Citrus Sinensis ID: 010005
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 520 | 2.2.26 [Sep-21-2011] | |||||||
| A9X4U2 | 561 | 3beta-hydroxysteroid-dehy | yes | no | 0.930 | 0.862 | 0.592 | 1e-166 | |
| Q67ZE1 | 564 | 3beta-hydroxysteroid-dehy | no | no | 0.942 | 0.868 | 0.448 | 1e-116 | |
| Q9FX01 | 439 | 3beta-hydroxysteroid-dehy | no | no | 0.813 | 0.963 | 0.421 | 3e-91 | |
| Q5PPL3 | 362 | Sterol-4-alpha-carboxylat | yes | no | 0.644 | 0.925 | 0.372 | 2e-55 | |
| Q9R1J0 | 362 | Sterol-4-alpha-carboxylat | yes | no | 0.644 | 0.925 | 0.370 | 6e-55 | |
| Q3ZBE9 | 356 | Sterol-4-alpha-carboxylat | yes | no | 0.642 | 0.938 | 0.368 | 1e-52 | |
| Q15738 | 373 | Sterol-4-alpha-carboxylat | yes | no | 0.634 | 0.884 | 0.363 | 2e-50 | |
| A8DZE7 | 387 | Short-chain dehydrogenase | no | no | 0.642 | 0.863 | 0.311 | 5e-39 | |
| P53199 | 349 | Sterol-4-alpha-carboxylat | yes | no | 0.621 | 0.925 | 0.323 | 5e-37 | |
| O43050 | 340 | Sterol-4-alpha-carboxylat | yes | no | 0.621 | 0.95 | 0.322 | 5e-36 |
| >sp|A9X4U2|HSDD3_ARATH 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3 OS=Arabidopsis thaliana GN=3BETAHSD/D3 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 583 bits (1504), Expect = e-166, Method: Compositional matrix adjust.
Identities = 292/493 (59%), Positives = 367/493 (74%), Gaps = 9/493 (1%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+TCVVL GRGF+GRSLV RLL LG VRV DS +L LD ES+SLL D+LSSGRA YH
Sbjct: 13 KTCVVLGGRGFIGRSLVSRLLRLGNWTVRVADSGHTLHLD--ESDSLLEDALSSGRASYH 70
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
VDVRD QI KV EG+ VFY+ ATDL + D+++CY +IVQG +NV++ACRE VR+L+
Sbjct: 71 CVDVRDKPQIVKVTEGSYVVFYMGATDLRSHDYFDCYKVIVQGTRNVISACRESGVRKLI 130
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
YNSTADVVFDGS I +GDE+L KFQ ++ D KAQAEAL+ ANN DGLLTCALR S
Sbjct: 131 YNSTADVVFDGSQPIRDGDESLRRPLKFQSMLTDFKAQAEALIKLANNRDGLLTCALRSS 190
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSV 248
VFGPGDT+ VP LVNLAK G+ KFI+GSGEN+SDFTY ENV+HAH+CA +ALDS+M V
Sbjct: 191 IVFGPGDTEFVPFLVNLAKSGYAKFILGSGENISDFTYSENVSHAHICAVKALDSQMEFV 250
Query: 249 AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYN 308
AG FFITNL+P++FWDF+S I+EGLGY RP IKLP +V Y+ L+KW HEK GL + N
Sbjct: 251 AGKEFFITNLKPVRFWDFVSHIVEGLGYPRPSIKLPVRLVLYVFSLLKWTHEKEGLGS-N 309
Query: 309 HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSSLAYSRD 368
+ + Y + LAS TRTF+C AA+KH+GY+PVV+LE+G++ST+Q FS RD L S D
Sbjct: 310 YDTAHQYAL-LASSTRTFNCNAAKKHLGYTPVVTLEDGIASTLQWFS---RD--LEKSDD 363
Query: 369 FNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAAKFLLLL 428
QS ++LLG GKVADILLW++EKKTF FLVL L +YWFF G+T TSSAA+ L +
Sbjct: 364 TIIQSTADQLLGCGKVADILLWRNEKKTFVSFLVLNLFYYWFFFSGNTFTSSAAQLLFIF 423
Query: 429 SAVLFGYGILPSNIFGFNVKRISPSCFELSETVIKDSIARIAFLWNMGFRNIRLLAKGDD 488
+ L+G +PS IFGF V +I P FE+SE+ ++D + I +WN G R+ + L+ G D
Sbjct: 424 AVALYGVSFVPSKIFGFQVNKIPPWRFEISESAVRDLSSDIVVVWNQGVRSFKSLSSGGD 483
Query: 489 WNTFFKVCSAYYI 501
W FFK+ + Y+
Sbjct: 484 WIKFFKIAGSLYL 496
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Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 7EC: 0 |
| >sp|Q67ZE1|HSDD2_ARATH 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 OS=Arabidopsis thaliana GN=3BETAHSD/D2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 420 bits (1079), Expect = e-116, Method: Compositional matrix adjust.
Identities = 223/497 (44%), Positives = 300/497 (60%), Gaps = 7/497 (1%)
Query: 2 PFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS 61
P R CVV GRGF R LV L+ VR+ D ++ LDP E N +L + L
Sbjct: 3 PAATETERWCVVTGGRGFAARHLVEMLVRYEMFCVRIADLAPAIMLDPQEGNGVLDEGLR 62
Query: 62 SGRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRE 121
SGR +Y D+RD SQ+ K +GA VF++ A D + ++ Y + VQG +NV+ AC +
Sbjct: 63 SGRVQYISADLRDKSQVVKAFQGAEVVFHMAAPDSSINNHQLQYSVNVQGTQNVIDACVD 122
Query: 122 CKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLL 181
V+RL+Y S+ VVFDG H I NG E++ K D KA+ E L++ AN +GLL
Sbjct: 123 VGVKRLIYTSSPSVVFDGVHGILNGTESMAYPIKHNDSYSATKAEGEELIMKANGRNGLL 182
Query: 182 TCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEAL 241
TC +RPS++FGPGD LVP LV A+ G +KFIIG G N+ DFTYVENVAHAHVCA AL
Sbjct: 183 TCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNLYDFTYVENVAHAHVCAERAL 242
Query: 242 DSR---MVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWI 298
S AG A+FITN+EPIKFW+F+S +L+GLGY+RP IK+P ++ I LV+
Sbjct: 243 ASGGDVSTKAAGQAYFITNMEPIKFWEFMSQLLDGLGYERPSIKIPAFIMMPIAHLVELT 302
Query: 299 HEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358
++ LG V+L S +RTFD A+ +GY+PVV L+EG+ TI SFSHL
Sbjct: 303 YKVLGPYGMTVPQLTPSRVRLLSCSRTFDSTKAKDRLGYAPVVPLQEGIRRTIDSFSHLT 362
Query: 359 RDSSLAYSRDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLT 418
S SK ++LGGGKVAD LLWKD K+T +L+ ++Y F GST+
Sbjct: 363 AGS----QSKREGPSKASRILGGGKVADTLLWKDLKQTLIAIFILISIYYNFVATGSTVV 418
Query: 419 SSAAKFLLLLSAVLFGYGILPSNIFGFNVKRISPSCFELSETVIKDSIARIAFLWNMGFR 478
++ +K LL+ S LF +GILP IFG+ V++I S F LS+ D + WN +
Sbjct: 419 TALSKALLVASVFLFLHGILPEKIFGYTVEKIPASQFHLSKDSSHDLSLSVISSWNTTVK 478
Query: 479 NIRLLAKGDDWNTFFKV 495
+R L +G+DW+ FFKV
Sbjct: 479 ALRSLCQGNDWSFFFKV 495
