Query 010002
Match_columns 520
No_of_seqs 336 out of 1932
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 17:43:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010002.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010002hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.8 4.4E-19 1.5E-23 141.7 6.0 60 251-310 2-62 (63)
2 1gcc_A Ethylene responsive ele 99.8 8.3E-19 2.8E-23 140.1 6.3 57 159-216 2-61 (63)
3 3igm_B PF14_0633 protein; AP2 94.4 0.024 8.1E-07 47.1 3.1 29 155-183 3-31 (77)
4 1u3e_M HNH homing endonuclease 82.0 0.084 2.9E-06 48.4 -3.4 88 197-292 55-146 (174)
5 3eik_A Tata-box-binding protei 77.4 12 0.00041 36.3 9.8 134 158-298 75-212 (218)
6 1u3e_M HNH homing endonuclease 73.7 0.16 5.5E-06 46.5 -4.2 38 160-199 109-146 (174)
7 2z8u_A Tata-box-binding protei 71.9 21 0.00073 33.6 9.8 133 158-298 45-182 (188)
8 1ais_A TBP, protein (tata-bind 67.9 25 0.00087 32.9 9.3 133 158-298 41-178 (182)
9 1mp9_A Tata-binding protein; t 65.9 34 0.0012 32.5 9.9 133 158-298 45-182 (198)
10 3igm_B PF14_0633 protein; AP2 64.7 3 0.0001 34.6 2.1 20 248-267 4-24 (77)
11 1z1b_A Integrase; protein-DNA 41.2 33 0.0011 32.7 5.4 41 162-205 15-55 (356)
12 1x60_A Sporulation-specific N- 40.9 41 0.0014 26.1 5.1 22 182-203 11-32 (79)
13 1ytb_A Protein (tata binding p 31.0 1.4E+02 0.0047 27.9 7.7 133 158-297 37-173 (180)
14 1z1b_A Integrase; protein-DNA 29.6 62 0.0021 30.7 5.2 42 253-298 14-55 (356)
15 1rm1_A Tata-box binding protei 27.1 1.3E+02 0.0046 29.3 7.1 133 158-297 97-233 (240)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.76 E-value=4.4e-19 Score=141.69 Aligned_cols=60 Identities=38% Similarity=0.592 Sum_probs=55.8
Q ss_pred cccCeeeecCCceEEeecccc-CceeeeccCCCCHHHHHHHHHHHHHHhcCCCCccCCCCc
Q 010002 251 KYRGVTLHKCGRWEARMGQFL-GKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPS 310 (520)
Q Consensus 251 kYRGV~~~k~GKW~ArI~~~~-~gK~v~LGtFdTeEEAARAYDkAAikl~G~~A~tNFp~s 310 (520)
+|+||+++++|||+|+|+... +++++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 699999988999999997654 468999999999999999999999999999999999875
No 2
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.75 E-value=8.3e-19 Score=140.12 Aligned_cols=57 Identities=49% Similarity=0.835 Sum_probs=53.6
Q ss_pred CeEEeEEecCCCeEEEEEEeC---CeEEEeCCCCCHHHHHHHHHHHHHHhhcCccCccccc
Q 010002 159 QYRGVTFYRRTGRWESHIWDS---GKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSI 216 (520)
Q Consensus 159 gYRGVt~~kr~GKW~A~I~~~---GKri~LGtFdTeEEAArAYD~AAikl~G~~A~~NFp~ 216 (520)
+||||++ +.+|||+|+|+++ ++++|||+|+|+||||+|||.|+++++|..+.+|||.
