Query 010004
Match_columns 520
No_of_seqs 269 out of 1770
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 17:45:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010004.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010004hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.4 1.8E-12 6.2E-17 131.7 13.4 276 78-399 62-350 (388)
2 2l0e_A Sodium/hydrogen exchang 98.4 1.7E-08 5.9E-13 64.2 -1.9 31 139-169 2-32 (33)
3 2htg_A NHE-1, NHE1 isoform of 98.1 2.3E-07 8E-12 56.1 -1.2 23 168-190 4-26 (28)
4 2k3c_A TMIX peptide; membrane 98.0 5.7E-08 1.9E-12 62.1 -5.4 31 254-284 2-32 (33)
5 1y4e_A Sodium/hydrogen exchang 97.5 6.2E-06 2.1E-10 49.3 -1.8 25 74-98 2-26 (27)
6 2kbv_A Sodium/hydrogen exchang 97.3 7.6E-05 2.6E-09 45.2 1.4 23 375-398 2-24 (28)
7 3zux_A Transporter, ASBTNM; tr 93.8 5.6 0.00019 39.2 29.3 26 79-104 44-69 (332)
8 2zy9_A Mg2+ transporter MGTE; 38.7 1.4E+02 0.005 30.4 10.4 31 162-193 435-466 (473)
9 2bec_B Sodium/hydrogen exchang 30.9 1.1 3.7E-05 30.0 -4.9 33 437-475 2-38 (43)
10 4dve_A Biotin transporter BIOY 19.4 3.6E+02 0.012 24.0 7.9 14 45-58 51-64 (198)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.39 E-value=1.8e-12 Score=131.66 Aligned_cols=276 Identities=14% Similarity=0.166 Sum_probs=180.7
Q ss_pred HHHHHhhHHHHHhhhhcCCHHHH----HHhHH--HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcc
Q 010004 78 LFFIYLLPPIIFNAGFQVKKKQF----FHNFL--TIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFS 151 (520)
Q Consensus 78 ~f~~~~L~~IlF~aG~~l~~~~f----~~~~~--~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~Gails 151 (520)
+.-+.++.+.+|.+|+|+|.+.+ ++..+ .....|+.|+++++.+ |+.+ +.+..++..-+++..
T Consensus 62 windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~i-----y~~~------~~~~~~~~~gw~ip~ 130 (388)
T 1zcd_A 62 WINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALL-----YLAF------NYADPITREGWAIPA 130 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH-----HGGG------CCSSTTHHHHTSSSS
T ss_pred HHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH-----HHHH------hcCChhhhhhhHHHH
Confidence 46678899999999999988766 44433 3467788888887654 3444 445556778899999
Q ss_pred cccHHHHHHhhhcCC--Cc-chhhhhhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010004 152 STDTVCTLQILNQDE--TP-LLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGL 228 (520)
Q Consensus 152 aTdpv~v~~il~~~~--~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~ 228 (520)
+||-+.++.++...+ .| .++..+.+-+++||..++++..++.+ ++.+ ...... .+...
T Consensus 131 ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~~~---~~~l~~-------------~~~~~ 191 (388)
T 1zcd_A 131 ATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---NDLS---MASLGV-------------AAVAI 191 (388)
T ss_dssp CCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CCCC---HHHHHH-------------HHHHH
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CCcc---HHHHHH-------------HHHHH
Confidence 999999999998864 55 58899999999999999999887743 2222 111110 01111
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHH-HHH
Q 010004 229 LTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMS-FIA 307 (520)
Q Consensus 229 ~~~~l~~~~~~~~~~~~~e~~l~l~~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ 307 (520)
...+..+|.. .+.....+.+ ....++.++..|.+.++|.|++|+++.+...++. ...++.++..+.+. +++
