Query 010004
Match_columns 520
No_of_seqs 269 out of 1770
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 19:54:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010004.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010004hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1965 Sodium/hydrogen exchan 100.0 4.6E-83 1E-87 657.3 31.0 494 9-512 26-548 (575)
2 TIGR00840 b_cpa1 sodium/hydrog 100.0 2.3E-72 5.1E-77 601.9 42.5 457 20-518 11-479 (559)
3 KOG1966 Sodium/hydrogen exchan 100.0 1.9E-74 4.1E-79 589.1 6.9 450 20-512 44-505 (670)
4 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 3.4E-53 7.4E-58 454.5 43.2 392 33-444 12-412 (525)
5 COG0025 NhaP NhaP-type Na+/H+ 100.0 3.6E-51 7.7E-56 427.4 43.3 398 21-443 9-409 (429)
6 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 2.3E-45 5E-50 395.3 42.3 396 17-435 12-435 (810)
7 PRK05326 potassium/proton anti 100.0 8.4E-45 1.8E-49 394.7 39.0 388 20-447 8-398 (562)
8 COG3263 NhaP-type Na+/H+ and K 100.0 5.6E-43 1.2E-47 345.4 30.9 383 19-445 7-394 (574)
9 KOG4505 Na+/H+ antiporter [Ino 100.0 1.1E-33 2.4E-38 270.7 28.1 388 27-436 22-431 (467)
10 PF00999 Na_H_Exchanger: Sodiu 100.0 1.5E-35 3.2E-40 308.6 0.3 371 30-438 8-380 (380)
11 COG0475 KefB Kef-type K+ trans 100.0 5E-26 1.1E-30 236.3 38.3 378 19-442 7-390 (397)
12 PLN03159 cation/H(+) antiporte 100.0 3.1E-26 6.8E-31 257.1 38.2 345 24-398 49-403 (832)
13 PRK03562 glutathione-regulated 100.0 3.9E-26 8.5E-31 249.9 37.1 364 19-430 6-374 (621)
14 PRK10669 putative cation:proto 100.0 4.1E-25 8.9E-30 240.7 38.7 369 21-433 9-385 (558)
15 TIGR00932 2a37 transporter, mo 100.0 6.8E-26 1.5E-30 225.3 28.9 268 29-319 3-272 (273)
16 PRK03659 glutathione-regulated 100.0 1.1E-24 2.4E-29 238.1 40.4 357 24-429 11-370 (601)
17 COG4651 RosB Kef-type K+ trans 99.6 1.3E-13 2.9E-18 131.7 26.6 367 20-433 8-385 (408)
18 KOG1650 Predicted K+/H+-antipo 99.6 1.5E-13 3.2E-18 153.0 21.3 389 19-442 23-423 (769)
19 PRK14853 nhaA pH-dependent sod 99.1 4.5E-07 9.8E-12 93.6 30.8 272 78-396 65-355 (423)
20 TIGR00773 NhaA Na+/H+ antiport 98.4 3.3E-05 7.1E-10 78.6 18.9 255 79-382 56-326 (373)
21 PRK09560 nhaA pH-dependent sod 97.5 0.033 7.2E-07 57.1 22.3 268 78-396 62-345 (389)
22 COG0786 GltS Na+/glutamate sym 97.3 0.25 5.3E-06 50.6 25.5 81 31-117 18-105 (404)
23 PRK09561 nhaA pH-dependent sod 97.2 0.094 2E-06 53.8 21.6 267 79-396 63-343 (388)
24 PRK14855 nhaA pH-dependent sod 97.1 0.12 2.5E-06 53.8 21.6 264 79-396 67-375 (423)
25 PRK14856 nhaA pH-dependent sod 97.1 0.14 3E-06 53.5 21.8 308 79-441 72-432 (438)
26 PF13593 DUF4137: SBF-like CPA 97.0 0.3 6.5E-06 49.5 23.1 152 73-231 26-182 (313)
27 PF06965 Na_H_antiport_1: Na+/ 96.6 0.017 3.7E-07 59.0 10.5 261 78-382 58-333 (378)
28 PF03616 Glt_symporter: Sodium 96.5 1.3 2.7E-05 46.1 27.7 70 41-115 32-101 (368)
29 PRK14854 nhaA pH-dependent sod 96.5 0.67 1.5E-05 47.5 21.2 268 78-396 59-340 (383)
30 COG3004 NhaA Na+/H+ antiporter 96.1 1.3 2.9E-05 44.1 20.2 271 82-398 69-352 (390)
31 PF03601 Cons_hypoth698: Conse 95.7 2.7 5.9E-05 42.3 23.9 114 41-165 24-140 (305)
32 PRK03659 glutathione-regulated 94.9 0.88 1.9E-05 50.5 16.4 72 79-157 266-337 (601)
33 PRK03562 glutathione-regulated 94.7 1 2.2E-05 50.1 16.2 71 79-156 269-339 (621)
34 PRK10669 putative cation:proto 94.4 1.6 3.5E-05 48.0 16.9 72 79-157 277-348 (558)
35 PF01758 SBF: Sodium Bile acid 93.9 1.8 4E-05 40.2 13.9 145 82-235 2-149 (187)
36 COG0385 Predicted Na+-dependen 93.8 8.3 0.00018 38.9 19.4 148 79-236 39-190 (319)
37 COG2855 Predicted membrane pro 93.1 1.8 3.9E-05 43.6 12.8 139 42-195 36-177 (334)
38 PF03956 DUF340: Membrane prot 92.7 0.55 1.2E-05 43.9 8.2 129 48-194 3-136 (191)
39 PLN03159 cation/H(+) antiporte 92.4 1.8 3.8E-05 50.0 13.4 71 80-157 324-396 (832)
40 COG0475 KefB Kef-type K+ trans 90.9 2.9 6.4E-05 43.8 12.2 71 79-156 273-344 (397)
41 TIGR00808 malonate_madM malona 90.8 7.7 0.00017 36.2 13.0 96 28-127 26-128 (254)
42 COG2431 Predicted membrane pro 90.7 2.1 4.6E-05 41.7 9.9 89 45-150 108-201 (297)
43 PF06826 Asp-Al_Ex: Predicted 90.0 6.7 0.00014 35.9 12.2 85 42-130 22-109 (169)
44 PF03812 KdgT: 2-keto-3-deoxyg 89.1 26 0.00057 35.1 19.0 129 37-168 4-136 (314)
45 TIGR00210 gltS sodium--glutama 88.7 34 0.00074 35.9 29.0 30 255-284 228-262 (398)
46 PF05982 DUF897: Domain of unk 87.4 6.7 0.00014 39.5 11.1 138 44-194 177-323 (327)
47 COG3493 CitS Na+/citrate sympo 87.3 38 0.00082 34.9 21.7 61 79-146 112-172 (438)
48 PF03616 Glt_symporter: Sodium 86.9 28 0.00061 36.1 15.9 96 29-130 232-331 (368)
49 TIGR03082 Gneg_AbrB_dup membra 86.6 24 0.00052 31.8 14.3 109 26-149 3-113 (156)
50 TIGR00698 conserved hypothetic 86.4 41 0.0009 34.4 28.0 114 42-165 30-146 (335)
51 PRK12460 2-keto-3-deoxyglucona 86.2 3.4 7.3E-05 41.4 8.3 58 83-147 197-254 (312)
52 PF05684 DUF819: Protein of un 86.1 46 0.001 34.6 27.9 86 41-132 23-108 (378)
53 PF03390 2HCT: 2-hydroxycarbox 85.3 18 0.0004 37.8 13.4 153 16-176 244-404 (414)
54 PF05145 AmoA: Putative ammoni 85.3 35 0.00075 34.7 15.4 108 24-145 158-267 (318)
55 COG1346 LrgB Putative effector 85.1 36 0.00078 32.5 16.8 72 89-171 75-149 (230)
56 TIGR00841 bass bile acid trans 84.1 48 0.001 33.0 20.0 70 83-161 13-85 (286)
57 TIGR00210 gltS sodium--glutama 83.3 63 0.0014 33.9 16.8 154 25-188 222-389 (398)
58 KOG3826 Na+/H+ antiporter [Ino 82.3 3.2 7E-05 39.5 5.8 78 79-162 159-236 (252)
59 TIGR00783 ccs citrate carrier 81.8 31 0.00067 35.3 13.1 143 25-176 186-337 (347)
60 PRK04125 murein hydrolase regu 77.1 28 0.00061 30.8 9.8 107 19-130 8-117 (141)
61 TIGR00832 acr3 arsenical-resis 76.7 92 0.002 31.7 21.5 138 82-227 47-195 (328)
62 PF03601 Cons_hypoth698: Conse 76.1 83 0.0018 31.8 14.2 34 249-282 4-41 (305)
63 COG2855 Predicted membrane pro 73.8 84 0.0018 32.0 13.3 149 261-441 31-180 (334)
64 TIGR00698 conserved hypothetic 73.6 1.1E+02 0.0024 31.3 14.5 36 248-283 7-47 (335)
65 TIGR00400 mgtE Mg2+ transporte 73.1 71 0.0015 34.1 13.7 32 161-193 411-443 (449)
66 PRK03818 putative transporter; 73.1 38 0.00083 37.2 11.8 77 46-130 33-115 (552)
67 TIGR03802 Asp_Ala_antiprt aspa 72.7 44 0.00096 36.8 12.2 120 30-166 18-144 (562)
68 PRK05326 potassium/proton anti 72.6 26 0.00057 38.5 10.6 30 80-109 276-305 (562)
69 COG3493 CitS Na+/citrate sympo 71.0 61 0.0013 33.4 11.5 142 25-176 271-423 (438)
70 PRK01658 holin-like protein; V 68.8 63 0.0014 27.9 9.8 106 20-130 6-114 (122)
71 PF03547 Mem_trans: Membrane t 66.2 1.6E+02 0.0036 30.2 14.8 46 269-319 8-54 (385)
72 PRK04972 putative transporter; 65.8 1.8E+02 0.0038 32.1 15.0 104 42-164 36-144 (558)
73 PRK04972 putative transporter; 65.2 91 0.002 34.4 12.7 127 27-166 390-527 (558)
74 COG3180 AbrB Putative ammonia 63.5 1.8E+02 0.004 29.8 13.8 109 23-145 190-300 (352)
75 TIGR00659 conserved hypothetic 63.2 1.5E+02 0.0032 28.6 12.7 33 95-127 78-110 (226)
76 TIGR00844 c_cpa1 na(+)/h(+) an 62.1 59 0.0013 37.2 10.5 73 249-321 20-92 (810)
77 COG0786 GltS Na+/glutamate sym 61.2 2.1E+02 0.0046 29.8 14.6 153 24-186 224-390 (404)
78 PRK01821 hypothetical protein; 60.9 1E+02 0.0022 27.0 9.7 106 20-130 11-119 (133)
79 KOG1650 Predicted K+/H+-antipo 57.7 31 0.00067 39.5 7.6 74 78-159 310-383 (769)
80 COG0798 ACR3 Arsenite efflux p 57.0 2.3E+02 0.005 28.9 26.3 176 45-237 19-202 (342)
81 PF06912 DUF1275: Protein of u 56.5 1.2E+02 0.0027 28.3 10.6 29 170-198 3-32 (209)
82 PF03818 MadM: Malonate/sodium 55.3 57 0.0012 24.2 5.9 35 24-59 21-55 (60)
83 PF04172 LrgB: LrgB-like famil 54.9 1.7E+02 0.0037 27.9 11.0 49 80-128 51-101 (215)
84 PRK10711 hypothetical protein; 54.5 1.9E+02 0.0042 27.8 11.3 31 95-125 79-109 (231)
85 TIGR01625 YidE_YbjL_dupl AspT/ 53.8 1.7E+02 0.0036 26.3 10.6 107 43-162 21-135 (154)
86 PRK12460 2-keto-3-deoxyglucona 52.5 2.6E+02 0.0057 28.2 21.5 121 41-168 8-131 (312)
87 KOG2718 Na+-bile acid cotransp 52.0 66 0.0014 33.3 8.2 186 82-277 117-320 (371)
88 TIGR03802 Asp_Ala_antiprt aspa 50.0 3.2E+02 0.0069 30.2 13.7 106 45-163 417-529 (562)
89 PF03812 KdgT: 2-keto-3-deoxyg 47.0 52 0.0011 33.1 6.3 40 81-120 200-239 (314)
90 PRK03818 putative transporter; 46.7 1.7E+02 0.0037 32.2 11.0 103 46-161 403-513 (552)
91 TIGR00793 kdgT 2-keto-3-deoxyg 46.7 81 0.0018 31.6 7.5 40 81-120 200-239 (314)
92 TIGR00946 2a69 he Auxin Efflux 46.2 2E+02 0.0044 28.9 10.9 136 50-194 184-321 (321)
93 COG2985 Predicted permease [Ge 46.0 74 0.0016 34.0 7.4 133 17-165 364-510 (544)
94 PF03390 2HCT: 2-hydroxycarbox 45.8 3.9E+02 0.0084 28.2 28.7 61 79-146 95-155 (414)
95 PF11286 DUF3087: Protein of u 44.9 74 0.0016 28.9 6.4 68 94-164 5-72 (165)
96 PF15176 LRR19-TM: Leucine-ric 44.5 84 0.0018 25.9 6.0 15 413-427 20-34 (102)
97 PRK04288 antiholin-like protei 42.7 3.2E+02 0.0069 26.4 24.0 33 95-127 84-116 (232)
98 TIGR00783 ccs citrate carrier 40.2 4.3E+02 0.0094 27.2 23.2 61 79-146 26-86 (347)
99 TIGR00793 kdgT 2-keto-3-deoxyg 39.7 1.3E+02 0.0028 30.3 7.7 138 41-183 8-150 (314)
100 PF00999 Na_H_Exchanger: Sodiu 37.6 19 0.0004 37.3 1.7 101 42-156 233-337 (380)
101 PF13194 DUF4010: Domain of un 34.3 4.1E+02 0.0089 25.2 13.9 62 123-186 7-68 (211)
102 PF06610 DUF1144: Protein of u 33.6 1.5E+02 0.0032 26.0 6.2 60 178-237 81-140 (143)
103 PF06123 CreD: Inner membrane 31.4 4.9E+02 0.011 27.6 11.0 40 19-60 300-339 (430)
104 COG1380 Putative effector of m 30.1 3.7E+02 0.008 23.4 8.6 39 92-130 77-115 (128)
105 TIGR03136 malonate_biotin Na+- 29.5 4.1E+02 0.0088 27.5 9.5 71 161-237 262-333 (399)
106 COG2985 Predicted permease [Ge 29.4 3.5E+02 0.0076 29.1 9.3 85 79-168 60-147 (544)
107 TIGR00932 2a37 transporter, mo 27.0 5.9E+02 0.013 24.7 14.9 59 257-321 6-64 (273)
108 PF05982 DUF897: Domain of unk 26.8 6.9E+02 0.015 25.4 12.8 84 78-168 28-114 (327)
109 COG3329 Predicted permease [Ge 25.8 2.2E+02 0.0047 28.6 6.6 121 32-163 205-331 (372)
110 PF15179 Myc_target_1: Myc tar 25.6 1.3E+02 0.0028 27.7 4.7 29 210-238 19-47 (197)
111 PF12911 OppC_N: N-terminal TM 24.5 1.2E+02 0.0027 21.6 3.8 21 97-117 9-29 (56)
112 COG0679 Predicted permeases [G 24.4 4.1E+02 0.009 26.7 8.8 128 50-187 170-298 (311)
113 PRK01663 C4-dicarboxylate tran 24.0 8.8E+02 0.019 25.7 21.3 36 94-130 63-99 (428)
114 PRK00523 hypothetical protein; 23.3 3.1E+02 0.0068 21.2 5.7 17 216-232 11-27 (72)
115 PRK01844 hypothetical protein; 23.3 3E+02 0.0064 21.4 5.6 17 216-232 10-26 (72)
116 KOG4255 Uncharacterized conser 23.2 5.2E+02 0.011 26.6 8.8 98 335-441 112-215 (439)
117 COG5505 Predicted integral mem 22.5 8.2E+02 0.018 24.8 12.2 53 77-130 59-111 (384)
118 PRK11715 inner membrane protei 21.3 8.9E+02 0.019 25.8 10.7 41 19-61 306-346 (436)
119 TIGR01109 Na_pump_decarbB sodi 20.8 7.9E+02 0.017 25.1 9.5 38 137-188 212-250 (354)
120 TIGR02230 ATPase_gene1 F0F1-AT 20.3 3.1E+02 0.0068 22.7 5.6 34 25-58 54-89 (100)
121 PF03788 LrgA: LrgA family; I 20.0 3.7E+02 0.0081 22.0 6.1 44 81-124 50-93 (96)
No 1
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-83 Score=657.33 Aligned_cols=494 Identities=46% Similarity=0.730 Sum_probs=428.1
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHHHHHhhcC--cchhHHHHHHHHHHHHHHHHhhccccCc---cccccChhHHHHHh
Q 010004 9 NITQEHTQVVPISLFVAILCLCLIVGHLLEENR--WVNESITAILIGCVSGIIILSITKWKSS---HILRFDEELFFIYL 83 (520)
Q Consensus 9 ~~~~~~~~~~~l~~~~~lL~~~~~~~~~~~~~~--~lp~~~~~ll~Gll~G~~~~~~~~~~~~---~~~~~~~~~f~~~~ 83 (520)
.++++|++.+.+++++.+|+++++.+|+++++| ++||++..+++|+++|.++++...++++ ....++||.|+.++
T Consensus 26 ~~~~e~~~~~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~ff~vL 105 (575)
T KOG1965|consen 26 ASEQEHASSVALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLFFLVL 105 (575)
T ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHHHHHh
Confidence 356789999999999999999999999999765 9999999999999999999988887777 67799999999999
Q ss_pred hHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhh
Q 010004 84 LPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILN 163 (520)
Q Consensus 84 L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~ 163 (520)
||||+|++||++++++|+||+++|+.++++||++++.++|.+++++.......+++|.+|+++||++||||||+|++|++
T Consensus 106 LPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvLaIfn 185 (575)
T KOG1965|consen 106 LPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFN 185 (575)
T ss_pred hchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHHHHHH
Confidence 99999999999999999999999999999999999999999998875433344899999999999999999999999999
Q ss_pred cCCC-cchhhhhhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 010004 164 QDET-PLLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKH 242 (520)
Q Consensus 164 ~~~~-~~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~~~~~~~~ 242 (520)
|+++ |++|++++|||++|||++||+|+++..+...+.+.....+.++.|++.+++|..+|+++|++.++++|+++. |+
T Consensus 186 el~vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l-~~ 264 (575)
T KOG1965|consen 186 ELGVDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYL-RR 264 (575)
T ss_pred HhCCCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC
Confidence 9987 689999999999999999999999999988776666667899999999999999999999999999999987 57
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccchhhh
Q 010004 243 SSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDI 322 (520)
Q Consensus 243 ~~~~e~~l~l~~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~ 322 (520)
.+..|..++++++|.+|++||.+|+||++++++||++|+||+++|+++++|.++||+|+++++++|+++|.|+|+.+.+.
T Consensus 265 ~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~ 344 (575)
T KOG1965|consen 265 TPSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDF 344 (575)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-CCCCCccchhhheecCCchhHHHHHHhhhhhcc
Q 010004 323 EKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHR-SPSISFNHQVVIWWAGLMRGAVSIALAFKQFTY 401 (520)
Q Consensus 323 ~~w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~ 401 (520)
++|.+. .+++.....++++++|++.+||++++.|+.||.. .++++.|+|.+|||+|..|||+++|||.....+
T Consensus 345 ~k~~~~------~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~ 418 (575)
T KOG1965|consen 345 QKHVYK------SLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTD 418 (575)
T ss_pred cceeee------chHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccc
Confidence 888654 1344555667899999999999999999998754 556999999999999944999999999976443
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHhhhhhchHHHHHHhCCCCCCCCCCCCC--------C--------CCCCCccCCCCc
Q 010004 402 SGVTSDPDSATMITATIIIVLFTTLVFGFLTRPLVKYLLPHPQHATNNSCR--------E--------PKSPNEDMNLPL 465 (520)
Q Consensus 402 ~~~~~~~~~~~i~~~t~~vVl~T~~v~g~~~~~l~~~l~~~~~~~~~~~~~--------~--------~~~~~~~~~~~~ 465 (520)
.+++ .+++++++|+.+|++|+++.|.++.|+++++.++.++..+.+++ + ..+..++.+++.
T Consensus 419 ~~~~---~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~i~~ 495 (575)
T KOG1965|consen 419 SPHT---GGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLMISVGVAADEVDESWRLEPGVEFYLVTKLGVLSLTSSAYITI 495 (575)
T ss_pred cccc---cccEEEEeeeeeeeeeeeeeCCccHHHHHHhcccccccccccchhhhccccccccccccccccccccccCcch
Confidence 3221 56999999999999999999999999999999876654421100 0 001112222221
Q ss_pred ------ccCCcccccccccccccccccccCCchhhhhHHhhhhccccccccCC
Q 010004 466 ------LSFDESTATNLLRAKDSLSMLLDRPVYTIHSFWRRFDDTYMRPVFGG 512 (520)
Q Consensus 466 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~d~~~~~p~~~~ 512 (520)
...+|+...+..++..+.+....+++...|..|+++|+..+++.+++
T Consensus 496 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (575)
T KOG1965|consen 496 LQLRQAELFDEPTRSSDSRFLLSLGFFQLTYTSLTHLYGRIFSRTSMRHIFGQ 548 (575)
T ss_pred hhhhhhhhccccCCccCccccccccceeeeecccccccccccCcchhcccccc
Confidence 11223333334556667777778889999999999999999999998
No 2
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=100.00 E-value=2.3e-72 Score=601.94 Aligned_cols=457 Identities=29% Similarity=0.456 Sum_probs=386.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHH
Q 010004 20 ISLFVAILCLCLIVGHLLEE-NRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKK 98 (520)
Q Consensus 20 l~~~~~lL~~~~~~~~~~~~-~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~ 98 (520)
+.+.+++.+++.+.-|+.+| .+++|+++.++++|+++|++...... .+...+++++|+.++||||+|++|+++|+|
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~---~~~~~l~~~lf~~~~LPpIlFe~g~~l~~~ 87 (559)
T TIGR00840 11 FILWILLASLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPH---IDPPTLDSSYFFLYLLPPIVLDAGYFMPQR 87 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCC---CccCCcCHHHHHHHHHHHHHHHHHhcCCHH
Confidence 45555566666666666665 34699999999999999987665432 123578999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--CCCCcHHHHHHhhhhcccccHHHHHHhhhcCCCc-chhhhhh
Q 010004 99 QFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLG--FMGLSIQDYLALGTIFSSTDTVCTLQILNQDETP-LLYSLVF 175 (520)
Q Consensus 99 ~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~--~~~~~~~~all~GailsaTdpv~v~~il~~~~~~-~l~~ll~ 175 (520)
.|++|+++|+.+|++|++++++++|..+|++.+..+ ..+++|.+|+++||++|||||+++++++++.+.| +++++++
T Consensus 88 ~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~v~~~L~~ll~ 167 (559)
T TIGR00840 88 NFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYHVNEKLYIIIF 167 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcCCCcchhhhee
Confidence 999999999999999999999999999887655332 2368999999999999999999999999999977 7999999
Q ss_pred hhhhchhHHHHHHHHHHHHHHh---hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 010004 176 GEGVVNDATSVVLFNAVQKIDV---RELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVREIALMV 252 (520)
Q Consensus 176 gEs~lND~~aivlf~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~~~~~~~~~~~~e~~l~l 252 (520)
|||++||++|+++|.++.++.. ++.+..++...+..++...+||+++|+++|++.++++|+.. +.+..|..+++
T Consensus 168 gESllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~---~~~~~e~~l~l 244 (559)
T TIGR00840 168 GESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTH---HIRQIEPLFVF 244 (559)
T ss_pred hhhhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccchhHHHHHH
Confidence 9999999999999999888764 22333445556677888888999999999999999999873 34467899999
Q ss_pred HHHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccchhhh-hhhhhcccc
Q 010004 253 LMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDI-EKWRMSKLS 331 (520)
Q Consensus 253 ~~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~-~~w~~~~~~ 331 (520)
+++|++|.+||.+|+||++|+++||++++||.+.|.+++++...+++|+++++++|+++|+++|+++... ..|+
T Consensus 245 ~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~~~----- 319 (559)
T TIGR00840 245 LISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEWN----- 319 (559)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHH-----
Confidence 9999999999999999999999999999999999999999999999999999999999999999987543 2332
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhccCCCCCCcchh
Q 010004 332 FVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSA 411 (520)
Q Consensus 332 ~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~~~~~~~~~~~ 411 (520)
+...++.+++++++|++++++++++.|..+ ..++++|||++++|+| +||++++++|+... ....+.++
T Consensus 320 ----~~~i~~~l~~~ll~R~l~V~~~~~~~~~~~---~~~~~~~e~~il~w~G-lRGaVa~aLAl~l~----~~~~~~~~ 387 (559)
T TIGR00840 320 ----WAFVVATLSFCVIYRVLGVRTLSWITNEFR---PVEIPYKDQLVIFYAG-LRGAVAFALALLLD----EKIFPYKF 387 (559)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCChhhhhheeeec-cccHHHHHHHHhCC----CCCcchHH
Confidence 233345566789999999999999888765 4689999999999999 59999999998642 23457899
Q ss_pred hHHHHHHHHHHHHHhhhhhchHHHHHHhCCCCCCCCCCCCCCCCCCCccCCCCcccCC----cccccccccccccccccc
Q 010004 412 TMITATIIIVLFTTLVFGFLTRPLVKYLLPHPQHATNNSCREPKSPNEDMNLPLLSFD----ESTATNLLRAKDSLSMLL 487 (520)
Q Consensus 412 ~i~~~t~~vVl~T~~v~g~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 487 (520)
.++++|+.+|++|+++||.+++|++++++.+++++.+ ++.+|++|.+.+||. ||.+|+
T Consensus 388 ~i~~~t~~VVl~TvlvqG~T~~pl~~~L~l~~~~~~~------~~~~e~~~~~~~~~~~~~ie~~~g~------------ 449 (559)
T TIGR00840 388 LFVTTTLVVVFFTVIFQGGTIKPLVEVLKVKKGCISK------TKINEELHDREFDHLLPGIEDICGQ------------ 449 (559)
T ss_pred HHHHHHHeeehHHHHHHHhhHHHHHHHhCCCCCccch------hhHHHHHHHHHHHHHHhHHHHHhhh------------
Confidence 9999999999999999999999999999997654432 233478888888874 888875
Q ss_pred cCCchhhhhHHhhhhccccccccCCCCCCCC
Q 010004 488 DRPVYTIHSFWRRFDDTYMRPVFGGPDSNQS 518 (520)
Q Consensus 488 ~~~~~~~~~~w~~~d~~~~~p~~~~~~~~~~ 518 (520)
.+|+|.++.|++||+||+||++.++..+.+
T Consensus 450 -~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 479 (559)
T TIGR00840 450 -IGHDRAIDKLNGFDIKYLLKPLIRRNSPKS 479 (559)
T ss_pred -cchHHHHHHHHHHhhhhChHhhcCCccccc
Confidence 467999999999999999999999666654
No 3
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-74 Score=589.08 Aligned_cols=450 Identities=29% Similarity=0.534 Sum_probs=393.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHH
Q 010004 20 ISLFVAILCLCLIVGHLLEE-NRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKK 98 (520)
Q Consensus 20 l~~~~~lL~~~~~~~~~~~~-~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~ 98 (520)
+.+.+++..++.+.-|+..+ ++.+||+++++++|+++|.+++...... ...++++.||.++||||+++|||.|+.|
T Consensus 44 i~lwil~asLaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~---~~~L~s~vFFlyLLPPIvlDAGYfMp~r 120 (670)
T KOG1966|consen 44 ITLWILVASLAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIA---PFFLESDVFFLYLLPPIVLDAGYFMPNR 120 (670)
T ss_pred hHHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhccc---cccccccchhhhhcCHHHhcccccCccH
Confidence 55555666777777777766 4459999999999999999888664332 2456899999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC--CcHHHHHHhhhhcccccHHHHHHhhhcCCCc-chhhhhh
Q 010004 99 QFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMG--LSIQDYLALGTIFSSTDTVCTLQILNQDETP-LLYSLVF 175 (520)
Q Consensus 99 ~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~--~~~~~all~GailsaTdpv~v~~il~~~~~~-~l~~ll~ 175 (520)
.|+.|+++|+++|++||+++++.+|...|.+ ...|+.+ .+..+-|+||+++||.|||+|+++++|.++. -|+.+++
T Consensus 121 ~Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i-~~~glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEihVNe~LfI~VF 199 (670)
T KOG1966|consen 121 AFFENLGTILLFAVVGTIWNAFTIGASLYAI-SLSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIHVNEVLFIIVF 199 (670)
T ss_pred HHHhccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhccccEEEeeee
Confidence 9999999999999999999999998877654 3333323 7799999999999999999999999999755 6999999
Q ss_pred hhhhchhHHHHHHHHHHHHHHhh---ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 010004 176 GEGVVNDATSVVLFNAVQKIDVR---ELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVREIALMV 252 (520)
Q Consensus 176 gEs~lND~~aivlf~~~~~~~~~---~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~~~~~~~~~~~~e~~l~l 252 (520)
|||++|||+.+|||+.+.++..- +....+....+.+|+...+||+++|+++|++.++.+|++ ++.+..|+.+.+
T Consensus 200 GESLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft---~~vrviePvfif 276 (670)
T KOG1966|consen 200 GESLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFT---KHVRVLEPVFIF 276 (670)
T ss_pred hhhhhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhh---cceeeecchhhh
Confidence 99999999999999999888553 344445556688899999999999999999999999987 567788999999
Q ss_pred HHHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccchhhhh-hhhhcccc
Q 010004 253 LMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIE-KWRMSKLS 331 (520)
Q Consensus 253 ~~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~~-~w~~~~~~ 331 (520)
.++|++|+.||.+|+|||+|+.+||+.|++|...|+++++..+.+++.++++...|+++|+++|+++.+.. +||
T Consensus 277 ~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~~h~wd----- 351 (670)
T KOG1966|consen 277 LLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSSNHHWD----- 351 (670)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCCcceee-----
Confidence 99999999999999999999999999999999999999999999999999999999999999999997653 455
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhccCCCCCCcchh
Q 010004 332 FVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSA 411 (520)
Q Consensus 332 ~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~~~~~~~~~~~ 411 (520)
+.++++.++.|++.|+++++.+++++|.+| -.+++.++|++|+++|| |||++++|.... +....|.++
T Consensus 352 ----~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr---~~k~~~~DQfimsyGGL-RGAiaF~LV~li----d~~~vp~K~ 419 (670)
T KOG1966|consen 352 ----FAFICLTLVFCLIYRAIGVVVLTWFLNKFR---MVKLEFVDQFIMSYGGL-RGAIAFGLVVLI----DGAKVPAKN 419 (670)
T ss_pred ----hhhhhhHHHHHHHHHHHHhhhhhhhhhhhh---eeeccccceeeeecCCc-chhhheeEEEEe----ccccCCccc
Confidence 345667788999999999999999999887 46999999999999998 999999998865 224678999
Q ss_pred hHHHHHHHHHHHHHhhhhhchHHHHHHhCCCCCCCCCCCCCCCCCCCccCCCCcccCC----cccccccccccccccccc
Q 010004 412 TMITATIIIVLFTTLVFGFLTRPLVKYLLPHPQHATNNSCREPKSPNEDMNLPLLSFD----ESTATNLLRAKDSLSMLL 487 (520)
Q Consensus 412 ~i~~~t~~vVl~T~~v~g~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 487 (520)
+++++|++||+||+++||+|++|+.++|+.++++..+ ++.+|++|.+.+||. ||++|+
T Consensus 420 ~Fvttti~VIfFTVflQGiTIkplvk~L~Vk~~~~~~------~~m~e~i~~~~~dhlm~gIEDi~G~------------ 481 (670)
T KOG1966|consen 420 MFVTTTIAVIFFTVFLQGITIKPLVKFLKVKRKNKRD------PTMNEEIYNRLLDHLMAGIEDIAGQ------------ 481 (670)
T ss_pred ceEeeeeEEEeeeeeecccchHHHHHHHccccccccC------chhhHHHHHHHHHHHHHHHHHHhcc------------
Confidence 9999999999999999999999999999998765443 245688999999984 888886
Q ss_pred cCCchhhhhHHhhhhccccccccCC
Q 010004 488 DRPVYTIHSFWRRFDDTYMRPVFGG 512 (520)
Q Consensus 488 ~~~~~~~~~~w~~~d~~~~~p~~~~ 512 (520)
++|++.++.|++||+||+||++.+
T Consensus 482 -~gh~~~rdk~~~fn~kylrp~L~r 505 (670)
T KOG1966|consen 482 -KGHYYWRDKFERFNNKYLRPLLMR 505 (670)
T ss_pred -cccchhhhhHHHHHhhhchHHHhh
Confidence 478999999999999999998876
No 4
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=100.00 E-value=3.4e-53 Score=454.53 Aligned_cols=392 Identities=22% Similarity=0.369 Sum_probs=315.7
Q ss_pred HHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHH
Q 010004 33 VGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGV 112 (520)
Q Consensus 33 ~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~ 112 (520)
....+.++.++|.+++++++|+++|+.... ....++++.++.++||+++|++|+++|++++|||+++++.+++
T Consensus 12 ~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~-------~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~ 84 (525)
T TIGR00831 12 AVAVTVKFIRLPYPIALILAGLLLGLAGLL-------PEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAF 84 (525)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHhcccc-------CCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 334444445699999999999999974321 1246789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcCCCc-chhhhhhhhhhchhHHHHHHHHH
Q 010004 113 IGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETP-LLYSLVFGEGVVNDATSVVLFNA 191 (520)
Q Consensus 113 ~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~~~~-~l~~ll~gEs~lND~~aivlf~~ 191 (520)
+++++++++++..++++. ++||..|+++||++|||||+++.+++++.+.| |+.++++|||++||++++++|.+
T Consensus 85 ~~vlit~~~v~~~~~~~~------~l~~~~alllGails~TDpvav~~il~~~~~p~rl~~il~gESllND~~alvlf~~ 158 (525)
T TIGR00831 85 LLVVVTTVVVGFSLNWIL------GIPLALALILGAVLSPTDAVAVLGTFKSIRAPKKLSILLEGESLLNDGAALVVFAI 158 (525)
T ss_pred HHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHHHHHHhhhhhhcchHHHHHHHH
Confidence 999999999998888754 89999999999999999999999999999988 79999999999999999999998
Q ss_pred HHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhcchhH
Q 010004 192 VQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGIL 271 (520)
Q Consensus 192 ~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~~~~~~~~~~~~e~~l~l~~~~~~~~~ae~~g~Sgil 271 (520)
...+..++. ..+....+..|++.+++|+++|+++|++..++.|+. .+.+..+..++++++|++|.+||.+|.||++
T Consensus 159 ~~~~~~~~~-~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~---~~~~~~~~~l~l~~~~~~y~lAe~lg~Sgil 234 (525)
T TIGR00831 159 AVAVALGKG-VFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAK---IDDPLVEIALTILAPFAGFLLAERFHFSGVI 234 (525)
T ss_pred HHHHHhcCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 887764311 123445677888899999999999999998887653 3456678899999999999999999999999
Q ss_pred HHHHHHhhhcccccc-cCccchhhhHHHHHHHHHHHHhHHHHHHhccchhhhh--hhhhccccch-hHH---HHHHHHHH
Q 010004 272 TVFFCGIFMSHYAWH-NMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIE--KWRMSKLSFV-TSL---GVYSALIL 344 (520)
Q Consensus 272 av~~~Gl~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~~--~w~~~~~~~~-~~~---~~~~~~~~ 344 (520)
|+++||++++|+..+ +.+++.+...+++|+.+++++|+++|+++|++++... .|........ ..+ ....+++.