T Consensus 2 ~yrGV~~-r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~ 61 (63)
T 1gcc_A 2 HYRGVRQ-RPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61 (63)
T ss_dssp CCTTEEE-ETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCT
T ss_pred CcccEee-CCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCC
Confidence 6999997 4689999999994 7899999999999999999999999999999999995
No 3
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=94.38 E-value=0.024 Score=47.08 Aligned_cols=29 Identities=28% Similarity=0.564 Sum_probs=25.5
Q ss_pred CCCCCeEEeEEecCCCeEEEEEEeCCeEE
Q 010002 155 SRSSQYRGVTFYRRTGRWESHIWDSGKQV 183 (520)
Q Consensus 155 ~~tSgYRGVt~~kr~GKW~A~I~~~GKri 183 (520)
..+|+|.||+|+++.+.|.|.-..+|++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDGASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEETTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEecCCeEe
Confidence 46799999999999999999999998754
No 4
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=81.97 E-value=0.084 Score=48.40 Aligned_cols=88 Identities=9% Similarity=-0.026 Sum_probs=53.8
Q ss_pred HHHHHHHHhhcCcc---Cccccc-cccchhhhhhccccccceeeeecccccCcCCCCccccCeeeecCCceEEeeccccC
Q 010002 197 AYDRAAIKFRGAEA---DINFSI-EDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLG 272 (520)
Q Consensus 197 AYD~AAikl~G~~A---~~NFp~-sdYeeELkqL~eLSKEE~V~aLRRqs~g~~r~sSkYRGV~~~k~GKW~ArI~~~~~ 272 (520)
++...+..|.|... ..++-- ......+..|.-+|..|......+... . ..++||.+.+.++|.+.| ...
T Consensus 55 vHrlVa~~f~~~~~~~~~v~H~dg~k~nn~~~NL~~~t~~eN~~~~~~~~~----~-~~~~g~~~~~~~k~~~vi--~~~ 127 (174)
T 1u3e_M 55 VHRLVAIHFCEGYEEGLVVDHKDGNKDNNLSTNLRWVTQKINVENQMSRGT----L-NVSKAQQIAKIKNQKPII--VIS 127 (174)
T ss_dssp HHHHHHHHHCTTCCTTCEEEETTSCTTCCCGGGEEEECHHHHHHHHHHHTC----C-CCHHHHHHHHHHTCCCEE--EEC
T ss_pred eHHHHHHHhcCCCCCCCEEEcCCCCCCCCCHHHcEECCHHHHhhcccccCc----c-cceeeeeeccCCCCceEE--EEc
Confidence 45555666666432 122221 123356677888888877655443321 1 124577652356788888 444
Q ss_pred ceeeeccCCCCHHHHHHHHH
Q 010002 273 KKYVYLGLFDTEVEAARAYD 292 (520)
Q Consensus 273 gK~v~LGtFdTeEEAARAYD 292 (520)
+..+||.|+|.+|||++|.
T Consensus 128 -~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 128 -PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp -TTSCEEEESCHHHHHHHHT
T ss_pred -CCceEEeeCCHHHHHHHHC
Confidence 6678999999999999963
No 5
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=77.38 E-value=12 Score=36.31 Aligned_cols=134 Identities=15% Similarity=0.166 Sum_probs=82.5
Q ss_pred CCeEEeEEecCCCeEEEEEEeCCeEEEeCCCCCHHHHHHHHHHHHHHhhcCccCccc---cccccchhhhhhccccccce
Q 010002 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINF---SIEDYEDDLKQMSNLTKEEF 234 (520)
Q Consensus 158 SgYRGVt~~kr~GKW~A~I~~~GKri~LGtFdTeEEAArAYD~AAikl~G~~A~~NF---p~sdYeeELkqL~eLSKEE~ 234 (520)
.+|-||.++-+.-+=.+.|+..||-+..|. .++++|..|.++.+..+........| .+..-......-..+..+++
T Consensus 75 e~Fpglv~Rl~~Pk~t~LIF~SGKiV~TGA-kS~e~a~~A~~ki~~~L~~lG~~v~~~~fkIqNIvas~dl~f~I~Le~l 153 (218)
T 3eik_A 75 KRFAAVIMRIREPKTTALIFASGKMVITGA-KSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGL 153 (218)
T ss_dssp TTCSSEEEEETTTTEEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEEEEEEEECSSCBCHHHH
T ss_pred ccCceEEEEecCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEECCCcCcHHHH
Confidence 467788877788899999999999888876 56889999998888777542222222 21110000000001111122
Q ss_pred eeeecccccCcCCCCccccCeeeec-CCceEEeeccccCceeeeccCCCCHHHHHHHHHHHHHHh
Q 010002 235 VHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (520)
Q Consensus 235 V~aLRRqs~g~~r~sSkYRGV~~~k-~GKW~ArI~~~~~gK~v~LGtFdTeEEAARAYDkAAikl 298 (520)
......... =....|-|+.++- .-|-...| +..||-+..|. .+++|+..|++.-.-.+
T Consensus 154 a~~~~~~~~---YEPE~fPGliyR~~~pkvt~lI--F~SGKiviTGa-ks~~d~~~A~~~I~p~L 212 (218)
T 3eik_A 154 AYAHSNYCS---YEPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KVRDDIYQAFNNIYPVL 212 (218)
T ss_dssp HHHSTTTEE---CCTTTSSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred HHhccCCcE---ECCccCceEEEEcCCCCEEEEE--eCCCeEEEEec-CCHHHHHHHHHHHHHHH
Confidence 111111111 1234688988764 55667777 88899888887 77999999998865444
No 6
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=73.69 E-value=0.16 Score=46.53 Aligned_cols=38 Identities=8% Similarity=0.008 Sum_probs=31.8
Q ss_pred eEEeEEecCCCeEEEEEEeCCeEEEeCCCCCHHHHHHHHH
Q 010002 160 YRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYD 199 (520)
Q Consensus 160 YRGVt~~kr~GKW~A~I~~~GKri~LGtFdTeEEAArAYD 199 (520)
++||.+ +..++|.+.|... +.++||.|.|.+|||++|.
