BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010003
         (520 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3AXS|A Chain A, Complex Structure Of Trna Methyltransferase Trm1 From
           Aquifex Aeolicus With Sinefungin
 pdb|3AXT|A Chain A, Complex Structure Of Trna Methyltransferase Trm1 From
           Aquifex Aeolicus With S-Adenosyl-L-Methionine
          Length = 392

 Score = 32.3 bits (72), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 6/97 (6%)

Query: 399 EFCYSCGAEYRDGQQTCQCAFWDEDNSEELTQSVHESEQSAWETFNSLPMIMDAYSDQER 458
           E C  CG+++  G        WDE+ +  L +   + E+   ET   L +I      +E 
Sbjct: 264 EKCPHCGSKFHIGGPLWIGKLWDEEFTNFLYEEAQKREEIEKETKRILKLI------KEE 317

Query: 459 SQLALIQRFLAGGFSLSDHHPYQSPPRCTDSYGDAMK 495
           SQL  +  ++    +     P Q P R    + + ++
Sbjct: 318 SQLQTVGFYVLSKLAEKVKLPAQPPIRIAVKFFNGVR 354


>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
           Heterodimer
          Length = 112

 Score = 30.8 bits (68), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 207 CSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPI 248
           C IC E    P  ++ KC H FC  CM   ++ K   SQ P+
Sbjct: 24  CPICLELIKEP--VSTKCDHIFCKFCMLKLLNQKKGPSQCPL 63


>pdb|1WD2|A Chain A, Solution Structure Of The C-Terminal Ring From A Ring-Ibr-
           Ring (Triad) Motif
          Length = 60

 Score = 30.8 bits (68), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 374 RRCQQCRRMIELTHGCYHMTCW---CGHEFCYSC 404
           + C +C   IE   GC HM C    C  EFC+ C
Sbjct: 7   KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVC 40


>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
          Length = 138

 Score = 30.4 bits (67), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 207 CSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQ 242
           C IC E   +   +T+ C+H FCS+C+  ++  K++
Sbjct: 56  CIICSE--YFIEAVTLNCAHSFCSYCINEWMKRKIE 89


>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
           HETERODIMER
 pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
           HETERODIMER
 pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
           HETERODIMER
 pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
           HETERODIMER
 pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
           HETERODIMER
          Length = 149

 Score = 30.4 bits (67), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 207 CSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQ 242
           C IC E   +   +T+ C+H FCS+C+  ++  K++
Sbjct: 67  CIICSE--YFIEAVTLNCAHSFCSYCINEWMKRKIE 100


>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
          Length = 138

 Score = 30.0 bits (66), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 207 CSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQ 242
           C IC E   +   +T+ C+H FCS+C+  ++  K++
Sbjct: 56  CIICSE--YFIEAVTLNCAHSFCSYCINEWMKRKIE 89


>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
 pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
          Length = 99

 Score = 30.0 bits (66), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 207 CSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQ 242
           C IC E     M+I  +CSH +CS C+R ++  K Q
Sbjct: 25  CGICFEYFNIAMIIP-QCSHNYCSLCIRKFLSYKTQ 59


>pdb|2CT7|A Chain A, Solution Structure Of The Ibr Domain Of The Ring Finger
           Protein 31 Protein
          Length = 86

 Score = 29.6 bits (65), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 3/30 (10%)

Query: 325 CPVCERFICVECGVPW---HSSLSCEEYQN 351
           CP C +  CV C   W   H   SCE++QN
Sbjct: 46  CPQCHQTFCVRCKRQWEEQHRGRSCEDFQN 75


>pdb|1WIM|A Chain A, Solution Structure Of The Ring Finger Domain Of The Human
           Ubcm4-Interacting Protein 4
          Length = 94

