Query 010004
Match_columns 520
No_of_seqs 269 out of 1770
Neff 8.3
Searched_HMMs 13730
Date Mon Mar 25 17:46:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010004.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010004hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 70.1 9.1 0.00066 31.7 8.7 32 161-193 136-168 (173)
2 d2e74e1 f.23.24.1 (E:1-32) Pet 40.1 26 0.0019 19.2 4.1 23 209-231 3-25 (32)
3 d1sr9a1 a.5.7.1 (A:437-491) 2- 15.1 20 0.0014 23.5 0.5 15 494-508 41-55 (55)
4 d1u7ga_ f.44.1.1 (A:) Ammonium 9.0 6E+02 0.043 22.6 9.5 17 266-282 317-333 (383)
5 d1r3jc_ f.14.1.1 (C:) Potassiu 9.0 2.8E+02 0.02 19.5 5.6 40 199-238 59-98 (103)
6 d2nwwa1 f.49.1.1 (A:12-416) Pr 8.3 6.3E+02 0.046 22.3 18.9 88 44-131 3-98 (405)
7 d1wira_ g.37.1.5 (A:) Protein 6.9 39 0.0029 25.8 -0.4 14 497-512 82-95 (121)
8 d2axtl1 f.23.31.1 (L:1-37) Pho 5.1 1.1E+02 0.0082 17.5 1.0 15 269-283 20-34 (37)
9 d2e74g1 f.23.26.1 (G:9-35) Pet 4.7 1.4E+02 0.01 15.7 1.0 18 269-286 4-21 (27)
10 d1t1ja_ c.23.14.2 (A:) Hypothe 4.5 85 0.0062 23.1 0.2 22 488-509 56-77 (119)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=70.11 E-value=9.1 Score=31.73 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=20.9
Q ss_pred hhhcCC-CcchhhhhhhhhhchhHHHHHHHHHHH
Q 010004 161 ILNQDE-TPLLYSLVFGEGVVNDATSVVLFNAVQ 193 (520)
Q Consensus 161 il~~~~-~~~l~~ll~gEs~lND~~aivlf~~~~ 193 (520)
++|+.+ +|...+--+ .+.+||.++++.|-.+.
T Consensus 136 ll~klg~DPA~aS~P~-itti~Di~g~~iyf~iA 168 (173)
T d2yvxa3 136 LLRRLGVDPALVSNPL-VATLSDVTGLLIYLSVA 168 (173)
T ss_dssp HHHHTSCCGGGSCSTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCChhhhhhhH-HHHHHHHHHHHHHHHHH
Confidence 456665 565544333 47789999998876543
No 2
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=40.09 E-value=26 Score=19.17 Aligned_cols=23 Identities=17% Similarity=0.518 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010004 209 FRDFLYLFSTSTILGVTAGLLTA 231 (520)
Q Consensus 209 l~~~l~~~~~s~~~G~~~G~~~~ 231 (520)
++..++..+.....|+++|.+.+
T Consensus 3 lgavfyivfialffgiavgiifa 25 (32)
T d2e74e1 3 LGAVFYIVFIALFFGIAVGIIFA 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeHHHHHHHHHHHHHhhheee
Confidence 34556666677777888877654
No 3
>d1sr9a1 a.5.7.1 (A:437-491) 2-isopropylmalate synthase LeuA, communication domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=15.05 E-value=20 Score=23.52 Aligned_cols=15 Identities=27% Similarity=0.888 Sum_probs=13.2
Q ss_pred hhhHHhhhhcccccc
Q 010004 494 IHSFWRRFDDTYMRP 508 (520)
Q Consensus 494 ~~~~w~~~d~~~~~p 508 (520)
..+.|+-|.++|+.|
T Consensus 41 ~~~I~~~F~~~Yl~p 55 (55)
T d1sr9a1 41 PKEMWDAFAEEYLAP 55 (55)
T ss_dssp HHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhcCC
Confidence 458899999999998
No 4
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=9.00 E-value=6e+02 Score=22.58 Aligned_cols=17 Identities=29% Similarity=0.634 Sum_probs=13.3
Q ss_pred hcchhHHHHHHHhhhcc
Q 010004 266 ELSGILTVFFCGIFMSH 282 (520)
Q Consensus 266 g~Sgilav~~~Gl~~~~ 282 (520)
+..|+++.+++|+.-+.
T Consensus 317 g~~Gi~G~l~~glfa~~ 333 (383)
T d1u7ga_ 317 GVCGIVGCIMTGIFAAS 333 (383)
T ss_dssp HHHHHHHHHHHHHHTSG
T ss_pred hhhHHHHHHHHHHhcCc
Confidence 45789999999988653
No 5
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=8.95 E-value=2.8e+02 Score=19.49 Aligned_cols=40 Identities=10% Similarity=0.067 Sum_probs=25.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010004 199 ELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLY 238 (520)
Q Consensus 199 ~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~~~~ 238 (520)
+..+.+...-+...+..+.|-.++++..+.+.....++..