T Consensus 235 Avv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 314 (525)
T TIGR00831 235 AVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNAFVIYP 314 (525)
T ss_pred HHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 999999999998866 6777788888999999999999999999999997532 2321100000 001 11223333
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhcc-CCCCCCcchhhHHHHHHHHHHH
Q 010004 345 MILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTY-SGVTSDPDSATMITATIIIVLF 423 (520)
Q Consensus 345 ~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~-~~~~~~~~~~~i~~~t~~vVl~ 423 (520)
.+...|++.++. ...+...++.+.+.+||++++++|+| |||++++++|+..+.. .+..+.|.++.+...++.+|++
T Consensus 315 ~~~~~r~~~~~~--~~~~~~~~~~~~~~~~r~~~v~~w~G-~RG~vslA~al~~p~~~~~g~~~p~r~~i~~~~~~vVl~ 391 (525)
T TIGR00831 315 VMTYVRFLWTMK--PFSNRFLKKKPMEFGTRWKHVVSWAG-LRGAIPLALALSFPNQLLSGMAFPARYELVFLAAGVILF 391 (525)
T ss_pred HHHHHHHHHHHH--HHHHHHhhcccCCCChhhHHHheecc-chHHHHHHHHHHccccccCCCCCchHHHHHHHHHHHHHH
Confidence 455677655433 33343333344678999999999999 5999999999876532 2224578899999999999999
Q ss_pred HHhhhhhchHHHHHHhCCCCC
Q 010004 424 TTLVFGFLTRPLVKYLLPHPQ 444 (520)
Q Consensus 424 T~~v~g~~~~~l~~~l~~~~~ 444 (520)
|+++||.++||++|+++..++
T Consensus 392 TllvqG~tlp~l~r~l~~~~~ 412 (525)
T TIGR00831 392 SLLVQGISLPIFVKRKFVSEH 412 (525)
T ss_pred HHHHHHhhHHHHHHhcCCCCC
Confidence 999999999999999987643
No 5
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-51 Score=427.38 Aligned_cols=398 Identities=26% Similarity=0.380 Sum_probs=332.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHH
Q 010004 21 SLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQF 100 (520)
Q Consensus 21 ~~~~~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f 100 (520)
+....++.++...+.+.+|. .+|+....++.|++.|+......+ ....+++|.|..+++||++|++|+++|++++
T Consensus 9 ~~~~lil~l~~~~~~~~~~l-~~~~i~~~ll~g~i~g~~~l~~~~----~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l 83 (429)
T COG0025 9 FLLLLILLLGLLVSVLAGRL-LLPEIPLLLLLGLLGGPPGLNLIS----PDLELDPELFLVLFLAILLFAGGLELDLREL 83 (429)
T ss_pred HHHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHhhhhhcccc----ccccCChHHHHHHHHHHHHHHhHhcCCHHHH
Confidence 33334445555556666654 499999999999999975553321 1245688899999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcCCCc-chhhhhhhhhh
Q 010004 101 FHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETP-LLYSLVFGEGV 179 (520)
Q Consensus 101 ~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~~~~-~l~~ll~gEs~ 179 (520)
||+++++..+++++++++++.+|...|+++| ++++..|+++||++|||||+++.+++++.+.| |+.++++|||+
T Consensus 84 ~~~~~~I~~La~~~v~it~~~~g~~~~~l~~-----~i~~~~a~l~gAilspTDPv~v~~i~~~~~vp~ri~~iL~gESl 158 (429)
T COG0025 84 RRVWRSILVLALPLVLITALGIGLLAHWLLP-----GIPLAAAFLLGAILSPTDPVAVSPIFKRVRVPKRIRTILEGESL 158 (429)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----ChhHHHHHHHhHHhcCCCchhhHHHHhcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999976 89999999999999999999999999999988 79999999999
Q ss_pred chhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHH
Q 010004 180 VNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKH-SSVREIALMVLMAYLS 258 (520)
Q Consensus 180 lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~~~~~~~~-~~~~e~~l~l~~~~~~ 258 (520)
+||++++++|....+...++.+. +..+....+++...+|+++|++.|++..++.|+...++. ++..+..+++..++.+
T Consensus 159 ~ND~~giv~f~~~l~~~~~~~~~-~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L~~~~~~ 237 (429)
T COG0025 159 LNDGVGIVLFKVALAALLGTGAF-SLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAFAA 237 (429)
T ss_pred hhhHHHHHHHHHHHHHHhccCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHH
Confidence 99999999999888876542221 145678999999999999999999999999999864221 3456789999999999
Q ss_pred HHHHHhhhcchhHHHHHHHhhhcccccccCcc-chhhhHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhccccchhHHH
Q 010004 259 YILAELLELSGILTVFFCGIFMSHYAWHNMTD-SSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLG 337 (520)
Q Consensus 259 ~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~~~w~~~~~~~~~~~~ 337 (520)
|.+||.+|.||++|++++|++.+++...+.+. +.+.+.+++|+.+++++|.++|+++|++++....+.. .+.
T Consensus 238 ~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~-------~~~ 310 (429)
T COG0025 238 YLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLAL-------GLL 310 (429)
T ss_pred HHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh-------hHH
Confidence 99999999999999999999998555555555 4488889999999999999999999999975442211 144
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhccCCCCCCcchhhHHHHH
Q 010004 338 VYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITAT 417 (520)
Q Consensus 338 ~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~~~~~~~~~~~~i~~~t 417 (520)
..+++..+++++|++++++..+..+ ++.++..++|++++++|+| |||++++++|+..+..... +.++.+...+
T Consensus 311 ~~l~~~~~~~v~R~~~V~~~~~~~~---~~~~~~~~~~~~~~l~w~G-~RG~vsla~al~~p~~~~~---~~~~~i~~i~ 383 (429)
T COG0025 311 GLLVALVAVLLARPLWVFLSLKGSN---LKLRDPLPWRERLFLSWAG-PRGVVSLALALLIPLELPG---PARELILFIV 383 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc---ccccCCCCHHHHHHHhhcc-cccHHHHHHHHHchhhccc---hhhhHHHHHH
Confidence 5566677889999999999887654 1223578999999999999 7999999999986532221 6689999999
Q ss_pred HHHHHHHHhhhhhchHHHHHHhCCCC
Q 010004 418 IIIVLFTTLVFGFLTRPLVKYLLPHP 443 (520)
Q Consensus 418 ~~vVl~T~~v~g~~~~~l~~~l~~~~ 443 (520)
..+|++|+++||.++|++.+++...+
T Consensus 384 ~~vIl~Sl~v~g~t~~~l~~~~~~~~ 409 (429)
T COG0025 384 FLVILFSLLVQGLTLPPLAKKLEVSE 409 (429)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhccCc
Confidence 99999999999999999999988743
No 6
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=100.00 E-value=2.3e-45 Score=395.32 Aligned_cols=396 Identities=17% Similarity=0.183 Sum_probs=303.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhH---HHHHhhHHHHHhhhh
Q 010004 17 VVPISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEEL---FFIYLLPPIIFNAGF 93 (520)
Q Consensus 17 ~~~l~~~~~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~---f~~~~L~~IlF~aG~ 93 (520)
.+.++++.+++++..+++.+++++.++|+++.++++|+++||......+.. . ...+..+ +.++.|++++|.+|+
T Consensus 12 ~l~~~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~--~-~g~~d~i~leIteIvL~I~LFa~Gl 88 (810)
T TIGR00844 12 HVAYSCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPL--S-WGNTDSITLEISRILLCLQVFAVSV 88 (810)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChh--h-cccchHHHHHHHHHHHHHHHHHHHH
Confidence 356667777888888899999977889999999999999999755322111 1 0111112 678999999999999
Q ss_pred cCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhc---CCCc-c
Q 010004 94 QVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQ---DETP-L 169 (520)
Q Consensus 94 ~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~---~~~~-~ 169 (520)
++++++++++|+.+..++++++.++++++++++|++++ +++|..|+++|||++||||+++.++++. .+.| +
T Consensus 89 ~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~-----GL~~~~ALLLGAILAPTDPVLAssV~kg~~~~rvP~r 163 (810)
T TIGR00844 89 ELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVP-----GLNFPASLLMGACITATDPVLAQSVVSGTFAQKVPGH 163 (810)
T ss_pred hCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHhhhcCCcHHHHHHHHhccccccCChH
Confidence 99999999999999999999999999999999998865 8999999999999999999999999983 3566 7
Q ss_pred hhhhhhhhhhchhHHHHHHHHHHHHHHhh-ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--ch
Q 010004 170 LYSLVFGEGVVNDATSVVLFNAVQKIDVR-ELN-GKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHS--SV 245 (520)
Q Consensus 170 l~~ll~gEs~lND~~aivlf~~~~~~~~~-~~~-~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~~~~~~~~~--~~ 245 (520)
++.++.+||++||++|++++.+...+... +.. .....+.+..+++.+++|+++|+++|++.++++++... ++. .+
T Consensus 164 LR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~r-r~~i~~e 242 (810)
T TIGR00844 164 LRNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEG-KNIIDRE 242 (810)
T ss_pred HHhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccchh
Confidence 99999999999999999888766555431 111 11122357889999999999999999999999998853 332 22
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccchhhhhhh
Q 010004 246 REIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKW 325 (520)
Q Consensus 246 ~e~~l~l~~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~~~w 325 (520)
....+.+++++.+|.+++.+|.||++|+|+||++++|..+. ..+.....+++.++.+++.++|+++|+.++.....
T Consensus 243 sfla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~----~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~ 318 (810)
T TIGR00844 243 SFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWF----AQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFN 318 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccch----hhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcc
Confidence 33567788899999999999999999999999999986542 11223456999999999999999999998532110
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhccCC--
Q 010004 326 RMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSG-- 403 (520)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~~~-- 403 (520)
+ . ......+..+++.++++++.|+..++.+..+. +...+|+|+++++|.| |||..++.++........
T Consensus 319 ~-~-~l~~~~w~~ilLaL~LifVrRPpaVlll~~li-------~~~~s~rErlFigWFG-pRGIGSIyyl~~A~~~~~~~ 388 (810)
T TIGR00844 319 N-G-DIGLDVWRLIILSLVVIFLRRIPAVLILKPLI-------PDIKSWREAMFIGHFG-PIGVGAVFAAILSKSQLESH 388 (810)
T ss_pred c-c-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------ccCCCHHHHHHheeec-cccHHHHHHHHHHHHhhhcc
Confidence 0 0 00011233445556677899988887644322 2356999999999999 799999987765432211
Q ss_pred CCC---------------CcchhhHHHHHHHHHHHHHhhhhhchHHH
Q 010004 404 VTS---------------DPDSATMITATIIIVLFTTLVFGFLTRPL 435 (520)
Q Consensus 404 ~~~---------------~~~~~~i~~~t~~vVl~T~~v~g~~~~~l 435 (520)
.+. ....+.+..+|.++|+.|+++||.+++|+
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~lw~iv~f~V~~SIivHG~S~~~l 435 (810)
T TIGR00844 389 LTDEETPLNVTPGKGSKHWQLMACIWPITCFSIVTSVIVHGSSVAVI 435 (810)
T ss_pred cCcccccccccccccchhhhHHHHHHHHHHHHHHHHHhhccccchHH
Confidence 000 01146788999999999999999999987
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=8.4e-45 Score=394.71 Aligned_cols=388 Identities=21% Similarity=0.275 Sum_probs=308.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHH
Q 010004 20 ISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQ 99 (520)
Q Consensus 20 l~~~~~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~ 99 (520)
++.+.++++++.+.+.+.+|. ++|..++++++|+++|+......+..+. + ..+.+.++++++++|++|+++|++.
T Consensus 8 ll~~~~ll~l~~~~~~l~~r~-~~P~ll~~il~GillGp~~lg~i~~~~~---~-~~~~i~~l~L~~iLF~~Gl~~~~~~ 82 (562)
T PRK05326 8 LLIGALLLLLSILASRLSSRL-GIPSLLLFLAIGMLAGEDGLGGIQFDNY---P-LAYLVGNLALAVILFDGGLRTRWSS 82 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHhCccccCCcccCcH---H-HHHHHHHHHHHHHHHcCccCCCHHH
Confidence 334445666666666666664 5999999999999999754321111110 0 1245789999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcCC--Cc-chhhhhhh
Q 010004 100 FFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDE--TP-LLYSLVFG 176 (520)
Q Consensus 100 f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~~--~~-~l~~ll~g 176 (520)
+|+++++++.+++.|+++++++++..+++++ +++|..|+++|+++++|||+++.+++++.+ .+ ++++++++
T Consensus 83 l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~------g~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~ 156 (562)
T PRK05326 83 FRPALGPALSLATLGVLITAGLTGLFAHWLL------GLDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEI 156 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhhh
Confidence 9999999999999999999998888888877 899999999999999999999999999988 66 79999999
Q ss_pred hhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 010004 177 EGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVREIALMVLMAY 256 (520)
Q Consensus 177 Es~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~~~~~~~~~~~~e~~l~l~~~~ 256 (520)
||++||+++++++.++..+...+.... .+..+..++.++.+++++|++.|++..++.|+.+ ++.......+++++++
T Consensus 157 eS~~nD~~ai~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~--~~~~~~~~i~~l~~~l 233 (562)
T PRK05326 157 ESGSNDPMAVFLTITLIELITGGETGL-SWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIA--LPAEGLYPILVLAGAL 233 (562)
T ss_pred hhhcccHHHHHHHHHHHHHHhCCCCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CchhhHHHHHHHHHHH
Confidence 999999999999998877654432221 1234667888889999999999999999888763 2234456788899999
Q ss_pred HHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhccccchhHH
Q 010004 257 LSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSL 336 (520)
Q Consensus 257 ~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~~~w~~~~~~~~~~~ 336 (520)
++|.+||.+|.||++|+|++|++++|.. .+.++..+++++.++.++++++|+++|+.+.....++. .+
T Consensus 234 ~~~~~a~~lg~Sg~la~~iaGl~l~n~~-----~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~-------~~ 301 (562)
T PRK05326 234 LIFALTAALGGSGFLAVYLAGLVLGNRP-----IRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDI-------AL 301 (562)
T ss_pred HHHHHHHHHCCcHHHHHHHHHHHHhCCc-----ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HH
Confidence 9999999999999999999999999653 23455678899999999999999999999854332111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhccCCCCCCcchhhHHHH
Q 010004 337 GVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITA 416 (520)
Q Consensus 337 ~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~~~~~~~~~~~~i~~~ 416 (520)
...++.+++++++|+++++.... ..++++||+.+++|+| +||++++++|..... ...+..+.++.+
T Consensus 302 ~~l~i~~~l~~vaR~l~v~l~~~---------~~~~~~~e~~~i~~~g-~RG~v~i~lA~~~~~----~~~~~~~~~~~~ 367 (562)
T PRK05326 302 PALLLALFLILVARPLAVFLSLL---------PFRFNLREKLFISWVG-LRGAVPIVLATFPMM----AGLPNAQLIFNV 367 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc---------cCCCCHhhhheeeeec-chhHHHHHHHHHHHH----cCCCchhhhhhh
Confidence 12223344678999999886543 2478999999999999 699999999986532 223556788899
Q ss_pred HHHHHHHHHhhhhhchHHHHHHhCCCCCCCC
Q 010004 417 TIIIVLFTTLVFGFLTRPLVKYLLPHPQHAT 447 (520)
Q Consensus 417 t~~vVl~T~~v~g~~~~~l~~~l~~~~~~~~ 447 (520)
++.+|++|+++||.+++|+.|+++..++++.
T Consensus 368 ~~~vvl~S~~i~g~tl~~~a~~l~l~~~~~~ 398 (562)
T PRK05326 368 VFFVVLVSLLLQGTTLPWAARKLGVVVPPEA 398 (562)
T ss_pred hheeeHHHHHHHHhhHHHHHHHcCCCCCCCC
Confidence 9999999999999999999999988765543
No 8
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-43 Score=345.40 Aligned_cols=383 Identities=21% Similarity=0.272 Sum_probs=318.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccCh----hHHHHHhhHHHHHhhhhc
Q 010004 19 PISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDE----ELFFIYLLPPIIFNAGFQ 94 (520)
Q Consensus 19 ~l~~~~~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~----~~f~~~~L~~IlF~aG~~ 94 (520)
.+++...++....++...+..+..+|-.+..+.+|++.|.-.... .++|. ...-+++|.+|+|++|+.
T Consensus 7 ~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~--------I~fdNy~~Ay~vg~lALaiILfdgG~~ 78 (574)
T COG3263 7 LILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGG--------IEFDNYPFAYMVGNLALAIILFDGGFG 78 (574)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCcccc--------cccCccHHHHHHHHHHHHHHhhcCccC
Confidence 344444344444444544444456999999999999999422211 22332 235578899999999999
Q ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcCCCc-chhhh
Q 010004 95 VKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETP-LLYSL 173 (520)
Q Consensus 95 l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~~~~-~l~~l 173 (520)
.+++.||...++.+.+|.+|+++++.++|..++|++ +++|.+++++||++.+||.++|.+++++.+.+ |+.+.
T Consensus 79 T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll------~l~wle~~LiGAiVgSTDAAAVF~lL~~~nl~erv~st 152 (574)
T COG3263 79 TQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLL------NLDWLEGLLIGAIVGSTDAAAVFSLLGGKNLNERVAST 152 (574)
T ss_pred CcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHhhccccHHHHHHHHccCChhhhhhhh
Confidence 999999999999999999999999999999999998 99999999999999999999999999988855 89999
Q ss_pred hhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 010004 174 VFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVREIALMVL 253 (520)
Q Consensus 174 l~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~~~~~~~~~~~~e~~l~l~ 253 (520)
++-||.-||.+|++|.-.+..+..++.++.++...+. |++++..|+++|+..|++..++.+|... +....+.+.++
T Consensus 153 LEiESGtNDPmAvfLTitlieli~~get~l~~~~ll~-f~~q~glG~l~G~~gg~l~~~~Inr~nL---d~GL~pil~la 228 (574)
T COG3263 153 LEIESGSNDPMAVFLTITLIELIAGGETNLSWGFLLG-FLQQFGLGLLLGLGGGKLLLQLINRINL---DSGLYPILALA 228 (574)
T ss_pred EEeecCCCCceeeehhHHHHHHHhccccccCHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHhhcc---ccchhHHHHHH
Confidence 9999999999999999888888766544344444444 9999999999999999999999998842 34566889999
Q ss_pred HHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhccccch
Q 010004 254 MAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFV 333 (520)
Q Consensus 254 ~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~~~w~~~~~~~~ 333 (520)
..++.|.+++.+|.||++|++.||+..+ |.+-+.|+.+.++++-+++++....|..+|+...+.+.|...
T Consensus 229 ~~Ll~fs~t~aiGGsG~LaVYl~Gll~G-----N~~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~ia----- 298 (574)
T COG3263 229 GGLLIFSLTGAIGGSGILAVYLAGLLLG-----NRPIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPIA----- 298 (574)
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHhC-----CCcchhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHhh-----
Confidence 9999999999999999999999999999 555677888999999999999999999999999888877643
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhccCCCCCCcchhhH
Q 010004 334 TSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATM 413 (520)
Q Consensus 334 ~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~~~~~~~~~~~~i 413 (520)
+..+++.+..++++|++.||.... +.+++++|+.+++|.|+ |||+++.+|..+.. . ..+..+.+
T Consensus 299 --vPailL~l~mifvaRP~aV~l~l~---------Pfrf~~~Ek~fvSWvGL-RGAv~IilAifpm~-a---glena~l~ 362 (574)
T COG3263 299 --IPAILLSLWMIFVARPLAVFLGLI---------PFRFNRREKLFVSWVGL-RGAVPIILAIFPMM-A---GLENARLF 362 (574)
T ss_pred --HHHHHHHHHHHHHHhHHHHHHhhc---------ccccCccchheeehhhc-ccchhhhHhhhHHh-c---CCccceEE
Confidence 444555667889999999986331 23689999999999998 99999999987654 2 34677889
Q ss_pred HHHHHHHHHHHHhhhhhchHHHHHHhCCCCCC
Q 010004 414 ITATIIIVLFTTLVFGFLTRPLVKYLLPHPQH 445 (520)
Q Consensus 414 ~~~t~~vVl~T~~v~g~~~~~l~~~l~~~~~~ 445 (520)
+...+.+|++|.++||.+.++..++++...++
T Consensus 363 FNvAF~VVLvSlliQG~tl~~~a~~l~~i~p~ 394 (574)
T COG3263 363 FNVAFFVVLVSLLIQGSTLPWAAKKLKVIVPP 394 (574)
T ss_pred eehhHHHHHHHHHHccCcchHHHHhcccccCC
Confidence 99999999999999999999999999876554
No 9
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-33 Score=270.67 Aligned_cols=388 Identities=16% Similarity=0.174 Sum_probs=290.7
Q ss_pred HHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHHHHhHHH
Q 010004 27 LCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLT 106 (520)
Q Consensus 27 L~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f~~~~~~ 106 (520)
..+-.+.+.++|++..+.|.....+.|+++||......+...-..-+.-..-+..+.|.+..|.++.|++.+++.++|++
T Consensus 22 ~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~wgn~d~it~ei~RvvLcvqvfava~eLPr~Y~l~~w~S 101 (467)
T KOG4505|consen 22 VSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNSWGNKDYITYEISRVVLCVQVFAVAMELPRAYMLEHWRS 101 (467)
T ss_pred HHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCccccCcchhhhhhhhhhHhHHHHHHHHhccHHHHHHHHHH
Confidence 33334578888888889999999999999999877554332211001111236789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcC----CCc-chhhhhhhhhhch
Q 010004 107 IMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQD----ETP-LLYSLVFGEGVVN 181 (520)
Q Consensus 107 il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~----~~~-~l~~ll~gEs~lN 181 (520)
+..+-.+.+++.+++.+..+|.++| ++++..+++++++++||||+...++..+. ++| |+++++.+||+.|
T Consensus 102 i~vlllpVmi~gwlvs~~fvy~l~p-----~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGcN 176 (467)
T KOG4505|consen 102 IFVLLLPVMIIGWLVSFGFVYALIP-----NLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCN 176 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-----cccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCCC
Confidence 9999999999999999888898887 89999999999999999999999999853 367 8999999999999
Q ss_pred hHHHHHHHHHHHHHHhhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH--HHHHHHHHHH
Q 010004 182 DATSVVLFNAVQKIDVRELN-GKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVREI--ALMVLMAYLS 258 (520)
Q Consensus 182 D~~aivlf~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~~~~~~~~~~~~e~--~l~l~~~~~~ 258 (520)
|++|+.++-....+...... ...--+.....++....|+++|.++|++....+|+.+. ++-.+.|. .+-+.+++++
T Consensus 177 DGMaipflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aek-krlid~eSfl~~~vvl~lfc 255 (467)
T KOG4505|consen 177 DGMAIPFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEK-KRLIDRESFLIFYVVLALFC 255 (467)
T ss_pred CCcchhHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHH
Confidence 99999877655555332111 11112356788999999999999999999999999875 44556665 4556778888
Q ss_pred HHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccchhhhh-hhhhccccchhHHH
Q 010004 259 YILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIE-KWRMSKLSFVTSLG 337 (520)
Q Consensus 259 ~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~~-~w~~~~~~~~~~~~ 337 (520)
..+.+.+|.+.++..|++|+++++..|... + ....+..+.++.+++..+|+|.|..++..+ +|. ..+..+|
T Consensus 256 ~gigtiiGvddLl~sFfAGi~Fswd~wFsk--~--t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s----~~gl~vw 327 (467)
T KOG4505|consen 256 MGIGTIIGVDDLLVSFFAGIVFSWDEWFSK--K--TKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLS----VEGLPVW 327 (467)
T ss_pred hhhhheechhHHHHHHHhhhhcchhHHhhh--h--hhhccHHHHHHHHHHHHHHHHhccccchhhcCCc----ccCchHH
Confidence 899999999999999999999998876522 1 222456778888999999999999996433 222 1223344
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhcc---CC-CCCC-----
Q 010004 338 VYSAL-ILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTY---SG-VTSD----- 407 (520)
Q Consensus 338 ~~~~~-~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~---~~-~~~~----- 407 (520)
..+++ +..+++-|.-.|+..-+. -++-.+|||++++||.| |.|..|+..|+..-.. .. ....
T Consensus 328 rlvilsi~iif~RRip~v~l~kp~-------iPdikswkEALFvGhFG-PIGVgAly~allar~~le~~ep~~~i~~~e~ 399 (467)
T KOG4505|consen 328 RLVILSITIIFIRRIPAVYLMKPL-------IPDIKSWKEALFVGHFG-PIGVGALYYALLARKELETLEPEKSIYESET 399 (467)
T ss_pred HHHHHHHHHHHhcccceEEEeccC-------CcchhhHHHHHHhccCC-CccHHHHHHHHHHHhhhccCCcccccCCccc
Confidence 33333 334445555444442222 24567999999999999 9999999888753110 00 0011
Q ss_pred ---cchhhHHHHHHHHHHHHHhhhhhchHHHH
Q 010004 408 ---PDSATMITATIIIVLFTTLVFGFLTRPLV 436 (520)
Q Consensus 408 ---~~~~~i~~~t~~vVl~T~~v~g~~~~~l~ 436 (520)
...+.+...+..+|+.|+++||.+++.+.
T Consensus 400 ~~w~li~~iwpivsf~vlsSIiVHG~sv~~~t 431 (467)
T KOG4505|consen 400 VFWTLIEIIWPIVSFTVLSSIIVHGSSVAMYT 431 (467)
T ss_pred cchhhhhhhhhhhHHHHHHHHHhccchhhHHH
Confidence 12355788888999999999999998653
No 10
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=1.5e-35 Score=308.63 Aligned_cols=371 Identities=25% Similarity=0.345 Sum_probs=77.6
Q ss_pred HHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHHHHhHHHHHH
Q 010004 30 CLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMM 109 (520)
Q Consensus 30 ~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~ 109 (520)
+.+.+.+++|. ++|+.++++++|+++|+......+.. ..+.+.+.++++++++|++|+|+|.+++||++++.+.
T Consensus 8 ~~~~~~l~~r~-~iP~~i~~i~~Gi~lg~~~~~~~~~~-----~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~ 81 (380)
T PF00999_consen 8 AFVAGILFRRL-GIPSIIGYILVGIVLGPSGLGLLEPD-----NPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALA 81 (380)
T ss_dssp ----------------------------------------------S-SSHHHHS--SSHHHHTTGGGG-----------
T ss_pred HHHHHHHHHHh-CCCHHHHHHHheeehhhhhhhhccch-----hhHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 44445555554 49999999999999999766422211 1233558899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcC-CCc-chhhhhhhhhhchhHHHHH
Q 010004 110 FGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQD-ETP-LLYSLVFGEGVVNDATSVV 187 (520)
Q Consensus 110 la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~-~~~-~l~~ll~gEs~lND~~aiv 187 (520)
.++.++++++..++..+++++ ...++++.+++++|+++++|||+.+.++++|. +.+ ++++++.+|+++||.++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~ 158 (380)
T PF00999_consen 82 LGLVGFLLPFILVGFLLSFFL---FILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAII 158 (380)
T ss_dssp -----------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTT
T ss_pred cccceeeehhhHHHHHHHHhh---ccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccchhh
Confidence 999999999888677666421 00189999999999999999999999999664 445 7999999999999999999
Q ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhc
Q 010004 188 LFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLEL 267 (520)
Q Consensus 188 lf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~~~~~~~~~~~~e~~l~l~~~~~~~~~ae~~g~ 267 (520)
++.++...... ....+..+....++.....+.++|...+++..+..|+. ++.++.+..++++.++..|+++|.+|.