 Score = 29.6 bits (65), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 200 GDKSPENCSICCEDKPYPMMITM-KCSHKFCSHCMRTYIDGKVQSS-QVPIRCPQLRC 255
           G      C +C  + P   M T+ +C   FC+ C++ Y++  ++   +  I CP   C
Sbjct: 1   GSSGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC 58


>pdb|3HTK|C Chain C, Crystal Structure Of Mms21 And Smc5 Complex
          Length = 267

 Score = 29.6 bits (65), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 8/63 (12%)

Query: 199 QGDKSPENCSICCEDKPYPM-MITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKY 257
           +G K    C I C  KPY   +I+ KC+H F    ++ Y+ G          CPQ  C  
Sbjct: 176 EGGKIELTCPITC--KPYEAPLISRKCNHVFDRDGIQNYLQGYTTRD-----CPQAACSQ 228

Query: 258 FIS 260
            +S
Sbjct: 229 VVS 231


>pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From
           Lactobacillus Acidophilus Ncfm
          Length = 549

 Score = 29.6 bits (65), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 20/27 (74%)

Query: 441 ETFNSLPMIMDAYSDQERSQLALIQRF 467
           ET+N+ P I + YSD +R +L+++ +F
Sbjct: 242 ETWNATPKIAEEYSDPDRHELSMVFQF 268


>pdb|3ALY|A Chain A, Crystal Structure Of Rnase Hi From Sulfolobus Tokodaii
           With C-Terminal Deletion
 pdb|3ALY|B Chain B, Crystal Structure Of Rnase Hi From Sulfolobus Tokodaii
           With C-Terminal Deletion
          Length = 143

 Score = 29.3 bits (64), Expect = 6.1,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 107 SVADYLALMDGLITAVQNKIRCVYAFTDSELLYDQITREEKLDIPLLVALRQRILEYTSN 166
           +VA+Y  L+  + T ++  I       DS+L+  Q+  E K+    ++ L ++ +E    
Sbjct: 49  NVAEYSGLICLMETMLRLGISSPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKK 108

Query: 167 LEAFVLKLVPSIELERPLRLAQIAVGIV 194
           L A  L  VP  E +   RL+++A  +V
Sbjct: 109 LNA-TLIWVPREENKEADRLSRVAYELV 135


>pdb|2EHG|A Chain A, Crystal Structure Of Hyperthermophilic Archaeal Rnase Hi
          Length = 149

 Score = 29.3 bits (64), Expect = 6.1,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 107 SVADYLALMDGLITAVQNKIRCVYAFTDSELLYDQITREEKLDIPLLVALRQRILEYTSN 166
           +VA+Y  L+  + T ++  I       DS+L+  Q+  E K+    ++ L ++ +E    
Sbjct: 49  NVAEYSGLICLMETMLRLGISSPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKK 108

Query: 167 LEAFVLKLVPSIELERPLRLAQIAVGIV 194
           L A  L  VP  E +   RL+++A  +V
Sbjct: 109 LNA-TLIWVPREENKEADRLSRVAYELV 135