T Consensus 109 ~~g~~~-~~~~k~~~vi~~~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQI-AKIKNQKPIIVIS-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHH-HHHHTCCCEEEEC-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeee-ccCCCCceEEEEc-CCceEEeeCCHHHHHHHHC
Confidence 467876 6667799999988 7788999999999999864
No 7
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=71.95 E-value=21 Score=33.63 Aligned_cols=133 Identities=16% Similarity=0.179 Sum_probs=75.3
Q ss_pred CCeEEeEEecCCCeEEEEEEeCCeEEEeCCCCCHHHHHHHHHHHHHHhhcCc---c-Cccccccccchhhhhhccccccc
Q 010002 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAE---A-DINFSIEDYEDDLKQMSNLTKEE 233 (520)
Q Consensus 158 SgYRGVt~~kr~GKW~A~I~~~GKri~LGtFdTeEEAArAYD~AAikl~G~~---A-~~NFp~sdYeeELkqL~eLSKEE 233 (520)
.+|-||.++-+.-+=.+.|+..||-+--|.. ++++|..|..+.+..+.... . ..+|.+..--....--..+..++
T Consensus 45 ~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGAk-S~e~a~~a~~~~~~~L~~lg~~~~~~~~~~I~NIVas~~l~~~i~L~~ 123 (188)
T 2z8u_A 45 EQFPGLVCRLSVPKVALLIFRSGKVNCTGAK-SKEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDD 123 (188)
T ss_dssp ----CEEEEETTTTEEEEECTTSEEEEEEES-SHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEEEEEEECSSCCCHHH
T ss_pred CCcccEEEEcCCCcEEEEEeCCCeEEEecCC-CHHHHHHHHHHHHHHHHhcCCCccccCceEEEEEEEEEecCCccCHHH
Confidence 4788998877888889999999998877764 56777777777665553321 1 12332111000000000111111
Q ss_pred eeeeecccccCcCCCCccccCeeeec-CCceEEeeccccCceeeeccCCCCHHHHHHHHHHHHHHh
Q 010002 234 FVHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (520)
Q Consensus 234 ~V~aLRRqs~g~~r~sSkYRGV~~~k-~GKW~ArI~~~~~gK~v~LGtFdTeEEAARAYDkAAikl 298 (520)
+...+ +... =....|-|+.++- .-|-.+-| +..||-+..|. .+++|+..|+++....+
T Consensus 124 la~~~-~~~e---YePe~fPgliyR~~~Pk~t~lI--F~SGKiviTGa-ks~~~~~~A~~~i~~~L 182 (188)
T 2z8u_A 124 IALMV-EGTE---YEPEQFPGLVYRLDDPKVVVLI--FGSGKVVITGL-KSEEDAKRALKKILDTI 182 (188)
T ss_dssp HHHHS-TTEE---ECTTTSSSEEEEEETTEEEEEE--CTTSEEEEESC-SCHHHHHHHHHHHHHHH
T ss_pred HHhhC-cCcE---ECCccCceEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 11111 1111 1234788988763 55677777 88899888886 46778888888865544
No 8
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=67.93 E-value=25 Score=32.88 Aligned_cols=133 Identities=16% Similarity=0.172 Sum_probs=78.6
Q ss_pred CCeEEeEEecCCCeEEEEEEeCCeEEEeCCCCCHHHHHHHHHHHHHHhhcC--c-c-Cccccccccchhhhhhccccccc
Q 010002 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGA--E-A-DINFSIEDYEDDLKQMSNLTKEE 233 (520)
Q Consensus 158 SgYRGVt~~kr~GKW~A~I~~~GKri~LGtFdTeEEAArAYD~AAikl~G~--~-A-~~NFp~sdYeeELkqL~eLSKEE 233 (520)
.+|-||.++-+.-+=.+.|+..||-+--|. .++++|..|..+.+..+... . . ..+|.+..--....--..+..++
T Consensus 41 ~~fpgli~Rl~~P~~t~lIF~SGKiv~TGa-kS~~~~~~a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~ 119 (182)
T 1ais_A 41 EEFPGIICHLDDPKVALLIFSSGKLVVTGA-KSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDV 119 (182)
T ss_dssp TTCSSEEEECSSSCCEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCSSSCEEEEEEEEEEEECSSCCCHHH