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Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|Q9FX01|HSDD1_ARATH 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 OS=Arabidopsis thaliana GN=3BETAHSD/D1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 336 bits (862), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 189/448 (42%), Positives = 258/448 (57%), Gaps = 25/448 (5%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
R CVV GRGF R LV L+ VR+ D ++ L+P E +L +++ SGR +Y
Sbjct: 10 RWCVVTGGRGFAARHLVEMLVRYQMFHVRIADLAPAIVLNPHEETGILGEAIRSGRVQYV 69
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
D+R+ +Q+ K +GA VF++ A D + ++ Y + VQG NV+ AC E V+RL+
Sbjct: 70 SADLRNKTQVVKGFQGAEVVFHMAAPDSSINNHQLQYSVNVQGTTNVIDACIEVGVKRLI 129
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
Y S+ VVFDG H N DE+L K D KA+ EAL+L AN GLLTC +RPS
Sbjct: 130 YTSSPSVVFDGVHGTLNADESLPYPPKHNDSYSATKAEGEALILKANGRSGLLTCCIRPS 189
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSR---M 245
++FGPGD +VP LV A+ G +KFIIG G N DFTYVENV HAHVCA AL S
Sbjct: 190 SIFGPGDKLMVPSLVTAARAGKSKFIIGDGSNFYDFTYVENVVHAHVCAERALASGGEVC 249
Query: 246 VSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLR 305
AG A+FITN+EPIKFW+F+S +LEGLGY+RP IK+P ++ I LV+ ++ LG
Sbjct: 250 AKAAGQAYFITNMEPIKFWEFMSQLLEGLGYERPSIKIPASLMMPIAYLVELAYKLLGPY 309
Query: 306 TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSSLAY 365
+ V+L S RTFD A+ +GYSPVV L+EG+ TI SFSHL +
Sbjct: 310 GMKVPVLTPSRVRLLSCNRTFDSSKAKDRLGYSPVVPLQEGIKRTIDSFSHLKAQN---- 365
Query: 366 SRDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFL---GGSTLTSSAA 422
Q K E V + + WK K+T ++L+ L++ F S + ++ +
Sbjct: 366 ------QPKTE-------VTETIQWK--KQTLIAIVILITLYHNFVATTGSSSVIITAVS 410
Query: 423 KFLLLLSAVLFGYGILPSNIFGFNVKRI 450
K LL+ S +F GILP + F K+I
Sbjct: 411 KVLLVSSIFMFINGILPEKMKVFGSKKI 438
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Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|Q5PPL3|NSDHL_RAT Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Rattus norvegicus GN=Nsdhl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (552), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 132/354 (37%), Positives = 190/354 (53%), Gaps = 19/354 (5%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+ C V+ G GF+G+ +V +LL G V V D Q + R ++
Sbjct: 27 KKCTVIGGSGFLGQHMVEQLLSRGYA-VNVFDVRQGF---------------DNPRVQFF 70
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
D+ + + L+G STVF+ + N+++ Y + G K V+ C+E V++L+
Sbjct: 71 IGDLCNQQDLYPALKGVSTVFHCASPPSNSNNKELFYRVNSTGTKTVIETCKEAGVQKLI 130
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-GLLTCALRP 187
S+A VVF+G DI NG E L K D + K E VL AN+ LT A+RP
Sbjct: 131 LTSSASVVFEGV-DIKNGTEDLPYAMKPIDYYTETKILQERAVLDANDPKKNFLTAAIRP 189
Query: 188 SNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247
+FGP D QLVP+L++ A+ G KF+IG+G+N+ DFT+VENV H H+ AAE L SR
Sbjct: 190 HGIFGPRDPQLVPVLIDAARKGKMKFMIGNGKNLVDFTFVENVVHGHILAAEHL-SRDAG 248
Query: 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTY 307
+ G AF ITN EPI FW FLS IL GL Y+ P +P V +Y+ L+ + L
Sbjct: 249 LGGKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIPYRVAYYLAFLLSLLVMVLSPLIQ 308
Query: 308 NHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDS 361
+ + V LA + C A+K IGY P+V++++ V T+QSF HL +D
Sbjct: 309 IQTTFTPFRVALAGTFHYYSCEKAKKLIGYRPLVTMDDAVERTVQSFHHLRKDK 362
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Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|Q9R1J0|NSDHL_MOUSE Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Mus musculus GN=Nsdhl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 215 bits (548), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 131/354 (37%), Positives = 188/354 (53%), Gaps = 19/354 (5%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+ C V+ G GF+G+ +V +LLE G V V D Q + R ++
Sbjct: 27 KKCTVIGGSGFLGQHMVEQLLERGYT-VNVFDIHQGF---------------DNPRVQFF 70
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
D+ + + L+G STVF+ + +++ Y + G K V+ CRE V++L+
Sbjct: 71 IGDLCNQQDLYPALKGVSTVFHCASPPPYSNNKELFYRVNFIGTKTVIETCREAGVQKLI 130
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-GLLTCALRP 187
S+A VVF+G DI NG E L K D + K E VL AN+ LT A+RP
Sbjct: 131 LTSSASVVFEGV-DIKNGTEDLPYAMKPIDYYTETKILQERAVLDANDPKKNFLTAAIRP 189
Query: 188 SNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247
+FGP D QLVP+L++ A+ G KF+IG+GEN+ DFT+VENV H H+ AAE L S+ +
Sbjct: 190 HGIFGPRDPQLVPILIDAARKGKMKFMIGNGENLVDFTFVENVVHGHILAAEHL-SQDAA 248
Query: 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTY 307
+ G AF ITN EPI FW FLS IL GL Y+ P +P + +Y+ L+ + +
Sbjct: 249 LGGKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIPYWMAYYLAFLLSLLVMVVSPLIQ 308
Query: 308 NHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDS 361
V LA + C A+K GY P+V+++E V T+QSF HL +D
Sbjct: 309 IQPTFTPIRVALAGTFHYYSCEKAKKLFGYRPLVTMDEAVERTVQSFHHLRKDK 362
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Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|Q3ZBE9|NSDHL_BOVIN Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Bos taurus GN=NSDHL PE=2 SV=1 | Back alignment and function description |
