 140 --~~~~~~~s----~~~~l~------~~~~~-~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~ 206 (520)
T 1s3e_A 140 --AEEWDNMT----MKELLD------KLCWT-ESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQ 206 (520)
T ss_dssp --HHHHHTSB----HHHHHH------HHCSS-HHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTT
T ss_pred --hhhhhccC----HHHHHH------hhCCC-HHHHHHHHHHHhhhcCCChHHhHHHHHHHHHhhcCchhhhcccCCCcc
Confidence 00000111 122221 22222 2233344433 456677777766554321110 0122
Q ss_pred ccccccChHHHHHHHhc--cCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCchHHHH
Q 010001 250 HGLMVRGYLPVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEA 327 (520)
Q Consensus 250 ~~~~~~G~~~l~~~L~~--gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~l~~~~~~ 327 (520)
...+.+|++.++++|.+ |++|++|++|++|+.+++++.|.+.+|+++.||+||+|+|+..+.++ .+.|+||....+
T Consensus 207 ~~~~~gG~~~l~~~l~~~lg~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~l--~~~p~lp~~~~~ 284 (520)
T 1s3e_A 207 ERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMKI--HFNPPLPMMRNQ 284 (520)
T ss_dssp SEEETTCTHHHHHHHHHHHGGGEESSCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGGGGGS--EEESCCCHHHHH
T ss_pred eEEEeCCHHHHHHHHHHHcCCcEEcCCeeEEEEECCCeEEEEECCCeEEEeCEEEECCCHHHHcce--eeCCCCCHHHHH
Confidence 45788999999999986 88999999999999998889999999999999999999999998753 467889999899
Q ss_pred HHhhcCCcceeEEEEEeCCCcccCCccceeec--CC-CCceeEeeeccCCCCceEEEEEechhhhHHHhcCCHHHHHHHH
Q 010001 328 AIDDLGVGIENKIIMHFDKVFWPNVEFLGVVS--DT-SYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFA 404 (520)
Q Consensus 328 ~~~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~ 404 (520)
.+.++++++..++++.|++++|++..+.|.+. .+ ......+.....+++..+++.++.+..+..|..++++++++.+
T Consensus 285 ~i~~~~~~~~~kv~l~~~~~~w~~~~~~g~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~v 364 (520)
T 1s3e_A 285 MITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKL 364 (520)
T ss_dssp HTTSCCBCCEEEEEEECSSCGGGGGTEEEEEEECSTTCSCSEEEECCCTTSCSCEEEEEEETHHHHHHTTSCHHHHHHHH
T ss_pred HHHhCCCcceEEEEEEeCCCcccCCCCCceeeccCCCCceEEEeeCCCCCCCCCEEEEEccchhhhhhhcCCHHHHHHHH
Confidence 99999999999999999999998766656532 22 2222233332223335788888888778889999999999999
Q ss_pred HHHHHHHCCC--CCCCcEEEeccCCCCCCCCcccc-CCCCCCChhHHHHhcCCCCcEEEeeccccCcCCccchHHHHHHH
Q 010001 405 FTQLKKILPD--ASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGL 481 (520)
Q Consensus 405 ~~~L~~~~~~--~~~~~~~~~~~w~~~~~~~g~~~-~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egAi~SG~ 481 (520)
+++|++++|. ...|.++.+++|..++++.|+|. +..++......+.+++|++||||||++++..++|+++||+.||.
T Consensus 365 l~~L~~~~~~~~~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~l~~p~~~L~fAG~~t~~~~~g~v~GAi~SG~ 444 (520)
T 1s3e_A 365 CELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGE 444 (520)
T ss_dssp HHHHHHHHTCGGGGCCSEEEEEEGGGCTTTCSSSCBCCCTTHHHHHGGGTTCCBTTEEECSGGGCSSSTTSHHHHHHHHH
T ss_pred HHHHHHHhCccccCCccEEEEEeeCCCCCCCCCCccccCCCccccchHHHhCCCCCEEEeehhhcCcCcEEhHHHHHHHH
Confidence 9999999975 35788999999999999999887 55677655666778999999999999998767789999999999
Q ss_pred HHHHHHHHHHHH
Q 010001 482 MAAEDCRMRVLE 493 (520)
Q Consensus 482 ~aA~~i~~~l~~ 493 (520)
+||++|++.+..
T Consensus 445 ~aA~~i~~~l~~ 456 (520)
T 1s3e_A 445 RAAREILHAMGK 456 (520)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHHhc
Confidence 999999887643
No 2
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=100.00 E-value=5.5e-44 Score=361.92 Aligned_cols=427 Identities=21% Similarity=0.280 Sum_probs=290.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcCCCeee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~ 106 (520)
.++||+|||||++||+||++|+++|++|+|||+++++||++++...+|+.+|.|++++.. ....+.++++++|++...
T Consensus 4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~--~~~~~~~~~~~~g~~~~~ 81 (453)
T 2yg5_A 4 LQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSP--DQTALISLLDELGLKTFE 81 (453)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEETTEEEECSCCCBCT--TCHHHHHHHHHTTCCEEE
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccccCCceeccCCeEecC--ccHHHHHHHHHcCCcccc
Confidence 357999999999999999999999999999999999999999988789999999998763 245688999999998654
Q ss_pred ecCCCc-cccccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhhcCCC-CCcHHHHHHHHHhcCccccccccc
Q 010001 107 TSGDNS-VLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDE-DMSIQRAISIVFDRRPELRFFEHV 184 (520)
Q Consensus 107 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 184 (520)
...... +++..+..... +......+++.....+...+..+............. .....
T Consensus 82 ~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 141 (453)
T 2yg5_A 82 RYREGESVYISSAGERTR-YTGDSFPTNETTKKEMDRLIDEMDDLAAQIGAEEPWAHPLAR------------------- 141 (453)
T ss_dssp CCCCSEEEEECTTSCEEE-ECSSSCSCCHHHHHHHHHHHHHHHHHHHHHCSSCGGGSTTHH-------------------
T ss_pred cccCCCEEEEeCCCceee-ccCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCCCcchh-------------------
Confidence 332222 22221111111 111111122221111111111111111111000000 00000
Q ss_pred cCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-hhhhcCCcc-cccccccCcccccc-----------CCcc
Q 010001 185 SSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRM-EGWFAADAE-TISLKSWDKEELLP-----------GGHG 251 (520)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~-----------~g~~ 251 (520)
.+...+ +.++++ +...+ +..+.++.++ ...++.++. .+++..+....... ....
T Consensus 142 --~~~~~s----~~~~l~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~ 208 (453)
T 2yg5_A 142 --DLDTVS----FKQWLI------NQSDD-AEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFSHLVDEDFILDK 208 (453)
T ss_dssp --HHHSSB----HHHHHH------HHCSC-HHHHHHHHHHHCCCCCCSCTTSSBHHHHHHHHHHTTCHHHHHCHHHHTCE
T ss_pred --hhhhcc----HHHHHH------hhcCC-HHHHHHHHHHHHhhcccCCcccccHHHHHHHhccCCcHhhhccCCCcceE
Confidence 000111 122221 22222 2233344443 345565665 66554432111111 1245
Q ss_pred ccccChHHHHHHHhc--cCCeecCceeEEEEEeCCe-EEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCchHHHHH
Q 010001 252 LMVRGYLPVINTLAK--GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAA 328 (520)
Q Consensus 252 ~~~~G~~~l~~~L~~--gv~i~~~~~V~~I~~~~~~-v~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~l~~~~~~~ 328 (520)
.+.+|++.++++|++ |++|++|++|++|..++++ +.|++ +|+++.||+||+|+|+..+.++ .+.|.||....+.
T Consensus 209 ~~~gG~~~l~~~l~~~lg~~i~~~~~V~~i~~~~~~~v~v~~-~~~~~~ad~VI~a~p~~~~~~l--~~~p~lp~~~~~~ 285 (453)
T 2yg5_A 209 RVIGGMQQVSIRMAEALGDDVFLNAPVRTVKWNESGATVLAD-GDIRVEASRVILAVPPNLYSRI--SYDPPLPRRQHQM 285 (453)
T ss_dssp EETTCTHHHHHHHHHHHGGGEECSCCEEEEEEETTEEEEEET-TTEEEEEEEEEECSCGGGGGGS--EEESCCCHHHHHH
T ss_pred EEcCChHHHHHHHHHhcCCcEEcCCceEEEEEeCCceEEEEE-CCeEEEcCEEEEcCCHHHHhcC--EeCCCCCHHHHHH
Confidence 788999999999975 6799999999999999988 88876 6778999999999999988753 3678899988888
Q ss_pred HhhcCCcceeEEEEEeCCCcccCCccceeecC-CCCceeEeeeccCCCCceEEEEEechhhhHHHhcCCHHHHHHHHHHH
Q 010001 329 IDDLGVGIENKIIMHFDKVFWPNVEFLGVVSD-TSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ 407 (520)
Q Consensus 329 ~~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~ 407 (520)
++++++.+..++++.|++++|++..+.|.+.. +......+.....+.+..+++.++.+.....|..++++++++.++++
T Consensus 286 i~~~~~~~~~kv~l~~~~~~w~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 365 (453)
T 2yg5_A 286 HQHQSLGLVIKVHAVYETPFWREDGLSGTGFGASEVVQEVYDNTNHEDDRGTLVAFVSDEKADAMFELSAEERKATILAS 365 (453)
T ss_dssp GGGEEECCEEEEEEEESSCGGGGGTEEEEEECTTSSSCEEEECCCTTCSSEEEEEEEEHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HhcCCCcceEEEEEEECCCCCCCCCCCceeecCCCCeEEEEeCCCCCCCCCEEEEEeccHHHHHHhcCCHHHHHHHHHHH
Confidence 99999989999999999999987665565443 22223333333222335788888888788889999999999999999
Q ss_pred HHHHCCC-CCCCcEEEeccCCCCCCCCcccc-CCCCCCChhHHHHhcCCCCcEEEeeccccCcCCccchHHHHHHHHHHH
Q 010001 408 LKKILPD-ASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAE 485 (520)
Q Consensus 408 L~~~~~~-~~~~~~~~~~~w~~~~~~~g~~~-~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egAi~SG~~aA~ 485 (520)
|+++++. ..+|..+.+++|..++++.|+|. +..++......+.+++|++|||+||++++..++|+++||+.||.+||+
T Consensus 366 L~~~~~~~~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~ 445 (453)
T 2yg5_A 366 LARYLGPKAEEPVVYYESDWGSEEWTRGCYAASFDLGGLHRYGADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAA 445 (453)
T ss_dssp HHHHHCGGGGCCSEEEECCTTTCTTTCSSSCEEECTTHHHHHGGGTTCCBTTEEECCGGGCSTTTTSHHHHHHHHHHHHH
T ss_pred HHHHhCccCCCccEEEEeecCCCCCCCCCCcCcCCCCccccchHHHhCCcCceEEeecccccccccchHHHHHHHHHHHH
Confidence 9999974 45788899999999999999875 345665445556789999999999999987677899999999999999
Q ss_pred HHHHHH
Q 010001 486 DCRMRV 491 (520)
Q Consensus 486 ~i~~~l 491 (520)
+|++.+
T Consensus 446 ~i~~~l 451 (453)
T 2yg5_A 446 DIIARS 451 (453)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 998754
No 3
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=100.00 E-value=6.7e-42 Score=359.29 Aligned_cols=451 Identities=32% Similarity=0.529 Sum_probs=308.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcCCCee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY 105 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~ 105 (520)
...+||+|||||++||+||+.|+++|++|+|+|+++++||++.+.+..|+.+|.|++++++. ..+.+..+.++++++..
T Consensus 105 ~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~l~~~l~~~~~ 183 (662)
T 2z3y_A 105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGL-GGNPMAVVSKQVNMELA 183 (662)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEETTEEEESSCCEECCS-BTCHHHHHHHHHTCCEE
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccccCchhhcCcEEEeCC-CCchHHHHHHHhCcchh
Confidence 45689999999999999999999999999999999999999999888899999999998765 34567788999999765
Q ss_pred eecCCCccccccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhhcC------CCCCcHHHHHHHHH---hcC-
Q 010001 106 RTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEH------DEDMSIQRAISIVF---DRR- 175 (520)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---~~~- 175 (520)
....... ++...+..++..........+..+......+.... ....++.+.+..+. ++.
T Consensus 184 ~~~~~~~-----------~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 252 (662)
T 2z3y_A 184 KIKQKCP-----------LYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHV 252 (662)
T ss_dssp ECCSCCC-----------EECTTSCBCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCEETTEECBHHHHHHHHHHHHHHHH
T ss_pred cccccce-----------EEeCCCcCCCcchhhhhhHHHHHHHHHHHHHHhcccccccCCCCCCHHHHHHHHHHhhhhhh
Confidence 4332211 11222333444333333333333333322221110 11112222111100 000
Q ss_pred ---------------------c-----cccccccccCCCCc-------------chhH---HHHHHHHHHHHHHh--h--
Q 010001 176 ---------------------P-----ELRFFEHVSSSLPG-------------ISLQ---RKLLDLLKLVLTCR--L-- 209 (520)
Q Consensus 176 ---------------------~-----~~~~~~~~~~~~~~-------------~~~~---~~~~~~~~~~~~~~--~-- 209 (520)
. .......+.+.+.. ++.. ..+.+.++.+.... .
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~s~~~~~~~l~~~~~~~~~l~~~~~~ 332 (662)
T 2z3y_A 253 KDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGK 332 (662)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCC--------CCTHHHHHHHHHHHHTTTHHHHHHHTHHHHH
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhcchhhhHHHHhhhhhhhhhcccccccchhhhhhhhhhhHHHHHhhhhhhhhhhhh
Confidence 0 00000000111100 0000 00000111100000 0
Q ss_pred ------------------hhhHHHHHHHHHHhhhhhhcCCcccccccccCcc--ccccCCccccccChHHHHHHHhccCC
Q 010001 210 ------------------EGLAHKVLQWYLCRMEGWFAADAETISLKSWDKE--ELLPGGHGLMVRGYLPVINTLAKGLD 269 (520)
Q Consensus 210 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~G~~~l~~~L~~gv~ 269 (520)
.......+.+++..++...+.....+++..+... +...+.+..+.+|++.++++|+++++
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~~g~~~~~~gG~~~l~~~La~~l~ 412 (662)
T 2z3y_A 333 LEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLD 412 (662)
T ss_dssp HHHHHHHHTTSCCCSCSSCHHHHHHHHHHHHHHHHHTTSCGGGBBTTTTTTTGGGCCBSCCEEETTCTTHHHHHHTTTCE
T ss_pred HHHHHHHhhccCcccccccHHHHHHHHHHHHHHHHhcCCChhhcCHhhcCCCcccccCCceeeecCcHHHHHHHHHhcCc
Confidence 0011223333333333334455566666655543 22456677899999999999999999
Q ss_pred eecCceeEEEEEeCCeEEEEEcC------CcEEEcCEEEEecChhhhhcC--cccccCCCchHHHHHHhhcCCcceeEEE
Q 010001 270 IRLGHRVTKITRHYIGVKVTVEG------GKTFVADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDDLGVGIENKII 341 (520)
Q Consensus 270 i~~~~~V~~I~~~~~~v~V~~~~------g~~~~ad~VI~a~p~~~l~~l--~~~~~~~l~~~~~~~~~~~~~~~~~~v~ 341 (520)
|++|++|++|+.+++++.|++.+ |++++||+||+|+|+..++.+ .+.|.|+||.+..++++++++++..||+
T Consensus 413 I~l~~~V~~I~~~~~~v~V~~~~~~~~~~~~~~~Ad~VI~tvP~~vL~~l~~~i~f~P~LP~~k~~Ai~~l~~g~~~KV~ 492 (662)
T 2z3y_A 413 IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVV 492 (662)
T ss_dssp EETTEEEEEEEEETTEEEEEEEESSCTTCEEEEEESEEEECCCHHHHHCSSCSSEEESCCCHHHHHHHHHSEECCCEEEE
T ss_pred eecCCeEEEEEECCCcEEEEEeecccCCCCeEEEeCEEEECCCHHHHhcccCceEEcCCCCHHHHHHHHhCCccceeEEE
Confidence 99999999999999999888766 568999999999999999863 2678999999999999999999999999
Q ss_pred EEeCCCcccCC-ccceeecCCC---CceeEeeeccCCCCceEEEEEechhhhHHHhcCCHHHHHHHHHHHHHHHCCC--C
Q 010001 342 MHFDKVFWPNV-EFLGVVSDTS---YGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD--A 415 (520)
Q Consensus 342 l~~~~~~~~~~-~~~g~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~~~--~ 415 (520)
+.|++++|++. ..+|.+.+.. .....+++.. +..+|++++.+..+..+..++++++++.++++|+++++. .
T Consensus 493 l~f~~~fW~~~~~~~G~l~~~~~~~~~~~~~~~~~---~~~vL~~~~~G~~a~~~~~lsdee~~~~~l~~L~~~~g~~~~ 569 (662)
T 2z3y_A 493 LCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLY---KAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAV 569 (662)
T ss_dssp EECSSCCSCTTCSEEEECCSSSTTTTEEEEEECCS---SSSEEEEEECTHHHHHHTTSCHHHHHHHHHHHHHHHHCTTSS
T ss_pred EEcCcccccCCCCceeeecCCCCCCCceeEEEeCC---CCCEEEEEeccHhHHHHHhCCHHHHHHHHHHHHHHHhCCccc
Confidence 99999999863 5566654322 1223333322 456888899998888999999999999999999999976 3
Q ss_pred CCCcEEEeccCCCCCCCCccccCCCCCCChhHHHHhcCCC-------------CcEEEeeccccCcCCccchHHHHHHHH
Q 010001 416 SSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV-------------DNLFFAGEATSMSYPGSVHGAFSTGLM 482 (520)
Q Consensus 416 ~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~-------------~~l~~aG~~~~~~~~g~~egAi~SG~~ 482 (520)
++|..+.+++|..++++.|+|++..+|......+.+..|+ ++|||||++++..++||||||+.||.+
T Consensus 570 ~~p~~~~v~~W~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~~~~~~~~~~~~~grl~FAGe~ts~~~~g~v~GAi~SG~r 649 (662)
T 2z3y_A 570 PQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLR 649 (662)
T ss_dssp CCCSEEEECCTTTCTTTSSSCEECBTTCCTHHHHHHHCCBCC---------CCCCEEECSGGGCTTSTTSHHHHHHHHHH
T ss_pred CCCceeEEEEECCCCCCCcccccCCCCCchhhHHHHhCcCccccccccccCCCCcEEEEeccccCCCCcCHHHHHHHHHH
Confidence 5788999999999999999999888888766666665554 799999999998778999999999999
Q ss_pred HHHHHHHHH
Q 010001 483 AAEDCRMRV 491 (520)
Q Consensus 483 aA~~i~~~l 491 (520)
||++|++.+
T Consensus 650 aA~~i~~~~ 658 (662)
T 2z3y_A 650 EAGRIADQF 658 (662)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999988764
No 4
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=100.00 E-value=4.4e-42 Score=362.07 Aligned_cols=425 Identities=31% Similarity=0.536 Sum_probs=307.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCC-CCcccccccceecCCCCCCchHHHHHHcCCCee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS-FGFPVDLGASWLHGVCQENPLAPVISRLGLPLY 105 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~ 105 (520)
..+||+|||||++||+||+.|+++|++|+|+|+.+++||++++... +|+.+|.|++++++. ..+.+..+.+++|++..
T Consensus 335 ~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggri~T~~~~~G~~vd~Ga~~i~G~-~~np~~~l~~~lGl~~~ 413 (776)
T 4gut_A 335 HNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNGC-INNPVALMCEQLGISMH 413 (776)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTTCCEECCSTTCCEESSCCEEECC-TTCHHHHHHHHHTCCCE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceeceeeeccccCCeEeccCCeEEeCC-ccChHHHHHHHhCCccc
Confidence 4689999999999999999999999999999999999999988654 689999999999875 35667889999999755
Q ss_pred eecCCCccccccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhhc--CCCCCcHHHHHHHHHhcCcccccccc
Q 010001 106 RTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREE--HDEDMSIQRAISIVFDRRPELRFFEH 183 (520)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (520)
........+ ...+..............+..+.......... ...+.++...+...+.
T Consensus 414 ~~~~~~~l~-----------~~~g~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~d~sl~~~~~~~~~---------- 472 (776)
T 4gut_A 414 KFGERCDLI-----------QEGGRITDPTIDKRMDFHFNALLDVVSEWRKDKTQLQDVPLGEKIEEIYK---------- 472 (776)
T ss_dssp ECCSCCCEE-----------CTTSCBCCHHHHHHHHHHHHHHHHHHHHHGGGCCGGGCCBHHHHHHHHHH----------
T ss_pred ccccccceE-----------ccCCcccchhHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHH----------
Confidence 433222221 12223333333333333333333333322211 1112233222211110
Q ss_pred ccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCcccccccccCcc---ccccCCccccccChHHH
Q 010001 184 VSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKE---ELLPGGHGLMVRGYLPV 260 (520)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~G~~~l 260 (520)
.+++.. ...........+.+....+....+.....++...+... ....+....+.+|++.+
T Consensus 473 ---------------~~l~~~-gv~~~~l~~~~l~~~~~~l~~~~G~~l~~ls~~~~~~~~~~~~~~G~~~~~~~G~~~l 536 (776)
T 4gut_A 473 ---------------AFIKES-GIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTPGYSVI 536 (776)
T ss_dssp ---------------HHHHHS-CCCCCHHHHHHHHHHHHHHHHHHTSCTTSBBTTTTTGGGGSCCCCSCEEECTTCTHHH
T ss_pred ---------------HHHHhc-CCCccchhHHHHHHHHHHHHHhcCCChHHcChhhhhhhhhHHhcCCCeEEECChHHHH
Confidence 000000 00000011222222222233345555666665554432 12344556788999999
Q ss_pred HHHHhccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCchHHHHHHhhcCCcceeEE
Q 010001 261 INTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKI 340 (520)
Q Consensus 261 ~~~L~~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~v 340 (520)
+++|++|++|+++++|++|+.++++|.|++.+|+++.||+||+|+|+..++...+.|.|+||....+.+.++++++..++
T Consensus 537 ~~aLa~gl~I~l~t~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~P~~vL~~~~i~f~P~Lp~~~~~ai~~l~~g~~~KV 616 (776)
T 4gut_A 537 IEKLAEGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKI 616 (776)
T ss_dssp HHHHHTTSCEESSCCEEEEECSSSSEEEEETTCCEEEESEEEECCCHHHHHTTCSEEESCCCHHHHHHHHHEEEECCEEE
T ss_pred HHHHHhCCcEEcCCeeEEEEEcCCEEEEEECCCcEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHhCCCeeEEEE
Confidence 99999999999999999999999999999999989999999999999999866778999999999999999999999999
Q ss_pred EEEeCCCcccCC----ccceeecCC---CCceeEeeeccCCCCceEEEEEechhhhHHHhcCCHHHHHHHHHHHHHHHCC
Q 010001 341 IMHFDKVFWPNV----EFLGVVSDT---SYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP 413 (520)
Q Consensus 341 ~l~~~~~~~~~~----~~~g~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~~ 413 (520)
++.|+.+||++. .++|.+... ......+.+..+.++..+|+.++.+..+..+..++++++++.++++|+++++
T Consensus 617 ~l~f~~~FW~~~~~g~~~fG~l~~~~~~~~~~~~~~d~~p~g~~~vL~~~i~G~~a~~l~~lsdeel~~~~l~~L~~ifg 696 (776)
T 4gut_A 617 ALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFK 696 (776)
T ss_dssp EEECSSCTTHHHHTTCSEEEECCSSGGGTTEEEEEEESCTTSCSCEEEEEECTHHHHHHHTSCHHHHHHHHHHHHHHHTT
T ss_pred EEecCcccccccCCCCceEEeecCCcCCCceEEEEecCCCCCCceEEEEEecchhHHHHHcCCHHHHHHHHHHHHHHHhC
Confidence 999999999853 345554432 1223334444434445789999999888889999999999999999999997
Q ss_pred C--CCCCcEEEeccCCCCCCCCccccCCCCCCChhHHHHhcCCC-CcEEEeeccccCcCCccchHHHHHHHHHHHHHHH
Q 010001 414 D--ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV-DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 489 (520)
Q Consensus 414 ~--~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~-~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~ 489 (520)
. .+.|..+.+++|..++++.|+|.+..++......+.+..|+ ++|+|||++++..++|+||||+.||.+||++|+.
T Consensus 697 ~~~~~~P~~~~vt~W~~dp~s~Gsys~~~~g~~~~~~~~L~~p~~grL~FAGE~Ts~~~~gtveGAi~SG~RaA~~Ila 775 (776)
T 4gut_A 697 EQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKIAA 775 (776)
T ss_dssp TSCCCCCSEEEECCGGGCTTTCCSEEEEBTTCCTHHHHHHHCCBTTTEEECSGGGCSSSCSSHHHHHHHHHHHHHHHHC
T ss_pred cccccCcceEEEecCCCCCccCCCCCccCCCCchhHHHHHhCcCCCcEEEEehhhcCCCCcCHHHHHHHHHHHHHHHHh
Confidence 5 46788999999999999999999877787766777888886 8999999999987889999999999999999874
No 5
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=100.00 E-value=8.8e-43 Score=356.87 Aligned_cols=422 Identities=21% Similarity=0.270 Sum_probs=286.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcCC--Ceee
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGL--PLYR 106 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~--~~~~ 106 (520)
+||+|||||++||+||+.|+++|++|+|||+++++||+++|...+|+.+|.|++++++ .+.++.++++++|+ +..+
T Consensus 40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~~--~~~~~~~~l~~lgl~~~~~~ 117 (495)
T 2vvm_A 40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHW--HQSHVWREITRYKMHNALSP 117 (495)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEEETTEEEECSCCCBCT--TSHHHHHHHHHTTCTTCEEE
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceecccCCeeecCCCeEecC--ccHHHHHHHHHcCCcceeec
Confidence 8999999999999999999999999999999999999999998899999999999874 34678899999999 4433
Q ss_pred ec----CCCccccccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhcCccccccc
Q 010001 107 TS----GDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRFFE 182 (520)
Q Consensus 107 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (520)
.. ....+++.+.. .....++.... ...+...+............. ++ ..+...+..
T Consensus 118 ~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~ 177 (495)
T 2vvm_A 118 SFNFSRGVNHFQLRTNP-------TTSTYMTHEAE---DELLRSALHKFTNVDGTNGRT---------VL-PFPHDMFYV 177 (495)
T ss_dssp SCCCSSSCCEEEEESST-------TCCEEECHHHH---HHHHHHHHHHHHCSSSSTTTT---------TC-SCTTSTTSS
T ss_pred ccccCCCceEEEecCCC-------CceeecCHHHH---HHHHHHHHHHHHccchhhhhh---------cC-CCCCCcccC
Confidence 32 11111111100 11112232111 111111111111100000000 00 000000000
Q ss_pred cccCCCCcchhHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHhh-hhhhcCCcccccccccCcccc----------ccCC
Q 010001 183 HVSSSLPGISLQRKLLDLLKLVLTCRLEG--LAHKVLQWYLCRM-EGWFAADAETISLKSWDKEEL----------LPGG 249 (520)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------~~~g 249 (520)
.....++..+ +.++++ +.+ +++.. ..++.++ ...++.++..+++..+..... ...+
T Consensus 178 ~~~~~~~~~s----~~~~l~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 246 (495)
T 2vvm_A 178 PEFRKYDEMS----YSERID------QIRDELSLNE-RSSLEAFILLCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLM 246 (495)
T ss_dssp TTHHHHHTSB----HHHHHH------HHGGGCCHHH-HHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSSHHHHHHHHH
T ss_pred cchhhhhhhh----HHHHHH------HhhccCCHHH-HHHHHHHHHHhcCCCcchhhHHHHHHHHHHcCCCHHHHHhhhc
Confidence 0000001111 222222 222 33333 2333333 445666777766654332110 0123
Q ss_pred ccccccChHHHHHHHhc-----c-CCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCch
Q 010001 250 HGLMVRGYLPVINTLAK-----G-LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPD 323 (520)
Q Consensus 250 ~~~~~~G~~~l~~~L~~-----g-v~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~l~~ 323 (520)
...+.+|+..++++|.+ | ++|+++++|++|+.+++++.|++.+|+++.||+||+|+|+..+..+ .+.|+||.
T Consensus 247 ~~~~~gG~~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~l~~i--~~~p~lp~ 324 (495)
T 2vvm_A 247 SYKFKDGQSAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLSTI--QFSPALST 324 (495)
T ss_dssp SEEETTCHHHHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGGGGGGS--EEESCCCH
T ss_pred eEEeCCCHHHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHHHhhe--eeCCCCCH
Confidence 45678999999988853 4 7799999999999988889999999988999999999999998753 47789999
Q ss_pred HHHHHHhhcCCcceeEEEEEeCCCcccCCccceeecCCCCceeEeeeccCCCCceEEEEEechhhhHHHhcCCHHHHHHH
Q 010001 324 WKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANF 403 (520)
Q Consensus 324 ~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~ 403 (520)
...+.++.+.+.+..++++.|++++|. .+.|...++......+.+...+.+..+++++.... . .+++++..+.
T Consensus 325 ~~~~ai~~~~~~~~~kv~l~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~-~----~~~~~e~~~~ 397 (495)
T 2vvm_A 325 ERISAMQAGHVSMCTKVHAEVDNKDMR--SWTGIAYPFNKLCYAIGDGTTPAGNTHLVCFGNSA-N----HIQPDEDVRE 397 (495)
T ss_dssp HHHHHHHHCCCCCCEEEEEEESCGGGG--GEEEEECSSCSSCEEEEEEECTTSCEEEEEEECST-T----CCCTTTCHHH
T ss_pred HHHHHHHhcCCCceeEEEEEECCccCC--CceeEecCCCCcEEEecCCCCCCCCeEEEEEeCcc-c----cCCCHHHHHH
Confidence 999999999999999999999999884 45665544433334444434455667777766432 1 1456677888
Q ss_pred HHHHHHHHCCCCCCCcEEEeccCCCCCCCCccccCCCCCCChhHHHHhcCCCCcEEEeeccccCcCCccchHHHHHHHHH
Q 010001 404 AFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMA 483 (520)
Q Consensus 404 ~~~~L~~~~~~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egAi~SG~~a 483 (520)
++++|++++|...+|..+.+++|..++++.|+|.+..++......+.+++|.+||||||++++..++++||||+.||.+|
T Consensus 398 ~~~~L~~~~~~~~~~~~~~~~~W~~dp~~~g~y~~~~~g~~~~~~~~l~~p~~~l~fAGe~t~~~~~g~veGAi~SG~ra 477 (495)
T 2vvm_A 398 TLKAVGQLAPGTFGVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQGLREKHGGVVFANSDWALGWRSFIDGAIEEGTRA 477 (495)
T ss_dssp HHHHHHTTSTTSCCEEEEEECCTTTCTTTSSSSCCCCTTHHHHHHHHHHCCBTTEEECCGGGCSSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCceEEEEeEcCCCCCCCCCccCcCCCcchhhHHHHhCcCCCEEEechhhhcCCceEEEhHHHHHHHH
Confidence 99999999987677888999999999999999988888876667888999999999999999976779999999999999
Q ss_pred HHHHHHHHH
Q 010001 484 AEDCRMRVL 492 (520)
Q Consensus 484 A~~i~~~l~ 492 (520)
|++|++.+.
T Consensus 478 A~~i~~~l~ 486 (495)
T 2vvm_A 478 ARVVLEELG 486 (495)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999887653
No 6
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=100.00 E-value=8.3e-42 Score=361.77 Aligned_cols=452 Identities=33% Similarity=0.538 Sum_probs=305.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcCCCee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY 105 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~ 105 (520)
...+||+|||||++||+||+.|+++|++|+|||+.+++||++.+.+..|+.+|.|++++++. ..+.+..+.+++|++..
T Consensus 276 ~~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~l~~~lg~~~~ 354 (852)
T 2xag_A 276 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGL-GGNPMAVVSKQVNMELA 354 (852)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEEETTEEEESSCCEECCS-BTCHHHHHHHHTTCCEE
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCceeeecccccchhcCceEecCC-CCchHHHHHHHhCCchh
Confidence 45689999999999999999999999999999999999999999888899999999998765 34567888999999765
Q ss_pred eecCCCccccccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhhcC------CCCCcHHHHHHHHH---hcCc
Q 010001 106 RTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEH------DEDMSIQRAISIVF---DRRP 176 (520)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---~~~~ 176 (520)
.......+ +...+..++..........+..+......+.... ....++.+.+..+. .+..
T Consensus 355 ~~~~~~~~-----------~~~~G~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~slg~~~e~v~~~~er~~ 423 (852)
T 2xag_A 355 KIKQKCPL-----------YEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHV 423 (852)
T ss_dssp ECCCCCCE-----------ECTTSCBCCHHHHHHHHHHHHHHHHHHHHHHHTSCCCEETTEECBHHHHHHHHHHHHHHHH
T ss_pred hccccceE-----------EecCCccccchhhhhhhhhhhhhHHHHHHHhhhhhhhcccCCCccHHHHHHHhhhhhhhhc
Confidence 43322111 1122233333322222222222222211111100 00111111110000 0000
Q ss_pred ------------------------------c-cccc---ccccCCC--Cc----chh---HHHHHHHHHHHHHH--hh--
Q 010001 177 ------------------------------E-LRFF---EHVSSSL--PG----ISL---QRKLLDLLKLVLTC--RL-- 209 (520)
Q Consensus 177 ------------------------------~-~~~~---~~~~~~~--~~----~~~---~~~~~~~~~~~~~~--~~-- 209 (520)
. ..+. ..+.... .. ++. ...+.+.++.+... ..
T Consensus 424 ~~e~l~~~~~i~~~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~p~~~~~e~s~rs~~~~l~~~~~~~~~l~~~~~~ 503 (852)
T 2xag_A 424 KDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGK 503 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHhhhhhhhhhhhhhhHHHHHHhHHHHHHHHHHHhhhhcccccccchhhhhhhhhhhhHHHHHHHHhhhhhhhhh
Confidence 0 0000 0000000 00 000 00011111111000 00
Q ss_pred ------------------hhhHHHHHHHHHHhhhhhhcCCcccccccccCcc--ccccCCccccccChHHHHHHHhccCC
Q 010001 210 ------------------EGLAHKVLQWYLCRMEGWFAADAETISLKSWDKE--ELLPGGHGLMVRGYLPVINTLAKGLD 269 (520)
Q Consensus 210 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~G~~~l~~~L~~gv~ 269 (520)
......++.+++..++...+.....+++..|... +...+.+..+.+|++.|+++|+++++
T Consensus 504 l~~~l~~l~~~~~~~~~ls~~~~~~l~~~~~~~e~~~~~~l~~lSl~~~~~~~~~~~~g~~~~~~gG~~~L~~aLa~~l~ 583 (852)
T 2xag_A 504 LEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLD 583 (852)
T ss_dssp HHHTTHHHHHSCCCSCSSCTTHHHHHHHHHHHHHHHHTSCTTTBBTTTTTGGGGGCCBSCCEEETTCTTHHHHHHTTTCC
T ss_pred HHHHHHhhhccCcccccCCHHHHHHHHHHHhhhcccccCChHhhhhhhhhhccccccCCceEEecCcHHHHHHHHHhCCC
Confidence 0011223333333333334455556666555533 22456677899999999999999999
Q ss_pred eecCceeEEEEEeCCeEEEEEcC------CcEEEcCEEEEecChhhhhcC--cccccCCCchHHHHHHhhcCCcceeEEE
Q 010001 270 IRLGHRVTKITRHYIGVKVTVEG------GKTFVADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDDLGVGIENKII 341 (520)
Q Consensus 270 i~~~~~V~~I~~~~~~v~V~~~~------g~~~~ad~VI~a~p~~~l~~l--~~~~~~~l~~~~~~~~~~~~~~~~~~v~ 341 (520)
|++|++|++|..++++|.|++.+ |++++||+||+|+|+..++.+ .+.|.|+||.+..+++.++++++..+|+
T Consensus 584 I~Lnt~V~~I~~~~~gV~V~~~~~~~~~~g~~i~AD~VIvTvPl~vLk~l~~~I~F~P~LP~~k~~AI~~l~~g~v~KV~ 663 (852)
T 2xag_A 584 IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVV 663 (852)
T ss_dssp EECSEEEEEEEEETTEEEEEEEESSSTTCEEEEEESEEEECCCHHHHHCSSCSSEEESCCCHHHHHHHHHSEECCCEEEE
T ss_pred EEeCCeEEEEEEcCCcEEEEEeecccCCCCeEEECCEEEECCCHHHHHhhhcccccCCCCCHHHHHHHHcCCccceEEEE
Confidence 99999999999999999888765 568999999999999999873 3578999999999999999999999999
Q ss_pred EEeCCCcccC-CccceeecCCC---CceeEeeeccCCCCceEEEEEechhhhHHHhcCCHHHHHHHHHHHHHHHCCC--C
Q 010001 342 MHFDKVFWPN-VEFLGVVSDTS---YGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD--A 415 (520)
Q Consensus 342 l~~~~~~~~~-~~~~g~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~~~--~ 415 (520)
+.|++++|++ ...+|.+.... ....++++.. +..+|++++.+..+..+..++++++++.++++|+++++. .
T Consensus 664 L~F~~~fW~~~~~~fG~l~~~~~~~~~l~~~~~~~---~~pvLl~~v~G~~a~~l~~lsdeel~~~~l~~L~~ifG~~~~ 740 (852)
T 2xag_A 664 LCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLY---KAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAV 740 (852)
T ss_dssp EECSSCCSCTTCCEEEECCSSSTTTTTTCEEEECS---SSSEEEEEECHHHHHHGGGSCHHHHHHHHHHHHHHHHCTTTC
T ss_pred EEcCCcccCCCCCeeeeeccccCCCCceEEEecCC---CCCEEEEEecCcCHHHHhcCCHHHHHHHHHHHHHHHhCcccc
Confidence 9999999986 35566653321 1222333322 345888899998888899999999999999999999976 3
Q ss_pred CCCcEEEeccCCCCCCCCccccCCCCCCChhHHHHhcCCC-------------CcEEEeeccccCcCCccchHHHHHHHH
Q 010001 416 SSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV-------------DNLFFAGEATSMSYPGSVHGAFSTGLM 482 (520)
Q Consensus 416 ~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~-------------~~l~~aG~~~~~~~~g~~egAi~SG~~ 482 (520)
.+|..+.+++|..++++.|+|.+..+|......+.+..|+ ++|||||++++..++||||||+.||.+
T Consensus 741 ~~P~~~~vtrW~~dp~s~GsYs~~~pG~~~~~~~~L~~P~~~~~~~p~~~~~~grL~FAGE~Ts~~~~gtveGAi~SG~R 820 (852)
T 2xag_A 741 PQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLR 820 (852)
T ss_dssp CCCSEEEECCTTTCTTTSSSCEECBTTCCTTHHHHTTSCBCCCCSSTTCCCCCCCEEECSGGGCTTSTTSHHHHHHHHHH
T ss_pred CCceEEEEEecCCCCCcCccccccCCCcchhhHHHHhCccccccccccccCCCCcEEEEehhHhCCCCcCHHHHHHHHHH
Confidence 5788999999999999999999888888766666665554 699999999998778999999999999
Q ss_pred HHHHHHHHHH
Q 010001 483 AAEDCRMRVL 492 (520)
Q Consensus 483 aA~~i~~~l~ 492 (520)
||++|++.+.
T Consensus 821 AA~~Il~~l~ 830 (852)
T 2xag_A 821 EAGRIADQFL 830 (852)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988775
No 7
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=100.00 E-value=6.6e-42 Score=351.34 Aligned_cols=424 Identities=28% Similarity=0.412 Sum_probs=277.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCC-CcEEEEeccCCCCceeeecCC-CCcccccccceecCCCCCCchHHHHHHcCCCe
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRDRVGGRVHTDYS-FGFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G-~~V~vlE~~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (520)
+++||+|||||+|||+||+.|+++| ++|+|||+++++||+++|... +|+.+|.|++++++.. .+.+..++.++++..
T Consensus 7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t~~~~~G~~~D~G~~~~~~~~-~~~~~~~~~~lg~~~ 85 (516)
T 1rsg_A 7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTL-TNPLFLEEAQLSLND 85 (516)
T ss_dssp EEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCEEECGGGCEEESSCCEECCTT-TCHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceeeeecCCCcEEecCCeEEecCC-CChHHHHHHHhCCCC
Confidence 3579999999999999999999999 999999999999999999876 7999999999987542 345667777777631
Q ss_pred eeecCCCccccccCccceeeecCCCCccC---HHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhcCcccccc
Q 010001 105 YRTSGDNSVLYDHDLESYALFDMDGNQVP---QELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRFF 181 (520)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (520)
.. ....+.++. ..........+. ......+.+.+.++...... ......+.++.+++...+.+..
T Consensus 86 ~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~s~~~~l~~~l~~~~----- 153 (516)
T 1rsg_A 86 GR----TRFVFDDDN--FIYIDEERGRVDHDKELLLEIVDNEMSKFAELEFH-QHLGVSDCSFFQLVMKYLLQRR----- 153 (516)
T ss_dssp CC----CCEECCCCC--CEEEETTTEECTTCTTTCHHHHHHHHHHHHHHHC--------CCBHHHHHHHHHHHHG-----
T ss_pred cc----eeEEECCCC--EEEEcCCCccccccHHHHHHHHHHHHHHHHHHHhh-hccCCCCCCHHHHHHHHHHHhh-----
Confidence 10 001111110 000111111110 01111111222222111100 0011223445444433222110
Q ss_pred ccccCCCCcchhHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHhhhhhhcCCcccccccccCccccccCCccccccChH
Q 010001 182 EHVSSSLPGISLQRKLLDLLKLVLTCRLEGLA---HKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYL 258 (520)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~ 258 (520)
..+. ......+...+..+++.+...++...+... ..+...++.+ ++
T Consensus 154 ----------------------------~~l~~~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~--~~~~~~~~~g-~~ 202 (516)
T 1rsg_A 154 ----------------------------QFLTNDQIRYLPQLCRYLELWHGLDWKLLSAKDTYFG--HQGRNAFALN-YD 202 (516)
T ss_dssp ----------------------------GGSCHHHHHHHHHHHGGGHHHHTBCTTTSBHHHHCCC--CSSCCEEESC-HH
T ss_pred ----------------------------cccCHHHHHHHHHHHHHHHHHhCCChHHCChHHHHhh--ccCcchhhhC-HH
Confidence 0000 111122222233445555555554443322 1223334555 99
Q ss_pred HHHHHHhccC---CeecCceeEEEEEe-CCeEEEEEcCCcEEEcCEEEEecChhhhhcC---------cccccCCCchHH
Q 010001 259 PVINTLAKGL---DIRLGHRVTKITRH-YIGVKVTVEGGKTFVADAVVVAVPLGVLKAR---------TIKFEPRLPDWK 325 (520)
Q Consensus 259 ~l~~~L~~gv---~i~~~~~V~~I~~~-~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~l---------~~~~~~~l~~~~ 325 (520)
.++++|++.+ +|++|++|++|..+ ++++.|++.+|+++.||+||+|+|+..+... .+.|.|+||...
T Consensus 203 ~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~p~~~l~~~~~~~~~~~~~i~f~P~Lp~~~ 282 (516)
T 1rsg_A 203 SVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVI 282 (516)
T ss_dssp HHHHHHHTTSCGGGEETTCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCHHHHHGGGSSCSCSTTCCEEESCCCHHH
T ss_pred HHHHHHHHhCCCCEEEECCEEEEEEEcCCCeEEEEECCCcEEECCEEEECCCHHHhhhccccccccccceEecCCCCHHH
Confidence 9999998654 69999999999986 5679999999988999999999999998643 367889999999
Q ss_pred HHHHhhcCCcceeEEEEEeCCCcccCCc-cceeecCCC---------------------------------C-ceeEeee
Q 010001 326 EAAIDDLGVGIENKIIMHFDKVFWPNVE-FLGVVSDTS---------------------------------Y-GCSYFLN 370 (520)
Q Consensus 326 ~~~~~~~~~~~~~~v~l~~~~~~~~~~~-~~g~~~~~~---------------------------------~-~~~~~~~ 370 (520)
.++++++++++..||++.|+++||++.. .+....... + ...++.+
T Consensus 283 ~~ai~~~~~~~~~Kv~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (516)
T 1rsg_A 283 QDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVN 362 (516)
T ss_dssp HHHTTSSCCCCCEEEEEEESSCCSCCSCSEEEECCCCCHHHHHHHHHCCSHHHHHHHC---------CCCTTSSCEEEEE
T ss_pred HHHHHhCCCCcceEEEEEeCCCCCCCCCCcEEEeCCCCccchhhcccCcccchhhhcccccccccccccccccCceeEEE
Confidence 9999999999999999999999998642 111111100 0 0111222
Q ss_pred ccCCCCceEEEEEechhhhHHHhcC--CHHHHHHH---HHHHHHHHCC------CCCC---------Cc--EEEeccCCC
Q 010001 371 LHKATGHCVLVYMPAGQLARDIEKM--SDEAAANF---AFTQLKKILP------DASS---------PI--QYLVSHWGT 428 (520)
Q Consensus 371 ~~~~~~~~~l~~~~~~~~~~~~~~~--~~ee~~~~---~~~~L~~~~~------~~~~---------~~--~~~~~~w~~ 428 (520)
.....+..+|++++.++.+..++.+ +++++.+. ++++|.++++ .... |. .+.+++|..
T Consensus 363 ~~~~~~~~~L~~~~~g~~a~~~~~l~~~~~~~~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~a~~p~~~~~~~~~W~~ 442 (516)
T 1rsg_A 363 LSKSTGVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTR 442 (516)
T ss_dssp HHHHTSCSEEEEEECBTHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTTCCCCEECCC-------CCSCEEEEEEECCTTT
T ss_pred eeecCCCcEEEEEecchHHHHHHhcCCCHHHHHHHHHHHHHHHHhhccccccccCCCCcccccccCCCccceEEEecCCC
Confidence 2234466788899999888888888 88888654 6667766664 2221 44 788999999
Q ss_pred CCCCCccccCCCCCCCh-hHHHHhc-CCCCcEEEeeccccCcCCccchHHHHHHHHHHHHHHHHHHHH
Q 010001 429 DANSLGSYSYDTVGKSH-DLYERLR-IPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 494 (520)
Q Consensus 429 ~~~~~g~~~~~~~~~~~-~~~~~~~-~p~~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~~l~~~ 494 (520)
++++.|+|++..+|... ...+.+. .+.++|||||++++..++|||+||+.||.+||++|++.+...
T Consensus 443 dp~~~Gsys~~~~g~~~~~~~~~l~~~~~~rl~FAGe~ts~~~~g~v~GA~~SG~raA~~i~~~~~~~ 510 (516)
T 1rsg_A 443 DPYSRGAYSACFPGDDPVDMVVAMSNGQDSRIRFAGEHTIMDGAGCAYGAWESGRREATRISDLLKLE 510 (516)
T ss_dssp CTTTTTCCCCCBC----CHHHHHHHHCSSSSEEECSTTSCSTTBTSHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CCCCCccCCCcCCCCCHHHHHHHhccCCCCcEEEeccccccCCCccchhHHHHHHHHHHHHHHHhhhh
Confidence 99999999988787743 3445554 577899999999998777999999999999999999987765
No 8
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=100.00 E-value=3.2e-40 Score=335.34 Aligned_cols=426 Identities=30% Similarity=0.453 Sum_probs=285.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCCCCceeeecCCCCcccccccceecCCC--CCCchHHHHHH-cCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVC--QENPLAPVISR-LGL 102 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~--~~~~~~~l~~~-lg~ 102 (520)
..+||+|||||++||++|+.|+++|+ +|+|+|+++++||++++....|+.+|.|++++++.. ..+.+.+++++ +|+
T Consensus 3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~lgl 82 (472)
T 1b37_A 3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKL 82 (472)
T ss_dssp --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETTEEEESSCCEEEEESSSSCCTHHHHHHTTSCC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceeecccCCcEEeeCCeEEeccCCCCCCHHHHHHHhhcCC
Confidence 56899999999999999999999999 899999999999999998889999999999997532 34568899999 999
Q ss_pred CeeeecCCCccccccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhh----cCCCCCcHHHHHHHHHhcCccc
Q 010001 103 PLYRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVRE----EHDEDMSIQRAISIVFDRRPEL 178 (520)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 178 (520)
+.......... ...+...+..++..........+..+......... ...++.+.... ..+.+....