T Consensus 159 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~a~~~g~ 234 (380)
T PF00999_consen 159 LLSILISLAQA-SGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRA---SPSSEIFILLVLALILLLYGLAEILGL 234 (380)
T ss_dssp TT------------------------------------------------------------------------------
T ss_pred hhhhhhhhhcc-cccccccchhcchhhhhhhheeeecccchHHHHhhhhc---cccchhhHHHHHHHHhhhccccccccc
Confidence 99988777522 12233444555555555555555555555554444432 245567788999999999999999999
Q ss_pred chhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhccccchhHHHHHHHHHHHHH
Q 010004 268 SGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMIL 347 (520)
Q Consensus 268 Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 347 (520)
|++++++++|+++++...++ +-+++.+++++ .++.+++|+++|+++......+ ....++...+.++.++
T Consensus 235 s~~l~af~~Gl~~~~~~~~~---~~~~~l~~~~~---~~~~~lfF~~iG~~~~~~~l~~-----~~~~~~~~~~~~~~~~ 303 (380)
T PF00999_consen 235 SGILGAFIAGLILSNSPFAE---RLEEKLESFWY---GFFIPLFFVFIGMSLDFSSLFN-----SPSVIILVLLLLIAIL 303 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccceeeeeehccccccccc---hhhhcccchhh---HHHhhHHhhhhccccccccccc-----chhhhhhHHHHHHHHH
Confidence 99999999999999443221 12222333332 8899999999999995321100 1122344455555667
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhccCCCCCCcchhhHHHHHHHHHHHHHhh
Q 010004 348 LGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITATIIIVLFTTLV 427 (520)
Q Consensus 348 v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~~~~~~~~~~~~i~~~t~~vVl~T~~v 427 (520)
++|.++++..++. .+.++|++..+++++.|||+++++++...... ....+.+.+.++.++++|+++
T Consensus 304 ~~k~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~-----~~~~~~~~~~~~~~vl~t~ii 369 (380)
T PF00999_consen 304 LGKFIGVYLASRL---------FGIPWKEALFIGLGMLPRGEVSLALALIALNL-----GIISEQMFTIIIAAVLLTIII 369 (380)
T ss_dssp ----------------------------HHHHTTTTSS--HHHHHHHHHHHHH---------------------------
T ss_pred Hhhhceeehhhhh---------cccccchhHHHHHhhcCccHHHHHHHHHHHhc-----CCCCHHHHHHheeeeeeHHHH
Confidence 8999988875543 37899999999999988999999999876432 122334488888999999999
Q ss_pred hhhchHHHHHH
Q 010004 428 FGFLTRPLVKY 438 (520)
Q Consensus 428 ~g~~~~~l~~~ 438 (520)
+|.+.+|+++|
T Consensus 370 ~~~~~~~l~~~ 380 (380)
T PF00999_consen 370 AGIILSPLLRK 380 (380)
T ss_dssp -----------
T ss_pred HHHHHHHHhcC
Confidence 99999999876
No 11
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=99.96 E-value=5e-26 Score=236.29 Aligned_cols=378 Identities=21% Similarity=0.211 Sum_probs=260.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHH
Q 010004 19 PISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKK 98 (520)
Q Consensus 19 ~l~~~~~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~ 98 (520)
.+..+.+++.++.+.+++++|.+ +|..+++++.|+++||....... ++++ .-+.+.++.+..++|.+|+|.|.+
T Consensus 7 ~l~~~~iiL~~a~i~~~l~~rl~-lp~vlg~llaGiilGp~~~~~~~-~~~~----~i~~laelGvi~LlF~~GLE~~~~ 80 (397)
T COG0475 7 ILLQLLILLLVAVILGPLFKRLG-LPPVLGYLLAGIILGPWGLLLII-ESSE----IIELLAELGVVFLLFLIGLEFDLE 80 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHhcCcccccccC-CchH----HHHHHHHHhHHHHHHHHHHCcCHH
Confidence 34555667788888888888765 99999999999999982221111 1111 112367899999999999999999
Q ss_pred HHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcCC-Cc-chhhhhh
Q 010004 99 QFFHNFLT-IMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDE-TP-LLYSLVF 175 (520)
Q Consensus 99 ~f~~~~~~-il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~~-~~-~l~~ll~ 175 (520)
++||+.++ ....+..+....+.+.....+..+ ++++..++++|++++.||...+.++++|.+ .+ +..+++.
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l 154 (397)
T COG0475 81 RLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGIL------GLSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQLIL 154 (397)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHh------ccChHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 99999999 666666666555433322222124 899999999999999999999999999976 33 7999999
Q ss_pred hhhhchhHHHHHHHHHHHHHHhhccchhh-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCchhHHHHHHH
Q 010004 176 GEGVVNDATSVVLFNAVQKIDVRELNGKA-ALRIFRDFLYLFSTSTILGVTAG-LLTALVLKTLYFGKHSSVREIALMVL 253 (520)
Q Consensus 176 gEs~lND~~aivlf~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~s~~~G~~~G-~~~~~l~~~~~~~~~~~~~e~~l~l~ 253 (520)
+..+++|..+++++.++..+..++..... +...+....... ++-...| ++..++.|+... .+.++.....++.
T Consensus 155 ~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~----~~~l~~g~~l~~~~~r~~~~-~~~~e~~~~~~l~ 229 (397)
T COG0475 155 GALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFL----ALLLLLGRYLLPPLFRRVAK-TESSELFILFVLL 229 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHH
Confidence 99999999999999988887654322211 222222221111 1112223 566666666642 2456677888999
Q ss_pred HHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHH-HHhHHHHHHhccchhhhhhhhhccccc
Q 010004 254 MAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSF-IAETFIFLYVGMDAFDIEKWRMSKLSF 332 (520)
Q Consensus 254 ~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~F~~~G~~i~~~~~w~~~~~~~ 332 (520)
+++...+++|.+|+|.++++|.+|++++...++ +++.++-.+.+.. ++-++||+.+|++++....++
T Consensus 230 i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~------~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~------ 297 (397)
T COG0475 230 LVLGAAYLAELLGLSMILGAFLAGLLLSESEYR------KHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLE------ 297 (397)
T ss_pred HHHHHHHHHHHhChhHHHHHHHHHHHhcccccc------hHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhc------
Confidence 999999999999999999999999999954321 1344555566666 999999999999995433221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhccCCCCCCcchhh
Q 010004 333 VTSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSAT 412 (520)
Q Consensus 333 ~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~~~~~~~~~~~~ 412 (520)
..........+..+.|.++++...+.. +.++|++...++..-+||..+++++-... .....+.
T Consensus 298 --~~~~~l~~~~~~i~~K~~~~~~~~~~~---------g~~~~~~~~~g~~~~~~ge~~~v~~~~~~------~~~i~~~ 360 (397)
T COG0475 298 --NLLLILLLVALAILGKILGAYLAARLL---------GFSKRLALGIGLLLRQGGEFAFVLAGIAL------GSAISEA 360 (397)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHH---------cCcHHHHHHHHhhhhhhhHHHHHHHHhcc------cchhHHH
Confidence 122344555677899999998877654 46777787777766455566655544321 1245556
Q ss_pred HHHHHHHHHHHHHhhhhhchHHHHHHhCCC
Q 010004 413 MITATIIIVLFTTLVFGFLTRPLVKYLLPH 442 (520)
Q Consensus 413 i~~~t~~vVl~T~~v~g~~~~~l~~~l~~~ 442 (520)
.++.+..+.++++.+....++++.++..++
T Consensus 361 ~~~~~v~~smi~t~i~~~~~~~~~~~~~~~ 390 (397)
T COG0475 361 LLTAVVILSMITTPILPLLTPILLKRLLKK 390 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 666666666677766555566666555443
No 12
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=99.96 E-value=3.1e-26 Score=257.10 Aligned_cols=345 Identities=14% Similarity=0.129 Sum_probs=234.7
Q ss_pred HHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccC----hhHHHHHhhHHHHHhhhhcCCHHH
Q 010004 24 VAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFD----EELFFIYLLPPIIFNAGFQVKKKQ 99 (520)
Q Consensus 24 ~~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~----~~~f~~~~L~~IlF~aG~~l~~~~ 99 (520)
.++++++.+++.+++|. ++|..++++++|+++||......+.........+ -+.+.++++.+++|.+|+|+|.+.
T Consensus 49 ~lil~~a~l~~~ll~rl-~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~ 127 (832)
T PLN03159 49 TLVVVTTRLLVFILKPF-RQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISV 127 (832)
T ss_pred HHHHHHHHHHHHHHHhc-CCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 45556666667777665 4999999999999999976643321111111111 234778999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcCCC--cchhhhhhhh
Q 010004 100 FFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDET--PLLYSLVFGE 177 (520)
Q Consensus 100 f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~~~--~~l~~ll~gE 177 (520)
+||+.+..+..++.++++++++.....++ +...+........++++|.++|.|+..++.++++|.+. .++.+++.+.
T Consensus 128 lr~~~k~a~~ia~~~~ilpf~lg~~~~~~-l~~~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elkll~s~~GrlaLsa 206 (832)
T PLN03159 128 IRRTGKKALAIAIAGMALPFCIGLAFSFI-FHQVSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLINTELGRIAMSA 206 (832)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHH-HhhcccccchhHHHHHHHHHHHHhhHHHHHHHHHHcCcccCcHHHHHHHH
Confidence 99999999999999999986654433333 32211111123457889999999999999999999873 4799999999
Q ss_pred hhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 010004 178 GVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGV----TAGLLTALVLKTLYFGKHSSVREIALMVL 253 (520)
Q Consensus 178 s~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~----~~G~~~~~l~~~~~~~~~~~~~e~~l~l~ 253 (520)
+++||.++++++.++..+...+...... ++.++..+++.+ ++-.+..|+.|+....+...+....++++
T Consensus 207 avv~Dl~~~ilLav~~~l~~~~~~~~~~-------l~~~l~~~~f~~~~~~v~r~~~~~~~r~~~~~~~~~e~~v~~il~ 279 (832)
T PLN03159 207 ALVNDMCAWILLALAIALAENDSTSLAS-------LWVLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEFYICLILT 279 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcccchhHHHHH
Confidence 9999999999988776654332211111 111111222222 22334444444432111223344567777
Q ss_pred HHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhccccch
Q 010004 254 MAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFV 333 (520)
Q Consensus 254 ~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~~~w~~~~~~~~ 333 (520)
+++++.+++|.+|++.++++|++|+++.+. +..+...+++-.....++-++||+++|+.+.....+ ..
T Consensus 280 ~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~------~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~------~~ 347 (832)
T PLN03159 280 GVMISGFITDAIGTHSVFGAFVFGLVIPNG------PLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQ------GP 347 (832)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHhhccCCc------chHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhc------Cc
Confidence 788889999999999999999999999831 112222334444456788999999999998432211 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhh
Q 010004 334 TSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQ 398 (520)
Q Consensus 334 ~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~ 398 (520)
..+...++++++.+++|+++++..++.. ++++++++.+|....+||.++++++...
T Consensus 348 ~~~~~~~~liv~a~~gK~~g~~l~a~~~---------g~~~~eal~lG~lm~~kG~~~Lii~~ig 403 (832)
T PLN03159 348 ATWGLLVLVIIMASAGKIMGTIIIAFFY---------TMPFREGITLGFLMNTKGLVEMIVLNVG 403 (832)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CCCHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 1233334445566788988887766543 7899999999999999999999887653
No 13
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=99.96 E-value=3.9e-26 Score=249.89 Aligned_cols=364 Identities=13% Similarity=0.086 Sum_probs=253.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHH
Q 010004 19 PISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKK 98 (520)
Q Consensus 19 ~l~~~~~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~ 98 (520)
.+.-..+++.++.+.+.+++|. ++|.+++++++|+++||......+ +. . +-+.+.++++.+++|.+|+|+|++
T Consensus 6 ~l~~~~~~l~~a~i~~~l~~rl-~lp~vlgyilaGillGP~~lg~i~--~~--~--~i~~laelGvv~LlF~iGLEl~~~ 78 (621)
T PRK03562 6 TLIQALIYLGAAVLIVPIAVRL-GLGSVLGYLIAGCIIGPWGLRLVT--DV--E--SILHFAEFGVVLMLFVIGLELDPQ 78 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHhCcccccCCC--CH--H--HHHHHHHHHHHHHHHHHHhCcCHH
Confidence 3444455666666777777765 499999999999999985443211 00 0 123477899999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcCCC-c-chhhhhhh
Q 010004 99 QFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDET-P-LLYSLVFG 176 (520)
Q Consensus 99 ~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~~~-~-~l~~ll~g 176 (520)
++++..+.++.++...+++++.+++...+ ++ +++|..++++|++++.|+++.++++++|.+. . +..+...+
T Consensus 79 ~l~~~~~~~~~~g~~qv~~~~~~~~~~~~-~~------g~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~ 151 (621)
T PRK03562 79 RLWKLRRSIFGGGALQMVACGGLLGLFCM-LL------GLRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFA 151 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHH
Confidence 99999999999999999998776655444 44 8899999999999999999999999999873 3 68999999
Q ss_pred hhhchhHHHHHHHHHHHHHHhhccc--hhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCchhHHHHHHH
Q 010004 177 EGVVNDATSVVLFNAVQKIDVRELN--GKAALRIFRDFLYLFSTSTILGVTAG-LLTALVLKTLYFGKHSSVREIALMVL 253 (520)
Q Consensus 177 Es~lND~~aivlf~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~s~~~G~~~G-~~~~~l~~~~~~~~~~~~~e~~l~l~ 253 (520)
-.++||..+++++.++..+...+.+ ....+..+. ..++.+++.++.| ++..++.++... ++.++.....++.
T Consensus 152 ~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~l~~~l~~~~~~-~~~~e~~~~~~l~ 226 (621)
T PRK03562 152 ILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSAL----KVAGALALVVLGGRYVTRPALRFVAR-SGLREVFTAVALF 226 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchHHHHHHHH
Confidence 9999999999888876554332111 111111111 1222222233333 345555565532 3345555677788
Q ss_pred HHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhccccch
Q 010004 254 MAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFV 333 (520)
Q Consensus 254 ~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~~~w~~~~~~~~ 333 (520)
+++++.+++|.+|+|..+++|++|+++++.. .++..++..+.+..++.++||+.+|+++.....+
T Consensus 227 lv~~~a~la~~~Gls~~lGAFlAGl~l~~~~-------~~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~-------- 291 (621)
T PRK03562 227 LVFGFGLLMEEVGLSMALGAFLAGVLLASSE-------YRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLL-------- 291 (621)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHhcCCc-------cHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHH--------
Confidence 8899999999999999999999999999532 2333444455556678899999999998432211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhccCCCCCCcchhhH
Q 010004 334 TSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATM 413 (520)
Q Consensus 334 ~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~~~~~~~~~~~~i 413 (520)
..++..+..+++.+++|+++++..++.. +.+++++..+|+..-+||..++.++..... . ....+..
T Consensus 292 ~~~~~il~~~~~~~~~K~~~~~~~~~~~---------g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~-~----~~i~~~~ 357 (621)
T PRK03562 292 ENPLRILILLLGFLAIKIAMLWLLARPL---------GVPRKQRRWFAVLLGQGGEFAFVVFGAAQM-A----NVLEPEW 357 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CCCHhHHHHHHHHHhccccHHHHHHHHHHH-C----CCCCHHH
Confidence 1122223334457789999888766543 788999999999877799999888754321 1 1233455
Q ss_pred HHHHHHHHHHHHhhhhh
Q 010004 414 ITATIIIVLFTTLVFGF 430 (520)
Q Consensus 414 ~~~t~~vVl~T~~v~g~ 430 (520)
......++++|+++.+.
T Consensus 358 ~~~lv~~v~lS~~~tP~ 374 (621)
T PRK03562 358 AKLLTLAVALSMAATPL 374 (621)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555677777777443
No 14
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=99.95 E-value=4.1e-25 Score=240.66 Aligned_cols=369 Identities=15% Similarity=0.103 Sum_probs=242.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHH
Q 010004 21 SLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQF 100 (520)
Q Consensus 21 ~~~~~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f 100 (520)
..+..++.++.+++++++|. ++|..++++++|+++||......+ + ....+.+.++++.+++|.+|+|+|.+++
T Consensus 9 ~~~~~~l~~a~~~~~l~~rl-~~P~ivg~IlaGillGp~~lg~~~--~----~~~~~~la~lGli~llF~~Gle~d~~~l 81 (558)
T PRK10669 9 TTIVGGLVLAFILGMLANRL-RISPLVGYLLAGVLAGPFTPGFVA--D----TKLAPELAELGVILLMFGVGLHFSLKDL 81 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHhhCcccccccc--c----hHHHHHHHHHHHHHHHHHhHhcCCHHHH
Confidence 33455566666677777765 599999999999999985443211 1 0112457889999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcCC--Ccchhhhhhhhh
Q 010004 101 FHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDE--TPLLYSLVFGEG 178 (520)
Q Consensus 101 ~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~~--~~~l~~ll~gEs 178 (520)
+++++.....+..+++++++ .+....+.+ ++++..++++|+++|.|+++.+.++++|.+ ..+..+++.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~ 154 (558)
T PRK10669 82 MAVKSIAIPGAIAQIAVATL-LGMALSAVL------GWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWL 154 (558)
T ss_pred HHHhhHHHHHHHHHHHHHHH-HHHHHHHHh------CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHH
Confidence 99877666666666666554 344444455 799999999999999999999999999987 337899999999
Q ss_pred hchhHHHHHHHHHHHHHHhhcc-chhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 010004 179 VVNDATSVVLFNAVQKIDVREL-NGKAALRIFRDFLYLFSTS----TILGVTAGLLTALVLKTLYFGKHSSVREIALMVL 253 (520)
Q Consensus 179 ~lND~~aivlf~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~s----~~~G~~~G~~~~~l~~~~~~~~~~~~~e~~l~l~ 253 (520)
++||..+++++.++..+..... ...+.........+.+... ++..++..++..++.++... ++.++......+.
T Consensus 155 ~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~e~~~l~~l~ 233 (558)
T PRK10669 155 IVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAA-TGSRELFTLSVLA 233 (558)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchHHHHHHHH
Confidence 9999999888877655432110 0011111111111111111 12233333455555555532 2223333334445
Q ss_pred HHHHH-HHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhccccc
Q 010004 254 MAYLS-YILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSF 332 (520)
Q Consensus 254 ~~~~~-~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~~~w~~~~~~~ 332 (520)
++++. +..+|.+|+|.++++|++|+++++.. ..++..+-...+..++.++||+.+|+++.....|+.
T Consensus 234 ~~l~~a~~~~~~lGls~~lGAflaGl~l~~~~-------~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~l~~~----- 301 (558)
T PRK10669 234 LALGIAFGAVELFDVSFALGAFFAGMVLNESE-------LSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMILIQQ----- 301 (558)
T ss_pred HHHHHHHHHHHHcCccHHHHHHHHHHHHhCCh-------hHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHHHHHH-----
Confidence 45544 34579999999999999999998421 111122112223456889999999999854433321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhccCCCCCCcchhh
Q 010004 333 VTSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSAT 412 (520)
Q Consensus 333 ~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~~~~~~~~~~~~ 412 (520)
.......+++.+++|+++++..+... +.++|++..+|.+..+||..++.++..... .....+.
T Consensus 302 ---~~~~~~~~~~~~v~K~~~~~~~~~~~---------g~~~~~a~~~gl~l~~~Gef~lii~~~~~~-----~gii~~~ 364 (558)
T PRK10669 302 ---PLAVLATLAIIVFGKSLAAFFLVRLF---------GHSRRTALTIAASLAQIGEFAFILAGLGMA-----LNLLPQA 364 (558)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHh---------CCChhhHHHHHHHHhcccchHHHHHHHHHh-----CCCCCHH
Confidence 12223344557789998888766543 678999999999988899999998775432 2234556
Q ss_pred HHHHHHHHHHHHHhhhhhchH
Q 010004 413 MITATIIIVLFTTLVFGFLTR 433 (520)
Q Consensus 413 i~~~t~~vVl~T~~v~g~~~~ 433 (520)
.+...+.++++|+++.+....
T Consensus 365 ~~~~~v~~~~~t~~~~P~l~~ 385 (558)
T PRK10669 365 GQNLVLAGAILSIMLNPVLFT 385 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666677777888888544443
No 15
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=99.95 E-value=6.8e-26 Score=225.28 Aligned_cols=268 Identities=18% Similarity=0.210 Sum_probs=206.3
Q ss_pred HHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHHHHhHHHHH
Q 010004 29 LCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIM 108 (520)
Q Consensus 29 ~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f~~~~~~il 108 (520)
++.+.+.+.+|. ++|+.+++++.|+++||......+ +.+ .-+.+.++.+.+++|.+|+|+|.+++||+++.+.
T Consensus 3 ~a~~~~~l~~~l-~lP~~v~~il~GillGp~~lg~i~--~~~----~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~ 75 (273)
T TIGR00932 3 AAVLAVPLSRRL-GIPSVLGYLLAGVLIGPSGLGLIS--NVE----GVNHLAEFGVILLMFLIGLELDLERLWKLRKAAF 75 (273)
T ss_pred HHHHHHHHHHHh-CCCHHHHHHHHHHHhCcccccCCC--ChH----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 445567777765 599999999999999985432211 110 1234678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcCCC-c-chhhhhhhhhhchhHHHH
Q 010004 109 MFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDET-P-LLYSLVFGEGVVNDATSV 186 (520)
Q Consensus 109 ~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~~~-~-~l~~ll~gEs~lND~~ai 186 (520)
..+..+++++++.++..+.+++ ++++..++++|+++++|||.++.++++|.+. + +..+++.+++++||.+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i 149 (273)
T TIGR00932 76 GVGVLQVLVPGVLLGLLLGHLL------GLALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVV 149 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHH
Confidence 9999999999777777666666 8999999999999999999999999999873 3 799999999999999999
Q ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhh
Q 010004 187 VLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLE 266 (520)
Q Consensus 187 vlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~~~~~~~~~~~~e~~l~l~~~~~~~~~ae~~g 266 (520)
+++.+......+... +.......+.......++.+++.++...++.|+... ++..+.+...++.+++..+.++|.+|
T Consensus 150 ~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~la~~~g 226 (273)
T TIGR00932 150 PLLALLPLLATSAST--EHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAE-LRPSELFTAGSLLLMFGSAYFADLLG 226 (273)
T ss_pred HHHHHHHHHhcCCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHHHHhC
Confidence 999888766442211 111222233344445556666677777777777653 23345667888889999999999999
Q ss_pred cchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccch
Q 010004 267 LSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDA 319 (520)
Q Consensus 267 ~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i 319 (520)
.|+++|+|++|+++++... +++..+..+.+..++.+++|+++|+++
T Consensus 227 ~s~~lgaf~aGl~~~~~~~-------~~~l~~~l~~~~~~f~plFF~~~G~~~ 272 (273)
T TIGR00932 227 LSMALGAFLAGVVLSESEY-------RHKLESDLEPIGGVLLPLFFISVGMSV 272 (273)
T ss_pred CcHHHHHHHHHHHHcCCch-------HHHHHHHHHhHHHHHHHHHHHHhCccC
Confidence 9999999999999996421 223445555566899999999999986
No 16
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=99.95 E-value=1.1e-24 Score=238.12 Aligned_cols=357 Identities=13% Similarity=0.085 Sum_probs=245.2
Q ss_pred HHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHHHHh
Q 010004 24 VAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHN 103 (520)
Q Consensus 24 ~~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f~~~ 103 (520)
++++..+.+.+.+++|. ++|..++++++|+++||......+ +.. +-+.+.++++.+++|..|+|+|.+++++.
T Consensus 11 ~~~l~~a~~~~~l~~rl-~~p~ilg~ilaGillGP~~lg~i~--~~~----~i~~laelGvv~LLF~iGLel~~~~l~~~ 83 (601)
T PRK03659 11 VLFLFAAVVAVPLAQRL-GIGAVLGYLLAGIAIGPWGLGFIS--DVD----EILHFSELGVVFLMFIIGLELNPSKLWQL 83 (601)
T ss_pred HHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHhccccccCCC--cHH----HHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 34445555556666664 599999999999999986443211 000 11347789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcCCCc--chhhhhhhhhhch
Q 010004 104 FLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETP--LLYSLVFGEGVVN 181 (520)
Q Consensus 104 ~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~~~~--~l~~ll~gEs~lN 181 (520)
.+.++.++..++++++++++...++ + +++|..++++|..++.||++.+.++++|.+.. +.+++..+..++|
T Consensus 84 ~~~~~~~g~~~v~~t~~~~~~~~~~-~------g~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll~~ 156 (601)
T PRK03659 84 RRSIFGVGAAQVLLSAAVLAGLLML-T------DFSWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQ 156 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-H------ccCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHH
Confidence 9999999999999988776665543 4 78999999999999999999999999998743 5888999999999
Q ss_pred hHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 010004 182 DATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAG-LLTALVLKTLYFGKHSSVREIALMVLMAYLSYI 260 (520)
Q Consensus 182 D~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G-~~~~~l~~~~~~~~~~~~~e~~l~l~~~~~~~~ 260 (520)
|..+++++.++..+.........+.. .... +..+++.++.| ++..++.++... .+.++.....++++++++.+
T Consensus 157 Di~~i~ll~l~~~l~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~l~~vl~~a~ 230 (601)
T PRK03659 157 DLAVIPALALVPLLAGSADEHFDWMK-IGMK----VLAFAGMLIGGRYLLRPLFRFIAA-SGVREVFTAAALLLVLGSAL 230 (601)
T ss_pred HHHHHHHHHHHHHHhcCCCcchHHHH-HHHH----HHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHH
Confidence 99888887766544332211111111 1111 11111112223 344555555432 23445556667777888889
Q ss_pred HHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhccccchhHHHHHH
Q 010004 261 LAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLGVYS 340 (520)
Q Consensus 261 ~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~~~w~~~~~~~~~~~~~~~ 340 (520)
++|.+|+|.++++|++|+++++.. .++..++-.+....++.++||+.+|+.+.....++ .++..+
T Consensus 231 l~~~~Gls~~LGAFlaGl~l~~s~-------~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~--------~~~~il 295 (601)
T PRK03659 231 FMDALGLSMALGTFIAGVLLAESE-------YRHELEIAIEPFKGLLLGLFFISVGMALNLGVLYT--------HLLWVL 295 (601)
T ss_pred HHHHhCccHHHHHHHHHHHhcCCc-------hHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH--------hHHHHH
Confidence 999999999999999999999532 22333334444456788999999999985322111 122333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhccCCCCCCcchhhHHHHHHHH
Q 010004 341 ALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITATIII 420 (520)
Q Consensus 341 ~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~~~~~~~~~~~~i~~~t~~v 420 (520)
.+.++.+++|+++++..+... +.+++++..++...-+||..++.++..... .+ -..+...+..+.+
T Consensus 296 ~~~~~~l~~K~~~~~~~~~~~---------g~~~~~al~~g~~L~~~Gef~~vl~~~a~~-~g----~i~~~~~~~lv~~ 361 (601)
T PRK03659 296 ISVVVLVAVKGLVLYLLARLY---------GLRSSERMQFAGVLSQGGEFAFVLFSAASS-QR----LLQGDQMALLLVV 361 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---------CCCHHHHHHHHHHHhccccHHHHHHHHHHh-CC----CCCHHHHHHHHHH
Confidence 444567789999988766543 788999988887766899999988765432 11 2233444555566
Q ss_pred HHHHHhhhh
Q 010004 421 VLFTTLVFG 429 (520)
Q Consensus 421 Vl~T~~v~g 429 (520)
+++|+++.+
T Consensus 362 v~ls~~~tP 370 (601)
T PRK03659 362 VTLSMMTTP 370 (601)
T ss_pred HHHHHHHHH
Confidence 677776633
No 17
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.65 E-value=1.3e-13 Score=131.70 Aligned_cols=367 Identities=17% Similarity=0.179 Sum_probs=223.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHH
Q 010004 20 ISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQ 99 (520)
Q Consensus 20 l~~~~~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~ 99 (520)
+...++.++++.++|.+..|.| +|+.+++++.|++.||....+ ..+ ..+.+ ...++.+..+||-.|++.+.|+
T Consensus 8 i~tiv~gl~lAFl~G~lA~rlr-lsPLVGyL~AGv~~gpftpGF----vad-~~La~-~LAelGViLLmFgvGLhfslkd 80 (408)
T COG4651 8 ITTIVGGLVLAFLLGALANRLR-LSPLVGYLLAGVLAGPFTPGF----VAD-QTLAP-ELAELGVILLMFGVGLHFSLKD 80 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHhcCCCCCCc----ccc-hhHHH-HHHHhhHHHHHHhcchheeHHH
Confidence 4445567788888899888876 999999999999999753322 111 12222 3678899999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH---HHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcCC--Ccchhhhh
Q 010004 100 FFHNFLTIMMFGVIGVFISVSI---ITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDE--TPLLYSLV 174 (520)
Q Consensus 100 f~~~~~~il~la~~g~~i~~~~---i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~~--~~~l~~ll 174 (520)
+..... .|++|.+....+ .+.+.-+++ +|++...+.||-++|-.+.|+.+.-++|.+ ..+-.++-
T Consensus 81 LLavk~----iAipgAl~qia~at~lg~gL~~~l------gws~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iA 150 (408)
T COG4651 81 LLAVKA----IAIPGALAQIALATLLGMGLSSLL------GWSFGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIA 150 (408)
T ss_pred HhhHHH----HhcchHHHHHHHHHHHHhHHHHHc------CCCcccceeeeehhhhHHHHHHHHHHHHhccccccCceEE
Confidence 876543 344554443332 233444444 899999999999999999999999999876 23567777
Q ss_pred hhhhhchhHHHHHHHHHHHHH---Hh-hccchhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCchhHHH
Q 010004 175 FGEGVVNDATSVVLFNAVQKI---DV-RELNGKAALRIFRDFLYLFSTSTILGVTAGL-LTALVLKTLYFGKHSSVREIA 249 (520)
Q Consensus 175 ~gEs~lND~~aivlf~~~~~~---~~-~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~-~~~~l~~~~~~~~~~~~~e~~ 249 (520)
.|=-++.|...++-....-++ .. ++....+....++-.+.....=+.++.++|. +..|+..+... ..+++....
T Consensus 151 iGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~-tGsrElf~L 229 (408)
T COG4651 151 IGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAA-TGSRELFTL 229 (408)
T ss_pred EeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHH
Confidence 777888896665443333222 22 1222223333344444455555677777775 66666666643 223333344
Q ss_pred HHHHHHH-HHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhc
Q 010004 250 LMVLMAY-LSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMS 328 (520)
Q Consensus 250 l~l~~~~-~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~~~w~~~ 328 (520)
..+.+++ .+|..+|.+|.|--+++|++|++++.. +.+++..++.. .+...+..+||+.+|+...+...-+
T Consensus 230 ~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~es------elshraa~~sl-pLrdaFaVlFFvsVGmlf~P~~l~~-- 300 (408)
T COG4651 230 AVLAIALGVAFGAAELFGVSFALGAFFAGMVLAES------ELSHRAAEDSL-PLRDAFAVLFFVSVGMLFDPMILIQ-- 300 (408)
T ss_pred HHHHHHHHHhhccceeeccchhHHHHHHHHHhcch------hhhHHHHHhcc-CHHHHHHHHHHHHhhhhcCcHHhhc--
Confidence 4444444 356677899999999999999999832 22222222211 2334566789999999986543111
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhccCCCCCCc
Q 010004 329 KLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDP 408 (520)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~~~~~~~~ 408 (520)
.-...+..+..++.+|-+..|...... +.+.+.++.++-+---.|.-++.++-.-.. .+.-+..
T Consensus 301 ------~pl~vlatllii~~gKs~aaf~ivr~F---------g~~~~TaLtis~SLaqigEFsfIlaGLgi~-l~llp~~ 364 (408)
T COG4651 301 ------QPLAVLATLLIILFGKSVAAFFIVRAF---------GHPVRTALTISASLAQIGEFSFILAGLGIK-LNLLPEA 364 (408)
T ss_pred ------chHHHHHHHHHHHhhhHHHHHHHHHHh---------CCcchHHHHHHHHHHhhhhHHHHHHHHhhh-hccCcHH
Confidence 112234445566778877666544332 445555666555432246666665533211 1112233
Q ss_pred chhhHHHHHHHHHHHHHhhhhhchH
Q 010004 409 DSATMITATIIIVLFTTLVFGFLTR 433 (520)
Q Consensus 409 ~~~~i~~~t~~vVl~T~~v~g~~~~ 433 (520)
.++.+.. .-+.|++.++....
T Consensus 365 gr~Lvla----gailsIl~nPllf~ 385 (408)
T COG4651 365 GRDLVLA----GAILSILLNPLLFA 385 (408)
T ss_pred HHHHHHH----HHHHHHHHhHHHHH
Confidence 4555544 44566666554444
No 18
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=99.57 E-value=1.5e-13 Score=153.00 Aligned_cols=389 Identities=17% Similarity=0.154 Sum_probs=245.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccCh----hHHHHHhhHHHHHhhhhc
Q 010004 19 PISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDE----ELFFIYLLPPIIFNAGFQ 94 (520)
Q Consensus 19 ~l~~~~~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~----~~f~~~~L~~IlF~aG~~ 94 (520)
.+.+++.++.+..-+.|++.|+.++|..+..++.|+++||..+...+.........+. +.+.+++.-..+|.-|++
T Consensus 23 l~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg~~~f~Fl~gl~ 102 (769)
T KOG1650|consen 23 LLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLGFLFFLFLMGLE 102 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555566766676679999999999999999877544332222222121 236677788899999999
Q ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccCCC----CCcHHHHHHhhhhcccccHHHHHHhhhcCC--C
Q 010004 95 VKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFP-KLGFM----GLSIQDYLALGTIFSSTDTVCTLQILNQDE--T 167 (520)
Q Consensus 95 l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~-~~~~~----~~~~~~all~GailsaTdpv~v~~il~~~~--~ 167 (520)
+|.+.++|+.+....+|+.++++++.. +.+....+. ..... ......-...+...|.|+-..+..++.|++ .
T Consensus 103 ~d~~~i~~~~kka~~I~~~~~~~p~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~eLkll~ 181 (769)
T KOG1650|consen 103 IDLRVIRRTGKKAIVIAIASVVLPFGL-GFGLAFLLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILAELKLLN 181 (769)
T ss_pred hhHHHhhccCceeEEEEEEEeehhhHh-hhhhhhhccccccccccccccccHHHHHHHHHhhcchhHHHHHHHHHhhchh
Confidence 999999999999888888888887544 333332221 11100 111224567778889999999999999987 4
Q ss_pred cchhhhhhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Q 010004 168 PLLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVRE 247 (520)
Q Consensus 168 ~~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~~~~~~~~~~~~e 247 (520)
.+++.+...++++||..++.++.....+...... +.......+...+...+..=.++=.+..|+.|+....+...+..