|---|
Score = 207 bits (527), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 133/361 (36%), Positives = 192/361 (53%), Gaps = 27/361 (7%)
Query: 5 EAIPRT--CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSS 62
E IP+ C V+ G GF+G+ +V +LL G V V D Q +
Sbjct: 15 EDIPKAKRCTVIGGCGFLGQHMVEQLLARGYA-VNVFDIRQGF---------------DN 58
Query: 63 GRAEYHQVDVRDISQIKKVLEGASTVFYVDAT---DLNTDDFYNCYMIIVQGAKNVVTAC 119
R ++ D+ + L+G STVF+ + + N + FY I G KNV+ C
Sbjct: 59 PRVQFFLGDLCSQQDLYPALKGVSTVFHCASPPPFNNNKELFYRVNYI---GTKNVIETC 115
Query: 120 RECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID- 178
+E V++L+ S+A V+F+G DI NG E L K D + K E VL A++ +
Sbjct: 116 KEAGVQKLILTSSASVIFEGV-DIKNGTEDLPYATKPIDYYTETKILQERAVLGAHDPEK 174
Query: 179 GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238
LT A+RP +FGP D QLVP+L+ AK G KF+IG+G+N+ DFT+VENV H H+ AA
Sbjct: 175 NFLTTAIRPHGIFGPRDPQLVPILIEAAKKGKMKFMIGNGKNLVDFTFVENVVHGHILAA 234
Query: 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWI 298
E L S+ ++ G AF ITN EPI FW FLS IL GL Y+ P +P + +Y+ LLV +
Sbjct: 235 EHL-SQDTALGGKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIPYWLAYYLALLVSLL 293
Query: 299 HEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358
+ V LA + C A+K +GY P+V++++ V T++SF HL
Sbjct: 294 VMVISPVIQLQPTFTPMRVALAGTFHYYSCEKAKKLMGYRPLVTMDDAVDKTVRSFHHLR 353
Query: 359 R 359
+
Sbjct: 354 K 354
|
Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|Q15738|NSDHL_HUMAN Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Homo sapiens GN=NSDHL PE=1 SV=2 | Back alignment and function description |
|---|
Score = 200 bits (509), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 129/355 (36%), Positives = 187/355 (52%), Gaps = 25/355 (7%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+ C V+ G GF+G+ +V +LL G V V D Q D + L D S
Sbjct: 38 KRCTVIGGSGFLGQHMVEQLLARGYA-VNVFDIQQGF--DNPQVRFFLGDLCSR------ 88
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
+ L+G +TVF+ + ++++ Y + G KNV+ C+E V++L+
Sbjct: 89 -------QDLYPALKGVNTVFHCASPPPSSNNKELFYRVNYIGTKNVIETCKEAGVQKLI 141
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-GLLTCALRP 187
S+A V+F+G DI NG E L K D + K E VL AN+ + LT A+RP
Sbjct: 142 LTSSASVIFEGV-DIKNGTEDLPYAMKPIDYYTETKILQERAVLGANDPEKNFLTTAIRP 200
Query: 188 SNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247
+FGP D QLVP+L+ A+ G KF+IG+G+N+ DFT+VENV H H+ AAE L SR +
Sbjct: 201 HGIFGPRDPQLVPILIEAARNGKMKFVIGNGKNLVDFTFVENVVHGHILAAEQL-SRDST 259
Query: 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTY 307
+ G AF ITN EPI FW FLS IL GL Y+ P +P W L + + + +
Sbjct: 260 LGGKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIP---YWVAYYLALLLSLLVMVISP 316
Query: 308 NHSLSACYI---VQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359
L + V LA + C A+K +GY P+V++++ + T+QSF HL R
Sbjct: 317 VIQLQPTFTPMRVALAGTFHYYSCERAKKAMGYQPLVTMDDAMERTVQSFRHLRR 371
|
Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|A8DZE7|D42E1_DANRE Short-chain dehydrogenase/reductase family 42E member 1 OS=Danio rerio GN=sdr42e1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (411), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 113/363 (31%), Positives = 190/363 (52%), Gaps = 29/363 (7%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
++ G G+ G L LL+ S++ + D S LP+ L RA D
Sbjct: 11 LITGGGGYFGFRLACALLK---------TSSKVVLFDVSPPIQDLPEGLIFMRA-----D 56
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMII---VQGAKNVVTACRECKVRRLV 128
+RD +Q++K + G+ VF++ + ++ + N +I V+G +N++ AC V RL+
Sbjct: 57 IRDYAQVEKAVRGSHCVFHIASYGMSGREQLNRKLIEEVNVKGTENILRACVAHSVPRLI 116
Query: 129 YNSTADVVFDGSHDIHNGDETLT--CCWKFQDLMCDLKAQAEALVLFANNI-----DGLL 181
Y ST +VVF G +I NGDE+L D K+ AE VL ANN+ G+L
Sbjct: 117 YTSTFNVVF-GGQEIKNGDESLPYLPLHLHPDHYSRTKSIAEMQVLKANNLALSNSTGVL 175
Query: 182 -TCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEA 240
TCALRP+ ++GPG+ + +P +V+ + G +F+ G +++ +F +V+N+ AH+ AA+A
Sbjct: 176 RTCALRPAGIYGPGEQRHLPRIVSYIENGIFRFVYGDPDSLVEFVHVDNLVSAHLLAADA 235
Query: 241 L-DSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIH 299
L + + AG A+FI++ P+ ++F ++EGLGY P ++LP ++++ L + +H
Sbjct: 236 LTEKQQCRAAGQAYFISDGRPVNNFEFFRPLVEGLGYSFPTLRLPISMIYFFAFLTEMVH 295
Query: 300 EKLGLRTYN-HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358
+G R YN L V T F A++ +GY P + E V Q+ H
Sbjct: 296 FVVG-RIYNFQPLLTRTEVYKTGVTHYFSMRKAREELGYEPKLYDLEDVVQWFQARGHGK 354
Query: 359 RDS 361
+ S
Sbjct: 355 KRS 357
|
Danio rerio (taxid: 7955) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P53199|ERG26_YEAST Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERG26 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 155 bits (393), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 115/356 (32%), Positives = 182/356 (51%), Gaps = 33/356 (9%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELG-KCIVRVTDSTQSLQLDPSESNSLLPDSLSS------ 62
+ +++ G GF+G L+ + ++ K + + D LP+ LS
Sbjct: 6 SVLIIGGSGFLGLHLIQQFFDINPKPDIHIFDVRD------------LPEKLSKQFTFNV 53
Query: 63 GRAEYHQVDVRDISQIKKVL-EGASTVFYVDATDLN--TDDFYNCYMIIVQGAKNVVTAC 119
++H+ D+ ++ + E + V A+ ++ D Y+ ++ V+G +NV+ C