T Consensus 83 ~~~~~~~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~l~~~~~~ 152 (472)
T 1b37_A 83 RNFRSDFDYLA--------QNVYKEDGGVYDEDYVQKRIELADSVEEMGEKLSATLHASGRDDMSILAM--QRLNEHQPN 152 (472)
T ss_dssp CEEECCCTTGG--------GCEECSSSSBCCHHHHHHHHHHHHHHHHHHHHHHHTSCTTCTTCCBHHHH--HHHHHTSSS
T ss_pred ceeeccCcccc--------ceeEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHH--HHHhhhccc
Confidence 86542221110 01111222333332221111111111111111110 01112222110 000000000
Q ss_pred cccccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCcccccccccCccc---cccCCcc--cc
Q 010001 179 RFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEE---LLPGGHG--LM 253 (520)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~--~~ 253 (520)
. ...--+.+++.+.. ...+..+....++..+.... ...++.. .+
T Consensus 153 ~-----------------------------~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 201 (472)
T 1b37_A 153 G-----------------------------PATPVDMVVDYYKF--DYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVAD 201 (472)
T ss_dssp S-----------------------------CCSHHHHHHHHHHT--HHHHSSCGGGBBSTTTSSCHHHHHHCSEEEEECC
T ss_pred c-----------------------------cccHHHHHHHHHHH--hhhhcccccccchhhccccccccccCCceeeeec
Confidence 0 00000111121111 11123333344433222110 0111111 23
Q ss_pred ccChHHHHHHHhc-------------cCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCC
Q 010001 254 VRGYLPVINTLAK-------------GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPR 320 (520)
Q Consensus 254 ~~G~~~l~~~L~~-------------gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~ 320 (520)
.+|++.++++|++ |++|+++++|++|+.+++++.|++.+|++++||+||+|+|+..+..+++.+.|+
T Consensus 202 ~gG~~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~l~~~~~~~~p~ 281 (472)
T 1b37_A 202 QRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPK 281 (472)
T ss_dssp TTCTTHHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHHHHHTTSSEEESC
T ss_pred CCcHHHHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCcEEEEECCCCEEEcCEEEEecCHHHhccCCeeECCC
Confidence 6899999998863 358999999999999999999999999899999999999999998877778899
Q ss_pred CchHHHHHHhhcCCcceeEEEEEeCCCcccCCccceeec--CCC-CceeEeeecc-CCCCceEEEEEechhhhHHHhcCC
Q 010001 321 LPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVS--DTS-YGCSYFLNLH-KATGHCVLVYMPAGQLARDIEKMS 396 (520)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~--~~~-~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~ 396 (520)
||+...+++.++.+.+..++++.|+.++|++....+++. +.. .....+...+ ..++..++++++.+..+..|..++
T Consensus 282 Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~a~~~~~~~ 361 (472)
T 1b37_A 282 LPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQS 361 (472)
T ss_dssp CCHHHHHHHHHSEEECEEEEEEECSSCCSCCSTTCSEEEECCSSTTSSCEEEECTTTSTTCCEEEEEEEHHHHHHHHTSC
T ss_pred CCHHHHHHHHhcCCcceeEEEEECCCcCCCCCCCcceEEecccCCccceeeecccCCCCCCCEEEEEechHHHHHHHhCC
Confidence 999999999999999999999999999998632222221 111 1111222211 123456676677666667788899
Q ss_pred HHHHHHHHHHHHHHHCCC--CCCCcEEEeccCCCCCCCCccccCCCCCCChhHHHHhcCCCCcEEEeeccccCcCCccch
Q 010001 397 DEAAANFAFTQLKKILPD--ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVH 474 (520)
Q Consensus 397 ~ee~~~~~~~~L~~~~~~--~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~e 474 (520)
++++.+.++++|++++|+ .+++..+.+.+|..++++.|+|.+..+|.....++.+++|++||||||++++..++|+++
T Consensus 362 ~~e~~~~~l~~L~~~~Pg~~~~~~~~~~~~~W~~~~~~~G~~~~~~~g~~~~~~~~l~~p~~~l~fAG~~t~~~~~g~v~ 441 (472)
T 1b37_A 362 DEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVH 441 (472)
T ss_dssp HHHHHHHHHHHHHHHCTTSCCCCCSEEECCCTTTCTTTSSSEEECBTTCCHHHHHHHHCCBTTEEECSGGGCTTTTTSHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCceEEecccCCCCCCCcccCCCCCCCChhHHHHHhccCCcEEEeecccCCCCCCchh
Confidence 999999999999999976 457788889999999999999987778887667888999999999999999986678999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010001 475 GAFSTGLMAAEDCRMRVLE 493 (520)
Q Consensus 475 gAi~SG~~aA~~i~~~l~~ 493 (520)
||+.||.+||++|+..+..
T Consensus 442 GA~~SG~~aA~~i~~~l~~ 460 (472)
T 1b37_A 442 GAYLSGIDSAEILINCAQK 460 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988765
No 9
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=100.00 E-value=7.1e-40 Score=335.59 Aligned_cols=420 Identities=21% Similarity=0.284 Sum_probs=276.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecC--CCCcccccccceecCCCCCCchHHHHHHcCCC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY--SFGFPVDLGASWLHGVCQENPLAPVISRLGLP 103 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~--~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~ 103 (520)
..++||+|||||++||+||+.|+++|++|+|+|+++++||++.+.. ..|+.+|.|+++++. .+..+.++++++|++
T Consensus 31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~g~~ 108 (498)
T 2iid_A 31 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPE--KHRIVREYIRKFDLR 108 (498)
T ss_dssp SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEET--TCHHHHHHHHHTTCC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCCCCchhhcCcccccc--hHHHHHHHHHHhCCC
Confidence 4578999999999999999999999999999999999999998876 568999999998863 345689999999997
Q ss_pred eeeecC--CCccccccCccc-ee----eecCCCCccCH-----HHHHHHHHHHHHHHHHHHHhh----hcCCCCCcHHHH
Q 010001 104 LYRTSG--DNSVLYDHDLES-YA----LFDMDGNQVPQ-----ELVTKVGEAFESILKETDKVR----EEHDEDMSIQRA 167 (520)
Q Consensus 104 ~~~~~~--~~~~~~~~~~~~-~~----~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 167 (520)
...... ........+... .. ........+.+ .....+...+.++........ .......++.++
T Consensus 109 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 188 (498)
T 2iid_A 109 LNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEY 188 (498)
T ss_dssp EEEECSCCTTSEEEETTEEEEHHHHHHCGGGGCCCCCGGGTTCCHHHHHHHHTHHHHHHHHHSCHHHHHHHHTTSBHHHH
T ss_pred ceeecccCCccEEEeCCeeecccccccCccccccCCCccccCCCHHHHHHHHHHHHHHHHhhccHHHHHHHhhhhhHHHH
Confidence 543321 111111111000 00 00000000000 000001111111111110000 000001111111
Q ss_pred HHHHHhcCccccccccccCCCCcchhHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHhhhh---hhcCCcccccccccCcc
Q 010001 168 ISIVFDRRPELRFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEG-LAHKVLQWYLCRMEG---WFAADAETISLKSWDKE 243 (520)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 243 (520)
+. ..+ ++......+...+.. ++......+... ..
T Consensus 189 l~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 226 (498)
T 2iid_A 189 LI---------------------------------------KEGDLSPGAVDMIGDLLNEDSGYYVSFIESLKHD---DI 226 (498)
T ss_dssp HH---------------------------------------HTSCCCHHHHHHHHHHTTCGGGTTSBHHHHHHHH---HH
T ss_pred HH---------------------------------------HccCCCHHHHHHHHHhcCcccchhHHHHHHHHHH---hc
Confidence 11 000 111111111111100 000000000000 00
Q ss_pred ccccCCccccccChHHHHHHHhccC--CeecCceeEEEEEeCCeEEEEEcCCc----EEEcCEEEEecChhhhhcCcccc
Q 010001 244 ELLPGGHGLMVRGYLPVINTLAKGL--DIRLGHRVTKITRHYIGVKVTVEGGK----TFVADAVVVAVPLGVLKARTIKF 317 (520)
Q Consensus 244 ~~~~~g~~~~~~G~~~l~~~L~~gv--~i~~~~~V~~I~~~~~~v~V~~~~g~----~~~ad~VI~a~p~~~l~~l~~~~ 317 (520)
.....++..+.+|++.++++|++.+ +|+++++|++|+.+++++.|++.+|+ +++||+||+|+|+..+. .+.|
T Consensus 227 ~~~~~~~~~~~gG~~~l~~~l~~~l~~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~ad~vI~t~p~~~~~--~i~f 304 (498)
T 2iid_A 227 FAYEKRFDEIVDGMDKLPTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVR--LIKF 304 (498)
T ss_dssp HTTCCCEEEETTCTTHHHHHHHHHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHT--TSEE
T ss_pred cccCcceEEeCCcHHHHHHHHHHhcccccccCCEEEEEEECCCeEEEEEecCCcccceEEeCEEEECCChHHHh--heec
Confidence 0012345578899999999998655 89999999999999999999887775 48999999999999876 3457
Q ss_pred cCCCchHHHHHHhhcCCcceeEEEEEeCCCcccCCccceee-cCC-CCceeEeeeccCCCCceEEEEEechhhhHHHhcC
Q 010001 318 EPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVV-SDT-SYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKM 395 (520)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~g~~-~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 395 (520)
.|+||+...++++++++++..+|++.|++++|++.++.+.. ..+ .....++.+...+++..+|+.++.+..+..|..+
T Consensus 305 ~p~Lp~~~~~ai~~l~~~~~~kv~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~s~~~p~g~~~L~~~~~g~~a~~~~~~ 384 (498)
T 2iid_A 305 NPPLLPKKAHALRSVHYRSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGVIIAYGIGDDANFFQAL 384 (498)
T ss_dssp ESCCCHHHHHHHHHCCEECEEEEEEEESSCGGGGGTCCSSEEEESSTTCEEECCSSCCTTSCEEEEEEEEHHHHHTTTTS
T ss_pred CCCCCHHHHHHHHhCCCcceeEEEEEeCCCCccCCCccCCcccCCCCcceEEECCCCCCCCCcEEEEEeCCccHhhhhcC
Confidence 78899999999999999999999999999999875543322 222 2222233332335567788888888877788889
Q ss_pred CHHHHHHHHHHHHHHHCCCCCC-----CcEEEeccCCCCCCCCccccCCCCCCChhHHHHhcCCCCcEEEeeccccCcCC
Q 010001 396 SDEAAANFAFTQLKKILPDASS-----PIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYP 470 (520)
Q Consensus 396 ~~ee~~~~~~~~L~~~~~~~~~-----~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~ 470 (520)
+++++.+.++++|+++++.... ...+.+++|..++++.|+|.+..++......+.+++|.+||||||++++..+
T Consensus 385 ~~~~~~~~~l~~L~~~~g~~~~~~~~~~~~~~~~~W~~~p~~~G~~~~~~~~~~~~~~~~l~~p~~~l~fAGe~t~~~~- 463 (498)
T 2iid_A 385 DFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGITTFTPYQFQHFSDPLTASQGRIYFAGEYTAQAH- 463 (498)
T ss_dssp CHHHHHHHHHHHHHHHHTCCHHHHHHHEEEEEEEEGGGCTTTCSSEECCCTTHHHHHHHHHHCCBTTEEECSGGGSSSS-
T ss_pred CHHHHHHHHHHHHHHHcCCChhhhhhhcCccEEEecCCCCCCCceeeecCCcchHHHHHHHhCCCCcEEEEEcccccCC-
Confidence 9999999999999999973211 1236789999999999999877788776778888999999999999998654
Q ss_pred ccchHHHHHHHHHHHHHHHHHH
Q 010001 471 GSVHGAFSTGLMAAEDCRMRVL 492 (520)
Q Consensus 471 g~~egAi~SG~~aA~~i~~~l~ 492 (520)
|+++||+.||.+||++|++.+.
T Consensus 464 g~~~GAi~SG~raA~~i~~~l~ 485 (498)
T 2iid_A 464 GWIDSTIKSGLRAARDVNLASE 485 (498)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999998774
No 10
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=100.00 E-value=1.6e-39 Score=327.11 Aligned_cols=409 Identities=23% Similarity=0.287 Sum_probs=274.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCC---CcccccccceecCCCCCCchHHHHHHcCCCe
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF---GFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~---g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (520)
++||+|||||++||+||+.|+++|++|+|||+++++||++.+.... |..+|.|+++++.. .+..+.++++++|++.
T Consensus 1 ~~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~cipg~~~~~g~~~~~~~-~~~~~~~~~~~~g~~~ 79 (431)
T 3k7m_X 1 MYDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRK-HHPRLAAELDRYGIPT 79 (431)
T ss_dssp CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEEECSSSTTCEEESSCCCBCTT-TCHHHHHHHHHHTCCE
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecceeccCCCCceEecCCeeeCCC-CcHHHHHHHHHhCCee
Confidence 3799999999999999999999999999999999999999887665 99999999988632 1456788899999986
Q ss_pred eeecCCCcccc-ccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhcCcccccccc
Q 010001 105 YRTSGDNSVLY-DHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRFFEH 183 (520)
Q Consensus 105 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (520)
..........+ .... .+. . ....+......+...+..+......+....... ..
T Consensus 80 ~~~~~~~~~~~~~~~~-~~~---~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------------------~~ 134 (431)
T 3k7m_X 80 AAASEFTSFRHRLGPT-AVD---Q-AFPIPGSEAVAVEAATYTLLRDAHRIDLEKGLE--------------------NQ 134 (431)
T ss_dssp EECCCCCEECCBSCTT-CCS---S-SSCCCGGGHHHHHHHHHHHHHHHTTCCTTTCTT--------------------SS
T ss_pred eecCCCCcEEEEecCC-eec---C-CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCcc--------------------Cc
Confidence 55443332222 1110 000 0 001223333333333444433332221100000 00
Q ss_pred ccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCcccccccccCcccccc---------CCccccc
Q 010001 184 VSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLP---------GGHGLMV 254 (520)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~g~~~~~ 254 (520)
....++ .++.+.+. ...........+.......++.+...++...+....... +....+.
T Consensus 135 ~~~~~d-~s~~~~l~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (431)
T 3k7m_X 135 DLEDLD-IPLNEYVD----------KLDLPPVSRQFLLAWAWNMLGQPADQASALWMLQLVAAHHYSILGVVLSLDEVFS 203 (431)
T ss_dssp SCGGGC-SBHHHHHH----------HHTCCHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSCHHHHHHTCCEEET
T ss_pred chhhhc-CCHHHHHH----------hcCCCHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHhcCCccceeecchhhhcC
Confidence 000011 11222111 111122222211122233455555555443322111111 1111568
Q ss_pred cChHHHHHHHhc--cCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCchHHHHHHhhc
Q 010001 255 RGYLPVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDL 332 (520)
Q Consensus 255 ~G~~~l~~~L~~--gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~l~~~~~~~~~~~ 332 (520)
+|+..+++++.+ | +|+++++|++|+.+++++.|++.+|++++||+||+|+|+..+.. +.+.|++|....+.+..+
T Consensus 204 ~g~~~l~~~~~~~~g-~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~~~l~~--i~~~p~l~~~~~~~~~~~ 280 (431)
T 3k7m_X 204 NGSADLVDAMSQEIP-EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTWRR--IVFTPALPERRRSVIEEG 280 (431)
T ss_dssp TCTHHHHHHHHTTCS-CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCGGGGGG--SEEESCCCHHHHHHHHHC
T ss_pred CcHHHHHHHHHhhCC-ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCcchHhh--eeeCCCCCHHHHHHHHhC
Confidence 999999999974 5 99999999999999989999999998899999999999999874 467899999999999998
Q ss_pred CCcceeEEEEEeCCCcccCCccceeecCCCCceeEeeeccCCCCceEEEEEechhhhHHHhcCCHHHHHHHHHHHHHHHC
Q 010001 333 GVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL 412 (520)
Q Consensus 333 ~~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~ 412 (520)
.+...++|.+.|+.+++ .+.+ ..+......+.......+..+++.+..+.. +...+.+ .+.+.|++++
T Consensus 281 ~~~~~~kv~~~~~~~~~---~i~~--~~d~~~~~~~~~~~~~~~~~~l~~~~~g~~---~~~~~~~----~~~~~l~~~~ 348 (431)
T 3k7m_X 281 HGGQGLKILIHVRGAEA---GIEC--VGDGIFPTLYDYCEVSESERLLVAFTDSGS---FDPTDIG----AVKDAVLYYL 348 (431)
T ss_dssp CCCCEEEEEEEEESCCT---TEEE--EBSSSSSEEEEEEECSSSEEEEEEEEETTT---CCTTCHH----HHHHHHHHHC
T ss_pred CCcceEEEEEEECCCCc---CceE--cCCCCEEEEEeCcCCCCCCeEEEEEecccc---CCCCCHH----HHHHHHHHhc
Confidence 88888999999988763 2222 222222233333222245667777776654 3333332 3567788888
Q ss_pred CCCCCCcEEEeccCCCCCCCCccccCCCCCCChhHHHHhcCCCCcEEEeeccccCcCCccchHHHHHHHHHHHHHHH
Q 010001 413 PDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 489 (520)
Q Consensus 413 ~~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~ 489 (520)
|... +..+..++|..++++.|+|++..++......+.+++|.++|||||+.++..++||||||+.||.+||++|+.
T Consensus 349 ~~~~-~~~~~~~~W~~d~~~~G~~~~~~~g~~~~~~~~l~~p~g~~~fAGe~t~~~~~g~~~GA~~sg~raa~~i~~ 424 (431)
T 3k7m_X 349 PEVE-VLGIDYHDWIADPLFEGPWVAPRVGQFSRVHKELGEPAGRIHFVGSDVSLEFPGYIEGALETAECAVNAILH 424 (431)
T ss_dssp TTCE-EEEEECCCTTTCTTTSSSSCCCCTTTTTTSSGGGGSCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHH
T ss_pred CCCC-ccEeEecccCCCCCCCCCCCCcCCCCCcccHHHHhCCCCcEEEEehhhhccCCeEehHHHHHHHHHHHHHHh
Confidence 8765 778888999999999999999889988788899999999999999999987889999999999999999875
No 11
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=100.00 E-value=9.9e-40 Score=332.60 Aligned_cols=416 Identities=18% Similarity=0.234 Sum_probs=271.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCC------CcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDAS------FKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRL 100 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G------~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~l 100 (520)
+++||+|||||++||+||++|+++| ++|+|||+++++||+++|...+|+.+|.|++++.+ .+..+.++++++
T Consensus 4 ~~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~--~~~~~~~l~~~l 81 (470)
T 3i6d_A 4 GKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPDSFLE--RKKSAPQLVKDL 81 (470)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEECCTTCCEESSCCCEET--TCTHHHHHHHHT
T ss_pred CCCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEeccCCEEeccChhhhhh--CCHHHHHHHHHc
Confidence 4589999999999999999999999 99999999999999999988899999999998874 356789999999
Q ss_pred CCCeeeec--CCCccccccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhcCccc
Q 010001 101 GLPLYRTS--GDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPEL 178 (520)
Q Consensus 101 g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (520)
|++..... ......+.++. ...+........|..........+ ... ...... ....+...
T Consensus 82 gl~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~p~~~~~~~~~~~---~~~----------~~~~~~-~~~~~~~~--- 143 (470)
T 3i6d_A 82 GLEHLLVNNATGQSYVLVNRT-LHPMPKGAVMGIPTKIAPFVSTGL---FSL----------SGKARA-AMDFILPA--- 143 (470)
T ss_dssp TCCTTEEECCCCCEEEECSSC-EEECCC----------------------------------CCSHHH-HHHHHSCC---
T ss_pred CCcceeecCCCCccEEEECCE-EEECCCCcccCCcCchHHhhccCc---CCH----------HHHHHH-hcCcccCC---
Confidence 99743221 11122221111 000000000000111000000000 000 000000 00000000
Q ss_pred cccccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-hhhhcCCcccccccccCccc---------cc--
Q 010001 179 RFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEE---------LL-- 246 (520)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~-- 246 (520)
.......++.+++ ...++.+..+.++.++ .+.++.+...++........ ..
T Consensus 144 ------~~~~~~~s~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 206 (470)
T 3i6d_A 144 ------SKTKDDQSLGEFF-----------RRRVGDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILG 206 (470)
T ss_dssp ------CSSSSCCBHHHHH-----------HHHSCHHHHHHTHHHHHHHTTCSCTTTBBHHHHCGGGCC-----------
T ss_pred ------CCCCCCcCHHHHH-----------HHhcCHHHHHHhccchhcEEecCCHHHhhHHHHHHHHHHHHHhcCcHHHH
Confidence 0001111222211 2235556666665554 55777777777654322110 00
Q ss_pred -----------------cCCccccccChHHHHHHHhccC---CeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecC
Q 010001 247 -----------------PGGHGLMVRGYLPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP 306 (520)
Q Consensus 247 -----------------~~g~~~~~~G~~~l~~~L~~gv---~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p 306 (520)
.+....+.+|++.++++|++.+ +|+++++|++|+.+++++.|++.+|+++.||+||+|+|
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a~p 286 (470)
T 3i6d_A 207 MKKTRPQGSGQQLTAKKQGQFQTLSTGLQTLVEEIEKQLKLTKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAP 286 (470)
T ss_dssp --------------------EEEETTCTHHHHHHHHHTCCSEEEECSCCEEEEEECSSSEEEEESSSCEEEESEEEECSC
T ss_pred HHhhccccccccccccCCceEEEeCChHHHHHHHHHHhcCCCEEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEECCC
Confidence 1245578899999999998765 79999999999999999999999998899999999999
Q ss_pred hhhhhcCcccccCCCchHHHHHHhhcCCcceeEEEEEeCCCcccCC-ccceeecCCCCc---e-eEe----eeccCCCCc
Q 010001 307 LGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV-EFLGVVSDTSYG---C-SYF----LNLHKATGH 377 (520)
Q Consensus 307 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~-~~~g~~~~~~~~---~-~~~----~~~~~~~~~ 377 (520)
++.+.+++.. ++ ..+.+..+++.+..++.+.|++++|+.. ..+|++.+.... . ..+ ++...+++.
T Consensus 287 ~~~~~~l~~~--~~----~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~ 360 (470)
T 3i6d_A 287 HKAAAGMLSE--LP----AISHLKNMHSTSVANVALGFPEGSVQMEHEGTGFVISRNSDFAITACTWTNKKWPHAAPEGK 360 (470)
T ss_dssp HHHHHHHTTT--ST----THHHHHTCEEEEEEEEEEEESSTTCCCSSCSSEEEECSTTCCSEEEEEEHHHHCGGGSCTTC
T ss_pred HHHHHHHcCC--ch----hhHHHhcCCCCceEEEEEEECchhcCCCCCCeEEEccCCCCCCceEEEEEcCcCCCcCCCCC
Confidence 9998764322 22 2567888999999999999999999753 345665543221 1 111 122345567
Q ss_pred eEEEEEechhhhHHHhcCCHHHHHHHHHHHHHHHCCCCCCCcEEEeccCCCCCCCCccccCCCCCCChhHHHHhcCCCCc
Q 010001 378 CVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDN 457 (520)
Q Consensus 378 ~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~ 457 (520)
.++.+++.+.....+...+++++.+.++++|+++++...+|..+.+++|.. ..+.|............+.+.++.+|
T Consensus 361 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~p~~~~~~~w~~---a~p~~~~g~~~~~~~~~~~l~~~~~~ 437 (470)
T 3i6d_A 361 TLLRAYVGKAGDESIVDLSDNDIINIVLEDLKKVMNINGEPEMTCVTRWHE---SMPQYHVGHKQRIKELREALASAYPG 437 (470)
T ss_dssp EEEEEEECCSSCCGGGTSCHHHHHHHHHHHHGGGSCCCSCCSEEEEEEEEE---EEEECBTTHHHHHHHHHHHHHHHSTT
T ss_pred EEEEEEECCCCCccccCCCHHHHHHHHHHHHHHHhCCCCCceEEEEEEcCC---ccCCCCCCHHHHHHHHHHHHHhhCCC
Confidence 778888777666677889999999999999999998877888899999954 22333211111223455567778899
Q ss_pred EEEeeccccCcCCccchHHHHHHHHHHHHHHHHH
Q 010001 458 LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 491 (520)
Q Consensus 458 l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~~l 491 (520)
|++||+++.+ .++++|+.||.++|++|++.|
T Consensus 438 l~~aG~~~~g---~gv~~a~~sG~~aA~~i~~~l 468 (470)
T 3i6d_A 438 VYMTGASFEG---VGIPDCIDQGKAAVSDALTYL 468 (470)
T ss_dssp EEECSTTTSC---CSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeecCCC---CCHHHHHHHHHHHHHHHHHHh
Confidence 9999998764 479999999999999999876
No 12
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=100.00 E-value=4.9e-38 Score=321.18 Aligned_cols=424 Identities=20% Similarity=0.246 Sum_probs=271.4
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCC-----------------CCcccccccceecCC
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS-----------------FGFPVDLGASWLHGV 87 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~-----------------~g~~~d~G~~~~~~~ 87 (520)
.++++||+|||||++||+||+.|+++|++|+|||+++++||++++... +|..+|.|+++++.
T Consensus 8 ~~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~- 86 (489)
T 2jae_A 8 VKGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLSGETQKCTFSEGHFYNVGATRIPQ- 86 (489)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEETTCEEECTTSCEEECCCCTTCEEESSCCCEET-
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCceeeeccCcccccccchhhhhcccCCCcCCcchhhccc-
Confidence 345789999999999999999999999999999999999999988654 57788999998863
Q ss_pred CCCCchHHHHHHcCCCeeeecCC--Ccccc-ccCccceeeecCCCCccCHH-HHHHHHHHHHHHHHHHHHhhhcCCC---
Q 010001 88 CQENPLAPVISRLGLPLYRTSGD--NSVLY-DHDLESYALFDMDGNQVPQE-LVTKVGEAFESILKETDKVREEHDE--- 160 (520)
Q Consensus 88 ~~~~~~~~l~~~lg~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--- 160 (520)
.+ .+.++++++|++....... ....+ .++. . ..+...... ........+..++....... ....
T Consensus 87 -~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~-----~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~ 157 (489)
T 2jae_A 87 -SH-ITLDYCRELGVEIQGFGNQNANTFVNYQSDT-S-----LSGQSVTYRAAKADTFGYMSELLKKATDQG-ALDQVLS 157 (489)
T ss_dssp -TS-THHHHHHHHTCCEEEECCCCTTSEEECCCSS-T-----TTTCCEEHHHHHHHHHHHHHHHHHHHHHHT-TTTTTSC
T ss_pred -HH-HHHHHHHHcCCceEEccccCCCceEEecCCc-c-----cCCccccHHHHhhhhhccHHHHHHHHHhcc-ccccccc
Confidence 23 8899999999986543321 11111 1110 0 001111111 11111111111111111100 0000
Q ss_pred ---CCcHHHHHHHHHhcCccccccccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhh-hhcC-----C
Q 010001 161 ---DMSIQRAISIVFDRRPELRFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRMEG-WFAA-----D 231 (520)
Q Consensus 161 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~ 231 (520)
+.++.+++.. +.......+++. .....++.. +... +++. +
T Consensus 158 ~~~~~~~~~~l~~-~~~~~~~~~~~~-------~~~~~~~~~-----------------------~~~~~~~~~~~~~~~ 206 (489)
T 2jae_A 158 REDKDALSEFLSD-FGDLSDDGRYLG-------SSRRGYDSE-----------------------PGAGLNFGTEKKPFA 206 (489)
T ss_dssp HHHHHHHHHHHHH-HTTCCTTSCCCC-------CGGGCEEEC-----------------------CCBTTCCCEECCCCC
T ss_pred hhhHHHHHHHHHH-hhhhhhcccccc-------ccchhhccC-----------------------CCcccccCCCCCCcC
Confidence 1133333332 111000000000 000000000 0000 0000 0
Q ss_pred cccccccccCc------cccccCCccccccChHHHHHHHhcc---CCeecCceeEEEEEeCCeEEEEEcCC---cEEEcC
Q 010001 232 AETISLKSWDK------EELLPGGHGLMVRGYLPVINTLAKG---LDIRLGHRVTKITRHYIGVKVTVEGG---KTFVAD 299 (520)
Q Consensus 232 ~~~~~~~~~~~------~~~~~~g~~~~~~G~~~l~~~L~~g---v~i~~~~~V~~I~~~~~~v~V~~~~g---~~~~ad 299 (520)
...+....+.. .....++...+.+|++.++++|++. .+|++|++|++|+.++++|.|++.+| +++.||
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~~~~ad 286 (489)
T 2jae_A 207 MQEVIRSGIGRNFSFDFGYDQAMMMFTPVGGMDRIYYAFQDRIGTDNIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITAD 286 (489)
T ss_dssp HHHHHHHTTTTTGGGGGCTTTSSSEEEETTCTTHHHHHHHHHHCGGGEETTCEEEEEEEETTEEEEEEEETTEEEEEEES
T ss_pred HHHHhhhhHHHHHhhhhccccCccEEeecCCHHHHHHHHHHhcCCCeEEECCEEEEEEEcCCeEEEEEecCCeEEEEECC
Confidence 00000000000 0111245667899999999999863 57999999999999999999988876 689999
Q ss_pred EEEEecChhhhhcCcccccCCCchHHHHHHhhcCCcceeEEEEEeCCCcccCC-ccceee-cCCCCceeEeeeccC-CCC
Q 010001 300 AVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV-EFLGVV-SDTSYGCSYFLNLHK-ATG 376 (520)
Q Consensus 300 ~VI~a~p~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~-~~~g~~-~~~~~~~~~~~~~~~-~~~ 376 (520)
+||+|+|+..+..+. + ++|+...+.+.++++.+..++++.|++++|++. .++|.+ ..+......+..... +..
T Consensus 287 ~vI~a~p~~~l~~l~--~--~l~~~~~~~l~~~~~~~~~kv~l~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~s~~~~~~ 362 (489)
T 2jae_A 287 YAICTIPPHLVGRLQ--N--NLPGDVLTALKAAKPSSSGKLGIEYSRRWWETEDRIYGGASNTDKDISQIMFPYDHYNSD 362 (489)
T ss_dssp EEEECSCHHHHTTSE--E--CCCHHHHHHHHTEECCCEEEEEEEESSCHHHHTTCCCSCEEEESSTTCEEECCSSSTTSS
T ss_pred EEEECCCHHHHHhCc--c--CCCHHHHHHHHhCCCccceEEEEEeCCCCccCCCCcccccccCCCCceEEEeCCCCCCCC
Confidence 999999999887542 2 688888889999999999999999999999764 455432 222222222222211 112
Q ss_pred ceEEE-EEechhhhHHHhcCCHHHHHHHHHHHHHHHCCC-C-CCCcEEEeccCCCCCCCCccccCCC------CCCChhH
Q 010001 377 HCVLV-YMPAGQLARDIEKMSDEAAANFAFTQLKKILPD-A-SSPIQYLVSHWGTDANSLGSYSYDT------VGKSHDL 447 (520)
Q Consensus 377 ~~~l~-~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~~~-~-~~~~~~~~~~w~~~~~~~g~~~~~~------~~~~~~~ 447 (520)
..+++ .++.+.....|..++++++++.++++|++++|. . .++.....++|..++++.|+|.... ++.....
T Consensus 363 ~~~l~~~~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~W~~~~~~~G~~~~~~~~~~~~~~~~~~~ 442 (489)
T 2jae_A 363 RGVVVAYYSSGKRQEAFESLTHRQRLAKAIAEGSEIHGEKYTRDISSSFSGSWRRTKYSESAWANWAGSGGSHGGAATPE 442 (489)
T ss_dssp CEEEEEEEEETHHHHHHHTSCHHHHHHHHHHHHHHHHCGGGGSSEEEEEEEEGGGSTTTSCSSCEETTC-------CCHH
T ss_pred CCEEEEEeeCCchhhhhhcCCHHHHHHHHHHHHHHHcCcchhhhccccEEEEcCCCCCCCCcchhcccccCCCcccchhh
Confidence 34444 577788888899999999999999999999986 3 5566777889999999999887654 6666677
Q ss_pred HHHhcCCCCcEEEeeccccCcCCccchHHHHHHHHHHHHHHHHHHHH
Q 010001 448 YERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 494 (520)
Q Consensus 448 ~~~~~~p~~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~~l~~~ 494 (520)
.+.+++|.+||||||++++. +.++++||+.||.+||++|+..|..+
T Consensus 443 ~~~l~~~~~~l~faG~~~~~-~~~~v~gAi~sg~~aA~~i~~~l~~~ 488 (489)
T 2jae_A 443 YEKLLEPVDKIYFAGDHLSN-AIAWQHGALTSARDVVTHIHERVAQE 488 (489)
T ss_dssp HHHHTSCBTTEEECSGGGBS-STTSHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhCCCCcEEEeEHHhcc-CccHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88889999999999999874 44899999999999999999887653
No 13
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=100.00 E-value=4.7e-39 Score=327.99 Aligned_cols=403 Identities=20% Similarity=0.238 Sum_probs=261.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcCCCee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY 105 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~ 105 (520)
..++||+|||||++||+||+.|+++|++|+|+|+++++||+++|...+|+.+|.|++++.+ .+..+.++++++|++..
T Consensus 14 ~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~~~g~~~~~~--~~~~~~~~~~~~gl~~~ 91 (478)
T 2ivd_A 14 TTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLD--REPATRALAAALNLEGR 91 (478)
T ss_dssp ---CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEET--TCHHHHHHHHHTTCGGG
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeeccCCeeeecChhhhhh--hhHHHHHHHHHcCCcce
Confidence 3568999999999999999999999999999999999999999998999999999999874 35678999999999632
Q ss_pred eec----CCCccccccCccceeeecCCCCccCHHHHHHHHHH---HHHHHHHHHHhhh---cCCCCCcHHHHHHHHHhcC
Q 010001 106 RTS----GDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEA---FESILKETDKVRE---EHDEDMSIQRAISIVFDRR 175 (520)
Q Consensus 106 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 175 (520)
... ......+.++. . ..++......+... +............ ....+.++.+++
T Consensus 92 ~~~~~~~~~~~~~~~~g~-~--------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l------- 155 (478)
T 2ivd_A 92 IRAADPAAKRRYVYTRGR-L--------RSVPASPPAFLASDILPLGARLRVAGELFSRRAPEGVDESLAAFG------- 155 (478)
T ss_dssp EECSCSSCCCEEEEETTE-E--------EECCCSHHHHHTCSSSCHHHHHHHHGGGGCCCCCTTCCCBHHHHH-------
T ss_pred eeecCccccceEEEECCE-E--------EECCCCHHHhccCCCCCHHHHHHHhhhhhcCCCCCCCCCCHHHHH-------
Confidence 111 11111111110 0 01111110000000 0000000000000 001122333332
Q ss_pred ccccccccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-hhhhcCCcccccccccCc------------
Q 010001 176 PELRFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDK------------ 242 (520)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------ 242 (520)
.+.+++++.+.++.++ ...++.++..+++..+..
T Consensus 156 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 202 (478)
T 2ivd_A 156 ---------------------------------RRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSL 202 (478)
T ss_dssp ---------------------------------HHHTCHHHHHHTHHHHHHHHHCCCTTTBBHHHHCHHHHHHHHHHSSH
T ss_pred ---------------------------------HHhhCHHHHHHHHHHHhceeecCCHHHhhHHHHhHHHHHHHHhcCcH
Confidence 1234444555444443 344555555554332110
Q ss_pred --------------------cccccCCccccccChHHHHHHHhc--cCCeecCceeEEEEEeCCeEEEEE---cCCcEEE
Q 010001 243 --------------------EELLPGGHGLMVRGYLPVINTLAK--GLDIRLGHRVTKITRHYIGVKVTV---EGGKTFV 297 (520)
Q Consensus 243 --------------------~~~~~~g~~~~~~G~~~l~~~L~~--gv~i~~~~~V~~I~~~~~~v~V~~---~~g~~~~ 297 (520)
.+...++..++.+|+..++++|++ |++|+++++|++|+.+++++.|++ .+|+++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~lg~~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~ 282 (478)
T 2ivd_A 203 ILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLIDALAASLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELS 282 (478)
T ss_dssp HHHHHHHHHHHTCC----CCSCCCCCCEEEETTCTHHHHHHHHHHHGGGEESSEEEEEEECC--CCEEEEEETTEEEEEE
T ss_pred HHHHHHhhhccccccCcccccccccccEEEECCCHHHHHHHHHHHhhhhEEcCCEEEEEEecCCeEEEEEeecCCCceEE
Confidence 000115677899999999999975 569999999999999888888887 6787899
Q ss_pred cCEEEEecChhhhhcCcccccCCCchHHHHHHhhcCCcceeEEEEEeCCCcccCCccceeecCC---CCce-eEeeec--
Q 010001 298 ADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDT---SYGC-SYFLNL-- 371 (520)
Q Consensus 298 ad~VI~a~p~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~---~~~~-~~~~~~-- 371 (520)
||+||+|+|+..+..++ |.+|+...+.+.++.+.+..++++.|++++|+.....+.+.+. .... ..+...
T Consensus 283 ad~vV~a~~~~~~~~ll----~~l~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 358 (478)
T 2ivd_A 283 VAQVVLAAPAHATAKLL----RPLDDALAALVAGIAYAPIAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLGAIHASTTF 358 (478)
T ss_dssp CSEEEECSCHHHHHHHH----TTTCHHHHHHHHTCCBCCEEEEEEEECTTSSCCCCSSEEECCGGGCCSCCEEEEHHHHC
T ss_pred cCEEEECCCHHHHHHHh----hccCHHHHHHHhcCCCCcEEEEEEEEccccCCCCCceEEEecCCCCCceEEEEEEcccC
Confidence 99999999999876533 5678888888999999999999999999988763233444321 1111 222211
Q ss_pred --cCCCCceEEEEEechhhhHHHhcCCHHHHHHHHHHHHHHHCCCCCCCcEEEeccCCCCCCCCccccCCCCCCCh---h
Q 010001 372 --HKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSH---D 446 (520)
Q Consensus 372 --~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~---~ 446 (520)
..+++..++++++.+.....+...+++++.+.++++|++++|....|....+++|... .+.| .++... .
T Consensus 359 ~~~~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~w~~~---~p~~---~~g~~~~~~~ 432 (478)
T 2ivd_A 359 PFRAEGGRVLYSCMVGGARQPGLVEQDEDALAALAREELKALAGVTARPSFTRVFRWPLG---IPQY---NLGHLERVAA 432 (478)
T ss_dssp GGGBSTTCEEEEEEEECTTCGGGGGSCHHHHHHHHHHHHHHHHCCCSCCSEEEEEEESSC---CBCC---BTTHHHHHHH
T ss_pred CCcCCCCCEEEEEEeCCcCCccccCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEEECCCc---ccCC---CcCHHHHHHH
Confidence 1245667778887776666677889999999999999999987777888888999652 1112 233311 1
Q ss_pred HHHHhcCCCCcEEEeeccccCcCCccchHHHHHHHHHHHHHHHHHHH
Q 010001 447 LYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 493 (520)
Q Consensus 447 ~~~~~~~p~~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~~l~~ 493 (520)
..+.+.+ .+|||+||+++.+ ++++||+.||.+||++|+..+.+
T Consensus 433 ~~~~~~~-~~~l~~aG~~~~g---~gv~gA~~SG~~aA~~i~~~l~~ 475 (478)
T 2ivd_A 433 IDAALQR-LPGLHLIGNAYKG---VGLNDCIRNAAQLADALVAGNTS 475 (478)
T ss_dssp HHHHHHT-STTEEECSTTTSC---CSHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHhh-CCCEEEEccCCCC---CCHHHHHHHHHHHHHHHHHhhcc
Confidence 2223333 6899999999743 47999999999999998776543
No 14
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=100.00 E-value=2.7e-38 Score=322.03 Aligned_cols=405 Identities=19% Similarity=0.234 Sum_probs=269.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCC--CcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcCCCee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY 105 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G--~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~ 105 (520)
++||+|||||++||+||++|+++| ++|+|||+++++||+++|...+|+.+|.|++++.. ....+.++++++|++..
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~--~~~~~~~l~~~lg~~~~ 81 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYVA--RKHILTDLIEAIGLGEK 81 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEECSTTCCEESSCCCEET--TSTHHHHHHHHTTCGGG
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEeeCCEEEecCchhhhc--ccHHHHHHHHHcCCcce
Confidence 589999999999999999999999 99999999999999999998899999999998864 35678999999999743
Q ss_pred eec--CCCccccccCccceeeecCCCCccCHHHHHHHH----HHHHH-HHHHHHHhhhc----CCCCCcHHHHHHHHHhc
Q 010001 106 RTS--GDNSVLYDHDLESYALFDMDGNQVPQELVTKVG----EAFES-ILKETDKVREE----HDEDMSIQRAISIVFDR 174 (520)
Q Consensus 106 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 174 (520)
... ......+.++. ...+........|........ ....+ ........... ...+.++.+++
T Consensus 82 ~~~~~~~~~~~~~~g~-~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l------ 154 (475)
T 3lov_A 82 LVRNNTSQAFILDTGG-LHPIPKGAVMGIPTDLDLFRQTTLLTEEEKQEVADLLLHPSDSLRIPEQDIPLGEYL------ 154 (475)
T ss_dssp EEECCCCCEEEEETTE-EEECCSSEETTEESCHHHHTTCSSSCHHHHHHHHHHHHSCCTTCCCCSSCCBHHHHH------
T ss_pred EeecCCCceEEEECCE-EEECCCcccccCcCchHHHhhccCCChhHHHHhhCcccCCcccccCCCCCcCHHHHH------
Confidence 321 22222222211 000000000000100000000 00000 00000000000 12233444433
Q ss_pred CccccccccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-hhhhcCCcccccccccCccc---------
Q 010001 175 RPELRFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEE--------- 244 (520)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------- 244 (520)
...++.++.+.++.++ .+.++.++..+++.......
T Consensus 155 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~ 200 (475)
T 3lov_A 155 ----------------------------------RPRLGDALVEKLIEPLLSGIYAGNIDQMSTFATYPQFVANEQKAGS 200 (475)
T ss_dssp ----------------------------------HHHHCHHHHHHTHHHHHHGGGCCCTTTSBSTTTCHHHHHHHHHHSS
T ss_pred ----------------------------------HHHhCHHHHHHHHHHHhceeecCChHHcCHHHHHHHHHHHHHhcCc
Confidence 2244556666666554 56777777777655322110
Q ss_pred c----------------------ccCCccccccChHHHHHHHhccC---CeecCceeEEEEEeCCeEEEEEcCCcEEEcC
Q 010001 245 L----------------------LPGGHGLMVRGYLPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVAD 299 (520)
Q Consensus 245 ~----------------------~~~g~~~~~~G~~~l~~~L~~gv---~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad 299 (520)
. ..+.+..+.+|+..++++|++.+ +|+++++|++|+.++++|.|++.+| ++.||
T Consensus 201 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~ad 279 (475)
T 3lov_A 201 LFEGMRLMRPLDQLPQTPQTTIKATGQFLSLETGLESLIERLEEVLERSEIRLETPLLAISREDGRYRLKTDHG-PEYAD 279 (475)
T ss_dssp HHHHHHHTCC--------------CCSEEEETTCHHHHHHHHHHHCSSCEEESSCCCCEEEEETTEEEEECTTC-CEEES
T ss_pred HHHHHHHhcccccccccccccccCCCcEEeeCChHHHHHHHHHhhccCCEEEcCCeeeEEEEeCCEEEEEECCC-eEECC
Confidence 0 02345678999999999998654 8999999999999999999999999 89999
Q ss_pred EEEEecChhhhhcCcccccCCCchHHHHHHhhcCCcceeEEEEEeCCCcccCCccceeecCCCCce---e-Eee----ec
Q 010001 300 AVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGC---S-YFL----NL 371 (520)
Q Consensus 300 ~VI~a~p~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~~---~-~~~----~~ 371 (520)
+||+|+|++.+.+++.. +++ +.+..+++.+..++.+.|+.+++.....+|++.+..... . .+. +.
T Consensus 280 ~vV~a~p~~~~~~ll~~--~~~-----~~~~~~~~~~~~~v~l~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~s~~~~~ 352 (475)
T 3lov_A 280 YVLLTIPHPQVVQLLPD--AHL-----PELEQLTTHSTATVTMIFDQQQSLPIEGTGFVVNRRAPYSITACTAIDQKWNH 352 (475)
T ss_dssp EEEECSCHHHHHHHCTT--SCC-----HHHHTCCEEEEEEEEEEEECCSSCSSSSSEEEECTTSSCSEEEEEEHHHHCTT
T ss_pred EEEECCCHHHHHHHcCc--cCH-----HHHhcCCCCeEEEEEEEECCcCCCCCCCEEEEecCCCCCceEEEEEEcccCCC
Confidence 99999999998765322 222 677889999999999999988833333456655432211 1 111 11
Q ss_pred cCCCCceEEEEEechhhhHHHhcCCHHHHHHHHHHHHHHHCCCCCCCcEEEeccCCCCCCCCccccCCCCCC---ChhHH
Q 010001 372 HKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGK---SHDLY 448 (520)
Q Consensus 372 ~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~---~~~~~ 448 (520)
..++ ...+.+++.+.....+...+++++.+.++++|+++++...+|..+.+++|... .+.|. +|. .....
T Consensus 353 ~~p~-~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~g~~~~p~~~~v~~w~~a---~p~~~---~g~~~~~~~~~ 425 (475)
T 3lov_A 353 SAPD-HTVLRAFVGRPGNDHLVHESDEVLQQAVLQDLEKICGRTLEPKQVIISRLMDG---LPAYT---VGHADRIQRVR 425 (475)
T ss_dssp TCTT-EEEEEEEECBTTBCGGGGSCHHHHHHHHHHHHHHHHSSCCCCSEEEEEEEEEE---EECCC---TTHHHHHHHHH
T ss_pred CCCC-cEEEEEEeCCCCCCcccCCCHHHHHHHHHHHHHHHhCCCCCCeEEEEEEcccC---CCCCC---CChHHHHHHHH
Confidence 2233 56677777666666778899999999999999999987778889999999652 22222 332 23345
Q ss_pred HHhcCCCCcEEEeeccccCcCCccchHHHHHHHHHHHHHHHHHHH
Q 010001 449 ERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 493 (520)
Q Consensus 449 ~~~~~p~~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~~l~~ 493 (520)
+.+.++.+|||+||+++.+ .++++|+.||.++|++|++.+..
T Consensus 426 ~~l~~~~~~l~~aG~~~~g---~g~~~a~~sG~~aA~~i~~~l~~ 467 (475)
T 3lov_A 426 EEVLAQYPGIYLAGLAYDG---VGLPDCVASAKTMIESIELEQSH 467 (475)
T ss_dssp HHHHHHSTTEEECSTTTSC---SSHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHhhCCCEEEEccCCCC---CCHHHHHHHHHHHHHHHHHHhhc
Confidence 5566788999999998764 47999999999999998876543
No 15
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=100.00 E-value=4.1e-38 Score=323.15 Aligned_cols=405 Identities=18% Similarity=0.218 Sum_probs=260.5
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcCCCe
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (520)
|.+++||+|||||++||+||+.|+++|++|+|+|+++++||++++...+|+.+|.|++++++ .+..+.++++++|++.
T Consensus 10 ~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~--~~~~~~~~~~~lgl~~ 87 (504)
T 1sez_A 10 HSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTE--SEGDVTFLIDSLGLRE 87 (504)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCC--CSHHHHHHHHHTTCGG
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCeEEecCCccccc--CcHHHHHHHHHcCCcc
Confidence 34578999999999999999999999999999999999999999988899999999998863 3457899999999964
Q ss_pred eeecC---CCccccccCccceeeecCCCCccCHHHHHHHH-------HHHHHHHHHHHHhhh----cCCCCCcHHHHHHH
Q 010001 105 YRTSG---DNSVLYDHDLESYALFDMDGNQVPQELVTKVG-------EAFESILKETDKVRE----EHDEDMSIQRAISI 170 (520)
Q Consensus 105 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 170 (520)
..... .....+.++. ...++........ ..+..+......... ....+.++.+++
T Consensus 88 ~~~~~~~~~~~~~~~~g~---------~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l-- 156 (504)
T 1sez_A 88 KQQFPLSQNKRYIARNGT---------PVLLPSNPIDLIKSNFLSTGSKLQMLLEPILWKNKKLSQVSDSHESVSGFF-- 156 (504)
T ss_dssp GEECCSSCCCEEEESSSS---------EEECCSSHHHHHHSSSSCHHHHHHHHTHHHHC----------CCCBHHHHH--
T ss_pred cceeccCCCceEEEECCe---------EEECCCCHHHHhccccCCHHHHHHHhHhhhccCcccccccCCCCccHHHHH--
Confidence 32111 1111111110 0111111100000 000000000000000 001122333332
Q ss_pred HHhcCccccccccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-hhhhcCCcccccccccCc-------
Q 010001 171 VFDRRPELRFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDK------- 242 (520)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------- 242 (520)
.+.++++..+.++.++ .+.++.++..+++.....
T Consensus 157 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 198 (504)
T 1sez_A 157 --------------------------------------QRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEK 198 (504)
T ss_dssp --------------------------------------HHHHCHHHHHTTHHHHHHHHHSCCGGGSBHHHHCHHHHHHHH
T ss_pred --------------------------------------HHHcCHHHHHHHHHHHHccccCCChHHhhHHHHhHHHHHHHH
Confidence 2234555555555544 445555665554432110
Q ss_pred -----------------------------cccccCCccccccChHHHHHHHhcc---CCeecCceeEEEEEeCCe-----
Q 010001 243 -----------------------------EELLPGGHGLMVRGYLPVINTLAKG---LDIRLGHRVTKITRHYIG----- 285 (520)
Q Consensus 243 -----------------------------~~~~~~g~~~~~~G~~~l~~~L~~g---v~i~~~~~V~~I~~~~~~----- 285 (520)
......+..++.+|++.++++|++. .+|++|++|++|+.++++
T Consensus 199 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~~~~ 278 (504)
T 1sez_A 199 RFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAICKDLREDELRLNSRVLELSCSCTEDSAID 278 (504)
T ss_dssp HTSCHHHHHHHHTTC----------CCCSCCSTTCSCBEETTCTHHHHHHHHTTSCTTTEETTCCEEEEEEECSSSSSSC
T ss_pred HhCCHHHHHHHhhhcccccccccccchhhccccCCceEeeCcHHHHHHHHHHhhcccceEEcCCeEEEEEecCCCCcccc
Confidence 0001235677899999999999863 579999999999998877
Q ss_pred -EEEEEc--CC---cEEEcCEEEEecChhhhhcCccc-ccCCCchHHHHHHhhcCCcceeEEEEEeCCCcccCC-cccee
Q 010001 286 -VKVTVE--GG---KTFVADAVVVAVPLGVLKARTIK-FEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV-EFLGV 357 (520)
Q Consensus 286 -v~V~~~--~g---~~~~ad~VI~a~p~~~l~~l~~~-~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~-~~~g~ 357 (520)
+.|++. +| +++.||+||+|+|++.+.+++.. ..+++++.. +..+.+.+..++++.|+.++|++. ..+++
T Consensus 279 ~~~v~~~~~~g~~~~~~~ad~VI~a~p~~~l~~ll~~~~~~~~~~~~---l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~ 355 (504)
T 1sez_A 279 SWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNF---IPEVDYVPLSVVITTFKRENVKYPLEGFGV 355 (504)
T ss_dssp EEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTT---SCCCCEEEEEEEEEEEEGGGBSSCCCSSEE
T ss_pred eEEEEEcCCCCccceeEECCEEEECCCHHHHHHHhhcccCCcccHHH---HhcCCCCceEEEEEEEchhhcCCCCCceEE
Confidence 766654 45 57899999999999999876531 112232211 566777788999999999988743 22444
Q ss_pred ecCCCC-------ceeE----eeeccCCCCceEEEEEechhhhHHHhcCCHHHHHHHHHHHHHHHCCCCCCCcEEEeccC
Q 010001 358 VSDTSY-------GCSY----FLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHW 426 (520)
Q Consensus 358 ~~~~~~-------~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~w 426 (520)
+.++.. .... .++...+++..++++++.+.....|..++++++++.++++|+++++...+|..+.+.+|
T Consensus 356 l~~~~~~~~g~~~~~~~~~s~~~~~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~g~~~~p~~~~~~~w 435 (504)
T 1sez_A 356 LVPSKEQQHGLKTLGTLFSSMMFPDRAPNNVYLYTTFVGGSRNRELAKASRTELKEIVTSDLKQLLGAEGEPTYVNHLYW 435 (504)
T ss_dssp ECCGGGGGGTCCSSEEEEHHHHCGGGSCTTEEEEEEEEESTTCGGGTTCCHHHHHHHHHHHHHHHHCBCSCCSSEEEEEE
T ss_pred EcCCCCCCCCCccceEEeeccccCCcCCCCCEEEEEEeCCCCcccccCCCHHHHHHHHHHHHHHHhCCCCCCeEEEEeEC
Confidence 443211 1111 12223356677788888877777788899999999999999999987667888889999
Q ss_pred CCCCCCCccccCCCCCCCh--hHHHHhcCCCCcEEEeeccccCcCCccchHHHHHHHHHHHHHHHHHH
Q 010001 427 GTDANSLGSYSYDTVGKSH--DLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 492 (520)
Q Consensus 427 ~~~~~~~g~~~~~~~~~~~--~~~~~~~~p~~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~~l~ 492 (520)
... ++.| .++... ...+...+|++|||+||+++.+ .+++||+.||.+||++|++.+.