>pdb|1SAC|A Chain A, The Structure Of Pentameric Human Serum Amyloid P
           Component
 pdb|1SAC|B Chain B, The Structure Of Pentameric Human Serum Amyloid P
           Component
 pdb|1SAC|C Chain C, The Structure Of Pentameric Human Serum Amyloid P
           Component
 pdb|1SAC|D Chain D, The Structure Of Pentameric Human Serum Amyloid P
           Component
 pdb|1SAC|E Chain E, The Structure Of Pentameric Human Serum Amyloid P
           Component
 pdb|1LGN|A Chain A, Decameric Damp Complex Of Human Serum Amyloid P Component
 pdb|1LGN|B Chain B, Decameric Damp Complex Of Human Serum Amyloid P Component
 pdb|1LGN|C Chain C, Decameric Damp Complex Of Human Serum Amyloid P Component
 pdb|1LGN|D Chain D, Decameric Damp Complex Of Human Serum Amyloid P Component
 pdb|1LGN|E Chain E, Decameric Damp Complex Of Human Serum Amyloid P Component
 pdb|1GYK|A Chain A, Serum Amyloid P Component Co-Crystallised With Mobdg At
           Neutral Ph
 pdb|1GYK|B Chain B, Serum Amyloid P Component Co-Crystallised With Mobdg At
           Neutral Ph
 pdb|1GYK|C Chain C, Serum Amyloid P Component Co-Crystallised With Mobdg At
           Neutral Ph
 pdb|1GYK|D Chain D, Serum Amyloid P Component Co-Crystallised With Mobdg At
           Neutral Ph
 pdb|1GYK|E Chain E, Serum Amyloid P Component Co-Crystallised With Mobdg At
           Neutral Ph
 pdb|2A3W|A Chain A, Decameric Structure Of Human Serum Amyloid P-Component
           Bound To Bis-1,
           2-{[(Z)-2-Carboxy-2-Methyl-1,
           3-Dioxane]-5-Yloxycarbamoyl}-Ethane
 pdb|2A3W|B Chain B, Decameric Structure Of Human Serum Amyloid P-Component
           Bound To Bis-1,
           2-{[(Z)-2-Carboxy-2-Methyl-1,
           3-Dioxane]-5-Yloxycarbamoyl}-Ethane
 pdb|2A3W|C Chain C, Decameric Structure Of Human Serum Amyloid P-Component
           Bound To Bis-1,
           2-{[(Z)-2-Carboxy-2-Methyl-1,
           3-Dioxane]-5-Yloxycarbamoyl}-Ethane
 pdb|2A3W|D Chain D, Decameric Structure Of Human Serum Amyloid P-Component
           Bound To Bis-1,
           2-{[(Z)-2-Carboxy-2-Methyl-1,
           3-Dioxane]-5-Yloxycarbamoyl}-Ethane
 pdb|2A3W|E Chain E, Decameric Structure Of Human Serum Amyloid P-Component
           Bound To Bis-1,
           2-{[(Z)-2-Carboxy-2-Methyl-1,
           3-Dioxane]-5-Yloxycarbamoyl}-Ethane
 pdb|2A3W|F Chain F, Decameric Structure Of Human Serum Amyloid P-Component
           Bound To Bis-1,
           2-{[(Z)-2-Carboxy-2-Methyl-1,
           3-Dioxane]-5-Yloxycarbamoyl}-Ethane
 pdb|2A3W|G Chain G, Decameric Structure Of Human Serum Amyloid P-Component
           Bound To Bis-1,
           2-{[(Z)-2-Carboxy-2-Methyl-1,
           3-Dioxane]-5-Yloxycarbamoyl}-Ethane
 pdb|2A3W|H Chain H, Decameric Structure Of Human Serum Amyloid P-Component
           Bound To Bis-1,
           2-{[(Z)-2-Carboxy-2-Methyl-1,
           3-Dioxane]-5-Yloxycarbamoyl}-Ethane
 pdb|2A3W|I Chain I, Decameric Structure Of Human Serum Amyloid P-Component
           Bound To Bis-1,
           2-{[(Z)-2-Carboxy-2-Methyl-1,
           3-Dioxane]-5-Yloxycarbamoyl}-Ethane
 pdb|2A3W|J Chain J, Decameric Structure Of Human Serum Amyloid P-Component
           Bound To Bis-1,
           2-{[(Z)-2-Carboxy-2-Methyl-1,
           3-Dioxane]-5-Yloxycarbamoyl}-Ethane
 pdb|2A3W|K Chain K, Decameric Structure Of Human Serum Amyloid P-Component
           Bound To Bis-1,
           2-{[(Z)-2-Carboxy-2-Methyl-1,
           3-Dioxane]-5-Yloxycarbamoyl}-Ethane
 pdb|2A3W|L Chain L, Decameric Structure Of Human Serum Amyloid P-Component
           Bound To Bis-1,
           2-{[(Z)-2-Carboxy-2-Methyl-1,