Sbjct: 54 DDIKFHKGDLTSPDDMENAINESKANVVVHCASPMHGQNPDIYD--IVNVKGTRNVIDMC 111
Query: 120 RECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDG 179
++C V LVY S+A V+F+G D+HN DET D + KA AE +VL AN+
Sbjct: 112 KKCGVNILVYTSSAGVIFNG-QDVHNADETWPIPEVPMDAYNETKAIAEDMVLKANDPSS 170
Query: 180 -LLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238
T ALRP+ +FGPGD QLVP L +AK G +KF IG N+ D+TY NVA AHV AA
Sbjct: 171 DFYTVALRPAGIFGPGDRQLVPGLRQVAKLGQSKFQIGDNNNLFDWTYAGNVADAHVLAA 230
Query: 239 EA-LDSRM-VSVAGMAFFITNLEPIKFWDFLSIILEGLGY-QRPFIKLPTGVVWYIILLV 295
+ LD + +V+G FFITN P FW + + G+ + I L V L
Sbjct: 231 QKLLDPKTRTAVSGETFFITNDTPTYFWALARTVWKADGHIDKHVIVLKRPVAICAGYLS 290
Query: 296 KWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTI 351
+W+ + LG L+ + V++ R + A+K +GY+P V +EEG++ T+
Sbjct: 291 EWVSKMLGKEP---GLTP-FRVKIVCAYRYHNIAKAKKLLGYTPRVGIEEGINKTL 342
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|O43050|ERG26_SCHPO Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg26 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 152 bits (385), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 114/353 (32%), Positives = 177/353 (50%), Gaps = 30/353 (8%)
Query: 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAE 66
+P V++ G GF+G ++ +L E ++ + D E+ LL + G+
Sbjct: 1 MPMNSVLVIGSGFLGGHIIRQLCE--------RENLRIAAFDLFENEKLLHEL--HGQFT 50
Query: 67 YHQVDVRDISQIKKVLE--GASTVFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECK 123
+ D+ I++V E V + + N D Y + + V G N++ AC++
Sbjct: 51 MYTGDLTKQGDIERVFEEFHPRVVIHTASPVHNLARDIY--FEVNVDGTANIIKACQKFN 108
Query: 124 VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTC 183
V LVY S+A VVF+G+ D+ N DE+ D + KA AE VL A++ + L T
Sbjct: 109 VDALVYTSSAGVVFNGA-DLINVDESQPIPEVHMDAYNESKALAEKQVLEASS-ESLKTA 166
Query: 184 ALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243
ALR + +FGPGD QLVP ++++ K G TKF +G N+ DFTY+EN A+AH+ A + L S
Sbjct: 167 ALRVAGLFGPGDRQLVPGMLSVLKNGQTKFQLGDNLNLFDFTYIENAAYAHLLAMDNLLS 226
Query: 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPF-IKLPTGVVWYIILLVKWI---- 298
+ G FFITN + I FWDF I G+ P+ IK P V + +W+
Sbjct: 227 SNPTANGQVFFITNGQVIYFWDFARAIWAHAGHVPPYIIKFPRPVGMLLATAAEWVCYFL 286
Query: 299 HEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTI 351
++ G + VQ + R F+ A+ + Y P+V LEEG+ T+
Sbjct: 287 KKEPGFTRFR--------VQFSCANRYFNIQKAEDVLKYHPIVDLEEGIRRTL 331
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 520 | ||||||
| 359478143 | 581 | PREDICTED: 3beta-hydroxysteroid-dehydrog | 0.957 | 0.857 | 0.698 | 0.0 | |
| 255577185 | 579 | hydroxysteroid dehydrogenase, putative [ | 0.959 | 0.861 | 0.678 | 0.0 | |
| 449459852 | 582 | PREDICTED: 3beta-hydroxysteroid-dehydrog | 0.95 | 0.848 | 0.634 | 0.0 | |
| 449498843 | 582 | PREDICTED: LOW QUALITY PROTEIN: 3beta-hy | 0.95 | 0.848 | 0.632 | 0.0 | |
| 147801865 | 1976 | hypothetical protein VITISV_007871 [Viti | 0.890 | 0.234 | 0.636 | 0.0 | |
| 356541140 | 575 | PREDICTED: 3beta-hydroxysteroid-dehydrog | 0.953 | 0.862 | 0.623 | 0.0 | |
| 356544508 | 586 | PREDICTED: 3beta-hydroxysteroid-dehydrog | 0.944 | 0.837 | 0.632 | 1e-180 | |
| 18406234 | 561 | 3beta-hydroxysteroid-dehydrogenase/decar | 0.930 | 0.862 | 0.592 | 1e-164 | |
| 89521300 | 561 | 4-alphacarboxysterol-dehydrogenase/C4-de | 0.930 | 0.862 | 0.592 | 1e-164 | |
| 357473073 | 589 | 3beta-hydroxysteroid-dehydrogenase/decar | 0.925 | 0.816 | 0.575 | 1e-158 |
| >gi|359478143|ref|XP_002269633.2| PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3-like [Vitis vinifera] gi|297743842|emb|CBI36725.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/500 (69%), Positives = 412/500 (82%), Gaps = 2/500 (0%)
Query: 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL 60
M DE + +TCVV GRGF+GR LVLRLL+LGK IVRV DS QSLQLDPSE S+L +++
Sbjct: 1 MAIDENL-KTCVVFGGRGFIGRFLVLRLLKLGKWIVRVADSAQSLQLDPSEDRSVLSEAI 59
Query: 61 SSGRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACR 120
SSGRA VDVRD +Q++K +EGAS VFY+D T T+DFY CYMIIVQG +NV+ AC+
Sbjct: 60 SSGRASCCAVDVRDKAQVRKAIEGASVVFYMDPTITYTNDFYLCYMIIVQGVRNVINACQ 119
Query: 121 ECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGL 180
ECKV+RL+YNS+ADVVFDGSHDI+NGDE+L C WKF+D++ D+KAQAE LVL ANNIDGL
Sbjct: 120 ECKVKRLIYNSSADVVFDGSHDIYNGDESLPCPWKFEDMLTDIKAQAEGLVLIANNIDGL 179
Query: 181 LTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEA 240
+TCALRP NVFGPGD QLVP LVN AK G KF+IGSGENMSDFTYVENVAHAHVCA EA
Sbjct: 180 VTCALRPCNVFGPGDKQLVPFLVNKAKSGHAKFVIGSGENMSDFTYVENVAHAHVCAEEA 239
Query: 241 LDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHE 300
L SRMVSVAG FFITNLEP+KFW+F+S+ILEGLGYQRP KLP G+V Y++ LV+W+ +
Sbjct: 240 LVSRMVSVAGKVFFITNLEPVKFWEFVSLILEGLGYQRPLFKLPAGMVLYVLSLVEWMRD 299
Query: 301 KLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360
KL R+ NH +SA Y+VQ+ASRTRTF+C AAQKHIGYSPVVSLEEGV+ T +SFS L++D
Sbjct: 300 KLDFRS-NHPVSAQYVVQIASRTRTFNCSAAQKHIGYSPVVSLEEGVTLTTESFSQLSQD 358
Query: 361 SSLAYSRDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSS 420
SS+ RDF+EQSKV+KLLGGGKVADILLW+DEKKTFT FL L L+FYWFFL G T SS
Sbjct: 359 SSVMALRDFDEQSKVDKLLGGGKVADILLWRDEKKTFTCFLALFLMFYWFFLCGRTFISS 418