T Consensus 436 ~~~---~p~~---~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g---~~v~gai~sG~~aA~~il~~l~ 494 (504)
T 1sez_A 436 SKA---FPLY---GHNYDSVLDAIDKMEKNLPGLFYAGNHRGG---LSVGKALSSGCNAADLVISYLE 494 (504)
T ss_dssp EEE---EECC---CTTHHHHHHHHHHHHHHSTTEEECCSSSSC---SSHHHHHHHHHHHHHHHHHHHS
T ss_pred CCC---CCcc---CcCHHHHHHHHHHHHHhCCCEEEEeecCCC---CCHHHHHHHHHHHHHHHHHHHh
Confidence 542 1112 233211 1223455678999999999863 5899999999999999988764
No 16
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=100.00 E-value=3.1e-36 Score=302.57 Aligned_cols=396 Identities=16% Similarity=0.118 Sum_probs=251.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcCCCeeeec
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS 108 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~ 108 (520)
+||+|||||++||+||++|+++|++|+|||+++++||++++...+|+.+|.|++++........+.++++++|++.....
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~ 80 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKGFQLSSGAFHMLPNGPGGPLACFLKEVEASVNIVR 80 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSSEEEETTEEEESSSCSCBTTGGGSHHHHHHHHTTCCCCEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCceeeeccCCcEEcCCCceEecCCCccHHHHHHHHhCCCceEEe
Confidence 59999999999999999999999999999999999999999989999999998665433344578999999998643222
Q ss_pred CCCc-cccc--cCc------cceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhcCcccc
Q 010001 109 GDNS-VLYD--HDL------ESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELR 179 (520)
Q Consensus 109 ~~~~-~~~~--~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (520)
.... ..+. +.. .....+......+..... .++.............+.++.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~l~~--------- 144 (425)
T 3ka7_A 81 SEMTTVRVPLKKGNPDYVKGFKDISFNDFPSLLSYKDR-------MKIALLIVSTRKNRPSGSSLQAWIKS--------- 144 (425)
T ss_dssp CCCCEEEEESSTTCCSSTTCEEEEEGGGGGGGSCHHHH-------HHHHHHHHHTTTSCCCSSBHHHHHHH---------
T ss_pred cCCceEEeecCCCcccccccccceehhhhhhhCCHHHH-------HHHHHHHHhhhhcCCCCCCHHHHHHH---------
Confidence 2111 1110 000 000000000001111100 01111111111112233444444422
Q ss_pred ccccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-hhhhcCCcccccccccC---ccccccCCcccccc
Q 010001 180 FFEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWD---KEELLPGGHGLMVR 255 (520)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~ 255 (520)
.+.++.++.++.++ ...++.++..++..... ......++..++.+
T Consensus 145 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~g 193 (425)
T 3ka7_A 145 -------------------------------QVSDEWLIKFADSFCGWALSLKSDEVPVEEVFEIIENMYRFGGTGIPEG 193 (425)
T ss_dssp -------------------------------HCCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHHHHCSCEEETT
T ss_pred -------------------------------hcCCHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHhcCCccccCC
Confidence 23334444444443 33456666666654322 11123467778899
Q ss_pred ChHHHHHHHhc-----cCCeecCceeEEEEEeCCeEE-EEEcCCcEEEcCEEEEecChhhhhcCcccccCCC--chHHHH
Q 010001 256 GYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRL--PDWKEA 327 (520)
Q Consensus 256 G~~~l~~~L~~-----gv~i~~~~~V~~I~~~~~~v~-V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~l--~~~~~~ 327 (520)
|++.++++|++ |++|+++++|++|..+++++. |++. |+++.||.||+|+|++.+.+++.. .+.+ |....+
T Consensus 194 G~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~~-g~~~~ad~VV~a~~~~~~~~ll~~-~~~~~~~~~~~~ 271 (425)
T 3ka7_A 194 GCKGIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIAD-DRIHDADLVISNLGHAATAVLCSE-ALSKEADAAYFK 271 (425)
T ss_dssp SHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET-TEEEECSEEEECSCHHHHHHHTTT-TCCTTTTHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEEC-CEEEECCEEEECCCHHHHHHhcCC-cccccCCHHHHH
Confidence 99999988853 889999999999999998875 7665 779999999999999988764432 2223 677788
Q ss_pred HHhhcCCcceeEEEEEeCCCcccCCccceeec-CCCCce------eEeeeccCCCCceEEEEEechhhhHHHhcCCHHHH
Q 010001 328 AIDDLGVGIENKIIMHFDKVFWPNVEFLGVVS-DTSYGC------SYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAA 400 (520)
Q Consensus 328 ~~~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~-~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~ 400 (520)
.+..+.+.+..++++.++++.+.. .+.+. .+.... +..+....|+++.++.++..... + ..+. ++++
T Consensus 272 ~~~~~~~~~~~~v~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~s~~~p~~ap~G~~~l~~~~~~~~-~-~~~~-~~~~ 345 (425)
T 3ka7_A 272 MVGTLQPSAGIKICLAADEPLVGH---TGVLLTPYTRRINGVNEVTQADPELAPPGKHLTMCHQYVAP-E-NVKN-LESE 345 (425)
T ss_dssp HHHHCCCBEEEEEEEEESSCSSCS---SSEEECCSSSSEEEEECGGGTCGGGSCTTCEEEEEEEEECG-G-GGGG-HHHH
T ss_pred HhhCcCCCceEEEEeecCCCccCc---CEEEECCChhhcceEEeccCCCCCcCCCCCeEEEEEecccc-c-cccc-hHHH
Confidence 888999888888999999876532 22222 221111 11112234567766655543321 1 1122 3456
Q ss_pred HHHHHHHHHHHCCCCCCCcEEEeccCCCCCCCCccccCCCCCCChhHHHHhcCCCCcEEEeeccccCcCCccchHHHHHH
Q 010001 401 ANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTG 480 (520)
Q Consensus 401 ~~~~~~~L~~~~~~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egAi~SG 480 (520)
++.++++|++++|. ..+....+++|.. ..+.|. ++ ...++..++|++|||+|||++.+.+..++++|+.||
T Consensus 346 ~~~~~~~l~~~~p~-~~~~~~~v~~~~~---~~P~~~---~~--~~~~~~~~~p~~gL~laG~~~~~~gg~gv~~~~~s~ 416 (425)
T 3ka7_A 346 IEMGLEDLKEIFPG-KRYEVLLIQSYHD---EWPVNR---AA--SGTDPGNETPFSGLYVVGDGAKGKGGIEVEGVALGV 416 (425)
T ss_dssp HHHHHHHHHHHSTT-CCEEEEEEEEEBT---TBCSBS---SC--TTCCCCSBCSSBTEEECSTTSCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CceEEEEEEEECC---Cccccc---cc--cCCCCCCCCCcCCeEEeCCccCCCCCCccHHHHHHH
Confidence 79999999999987 3455567788864 223332 22 233466788999999999999985546999999999
Q ss_pred HHHHHHHH
Q 010001 481 LMAAEDCR 488 (520)
Q Consensus 481 ~~aA~~i~ 488 (520)
.+||++|+
T Consensus 417 ~~~~~~i~ 424 (425)
T 3ka7_A 417 MSVMEKVL 424 (425)
T ss_dssp HHHHHC--
T ss_pred HHHHHHhh
Confidence 99999886
No 17
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=309.63 Aligned_cols=398 Identities=21% Similarity=0.219 Sum_probs=259.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEeccCCCCceeeecCC-CCcccccccceecCCC-CCCchHHHHHHcCCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASF--KVVLLESRDRVGGRVHTDYS-FGFPVDLGASWLHGVC-QENPLAPVISRLGLP 103 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~--~V~vlE~~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~-~~~~~~~l~~~lg~~ 103 (520)
++||+|||||++||+||++|+++|+ +|+|||+++++||++++... +|+.+|.|++++.... .+..+.++++++|++
T Consensus 2 ~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t~~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~ 81 (477)
T 3nks_A 2 GRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGLD 81 (477)
T ss_dssp CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCEEECTTSCEEESSCCCBCCCHHHHHHHHHHHHHTTCG
T ss_pred CceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEEEeccCCeEEEeCCCcccCCCcccHHHHHHHHHcCCc
Confidence 4799999999999999999999999 99999999999999999654 5899999999875221 134578999999997
Q ss_pred e--eeecCCC-----ccccccCccceeeecCCC------CccCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHH
Q 010001 104 L--YRTSGDN-----SVLYDHDLESYALFDMDG------NQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISI 170 (520)
Q Consensus 104 ~--~~~~~~~-----~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (520)
. .+..... ...+.++. ...+..... ..+.... +...+..... ......+.++.+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~-~~~~p~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~s~~~~~-- 150 (477)
T 3nks_A 82 SEVLPVRGDHPAAQNRFLYVGGA-LHALPTGLRGLLRPSPPFSKPL-------FWAGLRELTK-PRGKEPDETVHSFA-- 150 (477)
T ss_dssp GGEEEECTTSHHHHCEEEEETTE-EEECCCSSCC---CCTTSCSCS-------SHHHHTTTTS-CCCCSSCCBHHHHH--
T ss_pred ceeeecCCCCchhcceEEEECCE-EEECCCChhhcccccchhhhHH-------HHHHHHhhhc-CCCCCCCcCHHHHH--
Confidence 3 2211110 11111111 000000000 0000000 0000000000 00111223333333
Q ss_pred HHhcCccccccccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-hhhhcCCcccccccccCccc-----
Q 010001 171 VFDRRPELRFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEE----- 244 (520)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----- 244 (520)
...++.++.+.++.++ .+.++.++..+++.......
T Consensus 151 --------------------------------------~~~~g~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~l~~~e~ 192 (477)
T 3nks_A 151 --------------------------------------QRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQ 192 (477)
T ss_dssp --------------------------------------HHHHCHHHHHHTHHHHHHHHHSSCTTTBBHHHHCHHHHHHHH
T ss_pred --------------------------------------HHhhCHHHHHHHHHHHhcccccCCHHHhhHHHHHHHHHHHHH
Confidence 2344555666555554 55677777766655432110
Q ss_pred ----------------------------cccCCccccccChHHHHHHHhc-----cCCeecCceeEEEEEeCCe-EEEEE
Q 010001 245 ----------------------------LLPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIG-VKVTV 290 (520)
Q Consensus 245 ----------------------------~~~~g~~~~~~G~~~l~~~L~~-----gv~i~~~~~V~~I~~~~~~-v~V~~ 290 (520)
....+...+.+|++.++++|++ |++|+++++|++|+.++++ +.|++
T Consensus 193 ~~gsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~ 272 (477)
T 3nks_A 193 THRSILLGLLLGAGRTPQPDSALIRQALAERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSL 272 (477)
T ss_dssp HHSCHHHHHHHC-----CCCCHHHHHHHHTTCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEEC
T ss_pred HcCCHHHHHHHhcccccCCchhhhhhhcccCccEEEECCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEE
Confidence 0012456788999999988853 7899999999999998877 88877
Q ss_pred cCCcEEEcCEEEEecChhhhhcCcccccCCCchHHHHHHhhcCCcceeEEEEEeCCCcccCCccceeecCCC---CceeE
Q 010001 291 EGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTS---YGCSY 367 (520)
Q Consensus 291 ~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~~---~~~~~ 367 (520)
.++ ++.||+||+|+|++.+.+++.. +++...+.+.++++.+..++.+.|+.++|+...+ |++.+.. ....+
T Consensus 273 ~~~-~~~ad~vv~a~p~~~~~~ll~~----~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~-g~l~~~~~~~~~~~~ 346 (477)
T 3nks_A 273 RDS-SLEADHVISAIPASVLSELLPA----EAAPLARALSAITAVSVAVVNLQYQGAHLPVQGF-GHLVPSSEDPGVLGI 346 (477)
T ss_dssp SSC-EEEESEEEECSCHHHHHHHSCG----GGHHHHHHHHTCCEEEEEEEEEEETTCCCSSCSS-EEECCTTTCSSEEEE
T ss_pred CCe-EEEcCEEEECCCHHHHHHhccc----cCHHHHHHHhcCCCCcEEEEEEEECCCCCCCCCc-eEEccCCCCCCceEE
Confidence 544 8999999999999988765332 3455677788899999999999999999975544 6665432 11222
Q ss_pred eeec------cCCCCceEEEEEechhhhHHHh----cCCHHHHHHHHHHHHHHHCCCCCCCcEEEeccCCCCCCCCcccc
Q 010001 368 FLNL------HKATGHCVLVYMPAGQLARDIE----KMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYS 437 (520)
Q Consensus 368 ~~~~------~~~~~~~~l~~~~~~~~~~~~~----~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~w~~~~~~~g~~~ 437 (520)
.++. ..+++..++++++.+.....+. ..+++++.+.++++|+++++...+|..+.+++|.. +.++|.
T Consensus 347 ~~~s~~~~~~~~~~~~~~l~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~v~rw~~---a~p~~~ 423 (477)
T 3nks_A 347 VYDSVAFPEQDGSPPGLRVTVMLGGSWLQTLEASGCVLSQELFQQRAQEAAATQLGLKEMPSHCLVHLHKN---CIPQYT 423 (477)
T ss_dssp ECHHHHCGGGSTTTTCEEEEEEECHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHCCCSCCSEEEEEEEEE---EEECCB
T ss_pred EEeccccCCCCCCCCceEEEEEECCccccccccccCCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEEEcCC---ccCCCC
Confidence 2221 1123677888888887766653 46899999999999999998767788889999954 333332
Q ss_pred CCCCCCC---hhHHHHhcCCCCcEEEeeccccCcCCccchHHHHHHHHHHHHHHH
Q 010001 438 YDTVGKS---HDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 489 (520)
Q Consensus 438 ~~~~~~~---~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~ 489 (520)
++.. ......+....++|++||+++.+ .++++|+.||.+||++|+.
T Consensus 424 ---~g~~~~~~~~~~~l~~~~~~l~l~G~~~~G---~gv~~a~~sg~~aA~~il~ 472 (477)
T 3nks_A 424 ---LGHWQKLESARQFLTAHRLPLTLAGASYEG---VAVNDCIESGRQAAVSVLG 472 (477)
T ss_dssp ---TTHHHHHHHHHHHHHHTTCSEEECSTTTSC---CSHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEccCCCC---CcHHHHHHHHHHHHHHHHh
Confidence 3322 12222333334699999998654 4799999999999998875
No 18
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=100.00 E-value=1.5e-36 Score=312.60 Aligned_cols=405 Identities=13% Similarity=0.108 Sum_probs=253.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhC-CCcEEEEeccCCCCceeeec-CCCCcccccccceecCCCCCCchHHHHHHcCCC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRDRVGGRVHTD-YSFGFPVDLGASWLHGVCQENPLAPVISRLGLP 103 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~-G~~V~vlE~~~~~GG~~~s~-~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~ 103 (520)
.+++||+|||||+|||+||++|+|+ |++|+|||+++++||+++|. ..+|+.+|.|+|++++ .+..+.+++++++..
T Consensus 8 ~~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~T~~~~~G~~~D~G~h~~~~--~~~~v~~l~~e~~~~ 85 (513)
T 4gde_A 8 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIFS--HYKYFDDCLDEALPK 85 (513)
T ss_dssp SEEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGCEEECTTSCEEESSCCCCCC--CBHHHHHHHHHHSCS
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCeeeEEecCCEEEEeCceEecC--CCHHHHHHHHHhCCc
Confidence 4568999999999999999999985 99999999999999999985 5689999999999863 456788999988764
Q ss_pred ---eeeecCCCccccccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhcCccccc
Q 010001 104 ---LYRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRF 180 (520)
Q Consensus 104 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (520)
+........+++++....+.+ ......++....... ...+...............++.+++
T Consensus 86 ~~~~~~~~~~~~i~~~g~~~~~p~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~------------ 149 (513)
T 4gde_A 86 EDDWYTHQRISYVRCQGQWVPYPF-QNNISMLPKEEQVKC---IDGMIDAALEARVANTKPKTFDEWI------------ 149 (513)
T ss_dssp GGGEEEEECCEEEEETTEEEESSG-GGGGGGSCHHHHHHH---HHHHHHHHHHHHTCCSCCCSHHHHH------------
T ss_pred cceeEEecCceEEEECCeEeecch-hhhhhhcchhhHHHH---HHHHHHHHHhhhcccccccCHHHHH------------
Confidence 222222222333222111111 111111222211111 1122222222222233344555544
Q ss_pred cccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-hhhhcCCcccccccccCcccc--------------
Q 010001 181 FEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEEL-------------- 245 (520)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------------- 245 (520)
...+++.+.+.++.++ .+.++.++..++..+......
T Consensus 150 ----------------------------~~~~g~~l~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~ 201 (513)
T 4gde_A 150 ----------------------------VRMMGTGIADLFMRPYNFKVWAVPTTKMQCAWLGERVAAPNLKAVTTNVILG 201 (513)
T ss_dssp ----------------------------HHHHHHHHHHHTHHHHHHHHHSSCGGGBCSGGGCSSCCCCCHHHHHHHHHHT
T ss_pred ----------------------------HHhhhhhhhhhhcchhhhhhccCChHHhhHHHHHHhhcccchhhhhhhhhhc
Confidence 3455666777666665 567777777776654331110
Q ss_pred -------ccC-CccccccChHHHHHHHhc-----cCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhhhc
Q 010001 246 -------LPG-GHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKA 312 (520)
Q Consensus 246 -------~~~-g~~~~~~G~~~l~~~L~~-----gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~ 312 (520)
... ....+++|++.++++|++ |++|+++++|++|..+++.+ ++.+|+++.||+||+|+|++.+.+
T Consensus 202 ~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~~v--~~~~G~~~~ad~vI~t~P~~~l~~ 279 (513)
T 4gde_A 202 KTAGNWGPNATFRFPARGGTGGIWIAVANTLPKEKTRFGEKGKVTKVNANNKTV--TLQDGTTIGYKKLVSTMAVDFLAE 279 (513)
T ss_dssp CCCCSCBTTBEEEEESSSHHHHHHHHHHHTSCGGGEEESGGGCEEEEETTTTEE--EETTSCEEEEEEEEECSCHHHHHH
T ss_pred ccccccccccceeecccCCHHHHHHHHHHHHHhcCeeeecceEEEEEEccCCEE--EEcCCCEEECCEEEECCCHHHHHH
Confidence 001 112357999999999964 66899999999999888764 568999999999999999998876
Q ss_pred CcccccCCCchHHHHHHhhcCCcceeEEEEEeCCCcccC---Cccceee-------------------cCCCC---ceeE
Q 010001 313 RTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPN---VEFLGVV-------------------SDTSY---GCSY 367 (520)
Q Consensus 313 l~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~---~~~~g~~-------------------~~~~~---~~~~ 367 (520)
++. +.........+.|.+...|.+.++...... ..+.... .++.. ....
T Consensus 280 ~l~------~~~~~~~~~~l~y~~~~~v~l~~~~~~~~~~~~~~~~y~~~~~~~f~Ri~~~~n~sp~~~p~~~~~~~~~~ 353 (513)
T 4gde_A 280 AMN------DQELVGLTKQLFYSSTHVIGVGVRGSRPERIGDKCWLYFPEDNCPFYRATIFSNYSPYNQPEASAALPTMQ 353 (513)
T ss_dssp HTT------CHHHHHHHTTCCEEEEEEEEEEEESSCCTTTTTCCEEECCSTTCSCSEEECGGGTCGGGSCCTTCCEECCE
T ss_pred hcC------chhhHhhhhcccCCceEEEEEEEeccccccccccceeeccCCCCceeEEEecCCCCcccCCCCCceEEEEE
Confidence 532 234455667888888888888776432211 1111000 00000 0011
Q ss_pred eeecc----CCCCceEEEEEechhhhHHHhcCCHHHHHHHHHHHHHHHCCCCCC--CcEEEeccCCCCCCCCccccCCCC
Q 010001 368 FLNLH----KATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASS--PIQYLVSHWGTDANSLGSYSYDTV 441 (520)
Q Consensus 368 ~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~~~~~~--~~~~~~~~w~~~~~~~g~~~~~~~ 441 (520)
+.+.. .+.+...+..+..+....++..+++|++++.++++|.++.+.... +....+.|| +++++.|...+.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~de~l~~~~~~~L~~~~~i~~~~~i~~~~v~r~---~~ayP~y~~~~~ 430 (513)
T 4gde_A 354 LADGSRPQSTEAKEGPYWSIMLEVSESSMKPVNQETILADCIQGLVNTEMLKPTDEIVSTYHRRF---DHGYPTPTLERE 430 (513)
T ss_dssp ETTSCCCSCCSEECCCEEEEEEEEEEBTTBCCCTTTHHHHHHHHHHHTTSSCTTCEEEEEEEEEE---EEEEECCBTTHH
T ss_pred eccCCCcccccCCcceEEEEEecccchhccCCCHHHHHHHHHHHHHHhcCCCCccceEEEEEEEC---CCeecccCHhHH
Confidence 11110 111222233333333344567889999999999999998865433 356777888 344444443322
Q ss_pred CCChhHHHHhcCCCCcEEEeeccccCcCC-ccchHHHHHHHHHHHHHHH
Q 010001 442 GKSHDLYERLRIPVDNLFFAGEATSMSYP-GSVHGAFSTGLMAAEDCRM 489 (520)
Q Consensus 442 ~~~~~~~~~~~~p~~~l~~aG~~~~~~~~-g~~egAi~SG~~aA~~i~~ 489 (520)
.....+++.+.. +|||+||+...+.|+ ++|++|++||+.||++|++
T Consensus 431 ~~~~~~~~~l~~--~~l~~~GR~g~~~Y~~~n~D~a~~~g~~aa~~I~~ 477 (513)
T 4gde_A 431 GTLTQILPKLQD--KDIWSRGRFGSWRYEVGNQDHSFMLGVEAVDNIVN 477 (513)
T ss_dssp HHHHHHHHHHHH--TTEEECSTTTTCCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--cCcEEecCCcccCcCCCCHHHHHHHHHHHHHHHHc
Confidence 223445555554 599999999888775 6899999999999999986
No 19
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=100.00 E-value=7e-36 Score=306.40 Aligned_cols=431 Identities=16% Similarity=0.168 Sum_probs=205.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcCCCee--
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY-- 105 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~-- 105 (520)
+++|||||||++||+||++|+++|++|+|||+++++||+++|+..+|+.+|.|+|++.+ ...+.++++.+|.+..
T Consensus 1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~t~~~~G~~~D~G~~~~~~---~~~~~~l~~~~g~~~~~~ 77 (501)
T 4dgk_A 1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQGFTFDAGPTVITD---PSAIEELFALAGKQLKEY 77 (501)
T ss_dssp CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------CEEEETTEEEECSCCCBSC---THHHHHHHHTTTCCGGGT
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEEEEEeCCEEEecCceeecC---chhHHHHHHHhcchhhhc
Confidence 47899999999999999999999999999999999999999999999999999998753 2356778888875421
Q ss_pred ----eecCCCccccccCccceeeecCCCCccCHHHHHHHH-------HHHHHHHHHHHHhhhcCCC------CCcHHHHH
Q 010001 106 ----RTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVG-------EAFESILKETDKVREEHDE------DMSIQRAI 168 (520)
Q Consensus 106 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 168 (520)
+......+.+.++. .+.+ ..+ .......+. +.+.+++............ ..+..+.+
T Consensus 78 ~~~~~~~~~~~~~~~~g~-~~~~-~~~----~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (501)
T 4dgk_A 78 VELLPVTPFYRLCWESGK-VFNY-DND----QTRLEAQIQQFNPRDVEGYRQFLDYSRAVFKEGYLKLGTVPFLSFRDML 151 (501)
T ss_dssp CCEEEESSSEEEEETTSC-EEEE-CSC----HHHHHHHHHHHCTHHHHHHHHHHHHHHHHTSSSCC--CCCCCCCHHHHH
T ss_pred eeeEecCcceEEEcCCCC-EEEe-ecc----HHHHHHHHhhcCccccchhhhHHHHHHHhhhhhhhhccccccchhhhhh
Confidence 11111111111111 0110 000 011111111 1222333332222111100 01111111
Q ss_pred HHHHhcCccccccccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCcccccccc-cCcccccc
Q 010001 169 SIVFDRRPELRFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRMEGWFAADAETISLKS-WDKEELLP 247 (520)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 247 (520)
. . ...+..+...+.+.+.+ ...+.++.++.++.......+..+...+... +.......
T Consensus 152 ~----~----------~~~~~~l~~~~~~~~~~-------~~~~~~~~l~~~l~~~~~~~g~~p~~~~~~~~~~~~~~~~ 210 (501)
T 4dgk_A 152 R----A----------APQLAKLQAWRSVYSKV-------ASYIEDEHLRQAFSFHSLLVGGNPFATSSIYTLIHALERE 210 (501)
T ss_dssp H----S----------GGGTTTSHHHHHHHHHH-------HTTCCCHHHHHHHHHHHHHHHSCC--CCCTHHHHHHHHSC
T ss_pred h----h----------hhhhhhhhhcccHHHHH-------HHHhccHHHHhhhhhhhcccCCCcchhhhhhhhhhhhhcc
Confidence 0 0 00011111112222222 2223333333333333333344443332221 11222234
Q ss_pred CCccccccChHHHHHHHh-----ccCCeecCceeEEEEEeCCeE-EEEEcCCcEEEcCEEEEecChhhhhcCcccccCCC
Q 010001 248 GGHGLMVRGYLPVINTLA-----KGLDIRLGHRVTKITRHYIGV-KVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRL 321 (520)
Q Consensus 248 ~g~~~~~~G~~~l~~~L~-----~gv~i~~~~~V~~I~~~~~~v-~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~l 321 (520)
.|..+++||++.++++|+ .|++|++|++|++|..+++++ .|++++|+++.||.||+++++..+...++.-. ++
T Consensus 211 ~G~~~p~GG~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~~~~~Ll~~~-~~ 289 (501)
T 4dgk_A 211 WGVWFPRGGTGALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVHTYRDLLSQH-PA 289 (501)
T ss_dssp CCEEEETTHHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC---------------
T ss_pred CCeEEeCCCCcchHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHHHHHHhcccc-cc
Confidence 567789999999999985 389999999999999999997 59999999999999999998876654343222 23
Q ss_pred chHHHHHHhhcCCc-ceeEEEEEeCCCccc-CCccc-------ee---ec-CCCC--ceeEee-------eccCCCCceE
Q 010001 322 PDWKEAAIDDLGVG-IENKIIMHFDKVFWP-NVEFL-------GV---VS-DTSY--GCSYFL-------NLHKATGHCV 379 (520)
Q Consensus 322 ~~~~~~~~~~~~~~-~~~~v~l~~~~~~~~-~~~~~-------g~---~~-~~~~--~~~~~~-------~~~~~~~~~~ 379 (520)
+....+.+....+. ....+++.++..... ..... .. +. .... ....+. ....|+++..
T Consensus 290 ~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~dp~~ap~G~~~ 369 (501)
T 4dgk_A 290 AVKQSNKLQTKRMSNSLFVLYFGLNHHHDQLAHHTVCFGPRYRELIDEIFNHDGLAEDFSLYLHAPCVTDSSLAPEGCGS 369 (501)
T ss_dssp -------------CCEEEEEEEEESSCCTTSCSEEEEEECC-------------CCCEEEEEEECGGGTCGGGSSTTCEE
T ss_pred chhhhhhhhccccCCceeEEEecccCCccccccceeccccchhhhccccccccccccCCceecccCCCCCCCcCCCCCce
Confidence 34444556555553 345667777654311 00000 00 00 0000 011111 1123566665
Q ss_pred EEEEechhh----hHHHhcCCHHHHHHHHHHHHHHHC-CCCCCCcEEEec----cCCCCCCCC-cc-ccCC-CCCCChhH
Q 010001 380 LVYMPAGQL----ARDIEKMSDEAAANFAFTQLKKIL-PDASSPIQYLVS----HWGTDANSL-GS-YSYD-TVGKSHDL 447 (520)
Q Consensus 380 l~~~~~~~~----~~~~~~~~~ee~~~~~~~~L~~~~-~~~~~~~~~~~~----~w~~~~~~~-g~-~~~~-~~~~~~~~ 447 (520)
+.+++.... ..+|.. .++++.+++++.|++.+ |++++.+..... .|....... |. |... ...+....
T Consensus 370 ~~~~~~~p~~~~~~~~~~~-~~~~~~~~vl~~l~~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~~~ 448 (501)
T 4dgk_A 370 YYVLAPVPHLGTANLDWTV-EGPKLRDRIFAYLEQHYMPGLRSQLVTHRMFTPFDFRDQLNAYHGSAFSVEPVLTQSAWF 448 (501)
T ss_dssp EEEEEEECCTTTSCCCHHH-HHHHHHHHHHHHHHHHTCTTHHHHEEEEEEECTTTTC-----------------------
T ss_pred EEEEEecCccccccccHHH-HHHHHHHHHHHHHHHhhCCChHHceEEEEECCHHHHHHHcCCCCccccChhcchhhcccc
Confidence 555442211 112322 25778899999998754 776554322211 232221111 11 1111 12222334
Q ss_pred HHHh-cCCCCcEEEeeccccCcCCccchHHHHHHHHHHHHHHHHHH
Q 010001 448 YERL-RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 492 (520)
Q Consensus 448 ~~~~-~~p~~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~~l~ 492 (520)
+|.. .+|++|||+||+++.++ ++++||+.||..||++|++.|+
T Consensus 449 RP~~~~t~i~gLyl~G~~t~pG--~Gv~ga~~SG~~aA~~il~dL~ 492 (501)
T 4dgk_A 449 RPHNRDKTITNLYLVGAGTHPG--AGIPGVIGSAKATAGLMLEDLI 492 (501)
T ss_dssp -------CCTTEEECCCH--------HHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCEEEECCCCCCc--ccHHHHHHHHHHHHHHHHHHhc
Confidence 5543 47899999999998875 6899999999999999998774
No 20
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.6e-35 Score=286.65 Aligned_cols=226 Identities=16% Similarity=0.209 Sum_probs=180.5
Q ss_pred ccccChHHHHHHHhc--cCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCchHHHHHH
Q 010001 252 LMVRGYLPVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAI 329 (520)
Q Consensus 252 ~~~~G~~~l~~~L~~--gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~l~~~~~~~~ 329 (520)
...+|+..++++|.+ |++|+++++|++|+.++++|.|++.+|+++.+|.||+|+|++.+.+++..+.|.||+...+.+
T Consensus 106 ~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~A~p~~~~~~ll~~~~~~l~~~~~~~l 185 (342)
T 3qj4_A 106 VAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPVPEILQLQGDITTLISECQRQQL 185 (342)
T ss_dssp ECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEEECSCHHHHTTCBSTHHHHSCHHHHHHH
T ss_pred ecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHHHHHHhcccccccCHHHHHHH
Confidence 456788999999986 999999999999999999999999999878999999999999988876666667888888999
Q ss_pred hhcCCcceeEEEEEeCCCcccCCccceeecCCCCceeE-eeeccCCC-----CceEEEEEechhhhHHHhcCCHHHHHHH
Q 010001 330 DDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSY-FLNLHKAT-----GHCVLVYMPAGQLARDIEKMSDEAAANF 403 (520)
Q Consensus 330 ~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~ee~~~~ 403 (520)
..+++.+..+|++.|+.++|.+.++.|.+.++.....+ +.+..++. +...++++..+.++.++.+.+++++.+.
T Consensus 186 ~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 265 (342)
T 3qj4_A 186 EAVSYSSRYALGLFYEAGTKIDVPWAGQYITSNPCIRFVSIDNKKRNIESSEIGPSLVIHTTVPFGVTYLEHSIEDVQEL 265 (342)
T ss_dssp HTCCBCCEEEEEEECSSCC--CCSCSEEECSSCSSEEEEEEHHHHTTCCCC-CCCEEEEEECHHHHHHTTTSCHHHHHHH
T ss_pred hcCCccccEEEEEEECCCCccCCceeeEEccCCcceEEEEccccCCCCCCCCCCceEEEECCHHHHHHhhcCCHHHHHHH
Confidence 99999999999999999888777788887765443333 33333222 2346788888888888999999999999
Q ss_pred HHHHHHHHCCCCCCCcEEEeccCCCCCCCCccccCC-CCCCChhHHHHhc-CCCCcEEEeeccccCcCCccchHHHHHHH
Q 010001 404 AFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYD-TVGKSHDLYERLR-IPVDNLFFAGEATSMSYPGSVHGAFSTGL 481 (520)
Q Consensus 404 ~~~~L~~~~~~~~~~~~~~~~~w~~~~~~~g~~~~~-~~~~~~~~~~~~~-~p~~~l~~aG~~~~~~~~g~~egAi~SG~ 481 (520)
++++|+++++...+|..+.++||.. +.++|... .++ .+. .+.++|++|||++.+ +++|+|+.||.
T Consensus 266 ~~~~l~~~~g~~~~p~~~~v~rW~~---a~p~~~~~~~~~-------~~~~~~~~~l~laGd~~~g---~~v~~ai~sg~ 332 (342)
T 3qj4_A 266 VFQQLENILPGLPQPIATKCQKWRH---SQVTNAAANCPG-------QMTLHHKPFLACGGDGFTQ---SNFDGCITSAL 332 (342)
T ss_dssp HHHHHHHHSCSCCCCSEEEEEEETT---CSBSSCCSSSCS-------CEEEETTTEEEECSGGGSC---SSHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCceeeeccccc---cccccccCCCcc-------eeEecCCccEEEEccccCC---CCccHHHHHHH
Confidence 9999999999888899999999964 33333211 111 112 456899999999876 69999999999
Q ss_pred HHHHHHHHH
Q 010001 482 MAAEDCRMR 490 (520)
Q Consensus 482 ~aA~~i~~~ 490 (520)
+||++|+..
T Consensus 333 ~aa~~i~~~ 341 (342)
T 3qj4_A 333 CVLEALKNY 341 (342)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHhh
Confidence 999988754
No 21
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=100.00 E-value=1.1e-34 Score=298.81 Aligned_cols=243 Identities=19% Similarity=0.178 Sum_probs=179.7
Q ss_pred CccccccChHHHHHHHhc----cCCeecCceeE--EEEEeCCe-------EEE-EEcCCc--EEEcCEEEEecChhhhhc
Q 010001 249 GHGLMVRGYLPVINTLAK----GLDIRLGHRVT--KITRHYIG-------VKV-TVEGGK--TFVADAVVVAVPLGVLKA 312 (520)
Q Consensus 249 g~~~~~~G~~~l~~~L~~----gv~i~~~~~V~--~I~~~~~~-------v~V-~~~~g~--~~~ad~VI~a~p~~~l~~ 312 (520)
....+.||++.++++|.+ |..|+++++|+ +|.+.+++ |+| .+.+|+ +++||+||+|+|+..+..
T Consensus 338 ~~~~i~GG~~~L~~aLa~~l~~g~~I~l~~~V~~~~I~~~~~g~~~~~~~V~V~~~~~G~~~~~~aD~VIvTvP~~~L~~ 417 (721)
T 3ayj_A 338 EYTLPVTENVEFIRNLFLKAQNVGAGKLVVQVRQERVANACHSGTASARAQLLSYDSHNAVHSEAYDFVILAVPHDQLTP 417 (721)
T ss_dssp EECCSSSSTHHHHHHHHHHHHHHTTTSEEEEEECEEEEEEEECSSSSCCEEEEEEETTCCEEEEEESEEEECSCHHHHHH
T ss_pred ceeEECCcHHHHHHHHHHhcccCCceEeCCEEEeeeEEECCCCCccccceEEEEEecCCceEEEEcCEEEECCCHHHHhh
Confidence 356789999999999864 56899999999 99987655 888 556776 789999999999998842
Q ss_pred ----Cccc----------------------ccCCC-c-------hHHHHHHhhcCCcceeEEEEEe-----CCCcccCC-
Q 010001 313 ----RTIK----------------------FEPRL-P-------DWKEAAIDDLGVGIENKIIMHF-----DKVFWPNV- 352 (520)
Q Consensus 313 ----l~~~----------------------~~~~l-~-------~~~~~~~~~~~~~~~~~v~l~~-----~~~~~~~~- 352 (520)
..+. +.|.| | ....++++++++...+|+++.| +.+||++.
T Consensus 418 ~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~pplLlp~~~~~~~~~~~~Ai~~l~~~~s~Kv~l~~~~~~~~~~fW~~~~ 497 (721)
T 3ayj_A 418 IVSRSGFEHAASQNLGDAGLGLETHTYNQVYPPLLLSDSSPAANARIVTAIGQLHMARSSKVFATVKTAALDQPWVPQWR 497 (721)
T ss_dssp HHSSSCSSCEEEEEESCGGGTCCCEEEEEEBCSSCCCSSCHHHHHHHHHHHHTCCEECEEEEEEEEEGGGGGSTTSCEET
T ss_pred ccccccccccccccccccccccccccccccCCcccCCcccccccHHHHHHHHhcCcccceEEEEEEccccCCCCcccccC
Confidence 1222 23435 8 8889999999999999999999 99999875
Q ss_pred -ccceeecCCCCce-eEee------eccCCCCceEEEEEechhhhHHH------hcCCHHHH-------HHHHHHHHH--
Q 010001 353 -EFLGVVSDTSYGC-SYFL------NLHKATGHCVLVYMPAGQLARDI------EKMSDEAA-------ANFAFTQLK-- 409 (520)
Q Consensus 353 -~~~g~~~~~~~~~-~~~~------~~~~~~~~~~l~~~~~~~~~~~~------~~~~~ee~-------~~~~~~~L~-- 409 (520)
...+....+.... .++. +...+....++..|++++.+..| ..+++++. ++.++++|.
T Consensus 498 g~~i~~s~TD~~~r~~~~~p~p~~~d~~~~~~gvlL~sYtwg~dA~~~~~~~g~~~~~~~er~~~~~~~~~~~l~~la~~ 577 (721)
T 3ayj_A 498 GEPIKAVVSDSGLAASYVVPSPIVEDGQAPEYSSLLASYTWEDDSTRLRHDFGLYPQNPATETGTADGMYRTMVNRAYRY 577 (721)
T ss_dssp TEECCEEEETTTTEEEEEEECSCC----CCSEEEEEEEEEETHHHHHHHTTCCSSSEESSSSSCCCHHHHHHHHHHTCCE
T ss_pred CCCceeeecCCCcceEEEeccCcccccCCCCCcEEEEEEeCccchhhhhccccccCCChHHhhhhhhHHHHHHHHHHhhh
Confidence 2233344443333 3332 12222223466778888888888 44454444 999999999
Q ss_pred HHCCCCC-----------C---CcEEEeccCCCCCCCCccccCCCCCCCh------hHH--HHhcCCCCcEEEeeccccC
Q 010001 410 KILPDAS-----------S---PIQYLVSHWGTDANSLGSYSYDTVGKSH------DLY--ERLRIPVDNLFFAGEATSM 467 (520)
Q Consensus 410 ~~~~~~~-----------~---~~~~~~~~w~~~~~~~g~~~~~~~~~~~------~~~--~~~~~p~~~l~~aG~~~~~ 467 (520)
+++|... . +.++....|..++ +.|+|....+|+.. .+. .....+.++|||||++++.
T Consensus 578 ~~~p~~~~~~~~~~~~l~~~~~~~~~~~~dW~~dp-s~Gaf~~~~pgq~~~~~l~~~~~~~~~~~~~~gri~fAGe~~S~ 656 (721)
T 3ayj_A 578 VKYAGASNAQPWWFYQLLAEARTADRFVFDWTTNK-TAGGFKLDMTGDHHQSNLCFRYHTHALAASLDNRFFIASDSYSH 656 (721)
T ss_dssp ECCTTCSSCEECHHHHHHHTSCSTTCEEEEGGGST-TSSSEECCBTTTHHHHHHHHHGGGGGGCTTTCCCEEECSGGGSS
T ss_pred ccCccccccccchhhhhhhhcccCceEEEeCCCCC-CCCccccCCCccchhhhhhhhhhhhccccCCCCCEEEeehhhcc
Confidence 8888644 1 2345788999999 99999988898832 111 1234567899999999986
Q ss_pred cCCccchHHHHHHHHHHHHHHHHHHH
Q 010001 468 SYPGSVHGAFSTGLMAAEDCRMRVLE 493 (520)
Q Consensus 468 ~~~g~~egAi~SG~~aA~~i~~~l~~ 493 (520)
+.||+|||+.||.+||.+|...+..
T Consensus 657 -~~GWieGAl~Sa~~Aa~~i~~~~~~ 681 (721)
T 3ayj_A 657 -LGGWLEGAFMSALNAVAGLIVRANR 681 (721)
T ss_dssp -CTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred -CCceehHHHHHHHHHHHHHHHHhcC
Confidence 4599999999999999998887654
No 22
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=100.00 E-value=7.9e-34 Score=287.53 Aligned_cols=404 Identities=13% Similarity=0.109 Sum_probs=258.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCC-CcEEEEeccCCCCceeeec-CCCCcccccccceecCCCCCCchHHHHHHcCCCe
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRDRVGGRVHTD-YSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G-~~V~vlE~~~~~GG~~~s~-~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (520)
+.+||+|||||++||+||+.|+++| .+|+|+|+++++||++++. ..+|+.+|.|++++.. ....+.++++++..+.
T Consensus 8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~~~~~~g~~~~~g~~~~~~--~~~~~~~l~~~~~~~~ 85 (484)
T 4dsg_A 8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFS--HYQYFDDVMDWAVQGW 85 (484)
T ss_dssp CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCEEECTTSCEEESSCCCBCC--SBHHHHHHHHHHCSCE
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeeeeecCCCcEEeeCCccccc--ChHHHHHHHHHHhhhh
Confidence 4689999999999999999999998 7999999999999999994 7789999999998863 3456788888875333
Q ss_pred eeecCCCccccccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhcCccccccccc
Q 010001 105 YRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRFFEHV 184 (520)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (520)
........+++.+....+.+ ......++...... .+..++.. ........+.++.+++
T Consensus 86 ~~~~~~~~~~~~g~~~~~P~-~~~~~~l~~~~~~~---~~~~ll~~--~~~~~~~~~~s~~e~~---------------- 143 (484)
T 4dsg_A 86 NVLQRESWVWVRGRWVPYPF-QNNIHRLPEQDRKR---CLDELVRS--HARTYTEPPNNFEESF---------------- 143 (484)
T ss_dssp EEEECCCEEEETTEEEESSG-GGCGGGSCHHHHHH---HHHHHHHH--HHCCCSSCCSSHHHHH----------------
T ss_pred hhccCceEEEECCEEEEeCc-cchhhhCCHHHHHH---HHHHHHHH--HhccCCCCCCCHHHHH----------------
Confidence 33222222222222111110 11111222221111 11222221 1112223445665555
Q ss_pred cCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-hhhhcCCcccccccccCcccc------------------
Q 010001 185 SSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEEL------------------ 245 (520)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------------ 245 (520)
...+++++.+.++.++ .+.++.+++.+++.+......
T Consensus 144 ------------------------~~~~g~~~~~~~~~p~~~~v~~~~~~~ls~~~~~~r~~~~~l~~~~~~~~~~~~~~ 199 (484)
T 4dsg_A 144 ------------------------TRQFGEGIADIFMRPYNFKVWAVPPCLMSTEWVEERVAPVDLERIRRNIQENRDDL 199 (484)
T ss_dssp ------------------------HHHHHHHHCCCCCHHHHHHHHSSCGGGBCSSSCTTTSCCCCHHHHHHHHHHTCCCC
T ss_pred ------------------------HHHhHHHHHHHHHHHHHhhhcCCCHHHhcHHHHhccccCCCHHHHHHHHhhccccc
Confidence 3335566666555555 567788888887765332110
Q ss_pred ---ccCCccc-cccChHHHHHHHhccC---CeecC--ceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhhhcCccc
Q 010001 246 ---LPGGHGL-MVRGYLPVINTLAKGL---DIRLG--HRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIK 316 (520)
Q Consensus 246 ---~~~g~~~-~~~G~~~l~~~L~~gv---~i~~~--~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~ 316 (520)
..+.+.+ ..+|++.++++|++.+ +|+++ ++|++|..++++|. +.+|+++.||+||+|+|++.+.+++..
T Consensus 200 ~~~~~~~f~yp~~gG~~~l~~~la~~l~~~~i~~~~~~~V~~I~~~~~~v~--~~~G~~~~ad~VI~a~p~~~~~~ll~~ 277 (484)
T 4dsg_A 200 GWGPNATFRFPQRGGTGIIYQAIKEKLPSEKLTFNSGFQAIAIDADAKTIT--FSNGEVVSYDYLISTVPFDNLLRMTKG 277 (484)
T ss_dssp CCSTTSEEEEESSSCTHHHHHHHHHHSCGGGEEECGGGCEEEEETTTTEEE--ETTSCEEECSEEEECSCHHHHHHHEEC
T ss_pred CCCccceEEeecCCCHHHHHHHHHhhhhhCeEEECCCceeEEEEecCCEEE--ECCCCEEECCEEEECCCHHHHHHHhhc
Confidence 0111223 3489999999998766 79999 56999999888654 578889999999999999998775544
Q ss_pred ccCCCchHHHHHHhhcCCcceeEEEEEeCCCcccC-CccceeecCCCCc----eeEe---eeccCCCCceEEEEEechhh
Q 010001 317 FEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPN-VEFLGVVSDTSYG----CSYF---LNLHKATGHCVLVYMPAGQL 388 (520)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~-~~~~g~~~~~~~~----~~~~---~~~~~~~~~~~l~~~~~~~~ 388 (520)
..+.+|+...+.+..+++.+..++.+.|+.+...+ .+..++..++... ..++ .....++++..+...+...
T Consensus 278 ~~~~~~~~~~~~l~~l~y~s~~~v~l~~~~~~~~~~~~~~~i~vp~~~~~~~ri~~~s~~~p~~ap~g~~~l~~e~~~~- 356 (484)
T 4dsg_A 278 TGFKGYDEWPAIADKMVYSSTNVIGIGVKGTPPPHLKTACWLYFPEDTSPFYRATVFSNYSKYNVPEGHWSLMLEVSES- 356 (484)
T ss_dssp SSCTTGGGHHHHHHHCCEEEEEEEEEEEESCCCGGGTTCCEEECCSTTCSCSEEECGGGTCGGGSCTTEEEEEEEEEEB-
T ss_pred cCCCCCHHHHHHHhCCCcCceEEEEEEEcCCCcccCCCCeEEEEEcCCCeEEEEEeecCCCcccCCCCeEEEEEEEecC-
Confidence 34457788888899999999999999998763221 1234444443211 1111 1122345565655554332
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHHCCCCC-CC-cEEEeccCCCCCCCCccccCCCCCCChhHHHHhcCCCCcEEEeecccc
Q 010001 389 ARDIEKMSDEAAANFAFTQLKKILPDAS-SP-IQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATS 466 (520)
Q Consensus 389 ~~~~~~~~~ee~~~~~~~~L~~~~~~~~-~~-~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~ 466 (520)
..+..+++++++.++++|.++..-.+ ++ ....+.+|. ++++.|...+......+++.+.. . ||+++|++..
T Consensus 357 --~~~~~~d~~l~~~a~~~L~~~~~~~~~~~~~~~~v~r~~---~~yP~y~~~~~~~~~~~~~~l~~-~-~l~~~Gr~g~ 429 (484)
T 4dsg_A 357 --KYKPVNHSTLIEDCIVGCLASNLLLPEDLLVSKWHYRIE---KGYPTPFIGRNNLLEKAQPELMS-R-CIYSRGRFGA 429 (484)
T ss_dssp --TTBCCCTTSHHHHHHHHHHHTTSCCTTCCEEEEEEEEEE---EEEECCBTTHHHHHHHHHHHHHH-T-TEEECSTTTT
T ss_pred --cCCcCCHHHHHHHHHHHHHHcCCCCccceEEEEEEEEeC---ccccCCCccHHHHHHHHHHHHHh-C-CcEeecCCcc
Confidence 34567899999999999999854322 23 234677883 34444432211122344444443 3 9999999888
Q ss_pred CcCC-ccchHHHHHHHHHHHHHH
Q 010001 467 MSYP-GSVHGAFSTGLMAAEDCR 488 (520)
Q Consensus 467 ~~~~-g~~egAi~SG~~aA~~i~ 488 (520)
+.|. ++|+.|+.||+.||++|+
T Consensus 430 ~~y~v~~~d~~i~sg~~aa~~i~ 452 (484)
T 4dsg_A 430 WRYEVGNQDHSFMQGVEAIDHVL 452 (484)
T ss_dssp CCGGGCSHHHHHHHHHHHHHHHT
T ss_pred cccCCCChHHHHHHHHHHHHHHH
Confidence 7652 379999999999999887
No 23
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=100.00 E-value=1.5e-33 Score=282.23 Aligned_cols=386 Identities=17% Similarity=0.128 Sum_probs=234.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcCCCee--e
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY--R 106 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~--~ 106 (520)
+||+|||||++||+||++|+++|++|+|||+++++||++++...+|+.+|.|++.+........+.++++++|+... +
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~ 80 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPYKGFQLSTGALHMIPHGEDGPLAHLLRILGAKVEIVN 80 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSEEEETTEEEESSSCSEETTTTSSHHHHHHHHHTCCCCEEE
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEEeccCCEEEecCCeEEEccCCChHHHHHHHHhCCcceEEE
Confidence 59999999999999999999999999999999999999999999999999998766544345678999999998632 2
Q ss_pred ecCCCccccccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhcCccccccccccC
Q 010001 107 TSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRFFEHVSS 186 (520)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (520)
......+.+++....+ ......+....... +.......... .....+.++.+++.