T Consensus 182 se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~v~~p~~~wi~kr~pe~~~~~~~~ 259 (769)
T KOG1650|consen 182 SELGRLALSAAVVNDVAGWILLALALAFSSELKL--SPLRSVWDLVLVIGFVLFLFFVVRPLMKWIIKRTPEGKPVSDAY 259 (769)
T ss_pred chhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCC--cchHHHHHHHHHHHHHHheeeehhhhHHHHhhcCCCCCccccce
Confidence 5799999999999999999888776666543321 11111111111111111111112223444444432222233345
Q ss_pred HHHHHHHHHHHHHHHHhhh-cchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccchhhhhhhh
Q 010004 248 IALMVLMAYLSYILAELLE-LSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWR 326 (520)
Q Consensus 248 ~~l~l~~~~~~~~~ae~~g-~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~~~w~ 326 (520)
....++..+.+....+.++ .++++++|..|+++-|.. +-...-.+++-.....++.++.|...|....... +
T Consensus 260 ~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~-----p~g~~L~ekle~~~~~~llPl~~~~~G~k~di~~-i- 332 (769)
T KOG1650|consen 260 ICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGP-----PLGSALIEKLEDLVSGLLLPLYFAISGLKTDISR-I- 332 (769)
T ss_pred ehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCC-----chhHHHHHHHHHHHHHHHHHHHHHhhccceeHHH-H-
Confidence 6778888888888899887 788999999999998543 2222333444445566889999999999984321 1
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhccCCCCC
Q 010004 327 MSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTS 406 (520)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~~~~~~ 406 (520)
+.+......+....+.+++++...+.. .|++++|.+.++..+.-||-+.+..--.... .
T Consensus 333 -------~~~~~~~~~i~~~~~~K~l~t~~~sl~---------~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~-----~ 391 (769)
T KOG1650|consen 333 -------NKWGALIRTILIFGAVKLLSTLGTSLY---------CKLPLRDSLALGLLMSTKGLVELIVLNTGLD-----R 391 (769)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHH---------hcCchhHHHHHHHHHHhhhHHHHHHHHHHhh-----c
Confidence 113333444556678888888776653 2899999999999887788888765333211 1
Q ss_pred CcchhhHHHHHHHHHHHHHhhhhhchHHHHHHhCCC
Q 010004 407 DPDSATMITATIIIVLFTTLVFGFLTRPLVKYLLPH 442 (520)
Q Consensus 407 ~~~~~~i~~~t~~vVl~T~~v~g~~~~~l~~~l~~~ 442 (520)
...++..++..+..+++++.+ ++|++..+.+.
T Consensus 392 ~~~~~~~f~~~vl~alv~t~I----~~~~l~~~y~p 423 (769)
T KOG1650|consen 392 KILSDEGFTVMVLMALVSTFI----TPPLLMFLYDP 423 (769)
T ss_pred CCcccchHHHHHHHHHHHHhh----HHHHHHHhcch
Confidence 122333444333344444444 78888877643
No 19
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.05 E-value=4.5e-07 Score=93.64 Aligned_cols=272 Identities=14% Similarity=0.150 Sum_probs=160.8
Q ss_pred HHHHHhhHHHHHhhhhcCCHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhc
Q 010004 78 LFFIYLLPPIIFNAGFQVKKK-------QFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIF 150 (520)
Q Consensus 78 ~f~~~~L~~IlF~aG~~l~~~-------~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~Gail 150 (520)
+.-..++.+--|..|+|+|.+ ..||..-+ ..-|+.|+++++++ |+.++ ..-..+.-=-++-
T Consensus 65 wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP-~~aAlGGm~vPali-----y~~~n------~~~~~~~~GW~Ip 132 (423)
T PRK14853 65 WAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALP-VAAALGGMIVPALI-----YVAVN------LAGGGALRGWAIP 132 (423)
T ss_pred HHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHH-HHHHHHhHHHHHHH-----HHHHh------CCchhhhhhhhhh
Confidence 345667777789999999653 33443333 34466777776433 44442 1112222223567
Q ss_pred ccccHHHHHHhhhcCC--Cc-chhhhhhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010004 151 SSTDTVCTLQILNQDE--TP-LLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAG 227 (520)
Q Consensus 151 saTdpv~v~~il~~~~--~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G 227 (520)
++||-+.++.++...+ .| +++..+.+-+++||..++++..++. .++.+.. .... .+.+
T Consensus 133 ~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY---t~~i~~~---~L~~-------------a~~~ 193 (423)
T PRK14853 133 TATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY---TSELNLE---ALLL-------------ALVP 193 (423)
T ss_pred hhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc---CCCCCHH---HHHH-------------HHHH
Confidence 8999999999998764 46 7999999999999999999877664 2222221 1100 0011
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhcccccccC-c----cchhhhHHHHHH-
Q 010004 228 LLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNM-T----DSSRITTRHTFA- 301 (520)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~~e~~l~l~~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~-~----~~~~~~~~~~~~- 301 (520)
....+++++. +... ....+.+.....+..+..|.+..+|.++.|+++-.+...+. . ++-.++.++..+
T Consensus 194 ~~~l~~l~~~----~V~~--~~~Y~ilg~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p 267 (423)
T PRK14853 194 LALFWLLVQK----RVRK--WWLLLPLGVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRP 267 (423)
T ss_pred HHHHHHHHHc----CCch--hhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHH
Confidence 1122233322 2222 22223335577888889999999999999999964221110 0 011233444444
Q ss_pred HHHHHHhHHH-HHHhccchhhhhhh-hhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CCCCCCCccchh
Q 010004 302 MMSFIAETFI-FLYVGMDAFDIEKW-RMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNS-HRSPSISFNHQV 378 (520)
Q Consensus 302 ~~~~l~~~~~-F~~~G~~i~~~~~w-~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~ 378 (520)
..+++.-++| |...|+++.....+ +.. ... ....+.+..+++|.++++..+++.-+.+. +.+++.+|++..
T Consensus 268 ~V~~~ILPLFAFANaGV~l~~~~~~~~~~----~~p--v~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~ 341 (423)
T PRK14853 268 LSAGVAVPVFAFFSAGVAIGGLSGLGAAL----TDP--IVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVF 341 (423)
T ss_pred HHHHHHHHHHHHHHhhheecCchhHHHHh----hch--HHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHH
Confidence 4457888888 99999998542211 100 001 22344556789999999999988765442 245678888765
Q ss_pred hheecCCchhHHHHHHhh
Q 010004 379 VIWWAGLMRGAVSIALAF 396 (520)
Q Consensus 379 ~i~~~GlpRGav~~aLa~ 396 (520)
-++. -+.+.+-+++
T Consensus 342 gv~~----L~GIGFTmSl 355 (423)
T PRK14853 342 GVAL----LAGIGFTVSL 355 (423)
T ss_pred HHHH----HHHHHHHHHH
Confidence 5553 3444444443
No 20
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=98.36 E-value=3.3e-05 Score=78.56 Aligned_cols=255 Identities=15% Similarity=0.210 Sum_probs=152.3
Q ss_pred HHHHhhHHHHHhhhhcCCHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC---CCCCcHHHHHHhhh
Q 010004 79 FFIYLLPPIIFNAGFQVKKKQF-------FHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLG---FMGLSIQDYLALGT 148 (520)
Q Consensus 79 f~~~~L~~IlF~aG~~l~~~~f-------~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~---~~~~~~~~all~Ga 148 (520)
.-..++.+--|..|+|+|.+-. ||..-+ ..-|+.|+++++.+ |..++.-+ ..+| +
T Consensus 56 iNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP-~~aA~GGm~vPa~i-----y~~~n~~~~~~~~GW---------~ 120 (373)
T TIGR00773 56 INDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFP-VIAAIGGMIAPALI-----YLAFNANDPITREGW---------A 120 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHH-HHHHHhchHHHHHH-----HhheecCCCcccCcc---------c
Confidence 4456677777899999986643 222222 23355666665432 44443210 0122 4
Q ss_pred hcccccHHHHHHhhhcC--CCc-chhhhhhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 010004 149 IFSSTDTVCTLQILNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVT 225 (520)
Q Consensus 149 ilsaTdpv~v~~il~~~--~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~ 225 (520)
+=.+||-+-++.++.=. +.| .++..+..-++.||..+|++-.++.+ ++.+. .. +...+
T Consensus 121 IP~ATDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt---~~i~~---~~-------------L~~a~ 181 (373)
T TIGR00773 121 IPAATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFYT---NDLSM---AA-------------LLVAA 181 (373)
T ss_pred cccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeecC---CCCCH---HH-------------HHHHH
Confidence 55789999988887643 466 69999999999999999987665532 22221 11 11122
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHH-
Q 010004 226 AGLLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMS- 304 (520)
Q Consensus 226 ~G~~~~~l~~~~~~~~~~~~~e~~l~l~~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~- 304 (520)
.+...-+.++|.+ .+.. ....+....+.+.+ ...|.+..+|.+..|+++.++...+ ++-.++.++..+...
T Consensus 182 ~~~~~l~~~~~~~----v~~~-~~y~~lgvllW~~~-~~sGVHatiaGvllGl~iP~~~~~~--~~pl~rleh~L~p~v~ 253 (373)
T TIGR00773 182 VAIAVLAVLNRCG----VRRL-GPYMLVGVILWFAV-LKSGVHATLAGVIIGFFIPLKGKKG--ESPLKRLEHVLHPWVA 253 (373)
T ss_pred HHHHHHHHHHHcC----Cchh-hHHHHHHHHHHHHH-HHcCCcHHHHHHHHeeeecccccCC--CCHHHHHHHHHHHHHH
Confidence 2223334445442 1111 22222333333333 7999999999999999998753222 222345566655444
Q ss_pred HHHhHHH-HHHhccchhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CCCCCCCccchhhhee
Q 010004 305 FIAETFI-FLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNS-HRSPSISFNHQVVIWW 382 (520)
Q Consensus 305 ~l~~~~~-F~~~G~~i~~~~~w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ 382 (520)
++.-++| |...|+++.... .+. .... ....+.+..+++|.++++..+++.-+.+. +.+++.+|++..-++.
T Consensus 254 ~lilPlFAFanAGv~l~~~~-~~~-----~~~~-v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~ 326 (373)
T TIGR00773 254 YLILPLFAFANAGVSLQGVS-LNG-----LTSM-LPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGV 326 (373)
T ss_pred HHHHHHHHHHhcCeeeecCc-chh-----hcCh-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 6777888 999999994322 110 0011 13344556789999999999998766654 3456788888765553
No 21
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=97.48 E-value=0.033 Score=57.10 Aligned_cols=268 Identities=13% Similarity=0.173 Sum_probs=148.7
Q ss_pred HHHHHhhHHHHHhhhhcCCHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC---CCCCcHHHHHHhh
Q 010004 78 LFFIYLLPPIIFNAGFQVKKKQF-------FHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLG---FMGLSIQDYLALG 147 (520)
Q Consensus 78 ~f~~~~L~~IlF~aG~~l~~~~f-------~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~---~~~~~~~~all~G 147 (520)
+.-..++.+--|..|+|+|.+-. ||..-+ ..-|+.|+++++.+ |+.+..-+ ..+|
T Consensus 62 wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP-i~AAlGGmivPAlI-----y~~~n~g~~~~~~GW--------- 126 (389)
T PRK09560 62 WINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILP-AIAAVGGMVVPALI-----YAAFNYNNPETLRGW--------- 126 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHH-HHHHHhchHHHHHH-----HheeecCCCcccCcc---------
Confidence 34566777788999999986643 222222 23355666665432 44443210 0122
Q ss_pred hhcccccHHHHHHhhhcC--CCc-chhhhhhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 010004 148 TIFSSTDTVCTLQILNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGV 224 (520)
Q Consensus 148 ailsaTdpv~v~~il~~~--~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~ 224 (520)
++=.+||-+-++.++.=. +.| .++.-+..=++.||..+|++-.++.+ ++.+. .+ . ...
T Consensus 127 gIPmATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt---~~i~~---~~-------L------~~a 187 (389)
T PRK09560 127 AIPAATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT---SDLSL---PA-------L------ALA 187 (389)
T ss_pred ccccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC---CCCCH---HH-------H------HHH
Confidence 355789999998888743 466 69999999999999999987665432 22221 11 1 111
Q ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHH
Q 010004 225 TAGLLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMS 304 (520)
Q Consensus 225 ~~G~~~~~l~~~~~~~~~~~~~e~~l~l~~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (520)
+.+...-++++|.+. ++ ...-+......++.--.-|.+.-+|-+..|+++-.+......++--++.+|..+...
T Consensus 188 ~~~~~~l~~ln~~~v-~~-----~~~Y~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v 261 (389)
T PRK09560 188 AIAIAVLFLLNRLGV-TK-----LTPYLIVGAILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWV 261 (389)
T ss_pred HHHHHHHHHHHHcCC-cc-----chHHHHHHHHHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhh
Confidence 112223344454421 11 222233444555555667888999999999999874322211111234555555444
Q ss_pred HHHhHHHHHHh--ccchhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CCCCCCCccchhhhe
Q 010004 305 FIAETFIFLYV--GMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNS-HRSPSISFNHQVVIW 381 (520)
Q Consensus 305 ~l~~~~~F~~~--G~~i~~~~~w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~ 381 (520)
...-.-+|.+. |+.+.... .... ...+ ...+.+..+++|.++++..+++.-+.+. +.+++.+|++..-++
T Consensus 262 ~~~IlPlFAlaNAGV~l~~~~-~~~~----~~pv--~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~ 334 (389)
T PRK09560 262 AFAILPLFAFANAGVSLAGIS-LSSL----TSPV--PLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVS 334 (389)
T ss_pred hhhhHHHHHhhcCCeeecCCc-HHhc----cCcH--HHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 43333334544 55552211 1000 0112 2233456789999999999998766553 345678888765554
Q ss_pred ecCCchhHHHHHHhh
Q 010004 382 WAGLMRGAVSIALAF 396 (520)
Q Consensus 382 ~~GlpRGav~~aLa~ 396 (520)
. -+.+.+-+++
T Consensus 335 ~----L~GIGFTmSL 345 (389)
T PRK09560 335 V----LCGIGFTMSL 345 (389)
T ss_pred H----HHHHHHHHHH
Confidence 3 3555554443
No 22
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.27 E-value=0.25 Score=50.56 Aligned_cols=81 Identities=19% Similarity=0.223 Sum_probs=48.8
Q ss_pred HHHHHHHhh------cCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHH-hhhhcCCHHHHHHh
Q 010004 31 LIVGHLLEE------NRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIF-NAGFQVKKKQFFHN 103 (520)
Q Consensus 31 ~~~~~~~~~------~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF-~aG~~l~~~~f~~~ 103 (520)
.++|+.++| +..+||++..=++..++++..+.....+ .++|.++ -+. +..+.| ..|++.+.+.++|-
T Consensus 18 lllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~~~----~~fd~~l-~~~-fmliFFttiglsa~~~~lkkg 91 (404)
T COG0786 18 LLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGGVS----LNFDTSL-QDV-FMLIFFATIGLSASFKLLKKG 91 (404)
T ss_pred HHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcceEE----EeCCccc-ccH-HHHHHHHHhccccchhHHHhc
Confidence 346666654 2358999887777778887666432211 2233211 111 112223 56899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 010004 104 FLTIMMFGVIGVFI 117 (520)
Q Consensus 104 ~~~il~la~~g~~i 117 (520)
++....+...+..+
T Consensus 92 Gk~l~if~~~a~~l 105 (404)
T COG0786 92 GKKLAIFLATAAGL 105 (404)
T ss_pred ChhHHHHHHHHHHH
Confidence 99877766555544
No 23
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=97.18 E-value=0.094 Score=53.78 Aligned_cols=267 Identities=15% Similarity=0.198 Sum_probs=147.2
Q ss_pred HHHHhhHHHHHhhhhcCCHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhh-hhc
Q 010004 79 FFIYLLPPIIFNAGFQVKKKQF-------FHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALG-TIF 150 (520)
Q Consensus 79 f~~~~L~~IlF~aG~~l~~~~f-------~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~G-ail 150 (520)
.-..++.+--|..|+|+|.+-. ||..-+ ..-|+.|+++++++ |+.++. +.+. ..=| ++=
T Consensus 63 iNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP-i~AAlGGmivPAli-----y~~~n~-~~~~------~~~GWaIP 129 (388)
T PRK09561 63 INDGLMAVFFLLIGLEVKRELLEGSLASRRQAALP-VIAAIGGMLVPALI-----YLLFNY-ADPV------TREGWAIP 129 (388)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHH-HHHHHhchHHHHHH-----Hhheec-CCCc------ccCccccc
Confidence 4456777778899999986643 222222 23355666665432 444432 1100 0011 455
Q ss_pred ccccHHHHHHhhhcC--CCc-chhhhhhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010004 151 SSTDTVCTLQILNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAG 227 (520)
Q Consensus 151 saTdpv~v~~il~~~--~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G 227 (520)
.+||-+-++.++.=. +.| .++..+..=++.||..+|++-.++.+ ++.+. . +... ....
T Consensus 130 ~ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~i~~---~-------~L~~------a~~~ 190 (388)
T PRK09561 130 AATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT---SDLSM---V-------SLGV------AAVA 190 (388)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---CCccH---H-------HHHH------HHHH
Confidence 789999998888543 466 69999999999999999987665532 22221 1 1111 1111
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHH
Q 010004 228 LLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIA 307 (520)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~~e~~l~l~~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 307 (520)
...-+.+++.+. ++ ...-+......++.--.-|.+.-+|-+..|+++-.+..+. ++--++.+|..+......
T Consensus 191 ~~~l~~ln~~~v-~~-----~~~Y~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~--~~pl~rleh~L~p~v~~~ 262 (388)
T PRK09561 191 IAVLAVLNLCGV-RR-----TSVYILVGVVLWVAVLKSGVHATLAGVIVGFFIPLKEKHG--RSPAERLEHGLHPWVAFL 262 (388)
T ss_pred HHHHHHHHHcCC-cc-----chHHHHHHHHHHHHHHHccccHHHHHHHHHhhccccCCCC--CCHHHHHHHHhhhhhhhe
Confidence 222334444321 11 2222334445566666678899999999999998754322 111234444444433333
Q ss_pred hHHHHHHh--ccchhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CCCCCCCccchhhheecC
Q 010004 308 ETFIFLYV--GMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNS-HRSPSISFNHQVVIWWAG 384 (520)
Q Consensus 308 ~~~~F~~~--G~~i~~~~~w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~G 384 (520)
-.-+|.+. |+.+.... .+.. ...+ ...+.+..+++|.++++..+++.-+++. +.+++.+|++..-++.
T Consensus 263 IlPlFAfaNAGV~l~~~~-~~~~----~~pv--~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~-- 333 (388)
T PRK09561 263 ILPLFAFANAGVSLQGVT-LDGL----TSPL--PLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGV-- 333 (388)
T ss_pred eHHHHHhhcCCeeeccCc-HHhh----cCcH--HHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH--
Confidence 33334444 55553211 1110 0112 1233446779999999999998766653 3456788888755553
Q ss_pred CchhHHHHHHhh
Q 010004 385 LMRGAVSIALAF 396 (520)
Q Consensus 385 lpRGav~~aLa~ 396 (520)
-+.+.+-+++
T Consensus 334 --L~GIGFTmSL 343 (388)
T PRK09561 334 --LCGIGFTMSI 343 (388)
T ss_pred --HHHHHHHHHH
Confidence 3445554443
No 24
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=97.09 E-value=0.12 Score=53.76 Aligned_cols=264 Identities=15% Similarity=0.152 Sum_probs=144.9
Q ss_pred HHHHhhHHHHHhhhhcCCHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhh-hhc
Q 010004 79 FFIYLLPPIIFNAGFQVKKKQF-------FHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALG-TIF 150 (520)
Q Consensus 79 f~~~~L~~IlF~aG~~l~~~~f-------~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~G-ail 150 (520)
.-..++.+--|..|+|+|.+-. ||..-+ ..-|+.|+++++.+ |+.+.. +. +- .=| +|=
T Consensus 67 INDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lP-iiAAlGGmivPAlI-----y~~~n~-~~---~~----~~GWgIP 132 (423)
T PRK14855 67 VNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALA-VVAALGGMLVPAAL-----YTALNA-GG---PG----ASGWGVP 132 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHH-HHHHHhchHHHHHH-----Hheeec-CC---Cc----cCccccc
Confidence 4456777778899999986643 222222 23355666665432 444432 11 00 112 456
Q ss_pred ccccHHHHHHhhhcC--CCc-chhhhhhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010004 151 SSTDTVCTLQILNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAG 227 (520)
Q Consensus 151 saTdpv~v~~il~~~--~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G 227 (520)
.+||.+-++.++.=. +.| .++..+..-+++||..+|++-.++.+ ++.+. . +. ...+.+
T Consensus 133 mATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~i~~---~-------~L------~~a~~~ 193 (423)
T PRK14855 133 MATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT---SGLNL---L-------AL------LLAALT 193 (423)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC---CCCCH---H-------HH------HHHHHH
Confidence 899999999888654 467 69999999999999999887665432 22221 1 11 111112
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCc------------------
Q 010004 228 LLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMT------------------ 289 (520)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~~e~~l~l~~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~------------------ 289 (520)
...-+++++.+. + ....-+......++.--.-|.+.-+|-+..|+++-.+..++..
T Consensus 194 ~~~l~~ln~~~v-~-----~~~~Y~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (423)
T PRK14855 194 WALALLAGRLGV-T-----SLKIYAVLGALLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVG 267 (423)
T ss_pred HHHHHHHHHcCC-c-----cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhh
Confidence 222344444321 1 1222333444555566667888899999999999764111100
Q ss_pred ------c------ch-hhhHHHHHHHHHHHHhHHHHHHh--ccchhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHH
Q 010004 290 ------D------SS-RITTRHTFAMMSFIAETFIFLYV--GMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFV 354 (520)
Q Consensus 290 ------~------~~-~~~~~~~~~~~~~l~~~~~F~~~--G~~i~~~~~w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v 354 (520)
+ ++ -++.+|..+......-.-+|.+. |+.+.... ...+ ...+.+..+++|.+++
T Consensus 268 ~~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~---------~~pv--~lGI~~GLvvGK~lGI 336 (423)
T PRK14855 268 ARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG---------LGTV--SLGVFLGLLLGKPLGV 336 (423)
T ss_pred HHHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC---------CCcH--HHHHHHHHHhcchHHH
Confidence 0 00 12344444433333223334444 55552210 0112 2233456789999999
Q ss_pred HHHHHHhhhhcc-CCCCCCCccchhhheecCCchhHHHHHHhh
Q 010004 355 FPLSLLSNYMNS-HRSPSISFNHQVVIWWAGLMRGAVSIALAF 396 (520)
Q Consensus 355 ~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~GlpRGav~~aLa~ 396 (520)
+..+++.-+.+. +.+++.+|++..-++. -+.+.+-+++
T Consensus 337 ~~~s~lavkl~~a~lP~g~~w~~l~gv~~----LaGIGFTmSL 375 (423)
T PRK14855 337 VGGAWLAVRLGLASLPRRVNWLHMLGAGL----LAGIGFTMSL 375 (423)
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHH----HHHHHHHHHH
Confidence 999998766553 3456788887655543 3444454443
No 25
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=97.06 E-value=0.14 Score=53.53 Aligned_cols=308 Identities=15% Similarity=0.179 Sum_probs=161.2
Q ss_pred HHHHhhHHHHHhhhhcCCHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhh-hhc
Q 010004 79 FFIYLLPPIIFNAGFQVKKKQF-------FHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALG-TIF 150 (520)
Q Consensus 79 f~~~~L~~IlF~aG~~l~~~~f-------~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~G-ail 150 (520)
.-..++.+--|..|+|++.+-. ||..-+ ..-|+.|+++++++ |+.+..-+- . .=| +|=
T Consensus 72 INDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lP-i~AAlGGmivPAlI-----Y~~~n~~~~-------~-~~GWgIP 137 (438)
T PRK14856 72 IDDVLMALFFLMIGLEIKRELLFGELSSFKKASFP-VIAALGGMIAPGLI-----YFFLNADTP-------S-QHGFGIP 137 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHH-HHHHHhccHHHHHH-----HhheecCCC-------c-cCccccc
Confidence 4466777778899999986643 222222 23355666665432 444432110 0 112 456
Q ss_pred ccccHHHHHHhhhcC--CCc-chhhhhhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010004 151 SSTDTVCTLQILNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAG 227 (520)
Q Consensus 151 saTdpv~v~~il~~~--~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G 227 (520)
.+||.+-++.++.=. +.| .++..+..=++.||..+|++-.++.+ ++.+. . + ++..+.+
T Consensus 138 mATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~i~~---~-------~------L~~a~~~ 198 (438)
T PRK14856 138 MATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT---TNLKF---A-------W------LLGALGV 198 (438)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---CCCcH---H-------H------HHHHHHH
Confidence 889999999888543 466 79999999999999999987665532 22221 1 1 1111222
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCc------------------
Q 010004 228 LLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMT------------------ 289 (520)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~~e~~l~l~~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~------------------ 289 (520)
....+++++.+. ++ ...-+......++.--.-|.+.-+|.+..|+++-.+.+.+..
T Consensus 199 ~~~l~~ln~~~v-~~-----~~~Y~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (438)
T PRK14856 199 VLVLAVLNRLNV-RS-----LIPYLLLGVLLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGA 272 (438)
T ss_pred HHHHHHHHHcCC-cc-----ccHHHHHHHHHHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhcccccc
Confidence 233344454421 11 222223444555555667888889999999998654322100
Q ss_pred ----cc---------------h-hhhHHHHHHHHHHHHhHHHHHH--hccchhhhhhhhhccccchhHHHHHHHHHHHHH
Q 010004 290 ----DS---------------S-RITTRHTFAMMSFIAETFIFLY--VGMDAFDIEKWRMSKLSFVTSLGVYSALILMIL 347 (520)
Q Consensus 290 ----~~---------------~-~~~~~~~~~~~~~l~~~~~F~~--~G~~i~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 347 (520)
++ + -++.+|.........-.-+|.+ .|+.+.. ..... ...+ ...+.+..+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~-~~~~~-----~~pv--~lGI~~GLv 344 (438)
T PRK14856 273 LLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDS-SINLE-----VDKV--LLGVILGLC 344 (438)
T ss_pred ccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceecc-chhhc-----cCcH--HHHHHHHHH
Confidence 00 0 1233444443333233333444 4555521 10000 0112 223344678
Q ss_pred HHHHHHHHHHHHHhhhhcc-CCCCCCCccchhhheecCCchhHHHHHHhhhhhccCCCCCCcc-hhhHHHHHHHHHHHHH
Q 010004 348 LGRAAFVFPLSLLSNYMNS-HRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPD-SATMITATIIIVLFTT 425 (520)
Q Consensus 348 v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~~~~~~~~~-~~~i~~~t~~vVl~T~ 425 (520)
++|.++++..+++.-+++. +.+++.+|++..-++. -+.+.+-+++..-.. ..+. .+......=.-|+...
T Consensus 345 vGK~lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~----LaGIGFTmSLFIa~L----AF~~~~~~~~~~aKigIL~gS 416 (438)
T PRK14856 345 LGKPLGIFLITFISEKLKITARPKGISWWHILGAGL----LAGIGFTMSMFISNL----AFTSEHKDAMEVAKIAILLGS 416 (438)
T ss_pred hcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH----HHHHHHHHHHHHHHH----hcCCCchhHHHHHHHHHHHHH
Confidence 9999999999998776653 3456788887655543 345555444432110 0111 0112222333445555
Q ss_pred hhhhhchHHHHHHhCC
Q 010004 426 LVFGFLTRPLVKYLLP 441 (520)
Q Consensus 426 ~v~g~~~~~l~~~l~~ 441 (520)
++.++..--++++...
T Consensus 417 ~lsai~G~~~L~~~~~ 432 (438)
T PRK14856 417 LISGIIGALYLFALDK 432 (438)
T ss_pred HHHHHHHHHHHHHcch
Confidence 5555555555654433
No 26
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=96.96 E-value=0.3 Score=49.51 Aligned_cols=152 Identities=12% Similarity=0.082 Sum_probs=71.2
Q ss_pred ccChhHHHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHhhhccCCCCCcHHHHHHhhhh
Q 010004 73 RFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSI---ITVGSWWLFPKLGFMGLSIQDYLALGTI 149 (520)
Q Consensus 73 ~~~~~~f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~---i~~~~~~l~~~~~~~~~~~~~all~Gai 149 (520)
..+.|....+++..|.|..|+++|.+++++..+..-... .+...+.++ .+.....+++.+. +-++..++++=++
T Consensus 26 ~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l-~~~~~~fvl~Pll~~~~~~l~~~~~--~~~l~~Gl~~~~~ 102 (313)
T PF13593_consen 26 VIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHL-FVQAFNFVLFPLLGFGLSRLFPAFL--PPELALGLLILAC 102 (313)
T ss_pred ccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHH-HHHHHHHHHHHHHHHHHHHHhhccC--CHHHHHHHHHHhh
Confidence 345556777889999999999999999987665532211 112222222 2333333332111 2233444444444
Q ss_pred cccc-cHHHHHHhhhcCCCcchhhhhhhhhhchhHHHHHHHHHHHHHHh-hccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010004 150 FSST-DTVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAVQKIDV-RELNGKAALRIFRDFLYLFSTSTILGVTAG 227 (520)
Q Consensus 150 lsaT-dpv~v~~il~~~~~~~l~~ll~gEs~lND~~aivlf~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G 227 (520)
+-+| +..++..-. -.++.. ..+ .++.++...++++.=....+.. ++....+....+.++....+.=.++|-+.-
T Consensus 103 lPtTv~S~v~~T~~-AgGN~a--~Al-~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~~~L~~~vllP~~~Gq~~r 178 (313)
T PF13593_consen 103 LPTTVSSSVVLTRL-AGGNVA--LAL-FNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVLIKLVLTVLLPLVLGQLLR 178 (313)
T ss_pred CCchhhHHHHHHHH-cCCCHH--HHH-HHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333 222111111 112221 111 2455666677766554444333 222223444455555555555555555444
Q ss_pred HHHH
Q 010004 228 LLTA 231 (520)
Q Consensus 228 ~~~~ 231 (520)
....
T Consensus 179 ~~~~ 182 (313)
T PF13593_consen 179 RWVP 182 (313)
T ss_pred HHHH
Confidence 3333
No 27
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=96.56 E-value=0.017 Score=59.05 Aligned_cols=261 Identities=16% Similarity=0.199 Sum_probs=129.5
Q ss_pred HHHHHhhHHHHHhhhhcCCHHHHH----HhHHH--HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhh-hhc
Q 010004 78 LFFIYLLPPIIFNAGFQVKKKQFF----HNFLT--IMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALG-TIF 150 (520)
Q Consensus 78 ~f~~~~L~~IlF~aG~~l~~~~f~----~~~~~--il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~G-ail 150 (520)
++-+.++.+--|..|+|+|.+-.. +..+. -..-|+.|+++++. .|..++. +-+ + -.=| ++=
T Consensus 58 wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPal-----Iyl~~n~----~~~--~-~~~GW~IP 125 (378)
T PF06965_consen 58 WINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPAL-----IYLAFNA----GGP--E-AAHGWAIP 125 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHH-----HHGGG------SST--T-HHHHTSSS
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHH-----HHheeec----CCC--C-cCceEEec
Confidence 455677888889999999866432 11111 12335555555532 2444432 111 1 1112 567
Q ss_pred ccccHHHHHHhhhcC--CCc-chhhhhhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010004 151 SSTDTVCTLQILNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAG 227 (520)
Q Consensus 151 saTdpv~v~~il~~~--~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G 227 (520)
.+||.+-++.++.=. +.| .++..+..=+++||..+++.-.++.+ ++.+. .+. ...+.+
T Consensus 126 ~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt---~~i~~----------~~L------~~a~~~ 186 (378)
T PF06965_consen 126 MATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT---DGISL----------LWL------LLAAAA 186 (378)
T ss_dssp S---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS--------H----------HHH------HHHHHH
T ss_pred ccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC---CCCCH----------HHH------HHHHHH
Confidence 899999999998644 466 69999999999999999988776542 22221 111 111112
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhcccccccC--ccchhhhHHHHHHHHHH
Q 010004 228 LLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNM--TDSSRITTRHTFAMMSF 305 (520)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~~e~~l~l~~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 305 (520)
...-+.++|.+ ... ....+......++.-..-|.+.-+|-+..|+++-.+.+.+. .++.-++.+|..+....