Query: 421 AAKFLLLLSAVLFGYGILPSNIFGFNVKRISPSCFELSETVIKDSIARIAFLWNMGFRNI 480
AAK LLL++A+L G GILP+NIFGF+++RIS SCFE+S+TV+ D I +A LWN I
Sbjct: 419 AAKLLLLVTAILSGQGILPTNIFGFSIQRISLSCFEISDTVVNDLITNMANLWNNWIHMI 478
Query: 481 RLLAKGDDWNTFFKVCSAYY 500
RLLA G DWNTFFKV Y
Sbjct: 479 RLLAGGGDWNTFFKVAIPLY 498
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255577185|ref|XP_002529475.1| hydroxysteroid dehydrogenase, putative [Ricinus communis] gi|223531033|gb|EEF32885.1| hydroxysteroid dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/501 (67%), Positives = 407/501 (81%), Gaps = 2/501 (0%)
Query: 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDS 59
+PF E PRTC V+ GRGF+GRSLV LL+LG IVRV DS QSLQLD ++S +S L D+
Sbjct: 5 VPFGELNPRTCTVVGGRGFIGRSLVFNLLKLGNWIVRVVDSAQSLQLDLTDSLDSSLNDA 64
Query: 60 LSSGRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTAC 119
+SSGRA YH +DV DIS I K +EG+S VFY++ATDL T DFY CY +VQGAKNV+ AC
Sbjct: 65 ISSGRASYHYIDVIDISVIAKAIEGSSVVFYMEATDLWTHDFYYCYRNVVQGAKNVIDAC 124
Query: 120 RECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDG 179
R+CKVR+L+YNS+ADV+FDGSHDI NGDE+L C W+F+D++ DLKA AEALVLFANNIDG
Sbjct: 125 RQCKVRKLIYNSSADVIFDGSHDICNGDESLPCHWRFEDMLNDLKAHAEALVLFANNIDG 184
Query: 180 LLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239
LLTCALRPSNVFGPGDTQL+P L++LAK G KFIIGSGENMSDFTYVENVAHAH+CAAE
Sbjct: 185 LLTCALRPSNVFGPGDTQLLPFLISLAKSGCAKFIIGSGENMSDFTYVENVAHAHICAAE 244
Query: 240 ALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIH 299
ALDSRMV VAG AFFITNLEP+KFW+F S+ILE L YQRP IKLP +VWY++L +KW+H
Sbjct: 245 ALDSRMVCVAGKAFFITNLEPMKFWEFASLILEALSYQRPLIKLPAQMVWYVLLFIKWMH 304
Query: 300 EKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359
EKLG YNHS+SA Y +LAS TRTF+CIAAQK+IGYSPVVSL++G++ TI+++S+L +
Sbjct: 305 EKLGFSKYNHSMSA-YFFRLASHTRTFNCIAAQKYIGYSPVVSLDDGIALTIEAYSNLVK 363
Query: 360 DSSLAYSRDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTS 419
D S +F E+SKV+KLLGGGKVADILLW+DEKKTFTYFL+ +LFYWF L G T TS
Sbjct: 364 DPSFMRCPNFEEESKVDKLLGGGKVADILLWRDEKKTFTYFLIFAVLFYWFLLSGRTFTS 423
Query: 420 SAAKFLLLLSAVLFGYGILPSNIFGFNVKRISPSCFELSETVIKDSIARIAFLWNMGFRN 479
SAA+ LLL +L+GYG LP I GF ++RIS S FE+SET++KDS+ IA LWN G N
Sbjct: 424 SAARLLLLSVTILYGYGFLPLKISGFTIQRISLSWFEISETMVKDSVTSIASLWNRGVHN 483
Query: 480 IRLLAKGDDWNTFFKVCSAYY 500
IRLL +G D N F KV Y
Sbjct: 484 IRLLVQGKDSNRFLKVLFVLY 504
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459852|ref|XP_004147660.1| PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/495 (63%), Positives = 391/495 (78%), Gaps = 1/495 (0%)
Query: 3 FDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSS 62
F E +TCVVL GRGF+GRSLVLRLL+L K VR+ DS SL+LDPSE +SLL D+L +
Sbjct: 7 FLELNTKTCVVLGGRGFLGRSLVLRLLKLAKWNVRIADSANSLELDPSEHDSLLSDALIA 66
Query: 63 GRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC 122
GRA Y VDVR+ QI L G+S VFY+D D +++D Y YM IVQGAKNV++ACR+C
Sbjct: 67 GRASYFHVDVRNKDQIVAALSGSSVVFYMDYEDSHSNDIYLSYMFIVQGAKNVISACRDC 126
Query: 123 KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLT 182
KVRRL++NS+ADV+FDGS DI NG+E+LT WKF+D++ DLKAQAEAL+LFAN+IDGLLT
Sbjct: 127 KVRRLIFNSSADVIFDGSRDILNGEESLTYPWKFEDMLSDLKAQAEALILFANDIDGLLT 186
Query: 183 CALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242
CALRPSNVFGP DT+LVP +V+ AK G+ KFIIG+GENMSDFT+VENV HAH+CA EALD
Sbjct: 187 CALRPSNVFGPEDTRLVPFIVHQAKSGFAKFIIGNGENMSDFTFVENVTHAHICAEEALD 246
Query: 243 SRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKL 302
RMVSVAG AFFITN +P+KFW+F+S+IL GLGY+RP +KLP+ VVW ++L +KWI EK
Sbjct: 247 FRMVSVAGKAFFITNFKPMKFWEFISLILRGLGYRRPSVKLPSKVVWNVLLFMKWIDEKF 306
Query: 303 GLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSS 362
G YNHS A YI QLAS TRTF C AA K +GYSPVVSLEEG++ TI+SFSHL ++ S
Sbjct: 307 GFNKYNHSTWAHYI-QLASCTRTFSCAAAHKQLGYSPVVSLEEGITLTIKSFSHLRKELS 365
Query: 363 LAYSRDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAA 422
LA +F E+SK +KLLGGG+VAD+LLW+DEKK+FT FL LLFYWFF+ G T SSAA
Sbjct: 366 LASFTEFTEESKADKLLGGGRVADVLLWRDEKKSFTCFLASSLLFYWFFVRGGTFISSAA 425
Query: 423 KFLLLLSAVLFGYGILPSNIFGFNVKRISPSCFELSETVIKDSIARIAFLWNMGFRNIRL 482
+ LL + VL+GYG +P NI+GF V+++S + F S++V++DSI +A LWN G N R
Sbjct: 426 QLLLSIIIVLYGYGFIPPNIYGFPVQKLSVTAFRQSDSVVRDSIMTLACLWNRGVHNARA 485
Query: 483 LAKGDDWNTFFKVCS 497
LA+G+DWN F K +
Sbjct: 486 LARGEDWNYFLKAVA 500
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449498843|ref|XP_004160650.1| PREDICTED: LOW QUALITY PROTEIN: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/495 (63%), Positives = 389/495 (78%), Gaps = 1/495 (0%)
Query: 3 FDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSS 62
F E +TCVVL GRGF+GRSLVLRLL+L K VR+ DS SL+LDPSE +SLL D+L +
Sbjct: 7 FLELNTKTCVVLGGRGFLGRSLVLRLLKLAKWNVRIADSANSLELDPSEHDSLLSDALIA 66
Query: 63 GRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC 122
GRA Y VDVR+ QI L G+S VFY+D D +++D Y YM IVQGAKNV++ACR+C
Sbjct: 67 GRASYFHVDVRNKDQIVAALSGSSVVFYMDYEDSHSNDIYLSYMFIVQGAKNVISACRDC 126
Query: 123 KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLT 182
KVRRL++NS+ADV+FDGS DI NG+E+LT WKF+D++ DLKAQAEAL+LFAN+IDGLLT
Sbjct: 127 KVRRLIFNSSADVIFDGSRDILNGEESLTYPWKFEDMLSDLKAQAEALILFANDIDGLLT 186