T Consensus 81 ~~~~~~~~~~g~~~~~---~~~~~~l~~~~~~~----~~~~~~~~~~~-~~~~~~~s~~~~l~----------------- 135 (421)
T 3nrn_A 81 SNPKGKILWEGKIFHY---RESWKFLSVKEKAK----ALKLLAEIRMN-KLPKEEIPADEWIK----------------- 135 (421)
T ss_dssp CSSSCEEEETTEEEEG---GGGGGGCC------------CCHHHHHTT-CCCCCCSBHHHHHH-----------------
T ss_pred CCCCeEEEECCEEEEc---CCchhhCCHhHHHH----HHHHHHHHHhc-cCCCCCCCHHHHHH-----------------
Confidence 2222222221110000 00000000000000 00000000000 00111123333221
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-hhhhcCCcccccccccCc---cccccCCccccccChHHHHH
Q 010001 187 SLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDK---EELLPGGHGLMVRGYLPVIN 262 (520)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~G~~~l~~ 262 (520)
..+++++.++.++.++ ...++.++..+++..... .....++..++.+|+..+++
T Consensus 136 ----------------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~gG~~~l~~ 193 (421)
T 3nrn_A 136 ----------------------EKIGENEFLLSVLESFAGWADSVSLSDLTALELAKEIRAALRWGGPGLIRGGCKAVID 193 (421)
T ss_dssp ----------------------HHTCCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHHHHCSCEEETTCHHHHHH
T ss_pred ----------------------HhcCCcHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHHhhcCCcceecCCHHHHHH
Confidence 2223444444444443 344566666665533221 11124567789999999998
Q ss_pred HHhc-----cCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCchHHHHHHhhcCCcce
Q 010001 263 TLAK-----GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIE 337 (520)
Q Consensus 263 ~L~~-----gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~ 337 (520)
+|++ |++|+++++|++|+.+++++ |+ .+|+++.||.||+|++++.+.+++.. +.+|....+.+.++.+.+.
T Consensus 194 ~l~~~~~~~G~~i~~~~~V~~i~~~~~~v-V~-~~g~~~~ad~Vv~a~~~~~~~~ll~~--~~~~~~~~~~~~~~~~~~~ 269 (421)
T 3nrn_A 194 ELERIIMENKGKILTRKEVVEINIEEKKV-YT-RDNEEYSFDVAISNVGVRETVKLIGR--DYFDRDYLKQVDSIEPSEG 269 (421)
T ss_dssp HHHHHHHTTTCEEESSCCEEEEETTTTEE-EE-TTCCEEECSEEEECSCHHHHHHHHCG--GGSCHHHHHHHHTCCCCCE
T ss_pred HHHHHHHHCCCEEEcCCeEEEEEEECCEE-EE-eCCcEEEeCEEEECCCHHHHHHhcCc--ccCCHHHHHHHhCCCCCce
Confidence 8853 88999999999999999888 74 56779999999999999988764321 3467777788888988888
Q ss_pred eEEEEEeCCCcccCCccceeec-CCCCc--e---eEeeeccCCCCceEEEEEechhhhHHHhcCCHHHHHHHHHHHHHHH
Q 010001 338 NKIIMHFDKVFWPNVEFLGVVS-DTSYG--C---SYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKI 411 (520)
Q Consensus 338 ~~v~l~~~~~~~~~~~~~g~~~-~~~~~--~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~ 411 (520)
.++++.++++..+. .+++. ++... . +.......++++..+.+.... ...+.++..+.++++|+++
T Consensus 270 ~~v~l~~~~~~~~~---~~~~~~~~~~~~~i~~~s~~~p~~ap~G~~~~~~~~~~------~~~~~~~~~~~~~~~L~~~ 340 (421)
T 3nrn_A 270 IKFNLAVPGEPRIG---NTIVFTPGLMINGFNEPSALDKSLAREGYTLIMAHMAL------KNGNVKKAIEKGWEELLEI 340 (421)
T ss_dssp EEEEEEEESSCSSC---SSEEECTTSSSCEEECGGGTCGGGSCTTEEEEEEEEEC------TTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCcccC---CeEEEcCCcceeeEeccCCCCCCcCCCCceEEEEEEee------ccccHHHHHHHHHHHHHHH
Confidence 88999998764332 12222 21111 0 111112234566555554321 1233456699999999999
Q ss_pred CCCCCCCcEEEeccCCCCCCCCccccCCCCCCChhHHHHhcCCCCcEEEeeccccCcCCccchHHHHHHHHHHHHH
Q 010001 412 LPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDC 487 (520)
Q Consensus 412 ~~~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i 487 (520)
+| ......+.+|... .+.+. ..++. + .+ .++ +|||+|||++.+.+.-.||||+.||.+||+.|
T Consensus 341 ~p---~~~~~~~~~~~~~---~p~~~-~~~~~--~-~~--~~~-~gl~laGd~~~~~~g~~~~ga~~sg~~aA~~l 403 (421)
T 3nrn_A 341 FP---EGEPLLAQVYRDG---NPVNR-TRAGL--H-IE--WPL-NEVLVVGDGYRPPGGIEVDGIALGVMKALEKL 403 (421)
T ss_dssp CT---TCEEEEEEEC-------------------C-CC--CCC-SSEEECSTTCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred cC---CCeEEEeeeccCC---CCccc-ccCCC--C-CC--CCC-CcEEEECCcccCCCceeeehHHHHHHHHHHHh
Confidence 99 2334456777542 12221 01111 1 11 577 99999999998752225699999999999976
No 24
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=99.97 E-value=3.1e-30 Score=258.62 Aligned_cols=403 Identities=17% Similarity=0.149 Sum_probs=221.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCC-CcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcCCCe
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G-~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (520)
.+++||+|||||++||+||++|+++| ++|+|+|+++++||+++|...+|+.+|.|++++. ..+..+.++++++|++.
T Consensus 4 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~~~G~~~d~G~~~~~--~~~~~~~~l~~~~g~~~ 81 (424)
T 2b9w_A 4 SKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMGV--PSYDTIQEIMDRTGDKV 81 (424)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCEETTEECCSSCCCBC--TTCHHHHHHHHHHCCCC
T ss_pred CCCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccCCCCcccccCceeec--CCcHHHHHHHHHhCCcc
Confidence 35689999999999999999999999 9999999999999999998889999999999875 23467899999999875
Q ss_pred eeecCCCccccccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhcCccccccccc
Q 010001 105 YRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRFFEHV 184 (520)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (520)
........+.+.++.. .... .. +... ......+.++............ ....+...
T Consensus 82 ~~~~~~~~~~~~~g~~--~~~~--~~--~~~~-~~~~~~~~~l~~~~~~~~~~~~-----------------~~~~~~~~ 137 (424)
T 2b9w_A 82 DGPKLRREFLHEDGEI--YVPE--KD--PVRG-PQVMAAVQKLGQLLATKYQGYD-----------------ANGHYNKV 137 (424)
T ss_dssp CSCCCCEEEECTTSCE--ECGG--GC--TTHH-HHHHHHHHHHHHHHHTTTTTTT-----------------SSSSSSCC
T ss_pred ccccccceeEcCCCCE--eccc--cC--cccc-hhHHHHHHHHHHHHhhhhhhcc-----------------cccchhhh
Confidence 4322222122211110 0000 00 0110 0011111111111110000000 00000000
Q ss_pred cCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh-hhhcCCcccccccccCcc-------ccccCCccccccC
Q 010001 185 SSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRME-GWFAADAETISLKSWDKE-------ELLPGGHGLMVRG 256 (520)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~G 256 (520)
. ......+.++++ +.+++ .+.+.+..++. ..++ ++..+++..+... ....++...+.+|
T Consensus 138 ~-----~~~~~s~~~~l~------~~~~~-~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g 204 (424)
T 2b9w_A 138 H-----EDLMLPFDEFLA------LNGCE-AARDLWINPFTAFGYG-HFDNVPAAYVLKYLDFVTMMSFAKGDLWTWADG 204 (424)
T ss_dssp C-----GGGGSBHHHHHH------HTTCG-GGHHHHTTTTCCCCCC-CTTTSBHHHHHHHSCHHHHHHHHHTCCBCCTTC
T ss_pred h-----hhhccCHHHHHH------hhCcH-HHHHHHHHHHHhhccC-ChHhcCHHHHHHhhhHhhhhcccCCceEEeCCh
Confidence 0 000111222222 22222 23333333332 2222 3333333221100 0123455678899
Q ss_pred hHHHHHHHhc--cCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCchHHHHHHhhcCC
Q 010001 257 YLPVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGV 334 (520)
Q Consensus 257 ~~~l~~~L~~--gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~l~~~~~~~~~~~~~ 334 (520)
++.++++|.+ +.+|+++++|++|+.+++++.|++.+| ++.||+||+|+|+..+..+ .+++|.. .+.+..+.+
T Consensus 205 ~~~l~~~l~~~l~~~v~~~~~V~~i~~~~~~v~v~~~~g-~~~ad~Vv~a~~~~~~~~~----l~~~~~~-~~~~~~~~~ 278 (424)
T 2b9w_A 205 TQAMFEHLNATLEHPAERNVDITRITREDGKVHIHTTDW-DRESDVLVLTVPLEKFLDY----SDADDDE-REYFSKIIH 278 (424)
T ss_dssp HHHHHHHHHHHSSSCCBCSCCEEEEECCTTCEEEEESSC-EEEESEEEECSCHHHHTTS----BCCCHHH-HHHHTTCEE
T ss_pred HHHHHHHHHHhhcceEEcCCEEEEEEEECCEEEEEECCC-eEEcCEEEECCCHHHHhhc----cCCCHHH-HHHHhcCCc
Confidence 9999999975 448999999999999988899999888 5999999999999986543 2334432 334555555
Q ss_pred cceeEEEEEeCCCcccCCccceeecCC----CCceeEeeeccCC-CCceEEEEEechhhhHHHhcCCHHHHHHHHHHHHH
Q 010001 335 GIENKIIMHFDKVFWPNVEFLGVVSDT----SYGCSYFLNLHKA-TGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLK 409 (520)
Q Consensus 335 ~~~~~v~l~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~ 409 (520)
.+.. +.+.+...+ +. +.+++... ......+.....+ ....+++.|..+. ...+...+++++++.++++|+
T Consensus 279 ~~~~-~~~~~~~~~-~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~v~~~l~ 353 (424)
T 2b9w_A 279 QQYM-VDACLVKEY-PT--ISGYVPDNMRPERLGHVMVYYHRWADDPHQIITTYLLRN-HPDYADKTQEECRQMVLDDME 353 (424)
T ss_dssp EEEE-EEEEEESSC-CS--SEEECGGGGSGGGTTSCCEEEECCTTCTTSCEEEEEECC-BTTBCCCCHHHHHHHHHHHHH
T ss_pred ceeE-EEEEEeccC-Cc--ccccccCCCCCcCCCcceEEeeecCCCCceEEEEEeccC-CCcccccChHHHHHHHHHHHH
Confidence 3322 222222222 11 22222111 0000111111112 2234556665543 244567789999999999999
Q ss_pred HHCCCCCCCcEEEeccCCCCCC-CCccccCCCCCCChhHHHHhcCCCCcEEEeeccccCcCCccchHHHHHHHHHHHHHH
Q 010001 410 KILPDASSPIQYLVSHWGTDAN-SLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 488 (520)
Q Consensus 410 ~~~~~~~~~~~~~~~~w~~~~~-~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~ 488 (520)
++.+.. +..+....|...+. ....+. .|. ..+....++.+|+|+||+++.. |++|+|+.||.++|++|+
T Consensus 354 ~l~~~~--~~~~~~~~w~~~p~~~~~~~~---~G~--~~~~~~~~~~~~l~~aG~~~~~---g~~e~a~~Sg~~aA~~~l 423 (424)
T 2b9w_A 354 TFGHPV--EKIIEEQTWYYFPHVSSEDYK---AGW--YEKVEGMQGRRNTFYAGEIMSF---GNFDEVCHYSKDLVTRFF 423 (424)
T ss_dssp HTTCCE--EEEEEEEEEEEEEECCHHHHH---TTH--HHHHHHTTTGGGEEECSGGGSC---SSHHHHHHHHHHHHHHHT
T ss_pred HcCCcc--cccccccceeeeeccCHHHHh---ccH--HHHHHHHhCCCCceEecccccc---ccHHHHHHHHHHHHHHhc
Confidence 954321 11122335532111 000111 111 1122234556899999998764 899999999999999864
No 25
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=99.96 E-value=4.6e-28 Score=235.15 Aligned_cols=319 Identities=16% Similarity=0.169 Sum_probs=216.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcCCC-eee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLP-LYR 106 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~-~~~ 106 (520)
++||+|||||++||++|+.|+++|++|+|||+++.+||++.+....+..+|.|..++.. ....+.++++.+... ...
T Consensus 2 ~~dV~IIGaG~~Gl~~A~~L~~~G~~V~vlE~~~~~gg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 79 (336)
T 1yvv_A 2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFTA--RDRRFATAVKQWQAQGHVA 79 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEETTEEEECSCCCBCC--CSHHHHHHHHHHHHHTSEE
T ss_pred CceEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCcccceeEecCCCeEecCCCeEec--CCHHHHHHHHHHHhCCCee
Confidence 57999999999999999999999999999999999999999877778888888776541 112222333221110 000
Q ss_pred ecCCCccccccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhcCccccccccccC
Q 010001 107 TSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRFFEHVSS 186 (520)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (520)
..... ....
T Consensus 80 ~~~~~----------~~~~------------------------------------------------------------- 88 (336)
T 1yvv_A 80 EWTPL----------LYNF------------------------------------------------------------- 88 (336)
T ss_dssp EECCC----------EEEE-------------------------------------------------------------
T ss_pred ecccc----------ceec-------------------------------------------------------------
Confidence 00000 0000
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCcccccccccCccccccCCccccccChHHHHHHHhc
Q 010001 187 SLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAK 266 (520)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~l~~~L~~ 266 (520)
... .+.. ............|+..+.++|.+
T Consensus 89 --------------------------------------------~~~-----~~~~-~~~~~~~~~~~~~~~~l~~~l~~ 118 (336)
T 1yvv_A 89 --------------------------------------------HAG-----RLSP-SPDEQVRWVGKPGMSAITRAMRG 118 (336)
T ss_dssp --------------------------------------------SSS-----BCCC-CCTTSCEEEESSCTHHHHHHHHT
T ss_pred --------------------------------------------cCc-----cccc-CCCCCccEEcCccHHHHHHHHHc
Confidence 000 0000 00000112234678999999999
Q ss_pred cCCeecCceeEEEEEeCCeEEEEEcCCcEEE-cCEEEEecChhhhhcCcccccCCCchHHHHHHhhcCCcceeEEEEEeC
Q 010001 267 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFV-ADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFD 345 (520)
Q Consensus 267 gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~-ad~VI~a~p~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~ 345 (520)
|++|+++++|++|+.++++|.|++.+|+... +|.||.|+|...+.+++. + . +.....+..+.+.+..++.+.|+
T Consensus 119 g~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~a~~vV~a~g~~~~~~~~~-~---~-~~l~~~~~~~~~~~~~~~~~~~~ 193 (336)
T 1yvv_A 119 DMPVSFSCRITEVFRGEEHWNLLDAEGQNHGPFSHVIIATPAPQASTLLA-A---A-PKLASVVAGVKMDPTWAVALAFE 193 (336)
T ss_dssp TCCEECSCCEEEEEECSSCEEEEETTSCEEEEESEEEECSCHHHHGGGGT-T---C-HHHHHHHTTCCEEEEEEEEEEES
T ss_pred cCcEEecCEEEEEEEeCCEEEEEeCCCcCccccCEEEEcCCHHHHHHhhc-c---C-HHHHHHHhhcCccceeEEEEEec
Confidence 9999999999999999999999999997664 999999999998766432 2 2 23456678888988899999999
Q ss_pred CCcccCCccceeecCCCCceeEeeeccCCC--Cc-eEEEEEechhhhHHHhcCCHHHHHHHHHHHHHHHCCC-CCCCcEE
Q 010001 346 KVFWPNVEFLGVVSDTSYGCSYFLNLHKAT--GH-CVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD-ASSPIQY 421 (520)
Q Consensus 346 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~-~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~~~-~~~~~~~ 421 (520)
.++|... .+....+......+.+...+. +. ..++.+..+.....+.+++++++.+.+.+.+.++++. ...|...
T Consensus 194 ~~~~~~~--~~~~~~~~~~~~l~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~~~~~p~~~ 271 (336)
T 1yvv_A 194 TPLQTPM--QGCFVQDSPLDWLARNRSKPERDDTLDTWILHATSQWSRQNLDASREQVIEHLHGAFAELIDCTMPAPVFS 271 (336)
T ss_dssp SCCSCCC--CEEEECSSSEEEEEEGGGSTTCCCSSEEEEEEECHHHHHHTTTSCHHHHHHHHHHHHHTTCSSCCCCCSEE
T ss_pred CCCCCCC--CeEEeCCCceeEEEecCcCCCCCCCCcEEEEEeCHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCCcEE
Confidence 8877543 233333332223333222222 22 4567777777788888999999999999999999974 4457777
Q ss_pred EeccCCCCCCCCccccCCCCCCChhHHHHhcCCCCcEEEeeccccCcCCccchHHHHHHHHHHHHHHHH
Q 010001 422 LVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 490 (520)
Q Consensus 422 ~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~~ 490 (520)
.+.+|.. ..+.+... .. ....+.++|++|||++.. +++++|+.||.++|+.|.+.
T Consensus 272 ~~~rw~~---a~~~~~~~---~~-----~~~~~~~rl~laGDa~~g---~gv~~a~~sg~~lA~~l~~~ 326 (336)
T 1yvv_A 272 LAHRWLY---ARPAGAHE---WG-----ALSDADLGIYVCGDWCLS---GRVEGAWLSGQEAARRLLEH 326 (336)
T ss_dssp EEEEEEE---EEESSCCC---CS-----CEEETTTTEEECCGGGTT---SSHHHHHHHHHHHHHHHHHH
T ss_pred EccccCc---cCCCCCCC---CC-----eeecCCCCEEEEecCCCC---CCHHHHHHHHHHHHHHHHHH
Confidence 8899953 22222211 10 122345899999999876 69999999999999987665
No 26
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=99.94 E-value=7.2e-27 Score=230.91 Aligned_cols=254 Identities=15% Similarity=0.170 Sum_probs=155.2
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhC-CCcEEEEeccCCCCceeeecCC--CCccc-ccccceecCCCCCCchHHHHHHc
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRDRVGGRVHTDYS--FGFPV-DLGASWLHGVCQENPLAPVISRL 100 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~-G~~V~vlE~~~~~GG~~~s~~~--~g~~~-d~G~~~~~~~~~~~~~~~l~~~l 100 (520)
|..++||+|||||++||+||+.|+++ |++|+|+|+++++||++++... +|+.+ +.|+++++. .+..+.++++++
T Consensus 4 m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~--~~~~~~~~~~~~ 81 (399)
T 1v0j_A 4 MTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAHLFHT--SNKRVWDYVRQF 81 (399)
T ss_dssp CCCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEEECTTTCCEEETTSCCCEEE--SCHHHHHHHTTT
T ss_pred ccccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeeccccCCCEEEEeCCCcEEcC--CcHHHHHHHHHh
Confidence 44579999999999999999999999 9999999999999999999877 68887 599999873 356789999999
Q ss_pred CCCeeeecCCCccccccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhcCccccc
Q 010001 101 GLPLYRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRF 180 (520)
Q Consensus 101 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (520)
|+- .... .....+.++ ....+|... ..+...+.. ..........+........
T Consensus 82 g~~-~~~~-~~~~~~~~G---------~~~~~p~~~-~~~~~l~~~-----------~~~~~~~~~~l~~~~~~~~---- 134 (399)
T 1v0j_A 82 TDF-TDYR-HRVFAMHNG---------QAYQFPMGL-GLVSQFFGK-----------YFTPEQARQLIAEQAAEID---- 134 (399)
T ss_dssp CCB-CCCC-CCEEEEETT---------EEEEESSSH-HHHHHHHTS-----------CCCHHHHHHHHHHHGGGSC----
T ss_pred hhh-hccc-cceEEEECC---------EEEeCCCCH-HHHHHHhcc-----------cCCHHHHHHHHHHHhhccC----
Confidence 872 1111 111111111 111112111 000000000 0000000001111111000
Q ss_pred cccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-hhhhcCCcccccccccC---ccc-----cccCCc-
Q 010001 181 FEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWD---KEE-----LLPGGH- 250 (520)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~-----~~~~g~- 250 (520)
.....+ +.+++ ...+++.+.+.++.++ ...++.++..+++.... ... ++...+
T Consensus 135 ------~~~~~s----~~e~l-------~~~~g~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~ 197 (399)
T 1v0j_A 135 ------TADAQN----LEEKA-------ISLIGRPLYEAFVKGYTAKQWQTDPKELPAANITRLPVRYTFDNRYFSDTYE 197 (399)
T ss_dssp ------TTC--------CCHH-------HHHHCHHHHHHHTHHHHHHHHTSCGGGSCGGGCSCCCCCSSSCCCSCCCSEE
T ss_pred ------CCCccc----HHHHH-------HHHHhHHHHHHHHHHHHHhhcCCChhhcChHhhhcceeEeccccchhhhhhc
Confidence 000111 11122 2356777777777765 56788888888766542 111 112223
Q ss_pred cccccChHHHHHHHhc--cCCeecCceeEEEEEeCCeEEEEEcCCcEE-EcCEEEEecChhhhhcCcccccCCCchHHHH
Q 010001 251 GLMVRGYLPVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTF-VADAVVVAVPLGVLKARTIKFEPRLPDWKEA 327 (520)
Q Consensus 251 ~~~~~G~~~l~~~L~~--gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~-~ad~VI~a~p~~~l~~l~~~~~~~l~~~~~~ 327 (520)
.++.+|++.++++|++ |++|++|++|++|... | + ++ .||+||+|+|++.+.++
T Consensus 198 ~~p~gG~~~l~~~l~~~~g~~I~l~~~V~~I~~~---v-----~--~~~~aD~VI~t~p~~~l~~~-------------- 253 (399)
T 1v0j_A 198 GLPTDGYTAWLQNMAADHRIEVRLNTDWFDVRGQ---L-----R--PGSPAAPVVYTGPLDRYFDY-------------- 253 (399)
T ss_dssp ECBTTHHHHHHHHHTCSTTEEEECSCCHHHHHHH---H-----T--TTSTTCCEEECSCHHHHTTT--------------
T ss_pred ccccccHHHHHHHHHhcCCeEEEECCchhhhhhh---h-----h--hcccCCEEEECCcHHHHHhh--------------
Confidence 2789999999999985 5689999999998653 2 1 34 69999999999987643
Q ss_pred HHhhcCCcceeEEEEEeCCCc
Q 010001 328 AIDDLGVGIENKIIMHFDKVF 348 (520)
Q Consensus 328 ~~~~~~~~~~~~v~l~~~~~~ 348 (520)
.+..++|.+...+.+.++.+.
T Consensus 254 ~l~~l~y~s~~~~~~~~~~~~ 274 (399)
T 1v0j_A 254 AEGRLGWRTLDFEVEVLPIGD 274 (399)
T ss_dssp TTCCCCEEEEEEEEEEESSSC
T ss_pred hhCCCCcceEEEEEEEEcccc
Confidence 134667777677777777643
No 27
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=99.94 E-value=4e-26 Score=222.76 Aligned_cols=243 Identities=16% Similarity=0.217 Sum_probs=157.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCCcccc-cccceecCCCCCCchHHHHHHcCCCeee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVD-LGASWLHGVCQENPLAPVISRLGLPLYR 106 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d-~G~~~~~~~~~~~~~~~l~~~lg~~~~~ 106 (520)
++||+|||||++||+||+.|+++|++|+|+|+++++||++.+...+|+.+| .|+++++.. +..+.+++++++... +
T Consensus 1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~~G~~~~~~~--~~~~~~~~~~l~~~~-~ 77 (367)
T 1i8t_A 1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTN--DKYIWDYVNDLVEFN-R 77 (367)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEETTEEEETTSCCCEEES--CHHHHHHHHTTSCBC-C
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEeeccCCceeeccCCceecCC--CHHHHHHHHHhhhhh-h
Confidence 369999999999999999999999999999999999999999877899885 999998743 456788888887532 1
Q ss_pred ecCCCccccccCccceeeecCCCCccCHHHHHHHHHH--------HHHHHHHHHHhhhcCCCCCcHHHHHHHHHhcCccc
Q 010001 107 TSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEA--------FESILKETDKVREEHDEDMSIQRAISIVFDRRPEL 178 (520)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (520)
..........+. ...+|... ..+... +.+++....... ....+.++.+++
T Consensus 78 ~~~~~~~~~~g~----------~~~~p~~~-~~~~~l~~~~~~~~~~~~l~~~~~~~-~~~~~~s~~~~~---------- 135 (367)
T 1i8t_A 78 FTNSPLAIYKDK----------LFNLPFNM-NTFHQMWGVKDPQEAQNIINAQKKKY-GDKVPENLEEQA---------- 135 (367)
T ss_dssp CCCCCEEEETTE----------EEESSBSH-HHHHHHHCCCCHHHHHHHHHHHTTTT-CCCCCCSHHHHH----------
T ss_pred ccccceEEECCe----------EEEcCCCH-HHHHHHhccCCHHHHHHHHHHHhhcc-CCCCCccHHHHH----------
Confidence 111111111111 01111111 011110 111111110000 001112222222
Q ss_pred cccccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-hhhhcCCcccccccccCcc--------ccccCC
Q 010001 179 RFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKE--------ELLPGG 249 (520)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------~~~~~g 249 (520)
...+++.+.+.++.++ ...++.++.++++..+... .++.+.
T Consensus 136 ------------------------------~~~~g~~~~~~~~~p~~~~~~~~~~~~lsa~~~~~l~~~~~~~~~~~~~~ 185 (367)
T 1i8t_A 136 ------------------------------ISLVGEDLYQALIKGYTEKQWGRSAKELPAFIIKRIPVRFTFDNNYFSDR 185 (367)
T ss_dssp ------------------------------HHHHHHHHHHHHTHHHHHHHHSSCGGGSCTTSSCCCCBCSSSCCCSCCCS
T ss_pred ------------------------------HHHHhHHHHHHHHHHHHhhhhCCChHHcCHHHHhhceeeeccccccccch
Confidence 3347788888888776 6688889988886654210 112233
Q ss_pred cc-ccccChHHHHHHHhccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCchHHHHH
Q 010001 250 HG-LMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAA 328 (520)
Q Consensus 250 ~~-~~~~G~~~l~~~L~~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~l~~~~~~~ 328 (520)
+. ++++|++.++++|++|++|++|++|.+|... | ++.+|+||+|+|++.+.++ .
T Consensus 186 ~~~~p~gG~~~l~~~l~~g~~i~l~~~V~~i~~~---v--------~~~~D~VV~a~p~~~~~~~--------------~ 240 (367)
T 1i8t_A 186 YQGIPVGGYTKLIEKMLEGVDVKLGIDFLKDKDS---L--------ASKAHRIIYTGPIDQYFDY--------------R 240 (367)
T ss_dssp EEECBTTCHHHHHHHHHTTSEEECSCCGGGSHHH---H--------HTTEEEEEECSCHHHHTTT--------------T
T ss_pred hhcccCCCHHHHHHHHhcCCEEEeCCceeeechh---h--------hccCCEEEEeccHHHHHHH--------------h
Confidence 32 8899999999999999999999999988631 2 1358999999999986532 1
Q ss_pred HhhcCCcceeEEEEEeCCCccc
Q 010001 329 IDDLGVGIENKIIMHFDKVFWP 350 (520)
Q Consensus 329 ~~~~~~~~~~~v~l~~~~~~~~ 350 (520)
+..++|.+...+.+.++...++
T Consensus 241 l~~l~y~s~~~v~~~~d~~~~~ 262 (367)
T 1i8t_A 241 FGALEYRSLKFETERHEFPNFQ 262 (367)
T ss_dssp TCCCCEEEEEEEEEEESSSCSS
T ss_pred hCCCCCceEEEEEEEeccccCC
Confidence 4467787777788888876554
No 28
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=99.93 E-value=6.7e-25 Score=215.33 Aligned_cols=242 Identities=13% Similarity=0.202 Sum_probs=152.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCC--CCccc-ccccceecCCCCCCchHHHHHHcCCCe
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS--FGFPV-DLGASWLHGVCQENPLAPVISRLGLPL 104 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~--~g~~~-d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (520)
++||+|||||++||++|+.|+++|++|+|+|+++++||++++... .|+.+ |.|+|+++. .+..+.+++++++..
T Consensus 3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~--~~~~~~~~~~~l~~~- 79 (384)
T 2bi7_A 3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHT--DNETVWNYVNKHAEM- 79 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEE--SCHHHHHHHHTTSCE-
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCccccccccCCCceEeeCCceEECC--CCHHHHHHHHHHhhh-
Confidence 479999999999999999999999999999999999999999776 78876 999999874 456788999999862
Q ss_pred eeecCCCccccccCccceeeecCCCCccCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhcCccccccccc
Q 010001 105 YRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRFFEHV 184 (520)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (520)
.+......+.+++.. ..+|.... .+...+. ...........+.......
T Consensus 80 ~~~~~~~~~~~~g~~----------~~~P~~~~-~~~~l~~-----------~~~~~~~~~~~l~~~~~~~--------- 128 (384)
T 2bi7_A 80 MPYVNRVKATVNGQV----------FSLPINLH-TINQFFS-----------KTCSPDEARALIAEKGDST--------- 128 (384)
T ss_dssp EECCCCEEEEETTEE----------EEESCCHH-HHHHHTT-----------CCCCHHHHHHHHHHHSCCS---------
T ss_pred cccccceEEEECCEE----------EECCCChh-HHHHHhc-----------ccCCHHHHHHHHHHhhhcc---------
Confidence 221111111111111 11111110 0000000 0000000000111100000
Q ss_pred cCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-hhhhcCCcccccccccC--------ccccccCCcc-ccc
Q 010001 185 SSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWD--------KEELLPGGHG-LMV 254 (520)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~g~~-~~~ 254 (520)
.....++.+. + ...+++.+.+.++.++ ...++.++.+++..... ...++.+.+. ++.
T Consensus 129 --~~~~~sl~e~----~-------~~~~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~r~~~~~~~~~~~~~~~~~~~p~ 195 (384)
T 2bi7_A 129 --IADPQTFEEE----A-------LRFIGKELYEAFFKGYTIKQWGMQPSELPASILKRLPVRFNYDDNYFNHKFQGMPK 195 (384)
T ss_dssp --CSSCCBHHHH----H-------HHHHCHHHHHHHTHHHHHHHHSSCGGGSBGGGCCSCCCCSSSCCCSCCCSEEEEET
T ss_pred --CCCCcCHHHH----H-------HHhhcHHHHHHHHHHHHHHHhCCCHHHhCHHHHhccccccccccccccccccEEEC
Confidence 0011122221 1 2336778888887765 66888888888766542 0112234443 889
Q ss_pred cChHHHHHHHhc--cCCeecCceeE-EEEEeCCeEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCchHHHHHHhh
Q 010001 255 RGYLPVINTLAK--GLDIRLGHRVT-KITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDD 331 (520)
Q Consensus 255 ~G~~~l~~~L~~--gv~i~~~~~V~-~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~l~~~~~~~~~~ 331 (520)
+|++.++++|++ |++|+++++|. +|.. .||+||+|+|++.+.++. +..
T Consensus 196 gG~~~l~~~l~~~~g~~I~l~~~V~~~i~~---------------~~d~VI~a~p~~~~~~~~--------------lg~ 246 (384)
T 2bi7_A 196 CGYTQMIKSILNHENIKVDLQREFIVEERT---------------HYDHVFYSGPLDAFYGYQ--------------YGR 246 (384)
T ss_dssp THHHHHHHHHHCSTTEEEEESCCCCGGGGG---------------GSSEEEECSCHHHHTTTT--------------TCC
T ss_pred cCHHHHHHHHHhcCCCEEEECCeeehhhhc---------------cCCEEEEcCCHHHHHHhh--------------cCC
Confidence 999999999986 67899999998 7753 299999999999876531 345
Q ss_pred cCCcceeEEEEEeC
Q 010001 332 LGVGIENKIIMHFD 345 (520)
Q Consensus 332 ~~~~~~~~v~l~~~ 345 (520)
++|.+...+.+.++
T Consensus 247 l~y~s~~~v~~~~d 260 (384)
T 2bi7_A 247 LGYRTLDFKKFTYQ 260 (384)
T ss_dssp CCEEEEEEEEEEEE
T ss_pred CCcceEEEEEEEeC
Confidence 77877777777776
No 29
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*
Probab=99.92 E-value=4.6e-24 Score=207.60 Aligned_cols=340 Identities=13% Similarity=0.173 Sum_probs=206.5
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecC-CCCcc-cccccceecCCCCCCchHHHHHHcCC
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY-SFGFP-VDLGASWLHGVCQENPLAPVISRLGL 102 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~~g~~-~d~G~~~~~~~~~~~~~~~l~~~lg~ 102 (520)
....+||+|||||++||+||+.|+++|++|+|+|+++++||++.+.. .+|+. +|.|+|+++. ....+.+++++++.
T Consensus 26 ~~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~G~~~~~~G~~~~~~--~~~~~~~~~~~~~~ 103 (397)
T 3hdq_A 26 ESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAGVLIHPYGPHIFHT--NSKDVFEYLSRFTE 103 (397)
T ss_dssp CCCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCEECTTSCEECTTSCCCCEE--SCHHHHHHHHTSCC
T ss_pred cCCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccceeeccCCceEeecCCcccCC--ChHHHHHHHHHhhh
Confidence 34678999999999999999999999999999999999999999876 67876 5999999863 45678999999985
Q ss_pred CeeeecCCCccccccCccceeeecCCCCccCHHH--HHHHH------HHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhc
Q 010001 103 PLYRTSGDNSVLYDHDLESYALFDMDGNQVPQEL--VTKVG------EAFESILKETDKVREEHDEDMSIQRAISIVFDR 174 (520)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (520)
. .+.......++++.. ..+|... ...+. .....++. ........+.++.+++
T Consensus 104 ~-~~~~~~~~~~~~g~l----------~~lP~~~~~~~~l~~~~~~~~~~~~~l~---~~~~~~~~~~s~~e~~------ 163 (397)
T 3hdq_A 104 W-RPYQHRVLASVDGQL----------LPIPINLDTVNRLYGLNLTSFQVEEFFA---SVAEKVEQVRTSEDVV------ 163 (397)
T ss_dssp E-EECCCBEEEEETTEE----------EEESCCHHHHHHHHTCCCCHHHHHHHHH---HHCCCCSSCCBHHHHH------
T ss_pred c-ccccccceEEECCEE----------EEcCCChHHHHHhhccCCCHHHHHHHHh---hcccCCCCCcCHHHHH------
Confidence 2 211111111111111 1112111 10100 00011111 1111122334454444
Q ss_pred CccccccccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-hhhhcCCcccccccccCcc--------cc
Q 010001 175 RPELRFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKE--------EL 245 (520)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------~~ 245 (520)
.+.+++++.+.++.++ .+.|+.+++++++.++... .+
T Consensus 164 ----------------------------------~~~~G~~~~e~~~~py~~k~~~~~~~~Lsa~~~~Rvp~~~~~d~~y 209 (397)
T 3hdq_A 164 ----------------------------------VSKVGRDLYNKFFRGYTRKQWGLDPSELDASVTARVPTRTNRDNRY 209 (397)
T ss_dssp ----------------------------------HHHHHHHHHHHHTHHHHHHHHSSCGGGSBTTTGGGSCCCSSCCCBS
T ss_pred ----------------------------------HHhcCHHHHHHHHHHHhCchhCCCHHHHHHHHHHhcCcccccCccc
Confidence 4567888888888887 6789999999987654311 11
Q ss_pred ccCCc-cccccChHHHHHHHhc--cCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCc
Q 010001 246 LPGGH-GLMVRGYLPVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLP 322 (520)
Q Consensus 246 ~~~g~-~~~~~G~~~l~~~L~~--gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~l~ 322 (520)
+.+.+ .++.+|+..++++|++ |++|++|++|.++ +.++.+|+||+|+|++.+.+.
T Consensus 210 f~~~~qg~P~gGy~~l~e~l~~~~g~~V~l~~~v~~~-------------~~~~~~d~vI~T~P~d~~~~~--------- 267 (397)
T 3hdq_A 210 FADTYQAMPLHGYTRMFQNMLSSPNIKVMLNTDYREI-------------ADFIPFQHMIYTGPVDAFFDF--------- 267 (397)
T ss_dssp CCCSEEEEETTCHHHHHHHHTCSTTEEEEESCCGGGT-------------TTTSCEEEEEECSCHHHHTTT---------
T ss_pred hhhhheeccCCCHHHHHHHHHhccCCEEEECCeEEec-------------cccccCCEEEEcCCHHHHHHH---------
Confidence 23333 3689999999999986 8899999999732 335679999999999886321
Q ss_pred hHHHHHHhhcCCcceeEEEEEeCCCcccCCccceeecCCCCce-eEeeec-cCCCCceEEEEEechhhhHHHhcCCHHHH
Q 010001 323 DWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGC-SYFLNL-HKATGHCVLVYMPAGQLARDIEKMSDEAA 400 (520)
Q Consensus 323 ~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~ee~ 400 (520)
....+.|.+...+.+.++...+....+..+-..+.+.. ..+-+. ..+.++++++.-......++.....+++-
T Consensus 268 -----~~g~L~yrsl~~~~~~~~~~~~~~~~~vn~~d~~p~tRi~e~k~~~~~~~~~t~i~~Ey~~~~~~pyYpv~~~~~ 342 (397)
T 3hdq_A 268 -----CYGKLPYRSLEFRHETHDTEQLLPTGTVNYPNDYAYTRVSEFKHITGQRHHQTSVVYEYPRAEGDPYYPVPRPEN 342 (397)
T ss_dssp -----TTCCCCEEEEEEEEEEESSSCSCSSSEEECSSSSSCSEEEEHHHHHCCCCSSEEEEEEEEESSSSCCEECCSHHH
T ss_pred -----hcCCCCCceEEEEEEEeccccCCCCeEEEeCCCCcceEEEeecccCCCCCCCEEEEEEECCCCCccccccCchhH
Confidence 24467787888888888866554444443322221111 111111 11223444443332211111111111111
Q ss_pred HHHHHHHHHHHCCCCCCCcEEEeccCCCCCCCCccccCCCCCCChhHHHHhcCCCCcEEEeeccccCcCCccchHHHHHH
Q 010001 401 ANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTG 480 (520)
Q Consensus 401 ~~~~~~~L~~~~~~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egAi~SG 480 (520)
.+... .+.. .....+|++++|......|+ .|+.+|.+|
T Consensus 343 ~~~~~----------------------------------------~y~~-~a~~~~~v~~~GRlg~y~Y~-~md~~i~~a 380 (397)
T 3hdq_A 343 AELYK----------------------------------------KYEA-LADAAQDVTFVGRLATYRYY-NMDQVVAQA 380 (397)
T ss_dssp HHHHH----------------------------------------HHHH-HHHHCTTEEECSTTTTTCCC-CHHHHHHHH
T ss_pred HHHHH----------------------------------------HHHH-HHhcCCCEEEcccceEEEec-cHHHHHHHH
Confidence 11111 1111 11224699999999888885 899999999
Q ss_pred HHHHHHHHH
Q 010001 481 LMAAEDCRM 489 (520)
Q Consensus 481 ~~aA~~i~~ 489 (520)
..++++++.
T Consensus 381 l~~~~~~~~ 389 (397)
T 3hdq_A 381 LATFRRLQG 389 (397)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999998765
No 30
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=99.88 E-value=1.7e-21 Score=195.90 Aligned_cols=243 Identities=14% Similarity=0.128 Sum_probs=133.4
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCC-cc---------------cccccceecCCC
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFG-FP---------------VDLGASWLHGVC 88 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g-~~---------------~d~G~~~~~~~~ 88 (520)
+..++||+|||||++||+||+.|+++|++|+|+|+++++||+++|...+| +. ++.|.++..+..
T Consensus 8 ~~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~~~d~~~~~~~~~~~~~~~g~~~~~~l~ 87 (453)
T 2bcg_G 8 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLI 87 (453)
T ss_dssp CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCCCHHHHHHHHCCGGGCCEESS
T ss_pred ccccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccceeccchhceeccCCccccCcchhcccccceeeccc
Confidence 44678999999999999999999999999999999999999999976655 22 445555543322
Q ss_pred -----CCCchHHHHHHcCCCee--eecCCCccccccCccceeeecCCCCccCHHHHHH---------HHHHHHHHHHHHH
Q 010001 89 -----QENPLAPVISRLGLPLY--RTSGDNSVLYDHDLESYALFDMDGNQVPQELVTK---------VGEAFESILKETD 152 (520)
Q Consensus 89 -----~~~~~~~l~~~lg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 152 (520)
....+.++++++|+... ....+....+.++. . ..++...... ..+.+.+++....
T Consensus 88 P~~l~~~~~l~~ll~~lg~~~~l~~~~~~~~~~~~~g~-~--------~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 158 (453)
T 2bcg_G 88 PKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGK-I--------YKVPANEIEAISSPLMGIFEKRRMKKFLEWIS 158 (453)
T ss_dssp CCBEETTSHHHHHHHHHTGGGTCCEEECCCEEEEETTE-E--------EECCSSHHHHHHCTTSCHHHHHHHHHHHHHHH
T ss_pred cceeecCcHHHHHHHhcCCccceEEEEccceeEEeCCe-E--------EECCCChHHHHhhhccchhhHHHHHHHHHHHH
Confidence 34578899999998521 11111111111110 0 1111110000 1112333333332
Q ss_pred HhhhcCCCCCcHHHHHHHHHhcCccccccccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhh----hh
Q 010001 153 KVREEHDEDMSIQRAISIVFDRRPELRFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRMEG----WF 228 (520)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 228 (520)
...... |. .+ ..+ .....++. ++++ +...++.+.+.+...+.. .+
T Consensus 159 ~~~~~~-----------------p~-~~-~~~--~~~~~s~~----~~l~------~~~~~~~l~~~l~~~~~l~~~~~~ 207 (453)
T 2bcg_G 159 SYKEDD-----------------LS-TH-QGL--DLDKNTMD----EVYY------KFGLGNSTKEFIGHAMALWTNDDY 207 (453)
T ss_dssp HCBTTB-----------------GG-GS-TTC--CTTTSBHH----HHHH------HTTCCHHHHHHHHHHTSCCSSSGG
T ss_pred HhccCC-----------------ch-hh-hcc--ccccCCHH----HHHH------HhCCCHHHHHHHHHHHHhccCccc
Confidence 221100 00 00 000 01112222 2222 333344444433222110 01
Q ss_pred cCCcccccc---cccCc--cccccCCccccccChHHHHHHHh-----ccCCeecCceeEEEEEe--CCeE-EEEEcCCcE
Q 010001 229 AADAETISL---KSWDK--EELLPGGHGLMVRGYLPVINTLA-----KGLDIRLGHRVTKITRH--YIGV-KVTVEGGKT 295 (520)
Q Consensus 229 ~~~~~~~~~---~~~~~--~~~~~~g~~~~~~G~~~l~~~L~-----~gv~i~~~~~V~~I~~~--~~~v-~V~~~~g~~ 295 (520)
...+...++ ..+.. ..+..+.+.++.+|++.++++|+ .|++|+++++|++|..+ ++++ .|.+ +|++
T Consensus 208 ~~~p~~~~~~~~~~~~~s~~~~~~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~ 286 (453)
T 2bcg_G 208 LQQPARPSFERILLYCQSVARYGKSPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGT 286 (453)
T ss_dssp GGSBHHHHHHHHHHHHHHHHHHSSCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEE
T ss_pred cCCchHHHHHHHHHHHHHHHhhcCCceEeeCCCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeE
Confidence 111211111 00100 00112345588999999988885 38899999999999998 7775 5666 5778
Q ss_pred EEcCEEEEecChh
Q 010001 296 FVADAVVVAVPLG 308 (520)
Q Consensus 296 ~~ad~VI~a~p~~ 308 (520)
+.||+||+|++++
T Consensus 287 ~~ad~VV~a~~~~ 299 (453)
T 2bcg_G 287 FKAPLVIADPTYF 299 (453)
T ss_dssp EECSCEEECGGGC
T ss_pred EECCEEEECCCcc
Confidence 9999999999876
No 31
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=99.83 E-value=3.7e-18 Score=161.66 Aligned_cols=59 Identities=32% Similarity=0.549 Sum_probs=54.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCCcccccccceec
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLH 85 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~ 85 (520)
|.+||+|||||+|||+||+.|+++|++|+||||++.+||++++.+..+..+|.|+.++.
T Consensus 1 Mt~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~~~~~~~~~d~g~~~~~ 59 (336)
T 3kkj_A 1 MTVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFT 59 (336)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEETTEEEECSCCCBC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccccCCceeecCccccc
Confidence 46899999999999999999999999999999999999999998888999998887653
No 32
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=99.80 E-value=6e-19 Score=176.10 Aligned_cols=242 Identities=16% Similarity=0.142 Sum_probs=136.7
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecC-C--------------------CCcccccccce
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY-S--------------------FGFPVDLGASW 83 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~--------------------~g~~~d~G~~~ 83 (520)
|.+++||+|||||++||+||+.|+++|++|+|+|+++++||+++|.. . .++.+|.|+++
T Consensus 3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~~~~~~g~~~~~~~~~~~~~~~~g~~~~~d~gP~~ 82 (433)
T 1d5t_A 3 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKF 82 (433)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEECSHHHHHHHTTCTTCCCGGGCCGGGCCEESSCCB
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccccccHHHHHhhccCCCCChhHhcccCceEEccCcce
Confidence 45679999999999999999999999999999999999999999977 1 33567777776
Q ss_pred ecCCCCCCchHHHHHHcCCCee--eecCCCccccccCccceeeecCCCCccCHHHHHH---------HHHHHHHHHHHHH
Q 010001 84 LHGVCQENPLAPVISRLGLPLY--RTSGDNSVLYDHDLESYALFDMDGNQVPQELVTK---------VGEAFESILKETD 152 (520)
Q Consensus 84 ~~~~~~~~~~~~l~~~lg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 152 (520)
+. ....+.++++++|+... ....+....+.++. . ..++...... ..+.+.+++....
T Consensus 83 l~---~~~~l~~ll~~lgl~~~l~~~~~~~~~~~~~g~-~--------~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 150 (433)
T 1d5t_A 83 LM---ANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGK-I--------YKVPSTETEALASNLMGMFEKRRFRKFLVFVA 150 (433)
T ss_dssp EE---TTSHHHHHHHHHTGGGGCCEEECCEEEEEETTE-E--------EECCCSHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred ee---ccchHHHHHHHcCCccceEEEEeCceEEeeCCE-E--------EECCCCHHHHhhCcccChhhHHHHHHHHHHHH
Confidence 64 33578899999997521 11111111111110 0 0111111000 1112333333322
Q ss_pred HhhhcCCCCCcHHHHHHHHHhcCccccccccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCc
Q 010001 153 KVREEHDEDMSIQRAISIVFDRRPELRFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYLCRMEGWFAADA 232 (520)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (520)
++.... +. ..... .....++.+ +++ +...++.+.+.+...+..+.+..+
T Consensus 151 ~~~~~~-----------------p~--~~~~~--~~~~~s~~~----~l~------~~~~~~~l~~~l~~~~~~~~~~~~ 199 (433)
T 1d5t_A 151 NFDEND-----------------PK--TFEGV--DPQNTSMRD----VYR------KFDLGQDVIDFTGHALALYRTDDY 199 (433)
T ss_dssp HCCTTC-----------------GG--GGTTC--CTTTSBHHH----HHH------HTTCCHHHHHHHHHHTSCCSSSGG
T ss_pred hhcccC-----------------ch--hcccc--ccccCCHHH----HHH------HcCCCHHHHHHHHHHHHhccCCCc
Confidence 211100 00 00000 011122222 222 333444444433322222221122
Q ss_pred cccccc-------ccCc--cccccCCccccccChHHHHHHHhc-----cCCeecCceeEEEEEeCCeEEEEEcCCcEEEc
Q 010001 233 ETISLK-------SWDK--EELLPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVA 298 (520)
Q Consensus 233 ~~~~~~-------~~~~--~~~~~~g~~~~~~G~~~l~~~L~~-----gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~a 298 (520)
...+.. .+.. ..+..+...++.+|++.++++|.+ |++|+++++|++|..+++++.+...+|+++.|
T Consensus 200 ~~~p~~~~~~~~~~~~~s~~~~g~~~~~~p~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~~g~~~~a 279 (433)
T 1d5t_A 200 LDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARC 279 (433)
T ss_dssp GGSBSHHHHHHHHHHHHSCCSSSCCSEEEETTCTTHHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEETTEEEEC
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCcCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEECCeEEEC
Confidence 111111 1110 001122356888999999988853 88999999999999998887533357889999
Q ss_pred CEEEEecChhh
Q 010001 299 DAVVVAVPLGV 309 (520)
Q Consensus 299 d~VI~a~p~~~ 309 (520)
|+||+|+++..
T Consensus 280 d~VV~a~~~~~ 290 (433)
T 1d5t_A 280 KQLICDPSYVP 290 (433)
T ss_dssp SEEEECGGGCG
T ss_pred CEEEECCCCCc
Confidence 99999998764
No 33
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=99.80 E-value=2.1e-19 Score=178.12 Aligned_cols=238 Identities=12% Similarity=0.100 Sum_probs=136.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCC--------------------Cccccccccee
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF--------------------GFPVDLGASWL 84 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~--------------------g~~~d~G~~~~ 84 (520)
+.+.+||+|||||++|+++|+.|+++|++|+|+|+++++||++.+.... ++.+|++++.+
T Consensus 17 ~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s~~~~~l~~~~~~g~~~~~~~g~~R~y~iDL~P~~l 96 (475)
T 3p1w_A 17 QGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYGENRHWNVDLIPKFI 96 (475)
T ss_dssp CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCTTSCCCGGGCCGGGCCEESSCCBE
T ss_pred ccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccccchhhhhhhcccCCCcccccccccceEEeecCeEe
Confidence 4567999999999999999999999999999999999999999886422 46788888877
Q ss_pred cCCCCCCchHHHHHHcCCCe--eeecCCCccccccCc-----cceeeecCC--------CCccCHHHHHHHHHHHHHHHH
Q 010001 85 HGVCQENPLAPVISRLGLPL--YRTSGDNSVLYDHDL-----ESYALFDMD--------GNQVPQELVTKVGEAFESILK 149 (520)
Q Consensus 85 ~~~~~~~~~~~l~~~lg~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 149 (520)
. ....+.+++.++|+.. .+........+..+. ......... ...+... -+..+.+++.