T ss_pred CccccEEEEcCCCcEEEEEeCCCeEEEecC-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEEEcCCccCHHH
Confidence 467788876677788899999998776664 67788888888876665432 1 1 12332211000000000111111
Q ss_pred eeeeecccccCcCCCCccccCeeeec-CCceEEeeccccCceeeeccCCCCHHHHHHHHHHHHHHh
Q 010002 234 FVHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (520)
Q Consensus 234 ~V~aLRRqs~g~~r~sSkYRGV~~~k-~GKW~ArI~~~~~gK~v~LGtFdTeEEAARAYDkAAikl 298 (520)
+...+ +.. .=...+|-|+.++- .-|-.+-| +..||-+..|. .+++|+..|+++-...+
T Consensus 120 la~~~-~~~---~YePe~fpgli~R~~~pk~~~lI--F~SGKiviTGa-ks~~~~~~a~~~i~~~L 178 (182)
T 1ais_A 120 VALTL-PNC---EYEPEQFPGVIYRVKEPKSVILL--FSSGKIVCSGA-KSEADAWEAVRKLLREL 178 (182)
T ss_dssp HHHHS-TTE---ECCTTTCSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred HHhhC-CCC---EECCccCceEEEEeCCCcEEEEE--ecCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 11111 111 11234788988764 55677777 78899888886 56788999988866555
No 9
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=65.88 E-value=34 Score=32.51 Aligned_cols=133 Identities=18% Similarity=0.205 Sum_probs=78.9
Q ss_pred CCeEEeEEecCCCeEEEEEEeCCeEEEeCCCCCHHHHHHHHHHHHHHhhcCcc----Cccccccccchhhhhhccccccc
Q 010002 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEA----DINFSIEDYEDDLKQMSNLTKEE 233 (520)
Q Consensus 158 SgYRGVt~~kr~GKW~A~I~~~GKri~LGtFdTeEEAArAYD~AAikl~G~~A----~~NFp~sdYeeELkqL~eLSKEE 233 (520)
.+|-||.++-+.-+=.+.|+..||-+--|.. ++++|..|.++.+..+....- ..+|.+..--....--..+..++
T Consensus 45 ~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGak-S~e~a~~a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~ 123 (198)
T 1mp9_A 45 DQFPGLIFRLESPKITSLIFKSGKMVVTGAK-STDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDK 123 (198)
T ss_dssp TTCSSEEEEETTTTEEEEECTTSEEEEECCS-SHHHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEEEECSSEECHHH
T ss_pred ccccceEEEcCCCceEEEEeCCCeEEEeccC-CHHHHHHHHHHHHHHHHHcCCcccCcCceEEEEEEEEeeCCCccCHHH
Confidence 4678888777788889999999998888874 557788887776665543111 12222111000000000011111
Q ss_pred eeeeecccccCcCCCCccccCeeeec-CCceEEeeccccCceeeeccCCCCHHHHHHHHHHHHHHh
Q 010002 234 FVHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (520)
Q Consensus 234 ~V~aLRRqs~g~~r~sSkYRGV~~~k-~GKW~ArI~~~~~gK~v~LGtFdTeEEAARAYDkAAikl 298 (520)
+...+ +.. .=....|-|+.++- .-|-.+-| +..||-+..|. .+++++..|+++-...+
T Consensus 124 la~~~-~~~---~YePe~fPgliyR~~~Pk~t~lI--F~SGKiviTGa-ks~~~~~~A~~~i~~~L 182 (198)
T 1mp9_A 124 AAFLL-ENN---MYEPEQFPGLIYRMDEPRVVLLI--FSSGKMVITGA-KREDEVHKAVKKIFDKL 182 (198)
T ss_dssp HHHHS-SSE---ECCTTTCSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred HHhhc-CCc---EECCccCCeEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 11111 111 11234788988774 55777777 88899888886 46778888988866555
No 10
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=64.75 E-value=3 Score=34.63 Aligned_cols=20 Identities=40% Similarity=0.511 Sum_probs=17.6