Query: 183 CALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242
CALRPSNVFGP DT+LVP +V+ AK G+ KFIIG+GENMSDFT+VENV HAH+CA EALD
Sbjct: 187 CALRPSNVFGPEDTRLVPFIVHQAKSGFAKFIIGNGENMSDFTFVENVTHAHICAEEALD 246
Query: 243 SRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKL 302
RMVSVAG AFFITN +P+KFW+F+S+IL GLGY+RP +KLP+ VVW ++L +KWI EK
Sbjct: 247 FRMVSVAGKAFFITNFKPMKFWEFISLILRGLGYRRPSVKLPSKVVWNVLLFMKWIDEKF 306
Query: 303 GLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSS 362
G YNHS A YI QLAS TRTF C AA K +GYSPVVSLEEG++ TI+SFSHL ++ S
Sbjct: 307 GFNKYNHSTWAHYI-QLASCTRTFSCAAAHKQLGYSPVVSLEEGITLTIKSFSHLRKELS 365
Query: 363 LAYSRDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAA 422
LA +F E+SK +KLLGGG+VAD+LLW+DEKK+FT FL LLFYWF G T SSAA
Sbjct: 366 LASFTEFTEESKADKLLGGGRVADVLLWRDEKKSFTCFLASSLLFYWFLXRGGTFISSAA 425
Query: 423 KFLLLLSAVLFGYGILPSNIFGFNVKRISPSCFELSETVIKDSIARIAFLWNMGFRNIRL 482
+ LL + VL+GYG +P NI+GF V+++S + F S++V++DSI +A LWN G N R
Sbjct: 426 QLLLSIIIVLYGYGFIPPNIYGFPVQKLSVTAFRQSDSVVRDSIMTLACLWNRGVHNARA 485
Query: 483 LAKGDDWNTFFKVCS 497
LA+G+DWN F K +
Sbjct: 486 LARGEDWNYFLKAVA 500
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147801865|emb|CAN74982.1| hypothetical protein VITISV_007871 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/504 (63%), Positives = 384/504 (76%), Gaps = 41/504 (8%)
Query: 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL 60
M DE + +TCVV GRGF+GR LVLRLL+LGK IVRV DS QSLQLDPSE S+L +++
Sbjct: 1 MAIDENL-KTCVVFGGRGFIGRFLVLRLLKLGKWIVRVADSAQSLQLDPSEDRSVLSEAI 59
Query: 61 SSGRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACR 120
SSGRA VDVRD +Q++K +EGAS VFY+D T T+DFY CYMIIVQG +NV+ AC+
Sbjct: 60 SSGRASCCAVDVRDKAQVRKAIEGASVVFYMDPTITYTNDFYLCYMIIVQGVRNVINACQ 119
Query: 121 ECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGL 180
ECKV+RL+YNS+ADVVFDGSHDI+NGDE+L C WKF+D++ D+KAQAE LVL ANNIDGL
Sbjct: 120 ECKVKRLIYNSSADVVFDGSHDIYNGDESLPCPWKFEDMLTDIKAQAEGLVLIANNIDGL 179
Query: 181 LTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEA 240
+TCALRP NVFGPGD QLVP LVN AK G KF+IGSGENMSDFTYVENVAHAHVCA EA
Sbjct: 180 VTCALRPCNVFGPGDKQLVPFLVNKAKSGHAKFVIGSGENMSDFTYVENVAHAHVCAEEA 239
Query: 241 LDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHE 300
L SRMVSVAG FFITNLEP+KFW+F+S+ILEGLGYQRP KLP G+V Y++ LV+W+ +
Sbjct: 240 LVSRMVSVAGKVFFITNLEPVKFWEFVSLILEGLGYQRPLFKLPAGMVLYVLSLVEWMRD 299
Query: 301 KLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360
KL R+ NH +SA Y+VQ+ASRTRTF+C AAQKHIGYSPVVSLEEGV+ T +SFS L++D
Sbjct: 300 KLDFRS-NHPVSAQYVVQIASRTRTFNCSAAQKHIGYSPVVSLEEGVTLTTESFSQLSQD 358
Query: 361 SSLAYSRDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSS 420
SS+ RDF+EQSKV+KLLGGGK
Sbjct: 359 SSVMALRDFDEQSKVDKLLGGGK------------------------------------- 381
Query: 421 AAKFLLLLSAVLFGYGILPSNIFGFNVKRISPSCFELSETVIKDSIARIAFLWNMGFRNI 480
AK LLL++A+L G GILP+NIFGF+++RIS SCFE+S TV+ D I +A LWN I
Sbjct: 382 -AKLLLLVTAILSGQGILPTNIFGFSIQRISLSCFEISXTVVNDLITNMANLWNNWIHMI 440
Query: 481 RLLAKGDDWNTFFKVC-SAYYIKV 503
RLLA G DWNTFFKV Y++K+
Sbjct: 441 RLLAGGGDWNTFFKVAIPLYFLKL 464
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356541140|ref|XP_003539040.1| PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/499 (62%), Positives = 393/499 (78%), Gaps = 3/499 (0%)
Query: 3 FDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSS 62
F + P+TCVVL GRGF+GRSLVLRLL+LG IVRV DS QSLQL SES LL +LSS
Sbjct: 8 FADLNPKTCVVLGGRGFLGRSLVLRLLKLGNWIVRVADSAQSLQLHHSES--LLEQALSS 65
Query: 63 GRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC 122
RA Y VD+ D I KVLEG+S VFY+D ++ ++FY CY ++VQGAKNV++ACREC
Sbjct: 66 SRASYFHVDLLDKRSIVKVLEGSSVVFYMDVAGVDVNNFYTCYKLMVQGAKNVISACREC 125
Query: 123 KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLT 182
+VRRL+YNS+ADVV G HDI +GDE+L WK + + DLKAQAEAL+L AN+IDGLLT
Sbjct: 126 RVRRLIYNSSADVVVGGLHDIRDGDESLAYPWKTNNTLSDLKAQAEALILSANDIDGLLT 185
Query: 183 CALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242
C+LRPSNVFGPGDT+ VP + LA+ G++KFIIG+G+N+SDFT+ ENV HAH+CA EAL+
Sbjct: 186 CSLRPSNVFGPGDTEFVPYFLKLARYGFSKFIIGTGDNLSDFTFSENVTHAHICAEEALN 245
Query: 243 SRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKL 302
+ VSVAG FFITNLEP+KFW+FLS++LEGL YQRPFIKLP +V YI+ ++KW+HEKL
Sbjct: 246 FQTVSVAGKTFFITNLEPMKFWEFLSLLLEGLEYQRPFIKLPAKLVQYILSVLKWVHEKL 305
Query: 303 GLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSS 362
G R +++ L + QLAS TRTF+C+AAQK IGYSP+VSLEEGV+ TI+SFSHLARDSS
Sbjct: 306 GSRYFSYPL-LVHFFQLASYTRTFNCMAAQKDIGYSPIVSLEEGVTLTIESFSHLARDSS 364
Query: 363 LAYSRDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAA 422
+ EQSK +KLLGGGKVADILLW++EKK+F FLVLVLLFYWFFL G T S+AA
Sbjct: 365 FSRCCSSTEQSKADKLLGGGKVADILLWREEKKSFACFLVLVLLFYWFFLSGRTFISAAA 424
Query: 423 KFLLLLSAVLFGYGILPSNIFGFNVKRISPSCFELSETVIKDSIARIAFLWNMGFRNIRL 482
+ LL + +L+G+G LPS +FGF+++RI + FE+S+T +KDS+ +LWN GF+NI
Sbjct: 425 RLLLFSTLLLYGHGFLPSKLFGFHIQRIPTTYFEISDTAVKDSVTTTVYLWNRGFQNISG 484
Query: 483 LAKGDDWNTFFKVCSAYYI 501
LA+GDDW+ FFK+ Y+
Sbjct: 485 LAQGDDWSAFFKIAVFLYL 503
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544508|ref|XP_003540692.1| PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust.