T Consensus 97 ~---~~g~L~~lL~~~gv~~ylef~~~~~~y~~~~~~~~~~~~~g~~~~VPss~~e~~~~~lLs~~----eK~~l~kFL~ 169 (475)
T 3p1w_A 97 L---VGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEKFIHKVPATDMEALVSPLLSLM----EKNRCKNFYQ 169 (475)
T ss_dssp E---TTSHHHHHHHHTTCGGGSCEEECSEEEEEEEECCCSSSCCEEEEECCCSHHHHHTCTTSCHH----HHHHHHHHHH
T ss_pred e---cCcHHHHHHHHCCchheeEEEecCcceEEecCccccccCCCceEeCCCCHHHHhhccCCCHH----HHHHHHHHHH
Confidence 4 4567899999888852 111111111111000 000001000 0111111 1111333333
Q ss_pred HHHHhhhc--------CCCCCcHHHHHHHHHhcCccccccccccCCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 010001 150 ETDKVREE--------HDEDMSIQRAISIVFDRRPELRFFEHVSSSLPGISLQRKLLDLLKLVLTCRLEGLAHKVLQWYL 221 (520)
Q Consensus 150 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (520)
........ .....++.+++ + +.++++.+.+.+.
T Consensus 170 ~l~~~~~~~~~~~~~~~l~~~s~~e~l---------------------------------~------~~gls~~l~~fl~ 210 (475)
T 3p1w_A 170 YVSEWDANKRNTWDNLDPYKLTMLEIY---------------------------------K------HFNLCQLTIDFLG 210 (475)
T ss_dssp HHHHCCTTCGGGSTTCCTTTSBHHHHH---------------------------------H------HTTCCHHHHHHHH
T ss_pred HHHhhhhccchhhhcccccCCCHHHHH---------------------------------H------HcCCCHHHHHHHH
Confidence 33222110 00112333222 1 4455555555443
Q ss_pred HhhhhhhcCCcccccccccC---c------cccccCCccccccChHHHHHHHh-----ccCCeecCceeEEEEE-eCCe-
Q 010001 222 CRMEGWFAADAETISLKSWD---K------EELLPGGHGLMVRGYLPVINTLA-----KGLDIRLGHRVTKITR-HYIG- 285 (520)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~---~------~~~~~~g~~~~~~G~~~l~~~L~-----~gv~i~~~~~V~~I~~-~~~~- 285 (520)
..+......+....++.... . ..+......++.+|+..++++|. .|++|+++++|++|.. ++++
T Consensus 211 ~alaL~~~~~~~~~~a~~~l~ri~~y~~Sl~~yg~s~~~yp~gG~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v 290 (475)
T 3p1w_A 211 HAVALYLNDDYLKQPAYLTLERIKLYMQSISAFGKSPFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKV 290 (475)
T ss_dssp HHTSCCSSSGGGGSBHHHHHHHHHHHHHHHHHHSSCSEEEETTCTTHHHHHHHHHHHHC--CEESSCCEEEEEECTTSCE
T ss_pred HHHHhhcCCCcccCCHHHHHHHHHHHHHHHhhcCCCceEEECCCHHHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeE
Confidence 33222111111111111100 0 00112345688999998888885 3899999999999998 6666
Q ss_pred EEEEEcCCcEEEcCEEEEecChh
Q 010001 286 VKVTVEGGKTFVADAVVVAVPLG 308 (520)
Q Consensus 286 v~V~~~~g~~~~ad~VI~a~p~~ 308 (520)
+.|++.+|+++.||+||+|+...
T Consensus 291 ~gV~~~~G~~i~Ad~VI~a~~~~ 313 (475)
T 3p1w_A 291 CGIKSSDGEIAYCDKVICDPSYV 313 (475)
T ss_dssp EEEEETTSCEEEEEEEEECGGGC
T ss_pred EEEEECCCcEEECCEEEECCCcc
Confidence 47999999899999999998653
No 34
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=99.77 E-value=5.3e-18 Score=163.54 Aligned_cols=81 Identities=30% Similarity=0.414 Sum_probs=70.5
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc-CCCCceeeecC----------CCCcccccccceecCCCCCCch
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR-DRVGGRVHTDY----------SFGFPVDLGASWLHGVCQENPL 93 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~-~~~GG~~~s~~----------~~g~~~d~G~~~~~~~~~~~~~ 93 (520)
+..++||+|||||++||+||+.|+++|++|+|||++ +++||++.+.. ..++.+|.|+++++. .+..+
T Consensus 41 ~~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~~~~~~~~~~~~~~~~~e~G~~~~~~--~~~~~ 118 (376)
T 2e1m_A 41 PGPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAEAGAMRLPS--FHPLT 118 (376)
T ss_dssp CCSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEECCCTTSCCSSSSTTCCEESSCCCEET--TCHHH
T ss_pred CCCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeecccccccccccCCCcEEecCceeecc--hHHHH
Confidence 356789999999999999999999999999999999 99999999876 357899999998863 34568
Q ss_pred HHHHHHcCCCeeee
Q 010001 94 APVISRLGLPLYRT 107 (520)
Q Consensus 94 ~~l~~~lg~~~~~~ 107 (520)
.++++++|++....
T Consensus 119 ~~~~~~lGl~~~~~ 132 (376)
T 2e1m_A 119 LALIDKLGLKRRLF 132 (376)
T ss_dssp HHHHHHTTCCEEEE
T ss_pred HHHHHHcCCCccee
Confidence 89999999986543
No 35
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=99.61 E-value=1.2e-15 Score=131.66 Aligned_cols=112 Identities=19% Similarity=0.197 Sum_probs=99.6
Q ss_pred eEEEEEechhhhHHHhcCCHHHHHHHHHHHHHHHC-CCCCCCc-EE--EeccCCCCCCCCccccCCCCCCChhHHHHhcC
Q 010001 378 CVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL-PDASSPI-QY--LVSHWGTDANSLGSYSYDTVGKSHDLYERLRI 453 (520)
Q Consensus 378 ~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~-~~~~~~~-~~--~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~ 453 (520)
.+|..++.++.+..+..++++++++.++++|++++ +.. .+. .+ ..++|..++++.|+|.+..++......+.+++
T Consensus 37 ~~L~~~~~g~~A~~~~~l~~~e~~~~~l~~L~~~~g~~~-~~~~~~~~~~~~W~~dp~~~Ga~s~~~pg~~~~~~~~l~~ 115 (181)
T 2e1m_C 37 VVLAAYSWSDDAARWDSFDDAERYGYALENLQSVHGRRI-EVFYTGAGQTQSWLRDPYACGEAAVYTPHQMTAFHLDVVR 115 (181)
T ss_dssp EEEEEEEEHHHHHHHTTSCTTTTHHHHHHHHHHHHCGGG-GGTEEEEEEEEESSSCTTTSSSEECCCTTHHHHHHHHHHS
T ss_pred EEEEEEcCChHHHHHHcCCHHHHHHHHHHHHHHHhCCCc-HhhccCcceecccCCCCCCCCcccCcCCCchHHHHHHHhC
Confidence 57888888888999999999999999999999999 455 444 57 88999999999999988888887777889999
Q ss_pred CCCcEEEeeccccCcCCccchHHHHHHHHHHHHHHHHH
Q 010001 454 PVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 491 (520)
Q Consensus 454 p~~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~~l 491 (520)
|.++|||||++++. +.||||||+.||.+||++|+..+
T Consensus 116 p~grl~FAGe~ts~-~~g~~eGAl~SG~raA~~i~~~l 152 (181)
T 2e1m_C 116 PEGPVYFAGEHVSL-KHAWIEGAVETAVRAAIAVNEAP 152 (181)
T ss_dssp CBTTEEECSGGGTT-STTSHHHHHHHHHHHHHHHHTCC
T ss_pred CCCcEEEEEHHHcC-CccCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999996 77999999999999999988754
No 36
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=99.48 E-value=4.8e-12 Score=124.36 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=42.8
Q ss_pred HHHHHHHh-ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhh
Q 010001 258 LPVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 258 ~~l~~~L~-~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
..+.+.+. .|++|+++++|++|+.+++++.|++.+| +++||.||+|+..+.
T Consensus 158 ~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s 209 (381)
T 3nyc_A 158 QGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWC 209 (381)
T ss_dssp HHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGH
T ss_pred HHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhH
Confidence 34444443 4999999999999999999999999888 899999999998764
No 37
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*
Probab=99.47 E-value=3e-13 Score=137.98 Aligned_cols=57 Identities=12% Similarity=0.041 Sum_probs=49.1
Q ss_pred CCccccccChHHHHHHHh-----ccCCeecCceeEEEEEeC--CeE-EEEEcCCcEEEcCEEEEe
Q 010001 248 GGHGLMVRGYLPVINTLA-----KGLDIRLGHRVTKITRHY--IGV-KVTVEGGKTFVADAVVVA 304 (520)
Q Consensus 248 ~g~~~~~~G~~~l~~~L~-----~gv~i~~~~~V~~I~~~~--~~v-~V~~~~g~~~~ad~VI~a 304 (520)
+++.++.+|++.++++|. .|++|+++++|++|..++ +++ .|.+.+|+++.||+||++
T Consensus 368 sg~~yp~GG~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~ 432 (650)
T 1vg0_A 368 TPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIE 432 (650)
T ss_dssp SSEEEETTCTTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEE
T ss_pred CceEEeCCchhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEC
Confidence 478899999999999885 399999999999999887 655 566788999999999984
No 38
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=99.47 E-value=6.1e-12 Score=124.24 Aligned_cols=39 Identities=31% Similarity=0.543 Sum_probs=36.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCce
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~ 66 (520)
.|||+|||||++||+||+.|+++|++|+|||+++.+|..
T Consensus 4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~ 42 (397)
T 3oz2_A 4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSP 42 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCC
Confidence 489999999999999999999999999999998877653
No 39
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=99.41 E-value=1.2e-11 Score=126.95 Aligned_cols=38 Identities=29% Similarity=0.552 Sum_probs=35.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~G 64 (520)
.++||+|||||++||++|+.|+++|++|+|||+.+.++
T Consensus 4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~ 41 (535)
T 3ihg_A 4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLS 41 (535)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCC
T ss_pred ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence 46899999999999999999999999999999987654
No 40
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=99.41 E-value=8.6e-12 Score=123.69 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=41.6
Q ss_pred HHHHhccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhh
Q 010001 261 INTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 261 ~~~L~~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
.+.+.+ ++|+++++|++|+.+++++.|++.+|+++++|.||.|...+.
T Consensus 134 ~~~~~~-~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S 181 (407)
T 3rp8_A 134 LDYWGR-DSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHS 181 (407)
T ss_dssp HHHHCG-GGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCCTTC
T ss_pred HHhCCc-CEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCCcCh
Confidence 344444 899999999999999999999999999999999999987654
No 41
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=99.40 E-value=3e-12 Score=135.17 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=44.0
Q ss_pred HHHHHHHh-ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhh
Q 010001 258 LPVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 258 ~~l~~~L~-~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
..+.+.+. .|++|+++++|++|+.++++|.|++.+|.++.||.||+|+....
T Consensus 421 ~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s 473 (676)
T 3ps9_A 421 RNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQI 473 (676)
T ss_dssp HHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGG
T ss_pred HHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcch
Confidence 34444443 49999999999999999999999998888999999999998764
No 42
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=99.38 E-value=2.7e-12 Score=125.54 Aligned_cols=44 Identities=34% Similarity=0.553 Sum_probs=38.6
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
.+++||+|||||++||+||+.|+++|++|+|+|+++.+|+.+.+
T Consensus 2 ~~~~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~~~~~~~s~ 45 (369)
T 3dme_A 2 STDIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIGTGTSS 45 (369)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSCSTTS
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCccCc
Confidence 35689999999999999999999999999999999877765543
No 43
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=99.38 E-value=2e-12 Score=127.59 Aligned_cols=42 Identities=26% Similarity=0.476 Sum_probs=37.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
.+++||+|||||++||+||+.|+++|++|+|+|+++.+||.+
T Consensus 25 ~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~ 66 (417)
T 3v76_A 25 AEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKI 66 (417)
T ss_dssp ---CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcee
Confidence 456899999999999999999999999999999999988765
No 44
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=99.38 E-value=7.8e-12 Score=125.30 Aligned_cols=52 Identities=17% Similarity=0.242 Sum_probs=43.8
Q ss_pred HHHHHHHh-ccCCeecCc---eeEEEEEeCCeEE-EEEcCCcEEEcCEEEEecChhh
Q 010001 258 LPVINTLA-KGLDIRLGH---RVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 258 ~~l~~~L~-~gv~i~~~~---~V~~I~~~~~~v~-V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
..+.+.+. .|++|++++ +|++|..+++++. |++.+|+++.||.||+|+..+.
T Consensus 165 ~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s 221 (438)
T 3dje_A 165 VAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASA 221 (438)
T ss_dssp HHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGG
T ss_pred HHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCCh
Confidence 34444443 499999999 9999999998886 9999998899999999998775
No 45
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=99.37 E-value=3.4e-11 Score=118.30 Aligned_cols=49 Identities=20% Similarity=0.166 Sum_probs=40.8
Q ss_pred HHHHHh-ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhh
Q 010001 260 VINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 260 l~~~L~-~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
+.+.+. .|++++++++|.+|+.+++++.|++.+| ++.||.||+|+..+.
T Consensus 170 l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s 219 (382)
T 1ryi_A 170 YVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWS 219 (382)
T ss_dssp HHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGT
T ss_pred HHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhH
Confidence 334443 5899999999999999888888888888 899999999998753
No 46
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=99.36 E-value=1e-10 Score=115.57 Aligned_cols=38 Identities=32% Similarity=0.566 Sum_probs=35.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG 65 (520)
++||+|||||++||++|+.|+++|++|+|+|+.+.+|+
T Consensus 4 ~~dVvIvG~G~aGl~~A~~La~~G~~V~l~E~~~~~g~ 41 (397)
T 3cgv_A 4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGS 41 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence 48999999999999999999999999999999887765
No 47
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=99.35 E-value=3.8e-10 Score=111.43 Aligned_cols=50 Identities=30% Similarity=0.377 Sum_probs=41.3
Q ss_pred HHHHHHHh-ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChh
Q 010001 258 LPVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 308 (520)
Q Consensus 258 ~~l~~~L~-~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 308 (520)
..+.+.+. .|++|+++++|.+|+.+++++.|++.+| +++||.||+|+..+
T Consensus 157 ~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~~ 207 (397)
T 2oln_A 157 AALFTLAQAAGATLRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGPY 207 (397)
T ss_dssp HHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGGG
T ss_pred HHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCcC
Confidence 34444443 5899999999999999888888888777 89999999999765
No 48
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=99.34 E-value=2.2e-11 Score=128.71 Aligned_cols=52 Identities=12% Similarity=0.152 Sum_probs=42.9
Q ss_pred HHHHHHHh-ccCCeecCceeEEEEEeCCeEEEEEcCCc-EEEcCEEEEecChhh
Q 010001 258 LPVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGK-TFVADAVVVAVPLGV 309 (520)
Q Consensus 258 ~~l~~~L~-~gv~i~~~~~V~~I~~~~~~v~V~~~~g~-~~~ad~VI~a~p~~~ 309 (520)
..+.+.+. .|++|+++++|++|+.++++|.|.+.+|+ ++.||.||+|+..+.
T Consensus 416 ~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~s 469 (689)
T 3pvc_A 416 HALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHRL 469 (689)
T ss_dssp HHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGGT
T ss_pred HHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcch
Confidence 34444443 49999999999999999999999998887 899999999998874
No 49
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=99.33 E-value=1.4e-10 Score=114.20 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=40.6
Q ss_pred HHHHHh-ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhh
Q 010001 260 VINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 260 l~~~L~-~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
+.+.+. .|++++++++|++|+.+++++.|++.+| ++.||.||+|+..+.
T Consensus 156 l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~ 205 (389)
T 2gf3_A 156 YRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWN 205 (389)
T ss_dssp HHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGH
T ss_pred HHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCccH
Confidence 334443 5899999999999999888888888777 799999999998754
No 50
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=99.33 E-value=3.6e-10 Score=114.57 Aligned_cols=40 Identities=38% Similarity=0.438 Sum_probs=36.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~G 64 (520)
.++++||+|||||++||++|..|+++|++|+|||+.+.++
T Consensus 8 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~ 47 (500)
T 2qa1_A 8 HRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERT 47 (500)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-C
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence 5678999999999999999999999999999999987654
No 51
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=99.32 E-value=8.3e-11 Score=121.09 Aligned_cols=38 Identities=29% Similarity=0.351 Sum_probs=34.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG 65 (520)
.+||+|||||++||++|+.|+++|++|+|+|+.+.+++
T Consensus 23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~ 60 (591)
T 3i3l_A 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRY 60 (591)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCC
T ss_pred CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCC
Confidence 58999999999999999999999999999999865443
No 52
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=99.32 E-value=6.4e-11 Score=121.72 Aligned_cols=44 Identities=30% Similarity=0.253 Sum_probs=38.3
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEE--cCC-cEEEcCEEEEecChhh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTV--EGG-KTFVADAVVVAVPLGV 309 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~--~~g-~~~~ad~VI~a~p~~~ 309 (520)
.|++|+++++|++|+.+++++.|++ .+| ++++||.||.|...+.
T Consensus 161 ~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S 207 (570)
T 3fmw_A 161 AGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGRS 207 (570)
T ss_dssp HTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSSC
T ss_pred CCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence 3889999999999999999888776 678 6899999999987653
No 53
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=99.30 E-value=3.3e-10 Score=114.74 Aligned_cols=44 Identities=27% Similarity=0.250 Sum_probs=38.7
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCc---EEEcCEEEEecChhh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGK---TFVADAVVVAVPLGV 309 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~---~~~ad~VI~a~p~~~ 309 (520)
.|++|+++++|.+|+.++++++|++.++. +++||+||.|...+.
T Consensus 120 ~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S 166 (499)
T 2qa2_A 120 RGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRS 166 (499)
T ss_dssp TTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTC
T ss_pred CCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCccc
Confidence 48999999999999999999988888775 799999999987764
No 54
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=99.30 E-value=1.2e-10 Score=116.00 Aligned_cols=44 Identities=20% Similarity=0.212 Sum_probs=37.6
Q ss_pred ccCCeecCceeEEEEEeCCeE--EEEEcCCc--EEEcCEEEEecChhh
Q 010001 266 KGLDIRLGHRVTKITRHYIGV--KVTVEGGK--TFVADAVVVAVPLGV 309 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v--~V~~~~g~--~~~ad~VI~a~p~~~ 309 (520)
.|++++++++|++|+.+++++ .|.+.+|+ +++||.||.|+....
T Consensus 119 ~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s 166 (421)
T 3nix_A 119 QGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGR 166 (421)
T ss_dssp HTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGC
T ss_pred CCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCch
Confidence 499999999999999988774 56778887 699999999997653
No 55
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=99.26 E-value=2.5e-10 Score=114.68 Aligned_cols=38 Identities=32% Similarity=0.510 Sum_probs=34.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~ 63 (520)
.+++||+|||||++||++|+.|+++|++|+|+|+.+.+
T Consensus 4 ~~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~ 41 (453)
T 3atr_A 4 ELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWN 41 (453)
T ss_dssp EEECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGG
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 34689999999999999999999999999999998764
No 56
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=99.25 E-value=1e-10 Score=119.33 Aligned_cols=37 Identities=30% Similarity=0.345 Sum_probs=34.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~ 63 (520)
+++||+|||||++||++|+.|+++|++|+|+|+.+.+
T Consensus 6 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~ 42 (512)
T 3e1t_A 6 EVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFP 42 (512)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSS
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCC
Confidence 4589999999999999999999999999999998643
No 57
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=99.25 E-value=5.9e-11 Score=116.58 Aligned_cols=50 Identities=16% Similarity=0.032 Sum_probs=41.3
Q ss_pred HHHHHHh-ccCCeecCceeEEEEEeCCeEE-EEEcCCcEEEcCEEEEecChhh
Q 010001 259 PVINTLA-KGLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 259 ~l~~~L~-~gv~i~~~~~V~~I~~~~~~v~-V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
.+.+.+. .|++|+++++|++|+.+++++. |++.+| +++||.||+|+..+.
T Consensus 154 ~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s 205 (382)
T 1y56_B 154 AFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWA 205 (382)
T ss_dssp HHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred HHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhH
Confidence 3444443 5899999999999999888876 888888 899999999998764
No 58
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=99.25 E-value=3.5e-10 Score=114.92 Aligned_cols=38 Identities=29% Similarity=0.507 Sum_probs=34.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG 65 (520)
.+||+|||||++|+++|+.|+++|++|+|+|+.+..+|
T Consensus 3 ~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~~~~g 40 (501)
T 2qcu_A 3 TKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACA 40 (501)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCS
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCCCCCC
Confidence 58999999999999999999999999999999865444
No 59
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=99.24 E-value=5.2e-11 Score=122.19 Aligned_cols=53 Identities=28% Similarity=0.369 Sum_probs=44.7
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCCcccc
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVD 78 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d 78 (520)
+.++||+|||||++||++|+.|+++|++|+|||+++.+||.+......|...|
T Consensus 14 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d 66 (542)
T 1w4x_A 14 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCD 66 (542)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCS
T ss_pred CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeec
Confidence 34689999999999999999999999999999999999998765444444433
No 60
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=99.24 E-value=4.6e-11 Score=122.19 Aligned_cols=57 Identities=28% Similarity=0.363 Sum_probs=47.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCCcccccccc
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGAS 82 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~ 82 (520)
.+++||+|||||++||++|+.|++.|++|+|+|+++.+||.+......|...|...+
T Consensus 19 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~ 75 (549)
T 4ap3_A 19 TTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESI 75 (549)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTT
T ss_pred CCCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCch
Confidence 356899999999999999999999999999999999999988766666665555433
No 61
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=99.24 E-value=4.2e-11 Score=117.18 Aligned_cols=51 Identities=22% Similarity=0.204 Sum_probs=42.3
Q ss_pred HHHHHHHh-ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhh
Q 010001 258 LPVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 258 ~~l~~~L~-~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
..+.+.+. .|++++.+++|++|+.+++++.|++.+| ++.||.||+|+..+.
T Consensus 153 ~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s 204 (372)
T 2uzz_A 153 KTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADG-EYQAKKAIVCAGTWV 204 (372)
T ss_dssp HHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-EEEEEEEEECCGGGG
T ss_pred HHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCC-eEEcCEEEEcCCccH
Confidence 44444443 5899999999999999888888988888 699999999998764
No 62
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=99.23 E-value=5e-11 Score=122.43 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=38.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
..+||+|||||++|+++|+.|+++|++|+|+|+++..||...
T Consensus 17 ~~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d~~~GtS~ 58 (561)
T 3da1_A 17 KQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDFASGTSS 58 (561)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSSTTCSGGG
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCccc
Confidence 469999999999999999999999999999999987776553
No 63
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=99.22 E-value=1.8e-10 Score=113.63 Aligned_cols=44 Identities=11% Similarity=-0.003 Sum_probs=40.4
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
.|++|+++++|.+|+.+++++.|++.+|+++++|.||.|...+.
T Consensus 110 ~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S 153 (397)
T 2vou_A 110 GPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS 153 (397)
T ss_dssp CSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred CCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcch
Confidence 58999999999999999999999999999999999999987764
No 64
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=99.22 E-value=3.9e-11 Score=118.00 Aligned_cols=40 Identities=28% Similarity=0.503 Sum_probs=37.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
++||+|||||++||+||+.|+++|.+|+|+|+++.+|+..
T Consensus 4 ~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~ 43 (401)
T 2gqf_A 4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKI 43 (401)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred CCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhc
Confidence 5899999999999999999999999999999999887654
No 65
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=99.21 E-value=4.1e-10 Score=111.69 Aligned_cols=43 Identities=16% Similarity=0.113 Sum_probs=36.6
Q ss_pred cCCeecCceeEEEEEeCC-eEEEEEcCCcEEEcCEEEEecChhh
Q 010001 267 GLDIRLGHRVTKITRHYI-GVKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 267 gv~i~~~~~V~~I~~~~~-~v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
+.+|+++++|.+++..++ +++|+++||++++||.||-|-..+-
T Consensus 123 ~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S 166 (412)
T 4hb9_A 123 ANTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLVGADGSNS 166 (412)
T ss_dssp TTTEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred cceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEEECCCCCc
Confidence 347999999999987655 5899999999999999999977654
No 66
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=99.21 E-value=5.3e-11 Score=119.20 Aligned_cols=42 Identities=33% Similarity=0.533 Sum_probs=38.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
.+++||+|||||++||+||+.|+++|.+|+|+|+.+.+|+.+
T Consensus 24 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~ 65 (447)
T 2i0z_A 24 AMHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKL 65 (447)
T ss_dssp -CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred cCCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCcee
Confidence 456899999999999999999999999999999999887754
No 67
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=99.20 E-value=1.6e-10 Score=114.09 Aligned_cols=44 Identities=14% Similarity=-0.006 Sum_probs=39.4
Q ss_pred cCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChhhh
Q 010001 267 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 310 (520)
Q Consensus 267 gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l 310 (520)
+++|+++++|.+|+.+++++.|++.+|++++||.||.|...+..
T Consensus 140 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 183 (398)
T 2xdo_A 140 NDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSK 183 (398)
T ss_dssp TTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCTTCS
T ss_pred CCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCcchh
Confidence 46899999999999998889999999988999999999987643
No 68
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=99.18 E-value=1e-10 Score=119.38 Aligned_cols=53 Identities=28% Similarity=0.392 Sum_probs=45.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHH-hCCCcEEEEeccCCCCceeeecCCCCccccc
Q 010001 27 RSPSVIVIGAGMAGVAAARALH-DASFKVVLLESRDRVGGRVHTDYSFGFPVDL 79 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~-~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~ 79 (520)
+++||+|||||++||++|+.|+ +.|++|+|+|+++.+||.+......|...|.
T Consensus 7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~ 60 (540)
T 3gwf_A 7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDT 60 (540)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEE
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecC
Confidence 4589999999999999999999 8899999999999999987665555554444
No 69
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=99.18 E-value=3.6e-11 Score=119.12 Aligned_cols=51 Identities=22% Similarity=0.126 Sum_probs=40.8
Q ss_pred HHHHHHHh-ccCCeecCceeEEEEEeCCe-EEEEEcCCcEEEcCEEEEecChhh
Q 010001 258 LPVINTLA-KGLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 258 ~~l~~~L~-~gv~i~~~~~V~~I~~~~~~-v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
..+.+.+. .|++++++++|++|..++++ +.|++.+| ++.+|.||+|+....
T Consensus 178 ~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s 230 (405)
T 2gag_B 178 WAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHS 230 (405)
T ss_dssp HHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred HHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhH
Confidence 33444443 48999999999999998776 57888888 799999999998753
No 70
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=99.16 E-value=1.7e-09 Score=111.67 Aligned_cols=42 Identities=33% Similarity=0.623 Sum_probs=38.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhC------CCcEEEEeccCCCCcee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDA------SFKVVLLESRDRVGGRV 67 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~------G~~V~vlE~~~~~GG~~ 67 (520)
.+++||+|||||++||+||..|+++ |++|+|||+.+.+|+..
T Consensus 33 ~~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~ 80 (584)
T 2gmh_A 33 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHT 80 (584)
T ss_dssp EEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTC
T ss_pred ccCCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCcc
Confidence 3568999999999999999999999 99999999998888753
No 71
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=99.16 E-value=4.3e-10 Score=114.51 Aligned_cols=42 Identities=36% Similarity=0.472 Sum_probs=39.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
.++||+|||||++||+||+.|+++|++|+|+||.+.+||.+.
T Consensus 40 ~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~GG~s~ 81 (510)
T 4at0_A 40 YEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGATA 81 (510)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGG
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcch
Confidence 468999999999999999999999999999999999998753
No 72
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=99.14 E-value=8.3e-10 Score=114.10 Aligned_cols=43 Identities=35% Similarity=0.576 Sum_probs=39.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
...+||+|||||++||+||+.|+++|++|+|||+.+.+||.+.
T Consensus 124 ~~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~ 166 (571)
T 1y0p_A 124 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAK 166 (571)
T ss_dssp SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGG
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchh
Confidence 3468999999999999999999999999999999999888654
No 73
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=99.14 E-value=6.6e-10 Score=114.63 Aligned_cols=43 Identities=33% Similarity=0.502 Sum_probs=39.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
..++||+|||||++||+||+.|+++|.+|+|||+.+.+||...
T Consensus 119 ~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~ 161 (566)
T 1qo8_A 119 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSM 161 (566)
T ss_dssp SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGG
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCccc
Confidence 3568999999999999999999999999999999999888653
No 74
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=99.13 E-value=1.3e-10 Score=117.70 Aligned_cols=42 Identities=29% Similarity=0.405 Sum_probs=38.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
..++||+|||||++||+||+.|+++|++|+|||+.+.++++.
T Consensus 105 ~~~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~ 146 (549)
T 3nlc_A 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERT 146 (549)
T ss_dssp TCCCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHH
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccc
Confidence 445899999999999999999999999999999998887765
No 75
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=99.13 E-value=2.3e-10 Score=110.17 Aligned_cols=42 Identities=19% Similarity=0.367 Sum_probs=38.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
+++||+|||||++||+||+.|+++|++|+|+|+++.+||.+.
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 45 (335)
T 2zbw_A 4 DHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLT 45 (335)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHH
T ss_pred CcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeee
Confidence 458999999999999999999999999999999999988664
No 76
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=99.11 E-value=8.4e-10 Score=110.60 Aligned_cols=44 Identities=32% Similarity=0.474 Sum_probs=40.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEeccCCCCceeee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASF--KVVLLESRDRVGGRVHT 69 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~--~V~vlE~~~~~GG~~~s 69 (520)
.+.+||+|||||++||+||..|++.|+ +|+|||+++.+||.+..
T Consensus 4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~ 49 (447)
T 2gv8_A 4 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNY 49 (447)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSC
T ss_pred CCCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecC
Confidence 356899999999999999999999999 99999999999987643
No 77
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=99.10 E-value=3.7e-10 Score=109.90 Aligned_cols=43 Identities=23% Similarity=0.373 Sum_probs=39.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
.+++||+|||||++||+||+.|+++|++|+|||+++.+||.+.
T Consensus 12 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 54 (360)
T 3ab1_A 12 HDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLA 54 (360)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccc
Confidence 3468999999999999999999999999999999999988764
No 78
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=99.09 E-value=4.5e-10 Score=109.03 Aligned_cols=41 Identities=32% Similarity=0.545 Sum_probs=38.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
++||+|||||++||++|+.|+++|++|+|+|+++.+||.+.
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~ 43 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQ 43 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGG
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence 47999999999999999999999999999999999998765
No 79
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=99.09 E-value=1.5e-10 Score=118.27 Aligned_cols=53 Identities=30% Similarity=0.424 Sum_probs=45.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeeecCCCCccccc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDL 79 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~ 79 (520)
+++||+|||||++||++|+.|++.|++|+|+|+++.+||.+......|...|.
T Consensus 8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~ 60 (545)
T 3uox_A 8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDT 60 (545)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSS
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecC
Confidence 46899999999999999999999999999999999999987655555544443
No 80
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=99.07 E-value=3.5e-10 Score=111.71 Aligned_cols=50 Identities=16% Similarity=0.288 Sum_probs=42.4
Q ss_pred HHHHHhc--cCCeecCceeEEEEEeCCeE--EEEEcCCcEEEcCEEEEecChhh
Q 010001 260 VINTLAK--GLDIRLGHRVTKITRHYIGV--KVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 260 l~~~L~~--gv~i~~~~~V~~I~~~~~~v--~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
+.+.+.+ |++|+++++|++|+.+++++ .|++.+|+++++|.||.|...+.
T Consensus 113 L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~~s 166 (399)
T 2x3n_A 113 VLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIAS 166 (399)
T ss_dssp HHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCTTC
T ss_pred HHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCCCh
Confidence 3444543 78999999999999998888 89999998999999999997654
No 81
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=99.06 E-value=6.8e-10 Score=103.93 Aligned_cols=41 Identities=32% Similarity=0.551 Sum_probs=37.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhC-CCcEEEEeccCCCCcee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRDRVGGRV 67 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~-G~~V~vlE~~~~~GG~~ 67 (520)
.++||+|||||++||+||+.|+++ |.+|+|+|+++.+||.+
T Consensus 38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~ 79 (284)
T 1rp0_A 38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGA 79 (284)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTT
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCce
Confidence 357999999999999999999997 99999999999988754
No 82
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=99.06 E-value=8.3e-10 Score=105.55 Aligned_cols=42 Identities=21% Similarity=0.225 Sum_probs=35.6
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 308 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 308 (520)
.|+++++ ++|.+|..+++.+.|.+.+|+++.+|+||+|+...
T Consensus 83 ~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~ 124 (323)
T 3f8d_A 83 YEVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVK 124 (323)
T ss_dssp TTCCEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCE
T ss_pred cCCEEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCC
Confidence 4788999 99999999988899999998899999999999654
No 83
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=99.05 E-value=2.3e-09 Score=115.70 Aligned_cols=51 Identities=25% Similarity=0.176 Sum_probs=41.4
Q ss_pred HHHHHHHh-ccCCeecCceeEEEEEeCCeE-EEEEcCCcEEEcCEEEEecChhh
Q 010001 258 LPVINTLA-KGLDIRLGHRVTKITRHYIGV-KVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 258 ~~l~~~L~-~gv~i~~~~~V~~I~~~~~~v-~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
..+.+.+. .|++|+++++|++|+.+++++ .|.+.+| +++||.||+|+..+.
T Consensus 155 ~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s 207 (830)
T 1pj5_A 155 QLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWG 207 (830)
T ss_dssp HHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred HHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccch
Confidence 34444443 589999999999999988885 6888888 899999999998764
No 84
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=99.05 E-value=6e-10 Score=107.01 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=38.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
++||+|||||++||+||+.|+++|++|+|+|+++.+||.+.
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~ 47 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLS 47 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeh
Confidence 57999999999999999999999999999999999998763
No 85
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=99.02 E-value=1.8e-09 Score=109.24 Aligned_cols=48 Identities=23% Similarity=0.298 Sum_probs=41.2
Q ss_pred HHHHh-ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChh
Q 010001 261 INTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 308 (520)
Q Consensus 261 ~~~L~-~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 308 (520)
.+.|. .|++++++++|++|+.+++++.|.+.+|+++.+|.||+|++..
T Consensus 239 ~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~ 287 (484)
T 3o0h_A 239 NDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRV 287 (484)
T ss_dssp HHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEE
T ss_pred HHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCC
Confidence 34443 5999999999999999888888999999899999999999753
No 86
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=99.01 E-value=1.3e-08 Score=106.43 Aligned_cols=38 Identities=21% Similarity=0.465 Sum_probs=34.7
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHh-CCCcEEEEeccCCC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHD-ASFKVVLLESRDRV 63 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~-~G~~V~vlE~~~~~ 63 (520)
+.++||+|||||++||++|..|++ +|++|+|||+.+.+
T Consensus 30 ~~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~ 68 (639)
T 2dkh_A 30 PSQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGP 68 (639)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSC
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 346899999999999999999999 99999999998754
No 87
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=99.01 E-value=9.8e-10 Score=105.81 Aligned_cols=44 Identities=32% Similarity=0.379 Sum_probs=37.2
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC----CCCceee
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD----RVGGRVH 68 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~----~~GG~~~ 68 (520)
+.+++||+|||||++||+||+.|+++|++|+|+|+.+ .+||.+.
T Consensus 19 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~ 66 (338)
T 3itj_A 19 SHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLT 66 (338)
T ss_dssp --CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGG
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccc
Confidence 3567999999999999999999999999999999944 6666543
No 88
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=99.00 E-value=1.8e-09 Score=101.95 Aligned_cols=42 Identities=24% Similarity=0.519 Sum_probs=38.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCCCCceee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~--G~~V~vlE~~~~~GG~~~ 68 (520)
..+||+|||||++||+||+.|+++ |++|+|+|+...+||.+.
T Consensus 78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~ 121 (344)
T 3jsk_A 78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAW 121 (344)
T ss_dssp HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTT
T ss_pred CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccc
Confidence 358999999999999999999997 999999999999887553
No 89
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=98.99 E-value=1.4e-09 Score=107.67 Aligned_cols=38 Identities=37% Similarity=0.629 Sum_probs=34.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCc-EEEEeccCCCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFK-VVLLESRDRVG 64 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~-V~vlE~~~~~G 64 (520)
.++||+|||||++||++|..|+++|++ |+|+|+.+.++
T Consensus 3 ~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~ 41 (410)
T 3c96_A 3 EPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIR 41 (410)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcc
Confidence 458999999999999999999999999 99999987764
No 90
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=98.99 E-value=9.9e-10 Score=110.24 Aligned_cols=39 Identities=31% Similarity=0.384 Sum_probs=34.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCC-CcEEEEeccCCCCc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRDRVGG 65 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G-~~V~vlE~~~~~GG 65 (520)
.++||+|||||++||++|+.|+++| ++|+|+|++..+|+
T Consensus 22 ~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~~~~~ 61 (448)
T 3axb_A 22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPGS 61 (448)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSSSTTC
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCCCCCC
Confidence 3589999999999999999999999 99999999555554
No 91
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=98.98 E-value=3.3e-09 Score=103.87 Aligned_cols=38 Identities=32% Similarity=0.447 Sum_probs=35.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG 65 (520)
.+||+|||||++||++|..|+++|++|+|+|+.+.+++
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~ 48 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRA 48 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCC
Confidence 58999999999999999999999999999999887654
No 92
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=98.98 E-value=3.2e-09 Score=100.53 Aligned_cols=38 Identities=32% Similarity=0.398 Sum_probs=34.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCce
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~ 66 (520)
.|||+|||||++||+||.+|+++|++|+|+|+. .+||.
T Consensus 6 ~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~-~~gg~ 43 (304)
T 4fk1_A 6 YIDCAVIGAGPAGLNASLVLGRARKQIALFDNN-TNRNR 43 (304)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECS-CCGGG
T ss_pred CcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCCe
Confidence 589999999999999999999999999999985 45664
No 93
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=98.97 E-value=4.3e-09 Score=100.04 Aligned_cols=40 Identities=28% Similarity=0.424 Sum_probs=35.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCCCCceee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDRVGGRVH 68 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~~~~GG~~~ 68 (520)
++||+|||||++||+||..|+++|+ +|+|+|++ .+||.+.
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~~ 41 (311)
T 2q0l_A 1 MIDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQIT 41 (311)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGGG
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCcccc
Confidence 3799999999999999999999999 99999994 6777653
No 94
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=98.95 E-value=3.6e-09 Score=101.31 Aligned_cols=42 Identities=33% Similarity=0.508 Sum_probs=37.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
..++||+|||||++||+||..|+++|++|+|+|++ .+||.+.
T Consensus 6 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~ 47 (325)
T 2q7v_A 6 AHDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIA 47 (325)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGG
T ss_pred cccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCcccc
Confidence 34689999999999999999999999999999998 6888654
No 95
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=98.95 E-value=4.3e-09 Score=108.06 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=35.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG 65 (520)
.++||+|||||++||++|..|+++|++|+|+|+.+.+++
T Consensus 25 ~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~ 63 (549)
T 2r0c_A 25 IETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTIT 63 (549)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence 357999999999999999999999999999999876653
No 96
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=98.95 E-value=4.2e-09 Score=100.53 Aligned_cols=43 Identities=33% Similarity=0.537 Sum_probs=37.7
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
|.+++||+|||||++||+||+.|+++|++|+|+|+ ..+||.+.
T Consensus 13 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~ 55 (319)
T 3cty_A 13 KERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTA 55 (319)
T ss_dssp -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGG
T ss_pred ccCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCcccc
Confidence 55678999999999999999999999999999999 56787653
No 97
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=98.93 E-value=4.4e-09 Score=100.08 Aligned_cols=41 Identities=34% Similarity=0.404 Sum_probs=35.4
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCce
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~ 66 (520)
|+..|||+|||||+|||+||.+|+++|++|+|+|+.. .||.
T Consensus 1 M~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~-~gg~ 41 (314)
T 4a5l_A 1 MSNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFM-AGGV 41 (314)
T ss_dssp -CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS-GGGC
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCCc
Confidence 4567999999999999999999999999999999964 4443
No 98
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=98.93 E-value=2.9e-09 Score=99.97 Aligned_cols=41 Identities=34% Similarity=0.562 Sum_probs=37.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCCCCceee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~--G~~V~vlE~~~~~GG~~~ 68 (520)
.+||+|||||++||+||+.|+++ |++|+|+|+.+.+||.+.
T Consensus 65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~ 107 (326)
T 2gjc_A 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW 107 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccccccc
Confidence 45999999999999999999998 999999999999987543
No 99
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=98.93 E-value=1.9e-08 Score=103.67 Aligned_cols=42 Identities=43% Similarity=0.632 Sum_probs=38.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
..+||+|||||++||+||+.|+++|++|+|+|+.+.+||.+.
T Consensus 125 ~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~ 166 (572)
T 1d4d_A 125 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTK 166 (572)
T ss_dssp EECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGG
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchh
Confidence 468999999999999999999999999999999999988653
No 100
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=98.92 E-value=7.5e-09 Score=103.92 Aligned_cols=42 Identities=26% Similarity=0.489 Sum_probs=38.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHh---CCCc---EEEEeccCCCCceeee
Q 010001 28 SPSVIVIGAGMAGVAAARALHD---ASFK---VVLLESRDRVGGRVHT 69 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~---~G~~---V~vlE~~~~~GG~~~s 69 (520)
.+||+|||||++||+||..|++ .|++ |+|||+++.+||.+..
T Consensus 2 ~~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~ 49 (464)
T 2xve_A 2 ATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNY 49 (464)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSC
T ss_pred CCcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeec
Confidence 3799999999999999999999 9999 9999999999998754
No 101
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=98.92 E-value=2.6e-09 Score=105.22 Aligned_cols=36 Identities=33% Similarity=0.511 Sum_probs=33.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~ 63 (520)
++||+|||||++||++|+.|+++|++|+|+|+.+.+
T Consensus 2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 37 (394)
T 1k0i_A 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPD 37 (394)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 579999999999999999999999999999997653
No 102
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=98.91 E-value=5.3e-09 Score=102.00 Aligned_cols=40 Identities=38% Similarity=0.583 Sum_probs=36.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCCCCceee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDRVGGRVH 68 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~~~~GG~~~ 68 (520)
++||+|||||++||++|+.|++.|+ +|+|||+++ +||.+.
T Consensus 4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~ 44 (369)
T 3d1c_A 4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFK 44 (369)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHH
T ss_pred cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccc
Confidence 4899999999999999999999999 999999988 888554
No 103
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=98.91 E-value=9.6e-09 Score=92.97 Aligned_cols=41 Identities=22% Similarity=0.037 Sum_probs=35.4
Q ss_pred cCCeecCceeEEEEEeCCeE-EEEEcCCcEEEcCEEEEecChh
Q 010001 267 GLDIRLGHRVTKITRHYIGV-KVTVEGGKTFVADAVVVAVPLG 308 (520)
Q Consensus 267 gv~i~~~~~V~~I~~~~~~v-~V~~~~g~~~~ad~VI~a~p~~ 308 (520)
|++++ +++|++|..+++++ .|.+.+|+++.||.||.|+...
T Consensus 83 gv~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~ 124 (232)
T 2cul_A 83 PLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF 124 (232)
T ss_dssp TEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred CcEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCC
Confidence 77888 67999999988875 6888889889999999998774
No 104
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=98.90 E-value=5.4e-09 Score=98.55 Aligned_cols=36 Identities=33% Similarity=0.502 Sum_probs=33.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
|++||+|||||++||+||..|+++|++|+|+|+++.
T Consensus 1 m~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~ 36 (297)
T 3fbs_A 1 MKFDVIIIGGSYAGLSAALQLGRARKNILLVDAGER 36 (297)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCc
Confidence 358999999999999999999999999999999653
No 105
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=98.90 E-value=4e-09 Score=106.74 Aligned_cols=40 Identities=33% Similarity=0.444 Sum_probs=36.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCc
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG 65 (520)
...+||+|||||++||++|..|+++|++|+|+|+++.+|+
T Consensus 90 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~ 129 (497)
T 2bry_A 90 CTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSR 129 (497)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCC
T ss_pred cCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCC
Confidence 4578999999999999999999999999999999988764
No 106
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=98.90 E-value=1.2e-08 Score=88.31 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=36.6
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 308 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 308 (520)
.|++++++ +|++|+.+++++.|++++| ++.+|.||+|+...
T Consensus 69 ~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~ 109 (180)
T 2ywl_A 69 YGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKD 109 (180)
T ss_dssp TTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTC
T ss_pred cCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCC
Confidence 58999999 9999999888888998888 89999999998753
No 107
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=98.89 E-value=3.4e-09 Score=109.04 Aligned_cols=40 Identities=25% Similarity=0.439 Sum_probs=36.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCce
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~ 66 (520)
..+||+|||||++|+++|+.|+++|++|+|+|+.+..+|.
T Consensus 31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~~~Gt 70 (571)
T 2rgh_A 31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDFAEGT 70 (571)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCSG
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCc
Confidence 4689999999999999999999999999999998766553
No 108
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=98.89 E-value=9e-09 Score=102.03 Aligned_cols=43 Identities=28% Similarity=0.420 Sum_probs=38.4
Q ss_pred ccCCeecCceeEEEEEeCCeE-EEEEcCCcEEEcCEEEEecChh
Q 010001 266 KGLDIRLGHRVTKITRHYIGV-KVTVEGGKTFVADAVVVAVPLG 308 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v-~V~~~~g~~~~ad~VI~a~p~~ 308 (520)
.|++++++++|++|+.+++++ .|.+.+|+++.+|.||+|+...
T Consensus 207 ~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~ 250 (415)
T 3lxd_A 207 HGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIV 250 (415)
T ss_dssp TTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCE
T ss_pred CCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCc
Confidence 599999999999999887776 6889999999999999998753
No 109
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=98.89 E-value=7.7e-10 Score=105.94 Aligned_cols=69 Identities=26% Similarity=0.433 Sum_probs=51.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHh--CCCcEEEEeccCCCCceeeecCCCCcccccccceecCCCCCCchHHHHHHcCCCe
Q 010001 27 RSPSVIVIGAGMAGVAAARALHD--ASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~--~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (520)
.++||+|||||++||+||++|++ +|++|+|||+++.+||.+... ++.+ +...-...+..+++++|++.
T Consensus 64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~---~~~~-------~~~~l~~~~~~~~~e~Gv~~ 133 (326)
T 3fpz_A 64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLG---GQLF-------SAMVMRKPAHLFLQELEIPY 133 (326)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCC---STTC-------CCEEEETTTHHHHHHTTCCC
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeC---CccC-------CHHHHHHHHHHHHHHcCCEE
Confidence 35799999999999999999985 499999999999999987531 2211 11011235677888999874
Q ss_pred e
Q 010001 105 Y 105 (520)
Q Consensus 105 ~ 105 (520)
.
T Consensus 134 ~ 134 (326)
T 3fpz_A 134 E 134 (326)
T ss_dssp E
T ss_pred E
Confidence 3
No 110
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=98.86 E-value=4.6e-09 Score=106.91 Aligned_cols=39 Identities=31% Similarity=0.409 Sum_probs=35.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC-CCCc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD-RVGG 65 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~-~~GG 65 (520)
..+||+|||||++|++||+.|++.|.+|+|+|++. .+|+
T Consensus 26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~ 65 (637)
T 2zxi_A 26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQ 65 (637)
T ss_dssp GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCC
Confidence 46999999999999999999999999999999974 5553
No 111
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=98.86 E-value=3.3e-09 Score=104.79 Aligned_cols=38 Identities=29% Similarity=0.358 Sum_probs=34.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCCCCc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGG 65 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~--G~~V~vlE~~~~~GG 65 (520)
.+||+|||||++||++|+.|+++ |++|+|||+....+|
T Consensus 36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~ 75 (405)
T 3c4n_A 36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNE 75 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCT
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCc
Confidence 48999999999999999999999 999999999765544
No 112
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=98.85 E-value=1.7e-08 Score=101.60 Aligned_cols=43 Identities=33% Similarity=0.522 Sum_probs=39.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
.+++||+|||||++||+||..|++.|++|+|+|+++.+||.|.
T Consensus 2 ~~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~ 44 (466)
T 3l8k_A 2 SLKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCL 44 (466)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHH
T ss_pred CccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCccc
Confidence 3468999999999999999999999999999999999999875
No 113
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=98.85 E-value=9.4e-09 Score=98.08 Aligned_cols=40 Identities=28% Similarity=0.500 Sum_probs=36.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
+++||+|||||++||+||+.|+++|++|+|+|+ ..+||.+
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~ 43 (320)
T 1trb_A 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQL 43 (320)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECC-SSTTGGG
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEcc-CCCCceE
Confidence 468999999999999999999999999999997 4677754
No 114
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=98.85 E-value=1.2e-08 Score=98.17 Aligned_cols=42 Identities=33% Similarity=0.457 Sum_probs=36.9
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
+.+++||+|||||++||+||+.|+++|++|+|+|+. .+||.+
T Consensus 11 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~ 52 (335)
T 2a87_A 11 HHPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGAL 52 (335)
T ss_dssp CCCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGG
T ss_pred cCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCce
Confidence 345789999999999999999999999999999974 677754
No 115
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=98.83 E-value=6.3e-08 Score=100.71 Aligned_cols=41 Identities=24% Similarity=0.328 Sum_probs=36.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
..+||+|||||++||+||+.|+++|.+|+|+|+....+|.+
T Consensus 4 ~~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~~g~s 44 (660)
T 2bs2_A 4 QYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHS 44 (660)
T ss_dssp EECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSGG
T ss_pred ccccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence 35899999999999999999999999999999987765543
No 116
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=98.83 E-value=6.6e-09 Score=106.17 Aligned_cols=42 Identities=26% Similarity=0.216 Sum_probs=36.0
Q ss_pred cCCeecCceeEEEEEeCCeE-EEEEcCCcEEEcCEEEEecChhh
Q 010001 267 GLDIRLGHRVTKITRHYIGV-KVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 267 gv~i~~~~~V~~I~~~~~~v-~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
|+++ ++++|.+|..+++++ .|.+.+|.++.||.||+|+....
T Consensus 139 GV~I-~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s 181 (651)
T 3ces_A 139 NLMI-FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFL 181 (651)
T ss_dssp TEEE-EECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTT
T ss_pred CCEE-EEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCc
Confidence 7888 678999999888875 78888998899999999997653
No 117
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=98.82 E-value=1.7e-08 Score=95.92 Aligned_cols=41 Identities=29% Similarity=0.446 Sum_probs=37.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEE-EeccCCCCceee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVL-LESRDRVGGRVH 68 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~v-lE~~~~~GG~~~ 68 (520)
.++||+|||||++||+||+.|+++|++|+| +|+ +.+||.+.