Q ss_pred CCccccCeeeec-CCceEEee
Q 010002 248 GSSKYRGVTLHK-CGRWEARM 267 (520)
Q Consensus 248 ~sSkYRGV~~~k-~GKW~ArI 267 (520)
.+|+|.||+|.+ .+.|.|.-
T Consensus 4 ~~Sg~pGVsw~kR~~~WlA~W 24 (77)
T 3igm_B 4 MSSGYPGVSWNKRMCAWLAFF 24 (77)
T ss_dssp CCSSSTTEEEETTTTEEEEEE
T ss_pred CCCCCCcEEeecCCceEEEEE
Confidence 468999999998 68899987
No 11
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=41.22 E-value=33 Score=32.70 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=30.7
Q ss_pred EeEEecCCCeEEEEEEeCCeEEEeCCCCCHHHHHHHHHHHHHHh
Q 010002 162 GVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKF 205 (520)
Q Consensus 162 GVt~~kr~GKW~A~I~~~GKri~LGtFdTeEEAArAYD~AAikl 205 (520)
||+ .+..|.|.......||++.+|. |..||..+...+...+
T Consensus 15 ~v~-~~~~g~~~~r~~~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLY-IRNNGYYCYRDPRTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEE-EETTTEEEEECTTTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cce-ecCCCeEEEEeecCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 465 4677899988777899999996 8888877766655544
No 12
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=40.92 E-value=41 Score=26.14 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=17.5
Q ss_pred EEEeCCCCCHHHHHHHHHHHHH
Q 010002 182 QVYLGGFDTAHAAARAYDRAAI 203 (520)
Q Consensus 182 ri~LGtFdTeEEAArAYD~AAi 203 (520)
.|.+|.|.+.+.|.+...+...
T Consensus 11 ~vQvGaf~~~~~A~~~~~~L~~ 32 (79)
T 1x60_A 11 KVQIGAFKVKANADSLASNAEA 32 (79)
T ss_dssp EEEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEEEcCCHHHHHHHHHHHHh
Confidence 5788999999999888766543
No 13
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=31.01 E-value=1.4e+02 Score=27.90 Aligned_cols=133 Identities=17% Similarity=0.157 Sum_probs=74.9
Q ss_pred CCeEEeEEecCCCeEEEEEEeCCeEEEeCCCCCHHHHHHHHHHHHHHhhc--Ccc-Cccccccccchhhhhhccccccce
Q 010002 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRG--AEA-DINFSIEDYEDDLKQMSNLTKEEF 234 (520)
Q Consensus 158 SgYRGVt~~kr~GKW~A~I~~~GKri~LGtFdTeEEAArAYD~AAikl~G--~~A-~~NFp~sdYeeELkqL~eLSKEE~ 234 (520)
..|-||.++-+.-|=.+.|+..||-+--|. .++|+|..|.++.+..+.. ... ..||.....-....--..+..+.+
T Consensus 37 e~fpgli~R~~~Pk~~~lIF~SGKiv~TGa-ks~e~~~~a~~~i~~~L~~lg~~~~~~~~~i~NIvas~dl~~~I~Le~l 115 (180)
T 1ytb_A 37 KRFAAVIMRIREPKTTALIFASGKMVVTGA-KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGL 115 (180)
T ss_dssp TTCSSEEEEETTTTEEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHHTCCCCCEEEEEEEEEEEEECSSCBCHHHH
T ss_pred cccCCEEEEeCCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEECCCccCHHHH
Confidence 468889877778888999999999887776 5667888888776655533 211 123332111100000001111111
Q ss_pred eeeecccccCcCCCCccccCeeeec-CCceEEeeccccCceeeeccCCCCHHHHHHHHHHHHHH
Q 010002 235 VHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVK 297 (520)
Q Consensus 235 V~aLRRqs~g~~r~sSkYRGV~~~k-~GKW~ArI~~~~~gK~v~LGtFdTeEEAARAYDkAAik 297 (520)
........ .=....|-|+.++- .-|-...| +..||-+..|. .+++|+..|++.-.-.