           3-Dioxane]-5-Yloxycarbamoyl}-Ethane
 pdb|2A3W|M Chain M, Decameric Structure Of Human Serum Amyloid P-Component
           Bound To Bis-1,
           2-{[(Z)-2-Carboxy-2-Methyl-1,
           3-Dioxane]-5-Yloxycarbamoyl}-Ethane
 pdb|2A3W|N Chain N, Decameric Structure Of Human Serum Amyloid P-Component
           Bound To Bis-1,
           2-{[(Z)-2-Carboxy-2-Methyl-1,
           3-Dioxane]-5-Yloxycarbamoyl}-Ethane
 pdb|2A3W|O Chain O, Decameric Structure Of Human Serum Amyloid P-Component
           Bound To Bis-1,
           2-{[(Z)-2-Carboxy-2-Methyl-1,
           3-Dioxane]-5-Yloxycarbamoyl}-Ethane
 pdb|2A3W|P Chain P, Decameric Structure Of Human Serum Amyloid P-Component
           Bound To Bis-1,
           2-{[(Z)-2-Carboxy-2-Methyl-1,
           3-Dioxane]-5-Yloxycarbamoyl}-Ethane
 pdb|2A3W|Q Chain Q, Decameric Structure Of Human Serum Amyloid P-Component
           Bound To Bis-1,
           2-{[(Z)-2-Carboxy-2-Methyl-1,
           3-Dioxane]-5-Yloxycarbamoyl}-Ethane
 pdb|2A3W|R Chain R, Decameric Structure Of Human Serum Amyloid P-Component
           Bound To Bis-1,
           2-{[(Z)-2-Carboxy-2-Methyl-1,
           3-Dioxane]-5-Yloxycarbamoyl}-Ethane
 pdb|2A3W|S Chain S, Decameric Structure Of Human Serum Amyloid P-Component
           Bound To Bis-1,
           2-{[(Z)-2-Carboxy-2-Methyl-1,
           3-Dioxane]-5-Yloxycarbamoyl}-Ethane
 pdb|2A3W|T Chain T, Decameric Structure Of Human Serum Amyloid P-Component
           Bound To Bis-1,
           2-{[(Z)-2-Carboxy-2-Methyl-1,
           3-Dioxane]-5-Yloxycarbamoyl}-Ethane
 pdb|2A3X|A Chain A, Decameric Crystal Structure Of Human Serum Amyloid
           P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
           2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
 pdb|2A3X|B Chain B, Decameric Crystal Structure Of Human Serum Amyloid
           P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
           2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
 pdb|2A3X|C Chain C, Decameric Crystal Structure Of Human Serum Amyloid
           P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
           2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
 pdb|2A3X|D Chain D, Decameric Crystal Structure Of Human Serum Amyloid
           P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
           2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
 pdb|2A3X|E Chain E, Decameric Crystal Structure Of Human Serum Amyloid
           P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
           2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
 pdb|2A3X|F Chain F, Decameric Crystal Structure Of Human Serum Amyloid
           P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
           2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
 pdb|2A3X|G Chain G, Decameric Crystal Structure Of Human Serum Amyloid
           P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
           2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
 pdb|2A3X|H Chain H, Decameric Crystal Structure Of Human Serum Amyloid
           P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
           2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
 pdb|2A3X|I Chain I, Decameric Crystal Structure Of Human Serum Amyloid
           P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
           2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
 pdb|2A3X|J Chain J, Decameric Crystal Structure Of Human Serum Amyloid
           P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