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~ 44 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQIT 44 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGG
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceee
Confidence 568999999999999999999999999999 999 77888754
No 118
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=98.80 E-value=1.3e-08 Score=97.69 Aligned_cols=41 Identities=29% Similarity=0.252 Sum_probs=35.3
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 308 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 308 (520)
.|+++++++ |.+|..+++.+.|++ +|+++.+|.||+|+...
T Consensus 83 ~gv~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~ 123 (333)
T 1vdc_A 83 FGTTIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAV 123 (333)
T ss_dssp TTCEEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEE
T ss_pred CCCEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCC
Confidence 478999987 999998888888887 78889999999999754
No 119
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=98.80 E-value=1.2e-07 Score=97.63 Aligned_cols=41 Identities=29% Similarity=0.328 Sum_probs=36.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
..+||+|||||++||+||+.|+++|.+|+|+|+....||..
T Consensus 6 ~~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g~s 46 (588)
T 2wdq_A 6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHT 46 (588)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGG
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence 35899999999999999999999999999999988776543
No 120
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=98.79 E-value=9e-08 Score=98.85 Aligned_cols=41 Identities=27% Similarity=0.339 Sum_probs=36.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
..+||+|||||++||+||+.|+++|.+|+|+|+....||.+
T Consensus 17 ~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g~s 57 (621)
T 2h88_A 17 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHT 57 (621)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGG
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence 45899999999999999999999999999999987666543
No 121
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=98.79 E-value=2.1e-08 Score=104.07 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=35.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCCCC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVG 64 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~--G~~V~vlE~~~~~G 64 (520)
.+++||+|||||++||+||+.|+++ |++|+|||+++.+|
T Consensus 34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~ 74 (588)
T 3ics_A 34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYIS 74 (588)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred ccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence 3568999999999999999999998 89999999987654
No 122
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=98.78 E-value=2.3e-08 Score=94.95 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=36.2
Q ss_pred ccCCeecCceeEEEEEeC---CeEEEEEcCCcEEEcCEEEEecChh
Q 010001 266 KGLDIRLGHRVTKITRHY---IGVKVTVEGGKTFVADAVVVAVPLG 308 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~---~~v~V~~~~g~~~~ad~VI~a~p~~ 308 (520)
.|++++++++|.+|..+. +.+.|.+++|+++.+|+||+|+...
T Consensus 69 ~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~ 114 (310)
T 1fl2_A 69 YDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAK 114 (310)
T ss_dssp SCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEE
T ss_pred cCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCC
Confidence 478999999999998753 3688888889899999999999753
No 123
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=98.77 E-value=2.4e-08 Score=100.56 Aligned_cols=39 Identities=23% Similarity=0.339 Sum_probs=36.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCC-----CcEEEEeccCCCCc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDAS-----FKVVLLESRDRVGG 65 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G-----~~V~vlE~~~~~GG 65 (520)
..+||+|||||++||+||..|+++| .+|+|||+++.+|.
T Consensus 29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~ 72 (463)
T 3s5w_A 29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRW 72 (463)
T ss_dssp CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCS
T ss_pred CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCC
Confidence 4579999999999999999999999 99999999998873
No 124
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=98.77 E-value=7.7e-08 Score=94.91 Aligned_cols=43 Identities=33% Similarity=0.406 Sum_probs=38.3
Q ss_pred ccCCeecCceeEEEEEeCCeE-EEEEcCCcEEEcCEEEEecChh
Q 010001 266 KGLDIRLGHRVTKITRHYIGV-KVTVEGGKTFVADAVVVAVPLG 308 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v-~V~~~~g~~~~ad~VI~a~p~~ 308 (520)
.|++++++++|.+|+.+++++ .|.+.+|+++.+|.||+|+...
T Consensus 197 ~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~ 240 (404)
T 3fg2_P 197 AGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVI 240 (404)
T ss_dssp TTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEE
T ss_pred CCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCc
Confidence 599999999999999888775 6889999999999999998753
No 125
>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=98.76 E-value=2.8e-10 Score=90.69 Aligned_cols=108 Identities=18% Similarity=0.225 Sum_probs=65.1
Q ss_pred cEEEcCEEEEecChhhhhcCcccccCCCchHHHHHHhhcCCcceeEEEEEeCCCcccCCccceeecCCCCceeEeeeccC
Q 010001 294 KTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHK 373 (520)
Q Consensus 294 ~~~~ad~VI~a~p~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 373 (520)
++++||+||+|+|+..++ .+.|.|+||....+++++++++..+|+++.|+.+||++....|. +...
T Consensus 4 ~~~~Ad~VIvTvP~~vL~--~I~F~P~LP~~k~~Ai~~l~~g~~~Kv~l~f~~~FW~~~~~~gd------------~s~~ 69 (130)
T 2e1m_B 4 QTWTGDLAIVTIPFSSLR--FVKVTPPFSYKKRRAVIETHYDQATKVLLEFSRRWWEFTEADWK------------RELD 69 (130)
T ss_dssp EEEEESEEEECSCHHHHT--TSEEESCCCHHHHHHHHHCCEECEEEEEEEESSCGGGCCHHHHH------------HHHH
T ss_pred eEEEcCEEEEcCCHHHHh--cCcCCCCCCHHHHHHHHhCCCcceeEEEEEECCCCCCCCCcccc------------ccCC
Confidence 378999999999999987 56899999999999999999999999999999999997644331 0000
Q ss_pred CCCceEEEEEe-chhhhHHHhcCCHHHHHHHHHHHHHHHCCCCC
Q 010001 374 ATGHCVLVYMP-AGQLARDIEKMSDEAAANFAFTQLKKILPDAS 416 (520)
Q Consensus 374 ~~~~~~l~~~~-~~~~~~~~~~~~~ee~~~~~~~~L~~~~~~~~ 416 (520)
+.+..+++.++ .++.+..|..++. +-.+.+++.|.+++|+..
T Consensus 70 ~~~pg~l~~f~~wg~~A~~~~~l~~-~~r~~~~~~l~~~~p~~~ 112 (130)
T 2e1m_B 70 AIAPGLYDYYQQWGEDDAEAALALP-QSVRNLPTGLLGAHPSVD 112 (130)
T ss_dssp HHSTTHHHHHHHHCCCSCCCC-----------------------
T ss_pred CCCCeEEEEecccCHHHHHHhcCCH-HHHHHHHHHHHHhCCCCc
Confidence 11222555555 3666666767754 677889999999999654
No 126
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=98.75 E-value=8.5e-08 Score=96.32 Aligned_cols=36 Identities=42% Similarity=0.649 Sum_probs=33.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCce
Q 010001 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~ 66 (520)
||+|||||++||+||+.|+++|.+|+|+|+. ..||.
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g~ 36 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGGS 36 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCch
Confidence 8999999999999999999999999999998 55554
No 127
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.75 E-value=7.5e-08 Score=97.10 Aligned_cols=43 Identities=30% Similarity=0.497 Sum_probs=39.7
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
..++||+|||||++|++||..|++.|++|+|+|+++.+||.|.
T Consensus 4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~ 46 (470)
T 1dxl_A 4 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCL 46 (470)
T ss_dssp CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHH
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcccccc
Confidence 4579999999999999999999999999999999989998764
No 128
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=98.74 E-value=7.7e-08 Score=98.12 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=37.1
Q ss_pred ccCCeecCceeEEEEEeCCe--EEEEEcCCcEEEcCEEEEecChhh
Q 010001 266 KGLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~--v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
.|++++.+ +|.+|+.++++ +.|++.+|++++||.||.|...+.
T Consensus 186 ~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S 230 (511)
T 2weu_A 186 RGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRG 230 (511)
T ss_dssp TTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGC
T ss_pred CCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcch
Confidence 58999999 99999986554 678888898899999999998764
No 129
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=98.74 E-value=6.2e-09 Score=99.02 Aligned_cols=43 Identities=33% Similarity=0.461 Sum_probs=37.5
Q ss_pred CC-CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 25 QA-RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 25 ~~-~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
|+ ++|||+|||||++||+||.+|+++|++|+|+|+ +.+||.|.
T Consensus 2 Mte~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~-~~~gG~~~ 45 (312)
T 4gcm_A 2 MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIER-GIPGGQMA 45 (312)
T ss_dssp --CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTGGGG
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCCeee
Confidence 44 479999999999999999999999999999998 57888764
No 130
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=98.74 E-value=4.2e-08 Score=99.95 Aligned_cols=40 Identities=33% Similarity=0.503 Sum_probs=35.7
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
...+||+|||||++||+||..|+++|++|+|+|+ ++||.+
T Consensus 210 ~~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~ 249 (521)
T 1hyu_A 210 RDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQV 249 (521)
T ss_dssp SCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGG
T ss_pred cCcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCcc
Confidence 3578999999999999999999999999999986 567765
No 131
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=98.73 E-value=4.8e-08 Score=98.74 Aligned_cols=44 Identities=32% Similarity=0.463 Sum_probs=40.0
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
|..++||+|||||++|++||..|++.|++|+|+|+++.+||.|.
T Consensus 3 m~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~ 46 (482)
T 1ojt_A 3 ADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCL 46 (482)
T ss_dssp SEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHH
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCcee
Confidence 44568999999999999999999999999999999989998764
No 132
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=98.73 E-value=1.5e-08 Score=103.56 Aligned_cols=40 Identities=35% Similarity=0.441 Sum_probs=35.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC-CCCc
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD-RVGG 65 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~-~~GG 65 (520)
...+||+|||||++|++||+.|++.|.+|+|+|++. .+|+
T Consensus 19 ~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~ 59 (641)
T 3cp8_A 19 SHMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVAR 59 (641)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC
T ss_pred cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCC
Confidence 456999999999999999999999999999999975 4554
No 133
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Probab=98.72 E-value=9.7e-07 Score=92.40 Aligned_cols=36 Identities=36% Similarity=0.629 Sum_probs=33.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHh-----CCCcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHD-----ASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~-----~G~~V~vlE~~~~ 62 (520)
.++||+|||||++||++|..|++ .|++|+|||+.+.
T Consensus 7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~ 47 (665)
T 1pn0_A 7 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 47 (665)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCC
Confidence 35899999999999999999999 9999999999754
No 134
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=98.71 E-value=1.2e-07 Score=97.28 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=36.6
Q ss_pred ccCCeecCceeEEEEEeCCe--EEEEEcCCcEEEcCEEEEecChhh
Q 010001 266 KGLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~--v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
.|++++.+ +|.+|..++++ +.|++.+|++++||.||.|+..+.
T Consensus 178 ~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s 222 (538)
T 2aqj_A 178 RGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRG 222 (538)
T ss_dssp TTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGC
T ss_pred CCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCch
Confidence 58999999 89999986554 578888898899999999998764
No 135
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=98.70 E-value=5.3e-08 Score=99.37 Aligned_cols=40 Identities=33% Similarity=0.512 Sum_probs=34.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
..+||+|||||++||+||+.|++ |.+|+|+|+.+..||..
T Consensus 7 ~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~s 46 (540)
T 1chu_A 7 HSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGST 46 (540)
T ss_dssp EECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC---
T ss_pred CCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCCh
Confidence 46899999999999999999999 99999999998777654
No 136
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=98.69 E-value=2.8e-07 Score=95.25 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=35.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCC--CcEEEEeccCCCCce
Q 010001 28 SPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGR 66 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G--~~V~vlE~~~~~GG~ 66 (520)
.+||+|||||++||+||+.|+++| .+|+|+|+....+|.
T Consensus 5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~ 45 (602)
T 1kf6_A 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSH 45 (602)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSG
T ss_pred cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCCh
Confidence 589999999999999999999999 999999998766553
No 137
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=98.69 E-value=7.8e-08 Score=95.01 Aligned_cols=43 Identities=26% Similarity=0.400 Sum_probs=37.7
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 308 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 308 (520)
.|++++++++|.+|+.+++...|++.+|+++.+|.||+|++..
T Consensus 198 ~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~ 240 (410)
T 3ef6_A 198 LGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAE 240 (410)
T ss_dssp HTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEE
T ss_pred CCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCe
Confidence 5999999999999988765557889999999999999998753
No 138
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=98.67 E-value=8.4e-08 Score=98.51 Aligned_cols=42 Identities=26% Similarity=0.283 Sum_probs=36.5
Q ss_pred cCCeecCceeEEEEEeCCe--EEEEEcCCcEEEcCEEEEecChhh
Q 010001 267 GLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 267 gv~i~~~~~V~~I~~~~~~--v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
|++++++ +|++|+.++++ +.|++.+|+++.||.||.|+....
T Consensus 209 Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S 252 (550)
T 2e4g_A 209 GVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRG 252 (550)
T ss_dssp CCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGC
T ss_pred CcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCch
Confidence 8999999 99999986554 578888998899999999998764
No 139
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.65 E-value=1.4e-07 Score=94.64 Aligned_cols=41 Identities=29% Similarity=0.402 Sum_probs=37.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
.++||+|||||++|++||..|++.|++|+|+|++ .+||.|.
T Consensus 2 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~ 42 (455)
T 1ebd_A 2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCL 42 (455)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCc
Confidence 3589999999999999999999999999999997 7888764
No 140
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=98.64 E-value=6.8e-08 Score=96.78 Aligned_cols=36 Identities=31% Similarity=0.561 Sum_probs=33.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCCCC
Q 010001 29 PSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVG 64 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~--G~~V~vlE~~~~~G 64 (520)
+||+|||||++||+||+.|+++ |++|+|+|+++.+|
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g 40 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVG 40 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCS
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCc
Confidence 6999999999999999999998 89999999988665
No 141
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=98.61 E-value=8.6e-07 Score=92.45 Aligned_cols=36 Identities=28% Similarity=0.491 Sum_probs=33.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHH---h-CCCcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALH---D-ASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~---~-~G~~V~vlE~~~~ 62 (520)
..+||+|||||++||+||..|+ + +|.+|+|+|+...
T Consensus 21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~ 60 (643)
T 1jnr_A 21 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV 60 (643)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred ccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence 4589999999999999999999 6 8999999999875
No 142
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=98.58 E-value=1.1e-07 Score=95.96 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=31.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCCCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVG 64 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~--G~~V~vlE~~~~~G 64 (520)
++||+|||||++||+||+.|+++ |++|+|||+++.++
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~ 41 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRIS 41 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC----
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccc
Confidence 47999999999999999999998 99999999987753
No 143
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=98.58 E-value=3.4e-07 Score=89.34 Aligned_cols=38 Identities=26% Similarity=0.482 Sum_probs=33.7
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~ 63 (520)
.++.+|+|||||+||++||..|...|.+|+|||+++.+
T Consensus 7 ~~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~ 44 (385)
T 3klj_A 7 HKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYL 44 (385)
T ss_dssp -CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSC
T ss_pred cCCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence 46789999999999999999997779999999998763
No 144
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=98.57 E-value=7.3e-07 Score=92.68 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=34.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhC------CCcEEEEeccCCCCc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDA------SFKVVLLESRDRVGG 65 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~------G~~V~vlE~~~~~GG 65 (520)
.+||+|||||++||+||+.|+++ |.+|+|+|+....++
T Consensus 22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~~s 65 (662)
T 3gyx_A 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERS 65 (662)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTTTC
T ss_pred EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCCCC
Confidence 58999999999999999999998 999999999866443
No 145
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=98.56 E-value=5.5e-08 Score=94.56 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=36.2
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCc
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG 65 (520)
|.+++||+|||||++|+++|+.|+++|++|+|+|+....+|
T Consensus 3 m~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~~g 43 (363)
T 1c0p_A 3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV 43 (363)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCCCc
Confidence 45678999999999999999999999999999999764443
No 146
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=98.54 E-value=4.7e-07 Score=89.93 Aligned_cols=37 Identities=24% Similarity=0.504 Sum_probs=33.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEeccCC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASF--KVVLLESRDR 62 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~--~V~vlE~~~~ 62 (520)
.+++||+|||||++||+||..|+++|+ +|+|+|+++.
T Consensus 2 ~~~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~ 40 (431)
T 1q1r_A 2 NANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATV 40 (431)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCS
T ss_pred CCCCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCC
Confidence 356899999999999999999999998 7999999753
No 147
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=98.52 E-value=5.2e-08 Score=98.75 Aligned_cols=42 Identities=31% Similarity=0.452 Sum_probs=38.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
+++||+|||||++||+||..|+++|++|+|+|+++.+||.|.
T Consensus 24 ~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~ 65 (491)
T 3urh_A 24 MAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCL 65 (491)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence 468999999999999999999999999999999999999765
No 148
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=98.51 E-value=3.2e-07 Score=94.78 Aligned_cols=36 Identities=19% Similarity=0.408 Sum_probs=32.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCCCC
Q 010001 29 PSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVG 64 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~--G~~V~vlE~~~~~G 64 (520)
+||+|||||++||+||+.|+++ |++|+|+|+++.+|
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~ 39 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVS 39 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence 6999999999999999999998 88999999987643
No 149
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=98.49 E-value=4.3e-07 Score=89.75 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=32.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHh---CCCcEEEEeccCC
Q 010001 29 PSVIVIGAGMAGVAAARALHD---ASFKVVLLESRDR 62 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~---~G~~V~vlE~~~~ 62 (520)
+||+|||||++||++|..|++ .|++|+|+|+++.
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~ 38 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRF 38 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCC
Confidence 589999999999999999999 8999999999874
No 150
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=98.45 E-value=1.3e-07 Score=99.74 Aligned_cols=45 Identities=42% Similarity=0.665 Sum_probs=41.5
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
...++||+|||||++||+||+.|+++|++|+|+|+++.+||.+..
T Consensus 388 ~~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~ 432 (690)
T 3k30_A 388 KESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQ 432 (690)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHH
T ss_pred ccccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeee
Confidence 356789999999999999999999999999999999999998764
No 151
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=98.45 E-value=3.6e-07 Score=92.22 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=35.1
Q ss_pred cCCeecCceeEEEEEeCCeEEEEE-cCCc--EEEcCEEEEecCh
Q 010001 267 GLDIRLGHRVTKITRHYIGVKVTV-EGGK--TFVADAVVVAVPL 307 (520)
Q Consensus 267 gv~i~~~~~V~~I~~~~~~v~V~~-~~g~--~~~ad~VI~a~p~ 307 (520)
|++++++++|..|..+++.+.+.. .+|+ ++.+|+||+|+..
T Consensus 107 gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~ 150 (480)
T 3cgb_A 107 GIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGV 150 (480)
T ss_dssp CCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred CCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCC
Confidence 889999999999998888887776 4576 7899999999964
No 152
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=98.44 E-value=9.4e-08 Score=96.09 Aligned_cols=41 Identities=32% Similarity=0.391 Sum_probs=38.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
.++||+|||||++||+||+.|+++|++|+|+|+ +.+||.|.
T Consensus 4 ~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~ 44 (463)
T 4dna_A 4 FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCV 44 (463)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHH
T ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCccc
Confidence 368999999999999999999999999999999 78999764
No 153
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=98.44 E-value=1.7e-07 Score=93.48 Aligned_cols=43 Identities=42% Similarity=0.561 Sum_probs=39.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
...+||+|||||++||+||+.|+++|++|+|||+.+.+||.+.
T Consensus 120 ~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~ 162 (456)
T 2vdc_G 120 ELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLV 162 (456)
T ss_dssp SCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeee
Confidence 3568999999999999999999999999999999999999764
No 154
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=98.44 E-value=1.5e-07 Score=96.01 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=40.8
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
+..++||+|||||++|++||+.|++.|++|+|+|+++.+||.|.
T Consensus 40 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~ 83 (523)
T 1mo9_A 40 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCP 83 (523)
T ss_dssp CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHH
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCccc
Confidence 45679999999999999999999999999999999988999875
No 155
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=98.43 E-value=4.3e-07 Score=91.90 Aligned_cols=37 Identities=19% Similarity=0.440 Sum_probs=33.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCC---CcEEEEeccCCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDAS---FKVVLLESRDRV 63 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G---~~V~vlE~~~~~ 63 (520)
+++||+|||||++|++||..|++.| ++|+|+|+++.+
T Consensus 34 m~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~ 73 (490)
T 2bc0_A 34 WGSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNI 73 (490)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCC
T ss_pred cCCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCC
Confidence 3589999999999999999999988 999999997754
No 156
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=98.42 E-value=7.5e-07 Score=89.05 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=33.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCCCC
Q 010001 29 PSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVG 64 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~--G~~V~vlE~~~~~G 64 (520)
+||+|||||++|++||..|++. |++|+|+|+++.+|
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~ 38 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS 38 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccC
Confidence 5899999999999999999998 99999999987644
No 157
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=98.41 E-value=1.7e-07 Score=95.38 Aligned_cols=44 Identities=30% Similarity=0.457 Sum_probs=38.4
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC--------CCCceee
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD--------RVGGRVH 68 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~--------~~GG~~~ 68 (520)
+..++||+|||||++||+||..|++.|++|+|+|+++ .+||.|.
T Consensus 29 ~~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~ 80 (519)
T 3qfa_A 29 KSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCV 80 (519)
T ss_dssp SSCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHH
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccC
Confidence 3456899999999999999999999999999999965 6777653
No 158
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=98.41 E-value=1.4e-07 Score=94.95 Aligned_cols=41 Identities=29% Similarity=0.439 Sum_probs=38.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
++||+|||||++|++||..|++.|++|+|+|+++.+||.|.
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 42 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCL 42 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCC
Confidence 58999999999999999999999999999999989999875
No 159
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=98.39 E-value=5.2e-07 Score=91.30 Aligned_cols=42 Identities=26% Similarity=0.216 Sum_probs=32.4
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCce
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~ 66 (520)
...-+||||||||++||++|..|.++|...+++|+.+..|+.
T Consensus 36 ~~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~ 77 (501)
T 4b63_A 36 QDELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQP 77 (501)
T ss_dssp TTSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCC
T ss_pred CCCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCc
Confidence 345589999999999999999999988887888877766654
No 160
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=98.38 E-value=2.2e-07 Score=93.83 Aligned_cols=41 Identities=34% Similarity=0.423 Sum_probs=37.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
+++||+|||||++||+||..|+++|++|+|+|+++.+||..
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~ 42 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT 42 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSB
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCC
Confidence 46999999999999999999999999999999998666654
No 161
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=98.37 E-value=1.6e-07 Score=90.87 Aligned_cols=37 Identities=27% Similarity=0.419 Sum_probs=33.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCC------CcEEEEeccCCCCc
Q 010001 29 PSVIVIGAGMAGVAAARALHDAS------FKVVLLESRDRVGG 65 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G------~~V~vlE~~~~~GG 65 (520)
+||+|||||++||++|+.|+++| ++|+|+|+....+|
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~~~ 43 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLT 43 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGGGS
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCCCCC
Confidence 59999999999999999999998 89999999875444
No 162
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=98.37 E-value=1.9e-07 Score=93.67 Aligned_cols=42 Identities=31% Similarity=0.483 Sum_probs=38.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
.+++||+|||||++|++||..|++.|++|+|+|++ .+||.|.
T Consensus 2 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~ 43 (463)
T 2r9z_A 2 TQHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGGTCV 43 (463)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred CccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCcCc
Confidence 35689999999999999999999999999999997 7899875
No 163
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=98.37 E-value=2.4e-07 Score=93.25 Aligned_cols=42 Identities=33% Similarity=0.423 Sum_probs=38.6
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
..++||+|||||++|++||+.|++.|++|+|+|++ .+||.|.
T Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~ 43 (467)
T 1zk7_A 2 EPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCV 43 (467)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHH
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCcccc
Confidence 45789999999999999999999999999999997 7899765
No 164
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=98.35 E-value=1.4e-07 Score=95.38 Aligned_cols=42 Identities=33% Similarity=0.553 Sum_probs=39.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
.++||+|||||++|++||..|+++|++|+|+|+++.+||.|.
T Consensus 4 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~ 45 (478)
T 1v59_A 4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCL 45 (478)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccc
Confidence 468999999999999999999999999999999999999764
No 165
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=98.35 E-value=1.8e-07 Score=93.54 Aligned_cols=42 Identities=26% Similarity=0.427 Sum_probs=38.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
.+++||+|||||++|++||+.|++.|++|+|+|++ .+||.|.
T Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~ 43 (450)
T 1ges_A 2 TKHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCV 43 (450)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHH
T ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC-CCCCccc
Confidence 34689999999999999999999999999999997 7899874
No 166
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=98.34 E-value=2e-07 Score=94.01 Aligned_cols=42 Identities=33% Similarity=0.489 Sum_probs=39.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
+++||+|||||++|++||..|++.|++|+|+|+++.+||.|.
T Consensus 5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~ 46 (474)
T 1zmd_A 5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCL 46 (474)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCccc
Confidence 468999999999999999999999999999999999999864
No 167
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=98.32 E-value=2e-07 Score=94.28 Aligned_cols=44 Identities=23% Similarity=0.378 Sum_probs=39.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHh-CCCcEEEEe--------ccCCCCceee
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHD-ASFKVVLLE--------SRDRVGGRVH 68 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~-~G~~V~vlE--------~~~~~GG~~~ 68 (520)
|.+++||+|||||++|++||+.|++ .|++|+|+| +.+.+||.|.
T Consensus 4 M~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~ 56 (495)
T 2wpf_A 4 MSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCV 56 (495)
T ss_dssp CCEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHH
T ss_pred cccccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeee
Confidence 4556899999999999999999999 999999999 4678899774
No 168
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=98.32 E-value=2.9e-07 Score=92.27 Aligned_cols=41 Identities=32% Similarity=0.429 Sum_probs=38.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
++||+|||||++|++||..|++.|++|+|+|+++.+||.|.
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 41 (455)
T 2yqu_A 1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCL 41 (455)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence 37999999999999999999999999999999989999864
No 169
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=98.32 E-value=6.8e-06 Score=80.27 Aligned_cols=43 Identities=26% Similarity=0.398 Sum_probs=38.7
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 308 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 308 (520)
.|++++++++|.+|+.+++++.|.+.+|+++.+|.||+|+...
T Consensus 200 ~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~ 242 (384)
T 2v3a_A 200 LGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLR 242 (384)
T ss_dssp TTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEE
T ss_pred cCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCC
Confidence 5899999999999998888888888999899999999998653
No 170
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=98.31 E-value=3e-07 Score=92.98 Aligned_cols=43 Identities=28% Similarity=0.417 Sum_probs=38.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEec--------cCCCCceee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLES--------RDRVGGRVH 68 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~--------~~~~GG~~~ 68 (520)
..++||+|||||++||+||..|++.|++|+|+|+ ...+||.|.
T Consensus 4 ~~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~ 54 (488)
T 3dgz_A 4 QQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCV 54 (488)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHH
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeec
Confidence 3569999999999999999999999999999998 557888764
No 171
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=98.30 E-value=2.4e-07 Score=93.50 Aligned_cols=41 Identities=32% Similarity=0.532 Sum_probs=37.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
.++||+|||||++||+||..|++.|++|+|+|++ .+||.|.
T Consensus 19 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~ 59 (478)
T 3dk9_A 19 ASYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCV 59 (478)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCccc
Confidence 4689999999999999999999999999999975 7899864
No 172
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=98.30 E-value=3.5e-07 Score=90.91 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=32.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
++++||+|||||++||++|+.|+++|++|+|+|+..
T Consensus 20 ~m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 20 HMKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp ---CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred cCCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 466899999999999999999999999999999975
No 173
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=98.30 E-value=5.4e-07 Score=95.52 Aligned_cols=44 Identities=32% Similarity=0.671 Sum_probs=40.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
...+||+|||||++||+||+.|+++|++|+|||+++.+||.+..
T Consensus 387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~ 430 (729)
T 1o94_A 387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ 430 (729)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeee
Confidence 45789999999999999999999999999999999999998754
No 174
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=3.1e-07 Score=92.62 Aligned_cols=41 Identities=34% Similarity=0.542 Sum_probs=37.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
.++||+|||||++|++||..|++.|++|+|+|++ .+||.|.
T Consensus 10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~ 50 (479)
T 2hqm_A 10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAK-ALGGTCV 50 (479)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-CTTHHHH
T ss_pred ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC-CcCCcCc
Confidence 4689999999999999999999999999999997 7898875
No 175
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=98.28 E-value=4.1e-07 Score=91.96 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=39.4
Q ss_pred HHHHHh-ccCCeecCceeEEEEEeCC-eEEEEEcCCcEEEcCEEEEecCh
Q 010001 260 VINTLA-KGLDIRLGHRVTKITRHYI-GVKVTVEGGKTFVADAVVVAVPL 307 (520)
Q Consensus 260 l~~~L~-~gv~i~~~~~V~~I~~~~~-~v~V~~~~g~~~~ad~VI~a~p~ 307 (520)
+.+.|. .|++++++++|.+|+.+++ .+.|.+.+|+++.+|.||+|+..
T Consensus 237 l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~ 286 (490)
T 1fec_A 237 LTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR 286 (490)
T ss_dssp HHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCC
Confidence 344443 5999999999999998765 47888889988999999999864
No 176
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=98.27 E-value=6.2e-07 Score=87.65 Aligned_cols=35 Identities=34% Similarity=0.536 Sum_probs=33.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCCC
Q 010001 29 PSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRV 63 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~--G~~V~vlE~~~~~ 63 (520)
+||+|||||++||++|..|+++ |++|+|+|+++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~ 37 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ 37 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence 5899999999999999999999 9999999998766
No 177
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=98.26 E-value=3e-07 Score=93.34 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=41.2
Q ss_pred HHHHHHh-ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChh
Q 010001 259 PVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 308 (520)
Q Consensus 259 ~l~~~L~-~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 308 (520)
.+.+.|. .|++++++++|++|+.+++++.|.+.+|+++.+|.||+|+...
T Consensus 228 ~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~ 278 (499)
T 1xdi_A 228 VLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSV 278 (499)
T ss_dssp HHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEE
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCC
Confidence 3344443 5999999999999998877788888889899999999999643
No 178
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=98.26 E-value=3.9e-07 Score=92.18 Aligned_cols=40 Identities=38% Similarity=0.498 Sum_probs=37.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
++||+|||||++||+||..|++.|++|+|+|++ .+||.|.
T Consensus 8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~-~~GGtc~ 47 (492)
T 3ic9_A 8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGG-AYGTTCA 47 (492)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESS-CSSCHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC-CCCCccc
Confidence 489999999999999999999999999999996 5899873
No 179
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.26 E-value=3.6e-07 Score=91.56 Aligned_cols=41 Identities=27% Similarity=0.445 Sum_probs=38.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
.++||+|||||++|++||..|++.|++|+|+|+ +.+||.|.
T Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~ 44 (458)
T 1lvl_A 4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCL 44 (458)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCC
Confidence 468999999999999999999999999999999 78999875
No 180
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.25 E-value=4.9e-07 Score=91.70 Aligned_cols=41 Identities=41% Similarity=0.563 Sum_probs=37.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
+++||+|||||++|++||..|++.|++|+|+|++ .+||.|.
T Consensus 1 m~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~c~ 41 (500)
T 1onf_A 1 MVYDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCV 41 (500)
T ss_dssp -CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHH
T ss_pred CccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-CcCcccc
Confidence 3589999999999999999999999999999997 5888875
No 181
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=98.25 E-value=6e-07 Score=90.72 Aligned_cols=43 Identities=33% Similarity=0.409 Sum_probs=36.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC---------CCCceee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD---------RVGGRVH 68 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~---------~~GG~~~ 68 (520)
..++||+|||||++||+||..|+++|++|+|+|+.. .+||.|.
T Consensus 7 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~ 58 (483)
T 3dgh_A 7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCV 58 (483)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHH
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeec
Confidence 357999999999999999999999999999999521 3777764
No 182
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...
Probab=98.21 E-value=8.3e-07 Score=92.02 Aligned_cols=41 Identities=27% Similarity=0.431 Sum_probs=37.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCcee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 67 (520)
..+||+|||||++||+||+.|+++|++|+|+|+.+..||.+
T Consensus 45 ~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~ 85 (623)
T 3pl8_A 45 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK 85 (623)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred ccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCcc
Confidence 46899999999999999999999999999999999988844
No 183
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=98.17 E-value=1.8e-05 Score=79.28 Aligned_cols=42 Identities=29% Similarity=0.461 Sum_probs=36.3
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEc-C--Cc--EEEcCEEEEecCh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVE-G--GK--TFVADAVVVAVPL 307 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~-~--g~--~~~ad~VI~a~p~ 307 (520)
.|++++++++|.+|+.+++++.|++. + |+ ++.+|.||+|+..
T Consensus 223 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~ 269 (464)
T 2eq6_A 223 EGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGR 269 (464)
T ss_dssp TTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCE
T ss_pred cCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCc
Confidence 59999999999999988887777765 6 76 8999999999864
No 184
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=98.16 E-value=1.5e-06 Score=82.37 Aligned_cols=40 Identities=38% Similarity=0.434 Sum_probs=35.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
+||+|||||++|+.||+.|+++|++|+|+|++...+...+
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~tp~h 41 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTPAH 41 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSCCSSC
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcCCccc
Confidence 7999999999999999999999999999999886655443
No 185
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=98.16 E-value=9.9e-07 Score=88.54 Aligned_cols=40 Identities=35% Similarity=0.490 Sum_probs=37.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
++||+|||||++|++||..|++.|++|+|+|+++ +||.|.
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~ 45 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCL 45 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCC
Confidence 4899999999999999999999999999999977 888764
No 186
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=98.15 E-value=1.7e-06 Score=90.92 Aligned_cols=43 Identities=28% Similarity=0.512 Sum_probs=39.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
..++||+|||||++||+||..|+++|++|+|+|+++.+||.+.
T Consensus 371 ~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~ 413 (671)
T 1ps9_A 371 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN 413 (671)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeee
Confidence 4568999999999999999999999999999999999999764
No 187
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=98.15 E-value=2.1e-05 Score=78.64 Aligned_cols=43 Identities=44% Similarity=0.631 Sum_probs=38.4
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 308 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 308 (520)
.|++++++++|.+|+.+++++.|++.+|+++.+|.||+|+...
T Consensus 221 ~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~ 263 (455)
T 2yqu_A 221 QGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRR 263 (455)
T ss_dssp HTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEE
T ss_pred CCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCC
Confidence 5899999999999999888888888888899999999998653
No 188
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=98.15 E-value=9.8e-07 Score=88.67 Aligned_cols=40 Identities=28% Similarity=0.397 Sum_probs=36.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
++||+|||||++|++||..|++.|++|+|+|++ .+||.+.
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~ 42 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCL 42 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCccc
Confidence 479999999999999999999999999999997 7888764
No 189
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=98.09 E-value=2.1e-06 Score=87.60 Aligned_cols=43 Identities=12% Similarity=0.097 Sum_probs=35.8
Q ss_pred ccCCeecCceeEEEEEeCCe--EEEEEcCCcEEEcCEEEEecChhh
Q 010001 266 KGLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVPLGV 309 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~--v~V~~~~g~~~~ad~VI~a~p~~~ 309 (520)
.|++++.+ +|.+|+.++++ +.|++.+|++++||.||.|...+.
T Consensus 189 ~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S 233 (526)
T 2pyx_A 189 LGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKS 233 (526)
T ss_dssp SCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGC
T ss_pred CCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcch
Confidence 48999999 69999987554 468888877899999999998764
No 190
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=98.07 E-value=2.6e-05 Score=77.83 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=36.8
Q ss_pred ccCCeecCceeEEEEEeCCe-EEEEEcCCcEEEcCEEEEecCh
Q 010001 266 KGLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPL 307 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~-v~V~~~~g~~~~ad~VI~a~p~ 307 (520)
.|++++++++|.+|+.++++ +.|++.+|+++.+|.||+|+..
T Consensus 221 ~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~ 263 (450)
T 1ges_A 221 EGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGR 263 (450)
T ss_dssp HSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred CCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCC
Confidence 59999999999999987654 7888889989999999999864
No 191
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=98.07 E-value=3e-05 Score=77.61 Aligned_cols=42 Identities=24% Similarity=0.330 Sum_probs=37.9
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCc-EEEcCEEEEecCh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGK-TFVADAVVVAVPL 307 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~-~~~ad~VI~a~p~ 307 (520)
.|++++++++|.+|+.+++++.|++.+|+ ++.+|.||+|+..
T Consensus 220 ~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~ 262 (463)
T 2r9z_A 220 QGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGR 262 (463)
T ss_dssp TTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCE
T ss_pred CCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCC
Confidence 69999999999999988777888889998 8999999999864
No 192
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=98.06 E-value=2.2e-06 Score=85.12 Aligned_cols=39 Identities=33% Similarity=0.598 Sum_probs=35.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHh--CCCcEEEEeccCCCCce
Q 010001 28 SPSVIVIGAGMAGVAAARALHD--ASFKVVLLESRDRVGGR 66 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~--~G~~V~vlE~~~~~GG~ 66 (520)
++||+|||||++||+||+.|++ .|++|+|+|+++..++.
T Consensus 2 ~~~vvIIGgG~aGl~aA~~L~~~~~g~~Vtlie~~~~~~~~ 42 (430)
T 3h28_A 2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFT 42 (430)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECG
T ss_pred CCCEEEECccHHHHHHHHHHHcCCCCCeEEEECCCCCCCcC
Confidence 4799999999999999999999 89999999999887654
No 193
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=98.05 E-value=1.9e-06 Score=85.95 Aligned_cols=41 Identities=27% Similarity=0.296 Sum_probs=38.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHh-C------CCcEEEEeccCCCCceee
Q 010001 28 SPSVIVIGAGMAGVAAARALHD-A------SFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~-~------G~~V~vlE~~~~~GG~~~ 68 (520)
++||+|||||++||+||..|++ . |++|+|||+.+.+||.++
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~ 50 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR 50 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccc
Confidence 5799999999999999999999 7 999999999999999874
No 194
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=98.05 E-value=2.1e-06 Score=87.11 Aligned_cols=47 Identities=19% Similarity=0.170 Sum_probs=40.8
Q ss_pred HHHHHh-ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecC
Q 010001 260 VINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP 306 (520)
Q Consensus 260 l~~~L~-~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p 306 (520)
+.+.|. +|+++++++.|.+++..++++.|.+.+++++.+|.|++|+.
T Consensus 269 l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvG 316 (542)
T 4b1b_A 269 VKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIG 316 (542)
T ss_dssp HHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSC
T ss_pred HHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEccc
Confidence 334443 59999999999999999999999999998999999999984
No 195
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*
Probab=98.05 E-value=1.3e-06 Score=89.06 Aligned_cols=58 Identities=19% Similarity=0.280 Sum_probs=41.8
Q ss_pred cchhcccchhcccCCCCCCCCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 010001 6 RSNRQLRRALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (520)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~G 64 (520)
+++.......+++..........+|+||||||.+|+++|.+|++ |.+|+|||+....+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~~ 61 (536)
T 1ju2_A 4 TSDHDFSYLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLPT 61 (536)
T ss_dssp CCCCCCGGGGGEEEGGGSCSEEEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCGG
T ss_pred cccCCcccCccccCcccccccCcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCcC
Confidence 44444444444333222223456999999999999999999999 99999999976543
No 196
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=98.05 E-value=2.9e-06 Score=93.31 Aligned_cols=42 Identities=26% Similarity=0.502 Sum_probs=38.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCCCCceee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDRVGGRVH 68 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~~~~GG~~~ 68 (520)
..+||+|||||++||+||+.|+++|+ +|+|||+.+.+||.+.
T Consensus 186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~ 228 (1025)
T 1gte_A 186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLST 228 (1025)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHH
T ss_pred CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCcccc
Confidence 36899999999999999999999999 7999999999999763
No 197
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=98.03 E-value=2.7e-06 Score=92.80 Aligned_cols=41 Identities=41% Similarity=0.674 Sum_probs=39.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (520)
.+||+|||||++||+||..|++.|++|+|||+++.+||++.
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~ 168 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLL 168 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGG
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceec
Confidence 57999999999999999999999999999999999999987
No 198
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=98.02 E-value=1.9e-06 Score=87.17 Aligned_cols=41 Identities=37% Similarity=0.581 Sum_probs=38.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCCceeee
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (520)
.+||+|||||++||+||+.|+++ ++|+|||+++.+||.+..
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~ 148 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWL 148 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGG
T ss_pred cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeec
Confidence 46999999999999999999999 999999999999998753
No 199
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=98.02 E-value=3.4e-06 Score=84.23 Aligned_cols=42 Identities=29% Similarity=0.363 Sum_probs=38.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCC--CcEEEEeccCCCCceee
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGRVH 68 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G--~~V~vlE~~~~~GG~~~ 68 (520)
.++||+|||||++|++||..|++.| ++|+|||+.+.+||..+
T Consensus 5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~ 48 (460)
T 1cjc_A 5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR 48 (460)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHH
T ss_pred CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceee
Confidence 4689999999999999999999998 99999999999998764
No 200
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.02 E-value=5e-05 Score=75.94 Aligned_cols=37 Identities=30% Similarity=0.486 Sum_probs=33.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~ 63 (520)
...+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 205 (455)
T 1ebd_A 169 VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI 205 (455)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcc
Confidence 3579999999999999999999999999999996653
No 201
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=98.00 E-value=3.8e-05 Score=76.57 Aligned_cols=37 Identities=38% Similarity=0.565 Sum_probs=33.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~ 63 (520)
...+|+|||||.+|+.+|..|++.|.+|+|+|+.+++
T Consensus 148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 184 (447)
T 1nhp_A 148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP 184 (447)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccc
Confidence 4689999999999999999999999999999997643
No 202
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=98.00 E-value=3.1e-06 Score=87.91 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEec
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLES 59 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~ 59 (520)
...+||+|||||++||+||..|+++|++|+|+|+
T Consensus 105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~ 138 (598)
T 2x8g_A 105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDY 138 (598)
T ss_dssp SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred cccccEEEECCCccHHHHHHHHHhCCCeEEEEec
Confidence 3569999999999999999999999999999997
No 203
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=97.98 E-value=4.7e-06 Score=83.26 Aligned_cols=39 Identities=28% Similarity=0.495 Sum_probs=34.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCCCCce
Q 010001 28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGR 66 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~--G~~V~vlE~~~~~GG~ 66 (520)
++||+|||||++||+||+.|++. |++|+|+|+++.+++.
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~ 43 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHA 43 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC--
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccC
Confidence 47999999999999999999998 8899999999887654
No 204
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=97.95 E-value=5.8e-05 Score=75.97 Aligned_cols=42 Identities=10% Similarity=0.245 Sum_probs=36.0
Q ss_pred ccCCeecCceeEEEEEeCCe--EEEEEcCC-cEEEcCEEEEecCh
Q 010001 266 KGLDIRLGHRVTKITRHYIG--VKVTVEGG-KTFVADAVVVAVPL 307 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~--v~V~~~~g-~~~~ad~VI~a~p~ 307 (520)
.|++++++++|.+|+.++++ +.|.+.+| +++.+|.||+|+..
T Consensus 239 ~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~ 283 (479)
T 2hqm_A 239 EGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGR 283 (479)
T ss_dssp HTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCE
T ss_pred CCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCC
Confidence 59999999999999986554 67888899 78999999999864
No 205
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=97.94 E-value=4.4e-06 Score=85.43 Aligned_cols=37 Identities=27% Similarity=0.524 Sum_probs=31.7
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHh-CCCcEEEEeccC
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHD-ASFKVVLLESRD 61 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~-~G~~V~vlE~~~ 61 (520)
..+.||+||||||.+|+.+|.+|++ .|++|+|||+..
T Consensus 14 ~~~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~ 51 (526)
T 3t37_A 14 HAPNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGE 51 (526)
T ss_dssp ---CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSB
T ss_pred CCCCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCC
Confidence 3468999999999999999999998 588999999954
No 206
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=97.92 E-value=6.6e-05 Score=75.57 Aligned_cols=36 Identities=19% Similarity=0.406 Sum_probs=33.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~ 63 (520)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 218 (478)
T 1v59_A 183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI 218 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcc
Confidence 579999999999999999999999999999997643
No 207
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=97.92 E-value=0.00013 Score=72.37 Aligned_cols=43 Identities=33% Similarity=0.421 Sum_probs=36.9
Q ss_pred ccCCeecCceeEEEEE--eCCeE-EEEEcCCcEEEcCEEEEecChh
Q 010001 266 KGLDIRLGHRVTKITR--HYIGV-KVTVEGGKTFVADAVVVAVPLG 308 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~--~~~~v-~V~~~~g~~~~ad~VI~a~p~~ 308 (520)
.|++++++++|.+|+. +++++ .|.+.+|+++.+|.||+|++..
T Consensus 204 ~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~ 249 (431)
T 1q1r_A 204 AGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLI 249 (431)
T ss_dssp HTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEE
T ss_pred CCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCC
Confidence 5999999999999987 55665 6888899899999999998753
No 208
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=97.90 E-value=0.00014 Score=71.44 Aligned_cols=36 Identities=25% Similarity=0.520 Sum_probs=33.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
...+|+|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus 144 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 179 (408)
T 2gqw_A 144 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR 179 (408)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCc
Confidence 357999999999999999999999999999999764
No 209
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=97.89 E-value=8.2e-06 Score=79.70 Aligned_cols=36 Identities=22% Similarity=0.516 Sum_probs=31.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCC--CcEEEEeccC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRD 61 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G--~~V~vlE~~~ 61 (520)
.+++||+|||||++|++||..|+++| .+|+|+|+++
T Consensus 2 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~ 39 (384)
T 2v3a_A 2 SERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD 39 (384)
T ss_dssp --CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC
T ss_pred CCCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence 34689999999999999999999998 4699999864
No 210
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*
Probab=97.89 E-value=8.6e-06 Score=83.50 Aligned_cols=37 Identities=41% Similarity=0.538 Sum_probs=33.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
...+|++|||||.+|+++|++|+++|++|+|+|+...
T Consensus 5 ~~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~ 41 (546)
T 1kdg_A 5 ATPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP 41 (546)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CCceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 4579999999999999999999999999999999764
No 211
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=97.89 E-value=0.00012 Score=73.64 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=33.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~ 63 (520)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 213 (474)
T 1zmd_A 178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHV 213 (474)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCcc
Confidence 479999999999999999999999999999997653
No 212
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=97.89 E-value=4.9e-05 Score=76.56 Aligned_cols=42 Identities=29% Similarity=0.242 Sum_probs=36.3
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcC----CcEEEcCEEEEecCh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEG----GKTFVADAVVVAVPL 307 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~----g~~~~ad~VI~a~p~ 307 (520)
.|++++++++|.+|+.+++++.|.+.+ |+++.+|.||+|+..
T Consensus 239 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~ 284 (482)
T 1ojt_A 239 RFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR 284 (482)
T ss_dssp GEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred cCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCC
Confidence 589999999999999888777777776 778899999999864
No 213
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=97.89 E-value=0.00012 Score=74.12 Aligned_cols=37 Identities=27% Similarity=0.480 Sum_probs=33.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~ 63 (520)
...+++|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 181 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~ 217 (499)
T 1xdi_A 181 LPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHV 217 (499)
T ss_dssp CCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence 3478999999999999999999999999999997654
No 214
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=97.89 E-value=7.1e-06 Score=82.89 Aligned_cols=49 Identities=16% Similarity=0.267 Sum_probs=41.1
Q ss_pred HHHHHh-ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChh
Q 010001 260 VINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 308 (520)
Q Consensus 260 l~~~L~-~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 308 (520)
+.+.+. .|++++++++|.+|+.+++.+.|.+.+|+++.+|.||+|++..
T Consensus 232 ~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~ 281 (493)
T 1m6i_A 232 TMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLE 281 (493)
T ss_dssp HHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEE
T ss_pred HHHHHHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCC
Confidence 334444 5999999999999998877788888999999999999998753
No 215
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.88 E-value=8.5e-05 Score=75.16 Aligned_cols=42 Identities=17% Similarity=0.160 Sum_probs=36.4
Q ss_pred ccCCeecCceeEEEEEeCCe-EEEEEcCCcE-EEcCEEEEecCh
Q 010001 266 KGLDIRLGHRVTKITRHYIG-VKVTVEGGKT-FVADAVVVAVPL 307 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~-v~V~~~~g~~-~~ad~VI~a~p~ 307 (520)
.|++++++++|.+|+.++++ +.|.+.+|++ +.+|.||+|++.
T Consensus 230 ~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~ 273 (500)
T 1onf_A 230 NNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGR 273 (500)
T ss_dssp TTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCB
T ss_pred CCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCC
Confidence 69999999999999986544 7788889987 999999999864
No 216
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=97.87 E-value=9.2e-06 Score=81.23 Aligned_cols=37 Identities=27% Similarity=0.277 Sum_probs=34.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCCCCc
Q 010001 29 PSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGG 65 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~--G~~V~vlE~~~~~GG 65 (520)
+||+|||||++|++||..|++. |++|+|+|+++.+|.
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~ 39 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISF 39 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCB
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCc
Confidence 5899999999999999999998 999999999887653
No 217
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=97.87 E-value=8.2e-06 Score=81.20 Aligned_cols=36 Identities=31% Similarity=0.594 Sum_probs=33.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHh---CCCcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHD---ASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~---~G~~V~vlE~~~~ 62 (520)
.++||+|||||++||+||..|++ .|++|+|+|+++.
T Consensus 3 ~m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~ 41 (437)
T 3sx6_A 3 GSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDY 41 (437)
T ss_dssp TSCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSE
T ss_pred CCCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCC
Confidence 45799999999999999999999 8999999999875
No 218
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=97.86 E-value=1e-05 Score=79.62 Aligned_cols=39 Identities=26% Similarity=0.439 Sum_probs=34.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEeccCCCC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASF--KVVLLESRDRVG 64 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~--~V~vlE~~~~~G 64 (520)
.+++||+|||||++|++||..|++.|+ +|+|+|+++.++
T Consensus 5 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~ 45 (408)
T 2gqw_A 5 ALKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERP 45 (408)
T ss_dssp -CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCC
T ss_pred CCCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCc
Confidence 356899999999999999999999998 599999987654
No 219
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=97.86 E-value=0.00013 Score=73.32 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=38.1
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecCh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 307 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 307 (520)
.|++++++++|.+|+.+++++.|.+.+|+++.+|.||+|+..
T Consensus 215 ~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~ 256 (472)
T 3iwa_A 215 NDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGV 256 (472)
T ss_dssp TTCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCE
T ss_pred cCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCC
Confidence 599999999999999888888888889989999999999865
No 220
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=97.86 E-value=8.7e-05 Score=74.90 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=33.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
...+|+|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus 173 ~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ 208 (492)
T 3ic9_A 173 LPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGS 208 (492)
T ss_dssp CCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTC
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCc
Confidence 457999999999999999999999999999999654
No 221
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=97.84 E-value=9.9e-05 Score=74.49 Aligned_cols=42 Identities=29% Similarity=0.389 Sum_probs=36.8
Q ss_pred ccCCeecCceeEEEEEeCC-eEEEEEcCCcEEEcCEEEEecCh
Q 010001 266 KGLDIRLGHRVTKITRHYI-GVKVTVEGGKTFVADAVVVAVPL 307 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~-~v~V~~~~g~~~~ad~VI~a~p~ 307 (520)
.|++++++++|.+|+.+++ .+.|++.+|+++.+|.||+|+..