T Consensus 192 ~~~~~l~r~~----v~~~~~y~~l--gl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~--~~~~~le~~l~p~v~~~i 263 (388)
T 1zcd_A 192 AVLAVLNLCG----ARRTGVYILV--GVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGR--SPAKRLEHVLHPWVAYLI 263 (388)
T ss_dssp HHHHHHHHTT----CCCTHHHHHH--HHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSS--CHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHhc----chhHHHHHHH--HHHHHHHHHHhCccHHHHHHHHHHhccCCCccCC--CHHHHHHHHHHHHHHHHH
Confidence 1123333331 1122222222 3356777899999999999999999997543221 22344555555544 688
Q ss_pred hHHH-HHHhccchhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cCCCCCCCccchhhhee-cC
Q 010004 308 ETFI-FLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMN-SHRSPSISFNHQVVIWW-AG 384 (520)
Q Consensus 308 ~~~~-F~~~G~~i~~~~~w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~i~~-~G 384 (520)
-++| |...|+++.... .+.. .... ...+.+..+++|.++++..+++..+.+ -+.+++.+|+|..-++. +|
T Consensus 264 lPlFaFanaGv~l~~~~-~~~l----~~~~--~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~g 336 (388)
T 1zcd_A 264 LPLFAFANAGVSLQGVT-LDGL----TSIL--PLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCG 336 (388)
T ss_dssp HHHHHHHHCCCCCSSSC-CCTH----HHHS--STTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTT
T ss_pred HHHHHHHhcCeeecccc-hhhc----cChH--HHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhc
Confidence 8999 999999994311 0000 0011 112233458999999888787764332 13356899999977776 46
Q ss_pred CchhHHHHHHhhhhh
Q 010004 385 LMRGAVSIALAFKQF 399 (520)
Q Consensus 385 lpRGav~~aLa~~~~ 399 (520)
.|+.+++..+...+
T Consensus 337 -igftmsL~Ia~laf 350 (388)
T 1zcd_A 337 -IGFTMSIFIASLAF 350 (388)
T ss_dssp -CCHHHHHHHHHHHS
T ss_pred -cchHHHHHHHHHhc
Confidence 48999999887654
No 2
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=98.37 E-value=1.7e-08 Score=64.23 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=27.7
Q ss_pred cHHHHHHhhhhcccccHHHHHHhhhcCCCcc
Q 010004 139 SIQDYLALGTIFSSTDTVCTLQILNQDETPL 169 (520)
Q Consensus 139 ~~~~all~GailsaTdpv~v~~il~~~~~~~ 169 (520)
+|..|++|||++|+|||+++++++|+.+.|+
T Consensus 2 ~~~~~llfGAiis~TDpVavlaif~~~~vp~ 32 (33)
T 2l0e_A 2 KKKDNLLFGSIISAVDPVAVLAVFEEIHKKK 32 (33)
T ss_dssp CCCCCCTTHHHHTTCCHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHccCCChHHHHHHHHHcCCCC
Confidence 4566899999999999999999999998775
No 3
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic}
Probab=98.08 E-value=2.3e-07 Score=56.06 Aligned_cols=23 Identities=57% Similarity=0.886 Sum_probs=21.4
Q ss_pred cchhhhhhhhhhchhHHHHHHHH
Q 010004 168 PLLYSLVFGEGVVNDATSVVLFN 190 (520)
Q Consensus 168 ~~l~~ll~gEs~lND~~aivlf~ 190 (520)
++++.+++|||++||++++++|+
T Consensus 4 ~~L~~lvfGESllNDavaiVlf~ 26 (28)
T 2htg_A 4 ELLHILVFGESLLNDAVTVVLYK 26 (28)
T ss_dssp STTHHHHTTTTTTTTTTTTTTTT
T ss_pred ceEEEEEEeeeeecccEEEEEEe
Confidence 47999999999999999999985
No 4
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=97.99 E-value=5.7e-08 Score=62.10 Aligned_cols=31 Identities=35% Similarity=0.682 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhhcchhHHHHHHHhhhcccc
Q 010004 254 MAYLSYILAELLELSGILTVFFCGIFMSHYA 284 (520)
Q Consensus 254 ~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~ 284 (520)
++|++|.+||.+|+||++|+++||++++||.