T Consensus 59 Di~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 98 (103)
T d1r3jc_ 59 DLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 98 (103)
T ss_dssp SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333333445566667777788888888887776554
No 6
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=8.27 E-value=6.3e+02 Score=22.31 Aligned_cols=88 Identities=15% Similarity=0.281 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhcccc-CccccccChhHHH---HHhhHHHHHhh---h-hcCCHHHHHHhHHHHHHHHHHHH
Q 010004 44 NESITAILIGCVSGIIILSITKWK-SSHILRFDEELFF---IYLLPPIIFNA---G-FQVKKKQFFHNFLTIMMFGVIGV 115 (520)
Q Consensus 44 p~~~~~ll~Gll~G~~~~~~~~~~-~~~~~~~~~~~f~---~~~L~~IlF~a---G-~~l~~~~f~~~~~~il~la~~g~ 115 (520)
...+..+++|+++|.........+ ...+.+.-.|+|. +...+|++|.+ | -+++.++..|...+.+.+-...+
T Consensus 3 ~rili~lv~Gi~~G~~~~~~~~~~~~~~~l~~~g~lFi~lL~m~v~PLIf~sii~gi~~L~~~~~gkl~~~ti~~~l~tt 82 (405)
T d2nwwa1 3 QKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTS 82 (405)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTTHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTCSCTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcchHHHHHHHHHHHHH
Confidence 456677888888886554321110 0112222234544 34455555532 2 24555667777766666666666
Q ss_pred HHHHHHHHHHHHHhhh
Q 010004 116 FISVSIITVGSWWLFP 131 (520)
Q Consensus 116 ~i~~~~i~~~~~~l~~ 131 (520)
+++..+.....+.+.|
T Consensus 83 ~iA~~igl~~~~~~~p 98 (405)
T d2nwwa1 83 AFAVTLGIIMARLFNP 98 (405)
T ss_dssp HHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHhcc
Confidence 6654433333333334
No 7
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.92 E-value=39 Score=25.84 Aligned_cols=14 Identities=36% Similarity=0.987 Sum_probs=11.0
Q ss_pred HHhhhhccccccccCC
Q 010004 497 FWRRFDDTYMRPVFGG 512 (520)
Q Consensus 497 ~w~~~d~~~~~p~~~~ 512 (520)
.|. |++||||++-.
T Consensus 82 ~wd--dd~YL~Pvled 95 (121)
T d1wira_ 82 PWE--KDEYLKPVLED 95 (121)
T ss_dssp TTC--CHHHHSCSSSS
T ss_pred cCC--CcccccccCCC
Confidence 364 89999998765
No 8
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.15 E-value=1.1e+02 Score=17.51 Aligned_cols=15 Identities=27% Similarity=0.722 Sum_probs=8.3
Q ss_pred hhHHHHHHHhhhccc
Q 010004 269 GILTVFFCGIFMSHY 283 (520)
Q Consensus 269 gilav~~~Gl~~~~~ 283 (520)
|++-+|+.|+.+++|
T Consensus 20 GlLlifvl~vLFssY 34 (37)
T d2axtl1 20 GLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445556666665544
No 9
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.66 E-value=1.4e+02 Score=15.66 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=11.5
Q ss_pred hhHHHHHHHhhhcccccc
Q 010004 269 GILTVFFCGIFMSHYAWH 286 (520)
Q Consensus 269 gilav~~~Gl~~~~~~~~ 286 (520)
|++-+..+|+..+.|..+
T Consensus 4 gli~~tl~glf~aayqqy 21 (27)
T d2e74g1 4 GLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred eehHHHHHHHHHHHHHHh
Confidence 455666777777766543
No 10
>d1t1ja_ c.23.14.2 (A:) Hypothetical protein PA1492 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.52 E-value=85 Score=23.14 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=17.6
Q ss_pred cCCchhhhhHHhhhhccccccc
Q 010004 488 DRPVYTIHSFWRRFDDTYMRPV 509 (520)
Q Consensus 488 ~~~~~~~~~~w~~~d~~~~~p~ 509 (520)
.++.+.+++.|--.|.-||+-+
T Consensus 56 ~~d~~~~g~~Wa~vd~~fm~~~ 77 (119)
T d1t1ja_ 56 ELDRAAIGRLWAPVDAFYMDHL 77 (119)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHC
T ss_pred ccChHHHhhhhhhhhHHHHHHh
Confidence 3455678999999999999863
Done!