T Consensus 187 ~~~l~~l~r~~----v~~--~~~Y~~~G~~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~ 260 (378)
T PF06965_consen 187 LLLLFVLNRLG----VRS--LWPYLLLGILLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVA 260 (378)
T ss_dssp HHHHHHHHHTT---------THHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC----Cce--ehHHHHHHHHHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhh
Confidence 22234444432 111 12223334445555567788899999999999988765532 11222344455444433
Q ss_pred -HHhH-HHHHHhccchhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CCCCCCCccchhhhee
Q 010004 306 -IAET-FIFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNS-HRSPSISFNHQVVIWW 382 (520)
Q Consensus 306 -l~~~-~~F~~~G~~i~~~~~w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ 382 (520)
+.-+ |-|.=.|+.+.... .+.. . -.....+.+..+++|.++++..+++..+.+. +.+++.+|++..-++.
T Consensus 261 ~~IlPlFAlaNAGV~l~~~~-~~~~----~--~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~ 333 (378)
T PF06965_consen 261 FVILPLFALANAGVSLSGSS-LGDL----T--SPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGL 333 (378)
T ss_dssp HTHHHHHHHHHS----SSS----TH----H--HHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHH
T ss_pred hhhHHhHhheeCceEEecCc-hHhh----h--ChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 3222 33444455553221 1100 0 0111123345779999999988888765543 2456788887765554
No 28
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=96.53 E-value=1.3 Score=46.06 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=38.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHH
Q 010004 41 RWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGV 115 (520)
Q Consensus 41 ~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~ 115 (520)
..+|+++..=+++.++......... ...++|.++ ...++.+..=..|+..+.+.++|-++.+..+....+
T Consensus 32 ~~IPasvIgGli~~il~~~l~~~~~----~~~~f~~~l-~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~ 101 (368)
T PF03616_consen 32 LFIPASVIGGLIFAILPLILGGFGG----ISISFDTSL-QDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAI 101 (368)
T ss_pred ccCCchHHHHHHHHHHHHHHHhcCc----eEEEechhH-HHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHH
Confidence 4589887665556666554443221 113455432 222222222255778888888888877666554443
No 29
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=96.46 E-value=0.67 Score=47.53 Aligned_cols=268 Identities=14% Similarity=0.186 Sum_probs=144.0
Q ss_pred HHHHHhhHHHHHhhhhcCCHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhh-hh
Q 010004 78 LFFIYLLPPIIFNAGFQVKKKQF-------FHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALG-TI 149 (520)
Q Consensus 78 ~f~~~~L~~IlF~aG~~l~~~~f-------~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~G-ai 149 (520)
+.-+.++.+--|..|+|+|.+-. ||..-+ ..-|+.|+++++.+ |..++. + ....=| ++
T Consensus 59 WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP-~~AAlGGmivPAlI-----y~~~n~------~--~~~~~GW~I 124 (383)
T PRK14854 59 WINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITP-AIAAFAGLAMPSLI-----YLSINH------D--IKVINGWAI 124 (383)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHH-HHHHHhchHHHHHH-----HHhhcc------C--CcccCcccc
Confidence 34556677777899999986633 222222 23355666666433 444421 1 011112 45
Q ss_pred cccccHHHHHHhhhcC--CCc-chhhhhhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 010004 150 FSSTDTVCTLQILNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTA 226 (520)
Q Consensus 150 lsaTdpv~v~~il~~~--~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~ 226 (520)
=.+||-+-++.++.=. +.| .++..+..-+++||..+|++-.++.+ ++.+. .+.......
T Consensus 125 P~ATDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFYt---~~i~~----------~~L~~A~~~----- 186 (383)
T PRK14854 125 PSATDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFYT---KSLSL----------LSLSLGTLF----- 186 (383)
T ss_pred ccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC---CCccH----------HHHHHHHHH-----
Confidence 5789999988887643 466 69999999999999999987665432 22221 111111111
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHH
Q 010004 227 GLLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFI 306 (520)
Q Consensus 227 G~~~~~l~~~~~~~~~~~~~e~~l~l~~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l 306 (520)
...-+.++|.+ +.+. ...-+......++.--.-|.+.-+|-+..|+++-....+. ++--++.+|..+.....
T Consensus 187 -~~~l~~~nr~~---~v~~--~~~Y~~~G~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~--~~pl~rleh~L~p~v~~ 258 (383)
T PRK14854 187 -ILAMIICNRIF---KINR--SSVYVVLGFFAWFCTIKSGVHATLAGFTTALCIPFRENDK--DSPANFMEDSLHPWIIY 258 (383)
T ss_pred -HHHHHHHHHhc---CCce--ehHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCC--CCHHHHHHHHhhchHHH
Confidence 11122334331 1111 1222334455555566678889999999999998743221 11123344444433333
Q ss_pred HhHHHHHHh--ccchhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CCCCCCCccchhhheec
Q 010004 307 AETFIFLYV--GMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNS-HRSPSISFNHQVVIWWA 383 (520)
Q Consensus 307 ~~~~~F~~~--G~~i~~~~~w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~ 383 (520)
.-.-+|.+. |+.+.... .+.. ...+ ...+.+..+++|.++++..+++.-+.+. +.+++.+|++..-++.
T Consensus 259 ~IlPlFA~aNAGV~l~~~~-~~~~----~~pv--~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~- 330 (383)
T PRK14854 259 FILPVFAFANAGISFSGIS-FSIL----FEPI--TLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISL- 330 (383)
T ss_pred hhHHHHHhhcCCeeeccCc-HHhh----cCcH--HHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-
Confidence 333334444 55553221 1110 0112 2233446789999999999988765432 2456788887655553
Q ss_pred CCchhHHHHHHhh
Q 010004 384 GLMRGAVSIALAF 396 (520)
Q Consensus 384 GlpRGav~~aLa~ 396 (520)
-+.+.+-+++
T Consensus 331 ---L~GIGFTmSL 340 (383)
T PRK14854 331 ---LCGIGFTMSL 340 (383)
T ss_pred ---HHHHHHHHHH
Confidence 3444444443
No 30
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=96.11 E-value=1.3 Score=44.11 Aligned_cols=271 Identities=16% Similarity=0.190 Sum_probs=138.9
Q ss_pred HhhHHHHHhhhhcCCHHHHHH---hHHHH---HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccH
Q 010004 82 YLLPPIIFNAGFQVKKKQFFH---NFLTI---MMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDT 155 (520)
Q Consensus 82 ~~L~~IlF~aG~~l~~~~f~~---~~~~i---l~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdp 155 (520)
-+..+--+..|+|+|++-+.- |++.. ..-|..|++.++. .|++++. +-+...===++-++||.
T Consensus 69 gLMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAl-----iy~~~n~------~~p~~~~GWaIP~ATDi 137 (390)
T COG3004 69 GLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPAL-----IYLALNA------GDPATLEGWAIPMATDI 137 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhh-----Hhheeec------CChhhhcCcCcccHHHH
Confidence 344555567899998776643 33332 1223344444432 2444421 11111111256789999
Q ss_pred HHHHHhhhcC--CCc-chhhhhhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010004 156 VCTLQILNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTAL 232 (520)
Q Consensus 156 v~v~~il~~~--~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~ 232 (520)
+-++.++.-. ++| .++.-+..-+++||.-+++.-.++.. ++.+... ... ...+...-.
T Consensus 138 AFAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt---~~Ls~~a----------l~~------a~~~i~vL~ 198 (390)
T COG3004 138 AFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT---TDLSMAA----------LGI------AALAIAVLA 198 (390)
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc---CCccHHH----------HHH------HHHHHHHHH
Confidence 9999998754 577 68888999999999998887766532 2222110 001 111112223
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHH-HHHHHhH-H
Q 010004 233 VLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAM-MSFIAET-F 310 (520)
Q Consensus 233 l~~~~~~~~~~~~~e~~l~l~~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~-~ 310 (520)
.+++.+. +. ...-+.+....+..-..-|.+.-+|-++.|+++--.+.+..+ .-++.+|.... ..++.-+ +
T Consensus 199 ~lN~~~v----~~--l~~Y~~~gviLW~~vlkSGVHATLAGVi~~f~IPl~~k~~~s--pl~~leh~L~pwvaf~IlPlF 270 (390)
T COG3004 199 VLNRLGV----RR--LSPYLLVGVILWIAVLKSGVHATLAGVILAFFIPLKTKEGES--PLERLEHALHPWVAFFILPLF 270 (390)
T ss_pred HHHHhCc----hh--hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHeeeeccCCCCCC--cHHHHHHHhhhhHHHHHHHHH
Confidence 3444421 11 122223333333333344666667777777776543322212 22334444433 3343333 4
Q ss_pred HHHHhccchhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CCCCCCCccchhhhee-cCCchh
Q 010004 311 IFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNS-HRSPSISFNHQVVIWW-AGLMRG 388 (520)
Q Consensus 311 ~F~~~G~~i~~~~~w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~~-~GlpRG 388 (520)
-|.=.|.++...+.-... ..+. ..+..-.+++|.++++..+++.-+++- +.+++.+|++..-++. +|. -=
T Consensus 271 aFaNAGvsl~g~~~~~l~-----s~l~--lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGI-GF 342 (390)
T COG3004 271 AFANAGVSLQGVSLSGLT-----SPLT--LGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGI-GF 342 (390)
T ss_pred HHccCCcccccccccccc-----cchH--HHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhh-hH
Confidence 455567666433211110 1111 223345679999999999988655442 3466788887655443 342 23
Q ss_pred HHHHHHhhhh
Q 010004 389 AVSIALAFKQ 398 (520)
Q Consensus 389 av~~aLa~~~ 398 (520)
.+++-++...
T Consensus 343 TMSlFI~~LA 352 (390)
T COG3004 343 TMSLFIASLA 352 (390)
T ss_pred HHHHHHHHHh
Confidence 4555555443
No 31
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.69 E-value=2.7 Score=42.33 Aligned_cols=114 Identities=17% Similarity=0.207 Sum_probs=68.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHH
Q 010004 41 RWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVS 120 (520)
Q Consensus 41 ~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~ 120 (520)
..++.....+++|+++|......++. -+.-.++.. ...|..=+-.-|.+++..++.+.....+...+..+..+..
T Consensus 24 ~~l~~~~~AillG~~i~n~~~~~~~~-~~~Gi~~~~----k~~Lr~gIVLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~ 98 (305)
T PF03601_consen 24 PGLGALLIAILLGMLIGNLFFGLPAR-FKPGIKFSS----KKLLRLGIVLLGFRLSFSDILALGWKGLLIIIIVVILTFL 98 (305)
T ss_pred cCccHHHHHHHHHHHHhhhccCCcHH-HHhHHHHHH----HHHHHHHHHHHCccccHHHHHHhCccHHHHHHHHHHHHHH
Confidence 45788888999999998511111110 000122222 2444444566799999999999988777777666666554
Q ss_pred HHHHHHHHhhhccCCCCCcHHHHHHhh---hhcccccHHHHHHhhhcC
Q 010004 121 IITVGSWWLFPKLGFMGLSIQDYLALG---TIFSSTDTVCTLQILNQD 165 (520)
Q Consensus 121 ~i~~~~~~l~~~~~~~~~~~~~all~G---ailsaTdpv~v~~il~~~ 165 (520)
...+...-.+ +++...+.++| +|+.++.-+++.++.|..
T Consensus 99 ~~~~lg~r~~------~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~ 140 (305)
T PF03601_consen 99 LTYWLGRRLF------GLDRKLAILIAAGTSICGASAIAATAPVIKAK 140 (305)
T ss_pred HHHHHHHHHh------CCCHHHHHHHHhhcccchHHHHHHHcccccCC
Confidence 4433431233 77888888877 344455555555666543
No 32
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.89 E-value=0.88 Score=50.49 Aligned_cols=72 Identities=15% Similarity=0.269 Sum_probs=52.2
Q ss_pred HHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHH
Q 010004 79 FFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVC 157 (520)
Q Consensus 79 f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~ 157 (520)
|..+++|+.-...|+++|.+.+.+++..++.+.+..++.-.+.+...+. .+ ++++.+++.+|..+++.....
T Consensus 266 f~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~-~~------g~~~~~al~~g~~L~~~Gef~ 337 (601)
T PRK03659 266 FKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLAR-LY------GLRSSERMQFAGVLSQGGEFA 337 (601)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-Hh------CCCHHHHHHHHHHHhccccHH
Confidence 6678888888899999999999998877665554444444444333333 33 899999999999888776544
No 33
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.66 E-value=1 Score=50.13 Aligned_cols=71 Identities=13% Similarity=0.167 Sum_probs=50.3
Q ss_pred HHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHH
Q 010004 79 FFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTV 156 (520)
Q Consensus 79 f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv 156 (520)
|..+++|+--...|+++|...+.+++..++.+.+..++.-.+.+...+. ++ ++++.+++.+|..++.-...
T Consensus 269 f~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~-~~------g~~~~~a~~~gl~L~~~Gef 339 (621)
T PRK03562 269 FKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLAR-PL------GVPRKQRRWFAVLLGQGGEF 339 (621)
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh------CCCHhHHHHHHHHHhccccH
Confidence 6667787777788999999999888777665544444444444333333 33 89999999999988866554
No 34
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.38 E-value=1.6 Score=47.97 Aligned_cols=72 Identities=14% Similarity=0.080 Sum_probs=46.8
Q ss_pred HHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHH
Q 010004 79 FFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVC 157 (520)
Q Consensus 79 f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~ 157 (520)
+...++|+--...|+++|...+.+++..++.+.+...+.-.+....... ++ +.++.+++..|..+++.....
T Consensus 277 ~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~~~~-~~------g~~~~~a~~~gl~l~~~Gef~ 348 (558)
T PRK10669 277 LRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFFLVR-LF------GHSRRTALTIAASLAQIGEFA 348 (558)
T ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh------CCChhhHHHHHHHHhcccchH
Confidence 4466777777789999999999887655544333333333222222222 23 789999999999988765543
No 35
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=93.90 E-value=1.8 Score=40.22 Aligned_cols=145 Identities=14% Similarity=0.075 Sum_probs=61.8
Q ss_pred HhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHh
Q 010004 82 YLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQI 161 (520)
Q Consensus 82 ~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~i 161 (520)
+.+..++|..|.+++.+++++..+.--. -+.|.+.+.++.-..++.+... -++....+..|.++.+..|....+.
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~-l~~~l~~~~~i~Plla~~l~~~----~~~~~~~~~~Gl~l~~~~P~~~~s~ 76 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKL-LLIGLLAQFLIMPLLAFGLAWL----LLPLSPALALGLLLVAACPGGPASN 76 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHH-HHHHHHHHHHHHHHHHHHHH-H----HTT--HHHHHHHHHHHHS-B-THHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHHHH----HhcCCHHHHHHHHHHhcCCcHHHHH
Confidence 4567889999999999999977665222 1233334433332222222100 1233344566666555555544443
Q ss_pred hhc---CCCcchhhhhhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010004 162 LNQ---DETPLLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLK 235 (520)
Q Consensus 162 l~~---~~~~~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~ 235 (520)
.-. .++..+ -.+-..+|...+++..=....+..+.....+ .......+......+++=.+.|.+..+..+
T Consensus 77 ~~t~l~~Gd~~l---s~~lt~istll~~~~~P~~~~l~~~~~~~~~-~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p 149 (187)
T PF01758_consen 77 VFTYLAGGDVAL---SVSLTLISTLLAPFLMPLLLYLLSGGSVDVD-SISPWDIIKSLLLIVILPLLLGMLLRKYLP 149 (187)
T ss_dssp HHHHHTT--HHH---HHHHHHHHHHHHHHHHHHHHHHHH-GGGHHH----HHHHHHHHHHHTHHHHHHHHHHHHHHG
T ss_pred HHHHHhCCCccc---ccceeeHHHHHHHHHHHHHHHHHhccccCCc-hhhHHHHHHHHHheehHHHhHHHHHHHHhh
Confidence 322 122222 2233455656665554444443333222222 111222333333334444455555554444
No 36
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=93.80 E-value=8.3 Score=38.88 Aligned_cols=148 Identities=14% Similarity=0.070 Sum_probs=79.5
Q ss_pred HHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHhhhccCCCCCcHHHHHHhhhhcccccH
Q 010004 79 FFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSI---ITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDT 155 (520)
Q Consensus 79 f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~---i~~~~~~l~~~~~~~~~~~~~all~GailsaTdp 155 (520)
....++..|+|.-|+.++.++|++..+.-... .+|...+..+ ++++....+ . ...-+..|-++-.+-|
T Consensus 39 ~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~v-ligl~~qfvlmPlla~~~~~~~------~--l~~~l~~Gl~ll~~~P 109 (319)
T COG0385 39 AIPIALALIMFGMGLTLSREDFLAGLKHPRLV-LIGLAAQFVLMPLLALLLAKLF------P--LPPELAVGLLLLGCCP 109 (319)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHHHHHHc------C--CCHHHHHhHHheeeCC
Confidence 45788999999999999999998876643221 2333333333 233333333 2 3445667777776667
Q ss_pred HHHHHhhhcCCCc-chhhhhhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010004 156 VCTLQILNQDETP-LLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVL 234 (520)
Q Consensus 156 v~v~~il~~~~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~ 234 (520)
..+.++.-..-.+ ++. +-.+...++..+++++.=.+..+..++..+.+.++.+.+.+.+.+.=+++|.++-.......
T Consensus 110 ggv~S~~~t~lAkGnVa-lsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~r~~~~~~~ 188 (319)
T COG0385 110 GGVASNAMTYLAKGNVA-LSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLPKWV 188 (319)
T ss_pred CchhHHHHHHHhcCcHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666643221111 111 11223444555555544444333323222334556667777776666666666555554444
Q ss_pred HH
Q 010004 235 KT 236 (520)
Q Consensus 235 ~~ 236 (520)
++
T Consensus 189 ~~ 190 (319)
T COG0385 189 ER 190 (319)
T ss_pred HH
Confidence 43
No 37
>COG2855 Predicted membrane protein [Function unknown]
Probab=93.08 E-value=1.8 Score=43.64 Aligned_cols=139 Identities=15% Similarity=0.121 Sum_probs=78.0
Q ss_pred cchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHH
Q 010004 42 WVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSI 121 (520)
Q Consensus 42 ~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~ 121 (520)
.+|.....+++|+++|..... ++ +-..-.++... .+|..=+-.=|++++..++.+...+.+.... .++.++++
T Consensus 36 ~l~al~lAIllGi~l~~l~~~-~~-~~~~GI~fs~k----~LLr~gIvLlG~~ltl~~i~~~G~~~v~~~~-~~l~~t~~ 108 (334)
T COG2855 36 GLSALTLAILLGILLGILPQI-PA-QTSAGITFSSK----KLLRLGIVLLGFRLTLSDIADVGGSGVLIIA-ITLSSTFL 108 (334)
T ss_pred CchHHHHHHHHHHHHhccccc-hh-hhccchhhhHH----HHHHHHHHHHcceeeHHHHHHcCccHHHHHH-HHHHHHHH
Confidence 478899999999999932111 11 11111334443 4444444666999999999988887666543 33333444
Q ss_pred HHHHHHHhhhccCCCCCcHHHHHHhh---hhcccccHHHHHHhhhcCCCcchhhhhhhhhhchhHHHHHHHHHHHHH
Q 010004 122 ITVGSWWLFPKLGFMGLSIQDYLALG---TIFSSTDTVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAVQKI 195 (520)
Q Consensus 122 i~~~~~~l~~~~~~~~~~~~~all~G---ailsaTdpv~v~~il~~~~~~~l~~ll~gEs~lND~~aivlf~~~~~~ 195 (520)
++...--++ ++++..+++.| +|+.+..-+++.++.|.. .++....+..-.+++- ++.++|=.+..+
T Consensus 109 ~~~~lg~~l------gld~~~a~Lia~GssICGasAiaA~~pvika~-~~eva~aIa~V~lfgt-ia~llyP~l~~~ 177 (334)
T COG2855 109 FAYFLGKLL------GLDKKLALLIAAGSSICGASAIAATAPVIKAE-EEEVAVAIAVVVLFGT-LAMLLYPLLYPL 177 (334)
T ss_pred HHHHHHHHh------CCCHHHHHHHHccchhhHHHHHHHhCCcCCCC-ccccceehhhHHHHHH-HHHHHHHHHHHH
Confidence 443333344 89999999988 445555555555566532 2233333333334443 444444444333
No 38
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=92.68 E-value=0.55 Score=43.89 Aligned_cols=129 Identities=16% Similarity=0.238 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCC-----HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 010004 48 TAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVK-----KKQFFHNFLTIMMFGVIGVFISVSII 122 (520)
Q Consensus 48 ~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~-----~~~f~~~~~~il~la~~g~~i~~~~i 122 (520)
..+++|+++|..... + .... +-..++.|-.++|..|.++- .|++++..++++.+.+. +++..++.
T Consensus 3 ~~li~Gi~lG~~~~~--~------~~~~-~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~-tIlGSllg 72 (191)
T PF03956_consen 3 IALILGILLGYFLRP--P------FSLI-DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLA-TILGSLLG 72 (191)
T ss_pred eeHHHHHHHHHHhcc--c------cccc-ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHH-HHHHHHHH
Confidence 456788899864331 1 1111 33667888899999999984 33555555677766544 44445566
Q ss_pred HHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcCCCcchhhhhhhhhhchhHHHHHHHHHHHH
Q 010004 123 TVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAVQK 194 (520)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~~~~~l~~ll~gEs~lND~~aivlf~~~~~ 194 (520)
+..+..++ ++++.+++..|+=..==+-.. ..+.|...|.+.++-+=.-++-+.+++++.-.+..
T Consensus 73 g~l~~~ll------~~~~~~~lav~sG~GwYSlsg--~~i~~~~~~~~G~iafl~n~~RE~~a~~~~P~~~r 136 (191)
T PF03956_consen 73 GLLASLLL------GLSLKESLAVASGFGWYSLSG--VLITQLYGPELGTIAFLSNLFREILAIILIPLLAR 136 (191)
T ss_pred HHHHHHHh------cCCHHHHHHHHccCcHHHhHH--HHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666 899999999887664333222 22445566677777666666677777776666555
No 39
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=92.41 E-value=1.8 Score=49.98 Aligned_cols=71 Identities=10% Similarity=0.178 Sum_probs=42.7
Q ss_pred HHHhhHHHHHhhhhcCCHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHH
Q 010004 80 FIYLLPPIIFNAGFQVKKKQFFHN--FLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVC 157 (520)
Q Consensus 80 ~~~~L~~IlF~aG~~l~~~~f~~~--~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~ 157 (520)
..+++|+-....|+++|.+.+... +..+..+.+++.+.-.+...+.. .+. ++++.+++.+|.++++-.-+.
T Consensus 324 ~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a-~~~------g~~~~eal~lG~lm~~kG~~~ 396 (832)
T PLN03159 324 SGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIA-FFY------TMPFREGITLGFLMNTKGLVE 396 (832)
T ss_pred HHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH-HHh------CCCHHHHHHHHHHHhcccHHH
Confidence 457788888899999999887532 22222222222222222222222 233 899999999999998876443
No 40
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=90.92 E-value=2.9 Score=43.83 Aligned_cols=71 Identities=15% Similarity=0.308 Sum_probs=48.3
Q ss_pred HHH-HhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHH
Q 010004 79 FFI-YLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTV 156 (520)
Q Consensus 79 f~~-~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv 156 (520)
|.+ +++|+--...|+++|.+.+.+++..++.+....+..-.......++ .+ +++...++..|...++--..
T Consensus 273 ~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~~~~~~~-~~------g~~~~~~~~~g~~~~~~ge~ 344 (397)
T COG0475 273 FGDGLFIPLFFISVGMSLDLGVLLENLLLILLLVALAILGKILGAYLAAR-LL------GFSKRLALGIGLLLRQGGEF 344 (397)
T ss_pred HHhHHHHHHHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH-HH------cCcHHHHHHHHhhhhhhhHH
Confidence 777 7888888899999999999999998666554444443333333333 33 67777777777776654443
No 41
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=90.80 E-value=7.7 Score=36.18 Aligned_cols=96 Identities=20% Similarity=0.178 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhh-------HHHHHhhhhcCCHHHH
Q 010004 28 CLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLL-------PPIIFNAGFQVKKKQF 100 (520)
Q Consensus 28 ~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L-------~~IlF~aG~~l~~~~f 100 (520)
-+...++..+.| .++|.+...+++|+++.++.-....++. .+. |-.+|.-+.| =+-+-..+++.|.++.
T Consensus 26 ~~s~~lS~~lT~-Gr~hgSAIAI~lGL~lAy~gG~~TgG~k-Gla--Di~lfsGiglmGGaMlRDfAIvaTAf~v~~~e~ 101 (254)
T TIGR00808 26 YVSHLLSKYLTK-GKLHGSAIAITMGLVLAYVGGVYTGGEK-GLA--DIAIFGGFGLMGGAMLRDLAIVATAFEVDVKEV 101 (254)
T ss_pred HHHHHHHHHHhc-CCcchhHHHHHHHHHHHHHcccccCCcc-ccc--hhhhhcchhhhhhHHHHHHHHHHHhhcCcHHHH
Confidence 333334444433 3599999999999999876443332221 111 1112221111 1224678899999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010004 101 FHNFLTIMMFGVIGVFISVSIITVGSW 127 (520)
Q Consensus 101 ~~~~~~il~la~~g~~i~~~~i~~~~~ 127 (520)
||....-..--++|+++++++....++
T Consensus 102 kkaG~~G~vsL~~G~v~~F~~Ga~vA~ 128 (254)
T TIGR00808 102 KKAGKVGMVALLLGCVIPFVIGAMVAW 128 (254)
T ss_pred HHcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887666667888888665444444
No 42
>COG2431 Predicted membrane protein [Function unknown]
Probab=90.75 E-value=2.1 Score=41.72 Aligned_cols=89 Identities=24% Similarity=0.283 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCC-----HHHHHHhHHHHHHHHHHHHHHHH
Q 010004 45 ESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVK-----KKQFFHNFLTIMMFGVIGVFISV 119 (520)
Q Consensus 45 ~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~-----~~~f~~~~~~il~la~~g~~i~~ 119 (520)
..++..+.|++.|.+.... .. +++.-.++.|-.++|..|+++. .|+..=| |..+.++ .-++++.
T Consensus 108 k~~~~vl~g~~~G~l~~~~--------~~-~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Ln-k~gl~l~-~i~ilss 176 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSF--------LN-FPENASEYLLYLLLFLIGIQLGNSGISLRQVLLN-KRGLILA-FITLLSS 176 (297)
T ss_pred HHHHHHHHHHHHHHHhccc--------cc-CchhHHHHHHHHHHHHHHHHhccccchhhhHHhc-cchHHHH-HHHHHHH
Confidence 3456777888888654421 11 2455667888899999999987 2233334 3344444 3455556
Q ss_pred HHHHHHHHHhhhccCCCCCcHHHHHHhhhhc
Q 010004 120 SIITVGSWWLFPKLGFMGLSIQDYLALGTIF 150 (520)
Q Consensus 120 ~~i~~~~~~l~~~~~~~~~~~~~all~Gail 150 (520)
.+.|....+++ ++|+.+++.+++=.
T Consensus 177 liGG~iaa~~l------~lpl~~~lAmasG~ 201 (297)
T COG2431 177 LIGGLIAAFLL------DLPLTTGLAMASGF 201 (297)
T ss_pred HHHHHHHHHHH------hccHHHHHHHHhcc
Confidence 66677777776 89999888877655
No 43
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=89.99 E-value=6.7 Score=35.91 Aligned_cols=85 Identities=14% Similarity=0.210 Sum_probs=54.1
Q ss_pred cchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCH---HHHHHhHHHHHHHHHHHHHHH
Q 010004 42 WVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKK---KQFFHNFLTIMMFGVIGVFIS 118 (520)
Q Consensus 42 ~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~---~~f~~~~~~il~la~~g~~i~ 118 (520)
.+-.+.+.+++|+++|..-...+...+ .. -++.+.++.|..-++..|++--. +.++++..+...++++-+.++
T Consensus 22 ~LG~a~G~L~vgL~~G~~~~~~~~~~~---~~-~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~ 97 (169)
T PF06826_consen 22 SLGAAGGVLFVGLILGALGRTGPIFLP---IS-APSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLVP 97 (169)
T ss_pred eccccHHHHHHHHHHHHhhhccCCCCC---cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 466777999999999975432111101 11 23456778888888888887754 345666666777777777776
Q ss_pred HHHHHHHHHHhh
Q 010004 119 VSIITVGSWWLF 130 (520)
Q Consensus 119 ~~~i~~~~~~l~ 130 (520)
.++.....++++
T Consensus 98 ~~~~~~~~~~~~ 109 (169)
T PF06826_consen 98 LLIALVIGRYLF 109 (169)
T ss_pred HHHHHHHHHHHc
Confidence 666555555455
No 44
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=89.09 E-value=26 Score=35.10 Aligned_cols=129 Identities=14% Similarity=0.097 Sum_probs=81.0
Q ss_pred HhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHH--HHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHH
Q 010004 37 LEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFF--IYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIG 114 (520)
Q Consensus 37 ~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~--~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g 114 (520)
.++.+++|. +.|++=+++|.+++-+.+...+..=.+...+|. ...+...+|-.|-++|.|+..+..++-..+-+.=
T Consensus 4 ~~~i~kiPG--G~mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K 81 (314)
T PF03812_consen 4 KKTIEKIPG--GMMVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVK 81 (314)
T ss_pred hHhhccCCC--ceeHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHHHHHH
Confidence 344455775 566777777776654333221111122222221 3456777999999999999988888876665555
Q ss_pred HHHHHHHHHHHHHHhhhccCCC-C-CcHHHHHHhhhhcccccHHHHHHhhhcCCCc
Q 010004 115 VFISVSIITVGSWWLFPKLGFM-G-LSIQDYLALGTIFSSTDTVCTLQILNQDETP 168 (520)
Q Consensus 115 ~~i~~~~i~~~~~~l~~~~~~~-~-~~~~~all~GailsaTdpv~v~~il~~~~~~ 168 (520)
+.+. +++++....+++.-|++ + +-=..++.+=+.++.+.+..-+++.+|++++
T Consensus 82 ~~~~-~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~ 136 (314)
T PF03812_consen 82 FIIG-ALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDE 136 (314)
T ss_pred HHHH-HHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCH
Confidence 5554 44566666666543321 1 1113466777888999999999999998876
No 45
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=88.72 E-value=34 Score=35.89 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=21.9
Q ss_pred HHHHHHHHHh-----hhcchhHHHHHHHhhhcccc
Q 010004 255 AYLSYILAEL-----LELSGILTVFFCGIFMSHYA 284 (520)
Q Consensus 255 ~~~~~~~ae~-----~g~Sgilav~~~Gl~~~~~~ 284 (520)
....|.+.+. +.+...+.++++|+.++|..
T Consensus 228 i~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~ 262 (398)
T TIGR00210 228 LLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPL 262 (398)
T ss_pred HHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHH
Confidence 4455555554 34788999999999999754
No 46
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=87.44 E-value=6.7 Score=39.52 Aligned_cols=138 Identities=19% Similarity=0.250 Sum_probs=88.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhccccCccccccCh--hHHHHHhhHHHHHhhhhcC--CHHHHHHhHHHHHHHHHHHHHHHH
Q 010004 44 NESITAILIGCVSGIIILSITKWKSSHILRFDE--ELFFIYLLPPIIFNAGFQV--KKKQFFHNFLTIMMFGVIGVFISV 119 (520)
Q Consensus 44 p~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~--~~f~~~~L~~IlF~aG~~l--~~~~f~~~~~~il~la~~g~~i~~ 119 (520)
..++.+++-|+++|.+.. +.+ ...+.| +-.|.-.|++.+.+-|+.- +.+++||..+....++++.=++..
T Consensus 177 ~~sv~LLlGgliIG~~~g--~~g----~~~i~pf~~~lF~G~L~lFLLeMGl~A~~rL~~l~~~g~~li~Fgi~~Pli~a 250 (327)
T PF05982_consen 177 NKSVVLLLGGLIIGFLAG--PEG----VESIKPFFVDLFKGVLCLFLLEMGLVAARRLRDLRKVGWFLIAFGILMPLINA 250 (327)
T ss_pred CchHHHHHHHHHHhheeC--ccc----hhhccchhhccHHHHHHHHHHHhhHHHHHhhHHHHhhhHHHHHHHHHHHHHHH
Confidence 446778888999996421 111 112222 1145677888889988875 456788888888888777666665
Q ss_pred HHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcCC---Ccchhhhh-hhh-hhchhHHHHHHHHHHHH
Q 010004 120 SIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDE---TPLLYSLV-FGE-GVVNDATSVVLFNAVQK 194 (520)
Q Consensus 120 ~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~~---~~~l~~ll-~gE-s~lND~~aivlf~~~~~ 194 (520)
.+.....+ ++ +++...+.+++.+.++-|=.++-+.+|.-- +|-+|-.. .|- ==+|=.++|.+|..+..