Identities = 313/495 (63%), Positives = 394/495 (79%), Gaps = 4/495 (0%)
Query: 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSG-RAE 66
P+TCVVL GRGFVGRSLVLRLL+LG IVR+ DS QSLQL SES LL +LSS RA
Sbjct: 12 PKTCVVLGGRGFVGRSLVLRLLKLGNWIVRIADSAQSLQLHHSES--LLQQALSSSSRAS 69
Query: 67 YHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRR 126
Y VD+RD I KVL+G+ VFY+D ++ +DF CY +IVQGAKNV++ CREC+V+R
Sbjct: 70 YFHVDLRDKRSIIKVLQGSFVVFYLDIAGVDGNDFCTCYKLIVQGAKNVISVCRECRVKR 129
Query: 127 LVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALR 186
L+YNS+ADVVFDG HDI +GDE+L WK +++ DLKAQAEAL+L AN+IDGLLTC+LR
Sbjct: 130 LIYNSSADVVFDGLHDIRDGDESLAYPWKTDNMLSDLKAQAEALILSANDIDGLLTCSLR 189
Query: 187 PSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMV 246
PSNVFGPGDT+ VP + LA+ G++KFIIG+G+N+SDFT+ ENV HAH+CA EAL+ +MV
Sbjct: 190 PSNVFGPGDTEFVPYFLKLARYGFSKFIIGTGDNLSDFTFSENVTHAHICAEEALNFQMV 249
Query: 247 SVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRT 306
S AG AFFITNLEP+KFW+FLS++LEGL YQRPFIKLP +V YI+ ++KW+H+KLG R
Sbjct: 250 SAAGKAFFITNLEPMKFWEFLSLLLEGLEYQRPFIKLPAKLVQYILSVLKWVHKKLGPRY 309
Query: 307 YNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSSLAYS 366
+++ L + QLAS TRTF+C+AAQ IGYSP+VSLEEGV+ TI+SFSHL+RDSS
Sbjct: 310 FSYPL-LVHFFQLASYTRTFNCMAAQNDIGYSPIVSLEEGVTLTIESFSHLSRDSSFPRC 368
Query: 367 RDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAAKFLL 426
F EQSK +KLLGGGKVADILLW+DEKK+F YFLVLVLLFYW FL G T SSAA+ LL
Sbjct: 369 CSFTEQSKADKLLGGGKVADILLWRDEKKSFAYFLVLVLLFYWSFLSGRTFISSAARLLL 428
Query: 427 LLSAVLFGYGILPSNIFGFNVKRISPSCFELSETVIKDSIARIAFLWNMGFRNIRLLAKG 486
L + +L+G+G LPS +FGF+++RI S FE+S+T +KDS+ +LWN GF+NIR LA+G
Sbjct: 429 LATLLLYGHGFLPSKLFGFHIQRIPTSYFEISDTAVKDSVTTTVYLWNRGFQNIRGLAQG 488
Query: 487 DDWNTFFKVCSAYYI 501
D+W+ FFK+ Y+
Sbjct: 489 DNWSAFFKIAVFLYL 503
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18406234|ref|NP_565998.1| 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3 [Arabidopsis thaliana] gi|229890389|sp|A9X4U2.2|HSDD3_ARATH RecName: Full=3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3; Short=At3BETAHSD/D3; AltName: Full=4alpha-carboxysterol-C3-dehydrogenase/C4- decarboxylase isoform 1-3; AltName: Full=Reticulon-like protein B20; Short=AtRTNLB20; AltName: Full=Sterol-4-alpha-carboxylate 3-dehydrogenase 3, decarboxylating gi|15027969|gb|AAK76515.1| putative sterol dehydrogenase [Arabidopsis thaliana] gi|20196859|gb|AAB64337.2| putative sterol dehydrogenase [Arabidopsis thaliana] gi|26450922|dbj|BAC42568.1| putative sterol dehydrogenase [Arabidopsis thaliana] gi|330255172|gb|AEC10266.1| 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust.
Identities = 292/493 (59%), Positives = 367/493 (74%), Gaps = 9/493 (1%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+TCVVL GRGF+GRSLV RLL LG VRV DS +L LD ES+SLL D+LSSGRA YH
Sbjct: 13 KTCVVLGGRGFIGRSLVSRLLRLGNWTVRVADSGHTLHLD--ESDSLLEDALSSGRASYH 70
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
VDVRD QI KV EG+ VFY+ ATDL + D+++CY +IVQG +NV++ACRE VR+L+
Sbjct: 71 CVDVRDKPQIVKVTEGSYVVFYMGATDLRSHDYFDCYKVIVQGTRNVISACRESGVRKLI 130
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
YNSTADVVFDGS I +GDE+L KFQ ++ D KAQAEAL+ ANN DGLLTCALR S
Sbjct: 131 YNSTADVVFDGSQPIRDGDESLRRPLKFQSMLTDFKAQAEALIKLANNRDGLLTCALRSS 190
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSV 248
VFGPGDT+ VP LVNLAK G+ KFI+GSGEN+SDFTY ENV+HAH+CA +ALDS+M V
Sbjct: 191 IVFGPGDTEFVPFLVNLAKSGYAKFILGSGENISDFTYSENVSHAHICAVKALDSQMEFV 250
Query: 249 AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYN 308
AG FFITNL+P++FWDF+S I+EGLGY RP IKLP +V Y+ L+KW HEK GL + N
Sbjct: 251 AGKEFFITNLKPVRFWDFVSHIVEGLGYPRPSIKLPVRLVLYVFSLLKWTHEKEGLGS-N 309
Query: 309 HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSSLAYSRD 368
+ + Y + LAS TRTF+C AA+KH+GY+PVV+LE+G++ST+Q FS RD L S D
Sbjct: 310 YDTAHQYAL-LASSTRTFNCNAAKKHLGYTPVVTLEDGIASTLQWFS---RD--LEKSDD 363
Query: 369 FNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAAKFLLLL 428
QS ++LLG GKVADILLW++EKKTF FLVL L +YWFF G+T TSSAA+ L +
Sbjct: 364 TIIQSTADQLLGCGKVADILLWRNEKKTFVSFLVLNLFYYWFFFSGNTFTSSAAQLLFIF 423
Query: 429 SAVLFGYGILPSNIFGFNVKRISPSCFELSETVIKDSIARIAFLWNMGFRNIRLLAKGDD 488
+ L+G +PS IFGF V +I P FE+SE+ ++D + I +WN G R+ + L+ G D
Sbjct: 424 AVALYGVSFVPSKIFGFQVNKIPPWRFEISESAVRDLSSDIVVVWNQGVRSFKSLSSGGD 483
Query: 489 WNTFFKVCSAYYI 501
W FFK+ + Y+
Sbjct: 484 WIKFFKIAGSLYL 496
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|89521300|gb|ABD76542.1| 4-alphacarboxysterol-dehydrogenase/C4-decarboxylase isoform 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust.
