RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 010004
         (520 letters)



>d2e2dc1 b.40.3.1 (C:1001-1180) TIMP-2 {Cow (Bos taurus) [TaxId:
           9913]}
          Length = 180

 Score = 28.0 bits (62), Expect = 2.2
 Identities = 8/44 (18%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 259 YILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAM 302
           Y++A   E +G + +  C   +    W  ++ + + +  H + M
Sbjct: 84  YLIAGKAEGNGNMHITLCDFIVP---WDTLSATQKKSLNHRYQM 124


>d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis
           [TaxId: 632]}
          Length = 141

 Score = 26.1 bits (57), Expect = 6.6
 Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 149 IFSSTDTVCTLQILNQDETP-LLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALR 207
           I+        + + N  + P L+ S ++ E    +  S   F     +   +   + +LR
Sbjct: 16  IYPLDAAGVMVSVKNTQDYPVLIQSRIYDEN--KEKESEDPFVVTPPLFRLDAKQQNSLR 73

Query: 208 IFR 210
           I +
Sbjct: 74  IAQ 76


>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 128

 Score = 25.6 bits (56), Expect = 8.7
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 149 IFSSTDTVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRI 208
           I+ +     TL + N    P+L          +     ++   + +++    N ++ LRI
Sbjct: 15  IYHAGTAGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEA---NQQSQLRI 71

Query: 209 FR 210
            R
Sbjct: 72  VR 73


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.140    0.424 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,897,171
Number of extensions: 86283
Number of successful extensions: 235
Number of sequences better than 10.0: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 25
Length of query: 520
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 431
Effective length of database: 1,185,626
Effective search space: 511004806
Effective search space used: 511004806
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.4 bits)