T Consensus 251 ~ig~~lg~-~~------gls~Gg~~llavLaASASYIAvPAAmR~AiPeAnpslyl~~SLgiTFPfNi~iGIPLY~~la~ 323 (327)
T PF05982_consen 251 LIGIGLGW-LL------GLSPGGAVLLAVLAASASYIAVPAAMRAAIPEANPSLYLTASLGITFPFNILIGIPLYYALAQ 323 (327)
T ss_pred HHHHHHHH-Hh------CCCCccHHHHHHHHhhHhhhhhhHHHHhhCcccCchHHHHHHHhcccchhHhhccHHHHHHHH
Confidence 54333333 44 899999999999998888888888877532 34343221 111 13677777777765443
No 47
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=87.35 E-value=38 Score=34.86 Aligned_cols=61 Identities=18% Similarity=0.302 Sum_probs=45.3
Q ss_pred HHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHh
Q 010004 79 FFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLAL 146 (520)
Q Consensus 79 f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~ 146 (520)
|.++..+-++--+=+.+|.+.+-|.........+.|++...+ .+...-.++ ++++.+.+++
T Consensus 112 FL~fyIA~LI~GSILgmnRklLIk~~~~~i~~il~g~v~A~~-~g~lVG~~~------G~~~~d~~m~ 172 (438)
T COG3493 112 FLDFYIAALIVGSILGMNRKLLIKSLKRYIPPILAGMVGAAA-VGILVGLLF------GLSFQDTMMY 172 (438)
T ss_pred hHHHHHHHHHHhhhhhccHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHh------CCChHHeeee
Confidence 778888999999999999999998888777666666665443 344444455 8888877664
No 48
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=86.87 E-value=28 Score=36.13 Aligned_cols=96 Identities=15% Similarity=0.155 Sum_probs=63.9
Q ss_pred HHHHHHHHHhh-cCcchhHHHHHHHHHHHHHHHHhhccccCccccccChh---HHHHHhhHHHHHhhhhcCCHHHHHHhH
Q 010004 29 LCLIVGHLLEE-NRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEE---LFFIYLLPPIIFNAGFQVKKKQFFHNF 104 (520)
Q Consensus 29 ~~~~~~~~~~~-~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~---~f~~~~L~~IlF~aG~~l~~~~f~~~~ 104 (520)
++..+..++++ ...+|.-+..++.|+++-.+....... ..|.+ .+....|-..+..+=.++|...+.++.
T Consensus 232 ~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~~~~~~~------~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a 305 (368)
T PF03616_consen 232 LGYIISALLKKIGLTLPLFVGAMIVGIIVRNILDKTGKY------KIDRKTIDRISGISLDLFLAMALMSLKLWVLADYA 305 (368)
T ss_pred HHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHHHHhCcc------cCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 33334444443 345888888888888887655433211 13332 366777888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010004 105 LTIMMFGVIGVFISVSIITVGSWWLF 130 (520)
Q Consensus 105 ~~il~la~~g~~i~~~~i~~~~~~l~ 130 (520)
.+++.+-+.+++++.+..-++++..+
T Consensus 306 ~Plliil~~q~i~~~~f~~fv~fr~~ 331 (368)
T PF03616_consen 306 LPLLIILAVQTILMVLFAYFVTFRVM 331 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99998878888876655444444344
No 49
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=86.59 E-value=24 Score=31.75 Aligned_cols=109 Identities=11% Similarity=0.013 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHHHHhHH
Q 010004 26 ILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFL 105 (520)
Q Consensus 26 lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f~~~~~ 105 (520)
.+.++.+.+.++++.+ +|. ..++..++.+.........+ .. -|+.+.......+=...|.+.+.+.+++..+
T Consensus 3 ~~~~~~~~g~l~~~l~-~Pa--~~llG~mi~~~~~~~~~~~~----~~-~P~~~~~~~qviiG~~iG~~f~~~~l~~~~~ 74 (156)
T TIGR03082 3 LLLVGLAGGLLASLLG-LPA--AWLLGPLLAGAVLSLAGGLE----IT-LPPWLLALAQVVIGILIGSRFTREVLAELKR 74 (156)
T ss_pred HHHHHHHHHHHHHHHC-CCc--HHHHHHHHHHHHHHhcCCcc----CC-CCHHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 3445556667776544 774 33444455554433322111 11 2445777777888889999999877665544
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhh
Q 010004 106 TIM--MFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTI 149 (520)
Q Consensus 106 ~il--~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~Gai 149 (520)
... ......++..++..+...+... ++++.+++ +|+.
T Consensus 75 ~~~~~l~~~~~~l~~~~~~~~~l~~~~------~~~~~ta~-La~~ 113 (156)
T TIGR03082 75 LWPAALLSTVLLLALSALLAWLLARLT------GVDPLTAF-LATS 113 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHH-HHhC
Confidence 332 2223333333444444444444 78888885 4443
No 50
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=86.42 E-value=41 Score=34.37 Aligned_cols=114 Identities=14% Similarity=0.097 Sum_probs=63.0
Q ss_pred cchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHH
Q 010004 42 WVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSI 121 (520)
Q Consensus 42 ~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~ 121 (520)
.++..+..+++|+++|.......+.....-.++..+.+.++. +-.-|.+++.+++.+.....+......+..+.+.
T Consensus 30 ~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~g----IVLlG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~ 105 (335)
T TIGR00698 30 ALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIG----ITLYGFRLTFPYIADVGPNEIVADTLILTSTFFL 105 (335)
T ss_pred CCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHH----HHHHCccccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 477777778888877753210000000000122223333433 3556999999999998887776655554444333
Q ss_pred HHHHHHHhhhccCCCCCcHHHHHHhh---hhcccccHHHHHHhhhcC
Q 010004 122 ITVGSWWLFPKLGFMGLSIQDYLALG---TIFSSTDTVCTLQILNQD 165 (520)
Q Consensus 122 i~~~~~~l~~~~~~~~~~~~~all~G---ailsaTdpv~v~~il~~~ 165 (520)
......-.+ +++...++++| +|+.++.-+++.++.|..
T Consensus 106 ~~~~g~k~l------~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A~ 146 (335)
T TIGR00698 106 TVFLGSSRL------KLDKQMSILLGAGSSICGAAAVAAIEPVIKAE 146 (335)
T ss_pred HHHHHHHHh------CCChhHHHHHHcchhHHHHHHHHHhccccCCC
Confidence 233321223 67777777776 455566666666666643
No 51
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=86.20 E-value=3.4 Score=41.41 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=42.0
Q ss_pred hhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhh
Q 010004 83 LLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALG 147 (520)
Q Consensus 83 ~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~G 147 (520)
.+|...|.-|.+++.++..+...+.+.+++..++++.... ....-++ +.+-..+.+.|
T Consensus 197 ~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~-~~i~rll------g~~~~~g~li~ 254 (312)
T PRK12460 197 LIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFN-IFADRLV------GGTGIAGAAAS 254 (312)
T ss_pred eHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHH-HHHHHHh------CCChhHHHHHH
Confidence 7788889999999999999999988888877776654433 2222333 55555666666
No 52
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=86.12 E-value=46 Score=34.65 Aligned_cols=86 Identities=15% Similarity=0.165 Sum_probs=55.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHH
Q 010004 41 RWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVS 120 (520)
Q Consensus 41 ~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~ 120 (520)
+++|..+..++.|+++...... .+...++ --+....+.+|.-++.-=++.|.|+.+|..++.+. ++....++++
T Consensus 23 ~~l~~~vl~~~~~~~lsnlgli-~~p~~s~----~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~-~F~~~~~g~v 96 (378)
T PF05684_consen 23 KYLPGAVLCYLLGMLLSNLGLI-DSPASSP----VYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLL-AFLIGAVGTV 96 (378)
T ss_pred hhcCHHHHHHHHHHHHHHCCCc-CCCCcch----HHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHH-HHHHHHHHHH
Confidence 5789999999898888854222 1111111 11347778888888888889999999999887554 3333334444
Q ss_pred HHHHHHHHhhhc
Q 010004 121 IITVGSWWLFPK 132 (520)
Q Consensus 121 ~i~~~~~~l~~~ 132 (520)
+.+...+++++.
T Consensus 97 iG~~va~~l~~~ 108 (378)
T PF05684_consen 97 IGAVVAFLLFGG 108 (378)
T ss_pred HHHHHHHHHHhh
Confidence 445556666654
No 53
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=85.33 E-value=18 Score=37.80 Aligned_cols=153 Identities=14% Similarity=0.124 Sum_probs=87.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhc-
Q 010004 16 QVVPISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQ- 94 (520)
Q Consensus 16 ~~~~l~~~~~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~- 94 (520)
+...+-.-..+-+....++.++++...+|.....++.=+++=. ....++ +.++-...-.+++..-+.+++++-.|..
T Consensus 244 ~~~~~g~Gllla~~~y~~G~ll~~~i~ih~~a~mIi~~~i~K~-~~lvP~-~~e~~a~~~~~f~~~~lt~~lLvgiGv~~ 321 (414)
T PF03390_consen 244 DFSDMGAGLLLACSFYILGVLLSKLIGIHAYAWMIILVAIVKA-FGLVPE-SLEEGAKQWYKFFSKNLTWPLLVGIGVAY 321 (414)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-hCcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333433334455556677888877789988877655444321 111111 1111011112346678899999999999
Q ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhh-hcc---cccHHHHHHhhhcCC-Cc-
Q 010004 95 VKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGT-IFS---STDTVCTLQILNQDE-TP- 168 (520)
Q Consensus 95 l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~Ga-ils---aTdpv~v~~il~~~~-~~- 168 (520)
+|++++.+.+.....+-+..+++...+.+...-.++ ++...|+-.-+. +.+ -|-=+++++--++.+ .|
T Consensus 322 ~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~------g~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~LmpF 395 (414)
T PF03390_consen 322 TDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLV------GFYPVESAITAGLCMANMGGTGDVAVLSAANRMELMPF 395 (414)
T ss_pred CcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh------CCChHHHHHHhhhcccCCCCCCcchheehhhhcccccH
Confidence 999999998866555555555555555555444455 565555544444 333 355556666666555 33
Q ss_pred -chhhhhhh
Q 010004 169 -LLYSLVFG 176 (520)
Q Consensus 169 -~l~~ll~g 176 (520)
++.+.+-|
T Consensus 396 AQIstRiGG 404 (414)
T PF03390_consen 396 AQISTRIGG 404 (414)
T ss_pred HHHHHhhhh
Confidence 45544444
No 54
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=85.29 E-value=35 Score=34.66 Aligned_cols=108 Identities=10% Similarity=0.000 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHHHHh
Q 010004 24 VAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHN 103 (520)
Q Consensus 24 ~~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f~~~ 103 (520)
..++..+...+++.+|.+ +|. ..++..++.+.......... ..+ |+.+.......+=-..|.+.+.+.+++.
T Consensus 158 ~~l~~~~~~g~~l~~~l~-iPa--~~llGpml~~a~~~~~~~~~----~~~-P~~l~~~aqv~iG~~iG~~f~~~~l~~~ 229 (318)
T PF05145_consen 158 ALLALAALAGGLLARRLR-IPA--PWLLGPMLVSAILNLFGGPS----FSL-PPWLVNAAQVLIGASIGSRFTRETLREL 229 (318)
T ss_pred HHHHHHHHHHHHHHHHhC-CCc--HHHHHHHHHHHHHHHHhCCC----CCC-CHHHHHHHHHHHHHHHHccccHHHHHHH
Confidence 344445555566666544 774 33333444443333321111 222 4567777777888889999998877666
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHH
Q 010004 104 FLTIM--MFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLA 145 (520)
Q Consensus 104 ~~~il--~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all 145 (520)
.+.+. .......+..++..+...+.+. ++++.++++
T Consensus 230 ~~~~~~~l~~~~~~l~~~~~~a~~l~~~~------~~~~~t~~L 267 (318)
T PF05145_consen 230 RRLLPPALLSTLLLLALCALFAWLLSRLT------GIDFLTALL 267 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHH
Confidence 55432 2222333333444455555554 788876654
No 55
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=85.14 E-value=36 Score=32.53 Aligned_cols=72 Identities=13% Similarity=0.185 Sum_probs=46.0
Q ss_pred HhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhc--ccccHHHHHHhhhcCC
Q 010004 89 FNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIF--SSTDTVCTLQILNQDE 166 (520)
Q Consensus 89 F~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~Gail--saTdpv~v~~il~~~~ 166 (520)
|..-+-=+++.+||||++++.-.+.|...+.......+.++ +++-. +.-+++ |.|.|++ +.+-++.+
T Consensus 75 lAvPLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~-------g~~~~---~~~Sl~PkSvTTpiA-m~vs~~iG 143 (230)
T COG1346 75 LAVPLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLF-------GLSPE---LILSLLPKSVTTPIA-MEVSESIG 143 (230)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCCHH---HHHHhcccccccHHH-HHHHHhcC
Confidence 33344457889999999999988888888766555555443 44433 223333 6677766 56666664
Q ss_pred -Ccchh
Q 010004 167 -TPLLY 171 (520)
Q Consensus 167 -~~~l~ 171 (520)
.|.+.
T Consensus 144 Gip~lt 149 (230)
T COG1346 144 GIPALT 149 (230)
T ss_pred CchHHH
Confidence 66544
No 56
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=84.09 E-value=48 Score=33.05 Aligned_cols=70 Identities=20% Similarity=0.134 Sum_probs=39.4
Q ss_pred hhHHHHHhhhhcCCHHHHHHhHHH--HHHHHHH-HHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHH
Q 010004 83 LLPPIIFNAGFQVKKKQFFHNFLT--IMMFGVI-GVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTL 159 (520)
Q Consensus 83 ~L~~IlF~aG~~l~~~~f~~~~~~--il~la~~-g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~ 159 (520)
.+..++|..|.+++.+++++..+. ....++. -.++.-++. +....++ +.+ ..+..|.++.+.-|.++.
T Consensus 13 ~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla-~~l~~~~------~l~--~~~~~glvL~~~~P~~~~ 83 (286)
T TIGR00841 13 LLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTG-FLLAKVF------KLP--PELAVGVLIVGCCPGGTA 83 (286)
T ss_pred HHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHH-HHHHHHh------CCC--HHHHHHHHheeeCCCchH
Confidence 388899999999999999887762 2222222 222322222 2222223 333 455666666666665555
Q ss_pred Hh
Q 010004 160 QI 161 (520)
Q Consensus 160 ~i 161 (520)
+.
T Consensus 84 s~ 85 (286)
T TIGR00841 84 SN 85 (286)
T ss_pred HH
Confidence 44
No 57
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=83.34 E-value=63 Score=33.90 Aligned_cols=154 Identities=12% Similarity=0.095 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHhh-----cCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHH
Q 010004 25 AILCLCLIVGHLLEE-----NRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQ 99 (520)
Q Consensus 25 ~lL~~~~~~~~~~~~-----~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~ 99 (520)
.++.++..+++.+.+ ...+|.-+..++.|+++-.+.......+ ..+-.-+.+....|-..+-.|=.++|..+
T Consensus 222 ~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~~~~~~~~---~~~~~i~~I~~~sLdlfl~~AlmsL~L~~ 298 (398)
T TIGR00210 222 ALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPLSFKKFPW---VAERAVSVIGNVSLSLFLAIALMSLQLWE 298 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHhCccc---cchHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 344444445555443 2358999999999998887665432211 11111233667778888888889999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHH----HhhhhcccccHH--HHHHhhhcCCCc-chhh
Q 010004 100 FFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYL----ALGTIFSSTDTV--CTLQILNQDETP-LLYS 172 (520)
Q Consensus 100 f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~al----l~GailsaTdpv--~v~~il~~~~~~-~l~~ 172 (520)
+.+++.+++.+.+.+++++.+..-+.++..+ +-++..+. .+|--+.+|-.+ -.-++-++++.. +-.-
T Consensus 299 l~~~a~Plliil~~q~i~~~l~~~fv~fr~m------g~~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~s~~af~ 372 (398)
T TIGR00210 299 LADLAGPIALILLVQVMFMALYAIFVTFRLM------GKDYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAFI 372 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhc------cchHHHHHHhcccccccccchHHHHHHHHHHHhccCCCCccee
Confidence 9999999999999999998766555555555 22344443 455556555444 334566777744 4222
Q ss_pred h--hhhhhhchhHHHHHH
Q 010004 173 L--VFGEGVVNDATSVVL 188 (520)
Q Consensus 173 l--l~gEs~lND~~aivl 188 (520)
+ +.| +.+-|.+-...
T Consensus 373 ivPlvg-af~id~~n~~~ 389 (398)
T TIGR00210 373 VVPLVG-AFFIDIINALV 389 (398)
T ss_pred hhhhHH-HHHHHHhhHHH
Confidence 2 232 45555444433
No 58
>KOG3826 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=82.31 E-value=3.2 Score=39.49 Aligned_cols=78 Identities=18% Similarity=0.064 Sum_probs=64.9
Q ss_pred HHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHH
Q 010004 79 FFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCT 158 (520)
Q Consensus 79 f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v 158 (520)
.....+-++.-++|++++.|.+++.......+++....+.+..-+...++++ +.+|.++++.|.++.+..+...
T Consensus 159 l~t~a~~I~~ik~gLgt~~r~~~nv~~vc~~~~v~~~~~~a~a~~~~S~~~l------~~~ii~~~l~g~v~~~i~~~~~ 232 (252)
T KOG3826|consen 159 LRTVALTIIKIKAGLGTLPRAPENVLAVCCVLMVLPSIIEASAPAVTSHFLL------AGPIIWAFLLGIVIGSILWRFP 232 (252)
T ss_pred hhhccchHHHHHhhhcccccchhhhhHHHhhhhhhhhhhccccHHHHHHHHh------ccchHHHhccccceeeeecCCc
Confidence 4456677888999999999999999999989888888887777666777776 8999999999999999888665
Q ss_pred HHhh
Q 010004 159 LQIL 162 (520)
Q Consensus 159 ~~il 162 (520)
-+-.
T Consensus 233 r~~~ 236 (252)
T KOG3826|consen 233 RPDY 236 (252)
T ss_pred cccc
Confidence 5444
No 59
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=81.78 E-value=31 Score=35.34 Aligned_cols=143 Identities=14% Similarity=0.118 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhc-CCHHHHHHh
Q 010004 25 AILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQ-VKKKQFFHN 103 (520)
Q Consensus 25 ~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~-l~~~~f~~~ 103 (520)
.+.+....++.+++....+|..+..++.|+++-.. ...+.+.++-..--.+++...+..+++.--|+. .|++++.+.
T Consensus 186 ~~a~~~y~~g~l~~~~~~Ih~~v~mII~~vi~k~~--gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a 263 (347)
T TIGR00783 186 LFAVALFMAGGLLKSFPGIPAYAFMILIAAALKAF--GLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAA 263 (347)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHH
Confidence 34444455666666433578888888888777532 111111111011111245566788888888987 899999998
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHH-HHhhhhcc---cccHHHHHHhhhcCC-Cc--chhhhhh
Q 010004 104 F-LTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDY-LALGTIFS---STDTVCTLQILNQDE-TP--LLYSLVF 175 (520)
Q Consensus 104 ~-~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~a-ll~Gails---aTdpv~v~~il~~~~-~~--~l~~ll~ 175 (520)
+ .+.+.+.+.+++- ..+.+...-.++ ++-..++ +.-|-+.+ -|-=+++++--|+.+ .| ++.+.+-
T Consensus 264 ~t~~~vviiv~~Vlg-~ii~s~lvGKll------G~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~LmpfAQIstRiG 336 (347)
T TIGR00783 264 LSWQFVVICLSVVVA-MILGGAFLGKLM------GMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIPFAQISTRLG 336 (347)
T ss_pred hchhHhhhHHHHHHH-HHHHHHHHHHHh------CCChHHHHHHHhhhccCCCCCCceeeeehhhhcccccHHHHHHHhh
Confidence 8 5544444333333 333333333344 5544444 44442332 344455555555554 33 3444444
Q ss_pred h
Q 010004 176 G 176 (520)
Q Consensus 176 g 176 (520)
|
T Consensus 337 G 337 (347)
T TIGR00783 337 G 337 (347)
T ss_pred h
Confidence 4
No 60
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=77.13 E-value=28 Score=30.77 Aligned_cols=107 Identities=8% Similarity=-0.006 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCc--chhHHHHHHHHHHHHHHHHhhccccCccccccChhHHH-HHhhHHHHHhhhhcC
Q 010004 19 PISLFVAILCLCLIVGHLLEENRW--VNESITAILIGCVSGIIILSITKWKSSHILRFDEELFF-IYLLPPIIFNAGFQV 95 (520)
Q Consensus 19 ~l~~~~~lL~~~~~~~~~~~~~~~--lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~-~~~L~~IlF~aG~~l 95 (520)
.++...++++.+...|..+.+... +|.+ ++|+++=...+.......+ ...-..+.+. ++.+-++==-.|.=.
T Consensus 8 ~~l~ql~ill~~~~lGe~i~~ll~lPiPGs----ViGMlLL~l~L~~~~vk~~-~v~~~a~~LL~~m~LfFVPagVGim~ 82 (141)
T PRK04125 8 SFLHQAFIFAAIMLISNIIASFLPIPMPAS----VIGLVLLFVLLCTKVVKLE-QVESLGTALTNNIGFLFVPSGISVIN 82 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcHH----HHHHHHHHHHHHhCCcCHH-HHHHHHHHHHHHHHHHHhhhHhHHHH
Confidence 445556677777788888887544 4443 2333332222222211111 1111122222 222222222456666
Q ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010004 96 KKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLF 130 (520)
Q Consensus 96 ~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~ 130 (520)
.+..+++++.+++...+++|++..+++|....++.
T Consensus 83 ~~~ll~~~~~~Il~~ivvSTllvl~vtg~v~~~l~ 117 (141)
T PRK04125 83 SLGVMSQYPVQIIGVIIVATILLLACTGLFSQFIL 117 (141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999998877777666554
No 61
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=76.73 E-value=92 Score=31.75 Aligned_cols=138 Identities=14% Similarity=0.036 Sum_probs=64.4
Q ss_pred HhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHh
Q 010004 82 YLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQI 161 (520)
Q Consensus 82 ~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~i 161 (520)
+++..++|--|.+++.++|+|..+.--.. ..+.+.+.++.=..++.+-.-+- +.+ ..+..|-++.+.-|-.+.+.
T Consensus 47 ~~l~~mmf~mgl~L~~~df~~~~~~pk~~-~~~~~~qfvi~Plla~~l~~l~~--~~~--p~l~~GliLv~~~Pgg~~S~ 121 (328)
T TIGR00832 47 IGLILMMYPPLAKVDYSALGDVFKDPKGL-ILSLFINWIIGPFLMFLLAWLFL--RDL--FEYIAGLILLGLARCIAMVF 121 (328)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHcCchHH-HHHHHHHHHHHHHHHHHHHHHHc--CCC--HHHHHHHHHHHhcchHHHHH
Confidence 34567899999999999998876652221 23333333332222222110000 222 23556665555555555444
Q ss_pred hh-c--CCCcchhhhhhhhhhchhHHHHHHHHHHHHHHhh--------ccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010004 162 LN-Q--DETPLLYSLVFGEGVVNDATSVVLFNAVQKIDVR--------ELNGKAALRIFRDFLYLFSTSTILGVTAG 227 (520)
Q Consensus 162 l~-~--~~~~~l~~ll~gEs~lND~~aivlf~~~~~~~~~--------~~~~~~~~~~l~~~l~~~~~s~~~G~~~G 227 (520)
.- . .++..+... -..+|..+++++.-....+..+ .....+......+.+.....=+++|.+.-
T Consensus 122 v~T~lAkGnvalsv~---lt~~stLl~~~~~P~l~~ll~~~~~~~~~~~~v~v~~~~~~~~l~~~v~lPlvlG~~lr 195 (328)
T TIGR00832 122 VWNQLAKGDPEYTLV---LVAVNSLFQVFLYAPLAWLLLGVSPIWLGLTVITVPWETIAKSVLIYLGIPLIAGILTR 195 (328)
T ss_pred HHHHHcCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCccccccceeeeCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 1 122222222 2355666666655433222111 00123444555555555555555555433
No 62
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=76.12 E-value=83 Score=31.75 Aligned_cols=34 Identities=29% Similarity=0.533 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHH----hhhcchhHHHHHHHhhhcc
Q 010004 249 ALMVLMAYLSYILAE----LLELSGILTVFFCGIFMSH 282 (520)
Q Consensus 249 ~l~l~~~~~~~~~ae----~~g~Sgilav~~~Gl~~~~ 282 (520)
.+.++.+..+|++++ ..+++..+-+.+.|+.++|
T Consensus 4 ~l~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n 41 (305)
T PF03601_consen 4 LLCFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGN 41 (305)
T ss_pred HHHHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhh
Confidence 467778888888888 4688999999999999997
No 63
>COG2855 Predicted membrane protein [Function unknown]
Probab=73.77 E-value=84 Score=31.97 Aligned_cols=149 Identities=17% Similarity=0.125 Sum_probs=70.7
Q ss_pred HHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHH-HHHHhHHHHHHhccchhhhhhhhhccccchhHHHHH
Q 010004 261 LAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMM-SFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLGVY 339 (520)
Q Consensus 261 ~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~F~~~G~~i~~~~~w~~~~~~~~~~~~~~ 339 (520)
..+..|++..+=+...|+.++++.++. ++ .+.-.+.- ..+++.- =+++|+.+...+.-+. ....
T Consensus 31 ~~~~~~l~al~lAIllGi~l~~l~~~~--~~----~~~GI~fs~k~LLr~g-IvLlG~~ltl~~i~~~----G~~~---- 95 (334)
T COG2855 31 FSIHLGLSALTLAILLGILLGILPQIP--AQ----TSAGITFSSKKLLRLG-IVLLGFRLTLSDIADV----GGSG---- 95 (334)
T ss_pred HhhhcCchHHHHHHHHHHHHhccccch--hh----hccchhhhHHHHHHHH-HHHHcceeeHHHHHHc----CccH----
Confidence 344567778888999999999665331 11 11111111 1123332 3677888843321111 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhccCCCCCCcchhhHHHHHHH
Q 010004 340 SALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITATII 419 (520)
Q Consensus 340 ~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~~~~~~~~~~~~i~~~t~~ 419 (520)
+.+.+.++..-++..+.+.+.+ +.|+|....++-+--.=|+ +.+.|..+..+ .+.+|...+. ..
T Consensus 96 v~~~~~~l~~t~~~~~~lg~~l---------gld~~~a~Lia~GssICGa-sAiaA~~pvik-----a~~~eva~aI-a~ 159 (334)
T COG2855 96 VLIIAITLSSTFLFAYFLGKLL---------GLDKKLALLIAAGSSICGA-SAIAATAPVIK-----AEEEEVAVAI-AV 159 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---------CCCHHHHHHHHccchhhHH-HHHHHhCCcCC-----CCccccceeh-hh
Confidence 1122223333333333333322 7888988888865422444 44455543322 1223333333 33
Q ss_pred HHHHHHhhhhhchHHHHHHhCC
Q 010004 420 IVLFTTLVFGFLTRPLVKYLLP 441 (520)
Q Consensus 420 vVl~T~~v~g~~~~~l~~~l~~ 441 (520)
++++.++. -..-|.+..++..
T Consensus 160 V~lfgtia-~llyP~l~~~l~l 180 (334)
T COG2855 160 VVLFGTLA-MLLYPLLYPLLGL 180 (334)
T ss_pred HHHHHHHH-HHHHHHHHHHhCC
Confidence 44454443 2445666777764
No 64
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=73.62 E-value=1.1e+02 Score=31.29 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHh-----hhcchhHHHHHHHhhhccc
Q 010004 248 IALMVLMAYLSYILAEL-----LELSGILTVFFCGIFMSHY 283 (520)
Q Consensus 248 ~~l~l~~~~~~~~~ae~-----~g~Sgilav~~~Gl~~~~~ 283 (520)
..+.+.+++.++++++. .+++.++-+...|+.++|.
T Consensus 7 ~~l~~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~ 47 (335)
T TIGR00698 7 LLQMALILLLAGAAGSIINLADPALSALFLAILLGMVAGNT 47 (335)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhcc
Confidence 34566777777777774 4789999999999999984
No 65
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=73.14 E-value=71 Score=34.09 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=18.8
Q ss_pred hhhcCC-CcchhhhhhhhhhchhHHHHHHHHHHH
Q 010004 161 ILNQDE-TPLLYSLVFGEGVVNDATSVVLFNAVQ 193 (520)
Q Consensus 161 il~~~~-~~~l~~ll~gEs~lND~~aivlf~~~~ 193 (520)
++++.+ .|...+.-+ -+.++|.++++.|-.+.
T Consensus 411 ~~~k~~~DPa~~s~p~-itt~~D~~g~~~~~~~a 443 (449)
T TIGR00400 411 VAKLLKLDPALMSGPL-ITTIADALTLIIYFNIA 443 (449)
T ss_pred HHHHcCCChhhhhhhH-HHHHHHHHHHHHHHHHH
Confidence 345555 555444333 36678988887766443
No 66
>PRK03818 putative transporter; Validated
Probab=73.06 E-value=38 Score=37.22 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHhhccccCccccccChh---HHHHHhhHHHHHhhhhcCCHH---HHHHhHHHHHHHHHHHHHHHH
Q 010004 46 SITAILIGCVSGIIILSITKWKSSHILRFDEE---LFFIYLLPPIIFNAGFQVKKK---QFFHNFLTIMMFGVIGVFISV 119 (520)
Q Consensus 46 ~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~---~f~~~~L~~IlF~aG~~l~~~---~f~~~~~~il~la~~g~~i~~ 119 (520)
..+.+++|+++|.+.. ... ...++. .+.++.|..-+|..|++--.. .++++..+...++++-+++..
T Consensus 33 ~~g~L~~gl~~G~~~~----~~~---~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~ 105 (552)
T PRK03818 33 IGGVLFGGIIVGHFVS----QFG---LTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILGG 105 (552)
T ss_pred cHHHHHHHHHHhcccc----ccC---cccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4788889999985321 001 112222 355788888889999988754 344444455556655555544
Q ss_pred HHHHHHHHHhh
Q 010004 120 SIITVGSWWLF 130 (520)
Q Consensus 120 ~~i~~~~~~l~ 130 (520)
++ ++.+++++
T Consensus 106 ~~-~~~~~~~~ 115 (552)
T PRK03818 106 LV-TAILHKLF 115 (552)
T ss_pred HH-HHHHHHHh
Confidence 33 55555555
No 67
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=72.74 E-value=44 Score=36.83 Aligned_cols=120 Identities=15% Similarity=0.200 Sum_probs=69.5
Q ss_pred HHHHHHHHhhcC----cchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHH---HH
Q 010004 30 CLIVGHLLEENR----WVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQF---FH 102 (520)
Q Consensus 30 ~~~~~~~~~~~~----~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f---~~ 102 (520)
++.+|+++-|.+ .+-.+.+.+++|+++|.+ . ..+++ .+.++++.+-+|..||+.-.+-| ||
T Consensus 18 ~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~----g-------~~i~~-~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~ 85 (562)
T TIGR03802 18 SLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQL----G-------IQIDP-GVKAVFFALFIFAIGYEVGPQFFASLKK 85 (562)
T ss_pred HHHHhHhhcceEEeeeecchHHHHHHHHHHHHhc----C-------CCCCh-HHHHHHHHHHHHHhhhccCHHHHHHHHh
Confidence 334555555422 255567899999999952 1 12233 36678888889999999986544 44
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcCC
Q 010004 103 NFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDE 166 (520)
Q Consensus 103 ~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~~ 166 (520)
+..+...++++-++.. +++++.+.+++ |+ +.+....++-||.-+...-.++...+++.+
T Consensus 86 ~g~~~~~~a~~~~~~~-~~~~~~~~~~~---g~-~~~~~~Gl~aGalT~tp~l~aA~~a~~~~~ 144 (562)
T TIGR03802 86 DGLREIILALVFAVSG-LITVYALAKIF---GL-DKGTAAGLAAGGLTQSAVIGTAGDAIEKLG 144 (562)
T ss_pred ccHHHHHHHHHHHHHH-HHHHHHHHHHh---CC-CHHHHHHHHhchhhccHHHHHHHHHHHhcC
Confidence 4334555555444443 33344444444 22 344556677777766555555555555443
No 68
>PRK05326 potassium/proton antiporter; Reviewed
Probab=72.62 E-value=26 Score=38.54 Aligned_cols=30 Identities=10% Similarity=0.121 Sum_probs=18.4
Q ss_pred HHHhhHHHHHhhhhcCCHHHHHHhHHHHHH
Q 010004 80 FIYLLPPIIFNAGFQVKKKQFFHNFLTIMM 109 (520)
Q Consensus 80 ~~~~L~~IlF~aG~~l~~~~f~~~~~~il~ 109 (520)
..++.|+.-+..|+.+|.+.+.+.....+.