T Consensus 116 a~~~~~~~---~YEPE~fPGliyR~~~pkv~~lI--F~SGkivitGa-k~~~~~~~a~~~i~p~ 173 (180)
T 1ytb_A 116 AFSHGTFS---SYEPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KQREEIYQAFEAIYPV 173 (180)
T ss_dssp HHHTTTTE---ECCTTTCSSEEEECSSSCCEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHH
T ss_pred HHhcccce---EECCccCCcEEEEeCCCcEEEEE--ecCCeEEEEec-CCHHHHHHHHHHHHHH
Confidence 11111110 11235788988763 33445555 78888888886 4577888888775433
No 14
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=29.64 E-value=62 Score=30.72 Aligned_cols=42 Identities=17% Similarity=0.014 Sum_probs=30.2
Q ss_pred cCeeeecCCceEEeeccccCceeeeccCCCCHHHHHHHHHHHHHHh
Q 010002 253 RGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (520)
Q Consensus 253 RGV~~~k~GKW~ArI~~~~~gK~v~LGtFdTeEEAARAYDkAAikl 298 (520)
.||...+.|.|..+. ..+||++.+|. |..||..+..++...+
T Consensus 14 ~~v~~~~~g~~~~r~--~~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRD--PRTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEEC--TTTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEe--ecCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 467766788999886 45677889996 8888877666554443
No 15
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=27.05 E-value=1.3e+02 Score=29.34 Aligned_cols=133 Identities=16% Similarity=0.161 Sum_probs=75.1
Q ss_pred CCeEEeEEecCCCeEEEEEEeCCeEEEeCCCCCHHHHHHHHHHHHHHhhcCccC---ccccccccchhhhhhccccccce
Q 010002 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEAD---INFSIEDYEDDLKQMSNLTKEEF 234 (520)
Q Consensus 158 SgYRGVt~~kr~GKW~A~I~~~GKri~LGtFdTeEEAArAYD~AAikl~G~~A~---~NFp~sdYeeELkqL~eLSKEE~ 234 (520)
..|-||.++-+.-+=.+.|+..||-+--|. .++|+|..|.++.+..+....-. .||.+...-.....-..+..+.+
T Consensus 97 e~Fpgli~Rl~~Pk~t~lIF~SGKiV~TGa-ks~e~a~~A~~~i~~~L~~lg~~~~~~~f~IqNIVas~dl~f~I~Le~l 175 (240)
T 1rm1_A 97 KRFAAVIMRIREPKTTALIFASGKMVVTGA-KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGL 175 (240)
T ss_dssp TTCSEEEEEEETTEEEEEEETTSEEEEEEE-SSHHHHHHHHHHHHHHHHHHTCCCCCEEEEEEEEEEEEECSSCBCHHHH
T ss_pred cccceEEEEeCCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcccCcceEEEEEEEEeCCCccCHHHH
Confidence 478899887778899999999999887776 46678888877765555332111 23332111100000001111111
Q ss_pred eeeecccccCcCCCCccccCeeeec-CCceEEeeccccCceeeeccCCCCHHHHHHHHHHHHHH
Q 010002 235 VHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVK 297 (520)
Q Consensus 235 V~aLRRqs~g~~r~sSkYRGV~~~k-~GKW~ArI~~~~~gK~v~LGtFdTeEEAARAYDkAAik 297 (520)
......... =....|-|+.++- .-|-...| +..||-+..|. .+++|+..|++.-.-.
T Consensus 176 a~~~~~~~~---YEPE~fPGLiyR~~~pkvvllI--F~SGKIviTGa-K~~~~~~~Ai~~i~p~ 233 (240)
T 1rm1_A 176 AFSHGTFSS---YEPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KQREEIYQAFEAIYPV 233 (240)
T ss_dssp HHHTTTTEE---EETTTEEEEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHH
T ss_pred HHhchhccE---ECCccCCceEEEeCCCcEEEEE--ecCCEEEEEec-CCHHHHHHHHHHHHHH
Confidence 111111100 0124677887763 44555666 78888888876 4677888888775433
Done!