           2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
 pdb|2A3Y|A Chain A, Pentameric Crystal Structure Of Human Serum Amyloid
           P-Component Bound To
           Bis-1,2-{[(Z)-2carboxy-2-Methyl-1,
           3-Dioxane]-5-Yloxycarbamoyl}- Ethane.
 pdb|2A3Y|B Chain B, Pentameric Crystal Structure Of Human Serum Amyloid
           P-Component Bound To
           Bis-1,2-{[(Z)-2carboxy-2-Methyl-1,
           3-Dioxane]-5-Yloxycarbamoyl}- Ethane.
 pdb|2A3Y|C Chain C, Pentameric Crystal Structure Of Human Serum Amyloid
           P-Component Bound To
           Bis-1,2-{[(Z)-2carboxy-2-Methyl-1,
           3-Dioxane]-5-Yloxycarbamoyl}- Ethane.
 pdb|2A3Y|D Chain D, Pentameric Crystal Structure Of Human Serum Amyloid
           P-Component Bound To
           Bis-1,2-{[(Z)-2carboxy-2-Methyl-1,
           3-Dioxane]-5-Yloxycarbamoyl}- Ethane.
 pdb|2A3Y|E Chain E, Pentameric Crystal Structure Of Human Serum Amyloid
           P-Component Bound To
           Bis-1,2-{[(Z)-2carboxy-2-Methyl-1,
           3-Dioxane]-5-Yloxycarbamoyl}- Ethane.
 pdb|3D5O|A Chain A, Structural Recognition And Functional Activation Of Fcrr
           By Innate Pentraxins
 pdb|3D5O|B Chain B, Structural Recognition And Functional Activation Of Fcrr
           By Innate Pentraxins
 pdb|3D5O|C Chain C, Structural Recognition And Functional Activation Of Fcrr
           By Innate Pentraxins
 pdb|3D5O|D Chain D, Structural Recognition And Functional Activation Of Fcrr
           By Innate Pentraxins
 pdb|3D5O|E Chain E, Structural Recognition And Functional Activation Of Fcrr
           By Innate Pentraxins
 pdb|2W08|A Chain A, The Structure Of Serum Amyloid P Component Bound To 0-
           Phospho-Threonine
 pdb|2W08|B Chain B, The Structure Of Serum Amyloid P Component Bound To 0-
           Phospho-Threonine
 pdb|2W08|C Chain C, The Structure Of Serum Amyloid P Component Bound To 0-
           Phospho-Threonine
 pdb|2W08|D Chain D, The Structure Of Serum Amyloid P Component Bound To 0-
           Phospho-Threonine
 pdb|2W08|E Chain E, The Structure Of Serum Amyloid P Component Bound To 0-
           Phospho-Threonine
 pdb|3KQR|A Chain A, The Structure Of Serum Amyloid P Component Bound To
           Phosphoethanolamine
 pdb|3KQR|B Chain B, The Structure Of Serum Amyloid P Component Bound To
           Phosphoethanolamine
 pdb|3KQR|C Chain C, The Structure Of Serum Amyloid P Component Bound To
           Phosphoethanolamine
 pdb|3KQR|D Chain D, The Structure Of Serum Amyloid P Component Bound To
           Phosphoethanolamine
 pdb|3KQR|E Chain E, The Structure Of Serum Amyloid P Component Bound To
           Phosphoethanolamine
          Length = 204

 Score = 29.3 bits (64), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 32/66 (48%)

Query: 99  KLDFFVEESVADYLALMDGLITAVQNKIRCVYAFTDSELLYDQITREEKLDIPLLVALRQ 158
           K+  F  ESV D++ L+  L   +QN   C  A++D    Y   +   +     L+  ++
Sbjct: 7   KVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKE 66

Query: 159 RILEYT 164
           R+ EY+
Sbjct: 67  RVGEYS 72


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,833,506
Number of Sequences: 62578
Number of extensions: 532435
Number of successful extensions: 1075
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1063
Number of HSP's gapped (non-prelim): 31
length of query: 520
length of database: 14,973,337
effective HSP length: 103
effective length of query: 417
effective length of database: 8,527,803
effective search space: 3556093851
effective search space used: 3556093851
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)