T Consensus 276 ~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~ 305 (562)
T PRK05326 276 AWLAQIGMFLVLGLLVTPSRLLDIALPALL 305 (562)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 345556666677888877777655444333
No 69
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=71.02 E-value=61 Score=33.43 Aligned_cols=142 Identities=15% Similarity=0.175 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccc---cccChhHHHHHhhHHHHHhhhhc-CCHHHH
Q 010004 25 AILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHI---LRFDEELFFIYLLPPIIFNAGFQ-VKKKQF 100 (520)
Q Consensus 25 ~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~---~~~~~~~f~~~~L~~IlF~aG~~-l~~~~f 100 (520)
++-+.....++++.+...+|.....+++ +-.++....- -+... ..--.++|..=..=++++-.|.. .|+++.
T Consensus 271 llA~~lf~~g~il~kf~~~P~~va~MIi---l~a~lk~~nl-vp~~i~~GA~~l~~F~sk~~t~~Lm~giGv~ytdl~ev 346 (438)
T COG3493 271 LLACTLFMAGGILGKFIGLPGPVAFMII---LVAILKAANL-VPKEIEEGAKQLSQFFSKNLTWPLMAGIGVAYTDLNEV 346 (438)
T ss_pred HHHHHHHHHHHHHHHhhcCCchHHHHHH---HHHHHHHhCc-CCHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccHHHH
Confidence 3445556678888887668866644432 2222222211 01100 00011235555677889999998 899999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC-cHHHHHHhhhhcc---cccHHHHHHhhhcCC-Cc--chhhh
Q 010004 101 FHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGL-SIQDYLALGTIFS---STDTVCTLQILNQDE-TP--LLYSL 173 (520)
Q Consensus 101 ~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~-~~~~all~Gails---aTdpv~v~~il~~~~-~~--~l~~l 173 (520)
-+....-..+-...+++.....+...-+++ ++ |...|..-|.|.+ -|.=+++++--++.+ .| ++.+.
T Consensus 347 ~~alt~~~vii~~~vVl~~i~~~~f~grl~------~~YPVEaAI~aglC~a~~GGtGDvaVLsAa~RM~LmpFAQiSsR 420 (438)
T COG3493 347 AAALTWQNVIIALSVVLGAILGGAFVGRLM------GFYPVEAAITAGLCMANMGGTGDVAVLSAADRMELMPFAQISSR 420 (438)
T ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHHHh------cCCchHHHHHHhHHhcCCCCCCchHHhhhcchhccccHHHHHhh
Confidence 877665555555566665555555555555 44 4455555556664 466666666666554 23 34444
Q ss_pred hhh
Q 010004 174 VFG 176 (520)
Q Consensus 174 l~g 176 (520)
+-|
T Consensus 421 LGG 423 (438)
T COG3493 421 LGG 423 (438)
T ss_pred cCc
Confidence 443
No 70
>PRK01658 holin-like protein; Validated
Probab=68.82 E-value=63 Score=27.85 Aligned_cols=106 Identities=19% Similarity=0.212 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCc--chhHHHHHHHHHHHHHHHHhhccccCccccccChhHHH-HHhhHHHHHhhhhcCC
Q 010004 20 ISLFVAILCLCLIVGHLLEENRW--VNESITAILIGCVSGIIILSITKWKSSHILRFDEELFF-IYLLPPIIFNAGFQVK 96 (520)
Q Consensus 20 l~~~~~lL~~~~~~~~~~~~~~~--lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~-~~~L~~IlF~aG~~l~ 96 (520)
++....+++.+...|..+.+... +|.++ +|+++=...+.....+.+ +.+-..+.+. ++.+-++=--.|.--.
T Consensus 6 ~l~~l~il~~~~~~G~~i~~~l~lpiPGsV----iGmlLL~~~L~~~~ik~~-~v~~~a~~Ll~~m~llFVPa~VGi~~~ 80 (122)
T PRK01658 6 LLVQIALLYVFALVGTWIQEQLHLPIPGSI----IGIFLLLLLLSFKILKLK-WIELGAETLLAELPLFFIPSAVGVMNY 80 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHHHhCCcCHH-HHHHHHHHHHHHHHHHHHHhhhHHHHh
Confidence 44455667777778888887443 44442 333332222222111111 1222222222 2222222224566667
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010004 97 KKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLF 130 (520)
Q Consensus 97 ~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~ 130 (520)
.+.+++++.+++...+++|++...++|....++.
T Consensus 81 ~~ll~~~~~~il~~ivvsT~l~l~vtg~~~~~l~ 114 (122)
T PRK01658 81 GDFLSSKGISLFLVVVISTFVVMIVTGYLTQLLA 114 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999998888777666544
No 71
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=66.22 E-value=1.6e+02 Score=30.24 Aligned_cols=46 Identities=9% Similarity=0.239 Sum_probs=23.8
Q ss_pred hhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHH-HhHHHHHHhccch
Q 010004 269 GILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFI-AETFIFLYVGMDA 319 (520)
Q Consensus 269 gilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~F~~~G~~i 319 (520)
.++.+.+.|...++.+ -.+++.. +.+-+..-.+ +-.++|.-++-..
T Consensus 8 ~i~~ii~~G~~~~~~~--~l~~~~~---~~ls~lv~~~~lP~liF~~i~~~~ 54 (385)
T PF03547_consen 8 PIFLIILLGYLLGRFG--ILDPEAS---KGLSKLVFNVFLPALIFSSIANTD 54 (385)
T ss_pred HHHHHHHHHHHHHHhC--CCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566777887777653 2333332 3333333333 3346666666544
No 72
>PRK04972 putative transporter; Provisional
Probab=65.77 E-value=1.8e+02 Score=32.14 Aligned_cols=104 Identities=19% Similarity=0.226 Sum_probs=57.8
Q ss_pred cchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHH---HHHHhHHHHHHHHHHHHHHH
Q 010004 42 WVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKK---QFFHNFLTIMMFGVIGVFIS 118 (520)
Q Consensus 42 ~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~---~f~~~~~~il~la~~g~~i~ 118 (520)
.+-.+.+.+++|+++|.+- ...++ ...++.|.+-+|..|++--.. .++++..+...++++.+++.
T Consensus 36 ~LG~~~g~L~vgl~~g~~~-----------~~~~~-~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~~~~~~~~ 103 (558)
T PRK04972 36 QLGNSIGVLVVSLLLGQQH-----------FSINT-DALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSA 103 (558)
T ss_pred ecCcchHHHHHHHHHHhCC-----------CCCCh-HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3666778999999999531 11222 345677778888888887754 34444445555565555554
Q ss_pred HHHHHHHHHHhhhccCCCCCcH--HHHHHhhhhcccccHHHHHHhhhc
Q 010004 119 VSIITVGSWWLFPKLGFMGLSI--QDYLALGTIFSSTDTVCTLQILNQ 164 (520)
Q Consensus 119 ~~~i~~~~~~l~~~~~~~~~~~--~~all~GailsaTdpv~v~~il~~ 164 (520)
.++ ++.+.+++ ++++ ...++-|+.-++..-.++...+++
T Consensus 104 ~~~-~~~~~~~~------~~~~~~~~G~~aGa~T~tp~l~~a~~~~~~ 144 (558)
T PRK04972 104 LVI-ALGLGKLF------GWDIGLTAGMLAGSMTSTPVLVGAGDTLRH 144 (558)
T ss_pred HHH-HHHHHHHh------CCCHHHHHHHhhccccCcHHHHHHHHHHhc
Confidence 333 33333344 5554 334555555444443444444443
No 73
>PRK04972 putative transporter; Provisional
Probab=65.20 E-value=91 Score=34.36 Aligned_cols=127 Identities=12% Similarity=0.143 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHhhcC----cchhHHHHHHHHHHHHHHHHhhccccCccccccCh---hHHHHHhhHHHHHhhhhcCCH--
Q 010004 27 LCLCLIVGHLLEENR----WVNESITAILIGCVSGIIILSITKWKSSHILRFDE---ELFFIYLLPPIIFNAGFQVKK-- 97 (520)
Q Consensus 27 L~~~~~~~~~~~~~~----~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~---~~f~~~~L~~IlF~aG~~l~~-- 97 (520)
++++.++|.+--+.. .+-...+.+++|+++|.+-...+ ....+.+ ..+.++.|..-+...|++--.
T Consensus 390 i~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~~~~~~~-----~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f 464 (558)
T PRK04972 390 FIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGFLRANHP-----TFGYIPQGALNMVKEFGLMVFMAGVGLSAGSGI 464 (558)
T ss_pred HHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHhccccCC-----CceeeCHHHHHHHHHHhHHHHHHHHHHhhhHHH
Confidence 344455554432222 24457789999999996422111 1112222 135566666666666655432
Q ss_pred -HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhc-ccccHHHHHHhhhcCC
Q 010004 98 -KQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIF-SSTDTVCTLQILNQDE 166 (520)
Q Consensus 98 -~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~Gail-saTdpv~v~~il~~~~ 166 (520)
+.++++..+.+..+++.++++.++..+..++++ ++++. .+.|++. +-|+|.+.....+..+
T Consensus 465 ~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~------k~~~~--~~~G~~aG~~t~~~~l~~~~~~~~ 527 (558)
T PRK04972 465 NNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVL------RMNRA--LLFGAIMGARTCAPAMEIISDTAR 527 (558)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCHH--HHHHHHhCCCCCcHHHHHHHhhcC
Confidence 345666667777777778777777667777776 77776 5677776 4566666555544433
No 74
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=63.52 E-value=1.8e+02 Score=29.84 Aligned_cols=109 Identities=11% Similarity=0.095 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHHHH
Q 010004 23 FVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFH 102 (520)
Q Consensus 23 ~~~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f~~ 102 (520)
+.++...+.+.+...++ .++|. +.++..+++|...+.... ...++ |+....+.=..+--..|.++|...|++
T Consensus 190 ~~~l~~~~~~~g~l~~~-lr~Pa--~~ll~~l~l~a~v~~~~~----~~~~l-P~wl~~va~~~iG~~IG~~f~~~~l~~ 261 (352)
T COG3180 190 LLLLILAALLGGLLGKL-LRFPA--PTLLGPLLLGAIVHFGGG----ITIQL-PAWLLAVAQALIGALIGSRFDRSILRE 261 (352)
T ss_pred HHHHHHHHHHHHHHHHH-HcCCc--HHHHHHHHHHHHhhcccc----eeeeC-CHHHHHHHHHHHHHHHcccccHHHHHH
Confidence 33444444443444443 44775 556666677765554321 00122 345555555556667788888777766
Q ss_pred hHHHH--HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHH
Q 010004 103 NFLTI--MMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLA 145 (520)
Q Consensus 103 ~~~~i--l~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all 145 (520)
..+.. ..+..++..+.+...+....++. +.|+.++++
T Consensus 262 ~~r~~~~~~v~ii~l~~~~~~~a~ll~~~~------~i~~~ta~L 300 (352)
T COG3180 262 AKRLLPAILVSIIALMAIAAGMAGLLSWLT------GIDLNTAYL 300 (352)
T ss_pred hHhhcchHHHHHHHHHHHHHHHHHHHHHhc------CCCHHHHHH
Confidence 65542 23334444444455555555554 788876654
No 75
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=63.21 E-value=1.5e+02 Score=28.58 Aligned_cols=33 Identities=15% Similarity=0.106 Sum_probs=23.9
Q ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010004 95 VKKKQFFHNFLTIMMFGVIGVFISVSIITVGSW 127 (520)
Q Consensus 95 l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~ 127 (520)
-+++.+|||+++++.-...|.+++.+.....++
T Consensus 78 ~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~ 110 (226)
T TIGR00659 78 KQLPQIKKYWKEIILNVAVGSVIAIISGTLLAL 110 (226)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999988777887776554433333
No 76
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=62.09 E-value=59 Score=37.17 Aligned_cols=73 Identities=12% Similarity=0.078 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccchhh
Q 010004 249 ALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFD 321 (520)
Q Consensus 249 ~l~l~~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~ 321 (520)
.+.+++++++.+++|.+.++..+..+++|++++........+..-...+.....++.+.-.+.-+-.|+.+..
T Consensus 20 ~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~ 92 (810)
T TIGR00844 20 IFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPR 92 (810)
T ss_pred HHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 3566677888888888889999999999999887654333322100011222224444445555556666643
No 77
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=61.24 E-value=2.1e+02 Score=29.80 Aligned_cols=153 Identities=13% Similarity=0.189 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHH----hh-cCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHH
Q 010004 24 VAILCLCLIVGHLL----EE-NRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKK 98 (520)
Q Consensus 24 ~~lL~~~~~~~~~~----~~-~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~ 98 (520)
..++++|..+++++ ++ ...+|.-+..+++|+++-.+....... ....-.-+.+.+..|-+.+=.|=.+++.-
T Consensus 224 ~~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~---~v~~~~v~~ig~vsL~lflamALmSlkLw 300 (404)
T COG0786 224 LAIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKY---RVFRRAVDVIGNVSLSLFLAMALMSLKLW 300 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccc---cccHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 34444444455544 43 335899999999999888766543211 11111123466777777777777888988
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHH------hhhhcccccHHHHHHhhhcCCCc-c--
Q 010004 99 QFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLA------LGTIFSSTDTVCTLQILNQDETP-L-- 169 (520)
Q Consensus 99 ~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all------~GailsaTdpv~v~~il~~~~~~-~-- 169 (520)
++-+-..+.+.+-.++++..++..-+.++-++ +-++..+.+ +|.=.+||.-+-..++-++.+.+ +
T Consensus 301 eL~~l~lpl~viL~vQ~i~m~lfa~fvtfr~m------G~~YdAaV~~~G~~G~gLGATPtAianM~av~~k~g~S~kAf 374 (404)
T COG0786 301 ELADLALPLLVILAVQTIVMALFAIFVTFRLM------GKNYDAAVLAAGHCGFGLGATPTAIANMQAVTEKFGPSHKAF 374 (404)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHHHHh------CcchhHHHHhcccccCccCCcHHHHHhhhcchhhcCCCceee
Confidence 98888888777777777766554444444344 445555544 23333444444444444555544 3
Q ss_pred hhhhhhhhhhchhHHHH
Q 010004 170 LYSLVFGEGVVNDATSV 186 (520)
Q Consensus 170 l~~ll~gEs~lND~~ai 186 (520)
+-.=+.| +.+-|.+..
T Consensus 375 ~ivPiVG-Affid~ina 390 (404)
T COG0786 375 IVVPIVG-AFFIDIINA 390 (404)
T ss_pred EEeehHH-HHHHHHHHH
Confidence 2222455 777776663
No 78
>PRK01821 hypothetical protein; Provisional
Probab=60.89 E-value=1e+02 Score=27.00 Aligned_cols=106 Identities=13% Similarity=0.192 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCc--chhHHHHHHHHHHHHHHHHhhccccCccccccChhHHH-HHhhHHHHHhhhhcCC
Q 010004 20 ISLFVAILCLCLIVGHLLEENRW--VNESITAILIGCVSGIIILSITKWKSSHILRFDEELFF-IYLLPPIIFNAGFQVK 96 (520)
Q Consensus 20 l~~~~~lL~~~~~~~~~~~~~~~--lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~-~~~L~~IlF~aG~~l~ 96 (520)
++...++++.+...|..+.+... +|.++ +|+++=...+.....+.+ +.+-..+.+. ++.+-++==-.|.=-.
T Consensus 11 ~l~~l~ill~~~~~Ge~i~~~l~lpiPGsV----iGmlLLf~~L~~~~vk~~-~v~~~a~~LL~~m~LfFVPa~VGim~~ 85 (133)
T PRK01821 11 YLRAFVLIYACLYAGIFIASLLPITIPGSI----IGMLILFVLLALQILPAK-WVKPGCSLLIRYMALLFVPIGVGVMQY 85 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcHHH----HHHHHHHHHHHhCCcCHH-HHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34445566666777888877443 44432 333332222222111111 1222222222 2222222224455567
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010004 97 KKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLF 130 (520)
Q Consensus 97 ~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~ 130 (520)
.+.+++++.+++...+++|++..+++|....++.
T Consensus 86 ~~ll~~~~~~il~~ivvST~lvl~vtg~~~~~l~ 119 (133)
T PRK01821 86 YDLLRAQFGPIVVSCIVSTLVVLLVVGWSSHYVH 119 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999888999988877776666553
No 79
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=57.74 E-value=31 Score=39.53 Aligned_cols=74 Identities=22% Similarity=0.233 Sum_probs=49.2
Q ss_pred HHHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHH
Q 010004 78 LFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVC 157 (520)
Q Consensus 78 ~f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~ 157 (520)
....+++|.=....|.+.|.+.+.+ +.............. ++.+.+.-++. ++|+.+++.+|.+++.-.-+.
T Consensus 310 ~~~~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K-~l~t~~~sl~~------k~p~~~~l~l~~lm~~kgl~e 381 (769)
T KOG1650|consen 310 LVSGLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVK-LLSTLGTSLYC------KLPLRDSLALGLLMSTKGLVE 381 (769)
T ss_pred HHHHHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHh------cCchhHHHHHHHHHHhhhHHH
Confidence 3457889999999999999999998 443333222222222 22233333344 899999999999998776655
Q ss_pred HH
Q 010004 158 TL 159 (520)
Q Consensus 158 v~ 159 (520)
..
T Consensus 382 l~ 383 (769)
T KOG1650|consen 382 LI 383 (769)
T ss_pred HH
Confidence 43
No 80
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=57.01 E-value=2.3e+02 Score=28.90 Aligned_cols=176 Identities=15% Similarity=0.173 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHHHHHHhhccccCcccccc-ChhHHHHHhhHHHHHhhhhcCCHHHHHHh---HHHHHHHHHHHHHHHHH
Q 010004 45 ESITAILIGCVSGIIILSITKWKSSHILRF-DEELFFIYLLPPIIFNAGFQVKKKQFFHN---FLTIMMFGVIGVFISVS 120 (520)
Q Consensus 45 ~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~-~~~~f~~~~L~~IlF~aG~~l~~~~f~~~---~~~il~la~~g~~i~~~ 120 (520)
-...++.+|+.+|...-...+..+. .++ .-++-..+++...++--=.++|.++.++. .+...+.-+...++.-+
T Consensus 19 wv~l~i~~Gi~lG~~~p~~~~~l~~--~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii~P~ 96 (342)
T COG0798 19 WVFLAIAIGILLGVHFPGLAQLLGK--LEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWIIGPL 96 (342)
T ss_pred HHHHHHHHHHHHHhcccchhhhccc--ceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3566788888888533221111110 011 11223344555555555567777766544 44444444566666666
Q ss_pred HHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhh-hcC--CCcchhhhhhhhhhchhHHHHHHHHHHHHHHh
Q 010004 121 IITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQIL-NQD--ETPLLYSLVFGEGVVNDATSVVLFNAVQKIDV 197 (520)
Q Consensus 121 ~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il-~~~--~~~~l~~ll~gEs~lND~~aivlf~~~~~~~~ 197 (520)
.....++.+++ +.| .+..|.++-.-.|-....+. .+. ++++ +++ +--.+||...+++|........
T Consensus 97 lm~~la~~fl~-----~~p---ey~~GlILlglApC~aMVivw~~La~Gd~~-~tl--v~Va~n~l~qiv~y~~~~~~~l 165 (342)
T COG0798 97 LMFALAWFFLP-----DEP---EYRAGLILLGLAPCIAMVIVWSGLAKGDRE-LTL--VLVAFNSLLQIVLYAPLGKFFL 165 (342)
T ss_pred HHHHHHHHHhC-----CCH---HHHHHHHHHHhhhhHHHHHHHHhhccCcHh-hhh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 55555565553 344 55666666555555444433 333 2222 222 2356899999999986665533
Q ss_pred hcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010004 198 REL-NGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTL 237 (520)
Q Consensus 198 ~~~-~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~~~ 237 (520)
+.. ...++...+.+++. -+++=.+.|.++.+...|.
T Consensus 166 ~v~~~~v~~~~i~~Sv~l----yl~iPli~G~lTR~i~~k~ 202 (342)
T COG0798 166 GVISISVPFWTIAKSVLL----YLGIPLIAGVLTRYILIKK 202 (342)
T ss_pred hhccccccHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Confidence 321 12233333333332 2334445556666665543
No 81
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=56.47 E-value=1.2e+02 Score=28.29 Aligned_cols=29 Identities=17% Similarity=-0.041 Sum_probs=21.4
Q ss_pred hhhhhhhhhhchhHHHHHHH-HHHHHHHhh
Q 010004 170 LYSLVFGEGVVNDATSVVLF-NAVQKIDVR 198 (520)
Q Consensus 170 l~~ll~gEs~lND~~aivlf-~~~~~~~~~ 198 (520)
+.-++.--+++-|+.+...+ ..+.+...+
T Consensus 3 l~~lLtf~aG~iDa~~fl~~~~~F~s~~TG 32 (209)
T PF06912_consen 3 LALLLTFIAGFIDAYSFLALGGVFVSFMTG 32 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHhHH
Confidence 44456677899999999888 677666554
No 82
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=55.25 E-value=57 Score=24.16 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHH
Q 010004 24 VAILCLCLIVGHLLEENRWVNESITAILIGCVSGII 59 (520)
Q Consensus 24 ~~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~ 59 (520)
.++.-++..++..+-| .++|.+..++++|+++.++
T Consensus 21 G~~m~~S~~lS~~LT~-GrihGSAIAI~lGLvLAy~ 55 (60)
T PF03818_consen 21 GIIMWVSYWLSKKLTR-GRIHGSAIAIVLGLVLAYI 55 (60)
T ss_pred HHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHHHH
Confidence 3333444444444444 3599999999999999764
No 83
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=54.95 E-value=1.7e+02 Score=27.87 Aligned_cols=49 Identities=14% Similarity=0.309 Sum_probs=31.7
Q ss_pred HHHhhHHHHHhhhhcC--CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010004 80 FIYLLPPIIFNAGFQV--KKKQFFHNFLTIMMFGVIGVFISVSIITVGSWW 128 (520)
Q Consensus 80 ~~~~L~~IlF~aG~~l--~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~ 128 (520)
...+|.|-.-.-++-+ +++.+|||+++++.-.+.|.+++.+.....+++
T Consensus 51 l~~lLgPatVALAvPLY~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~ 101 (215)
T PF04172_consen 51 LSFLLGPATVALAVPLYRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARL 101 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445444444443 578999999999988888888776554444443
No 84
>PRK10711 hypothetical protein; Provisional
Probab=54.54 E-value=1.9e+02 Score=27.84 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=22.6
Q ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 010004 95 VKKKQFFHNFLTIMMFGVIGVFISVSIITVG 125 (520)
Q Consensus 95 l~~~~f~~~~~~il~la~~g~~i~~~~i~~~ 125 (520)
=+++.+|||+++++.-..+|.+++.+.....
T Consensus 79 ~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l 109 (231)
T PRK10711 79 EQLHQIRARWKSIISICFIGSVVAMVTGTAV 109 (231)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999887778887765443333
No 85
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=53.76 E-value=1.7e+02 Score=26.32 Aligned_cols=107 Identities=11% Similarity=0.097 Sum_probs=56.2
Q ss_pred chhHHHHHHHHHHHHHHHHhhccccCccccccC---hhHHHHHhhHHHHHhhhhcCCHH---HHHHhH-HHHHHHHHHHH
Q 010004 43 VNESITAILIGCVSGIIILSITKWKSSHILRFD---EELFFIYLLPPIIFNAGFQVKKK---QFFHNF-LTIMMFGVIGV 115 (520)
Q Consensus 43 lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~---~~~f~~~~L~~IlF~aG~~l~~~---~f~~~~-~~il~la~~g~ 115 (520)
+-.+.+.+++|+++|.+-.. ++ ....++ ++.+.++.|.+-++..|++--.+ .++++. ...+.++.+.+
T Consensus 21 LG~~~G~L~vgL~~G~~~~~---~p--~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~ 95 (154)
T TIGR01625 21 LGNAGGVLFVGLLLGHFGAT---GP--LTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALIT 95 (154)
T ss_pred ecccHHHHHHHHHHHhcccc---CC--cceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHH
Confidence 33467889999999964211 00 011111 23456777888788888877643 333332 12333334444
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhc-ccccHHHHHHhh
Q 010004 116 FISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIF-SSTDTVCTLQIL 162 (520)
Q Consensus 116 ~i~~~~i~~~~~~l~~~~~~~~~~~~~all~Gail-saTdpv~v~~il 162 (520)
++..++..+..++++ ++++. ...|.+- +-|+|.+.-...
T Consensus 96 ~~~~~~~~~~~~~~~------~~~~~--~~~G~~aGa~T~tpaL~aa~ 135 (154)
T TIGR01625 96 VVPTLLVAVALIKLL------RINYA--LTAGMLAGATTNTPALDAAN 135 (154)
T ss_pred HHHHHHHHHHHHHHh------CCCHH--HHHHHHhccccChHHHHHHH
Confidence 454455555555555 66653 5566655 334444433333
No 86
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=52.53 E-value=2.6e+02 Score=28.22 Aligned_cols=121 Identities=15% Similarity=0.103 Sum_probs=70.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHH---HHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHH
Q 010004 41 RWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFF---IYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFI 117 (520)
Q Consensus 41 ~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~---~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i 117 (520)
+++|. ++|++=+++|.++.-+.+.. .++=.|....|- .-.+...+|-.|-++|.|+-.+..++-..+-..=+.+
T Consensus 8 ~kiPg--g~m~vPl~lga~inTf~P~~-l~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~ 84 (312)
T PRK12460 8 KKIPG--GMMVVPLLIGALINTFFPQA-LEIGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGGVLTITKLGV 84 (312)
T ss_pred ccCCC--ceeHHHHHHHHHHHhccCcc-hhhCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhhhhhhHHHHH
Confidence 45775 55566667776555333221 122234444443 2346667899999999998777666654443333444
Q ss_pred HHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcCCCc
Q 010004 118 SVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETP 168 (520)
Q Consensus 118 ~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~~~~ 168 (520)
. .++++....+++.-| +-=...+.+=+.++.+....-.++..|++++
T Consensus 85 ~-~~~g~~~~~~~g~~g---~~Gls~laiiaa~~~~Ng~ly~al~~~yG~~ 131 (312)
T PRK12460 85 A-IVIGLLVGKFFGAEG---IFGLSGLAIVAAMSNSNGGLYAALMGEFGDE 131 (312)
T ss_pred H-HHHHHHHHHHcCccc---ccchHHHHHHHHHhcCcHHHHHHHHHHcCCH
Confidence 3 333444444454322 2223455666778888888888888888876
No 87
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=51.97 E-value=66 Score=33.30 Aligned_cols=186 Identities=15% Similarity=0.107 Sum_probs=95.2
Q ss_pred HhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHh
Q 010004 82 YLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQI 161 (520)
Q Consensus 82 ~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~i 161 (520)
.++-..++.-|.+.|.+.+++-++.-..++ +|.+-. ..+.-...+.+.+. ..+|...+ ..+.+.++..|.-....
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~-lG~v~q-~~i~pl~~f~~~~~--~~lP~~~~-ag~~Lvtc~~p~g~~~~ 191 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRPTPLA-LGFVPQ-YLIMPLLGFLLSKV--LLLPAALA-AGLLLVTCVSPGGGGNY 191 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCCccee-ehHHHH-HHHHHHHHHhhhhH--hhCCcccc-ceeEEEEeccCCcchhh
Confidence 556677899999999999998877644332 222222 22221212221110 02333333 67788899999888888
Q ss_pred hhcCCCcchhhhhhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-
Q 010004 162 LNQDETPLLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLY-F- 239 (520)
Q Consensus 162 l~~~~~~~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~~~~-~- 239 (520)
+..+..+.-..+...+...+-..++++.-.......+..-..+......+.+.....- +..|++.....++.. .
T Consensus 192 ~~~~~~~g~v~lsilmT~~stv~avi~~pl~s~~l~~~l~~~d~~~v~~s~~~vv~~p----l~lG~lL~~~~~k~t~~i 267 (371)
T KOG2718|consen 192 LTSKRLPGDVTLSILMTTISTVLAVILTPLLSILLGRALIPVDALGVIASILQVVGLP----LALGLLLNKWFPKRTVAI 267 (371)
T ss_pred heeecCCcchhhHHHHHHHHHHHHHHHHHHHHHhhchhhhcccchhhhhhhhHHhHHH----HHHHHHhcccCccceeee
Confidence 7766555445555566777776666554443333332222222223333332222222 444554443333221 0
Q ss_pred cCCCchhHH----------------HHHHHHHHHHHHHHHhhhcchhHHHHHHH
Q 010004 240 GKHSSVREI----------------ALMVLMAYLSYILAELLELSGILTVFFCG 277 (520)
Q Consensus 240 ~~~~~~~e~----------------~l~l~~~~~~~~~ae~~g~Sgilav~~~G 277 (520)
.+..+..+. .+.. ..|-.+..++.+++.|+++.+..+
T Consensus 268 ~~~~~~vsv~~t~l~~~~p~~~n~~~~~~-~~~~i~~~~~~l~l~g~l~~Y~~~ 320 (371)
T KOG2718|consen 268 EPGLPPVSVCLTILCLAFPPGENGYLFLF-FGYQILLLGAALPLAGFLAGYLLS 320 (371)
T ss_pred ecCCCchHHHhhhhhhcCChhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 001111111 1222 556666777777777777777666
No 88
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=49.98 E-value=3.2e+02 Score=30.18 Aligned_cols=106 Identities=17% Similarity=0.169 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHHHHHhhccccCccccccChh---HHHHHhhHHHHHhhhhcCCHH---HHHHhHHHHHHHHHHHHHHH
Q 010004 45 ESITAILIGCVSGIIILSITKWKSSHILRFDEE---LFFIYLLPPIIFNAGFQVKKK---QFFHNFLTIMMFGVIGVFIS 118 (520)
Q Consensus 45 ~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~---~f~~~~L~~IlF~aG~~l~~~---~f~~~~~~il~la~~g~~i~ 118 (520)
-..+.+++|+++|.+-...+ ....+++. .+.++.|..-++..|++--.+ .++++..+.+.++++-++++
T Consensus 417 ~~~g~l~~gl~~g~~~~~~~-----~~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~~ 491 (562)
T TIGR03802 417 TGGGALISGLVFGWLRSKHP-----TFGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTILP 491 (562)
T ss_pred hhHHHHHHHHHHHHhcccCC-----cceecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45678888888886422111 11123332 355677777777777776543 45666666677777777776
Q ss_pred HHHHHHHHHHhhhccCCCCCcHHHHHHhhhhc-ccccHHHHHHhhh
Q 010004 119 VSIITVGSWWLFPKLGFMGLSIQDYLALGTIF-SSTDTVCTLQILN 163 (520)
Q Consensus 119 ~~~i~~~~~~l~~~~~~~~~~~~~all~Gail-saTdpv~v~~il~ 163 (520)
.++.....++++ ++++. ...|++. +-|+|.+.....+
T Consensus 492 ~~~~~~~~~~~~------~~~~~--~~~G~~aG~~t~t~~l~~a~~ 529 (562)
T TIGR03802 492 LIITMLIGKYVL------KYDPA--LLLGALAGARTATPALGAVLE 529 (562)
T ss_pred HHHHHHHHHHHh------CCCHH--HHHHHhhccCCCcHHHHHHHH
Confidence 666555665565 66654 5566665 4455555444433
No 89
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=46.98 E-value=52 Score=33.07 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=32.8
Q ss_pred HHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHH
Q 010004 81 IYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVS 120 (520)
Q Consensus 81 ~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~ 120 (520)
.+.+|+.-|.-|..+|.+...+..-+-.++++..++++..
T Consensus 200 ~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~ 239 (314)
T PF03812_consen 200 PILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGI 239 (314)
T ss_pred CeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhH
Confidence 4668888999999999999999988888888777666543
No 90
>PRK03818 putative transporter; Validated
Probab=46.66 E-value=1.7e+02 Score=32.16 Aligned_cols=103 Identities=12% Similarity=0.041 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHhhccccCccccccCh---hHHHHHhhHHHHHhhhhcCCHH---HHHH-hHHHHHHHHHHHHHHH
Q 010004 46 SITAILIGCVSGIIILSITKWKSSHILRFDE---ELFFIYLLPPIIFNAGFQVKKK---QFFH-NFLTIMMFGVIGVFIS 118 (520)
Q Consensus 46 ~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~---~~f~~~~L~~IlF~aG~~l~~~---~f~~-~~~~il~la~~g~~i~ 118 (520)
..+.+++|+++|.+-.. ++ ....+.+ ..+.++.|.+-+...|++--.. .+++ .....+.++++.++++
T Consensus 403 ~~G~L~~gl~~g~~~~~---~~--~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~~ 477 (552)
T PRK03818 403 AGGPLIVALILGRIGSI---GK--LYWFMPPSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAVP 477 (552)
T ss_pred chHHHHHHHHHHhccCC---CC--ceeecCHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 56789999999953221 10 0011111 2355677777777777765433 2223 2444556666666666
Q ss_pred HHHHHHHHHHhhhccCCCCCcHHHHHHhhhhc-ccccHHHHHHh
Q 010004 119 VSIITVGSWWLFPKLGFMGLSIQDYLALGTIF-SSTDTVCTLQI 161 (520)
Q Consensus 119 ~~~i~~~~~~l~~~~~~~~~~~~~all~Gail-saTdpv~v~~i 161 (520)
.++...+.++++ ++++. ...|++. +-|+|.+....