T Consensus 248 ~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~ 290 (495)
T 2wpf_A 248 NGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGR 290 (495)
T ss_dssp TTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred CCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCC
Confidence 6999999999999998765 47888889989999999999864
No 222
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=97.83 E-value=0.00012 Score=73.39 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=32.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
...+|+|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus 170 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 205 (464)
T 2a8x_A 170 LPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPR 205 (464)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 347999999999999999999999999999999654
No 223
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=97.83 E-value=9.4e-05 Score=75.26 Aligned_cols=42 Identities=26% Similarity=0.388 Sum_probs=36.6
Q ss_pred ccCCeecCceeEEEEEeCCe----EEEEEcCCc-EEEcCEEEEecCh
Q 010001 266 KGLDIRLGHRVTKITRHYIG----VKVTVEGGK-TFVADAVVVAVPL 307 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~----v~V~~~~g~-~~~ad~VI~a~p~ 307 (520)
.|++++++++|++|+.++++ +.|++.+|+ ++.+|.||+|+..
T Consensus 268 ~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~ 314 (523)
T 1mo9_A 268 QGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGE 314 (523)
T ss_dssp TTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCC
T ss_pred CCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCC
Confidence 69999999999999986655 778888887 8999999999864
No 224
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=97.82 E-value=0.00017 Score=71.98 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=36.7
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecCh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 307 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 307 (520)
.|++++++++|++|+..++++.|.+.+| ++.+|.||+|++.
T Consensus 202 ~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~ 242 (452)
T 3oc4_A 202 QAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNL 242 (452)
T ss_dssp TTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCC
T ss_pred cCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCC
Confidence 5899999999999998888888888877 8999999999864
No 225
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=97.81 E-value=0.00018 Score=72.12 Aligned_cols=43 Identities=23% Similarity=0.265 Sum_probs=34.7
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEc--CC--cEEEcCEEEEecChh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVE--GG--KTFVADAVVVAVPLG 308 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~--~g--~~~~ad~VI~a~p~~ 308 (520)
.|++++++++|.+|+.+++++.|.+. +| +++.+|.||+|+...
T Consensus 229 ~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~ 275 (468)
T 2qae_A 229 EKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRR 275 (468)
T ss_dssp TCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEE
T ss_pred CCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcc
Confidence 69999999999999988777777665 66 578999999998643
No 226
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=97.81 E-value=0.00011 Score=74.03 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=33.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhC---CCcEEEEeccCCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDA---SFKVVLLESRDRV 63 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~---G~~V~vlE~~~~~ 63 (520)
...+++|||||.+|+-+|..|++. |.+|+|+|+.+++
T Consensus 186 ~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~ 225 (490)
T 1fec_A 186 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI 225 (490)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred cCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCc
Confidence 356999999999999999999999 9999999997653
No 227
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.78 E-value=8.2e-05 Score=74.36 Aligned_cols=36 Identities=25% Similarity=0.481 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
...+|+|||||.+|+.+|..|++.|.+|+|+|+.++
T Consensus 170 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 205 (458)
T 1lvl_A 170 LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER 205 (458)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred cCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCc
Confidence 357999999999999999999999999999999754
No 228
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=97.77 E-value=0.00018 Score=74.03 Aligned_cols=34 Identities=32% Similarity=0.537 Sum_probs=31.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+|+|||||.+|+-+|..|++.|.+|+++|+.+
T Consensus 151 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 184 (565)
T 3ntd_A 151 VEHATVVGGGFIGLEMMESLHHLGIKTTLLELAD 184 (565)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCC
Confidence 4699999999999999999999999999999954
No 229
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=97.75 E-value=0.00034 Score=69.77 Aligned_cols=35 Identities=26% Similarity=0.603 Sum_probs=32.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
..+|+|||||.+|+-.|..|++.|.+|+|+|+.++
T Consensus 149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 183 (452)
T 2cdu_A 149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHER 183 (452)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCc
Confidence 56899999999999999999999999999998654
No 230
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.72 E-value=2.1e-05 Score=76.21 Aligned_cols=36 Identities=19% Similarity=0.435 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~ 63 (520)
..-||+|||||++|++||..|++.| +|+|+|+++..
T Consensus 7 ~~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~ 42 (367)
T 1xhc_A 7 HGSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVP 42 (367)
T ss_dssp --CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSC
T ss_pred CCCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCC
Confidence 3469999999999999999999999 99999997653
No 231
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=97.71 E-value=0.00023 Score=72.22 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
-+.+++|||||..||-.|..+++.|.+|+|+++.
T Consensus 222 lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~ 255 (542)
T 4b1b_A 222 DPGKTLVVGASYVALECSGFLNSLGYDVTVAVRS 255 (542)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESS
T ss_pred CCceEEEECCCHHHHHHHHHHHhcCCeEEEeccc
Confidence 4578999999999999999999999999999874
No 232
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.70 E-value=0.0002 Score=71.87 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=32.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
...+|+|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus 176 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 211 (470)
T 1dxl_A 176 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE 211 (470)
T ss_dssp CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence 357999999999999999999999999999999654
No 233
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=97.69 E-value=0.00032 Score=70.73 Aligned_cols=36 Identities=36% Similarity=0.495 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
...+|+|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus 193 ~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ 228 (490)
T 2bc0_A 193 DIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDT 228 (490)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccc
Confidence 457999999999999999999999999999999654
No 234
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=97.68 E-value=0.00029 Score=70.83 Aligned_cols=42 Identities=36% Similarity=0.377 Sum_probs=36.0
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCC---cEEEcCEEEEecCh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVPL 307 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g---~~~~ad~VI~a~p~ 307 (520)
.|++++++++|.+|+.+++++.|...++ +++.+|.||+|++.
T Consensus 234 ~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~ 278 (476)
T 3lad_A 234 QGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGR 278 (476)
T ss_dssp TTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCE
T ss_pred CCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCC
Confidence 5899999999999999888877776654 57899999999964
No 235
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=97.68 E-value=0.00036 Score=70.32 Aligned_cols=35 Identities=29% Similarity=0.355 Sum_probs=30.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHh----CCCcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHD----ASFKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~----~G~~V~vlE~~~~ 62 (520)
..+|+|||||.+|+-+|..|++ .|.+|+++++.+.
T Consensus 180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~ 218 (493)
T 1m6i_A 180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG 218 (493)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcc
Confidence 5689999999999999999987 4788999988654
No 236
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=97.68 E-value=0.00029 Score=70.58 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=35.8
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecChh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 308 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 308 (520)
.|++++++++|.+|+.+++.+.|.+.+ .++.+|.||+|+...
T Consensus 229 ~Gv~i~~~~~v~~i~~~~~~~~v~~~~-~~i~aD~Vv~a~G~~ 270 (467)
T 1zk7_A 229 EGIEVLEHTQASQVAHMDGEFVLTTTH-GELRADKLLVATGRT 270 (467)
T ss_dssp TTCEEETTCCEEEEEEETTEEEEEETT-EEEEESEEEECSCEE
T ss_pred CCCEEEcCCEEEEEEEeCCEEEEEECC-cEEEcCEEEECCCCC
Confidence 699999999999999887777777764 489999999998653
No 237
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=97.68 E-value=2.4e-05 Score=78.94 Aligned_cols=37 Identities=16% Similarity=0.534 Sum_probs=33.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
+++++|+|||||.+|+++|..|++++++|+|+|++++
T Consensus 40 ~~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~ 76 (502)
T 4g6h_A 40 SDKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY 76 (502)
T ss_dssp CSSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred CCCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence 4567999999999999999999999999999999864
No 238
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Probab=97.67 E-value=2.7e-05 Score=78.80 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=34.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~G 64 (520)
..+|++|||||++|+++|+.|++.|++|+|+|+....+
T Consensus 4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~ 41 (504)
T 1n4w_A 4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN 41 (504)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 46899999999999999999999999999999987554
No 239
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=97.67 E-value=0.00035 Score=70.48 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
...+|+|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus 197 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 232 (491)
T 3urh_A 197 VPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDT 232 (491)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccc
Confidence 357899999999999999999999999999988654
No 240
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}
Probab=97.67 E-value=2.5e-05 Score=79.90 Aligned_cols=37 Identities=22% Similarity=0.384 Sum_probs=33.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCC-CcEEEEeccCC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRDR 62 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G-~~V~vlE~~~~ 62 (520)
...||+||||||.||+++|..|++.| .+|+||||...
T Consensus 4 ~~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~ 41 (577)
T 3q9t_A 4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG 41 (577)
T ss_dssp TCEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred CCcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 35699999999999999999999997 69999999654
No 241
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=97.66 E-value=0.00018 Score=72.34 Aligned_cols=36 Identities=28% Similarity=0.489 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
...+|+|||||.+|+.+|..|++.|.+|+|+|+.++
T Consensus 185 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 220 (480)
T 3cgb_A 185 KVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDH 220 (480)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGG
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCc
Confidence 457999999999999999999999999999999654
No 242
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=97.63 E-value=3.2e-05 Score=76.68 Aligned_cols=35 Identities=34% Similarity=0.621 Sum_probs=31.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCC--CcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G--~~V~vlE~~~~ 62 (520)
.++|+|||||.+|++||..|++.+ ++|+|+|+++.
T Consensus 2 ~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~ 38 (430)
T 3hyw_A 2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPY 38 (430)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSE
T ss_pred CCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCC
Confidence 358999999999999999999875 79999999875
No 243
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=97.62 E-value=0.00037 Score=69.75 Aligned_cols=41 Identities=27% Similarity=0.364 Sum_probs=36.2
Q ss_pred ccCCeecCceeEEEEEeCCe-EEEE-EcCCcEEEcCEEEEecCh
Q 010001 266 KGLDIRLGHRVTKITRHYIG-VKVT-VEGGKTFVADAVVVAVPL 307 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~-v~V~-~~~g~~~~ad~VI~a~p~ 307 (520)
.|++++++++|.+|+.++++ +.|. +.+|+ +.+|.||+|+..
T Consensus 224 ~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~ 266 (463)
T 4dna_A 224 KGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGR 266 (463)
T ss_dssp TTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCE
T ss_pred CCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCc
Confidence 69999999999999988665 6788 88996 999999999964
No 244
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=97.61 E-value=3.7e-05 Score=76.31 Aligned_cols=36 Identities=19% Similarity=0.474 Sum_probs=31.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCC--cEEEEeccCCCC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASF--KVVLLESRDRVG 64 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~--~V~vlE~~~~~G 64 (520)
++|+|||||++|++||..|++.|. +|+|+|+++..+
T Consensus 1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~ 38 (437)
T 4eqs_A 1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS 38 (437)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCC
Confidence 479999999999999999999884 799999987654
No 245
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=97.59 E-value=0.00062 Score=68.10 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=36.5
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEc---CCc--EEEcCEEEEecChh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVE---GGK--TFVADAVVVAVPLG 308 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~---~g~--~~~ad~VI~a~p~~ 308 (520)
.|++++++++|++|+.+++++.|++. +|+ ++.+|.||+|+...
T Consensus 329 ~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~ 376 (463)
T 3s5w_A 329 PRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYE 376 (463)
T ss_dssp CCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEE
T ss_pred CCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCC
Confidence 48899999999999999888877766 675 48999999998753
No 246
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Probab=97.59 E-value=3.4e-05 Score=78.84 Aligned_cols=36 Identities=28% Similarity=0.572 Sum_probs=32.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhC-CCcEEEEeccC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRD 61 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~-G~~V~vlE~~~ 61 (520)
...||+||||||.||+++|.+|++. |++|+|||+..
T Consensus 17 ~~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~ 53 (583)
T 3qvp_A 17 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS 53 (583)
T ss_dssp TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred CCCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 3579999999999999999999985 89999999965
No 247
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=97.53 E-value=0.00055 Score=68.78 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
...+|+|||||.+|+-+|..|++.|.+|+|+++.++
T Consensus 186 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 221 (478)
T 3dk9_A 186 LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK 221 (478)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred cCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCc
Confidence 357999999999999999999999999999998553
No 248
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=97.53 E-value=5.5e-05 Score=74.27 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=36.7
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCcEEEcCEEEEecCh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 307 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 307 (520)
.|+++++++.|..++.+++...|.+.+|+++.+|.||+++|.
T Consensus 215 ~gi~v~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vi~~~g~ 256 (401)
T 3vrd_B 215 ALIEWHPGPDAAVVKTDTEAMTVETSFGETFKAAVINLIPPQ 256 (401)
T ss_dssp CSEEEECTTTTCEEEEETTTTEEEETTSCEEECSEEEECCCE
T ss_pred cCcEEEeCceEEEEEecccceEEEcCCCcEEEeeEEEEecCc
Confidence 477999999999999888888888999999999999998753
No 249
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*
Probab=97.53 E-value=5.9e-05 Score=76.36 Aligned_cols=37 Identities=27% Similarity=0.397 Sum_probs=34.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
...+|++|||||.+|+++|+.|++.|.+|+|+|+...
T Consensus 9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~ 45 (507)
T 1coy_A 9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS 45 (507)
T ss_dssp TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 4569999999999999999999999999999999754
No 250
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=97.53 E-value=0.0017 Score=66.07 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=33.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
...+|+|||+|.+|+-+|..|++.|.+|+|+++.+.
T Consensus 184 ~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~ 219 (545)
T 3uox_A 184 TGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN 219 (545)
T ss_dssp BTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred CCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence 457999999999999999999999999999999764
No 251
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=97.51 E-value=0.00052 Score=70.96 Aligned_cols=35 Identities=29% Similarity=0.515 Sum_probs=32.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
..+|+|||||.+|+-+|..|++.|.+|+++|+.++
T Consensus 187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 221 (588)
T 3ics_A 187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQ 221 (588)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCc
Confidence 57899999999999999999999999999998553
No 252
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=97.50 E-value=0.00049 Score=65.53 Aligned_cols=36 Identities=31% Similarity=0.433 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
...+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 172 ~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~ 207 (338)
T 3itj_A 172 RNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDH 207 (338)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCc
Confidence 357899999999999999999999999999998543
No 253
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Probab=97.50 E-value=4.2e-05 Score=78.01 Aligned_cols=36 Identities=31% Similarity=0.403 Sum_probs=33.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHh-CCCcEEEEeccCCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHD-ASFKVVLLESRDRV 63 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~-~G~~V~vlE~~~~~ 63 (520)
.+|+||||||.+|+++|.+|++ .|++|+|||+....
T Consensus 2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~ 38 (566)
T 3fim_B 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD 38 (566)
T ss_dssp CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence 4899999999999999999999 69999999997654
No 254
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=97.48 E-value=0.00069 Score=67.80 Aligned_cols=36 Identities=25% Similarity=0.434 Sum_probs=32.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
...+|+|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus 171 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 206 (466)
T 3l8k_A 171 LPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDR 206 (466)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCc
Confidence 357999999999999999999999999999998653
No 255
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*
Probab=97.46 E-value=7.4e-05 Score=76.29 Aligned_cols=37 Identities=35% Similarity=0.476 Sum_probs=34.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhC-CCcEEEEeccCCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRDRV 63 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~-G~~V~vlE~~~~~ 63 (520)
+.+|++|||||.+|+++|++|+++ |.+|+|||+....
T Consensus 12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~ 49 (546)
T 2jbv_A 12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD 49 (546)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence 569999999999999999999998 8999999997654
No 256
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1
Probab=97.42 E-value=9.9e-05 Score=75.96 Aligned_cols=36 Identities=25% Similarity=0.479 Sum_probs=33.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHh-CCCcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHD-ASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~-~G~~V~vlE~~~~ 62 (520)
..+|++|||||.+|+++|..|++ .|++|+|+|+...
T Consensus 23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~ 59 (587)
T 1gpe_A 23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY 59 (587)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCc
Confidence 46999999999999999999999 7999999999654
No 257
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=97.42 E-value=0.0013 Score=62.03 Aligned_cols=35 Identities=37% Similarity=0.496 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
...+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 144 ~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 178 (320)
T 1trb_A 144 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 178 (320)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCC
Confidence 35689999999999999999999999999998854
No 258
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=97.40 E-value=0.00067 Score=67.21 Aligned_cols=35 Identities=23% Similarity=0.450 Sum_probs=32.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
..+++|||||..|+-+|..|++.|.+|+|+|+.++
T Consensus 147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ 181 (437)
T 4eqs_A 147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDK 181 (437)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSC
T ss_pred CcEEEEECCccchhhhHHHHHhcCCcceeeeeecc
Confidence 46899999999999999999999999999998654
No 259
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=97.39 E-value=0.0011 Score=62.17 Aligned_cols=35 Identities=34% Similarity=0.461 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
...+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 142 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 176 (311)
T 2q0l_A 142 KNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRD 176 (311)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCC
Confidence 34799999999999999999999999999998854
No 260
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=97.39 E-value=0.0013 Score=66.12 Aligned_cols=33 Identities=21% Similarity=0.426 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEec
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLES 59 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~ 59 (520)
...+++|||||.+|+-+|..|++.|.+|+|+++
T Consensus 186 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~ 218 (483)
T 3dgh_A 186 EPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVR 218 (483)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeC
Confidence 346899999999999999999999999999987
No 261
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=97.36 E-value=0.00078 Score=67.06 Aligned_cols=35 Identities=26% Similarity=0.494 Sum_probs=32.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus 148 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 182 (449)
T 3kd9_A 148 VENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGER 182 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCc
Confidence 46999999999999999999999999999998653
No 262
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=97.32 E-value=0.0027 Score=64.67 Aligned_cols=36 Identities=17% Similarity=0.349 Sum_probs=33.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
...+|+|||+|.+|+-+|..|++.|.+|+|+++.+.
T Consensus 190 ~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~ 225 (549)
T 4ap3_A 190 TGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN 225 (549)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred CCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence 467999999999999999999999999999999654
No 263
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=97.31 E-value=0.0011 Score=63.10 Aligned_cols=34 Identities=26% Similarity=0.450 Sum_probs=31.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 152 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~ 185 (335)
T 2zbw_A 152 GKRVLIVGGGDSAVDWALNLLDTARRITLIHRRP 185 (335)
T ss_dssp TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCC
Confidence 5799999999999999999999999999999854
No 264
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=97.28 E-value=0.0014 Score=63.15 Aligned_cols=42 Identities=10% Similarity=0.211 Sum_probs=34.9
Q ss_pred cc-CCeecCceeEEEEEeCCeEEEEEcCCcEEE-cCEEEEecCh
Q 010001 266 KG-LDIRLGHRVTKITRHYIGVKVTVEGGKTFV-ADAVVVAVPL 307 (520)
Q Consensus 266 ~g-v~i~~~~~V~~I~~~~~~v~V~~~~g~~~~-ad~VI~a~p~ 307 (520)
.| ++++++++|.+|+.+++.+.|.+.+|+++. +|.||+|+..
T Consensus 227 ~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~ 270 (369)
T 3d1c_A 227 GARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGF 270 (369)
T ss_dssp TCCEEEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCB
T ss_pred CCcEEEecCcEEEEEEecCCceEEEecCCeEeccCCceEEeecc
Confidence 45 899999999999887777788888897665 5999999764
No 265
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=97.26 E-value=0.0019 Score=65.08 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
...+++|||||.+|+-.|..|++.|.+|+|+++.
T Consensus 184 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~ 217 (488)
T 3dgz_A 184 SPGKTLVVGASYVALECAGFLTGIGLDTTVMMRS 217 (488)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcC
Confidence 3457999999999999999999999999999873
No 266
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=97.22 E-value=0.002 Score=60.98 Aligned_cols=34 Identities=32% Similarity=0.438 Sum_probs=31.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 152 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 185 (325)
T 2q7v_A 152 GKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRD 185 (325)
T ss_dssp TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 4789999999999999999999999999999854
No 267
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=97.15 E-value=0.00098 Score=64.18 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=31.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
..+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 163 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~ 197 (360)
T 3ab1_A 163 GKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHE 197 (360)
T ss_dssp TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCC
Confidence 46899999999999999999999999999998643
No 268
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=97.09 E-value=0.0032 Score=59.25 Aligned_cols=35 Identities=37% Similarity=0.499 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
...+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 153 ~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~ 187 (323)
T 3f8d_A 153 KNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRD 187 (323)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCC
Confidence 35789999999999999999999999999998854
No 269
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=97.01 E-value=0.0027 Score=60.11 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=31.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~ 187 (332)
T 3lzw_A 154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRD 187 (332)
T ss_dssp TCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSS
T ss_pred CCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecC
Confidence 5789999999999999999999999999998854
No 270
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=97.01 E-value=0.005 Score=57.95 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=31.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+|+|||||.+|+-.|..|++.|.+|+++++.+
T Consensus 155 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~ 188 (319)
T 3cty_A 155 GKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMP 188 (319)
T ss_dssp TSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCC
Confidence 4689999999999999999999999999998854
No 271
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=96.92 E-value=0.0037 Score=58.66 Aligned_cols=35 Identities=29% Similarity=0.428 Sum_probs=31.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
..+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 147 ~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~ 181 (315)
T 3r9u_A 147 NKEVAVLGGGDTALEEALYLANICSKIYLIHRRDE 181 (315)
T ss_dssp TSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSS
T ss_pred cCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCC
Confidence 47899999999999999999999999999988543
No 272
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=96.89 E-value=0.0039 Score=57.91 Aligned_cols=39 Identities=26% Similarity=0.343 Sum_probs=32.2
Q ss_pred CCCCcEEEeeccccCcCCccchHHHHHHHHHHHHHHHHHHH
Q 010001 453 IPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 493 (520)
Q Consensus 453 ~p~~~l~~aG~~~~~~~~g~~egAi~SG~~aA~~i~~~l~~ 493 (520)
+..+|+|.+||.... +.....|+.+|..||..|...|..
T Consensus 255 t~~~~vya~GD~~~~--~~~~~~A~~~g~~aa~~i~~~l~~ 293 (297)
T 3fbs_A 255 TTARGIFACGDVARP--AGSVALAVGDGAMAGAAAHRSILF 293 (297)
T ss_dssp CSSTTEEECSGGGCT--TCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCEEEEeecCCc--hHHHHHHHHhHHHHHHHHHHHHhh
Confidence 356799999998774 357778999999999999887753
No 273
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=96.89 E-value=0.0076 Score=61.03 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=30.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEec
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLES 59 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~ 59 (520)
+.+++|||||.+|+-.|..|++.|.+|+|+++
T Consensus 210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~ 241 (519)
T 3qfa_A 210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVR 241 (519)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEec
Confidence 45799999999999999999999999999987
No 274
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=96.63 E-value=0.003 Score=51.41 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=33.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+.+|+|||+|-.|...|..|.+.|++|+++|++.
T Consensus 5 ~~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~ 40 (140)
T 3fwz_A 5 DICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR 40 (140)
T ss_dssp CCCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 456789999999999999999999999999999965
No 275
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=96.63 E-value=0.0042 Score=65.32 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=32.4
Q ss_pred CCCeEEEEc--CCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 27 RSPSVIVIG--AGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIG--aGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
...+|+||| +|.+|+-+|..|++.|.+|+++++.+.
T Consensus 522 ~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~ 559 (690)
T 3k30_A 522 DGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQ 559 (690)
T ss_dssp SSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccc
Confidence 446799999 999999999999999999999998654
No 276
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=96.61 E-value=0.0076 Score=60.65 Aligned_cols=42 Identities=21% Similarity=0.261 Sum_probs=31.8
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCCc----EEEcCEEEEecCh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGGK----TFVADAVVVAVPL 307 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g~----~~~ad~VI~a~p~ 307 (520)
.|++++++++|.+|+.++....+...+|+ ++.+|.||.|+..
T Consensus 285 ~GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv 330 (502)
T 4g6h_A 285 TSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGN 330 (502)
T ss_dssp TTCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCE
T ss_pred cceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCC
Confidence 59999999999998644333445566764 6899999999853
No 277
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=96.55 E-value=0.0018 Score=62.87 Aligned_cols=36 Identities=19% Similarity=0.284 Sum_probs=33.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~ 63 (520)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 146 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~ 181 (385)
T 3klj_A 146 KGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYP 181 (385)
T ss_dssp HSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCcc
Confidence 468999999999999999999999999999997654
No 278
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=96.53 E-value=0.0021 Score=60.35 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=32.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
..+|+|||||..|+-+|..|++.|.+|+|+|+.++
T Consensus 145 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ 179 (312)
T 4gcm_A 145 NKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDE 179 (312)
T ss_dssp TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccc
Confidence 46899999999999999999999999999998654
No 279
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=96.52 E-value=0.0031 Score=52.33 Aligned_cols=35 Identities=20% Similarity=0.433 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+..+|+|||+|..|+..|..|.+.|++|+++|++.
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~ 52 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE 52 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 45799999999999999999999999999999864
No 280
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=96.46 E-value=0.0032 Score=51.09 Aligned_cols=34 Identities=24% Similarity=0.478 Sum_probs=31.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
.++|+|||+|..|...|..|.+.|++|+++|++.
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~ 37 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK 37 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 4689999999999999999999999999999854
No 281
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=96.40 E-value=0.0031 Score=49.35 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCC-CcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G-~~V~vlE~~~ 61 (520)
+.++|+|+|+|..|...|..|.+.| ++|++++++.
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL 39 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence 4578999999999999999999999 8999999854
No 282
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=96.39 E-value=0.0023 Score=63.32 Aligned_cols=36 Identities=17% Similarity=0.387 Sum_probs=32.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~ 63 (520)
.++|.|||.|.+|+++|..|+++|++|+++|.....
T Consensus 5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~ 40 (439)
T 2x5o_A 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP 40 (439)
T ss_dssp TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC
T ss_pred CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc
Confidence 457999999999999999999999999999997654
No 283
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=96.29 E-value=0.0046 Score=50.34 Aligned_cols=34 Identities=35% Similarity=0.441 Sum_probs=31.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+.+|+|+|+|-.|...|..|.++|++|+++|+++
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~ 39 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK 39 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4689999999999999999999999999999864
No 284
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=96.20 E-value=0.0044 Score=59.72 Aligned_cols=35 Identities=29% Similarity=0.504 Sum_probs=32.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~ 63 (520)
.+++|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 178 (367)
T 1xhc_A 144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF 178 (367)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCee
Confidence 68999999999999999999999999999997653
No 285
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=96.08 E-value=0.0048 Score=61.19 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=31.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+|.|||.|.+|+++|..|.++|++|++.|++.
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~ 42 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP 42 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 5789999999999999999999999999999864
No 286
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=96.07 E-value=0.0053 Score=57.60 Aligned_cols=34 Identities=32% Similarity=0.495 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
...+|+|||||..|+-+|..|++.|.+|+|+|+.
T Consensus 151 ~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~ 184 (314)
T 4a5l_A 151 RNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRR 184 (314)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSS
T ss_pred CCCeEEEECCChHHHHHHHHHHHhCCeeeeeccc
Confidence 3578999999999999999999999999999974
No 287
>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}
Probab=96.07 E-value=0.0051 Score=59.94 Aligned_cols=50 Identities=20% Similarity=0.245 Sum_probs=34.8
Q ss_pred cchhcccchhcccCCCCCCCCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 6 RSNRQLRRALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
-++++..++..|.. ..+.+|+|||.|..||..|..|+++|++|+.+|-+.
T Consensus 5 ~~~~~~~~~~~p~~------~~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~ 54 (444)
T 3vtf_A 5 HHHHHHSSGLVPRG------SHMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP 54 (444)
T ss_dssp --------CCCCTT------CCCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred cccccccCCcCCCC------CCCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 34444444444322 356799999999999999999999999999999653
No 288
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=95.99 E-value=0.019 Score=62.64 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=31.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+|+|||+|.+|+-+|..|++.|.+|+|+|+.+
T Consensus 284 gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~ 317 (965)
T 2gag_A 284 GARIAVATTNDSAYELVRELAATGGVVAVIDARS 317 (965)
T ss_dssp CSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCS
T ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCC
Confidence 4689999999999999999999999999999854
No 289
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=95.88 E-value=0.01 Score=49.02 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=31.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
+.+|+|+|+|-.|...|..|.+.|++|+++|++
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence 458999999999999999999999999999986
No 290
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=95.85 E-value=0.0077 Score=56.74 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=31.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
.++|+|||+|.-|.+.|..|+++|++|+++.+++
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (320)
T 3i83_A 2 SLNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD 35 (320)
T ss_dssp -CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence 4789999999999999999999999999999864
No 291
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=95.68 E-value=0.008 Score=56.38 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=30.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
.++|+|||+|.-|.+.|..|+++|++|+++.++.
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (312)
T 3hn2_A 2 SLRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD 35 (312)
T ss_dssp --CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence 4689999999999999999999999999999854
No 292
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=95.67 E-value=0.01 Score=48.20 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=30.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+|+|+|+|..|...|..|.+.|++|+++|++.
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~ 39 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE 39 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3579999999999999999999999999999753
No 293
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=95.62 E-value=0.011 Score=55.05 Aligned_cols=34 Identities=24% Similarity=0.489 Sum_probs=31.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+|+|||||..|...|..++.+|++|+++|.++
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~ 39 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP 39 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence 4589999999999999999999999999999854
No 294
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=95.61 E-value=0.013 Score=57.33 Aligned_cols=38 Identities=21% Similarity=0.478 Sum_probs=34.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~G 64 (520)
...+|+|||||.+|+-+|..|++.|.+|+|+|+.+++.
T Consensus 142 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l 179 (410)
T 3ef6_A 142 SATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELL 179 (410)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccc
Confidence 35799999999999999999999999999999987654
No 295
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Probab=95.59 E-value=0.012 Score=55.37 Aligned_cols=37 Identities=24% Similarity=0.376 Sum_probs=33.2
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccC
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~~ 61 (520)
|.++++|+|||+|..|.+.|..|+++|+ +|+++|.+.
T Consensus 1 M~~~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~ 38 (317)
T 2ewd_A 1 MIERRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE 38 (317)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence 3456799999999999999999999998 999999864
No 296
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=95.58 E-value=0.014 Score=54.50 Aligned_cols=33 Identities=30% Similarity=0.492 Sum_probs=30.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
..+|+|||+|..|.+.|..|+++|++|+++|++
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~ 47 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQT 47 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 357999999999999999999999999999884
No 297
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.55 E-value=0.012 Score=50.37 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=31.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhC-CCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~-G~~V~vlE~~~ 61 (520)
..+|+|||+|..|...|..|.+. |++|+++|++.
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~ 73 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE 73 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence 56899999999999999999999 99999999864
No 298
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=95.54 E-value=0.014 Score=53.75 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=31.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+|+|||+|.-|...|..|+++|++|+++|++.
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT 37 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3689999999999999999999999999998854
No 299
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=95.53 E-value=0.012 Score=58.11 Aligned_cols=33 Identities=18% Similarity=0.400 Sum_probs=31.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
++|+|||+|..|+..|..|+++|++|++++++.
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~ 35 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR 35 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence 689999999999999999999999999999864
No 300
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}
Probab=95.49 E-value=0.021 Score=56.09 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=32.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
+-.+|+|||+|..|...|..|+++|++|+++|.+..
T Consensus 53 ~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e 88 (460)
T 3k6j_A 53 DVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ 88 (460)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence 346899999999999999999999999999998754
No 301
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=95.45 E-value=0.011 Score=53.62 Aligned_cols=35 Identities=20% Similarity=0.384 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+.|+|||||-.|+..|..|.+.|++|+|++...
T Consensus 12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 45789999999999999999999999999999754
No 302
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=95.43 E-value=0.012 Score=51.93 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=30.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
++|+|||+|-.|...|..|.++|++|+++|++.
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~ 33 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDR 33 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 479999999999999999999999999999864
No 303
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Probab=95.38 E-value=0.019 Score=53.96 Aligned_cols=36 Identities=25% Similarity=0.478 Sum_probs=32.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~~ 61 (520)
++.++|+|||||-.|.+.|..|+.+|+ +|.++|.+.
T Consensus 2 ~~~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~ 38 (322)
T 1t2d_A 2 APKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK 38 (322)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence 345799999999999999999999998 999999754
No 304
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=95.31 E-value=0.011 Score=54.84 Aligned_cols=34 Identities=29% Similarity=0.390 Sum_probs=31.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
.++|+|||+|.-|.+.|..|+++|++|++++++.
T Consensus 2 ~mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~ 35 (294)
T 3g17_A 2 SLSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA 35 (294)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence 4689999999999999999999999999999863
No 305
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=95.30 E-value=0.013 Score=57.88 Aligned_cols=36 Identities=31% Similarity=0.482 Sum_probs=33.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhC-CC-cEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDA-SF-KVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~-G~-~V~vlE~~~~ 62 (520)
+.++|+|||+|.-|+..|..|+++ |+ +|+++|.+..
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~ 54 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK 54 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence 457999999999999999999999 99 9999998765
No 306
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=95.30 E-value=0.019 Score=53.78 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=32.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+++|.|||.|..|...|..|+++|++|++++++.
T Consensus 19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~ 54 (310)
T 3doj_A 19 SHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTL 54 (310)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred ccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 345799999999999999999999999999999865
No 307
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=95.29 E-value=0.019 Score=50.16 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
..++|+|||+|..|.+.|..|+++|++|++++++..
T Consensus 18 ~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~ 53 (209)
T 2raf_A 18 QGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ 53 (209)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 457899999999999999999999999999998654
No 308
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=95.29 E-value=0.017 Score=54.54 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=30.8
Q ss_pred CCeEEEEcCCHHHHH-HHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVA-AARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLs-aA~~L~~~G~~V~vlE~~~ 61 (520)
.++|.|||.|-+|++ +|..|.++|++|++.|++.
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~ 38 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM 38 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 468999999999997 7889999999999999864
No 309
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=95.26 E-value=0.014 Score=54.32 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=32.5
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
|.++++|.|||.|..|...|..|+++|++|++++++..
T Consensus 12 M~~~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~ 49 (296)
T 3qha_A 12 TTEQLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE 49 (296)
T ss_dssp ---CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred ccCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 44467999999999999999999999999999998653
No 310
>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*
Probab=95.26 E-value=0.016 Score=57.63 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
-.++|+|||+|..|+..|..|+++|++|++++.+.
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~ 41 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ 41 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 35899999999999999999999999999999753
No 311
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=95.25 E-value=0.015 Score=59.02 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=33.7
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
....+|+|||+|.+|+-+|..|++.|.+|+|+++.+.
T Consensus 176 ~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~ 212 (540)
T 3gwf_A 176 LAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ 212 (540)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred cccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence 3467999999999999999999999999999999754
No 312
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=95.25 E-value=0.017 Score=55.13 Aligned_cols=34 Identities=29% Similarity=0.332 Sum_probs=31.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
.++|+|||+|.-|.+.|..|+++|++|+++++++
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~ 62 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYES 62 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4799999999999999999999999999998853
No 313
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=95.20 E-value=0.1 Score=54.60 Aligned_cols=40 Identities=25% Similarity=0.373 Sum_probs=31.8
Q ss_pred ccCCeecCceeEEEEEeCCeEEEEEcCC--cEEEcCEEEEecChh
Q 010001 266 KGLDIRLGHRVTKITRHYIGVKVTVEGG--KTFVADAVVVAVPLG 308 (520)
Q Consensus 266 ~gv~i~~~~~V~~I~~~~~~v~V~~~~g--~~~~ad~VI~a~p~~ 308 (520)
.|++++++++|++|. ++++.++ .+| +++.+|.||+|+...
T Consensus 586 ~GV~v~~~~~v~~i~--~~~v~~~-~~G~~~~i~~D~Vi~a~G~~ 627 (671)
T 1ps9_A 586 RGVKMIPGVSYQKID--DDGLHVV-INGETQVLAVDNVVICAGQE 627 (671)
T ss_dssp TTCEEECSCEEEEEE--TTEEEEE-ETTEEEEECCSEEEECCCEE
T ss_pred cCCEEEeCcEEEEEe--CCeEEEe-cCCeEEEEeCCEEEECCCcc
Confidence 699999999999987 3456554 567 578999999998653
No 314
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=95.19 E-value=0.018 Score=53.86 Aligned_cols=35 Identities=40% Similarity=0.418 Sum_probs=32.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
..+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 144 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 178 (310)
T 1fl2_A 144 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE 178 (310)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcc
Confidence 46899999999999999999999999999998654
No 315
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=95.18 E-value=0.021 Score=54.81 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
++.+|+|||+|..|+.+|..|...|.+|+++|.+.
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~ 223 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRP 223 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSST
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 46799999999999999999999999999999854
No 316
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}
Probab=95.17 E-value=0.022 Score=53.63 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~~ 61 (520)
++++|+|||||..|.+.|..|++.|+ +|+++|.+.
T Consensus 13 ~~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~ 48 (328)
T 2hjr_A 13 MRKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE 48 (328)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence 44699999999999999999999999 999999864
No 317
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=95.16 E-value=0.02 Score=52.96 Aligned_cols=33 Identities=21% Similarity=0.155 Sum_probs=30.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
++|+|||+|..|.+.|..|+++|++|++++++.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~ 33 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVP 33 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCc
Confidence 479999999999999999999999999999865
No 318
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=95.16 E-value=0.018 Score=57.27 Aligned_cols=36 Identities=11% Similarity=0.166 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
...+|+|||||.+|+-+|..|++.|.+|+|+++.+.
T Consensus 196 ~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~ 231 (464)
T 2xve_A 196 KDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA 231 (464)
T ss_dssp TTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCC
Confidence 357999999999999999999999999999998654
No 319
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Probab=95.14 E-value=0.021 Score=53.89 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=31.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~~ 61 (520)
+++|+|||||-.|.+.|..|++.|+ +|+++|.+.
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~ 43 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK 43 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence 4799999999999999999999998 999999864
No 320
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=95.13 E-value=0.02 Score=53.64 Aligned_cols=34 Identities=24% Similarity=0.489 Sum_probs=31.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+|+|||+|.-|.+.|..|+++|++|+++|++.
T Consensus 6 ~~kI~vIGaG~MG~~iA~~la~~G~~V~l~d~~~ 39 (319)
T 2dpo_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP 39 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CceEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999854
No 321
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*
Probab=95.08 E-value=0.021 Score=53.72 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~--~V~vlE~~~ 61 (520)
+.++|+|||+|..|.+.|..|+++|+ +|++++++.
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~ 42 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK 42 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 45799999999999999999999999 999999863
No 322
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}
Probab=95.08 E-value=0.021 Score=54.16 Aligned_cols=36 Identities=31% Similarity=0.429 Sum_probs=31.5
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
-.++++|.|||+|.-|.+.|..|+++|++|++++++
T Consensus 11 ~~~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~ 46 (335)
T 1z82_A 11 HHMEMRFFVLGAGSWGTVFAQMLHENGEEVILWARR 46 (335)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cccCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 356789999999999999999999999999999874
No 323
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=95.08 E-value=0.02 Score=53.71 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=30.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+++|+|||+|..|.+.|..|+++|++|++++++.
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~ 36 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP 36 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 3689999999999999999999999999998753
No 324
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=95.05 E-value=0.021 Score=54.02 Aligned_cols=36 Identities=31% Similarity=0.444 Sum_probs=32.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
...+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 158 ~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~ 193 (333)
T 1vdc_A 158 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDA 193 (333)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred CCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCc
Confidence 457899999999999999999999999999998654
No 325
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=95.05 E-value=0.025 Score=55.36 Aligned_cols=36 Identities=39% Similarity=0.574 Sum_probs=33.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~ 63 (520)
..+|+|||||.+|+-+|..|++.|.+|+++|+.+++
T Consensus 152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~ 187 (415)
T 3lxd_A 152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRV 187 (415)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCch
Confidence 578999999999999999999999999999998765
No 326
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=95.03 E-value=0.023 Score=49.81 Aligned_cols=34 Identities=15% Similarity=0.361 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
....|+|||||-.|...|..|.+.|.+|+|++..
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~ 63 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT 63 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence 4579999999999999999999999999999764
No 327
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=95.02 E-value=0.024 Score=55.30 Aligned_cols=36 Identities=33% Similarity=0.490 Sum_probs=33.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~ 63 (520)
..+|+|||+|.+|+-+|..|.+.|.+|+++|+.+++
T Consensus 142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~ 177 (404)
T 3fg2_P 142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRV 177 (404)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcc
Confidence 468999999999999999999999999999998765
No 328
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=95.00 E-value=0.022 Score=53.87 Aligned_cols=36 Identities=31% Similarity=0.439 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
...+|+|||+|.+|+-.|..|++.|.+|+++++.+.
T Consensus 154 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~ 189 (335)
T 2a87_A 154 RDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDE 189 (335)
T ss_dssp TTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCc
Confidence 357999999999999999999999999999998654
No 329
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=95.00 E-value=0.022 Score=53.21 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=30.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+++|+|||+|.-|.+.|..|+ +|++|+++.++.
T Consensus 2 ~mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~ 34 (307)
T 3ego_A 2 SLKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ 34 (307)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred CCEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence 478999999999999999999 999999998853
No 330
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=94.90 E-value=0.025 Score=53.62 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=30.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
.++|+|||+|.-|.+.|..|+++|++|+++++.
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~ 35 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG 35 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence 368999999999999999999999999999874
No 331
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=94.88 E-value=0.022 Score=54.13 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+..+|+|||+|..|+.+|..|...|.+|+++|++.
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~ 217 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRP 217 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 56799999999999999999999999999999853
No 332
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}
Probab=94.84 E-value=0.027 Score=51.90 Aligned_cols=34 Identities=35% Similarity=0.511 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..++|.|||+|..|...|..|+ +|++|+++|++.
T Consensus 11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~ 44 (293)
T 1zej_A 11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE 44 (293)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence 4689999999999999999999 999999999864
No 333
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=94.77 E-value=0.026 Score=55.94 Aligned_cols=37 Identities=16% Similarity=0.101 Sum_probs=33.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCc-EEEEeccCCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFK-VVLLESRDRV 63 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~-V~vlE~~~~~ 63 (520)
...+|+|||||.+|+-.|..|++.|.+ |+|+++.+.+
T Consensus 211 ~~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~ 248 (447)
T 2gv8_A 211 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD 248 (447)
T ss_dssp TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS
T ss_pred CCCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence 357899999999999999999999999 9999986543
No 334
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=94.72 E-value=0.03 Score=52.14 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+.++|.|||.|..|.+.|..|+++|++|++++++.
T Consensus 6 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 40 (303)
T 3g0o_A 6 TDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP 40 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 45799999999999999999999999999998854
No 335
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}
Probab=94.63 E-value=0.03 Score=53.14 Aligned_cols=35 Identities=31% Similarity=0.442 Sum_probs=32.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecc
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~ 60 (520)
-.+.+|+|+|||.+|..+|..|...|. +|+++|++
T Consensus 186 l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~ 221 (398)
T 2a9f_A 186 LDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF 221 (398)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred CCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence 356899999999999999999999999 99999996
No 336
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=94.61 E-value=0.032 Score=53.41 Aligned_cols=33 Identities=27% Similarity=0.230 Sum_probs=30.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
+++|+|||+|..|...|..|+++|++|++++++
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~ 36 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDID 36 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence 368999999999999999999999999999875
No 337
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=94.60 E-value=0.031 Score=52.50 Aligned_cols=35 Identities=20% Similarity=0.422 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..++|.|||.|..|...|..|+++|++|++++++.
T Consensus 30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 64 (320)
T 4dll_A 30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTP 64 (320)
T ss_dssp CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence 45799999999999999999999999999998864
No 338
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=94.59 E-value=0.037 Score=49.71 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=31.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
-..++|.|||+|..|.+.|..|+++|++|++++++.
T Consensus 17 ~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~ 52 (245)
T 3dtt_A 17 FQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP 52 (245)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 356899999999999999999999999999998853
No 339
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=94.59 E-value=0.032 Score=52.37 Aligned_cols=33 Identities=30% Similarity=0.503 Sum_probs=29.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
..++|+|||+|.-|.+.|..|+++|++|+++ +.
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~ 50 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-AR 50 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence 4579999999999999999999999999999 64
No 340
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}
Probab=94.55 E-value=0.038 Score=54.82 Aligned_cols=34 Identities=32% Similarity=0.369 Sum_probs=31.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+|+|||+|..|...|..|+++|++|+++|++.
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~ 70 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDP 70 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 4689999999999999999999999999999764
No 341
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=94.48 E-value=0.039 Score=54.17 Aligned_cols=35 Identities=26% Similarity=0.491 Sum_probs=32.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
...++|||.|.-|+..|..|+++|++|++++++..
T Consensus 8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~ 42 (446)
T 4a7p_A 8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR 42 (446)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 57899999999999999999999999999998753
No 342
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*
Probab=94.47 E-value=0.029 Score=55.26 Aligned_cols=33 Identities=18% Similarity=0.347 Sum_probs=30.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
++|+|||+|..|+..|..|+++|++|++++++.
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~ 33 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSS 33 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 479999999999999999999999999999753
No 343
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=94.46 E-value=0.035 Score=54.05 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..++|+|||+|..|+..|..|++ |++|+++|.+.
T Consensus 35 ~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~ 68 (432)
T 3pid_A 35 EFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQ 68 (432)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred CCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCH
Confidence 34799999999999999999998 99999999864
No 344
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*
Probab=94.44 E-value=0.041 Score=51.30 Aligned_cols=34 Identities=29% Similarity=0.516 Sum_probs=30.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~~ 61 (520)
+++|+|||||-.|.+.|+.|+..|+ +|.++|.+.
T Consensus 2 ~~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~ 36 (309)
T 1ur5_A 2 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE 36 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence 4689999999999999999999997 999999754
No 345
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6
Probab=94.43 E-value=0.032 Score=51.87 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
++++|+|||+|..|...|..|++.|++|.+++++.
T Consensus 4 M~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~ 38 (299)
T 1vpd_A 4 MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP 38 (299)
T ss_dssp --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred ccceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45789999999999999999999999999998753
No 346
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=94.43 E-value=0.039 Score=51.70 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCC-CcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G-~~V~vlE~~~ 61 (520)
+.++|.|||.|..|.+.|..|+++| ++|++++++.
T Consensus 23 M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~ 58 (317)
T 4ezb_A 23 MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF 58 (317)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 4578999999999999999999999 9999999864
No 347
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=94.42 E-value=0.039 Score=50.93 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=31.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
++|.|||.|..|...|..|+++|++|++++++.
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 34 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSP 34 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 589999999999999999999999999999864
No 348
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=94.39 E-value=0.043 Score=48.19 Aligned_cols=35 Identities=29% Similarity=0.388 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+.++|+|||+|..|.+.|..|++.|++|.+++++.
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~ 61 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNP 61 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34689999999999999999999999999998853
No 349
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A
Probab=94.38 E-value=0.031 Score=55.62 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=32.6
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccC
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRD 61 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~--G~~V~vlE~~~ 61 (520)
|...++|+|||+|..|+..|..|+++ |++|++++++.
T Consensus 2 M~~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~ 40 (467)
T 2q3e_A 2 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE 40 (467)
T ss_dssp CCCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 44457999999999999999999999 89999999753
No 350
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}
Probab=94.37 E-value=0.039 Score=51.32 Aligned_cols=33 Identities=33% Similarity=0.414 Sum_probs=30.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCC--cEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~--~V~vlE~~~ 61 (520)
++|+|||||..|.+.|+.|+.+|+ +|.++|.+.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~ 35 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE 35 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 479999999999999999999999 999999864
No 351
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=94.32 E-value=0.038 Score=56.98 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=30.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.
T Consensus 286 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~ 318 (598)
T 2x8g_A 286 PGKTLVIGASYVALECAGFLASLGGDVTVMVRS 318 (598)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence 458999999999999999999999999999874
No 352
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=94.29 E-value=0.052 Score=53.74 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~~ 61 (520)
....+|+|||||.+|+-+|..+.+.|. +|+|+++.+
T Consensus 262 ~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~ 298 (456)
T 2vdc_G 262 AAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRD 298 (456)
T ss_dssp CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred cCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCC
Confidence 346799999999999999999999998 599998754
No 353
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=94.26 E-value=0.041 Score=52.17 Aligned_cols=34 Identities=29% Similarity=0.437 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~ 60 (520)
.+.+|+|+|||.+|..+|..|...|. +|+|+|++
T Consensus 191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~ 225 (388)
T 1vl6_A 191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK 225 (388)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 57899999999999999999999998 89999996
No 354
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=94.16 E-value=0.042 Score=51.17 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=31.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+++|.|||+|..|...|..|+++|++|++++++.
T Consensus 3 m~~I~iiG~G~mG~~~a~~l~~~G~~V~~~d~~~ 36 (302)
T 2h78_A 3 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ 36 (302)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEEeecHHHHHHHHHHHhCCCeEEEEcCCH
Confidence 4689999999999999999999999999998853
No 355
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=94.14 E-value=0.036 Score=56.10 Aligned_cols=35 Identities=40% Similarity=0.418 Sum_probs=32.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
..+|+|||||.+|+-+|..|++.|.+|+++++.+.
T Consensus 355 ~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~ 389 (521)
T 1hyu_A 355 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE 389 (521)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcc
Confidence 57999999999999999999999999999998654
No 356
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=94.08 E-value=0.051 Score=51.77 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..++|.|||.|..|...|..|+++|++|++++++.
T Consensus 21 ~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~ 55 (358)
T 4e21_A 21 QSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV 55 (358)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 35799999999999999999999999999999864
No 357
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}
Probab=94.04 E-value=0.05 Score=54.06 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=31.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+|+|||+|..|.+.|..|+++|++|+++|++.
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~ 38 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA 38 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 3589999999999999999999999999999764
No 358
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Probab=94.04 E-value=0.045 Score=50.89 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=31.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+++|.|||+|..|...|..|++.|++|++++++.
T Consensus 2 ~~~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~ 37 (301)
T 3cky_A 2 EKSIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME 37 (301)
T ss_dssp --CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 345789999999999999999999999999998753
No 359
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=94.01 E-value=0.037 Score=51.11 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=30.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
++|.|||.|..|...|..|+++|++|++++++.