T Consensus 2 ~~y~~Yl~AE~~~lSGIlavv~~Gi~~~~y~ 32 (33)
T 2k3c_A 2 KSYMAYLSAELFHLSGIMALIASGVVMRPKK 32 (33)
T ss_dssp CCSTTTGGGSSSTTTTTTTTTTTTSCCCCCC
T ss_pred hhHHHHHHHHHhCcChHHHHHHHHHHHhhcc
Confidence 4688999999999999999999999999885
No 5
>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens}
Probab=97.47 E-value=6.2e-06 Score=49.34 Aligned_cols=25 Identities=40% Similarity=1.042 Sum_probs=22.9
Q ss_pred cChhHHHHHhhHHHHHhhhhcCCHH
Q 010004 74 FDEELFFIYLLPPIIFNAGFQVKKK 98 (520)
Q Consensus 74 ~~~~~f~~~~L~~IlF~aG~~l~~~ 98 (520)
+++++|+.++||||+|++||+|+.|
T Consensus 2 ~~~~~FF~~LLPPII~~aGy~l~~r 26 (27)
T 1y4e_A 2 LQSDVFFLFLLPPIILDAGYFLPLR 26 (27)
T ss_dssp CCSCSSHHHHSCCSSHHHHTTGGGG
T ss_pred CccceeeeeccCccEeeccccccCC
Confidence 5788999999999999999999876
No 6
>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic}
Probab=97.29 E-value=7.6e-05 Score=45.20 Aligned_cols=23 Identities=35% Similarity=0.704 Sum_probs=20.9
Q ss_pred cchhhheecCCchhHHHHHHhhhh
Q 010004 375 NHQVVIWWAGLMRGAVSIALAFKQ 398 (520)
Q Consensus 375 ~~~~~i~~~GlpRGav~~aLa~~~ 398 (520)
++|++|+|+|+ ||+++++|++..
T Consensus 2 ~~Q~i~~~~GL-RGAvafaL~~~l 24 (28)
T 2kbv_A 2 KDQFIIAYGGL-RGAIAFSLGYLL 24 (28)
T ss_dssp CHHHHTTTTSS-CHHHHHHHHHHH
T ss_pred CceeEEEeecc-hHHHHHHHHHhc
Confidence 57999999998 999999999865
No 7
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=93.81 E-value=5.6 Score=39.20 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=21.4
Q ss_pred HHHHhhHHHHHhhhhcCCHHHHHHhH
Q 010004 79 FFIYLLPPIIFNAGFQVKKKQFFHNF 104 (520)
Q Consensus 79 f~~~~L~~IlF~aG~~l~~~~f~~~~ 104 (520)
....++..++|..|.+++.+++++..
T Consensus 44 ~i~~~l~~~mf~~G~~l~~~~l~~~~ 69 (332)
T 3zux_A 44 YIPWLLGIIMFGMGLTLKPSDFDILF 69 (332)
T ss_dssp GHHHHHHHHHHHHHHHCCGGGGHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 34568899999999999999998443
No 8
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=38.68 E-value=1.4e+02 Score=30.42 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=19.2
Q ss_pred hhcCC-CcchhhhhhhhhhchhHHHHHHHHHHH
Q 010004 162 LNQDE-TPLLYSLVFGEGVVNDATSVVLFNAVQ 193 (520)
Q Consensus 162 l~~~~-~~~l~~ll~gEs~lND~~aivlf~~~~ 193 (520)
+++.+ .|-+.+--+ -+.++|.++++.|-.+.
T Consensus 435 ~~~~~~DPa~~s~p~-itt~~D~~g~~~~~~~a 466 (473)
T 2zy9_A 435 LRRLGVDPALVSNPL-VATLSDVTGLLIYLSVA 466 (473)
T ss_dssp HHHHTCCGGGSCHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCccccccch-HHHHHHHHHHHHHHHHH
Confidence 45555 555444333 36779999988776443
No 9
>2bec_B Sodium/hydrogen exchanger 1; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens} PDB: 2e30_B
Probab=30.87 E-value=1.1 Score=30.04 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=16.1
Q ss_pred HHhCCCCCCCCCCCCCCCCCCCccCCCCcccCC----cccccc
Q 010004 437 KYLLPHPQHATNNSCREPKSPNEDMNLPLLSFD----ESTATN 475 (520)
Q Consensus 437 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 475 (520)
++|..++++..+ .+.+|++|.+.+||. ||++|+
T Consensus 2 ~~L~Vkr~~~~~------~t~~e~ih~~~~dhlmaGiEdi~G~ 38 (43)
T 2bec_B 2 DLLAVKKKQETK------RSINEEIHTQFLDHLLTGIEDICGH 38 (43)
T ss_dssp ------------------CCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cceeeecccccc------ccHHHHHhhhhhhhhhhchHhhcCC
Confidence 455555443322 355688999988874 888875
No 10
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=19.42 E-value=3.6e+02 Score=24.02 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHH
Q 010004 45 ESITAILIGCVSGI 58 (520)
Q Consensus 45 ~~~~~ll~Gll~G~ 58 (520)
.+...+++|+++|+
T Consensus 51 Qtl~V~LaG~~LG~ 64 (198)
T 4dve_A 51 QNMGIMMAGGLLGP 64 (198)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCh
Confidence 56888999999996
Done!