T Consensus 478 ~~~~~~~~~~~~------~~~~~--~~~G~~aG~~t~tp~l~~a 513 (552)
T PRK03818 478 LLIVGILARMLA------KMNYL--TLCGMLAGSMTDPPALAFA 513 (552)
T ss_pred HHHHHHHHHHHH------cCCHH--HHHHHHhccCCCcHHHHHH
Confidence 555555556666 67765 5667666 34555554333
No 91
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=46.66 E-value=81 Score=31.62 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=31.9
Q ss_pred HHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHH
Q 010004 81 IYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVS 120 (520)
Q Consensus 81 ~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~ 120 (520)
.+..|+.-|.-|-.+|.+...+-.-+-.++++..++++..
T Consensus 200 ~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~ 239 (314)
T TIGR00793 200 QTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGI 239 (314)
T ss_pred CeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhH
Confidence 4667888899999999999999877777777777666543
No 92
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=46.21 E-value=2e+02 Score=28.91 Aligned_cols=136 Identities=12% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010004 50 ILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWL 129 (520)
Q Consensus 50 ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l 129 (520)
.+++.++|.+.....-..++. +.-.-+...+...|..++..|..++.++.+++++.+....+.=.++..++.......+
T Consensus 184 ~iia~i~Gl~~~~~~i~lP~~-l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i~~~~~~~~ 262 (321)
T TIGR00946 184 PLWAPLLSVILSLVGFKMPGL-ILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAVMAGISKLI 262 (321)
T ss_pred ChHHHHHHHHHHHHhhcCcHH-HHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcC--CCcchhhhhhhhhhchhHHHHHHHHHHHH
Q 010004 130 FPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQD--ETPLLYSLVFGEGVVNDATSVVLFNAVQK 194 (520)
Q Consensus 130 ~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~--~~~~l~~ll~gEs~lND~~aivlf~~~~~ 194 (520)
+++ ....-...+.++.=|+....++.+. ..++..+....-|.+=-.+.+.+...+.+
T Consensus 263 -------~l~-~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l~~ 321 (321)
T TIGR00946 263 -------GLR-GLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIILLG 321 (321)
T ss_pred -------CCC-hHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 93
>COG2985 Predicted permease [General function prediction only]
Probab=45.97 E-value=74 Score=33.98 Aligned_cols=133 Identities=18% Similarity=0.195 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh-----cCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhH---HHHHhhHHHH
Q 010004 17 VVPISLFVAILCLCLIVGHLLEE-----NRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEEL---FFIYLLPPII 88 (520)
Q Consensus 17 ~~~l~~~~~lL~~~~~~~~~~~~-----~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~---f~~~~L~~Il 88 (520)
.++++-+.+-+.++.++|.+=-. ..++-...+.+++|+++|.+-... + ....+++.. ..+ +-+.+
T Consensus 364 ~~~lLp~~ig~~LGvllGsIp~~~pg~~s~~LG~aGGpLivaLiLG~ig~iG---p--l~w~mP~~An~~lre--lGl~l 436 (544)
T COG2985 364 QVDLLPFAIGLGLGVLLGSIPFPLPGPGSFKLGNAGGPLIVALILGFIGAIG---P--LTWFMPPGALLALRE--LGLAL 436 (544)
T ss_pred eeccHHHHHHHHHHHhheeeEeccCCCceEeecccccHHHHHHHHHHhcccC---c--eEEEcChhHHHHHHH--HHHHH
Confidence 34455554445555555543110 012335667888999998653321 1 112222222 222 34566
Q ss_pred HhhhhcCCHH-HHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhc-ccccHHHHHHhh
Q 010004 89 FNAGFQVKKK-QFF----HNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIF-SSTDTVCTLQIL 162 (520)
Q Consensus 89 F~aG~~l~~~-~f~----~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~Gail-saTdpv~v~~il 162 (520)
|.||.-++.- .|+ ....++..++.+-++++.+.+++..++++ +++| ..+.|++. +-|||.+ ++..
T Consensus 437 FLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~vp~i~~~llg~~v~------kmn~--~~l~G~laGs~T~ppa-La~a 507 (544)
T COG2985 437 FLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTLVPVIIVFLLGRYVL------KMNW--LLLCGALAGSMTDPPA-LAFA 507 (544)
T ss_pred HHHhhccccccchHhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHH------hccH--HHHhhHHhcCCCChHH-HHHH
Confidence 7777777643 333 33445777888888888888888888877 6776 45678777 6688876 4444
Q ss_pred hcC
Q 010004 163 NQD 165 (520)
Q Consensus 163 ~~~ 165 (520)
++.
T Consensus 508 nd~ 510 (544)
T COG2985 508 NDA 510 (544)
T ss_pred hhc
Confidence 443
No 94
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=45.84 E-value=3.9e+02 Score=28.22 Aligned_cols=61 Identities=18% Similarity=0.304 Sum_probs=48.3
Q ss_pred HHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHh
Q 010004 79 FFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLAL 146 (520)
Q Consensus 79 f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~ 146 (520)
|.++.+..++--+=+.||+|-+.|.....+...+.+++...+..+.... ++ +.++.+++++
T Consensus 95 Fl~ffIa~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~-l~------G~~~~~~i~~ 155 (414)
T PF03390_consen 95 FLYFFIAALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGM-LF------GYSFKDAIFY 155 (414)
T ss_pred hHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh------CCCHHHHHHH
Confidence 7778888888888899999999999998888777777776655554444 45 8888888776
No 95
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=44.90 E-value=74 Score=28.86 Aligned_cols=68 Identities=16% Similarity=0.110 Sum_probs=40.8
Q ss_pred cCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhc
Q 010004 94 QVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQ 164 (520)
Q Consensus 94 ~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~ 164 (520)
++|+..-||+.+.+....+.+.++..+..+.....+|+.-+-+++.|- ++|.+++..-.++++.-+|+
T Consensus 5 ~idk~~YRk~~n~v~~~~v~~lai~sl~~s~llI~lFg~~~~~nf~~N---llGVil~~~~~~~~l~~~k~ 72 (165)
T PF11286_consen 5 EIDKERYRKHLNRVIVACVASLAILSLAFSQLLIALFGGESGGNFHWN---LLGVILGLLLTSALLRQLKT 72 (165)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeee---HHHHHHHHHHHHHHHHHHcc
Confidence 478888899888766655555555555666666666763222234443 45666665555566665543
No 96
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=44.50 E-value=84 Score=25.94 Aligned_cols=15 Identities=7% Similarity=0.341 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHhh
Q 010004 413 MITATIIIVLFTTLV 427 (520)
Q Consensus 413 i~~~t~~vVl~T~~v 427 (520)
++..++.++..|++|
T Consensus 20 LVGVv~~al~~SlLI 34 (102)
T PF15176_consen 20 LVGVVVTALVTSLLI 34 (102)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333344444444
No 97
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=42.72 E-value=3.2e+02 Score=26.38 Aligned_cols=33 Identities=24% Similarity=0.148 Sum_probs=24.5
Q ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010004 95 VKKKQFFHNFLTIMMFGVIGVFISVSIITVGSW 127 (520)
Q Consensus 95 l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~ 127 (520)
-+++.+||++++++.=.+.|.+++.+.....++
T Consensus 84 ~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~ 116 (232)
T PRK04288 84 KKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAK 116 (232)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999998888888877555443433
No 98
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=40.24 E-value=4.3e+02 Score=27.17 Aligned_cols=61 Identities=18% Similarity=0.334 Sum_probs=45.9
Q ss_pred HHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHh
Q 010004 79 FFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLAL 146 (520)
Q Consensus 79 f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~ 146 (520)
|.++.+..++--+=+.||++-+.|.+...+...+.+++...+..+.+ -.++ ++++.+++++
T Consensus 26 Fl~fyIa~LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lv-G~l~------G~~~~~~~~~ 86 (347)
T TIGR00783 26 FLYLYIACLIVGSILGMNRKLLLKALMRFIPPALIGMVLAVIVGILV-GTLF------GLGFDHSLMY 86 (347)
T ss_pred hHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHc------CCCHhHhhhe
Confidence 66777777888888899999999998888777777777755444333 4445 8888888776
No 99
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=39.72 E-value=1.3e+02 Score=30.28 Aligned_cols=138 Identities=14% Similarity=0.078 Sum_probs=74.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHH--HHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHH
Q 010004 41 RWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFF--IYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFIS 118 (520)
Q Consensus 41 ~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~--~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~ 118 (520)
+++|. ++|++=+++|.++.-+.+.....+=.|...+|. .-.+...+|-.|-++|.|+-.+..++-..+-..=+.+.
T Consensus 8 ~kIPG--G~MiVPLllga~inTf~P~~~~~~GgFTtalf~G~~~il~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~ 85 (314)
T TIGR00793 8 EKIPG--GMMLVPLFLGALCHTFAPGAGKYFGSFTNGLITGTVPILAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVA 85 (314)
T ss_pred ccCCC--ceeHHHHHHHHHHHhcCCchhhhcCchhHHHHcCcHHHHHHHHHHhCCeeeecccchhhhhcceeeeHHHHHH
Confidence 45775 455555666655443322211111223333332 23456668999999999886666555444333333333
Q ss_pred HHHHHHHHHHhhhccCCC-C-CcHHHHHHhhhhcccccHHHHHHhhhcCCCc-chhhhhhhhhhchhH
Q 010004 119 VSIITVGSWWLFPKLGFM-G-LSIQDYLALGTIFSSTDTVCTLQILNQDETP-LLYSLVFGEGVVNDA 183 (520)
Q Consensus 119 ~~~i~~~~~~l~~~~~~~-~-~~~~~all~GailsaTdpv~v~~il~~~~~~-~l~~ll~gEs~lND~ 183 (520)
.++++....+++.-|++ + +-=...+.+=+.++.+....-.++..|++++ +..... -.-+||+
T Consensus 86 -~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~~qyGd~~D~gA~~--i~sl~~G 150 (314)
T TIGR00793 86 -WVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAFV--LMSLESG 150 (314)
T ss_pred -HHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHHHHcCCHhhhhhhh--hhhhccC
Confidence 23344444455433211 0 1123456666778888999999999999876 333222 2345665
No 100
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=37.58 E-value=19 Score=37.27 Aligned_cols=101 Identities=13% Similarity=0.243 Sum_probs=9.9
Q ss_pred cchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHH-HHhhHHHHHhhhhcCCHHHHH---HhHHHHHHHHHHHHHH
Q 010004 42 WVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFF-IYLLPPIIFNAGFQVKKKQFF---HNFLTIMMFGVIGVFI 117 (520)
Q Consensus 42 ~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~-~~~L~~IlF~aG~~l~~~~f~---~~~~~il~la~~g~~i 117 (520)
+.+..++.+++|+++.. .+.. ++..+ .-+-+. .++.|......|.++|.+.+. +.+.....+.+...+.
T Consensus 233 g~s~~l~af~~Gl~~~~-----~~~~-~~~~~-~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 305 (380)
T PF00999_consen 233 GLSGILGAFIAGLILSN-----SPFA-ERLEE-KLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLG 305 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccceeeeeehcccc-----cccc-chhhh-cccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHh
Confidence 47777777777777761 1111 11111 111244 667777778999999998884 4444433333333222
Q ss_pred HHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHH
Q 010004 118 SVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTV 156 (520)
Q Consensus 118 ~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv 156 (520)
-...+... .... +.++.+++..|....+-..+
T Consensus 306 k~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~g~~ 337 (380)
T PF00999_consen 306 KFIGVYLA-SRLF------GIPWKEALFIGLGMLPRGEV 337 (380)
T ss_dssp ------------------------HHHHTTTTSS--HHH
T ss_pred hhceeehh-hhhc------ccccchhHHHHHhhcCccHH
Confidence 22222111 1122 78899999999777754444
No 101
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=34.30 E-value=4.1e+02 Score=25.17 Aligned_cols=62 Identities=23% Similarity=0.181 Sum_probs=35.3
Q ss_pred HHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcCCCcchhhhhhhhhhchhHHHH
Q 010004 123 TVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETPLLYSLVFGEGVVNDATSV 186 (520)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~~~~~l~~ll~gEs~lND~~ai 186 (520)
++..|.....+|- .......-++|-+.|+|.....++-..+ +.|+......+..++...+..
T Consensus 7 sf~gYia~r~~G~-r~Gl~ltg~~GGlvSSTA~t~~la~~~r-~~p~~~~~~~~~i~lA~~~m~ 68 (211)
T PF13194_consen 7 SFAGYIAVRLLGP-RRGLLLTGLLGGLVSSTATTVSLARRSR-ENPELSRLLAAGILLASAVMF 68 (211)
T ss_pred hHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHHHHHHHHHh-hCcchhHHHHHHHHHHHHHHH
Confidence 3344444333332 4466777889999999977766654322 244445555555555555444
No 102
>PF06610 DUF1144: Protein of unknown function (DUF1144); InterPro: IPR010574 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=33.60 E-value=1.5e+02 Score=25.96 Aligned_cols=60 Identities=13% Similarity=0.091 Sum_probs=38.0
Q ss_pred hhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010004 178 GVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTL 237 (520)
Q Consensus 178 s~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~~~ 237 (520)
-.+-|.+|.+.|+.=.-...--..+.+..+.+.......+.+.++|...|+...++-|..
T Consensus 81 ~~l~D~lAyvsFQsPVYaaIL~~vGA~~~qivtav~snavvs~~mG~~YG~FLd~cRrlF 140 (143)
T PF06610_consen 81 KNLADLLAYVSFQSPVYAAILWFVGADGDQIVTAVSSNAVVSMVMGRPYGYFLDYCRRLF 140 (143)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 456799999887732111000011223445666667778889999999999888876654
No 103
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=31.39 E-value=4.9e+02 Score=27.64 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHH
Q 010004 19 PISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIII 60 (520)
Q Consensus 19 ~l~~~~~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~ 60 (520)
+=++|+++-.++.++-..++|.+ +| .+=++++|+.+..+-
T Consensus 300 YgiLFI~LTF~~fflfE~~~~~~-iH-piQY~LVGlAl~lFY 339 (430)
T PF06123_consen 300 YGILFIGLTFLAFFLFELLSKLR-IH-PIQYLLVGLALVLFY 339 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCc-cc-HHHHHHHHHHHHHHH
Confidence 45566666666666777777654 66 457888998887543
No 104
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=30.13 E-value=3.7e+02 Score=23.37 Aligned_cols=39 Identities=13% Similarity=0.071 Sum_probs=30.7
Q ss_pred hhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010004 92 GFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLF 130 (520)
Q Consensus 92 G~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~ 130 (520)
|.--..+.+.+++.+++...+++|++....+|....++.
T Consensus 77 gVm~y~~~l~~~~~~Il~~~iiST~lv~~vtg~~~~~l~ 115 (128)
T COG1380 77 GVMNYFDLLAADGLPILVVIIISTLLVLLVTGWVVQLLI 115 (128)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333357788999999999999999998888887766653
No 105
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=29.46 E-value=4.1e+02 Score=27.53 Aligned_cols=71 Identities=11% Similarity=0.066 Sum_probs=31.7
Q ss_pred hhhcCCCcchhhhhhhhhhchhHHHHHHHHHHH-HHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010004 161 ILNQDETPLLYSLVFGEGVVNDATSVVLFNAVQ-KIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTL 237 (520)
Q Consensus 161 il~~~~~~~l~~ll~gEs~lND~~aivlf~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~~~ 237 (520)
.+||.+.+|+...... .++ |.+.+.|=..+- ....+.+-...... .+.....+..++-+.|.+.++++++.
T Consensus 262 llrEsGv~rLs~taqn-~l~-nivTifLGl~vG~t~~A~~FL~~~tl~----Il~LGlvAF~~~tagGvl~aK~mn~f 333 (399)
T TIGR03136 262 AIKEAQIEPYQNLLEK-TLT-YGSTLFLGLVLGVLCEASTLLDPRVSI----LLVLGITALLISGIGGVLGGWFVYWF 333 (399)
T ss_pred HHHHhCcHHHHHHHHH-HHH-HHHHHHHHHHhhhhccHHhhCChHHHH----HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3578877777766653 333 334444432222 12112221111112 22223334445555555666666555
No 106
>COG2985 Predicted permease [General function prediction only]
Probab=29.38 E-value=3.5e+02 Score=29.10 Aligned_cols=85 Identities=19% Similarity=0.252 Sum_probs=55.5
Q ss_pred HHHHhhHHHHHhhhhcCCHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccH
Q 010004 79 FFIYLLPPIIFNAGFQVKKK---QFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDT 155 (520)
Q Consensus 79 f~~~~L~~IlF~aG~~l~~~---~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdp 155 (520)
-+++.|.+-++-.|++--+. .|||..+.-..++++- +++....+...+.++ +. +.+.....+=||+-+...-
T Consensus 60 ~f~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli-vi~~~~~a~~l~k~~---~~-~~~~~~Gm~sGAlTsTP~L 134 (544)
T COG2985 60 HFELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI-VIAALLLAWVLHKLF---GI-DLGLIAGMFSGALTSTPGL 134 (544)
T ss_pred hhhhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHhhc---CC-CHHHhhhhhcccccCCchh
Confidence 44777888888888887644 5566666666666544 333333333333333 22 4555667788888888888
Q ss_pred HHHHHhhhcCCCc
Q 010004 156 VCTLQILNQDETP 168 (520)
Q Consensus 156 v~v~~il~~~~~~ 168 (520)
+++..++++.+.+
T Consensus 135 ~aa~~~L~~lg~~ 147 (544)
T COG2985 135 GAAQDILRELGAP 147 (544)
T ss_pred HHHHHHHHhhccc
Confidence 8889999988766
No 107
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=26.96 E-value=5.9e+02 Score=24.69 Aligned_cols=59 Identities=10% Similarity=0.243 Sum_probs=39.7
Q ss_pred HHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccchhh
Q 010004 257 LSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFD 321 (520)
Q Consensus 257 ~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~ 321 (520)
..-.+++.++.+.+++-..+|+.++....+-.++ .+..+.++.+.-.++....|+++..
T Consensus 6 ~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~------~~~~~~l~~igl~~llF~~Gl~~d~ 64 (273)
T TIGR00932 6 LAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISN------VEGVNHLAEFGVILLMFLIGLELDL 64 (273)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCC------hHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 3345677788888899999999998653321211 1245666667777778888888854
No 108
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=26.78 E-value=6.9e+02 Score=25.44 Aligned_cols=84 Identities=21% Similarity=0.388 Sum_probs=50.9
Q ss_pred HHHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHH-
Q 010004 78 LFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTV- 156 (520)
Q Consensus 78 ~f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv- 156 (520)
.+..++|--|=|.+|.++....+.....+++.--..|. ++-+..+.++.+++ +++..++..+++--.+.+.+
T Consensus 28 ~lsiyLLlaIGlkGG~~l~~~~~~~~~~~~~~~~~lg~-----liPl~~~~iLr~~~--~l~~~daaAiAAhYGSVSavT 100 (327)
T PF05982_consen 28 FLSIYLLLAIGLKGGVELAHSGLTALLLPLLAAVLLGI-----LIPLIAFPILRRLG--KLDRADAAAIAAHYGSVSAVT 100 (327)
T ss_pred HHHHHHHHHHhcccHHHHHcCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHcc--CCChhhHHHHHHHcCchHHHH
Confidence 45667778888999999988777664444333333333 33444555554433 67777777766665555554
Q ss_pred --HHHHhhhcCCCc
Q 010004 157 --CTLQILNQDETP 168 (520)
Q Consensus 157 --~v~~il~~~~~~ 168 (520)
+..+.+++.+.+
T Consensus 101 F~~a~~~L~~~gi~ 114 (327)
T PF05982_consen 101 FAAALAFLESQGIS 114 (327)
T ss_pred HHHHHHHHHHCCCC
Confidence 445566666644
No 109
>COG3329 Predicted permease [General function prediction only]
Probab=25.78 E-value=2.2e+02 Score=28.64 Aligned_cols=121 Identities=17% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcC--CHHHHHHhHHHHHH
Q 010004 32 IVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQV--KKKQFFHNFLTIMM 109 (520)
Q Consensus 32 ~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l--~~~~f~~~~~~il~ 109 (520)
+..|-+-+-..+...+.+++.|+++| .+.-.+.+..++---+-.|+-.|++.+.+-|++- +.+++||...-...
T Consensus 205 v~~~ell~Esflnpal~lllggl~iG----litGe~g~~vl~~F~~~lFqGvL~lflL~MGm~A~rrl~elrk~g~~~v~ 280 (372)
T COG3329 205 VKIWELLQESFLNPALVLLLGGLAIG----LITGEQGESVLKPFFDPLFQGVLCLFLLDMGMTAGRRLKELRKVGQGLVL 280 (372)
T ss_pred hhhHHHHHHHHcCchHHHHHHHHHHh----heeccCchhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCcceeh
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCcHH--H--HHHhhhhcccccHHHHHHhhh
Q 010004 110 FGVIGVFISVSIITVGSWWLFPKLGFMGLSIQ--D--YLALGTIFSSTDTVCTLQILN 163 (520)
Q Consensus 110 la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~--~--all~GailsaTdpv~v~~il~ 163 (520)
++++.=++..++.-...+.. +++.. . ..+++.+.++.+=.++-+.++
T Consensus 281 fgllaPil~g~ig~~lg~~a-------~y~tgfs~g~~vllAVlaaSaSyIa~PaalR 331 (372)
T COG3329 281 FGLLAPILHGFIGLLLGMIA-------GYPTGFSDGGVVLLAVLAASASYIAVPAALR 331 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHh-------cccccCCCcchHHHHHHhcchhhccccHHHh
No 110
>PF15179 Myc_target_1: Myc target protein 1
Probab=25.57 E-value=1.3e+02 Score=27.68 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010004 210 RDFLYLFSTSTILGVTAGLLTALVLKTLY 238 (520)
Q Consensus 210 ~~~l~~~~~s~~~G~~~G~~~~~l~~~~~ 238 (520)
...+..|.+++++|+++|-+...++.++.
T Consensus 19 ~~lIlaF~vSm~iGLviG~li~~LltwlS 47 (197)
T PF15179_consen 19 EDLILAFCVSMAIGLVIGALIWALLTWLS 47 (197)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677788888888877777777664
No 111
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=24.50 E-value=1.2e+02 Score=21.59 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=13.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q 010004 97 KKQFFHNFLTIMMFGVIGVFI 117 (520)
Q Consensus 97 ~~~f~~~~~~il~la~~g~~i 117 (520)
+++|+||...+..+.++..++
T Consensus 9 ~~~f~~nk~a~~gl~il~~~v 29 (56)
T PF12911_consen 9 WRRFRRNKLAVIGLIILLILV 29 (56)
T ss_pred HHHHHhCchHHHHHHHHHHHH
Confidence 577888877665555544443
No 112
>COG0679 Predicted permeases [General function prediction only]
Probab=24.35 E-value=4.1e+02 Score=26.65 Aligned_cols=128 Identities=11% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 010004 50 ILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVI-GVFISVSIITVGSWW 128 (520)
Q Consensus 50 ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~-g~~i~~~~i~~~~~~ 128 (520)
.+.+.++|.+.....-..++ ...-.-+.+.....|..++..|.+++.+..++....+...+.. -.++..+++....+.
T Consensus 170 ~i~a~i~g~~~~~~~i~lP~-~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~~~~~ 248 (311)
T COG0679 170 LIIALILGLLLNLLGISLPA-PLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPLVALLVAKL 248 (311)
T ss_pred HHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcCCCcchhhhhhhhhhchhHHHHH
Q 010004 129 LFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETPLLYSLVFGEGVVNDATSVV 187 (520)
Q Consensus 129 l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~~~~~l~~ll~gEs~lND~~aiv 187 (520)
+ +++-.+. --+++.+.-|.++.....-.+..+-.++..+...+.-..+++
T Consensus 249 ~-------~l~~~~~--~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~i~ist~ls~~ 298 (311)
T COG0679 249 L-------GLSGLAL--QVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLLSLL 298 (311)
T ss_pred c-------CCChHHH--HHHHHHhhCcHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHH
No 113
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=23.99 E-value=8.8e+02 Score=25.69 Aligned_cols=36 Identities=11% Similarity=-0.104 Sum_probs=21.3
Q ss_pred cC-CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010004 94 QV-KKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLF 130 (520)
Q Consensus 94 ~l-~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~ 130 (520)
++ |.+++.|-....+.+-...+.++++ +|.....++
T Consensus 63 ~l~~~~~lg~i~~~~~~~f~~tt~iA~~-lgl~~~~l~ 99 (428)
T PRK01663 63 GMGDMKKVGRVGGKALLYFEIVSTIALI-IGLIVVNVV 99 (428)
T ss_pred hCccccccchhHHHHHHHHHHHHHHHHH-HHHHHHHhc
Confidence 44 6678888777766665556666544 344444444
No 114
>PRK00523 hypothetical protein; Provisional
Probab=23.29 E-value=3.1e+02 Score=21.24 Aligned_cols=17 Identities=18% Similarity=0.100 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010004 216 FSTSTILGVTAGLLTAL 232 (520)
Q Consensus 216 ~~~s~~~G~~~G~~~~~ 232 (520)
.+.++++|++.|+..+.
T Consensus 11 ~i~~li~G~~~Gffiar 27 (72)
T PRK00523 11 GIPLLIVGGIIGYFVSK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456677777765443
No 115
>PRK01844 hypothetical protein; Provisional
Probab=23.26 E-value=3e+02 Score=21.35 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010004 216 FSTSTILGVTAGLLTAL 232 (520)
Q Consensus 216 ~~~s~~~G~~~G~~~~~ 232 (520)
.+.++++|++.|+..+.
T Consensus 10 ~I~~li~G~~~Gff~ar 26 (72)
T PRK01844 10 GVVALVAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566777777765443
No 116
>KOG4255 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.20 E-value=5.2e+02 Score=26.58 Aligned_cols=98 Identities=19% Similarity=0.190 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhc------cCCCCCCc
Q 010004 335 SLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFT------YSGVTSDP 408 (520)
Q Consensus 335 ~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~------~~~~~~~~ 408 (520)
++.+..+.+.++++--.-+|..+.++.++ .-..-...++|. |+ -|-..-.+|+.+-+ ..+....+
T Consensus 112 S~afl~L~F~LAivdc~SnVtFLPFMs~l-------pp~fL~afFvG~-GL-SaLlPsllaLaQGtg~~~C~~n~t~~r~ 182 (439)
T KOG4255|consen 112 SWAFLSLLFGLAIVDCTSNVTFLPFMSQL-------PPAFLNAFFVGM-GL-SALLPSLLALAQGTGRLECDLNGTPGRP 182 (439)
T ss_pred hHHHHHHHHHHHHHHhhccchhhhhhhhC-------ChHHHHHHHHhc-cH-HHHHHHHHHHHccCCceeecCCCCCCCC
Confidence 45555555555555555555544444322 122333455554 33 44444444443211 11211222
Q ss_pred chhhHHHHHHHHHHHHHhhhhhchHHHHHHhCC
Q 010004 409 DSATMITATIIIVLFTTLVFGFLTRPLVKYLLP 441 (520)
Q Consensus 409 ~~~~i~~~t~~vVl~T~~v~g~~~~~l~~~l~~ 441 (520)
.-+.+-..+++.+++.........=..+.++..
T Consensus 183 fP~rFs~s~FFl~l~~~~~~alaAF~vL~r~~~ 215 (439)
T KOG4255|consen 183 FPPRFSVSTFFLALFAFTCAALAAFFVLYRLGA 215 (439)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 334555555666655555433333333444433
No 117
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=22.46 E-value=8.2e+02 Score=24.78 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=35.2
Q ss_pred hHHHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010004 77 ELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLF 130 (520)
Q Consensus 77 ~~f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~ 130 (520)
+..-+.+||..++.-=++.|.|+.+|..++.+.. .+-..++.++.+...+..+
T Consensus 59 ~~v~n~llpamI~lmLlqcd~Rki~Klg~rll~i-fli~sv~~vlGfIl~yp~~ 111 (384)
T COG5505 59 DTVWNYLLPAMIPLMLLQCDVRKIFKLGRRLLFI-FLISSVGTVLGFILAYPLL 111 (384)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHhhcchhhHH-HHHHHHHHHHHHHHHHHHH
Confidence 4577889999999999999999999998875433 2333333333333444444
No 118
>PRK11715 inner membrane protein; Provisional
Probab=21.33 E-value=8.9e+02 Score=25.80 Aligned_cols=41 Identities=22% Similarity=0.369 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHH
Q 010004 19 PISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIIL 61 (520)
Q Consensus 19 ~l~~~~~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~ 61 (520)
+=++|+++-.++..+-..+++.+ +| .+=++++|+.+..+-+
T Consensus 306 YgiLFI~LTF~~fFlfE~~~~~~-iH-piQYlLVGlAl~lFYL 346 (436)
T PRK11715 306 YAILFIALTFAAFFLFELLKKLR-IH-PVQYLLVGLALVLFYL 346 (436)
T ss_pred HHHHHHHHHHHHHHHHHHhcCce-ec-HHHHHHHHHHHHHHHH
Confidence 44556666566666666666644 65 4678899988875433
No 119
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=20.77 E-value=7.9e+02 Score=25.09 Aligned_cols=38 Identities=18% Similarity=0.374 Sum_probs=21.7
Q ss_pred CCcHHHHHHhhhhcccccHHHHHHhhhcCCC-cchhhhhhhhhhchhHHHHHH
Q 010004 137 GLSIQDYLALGTIFSSTDTVCTLQILNQDET-PLLYSLVFGEGVVNDATSVVL 188 (520)
Q Consensus 137 ~~~~~~all~GailsaTdpv~v~~il~~~~~-~~l~~ll~gEs~lND~~aivl 188 (520)
..+..-++++| ..+||.+. +|+......| ++| .+.+.|
T Consensus 212 a~pLig~Lm~G------------nllrEsGv~~rl~~taqn~-l~n-ivTifL 250 (354)
T TIGR01109 212 ALPLVGMLMFG------------NLMRESGVVERLSKTASNE-LLN-IVTILL 250 (354)
T ss_pred hHHHHHHHHHH------------HHHHHhccHHHHHHHHHHH-HHH-HHHHHH
Confidence 34555666666 34688874 6887766533 333 344443
No 120
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=20.25 E-value=3.1e+02 Score=22.73 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhhcCc--chhHHHHHHHHHHHHH
Q 010004 25 AILCLCLIVGHLLEENRW--VNESITAILIGCVSGI 58 (520)
Q Consensus 25 ~lL~~~~~~~~~~~~~~~--lp~~~~~ll~Gll~G~ 58 (520)
+-++++..+|.++.++.. ..-++..+++|+++|.
T Consensus 54 ~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~ 89 (100)
T TIGR02230 54 IPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGC 89 (100)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH
Confidence 345667778888887321 2235566777777774
No 121
>PF03788 LrgA: LrgA family; InterPro: IPR005538 This family is represented by: YohJ, an inner membrane protein with four predicted transmembrane domains; the C terminus is located in the periplasm []. LrgA, a protein that has been hypothesised to export murein hydrolases []. In Staphylococcus aureus, lrg and cid operons encode homologous proteins that regulate extracellular murein hydrolase activity and penicillin tolerance [, ]. Since the proteins encoded by cidA and lrgA are so similar to the bacteriophage-encoded holin family of proteins, they are considered analogous []. The proteins in this entry are functionally uncharacterised.; GO: 0016021 integral to membrane
Probab=20.01 E-value=3.7e+02 Score=21.95 Aligned_cols=44 Identities=11% Similarity=0.049 Sum_probs=31.8
Q ss_pred HHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010004 81 IYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITV 124 (520)
Q Consensus 81 ~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~ 124 (520)
++.+-++=-..|.--..+.+++++.+++...+++|+++...++.
T Consensus 50 ~m~lfFvPa~VGi~~~~~~l~~~~~~i~~~i~vsT~l~~~~tg~ 93 (96)
T PF03788_consen 50 NMALFFVPAGVGIMEYFDLLAQEGLPILVVIVVSTLLVLAVTGW 93 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333456666778899999999999888998887666553
Done!