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~ 34 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNP 34 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSG
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 479999999999999999999999999999865
No 360
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Probab=94.01 E-value=0.056 Score=50.45 Aligned_cols=33 Identities=33% Similarity=0.484 Sum_probs=30.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDA--SFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~--G~~V~vlE~~~ 61 (520)
++|+|||+|..|.+.|..|++. |++|+++|.+.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~ 35 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE 35 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 4799999999999999999996 78999999864
No 361
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Probab=94.01 E-value=0.041 Score=52.09 Aligned_cols=31 Identities=29% Similarity=0.354 Sum_probs=29.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEec
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLES 59 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~ 59 (520)
++|+|||+|..|.+.|..|+++|++|+++++
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r 31 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGT 31 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence 3799999999999999999999999999988
No 362
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=94.01 E-value=0.062 Score=50.06 Aligned_cols=35 Identities=26% Similarity=0.287 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+.++|.|||.|..|...|..|+++|++|++++++.
T Consensus 8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~ 42 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP 42 (306)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 45789999999999999999999999999998854
No 363
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=93.97 E-value=0.042 Score=50.89 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=29.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
.|..+|.+||-|..|...|..|.++|++|++++++.
T Consensus 3 ~Ms~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~ 38 (297)
T 4gbj_A 3 AMSEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTA 38 (297)
T ss_dssp -CCCEEEEECCSTTHHHHHHHHHHTTCEEEEC----
T ss_pred CCCCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 455689999999999999999999999999999865
No 364
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=93.93 E-value=0.027 Score=45.91 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=31.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+|+|||+|..|...|..|.+.|++|+|++++.
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~ 54 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI 54 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 5789999999999999999999999999998853
No 365
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*
Probab=93.91 E-value=0.042 Score=53.41 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=29.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
++|+|||+|..|+..|..|++ |++|++++++.
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~ 32 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP 32 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence 479999999999999999999 99999999853
No 366
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1
Probab=93.89 E-value=0.057 Score=50.52 Aligned_cols=35 Identities=29% Similarity=0.427 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~--~V~vlE~~~ 61 (520)
++++|+|||+|-.|.+.|+.|+..|+ +|.++|.+.
T Consensus 6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~ 42 (318)
T 1y6j_A 6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 42 (318)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 35799999999999999999999998 899999753
No 367
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=93.87 E-value=0.022 Score=50.27 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
+.++|.|||+|..|-+.|..|+++|++|+++++.
T Consensus 5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~ 38 (232)
T 3dfu_A 5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP 38 (232)
T ss_dssp CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence 4579999999999999999999999999999874
No 368
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*
Probab=93.86 E-value=0.059 Score=52.22 Aligned_cols=35 Identities=37% Similarity=0.499 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+..+|+|||+|..|+.+|..|...|.+|+++|.+.
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~ 205 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP 205 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 45799999999999999999999999999998753
No 369
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}
Probab=93.82 E-value=0.036 Score=52.00 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=29.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhC-----C-CcEEEEec
Q 010001 28 SPSVIVIGAGMAGVAAARALHDA-----S-FKVVLLES 59 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~-----G-~~V~vlE~ 59 (520)
+++|+|||+|..|.+.|..|+++ | ++|+++++
T Consensus 8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r 45 (317)
T 2qyt_A 8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR 45 (317)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence 36899999999999999999999 9 99999987
No 370
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}
Probab=93.74 E-value=0.076 Score=49.45 Aligned_cols=33 Identities=36% Similarity=0.516 Sum_probs=31.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~ 60 (520)
..+|+|||+|..|.+.|+.|+++|+ +|+++|.+
T Consensus 8 ~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~ 41 (315)
T 3tl2_A 8 RKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP 41 (315)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 4689999999999999999999999 99999986
No 371
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=93.72 E-value=0.039 Score=48.68 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=30.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEE-Eecc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVL-LESR 60 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~v-lE~~ 60 (520)
+++|.|||+|..|.+.|..|+++|++|++ ++++
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~ 56 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRG 56 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence 47999999999999999999999999998 7764
No 372
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=93.72 E-value=0.058 Score=49.59 Aligned_cols=36 Identities=17% Similarity=0.318 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
.++++|+|+|||..|...+..|.++|++|+++.++.
T Consensus 3 ~m~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~ 38 (286)
T 3ius_A 3 AMTGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP 38 (286)
T ss_dssp --CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred CCcCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence 356899999999999999999999999999998754
No 373
>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*
Probab=93.67 E-value=0.035 Score=53.29 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=29.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 30 SVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
+|+|||+|..|.+.|..|+++|++|++++++
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~ 47 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMN 47 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTEEEEEEECSC
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 8999999999999999999999999999875
No 374
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=93.65 E-value=0.032 Score=55.21 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=31.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
.|+|+|+|+|-.|.+.|..|.+.|++|+|+|++.
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~ 36 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDG 36 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 4689999999999999999999999999999864
No 375
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=93.64 E-value=0.053 Score=50.68 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~ 60 (520)
..++|.|||.|..|.+.|..|+++|+ +|++++++
T Consensus 23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~ 57 (312)
T 3qsg_A 23 NAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA 57 (312)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 35799999999999999999999999 99999985
No 376
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=93.63 E-value=0.077 Score=49.23 Aligned_cols=35 Identities=23% Similarity=0.470 Sum_probs=31.7
Q ss_pred CCCeEEEEc-CCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIG-AGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIG-aGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+..+|.||| +|..|.+.|..|++.|++|++++++.
T Consensus 20 ~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~ 55 (298)
T 2pv7_A 20 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 55 (298)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence 345899999 99999999999999999999998754
No 377
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Probab=93.60 E-value=0.067 Score=50.06 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF--KVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~--~V~vlE~~ 60 (520)
...+|+|||+|..|.+.|+.|+..|+ +|+++|.+
T Consensus 4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~ 39 (326)
T 3pqe_A 4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVN 39 (326)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence 45799999999999999999999997 89999974
No 378
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Probab=93.60 E-value=0.065 Score=51.06 Aligned_cols=40 Identities=33% Similarity=0.660 Sum_probs=35.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHhCCC---cEEEEeccC-CCCce
Q 010001 27 RSPSVIVIGA-GMAGVAAARALHDASF---KVVLLESRD-RVGGR 66 (520)
Q Consensus 27 ~~~dv~IIGa-GisGLsaA~~L~~~G~---~V~vlE~~~-~~GG~ 66 (520)
++.+|+|||| |.+|+.||..+...|. +|+++|.+. .-||+
T Consensus 213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~g~~ 257 (394)
T 2qrj_A 213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGP 257 (394)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTTCSC
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccccCCc
Confidence 5789999999 9999999999999998 999999976 45665
No 379
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Probab=93.59 E-value=0.071 Score=46.55 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=29.6
Q ss_pred CeEEEEc-CCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 29 PSVIVIG-AGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 29 ~dv~IIG-aGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
++|+||| +|..|...|..|+++|++|++++++
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~ 33 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRR 33 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3799999 9999999999999999999999874
No 380
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Probab=93.58 E-value=0.075 Score=51.28 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+..+|+|||+|..|+.+|..+...|.+|+++|++.
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~ 205 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA 205 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46799999999999999999999999999999854
No 381
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Probab=93.57 E-value=0.081 Score=49.45 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=31.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~~ 61 (520)
..+|+|||||..|.+.|+.|+..|+ +|.++|...
T Consensus 7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~ 41 (324)
T 3gvi_A 7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE 41 (324)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 4699999999999999999999999 999999864
No 382
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=93.53 E-value=0.08 Score=52.96 Aligned_cols=37 Identities=30% Similarity=0.522 Sum_probs=33.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~~ 63 (520)
...+++|||||.+|+-.|..|++.|.+|+++|+.+++
T Consensus 190 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 226 (484)
T 3o0h_A 190 LPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLI 226 (484)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred cCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence 3579999999999999999999999999999997754
No 383
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=93.53 E-value=0.07 Score=51.88 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
.+.+|+|||.|-.|...|..|.+.|++|+|+|.+.
T Consensus 3 ~~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~ 37 (413)
T 3l9w_A 3 HGMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDP 37 (413)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 34689999999999999999999999999999875
No 384
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}
Probab=93.53 E-value=0.078 Score=49.65 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=31.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
.++|.|||+|..|...|..|++.|++|++++++.
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~ 63 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA 63 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 4789999999999999999999999999998754
No 385
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}
Probab=93.48 E-value=0.056 Score=53.84 Aligned_cols=33 Identities=18% Similarity=0.400 Sum_probs=30.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhC--CCcEEEEecc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESR 60 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~--G~~V~vlE~~ 60 (520)
.++|+|||+|..|+..|..|+++ |++|++++++
T Consensus 9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~ 43 (481)
T 2o3j_A 9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMN 43 (481)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 46999999999999999999999 7999999974
No 386
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Probab=93.39 E-value=0.042 Score=53.55 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=28.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHh-CCCcEEEEe
Q 010001 29 PSVIVIGAGMAGVAAARALHD-ASFKVVLLE 58 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~-~G~~V~vlE 58 (520)
++|+|||+|..|.+.|..|++ .|++|++++
T Consensus 3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~ 33 (404)
T 3c7a_A 3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLT 33 (404)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence 589999999999999999998 499999998
No 387
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=93.37 E-value=0.092 Score=48.37 Aligned_cols=33 Identities=27% Similarity=0.550 Sum_probs=30.7
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHhCCCcEEEEecc
Q 010001 28 SPSVIVIGA-GMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 28 ~~dv~IIGa-GisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
.++|.|||+ |..|.+.|..|+++|++|++++++
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~ 44 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIA 44 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 469999999 999999999999999999999875
No 388
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=93.33 E-value=0.092 Score=50.28 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=31.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
+++|+|||||..|..+|+.+.+.|++|+++|.++.
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~ 35 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ 35 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 46899999999999999999999999999998653
No 389
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A
Probab=93.29 E-value=0.089 Score=50.26 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=31.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+|+|+|+|.+|+.+|..|+..|.+|++++++.
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~ 200 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV 200 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 3799999999999999999999999999998753
No 390
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Probab=93.28 E-value=0.11 Score=48.46 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~--~V~vlE~~~ 61 (520)
+..+|+|||+|..|.++|+.|+.+|+ +|.++|.+.
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~ 56 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVME 56 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence 56899999999999999999999997 899999753
No 391
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1
Probab=93.28 E-value=0.067 Score=50.14 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=30.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCC--cEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~--~V~vlE~~~ 61 (520)
++|+|||+|..|.+.|..|+++|+ +|+++|.+.
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~ 35 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK 35 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence 479999999999999999999999 999999853
No 392
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}
Probab=93.22 E-value=0.085 Score=55.34 Aligned_cols=34 Identities=32% Similarity=0.505 Sum_probs=31.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+|+|||+|..|...|..|+++|++|+++|++.
T Consensus 312 ~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~ 345 (725)
T 2wtb_A 312 IKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 345 (725)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred CcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence 4579999999999999999999999999999764
No 393
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Probab=93.19 E-value=0.098 Score=46.99 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=31.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCC----cEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASF----KVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~----~V~vlE~~~ 61 (520)
+++|.|||+|..|.+.|..|.++|+ +|.+++++.
T Consensus 2 ~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~ 39 (247)
T 3gt0_A 2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT 39 (247)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred CCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence 4689999999999999999999998 999998853
No 394
>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}
Probab=93.13 E-value=0.058 Score=51.97 Aligned_cols=35 Identities=11% Similarity=0.173 Sum_probs=31.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCC-------CcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDAS-------FKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G-------~~V~vlE~~~~ 62 (520)
+++|+|||+|.-|.+.|..|+++| ++|++++++..
T Consensus 21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~ 62 (375)
T 1yj8_A 21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF 62 (375)
T ss_dssp CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence 358999999999999999999999 99999988654
No 395
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Probab=93.11 E-value=0.076 Score=49.54 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=30.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCC--CcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDAS--FKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G--~~V~vlE~~~ 61 (520)
++|+|||+|-.|.+.|..|+++| ++|+++|++.
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~ 36 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE 36 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence 58999999999999999999999 7999999853
No 396
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5
Probab=93.11 E-value=0.1 Score=47.62 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=30.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
...++|+|+|-.|.++|..|++.|.+|+|+.++
T Consensus 119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~ 151 (271)
T 1nyt_A 119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRT 151 (271)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECC
Confidence 468999999999999999999999999999875
No 397
>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}
Probab=93.08 E-value=0.086 Score=47.80 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=31.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCC----CcEEEEeccCC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDAS----FKVVLLESRDR 62 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G----~~V~vlE~~~~ 62 (520)
+++|.|||+|.-|.+.|..|+++| ++|.+++++..
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~ 42 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK 42 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence 368999999999999999999999 79999998654
No 398
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...
Probab=93.03 E-value=0.11 Score=48.62 Aligned_cols=36 Identities=22% Similarity=0.403 Sum_probs=31.9
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEecc
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASF--KVVLLESR 60 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~--~V~vlE~~ 60 (520)
..+..+|+|||+|..|.++|+.|+.+|. ++.++|.+
T Consensus 16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~ 53 (331)
T 4aj2_A 16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVI 53 (331)
T ss_dssp -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence 3467899999999999999999999997 89999975
No 399
>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*
Probab=93.01 E-value=0.092 Score=49.06 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=31.7
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEecc
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASF--KVVLLESR 60 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~--~V~vlE~~ 60 (520)
++...+|+|||+|..|.++|+.|+..|. ++.++|.+
T Consensus 6 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~ 43 (326)
T 3vku_A 6 DKDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF 43 (326)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence 3466899999999999999999999987 89999974
No 400
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}
Probab=93.00 E-value=0.1 Score=49.96 Aligned_cols=34 Identities=26% Similarity=0.491 Sum_probs=31.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
...|+|+|+|..|+.+|..|+..|.+|++++++.
T Consensus 166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~ 199 (369)
T 2eez_A 166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH 199 (369)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4799999999999999999999999999999753
No 401
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Probab=92.98 E-value=0.085 Score=48.87 Aligned_cols=35 Identities=26% Similarity=0.508 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~--~V~vlE~~~ 61 (520)
+..+|+|||||..|.+.|+.|+.+|+ +|.++|.+.
T Consensus 13 ~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~ 49 (303)
T 2i6t_A 13 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE 49 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 34799999999999999999999998 999999865
No 402
>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*
Probab=92.98 E-value=0.082 Score=47.98 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=29.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCC-CcEEEEecc
Q 010001 29 PSVIVIGAGMAGVAAARALHDAS-FKVVLLESR 60 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G-~~V~vlE~~ 60 (520)
++|.|||+|..|.+.|..|+++| ++|.+++++
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~ 33 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRG 33 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSS
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEECCC
Confidence 47999999999999999999999 999999875
No 403
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A
Probab=92.98 E-value=0.092 Score=51.99 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
.+++|.|||.|..|.+.|..|+++|++|++++++.
T Consensus 3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (484)
T 4gwg_A 3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV 37 (484)
T ss_dssp CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34689999999999999999999999999999865
No 404
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Probab=92.95 E-value=0.083 Score=48.67 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=30.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCC--cEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~--~V~vlE~~~ 61 (520)
++|+|||+|..|.+.|+.|++.|+ +|.++|...
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~ 35 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE 35 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence 479999999999999999999998 899999854
No 405
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Probab=92.95 E-value=0.099 Score=47.92 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=29.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
++|.|||+|..|.+.|..|.+.|++|++++++
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~ 32 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ 32 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 47999999999999999999999999999875
No 406
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=92.91 E-value=0.11 Score=48.58 Aligned_cols=34 Identities=24% Similarity=0.474 Sum_probs=31.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~--~V~vlE~~~ 61 (520)
.++|.|||.|..|.+.|..|+++|+ +|++++++.
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~ 68 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 68 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence 3789999999999999999999999 999998854
No 407
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=92.89 E-value=0.089 Score=46.40 Aligned_cols=36 Identities=22% Similarity=0.421 Sum_probs=31.7
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 26 ARSPSVIVIGA-GMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 26 ~~~~dv~IIGa-GisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
.++++|+|+|| |..|...+..|.++|++|.++.++.
T Consensus 2 ~~m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 38 (227)
T 3dhn_A 2 EKVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHP 38 (227)
T ss_dssp -CCCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCc
Confidence 34578999996 9999999999999999999998864
No 408
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Probab=92.86 E-value=0.087 Score=49.23 Aligned_cols=36 Identities=19% Similarity=0.392 Sum_probs=32.1
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEecc
Q 010001 25 QARSPSVIVIGAGMAGVAAARALHDASF--KVVLLESR 60 (520)
Q Consensus 25 ~~~~~dv~IIGaGisGLsaA~~L~~~G~--~V~vlE~~ 60 (520)
|+++++|+|||||-.|.+.|+.|+..+. ++.++|..
T Consensus 2 ~~~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~ 39 (318)
T 1ez4_A 2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV 39 (318)
T ss_dssp BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence 4567899999999999999999999887 89999874
No 409
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=92.86 E-value=0.091 Score=51.94 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=31.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
...|+|||||-+|...|..|.+.|.+|+|++..
T Consensus 12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~ 44 (457)
T 1pjq_A 12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALT 44 (457)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence 578999999999999999999999999999974
No 410
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}
Probab=92.83 E-value=0.11 Score=51.94 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=32.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
.+..+|.|||.|..|.+.|..|+++|++|++++++.
T Consensus 8 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~ 43 (497)
T 2p4q_A 8 HMSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ 43 (497)
T ss_dssp -CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred cCCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 356799999999999999999999999999999864
No 411
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=92.82 E-value=0.12 Score=48.20 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=31.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~~ 61 (520)
.++|+|||+|..|.+.|+.|+..|+ +|.++|...
T Consensus 5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~ 39 (321)
T 3p7m_A 5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ 39 (321)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence 4689999999999999999999988 999999865
No 412
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=92.76 E-value=0.1 Score=51.80 Aligned_cols=35 Identities=20% Similarity=0.405 Sum_probs=30.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHH--------------------hCCC-cEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALH--------------------DASF-KVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~--------------------~~G~-~V~vlE~~~ 61 (520)
...+|+|||+|.+|+-+|..|+ +.|. +|+|+++..
T Consensus 144 ~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~ 199 (460)
T 1cjc_A 144 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG 199 (460)
T ss_dssp TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCC
Confidence 3579999999999999999999 5687 799999854
No 413
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Probab=92.74 E-value=0.1 Score=48.92 Aligned_cols=35 Identities=31% Similarity=0.319 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCC----CcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDAS----FKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G----~~V~vlE~~~ 61 (520)
..++|.|||+|..|.+.|..|.++| ++|++++++.
T Consensus 21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~ 59 (322)
T 2izz_A 21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM 59 (322)
T ss_dssp -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence 3468999999999999999999999 8999998753
No 414
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*
Probab=92.74 E-value=0.13 Score=46.43 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=31.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..+++|||+|-+|-++|+.|++.|.+|+|+.|+.
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~ 151 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSS 151 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5799999999999999999999999999998764
No 415
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=92.69 E-value=0.12 Score=45.80 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=31.5
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGA-GMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGa-GisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+.+.|+|.|| |-.|...|..|.++|++|+++.++.
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~ 55 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE 55 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence 3578999998 9999999999999999999998864
No 416
>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*
Probab=92.66 E-value=0.099 Score=48.38 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=30.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
++|.|||+|..|.+.|..|++.|++|++++++.
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~ 33 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP 33 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 369999999999999999999999999998754
No 417
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}
Probab=92.61 E-value=0.1 Score=48.54 Aligned_cols=33 Identities=33% Similarity=0.547 Sum_probs=30.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCC--cEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~--~V~vlE~~~ 61 (520)
++|+|||+|..|.+.|+.|++.|. +|.++|...
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~ 35 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD 35 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence 579999999999999999999987 899999865
No 418
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=92.42 E-value=0.06 Score=47.93 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=30.6
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
....+|+|+|+|-.|...|..|.+.|+ |+++|++..
T Consensus 7 ~~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~ 42 (234)
T 2aef_A 7 AKSRHVVICGWSESTLECLRELRGSEV-FVLAEDENV 42 (234)
T ss_dssp ---CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred CCCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence 346789999999999999999999999 999998653
No 419
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=92.41 E-value=0.14 Score=49.19 Aligned_cols=35 Identities=37% Similarity=0.487 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
....|+|||+|..|+.+|..|+..|.+|++++++.
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~ 201 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINI 201 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45799999999999999999999999999999753
No 420
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=92.40 E-value=0.1 Score=50.83 Aligned_cols=34 Identities=15% Similarity=0.330 Sum_probs=31.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
.-+..|||.|.-|+..|..|+++|++|+++|.+.
T Consensus 11 ~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~ 44 (431)
T 3ojo_A 11 GSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQ 44 (431)
T ss_dssp -CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4588999999999999999999999999999864
No 421
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}
Probab=92.39 E-value=0.14 Score=48.23 Aligned_cols=35 Identities=29% Similarity=0.384 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
...+|.|||.|..|-+.|..|.++|++|.+++++.
T Consensus 7 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~ 41 (341)
T 3ktd_A 7 ISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR 41 (341)
T ss_dssp CSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34689999999999999999999999999999854
No 422
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*
Probab=92.36 E-value=0.11 Score=47.48 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=31.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
....|+|+|+|-+|.++|+.|++.|.+|+|+.++
T Consensus 118 ~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~ 151 (272)
T 1p77_A 118 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRT 151 (272)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 3468999999999999999999999999999885
No 423
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=92.34 E-value=0.14 Score=46.94 Aligned_cols=32 Identities=25% Similarity=0.526 Sum_probs=29.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCC--cEEEEecc
Q 010001 29 PSVIVIGAGMAGVAAARALHDASF--KVVLLESR 60 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~--~V~vlE~~ 60 (520)
++|.|||+|..|.+.|..|++.|+ +|++++++
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~ 35 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN 35 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 479999999999999999999998 89999875
No 424
>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*
Probab=92.33 E-value=0.069 Score=50.94 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=31.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCC-------CcEEEEeccCC
Q 010001 29 PSVIVIGAGMAGVAAARALHDAS-------FKVVLLESRDR 62 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G-------~~V~vlE~~~~ 62 (520)
++|+|||+|.-|.+.|..|+++| ++|++++++..
T Consensus 9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~ 49 (354)
T 1x0v_A 9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED 49 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence 58999999999999999999999 99999998654
No 425
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=92.27 E-value=0.12 Score=54.45 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=32.0
Q ss_pred CCCeEEEEc--CCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIG--AGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIG--aGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
...+|+||| ||.+|+-+|..|++.|.+|+|+++.+
T Consensus 527 ~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~ 563 (729)
T 1o94_A 527 IGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH 563 (729)
T ss_dssp CCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence 356999999 99999999999999999999999855
No 426
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Probab=92.27 E-value=0.13 Score=46.62 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=30.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
+++|.|||+|..|...|..|.+.|++|.+++++
T Consensus 3 ~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~ 35 (259)
T 2ahr_A 3 AMKIGIIGVGKMASAIIKGLKQTPHELIISGSS 35 (259)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSS
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEECCC
Confidence 368999999999999999999999999999875
No 427
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}
Probab=92.27 E-value=0.14 Score=47.27 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~ 60 (520)
....|+|||+|-+|.++|+.|++.|. +|+|+.++
T Consensus 140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~ 174 (297)
T 2egg_A 140 DGKRILVIGAGGGARGIYFSLLSTAAERIDMANRT 174 (297)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSS
T ss_pred CCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 34689999999999999999999998 99999875
No 428
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=92.24 E-value=0.12 Score=46.42 Aligned_cols=33 Identities=30% Similarity=0.496 Sum_probs=30.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~ 60 (520)
..+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d 64 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD 64 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 4689999999999999999999998 89999984
No 429
>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*
Probab=92.24 E-value=0.12 Score=51.44 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=30.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
++|.|||+|..|...|..|+++|++|++++++.
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~ 35 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV 35 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 579999999999999999999999999999853
No 430
>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}
Probab=92.23 E-value=0.092 Score=48.55 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=29.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+++|.|||+|..|...|..|++.|++|++++ +.
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~ 35 (295)
T 1yb4_A 3 AMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IG 35 (295)
T ss_dssp -CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SS
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CH
Confidence 3689999999999999999999999999998 53
No 431
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*
Probab=92.23 E-value=0.12 Score=54.22 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=31.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
-.+|.|||+|..|...|..|+++|++|+++|.+.
T Consensus 314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~ 347 (715)
T 1wdk_A 314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINE 347 (715)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence 4579999999999999999999999999999864
No 432
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Probab=92.22 E-value=0.11 Score=51.54 Aligned_cols=34 Identities=15% Similarity=0.311 Sum_probs=31.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+++|.|||+|.-|.+.|..|+++|++|++++++.
T Consensus 15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~ 48 (480)
T 2zyd_A 15 KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSR 48 (480)
T ss_dssp CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred CCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4689999999999999999999999999998863
No 433
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=92.21 E-value=0.096 Score=52.40 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCHHHHH-HHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVA-AARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLs-aA~~L~~~G~~V~vlE~~~ 61 (520)
...+|.|||.|-+|++ +|..|.++|++|++.|...
T Consensus 21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~ 56 (494)
T 4hv4_A 21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP 56 (494)
T ss_dssp -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC
T ss_pred cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCC
Confidence 3478999999999997 6999999999999999754
No 434
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=92.11 E-value=0.12 Score=48.91 Aligned_cols=33 Identities=15% Similarity=0.307 Sum_probs=30.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
...+|+|||+|.+|+-+|..|++.| +|+++++.
T Consensus 162 ~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~ 194 (357)
T 4a9w_A 162 AGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQH 194 (357)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSS
T ss_pred CCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECC
Confidence 4579999999999999999999998 69999875
No 435
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*
Probab=92.10 E-value=0.12 Score=47.71 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=29.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
++|.|||+|..|...|..|++ |++|++++++.
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~ 33 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF 33 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 479999999999999999999 99999998753
No 436
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Probab=92.08 E-value=0.14 Score=47.78 Aligned_cols=35 Identities=31% Similarity=0.601 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~--~V~vlE~~~ 61 (520)
+..+|+|||+|..|-+.|+.|+.+|. +|.++|.+.
T Consensus 5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~ 41 (316)
T 1ldn_A 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE 41 (316)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence 45799999999999999999998875 799999853
No 437
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6
Probab=92.06 E-value=0.13 Score=46.67 Aligned_cols=31 Identities=26% Similarity=0.179 Sum_probs=28.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEec
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLES 59 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~ 59 (520)
++|.|||+|..|.+.|..|++.|++|+++++
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~ 31 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLE 31 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred CeEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence 3799999999999999999999999999765
No 438
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=92.03 E-value=0.17 Score=46.94 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
....|.|||+|-.|..+|..|...|.+|++++++.
T Consensus 156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~ 190 (300)
T 2rir_A 156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS 190 (300)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence 45789999999999999999999999999999853
No 439
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=91.96 E-value=0.18 Score=44.07 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=29.9
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGA-GMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGa-GisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
++|+|+|| |..|...+..|.++|++|+++.++.
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 34 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA 34 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence 47999996 9999999999999999999998853
No 440
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6
Probab=91.95 E-value=0.13 Score=51.20 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=30.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
++|.|||+|..|...|..|+++|++|++++++.
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~ 34 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY 34 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 479999999999999999999999999999853
No 441
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=91.84 E-value=0.19 Score=46.45 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
....|.|||+|-.|..+|..|...|.+|++++++.
T Consensus 154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~ 188 (293)
T 3d4o_A 154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARES 188 (293)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 45799999999999999999999999999999854
No 442
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=91.82 E-value=0.2 Score=45.93 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=31.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+++|+|+|+|..|...+..|.++|++|+++.++.
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~ 36 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSA 36 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3589999999999999999999999999998864
No 443
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=91.81 E-value=0.15 Score=47.16 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=31.0
Q ss_pred CCCCeEEEEcCC-HHHHHHHHHHHhCCCcEEEEecc
Q 010001 26 ARSPSVIVIGAG-MAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 26 ~~~~dv~IIGaG-isGLsaA~~L~~~G~~V~vlE~~ 60 (520)
-...+|+|||+| +.|..+|..|...|.+|+|++++
T Consensus 175 l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~ 210 (320)
T 1edz_A 175 LYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN 210 (320)
T ss_dssp TTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred CCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence 356899999999 67999999999999999998764
No 444
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Probab=91.75 E-value=0.2 Score=45.90 Aligned_cols=34 Identities=12% Similarity=0.254 Sum_probs=31.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCC---cEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASF---KVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~---~V~vlE~~~ 61 (520)
+++|.|||+|--|.+.|..|.++|+ +|++++++.
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~ 39 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL 39 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence 3689999999999999999999999 999998854
No 445
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=91.74 E-value=0.2 Score=46.25 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=30.2
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGA-GMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGa-GisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
|+|+|.|| |..|-..+..|.++|++|+++-+++
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~ 34 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKP 34 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 57999998 9999999999999999999997654
No 446
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}
Probab=91.67 E-value=0.13 Score=46.80 Aligned_cols=34 Identities=26% Similarity=0.482 Sum_probs=30.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCc-EEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFK-VVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~-V~vlE~~~ 61 (520)
+++|.|||+|..|...|..|++.|++ |.+++++.
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~ 44 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE 44 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence 46899999999999999999999998 89998753
No 447
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=91.66 E-value=0.19 Score=44.03 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=30.0
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGA-GMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGa-GisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
++|+|+|| |..|...|..|.++|++|+++.++.
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 34 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP 34 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence 46999998 9999999999999999999998753
No 448
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=91.47 E-value=0.24 Score=42.58 Aligned_cols=33 Identities=21% Similarity=0.433 Sum_probs=30.7
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 29 PSVIVIGA-GMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGa-GisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+.|+|+|| |..|...+..|.++|++|+++.++.
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~ 37 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS 37 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence 68999999 9999999999999999999998864
No 449
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=91.46 E-value=0.15 Score=51.83 Aligned_cols=35 Identities=17% Similarity=0.361 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..++|+|||+|.+|+-.|..|++.|.+|+|+++.+
T Consensus 185 ~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~ 219 (542)
T 1w4x_A 185 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 219 (542)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred CCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCC
Confidence 45899999999999999999999999999999854
No 450
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Probab=91.42 E-value=0.2 Score=48.15 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=31.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 27 RSPSVIVIGA-GMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGa-GisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
+++.|+|.|| |..|...+..|.++|++|+++.++..
T Consensus 27 M~k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~ 63 (381)
T 1n7h_A 27 PRKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSS 63 (381)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred hCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCc
Confidence 3368999998 99999999999999999999988643
No 451
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A
Probab=91.39 E-value=0.16 Score=46.37 Aligned_cols=34 Identities=35% Similarity=0.400 Sum_probs=31.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
.++|+|||+|-.|-+.|..|.+.|.+|+|++++.
T Consensus 129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~ 162 (275)
T 2hk9_A 129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRTK 162 (275)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred CCEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence 4689999999999999999999999999998763
No 452
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*
Probab=91.37 E-value=0.18 Score=47.14 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=29.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEecc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASF--KVVLLESR 60 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~--~V~vlE~~ 60 (520)
+++|+|||||-.|.+.|+.|+.+|. +|.++|.+
T Consensus 6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~ 40 (317)
T 3d0o_A 6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD 40 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 4799999999999999999999885 89999864
No 453
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Probab=91.28 E-value=0.21 Score=47.18 Aligned_cols=34 Identities=29% Similarity=0.337 Sum_probs=30.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
.++|+|||+|..|.+.|..|++.|++|++++++.
T Consensus 16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~ 49 (338)
T 1np3_A 16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG 49 (338)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred CCEEEEECchHHHHHHHHHHHHCcCEEEEEECCh
Confidence 3579999999999999999999999999998753
No 454
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=91.17 E-value=0.17 Score=50.36 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=31.6
Q ss_pred CCCCeEEEEcCCHHHHH-HHHHHHhCCCcEEEEeccC
Q 010001 26 ARSPSVIVIGAGMAGVA-AARALHDASFKVVLLESRD 61 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLs-aA~~L~~~G~~V~vlE~~~ 61 (520)
...++|.|||.|-+|++ +|..|.++|++|++.|...
T Consensus 16 ~~~~~i~viG~G~sG~s~~A~~l~~~G~~V~~~D~~~ 52 (475)
T 1p3d_A 16 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD 52 (475)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred ccCCEEEEEeecHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 34568999999999998 8999999999999999854
No 455
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}
Probab=91.08 E-value=0.22 Score=46.82 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=29.8
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHhCCC--cEEEEecc
Q 010001 28 SPSVIVIGA-GMAGVAAARALHDASF--KVVLLESR 60 (520)
Q Consensus 28 ~~dv~IIGa-GisGLsaA~~L~~~G~--~V~vlE~~ 60 (520)
..+|+|||+ |..|.++|+.|+..|. +|.++|..
T Consensus 8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~ 43 (343)
T 3fi9_A 8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF 43 (343)
T ss_dssp SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC
T ss_pred CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 468999998 9999999999999985 89999974
No 456
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=91.02 E-value=0.31 Score=42.62 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=30.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHH-hCCCcEEEEeccC
Q 010001 27 RSPSVIVIGA-GMAGVAAARALH-DASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGa-GisGLsaA~~L~-~~G~~V~vlE~~~ 61 (520)
++..|+|+|| |-.|...|..|+ ++|++|+++.++.
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~ 40 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQL 40 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCc
Confidence 3345999995 999999999999 8999999998864
No 457
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=90.99 E-value=0.2 Score=49.53 Aligned_cols=35 Identities=29% Similarity=0.474 Sum_probs=30.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhC--------------------CC-cEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDA--------------------SF-KVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~--------------------G~-~V~vlE~~~ 61 (520)
...+|+|||+|.+|+-+|..|++. |. +|+|+++..
T Consensus 146 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~ 201 (456)
T 1lqt_A 146 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG 201 (456)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCC
Confidence 357899999999999999999984 54 899998854
No 458
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*
Probab=90.95 E-value=0.29 Score=51.23 Aligned_cols=35 Identities=31% Similarity=0.350 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+-.+|+|||||..|-..|+.++.+|++|+++|.+.
T Consensus 315 ~i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~ 349 (742)
T 3zwc_A 315 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESDP 349 (742)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cccEEEEEcccHHHHHHHHHHHhCCCchhcccchH
Confidence 34799999999999999999999999999999864
No 459
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=90.92 E-value=0.19 Score=55.30 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=31.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~~ 61 (520)
..+|+|||||.+|+-+|..|.+.|. +|+|+++.+
T Consensus 332 ~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~ 366 (1025)
T 1gte_A 332 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG 366 (1025)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence 3499999999999999999999996 899999875
No 460
>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*
Probab=90.86 E-value=0.19 Score=46.08 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=29.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCC--cEEEEeccC
Q 010001 29 PSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGaGisGLsaA~~L~~~G~--~V~vlE~~~ 61 (520)
++|+|||||-.|-++|+.|..+|. ++.++|.+.
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~ 35 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE 35 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 589999999999999999998876 799999753
No 461
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*
Probab=90.86 E-value=0.17 Score=47.59 Aligned_cols=35 Identities=26% Similarity=0.269 Sum_probs=31.0
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHhCCC-------cEEEEecc
Q 010001 26 ARSPSVIVIGA-GMAGVAAARALHDASF-------KVVLLESR 60 (520)
Q Consensus 26 ~~~~dv~IIGa-GisGLsaA~~L~~~G~-------~V~vlE~~ 60 (520)
+++++|+|+|| |..|...+..|.++|+ +|.++|..
T Consensus 2 ~~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~ 44 (327)
T 1y7t_A 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIP 44 (327)
T ss_dssp CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCC
Confidence 45578999998 9999999999999996 89999875
No 462
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Probab=90.84 E-value=0.21 Score=46.60 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=30.0
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhCC--CcEEEEeccC
Q 010001 29 PSVIVIGA-GMAGVAAARALHDAS--FKVVLLESRD 61 (520)
Q Consensus 29 ~dv~IIGa-GisGLsaA~~L~~~G--~~V~vlE~~~ 61 (520)
++|+|||| |..|.+.|+.|++.| .+|.++|...
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~ 36 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH 36 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence 47999998 999999999999988 6899999865
No 463
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Probab=90.76 E-value=0.24 Score=46.41 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=31.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEecc
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASF--KVVLLESR 60 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~--~V~vlE~~ 60 (520)
+++++|+|||||-.|.+.|+.|+..+. ++.++|.+
T Consensus 7 ~~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~ 43 (326)
T 2zqz_A 7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF 43 (326)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence 456899999999999999999999886 79999874
No 464
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}
Probab=90.74 E-value=0.27 Score=44.12 Aligned_cols=32 Identities=28% Similarity=0.343 Sum_probs=30.0
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccC
Q 010001 30 SVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~~ 61 (520)
+++|||+|-+|-++|+.|.+.|. +|+|+.++.
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~ 142 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTI 142 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCH
T ss_pred eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 89999999999999999999998 899998863
No 465
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*
Probab=90.74 E-value=0.26 Score=48.41 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
....|+|+|+|-.|.++|..|+..|.+|++.|.++
T Consensus 264 ~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~ 298 (488)
T 3ond_A 264 AGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP 298 (488)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 45789999999999999999999999999998753
No 466
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=90.71 E-value=0.2 Score=45.68 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~~ 61 (520)
...+++|||+|-+|-++|+.|++.|. +|+|+.++.
T Consensus 116 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~ 151 (277)
T 3don_A 116 EDAYILILGAGGASKGIANELYKIVRPTLTVANRTM 151 (277)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 35689999999999999999999998 899998764
No 467
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}
Probab=90.04 E-value=0.048 Score=47.27 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+.++|.|||+|-.|.+.|..|.+.|++|++++++.
T Consensus 18 ~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~ 52 (201)
T 2yjz_A 18 KQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNP 52 (201)
Confidence 45689999999999999999999999999998754
No 468
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*
Probab=90.43 E-value=0.23 Score=49.32 Aligned_cols=34 Identities=15% Similarity=0.282 Sum_probs=31.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+++|.|||+|..|.+.|..|+++|++|++++++.
T Consensus 5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 38 (474)
T 2iz1_A 5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTT 38 (474)
T ss_dssp TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 3689999999999999999999999999999753
No 469
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Probab=90.41 E-value=0.23 Score=45.63 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=29.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
...++|+|+|-.|.++|..|++.| +|+|+.++
T Consensus 128 ~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~ 159 (287)
T 1nvt_A 128 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRT 159 (287)
T ss_dssp SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred CCEEEEECchHHHHHHHHHHHHCC-CEEEEECC
Confidence 468999999999999999999999 99999875
No 470
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}
Probab=90.40 E-value=0.31 Score=44.22 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=31.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~~ 61 (520)
....++|+|+|-+|-++|+.|++.|. +|+|+.++.
T Consensus 119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~ 154 (272)
T 3pwz_A 119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM 154 (272)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 46789999999999999999999996 999998753
No 471
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1
Probab=90.29 E-value=0.31 Score=46.26 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=31.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
..+.|+|+|+|-.|..+|..|.+.|.+|+|.|..
T Consensus 172 ~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~ 205 (364)
T 1leh_A 172 EGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVN 205 (364)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4578999999999999999999999999999864
No 472
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=90.28 E-value=0.33 Score=45.09 Aligned_cols=34 Identities=15% Similarity=0.205 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~ 60 (520)
....++|+|+|-+|-++|+.|++.|. +|+|+.++
T Consensus 153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~ 187 (315)
T 3tnl_A 153 IGKKMTICGAGGAATAICIQAALDGVKEISIFNRK 187 (315)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred cCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence 45789999999999999999999998 89999886
No 473
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*
Probab=90.24 E-value=0.34 Score=45.61 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
..+.|.|||.|-.|...|..|+..|++|++++++..
T Consensus 149 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~ 184 (334)
T 2dbq_A 149 YGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRK 184 (334)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcc
Confidence 457899999999999999999999999999998643
No 474
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}
Probab=90.24 E-value=0.29 Score=44.59 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~~ 61 (520)
...+++|||+|-+|-++|+.|++.|. +|+|+.|+.
T Consensus 121 ~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~ 156 (282)
T 3fbt_A 121 KNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP 156 (282)
T ss_dssp TTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 45799999999999999999999998 899998753
No 475
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*
Probab=90.23 E-value=0.33 Score=44.34 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=31.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~~ 61 (520)
....++|+|+|-+|-++|+.|++.|. +|+|+.++.
T Consensus 125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~ 160 (281)
T 3o8q_A 125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRTF 160 (281)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH
Confidence 45789999999999999999999996 999998753
No 476
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A
Probab=90.19 E-value=0.2 Score=46.95 Aligned_cols=35 Identities=20% Similarity=0.202 Sum_probs=30.4
Q ss_pred CCCeEEEEc-CCHHHHHHHHHHHhCC--CcEEEEeccC
Q 010001 27 RSPSVIVIG-AGMAGVAAARALHDAS--FKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIG-aGisGLsaA~~L~~~G--~~V~vlE~~~ 61 (520)
++++|+||| +|..|.+.|+.|+++| .+|.++|...
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~ 44 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVN 44 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSS
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 457999999 7999999999999998 7899999654
No 477
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=90.17 E-value=0.31 Score=45.55 Aligned_cols=34 Identities=26% Similarity=0.513 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~ 60 (520)
...+|+|||+|-.|..+|..|+..|. +++|+|..
T Consensus 33 ~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D 67 (340)
T 3rui_A 33 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 67 (340)
T ss_dssp HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred hCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence 35799999999999999999999998 79999874
No 478
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=90.13 E-value=0.23 Score=49.62 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCHHHHH-HHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVA-AARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLs-aA~~L~~~G~~V~vlE~~~ 61 (520)
..++|.|||.|-+|++ +|..|.++|++|++.|...
T Consensus 18 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~ 53 (491)
T 2f00_A 18 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP 53 (491)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC
T ss_pred cCCEEEEEEcCHHHHHHHHHHHHhCCCeEEEECCCC
Confidence 4468999999999998 8999999999999999854
No 479
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Probab=90.11 E-value=0.31 Score=44.08 Aligned_cols=32 Identities=38% Similarity=0.498 Sum_probs=30.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 30 dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+|+|||+|-.|-+.|..|.+.|.+|+|++++.
T Consensus 118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~ 149 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP 149 (263)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 89999999999999999999999999998863
No 480
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Probab=90.06 E-value=0.34 Score=45.70 Aligned_cols=34 Identities=15% Similarity=0.338 Sum_probs=30.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHhCCCcEEEEecc
Q 010001 27 RSPSVIVIGA-GMAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGa-GisGLsaA~~L~~~G~~V~vlE~~ 60 (520)
.++.|+|.|| |..|...+..|.++|++|+++.+.
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~ 60 (343)
T 2b69_A 26 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF 60 (343)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3578999998 999999999999999999999874
No 481
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=90.02 E-value=0.23 Score=45.52 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecc
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~ 60 (520)
...+|+|||+|-.|..+|.+|++.|. +++|+|..
T Consensus 35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D 69 (292)
T 3h8v_A 35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYD 69 (292)
T ss_dssp GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 35799999999999999999999998 79999873
No 482
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=90.02 E-value=0.35 Score=44.20 Aligned_cols=35 Identities=31% Similarity=0.367 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~~ 61 (520)
....++|+|+|-+|-++|+.|++.|. +|+|+.++.
T Consensus 126 ~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~ 161 (283)
T 3jyo_A 126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence 45789999999999999999999998 699998753
No 483
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=90.00 E-value=0.29 Score=46.24 Aligned_cols=37 Identities=27% Similarity=0.304 Sum_probs=30.8
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 26 ARSPSVIVIGA-GMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 26 ~~~~dv~IIGa-GisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
.+.+.|+|.|| |..|...+..|.++|++|+++.+...
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~ 54 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPS 54 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence 45688999999 99999999999999999999988654
No 484
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=89.96 E-value=0.35 Score=44.08 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=30.8
Q ss_pred CCCeEEEEcCC-HHHHHHHHHHHhCCCcEEEEecc
Q 010001 27 RSPSVIVIGAG-MAGVAAARALHDASFKVVLLESR 60 (520)
Q Consensus 27 ~~~dv~IIGaG-isGLsaA~~L~~~G~~V~vlE~~ 60 (520)
...+|+|||+| +.|..+|..|...|..|+|+.+.
T Consensus 164 ~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~ 198 (301)
T 1a4i_A 164 AGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK 198 (301)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC
Confidence 56899999999 68999999999999999999653
No 485
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=89.89 E-value=0.36 Score=45.44 Aligned_cols=35 Identities=34% Similarity=0.504 Sum_probs=31.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGA-GMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGa-GisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+.++|+|.|| |..|...+..|.++|++|+++.++.
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 47 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPS 47 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCh
Confidence 3458999996 9999999999999999999998864
No 486
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=89.88 E-value=0.34 Score=45.06 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=32.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 27 RSPSVIVIGA-GMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 27 ~~~dv~IIGa-GisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
+++.|+|.|| |..|...+..|.++|++|+++.+...
T Consensus 6 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 42 (321)
T 3vps_A 6 LKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV 42 (321)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence 4578999999 99999999999999999999988654
No 487
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=89.84 E-value=0.29 Score=45.01 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=29.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhC--CCcEEEEecc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESR 60 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~--G~~V~vlE~~ 60 (520)
.++|.|||+|..|.+.|..|+++ |++|.+++++
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~ 40 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRS 40 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSS
T ss_pred cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 36899999999999999999998 5789999875
No 488
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*
Probab=89.82 E-value=0.33 Score=47.10 Aligned_cols=32 Identities=34% Similarity=0.533 Sum_probs=29.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC---cEEEEe
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF---KVVLLE 58 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~---~V~vlE 58 (520)
...+|+|+|||-+|.++|+.|.+.|. +|+|++
T Consensus 185 ~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd 219 (439)
T 2dvm_A 185 SEITLALFGAGAAGFATLRILTEAGVKPENVRVVE 219 (439)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred cCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence 35689999999999999999999997 899998
No 489
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=89.77 E-value=0.53 Score=45.15 Aligned_cols=37 Identities=24% Similarity=0.458 Sum_probs=33.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
.+.+.|.|||+|-.|...|..+.+.|++|.+++..+.
T Consensus 10 ~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~ 46 (377)
T 3orq_A 10 KFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED 46 (377)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 3567999999999999999999999999999987543
No 490
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=89.73 E-value=0.31 Score=45.03 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=31.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
+.+|.+||=|.-|...|..|.++|++|+|++++.
T Consensus 3 M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~ 36 (300)
T 3obb_A 3 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ 36 (300)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred cCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCH
Confidence 4589999999999999999999999999999864
No 491
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=89.72 E-value=0.32 Score=43.62 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=30.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecc
Q 010001 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (520)
Q Consensus 28 ~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~ 60 (520)
..+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d 61 (251)
T 1zud_1 28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD 61 (251)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 5799999999999999999999998 79999874
No 492
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A
Probab=89.72 E-value=0.35 Score=45.39 Aligned_cols=35 Identities=31% Similarity=0.403 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
..++|.|||.|-.|...|..|+..|++|++++++.
T Consensus 154 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~ 188 (330)
T 2gcg_A 154 TQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQ 188 (330)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSS
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 45789999999999999999999999999999754
No 493
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=89.54 E-value=0.33 Score=46.76 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
....|+|||.|..|..+|..|...|.+|+++|.++
T Consensus 219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp 253 (435)
T 3gvp_A 219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP 253 (435)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 45799999999999999999999999999999753
No 494
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=89.44 E-value=0.35 Score=44.77 Aligned_cols=34 Identities=29% Similarity=0.430 Sum_probs=30.8
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGA-GMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGa-GisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
++.|+|+|| |.-|...+..|.++|++|.++.++.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 38 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES 38 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence 467999998 9999999999999999999998853
No 495
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Probab=89.44 E-value=0.41 Score=47.38 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=32.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 26 ~~~~dv~IIGaGisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
.....|+|||+|..|..+|..|...|.+|+++|.+.
T Consensus 272 l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~ 307 (494)
T 3ce6_A 272 IGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDP 307 (494)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 356799999999999999999999999999999754
No 496
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=89.33 E-value=0.39 Score=43.18 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=30.0
Q ss_pred CCCeEEEEcCC-HHHHHHHHHHHhCCCcEEEEec
Q 010001 27 RSPSVIVIGAG-MAGVAAARALHDASFKVVLLES 59 (520)
Q Consensus 27 ~~~dv~IIGaG-isGLsaA~~L~~~G~~V~vlE~ 59 (520)
...+++|||+| +.|..+|..|.+.|..|+|+.+
T Consensus 149 ~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~ 182 (276)
T 3ngx_A 149 HENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHS 182 (276)
T ss_dssp CSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECT
T ss_pred CCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeC
Confidence 46899999976 7999999999999999999976
No 497
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=89.27 E-value=0.27 Score=43.66 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=30.7
Q ss_pred CCCeEEEEc-CCHHHHHHHHHHHhCC-CcEEEEeccC
Q 010001 27 RSPSVIVIG-AGMAGVAAARALHDAS-FKVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIG-aGisGLsaA~~L~~~G-~~V~vlE~~~ 61 (520)
+++.|+|.| +|-.|...|..|+++| ++|+++.++.
T Consensus 22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~ 58 (236)
T 3qvo_A 22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQP 58 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSG
T ss_pred cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcCh
Confidence 346899999 4999999999999999 8999998864
No 498
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=89.25 E-value=0.47 Score=44.64 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=32.8
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHhCCCcEEEEeccCC
Q 010001 25 QARSPSVIVIGA-GMAGVAAARALHDASFKVVLLESRDR 62 (520)
Q Consensus 25 ~~~~~dv~IIGa-GisGLsaA~~L~~~G~~V~vlE~~~~ 62 (520)
|.+++.|+|.|| |..|...|..|+++|++|+++.+...
T Consensus 2 M~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~ 40 (341)
T 3enk_A 2 MSTKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVN 40 (341)
T ss_dssp CCSSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSS
T ss_pred CCCCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCc
Confidence 445678999996 99999999999999999999987543
No 499
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1
Probab=89.20 E-value=0.38 Score=46.67 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccC
Q 010001 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (520)
Q Consensus 27 ~~~dv~IIGaGisGLsaA~~L~~~G~-~V~vlE~~~ 61 (520)
....|+|||+|-.|..+|..|...|. +|++++++.
T Consensus 166 ~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~ 201 (404)
T 1gpj_A 166 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY 201 (404)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred cCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 45789999999999999999999998 899998764
No 500
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=89.16 E-value=0.37 Score=44.83 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=29.1
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHhCCCcEEEEeccC
Q 010001 28 SPSVIVIGA-GMAGVAAARALHDASFKVVLLESRD 61 (520)
Q Consensus 28 ~~dv~IIGa-GisGLsaA~~L~~~G~~V~vlE~~~ 61 (520)
.+.|+|.|| |..|...+..|.++|++|+++.++.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 36 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRR 36 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC---
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCC
Confidence 468999998 9999999999999999999998753
Done!