Identities = 292/493 (59%), Positives = 367/493 (74%), Gaps = 9/493 (1%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+TCVVL GRGF+GRSLV RLL LG VRV DS +L LD ES+SLL D+LSSGRA YH
Sbjct: 13 KTCVVLGGRGFIGRSLVSRLLRLGNWTVRVADSGHTLHLD--ESDSLLEDALSSGRASYH 70
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
VDVRD QI KV EG+ VFY+ ATDL + D+++CY +IVQG +NV++ACRE VR+L+
Sbjct: 71 CVDVRDKPQIVKVTEGSYVVFYMGATDLRSHDYFDCYKVIVQGTRNVISACRESGVRKLI 130
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
YNSTADVVFDGS I +GDE+L KFQ ++ D KAQAEAL+ ANN DGLLTCALR S
Sbjct: 131 YNSTADVVFDGSQPIRDGDESLRRPLKFQSMLTDFKAQAEALIKLANNRDGLLTCALRSS 190
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSV 248
VFGPGDT+ VP LVNLAK G+ KFI+GSGEN+SDFTY ENV+HAH+CA +ALDS+M V
Sbjct: 191 IVFGPGDTEFVPFLVNLAKSGYAKFILGSGENISDFTYSENVSHAHICAVKALDSQMEFV 250
Query: 249 AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYN 308
AG FFITNL+P++FWDF+S I+EGLGY RP IKLP +V Y+ L+KW HEK GL + N
Sbjct: 251 AGKEFFITNLKPVRFWDFVSHIVEGLGYPRPSIKLPVRLVLYVFSLLKWTHEKEGLGS-N 309
Query: 309 HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSSLAYSRD 368
+ + Y + LAS TRTF+C AA+KH+GY+PVV+LE+G++ST+Q FS RD L S D
Sbjct: 310 YDTAHQYAL-LASSTRTFNCNAAKKHLGYTPVVTLEDGIASTLQWFS---RD--LEKSDD 363
Query: 369 FNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAAKFLLLL 428
QS ++LLG GKVADILLW++EKKTF FLVL L +YWFF G+T TSSAA+ L +
Sbjct: 364 TIIQSTADQLLGCGKVADILLWRNEKKTFVSFLVLNLFYYWFFFSGNTFTSSAAQLLFIF 423
Query: 429 SAVLFGYGILPSNIFGFNVKRISPSCFELSETVIKDSIARIAFLWNMGFRNIRLLAKGDD 488
+ L+G +PS IFGF V +I P FE+SE+ ++D + I +WN G R+ + L+ G D
Sbjct: 424 AVALYGVSFVPSKIFGFQVNKIPPWRFEISESAVRDLSSDIVVVWNQGVRSFKSLSSGGD 483
Query: 489 WNTFFKVCSAYYI 501
W FFK+ + Y+
Sbjct: 484 WIKFFKIAGSLYL 496
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357473073|ref|XP_003606821.1| 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform [Medicago truncatula] gi|355507876|gb|AES89018.1| 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust.
Identities = 292/507 (57%), Positives = 380/507 (74%), Gaps = 26/507 (5%)
Query: 3 FDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSS 62
F ++ P+TCVVL GRGF+G+SLVL+LL+LG IVR+ DST SL L SES LL ++LSS
Sbjct: 8 FQDSNPKTCVVLGGRGFIGKSLVLQLLKLGNWIVRIADSTHSLNLHHSES--LLAEALSS 65
Query: 63 GRAEYHQVDVRDISQIKKVLEGASTVFYVDA-TDLNTDDFYNCYMIIVQGAKNVVTACRE 121
RA Y +D+ D +I KVLEG+S VFY D + N D F + Y +IVQGAKNV+ ACRE
Sbjct: 66 SRASYFHLDLTDKHRIAKVLEGSSVVFYFDVDSSNNGDHFCSLYKLIVQGAKNVIIACRE 125
Query: 122 CKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLL 181
KV+RL+YNS+ADVVFD D+ L WK +++ DLKAQAEAL+L AN+IDG+L
Sbjct: 126 SKVKRLIYNSSADVVFDR-------DKPLAYPWKVDNMLIDLKAQAEALILNANDIDGVL 178
Query: 182 TCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEAL 241
TC+LR SNVFGPGD++LVP + LA+ G+TKFIIG+G+N++DFT+ ENVAHAH+CA EAL
Sbjct: 179 TCSLRSSNVFGPGDSELVPFFLKLARYGFTKFIIGTGDNLTDFTFSENVAHAHICAEEAL 238
Query: 242 DSRMVSVAG------------MAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVW 289
+ + VSVAG AFFITNLEP+KFW FLS++LEGLGY+RPFIKLP +V
Sbjct: 239 NFQTVSVAGKVYTLNSNKVVLTAFFITNLEPMKFWKFLSLLLEGLGYRRPFIKLPANLVQ 298
Query: 290 YIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSS 349
Y++ ++KW++EK G +N+ L + +QLA TRTF+C AAQK+I Y+P+VSLEEGV+
Sbjct: 299 YVLSVLKWLYEKSGPGYFNYPL-LVHFIQLALHTRTFNCSAAQKYIAYAPIVSLEEGVTL 357
Query: 350 TIQSFSHLARDSSLAYSRDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYW 409
TI+SFSHLA+DSS + D +SK +KLLG GKVADILLW++EK +FT FL LV LFYW
Sbjct: 358 TIESFSHLAKDSSFSRCCD---RSKADKLLGSGKVADILLWRNEKASFTCFLGLVFLFYW 414
Query: 410 FFLGGSTLTSSAAKFLLLLSAVLFGYGILPSNIFGFNVKRISPSCFELSETVIKDSIARI 469
FFL GST SSAA+ LL + +L G+G LPS +FGF+++R+ S F++S+T +KDS+
Sbjct: 415 FFLSGSTFISSAARLLLFATLLLCGHGFLPSKLFGFSIQRVPGSNFKISDTAVKDSVTIT 474
Query: 470 AFLWNMGFRNIRLLAKGDDWNTFFKVC 496
LWN GF+NI+ LA+GDDW+ FFKV
Sbjct: 475 LHLWNKGFQNIKGLAQGDDWSIFFKVA 501
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A9X4U2 | HSDD3_ARATH | 1, ., 1, ., 1, ., 1, 7, 0 | 0.5922 | 0.9307 | 0.8627 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 1.1.1.170 | 0.946 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 520 | |||
| cd09813 | 335 | cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD | 1e-131 | |
| pfam01073 | 280 | pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr | 1e-80 | |
| cd05241 | 331 | cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d | 8e-70 | |
| cd09812 | 339 | cd09812, 3b-HSD_like_1_SDR_e, 3beta-hydroxysteroid | 1e-47 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 3e-33 | |
| cd09811 | 354 | cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD | 4e-33 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 1e-26 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 1e-19 | |
| cd05256 | 304 | cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e | 3e-17 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 6e-15 | |
| cd08958 | 293 | cd08958, FR_SDR_e, flavonoid reductase (FR), exten | 8e-15 | |
| pfam02453 | 164 | pfam02453, Reticulon, Reticulon | 9e-15 | |
| cd05264 | 300 | cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase | 1e-12 | |
| TIGR03466 | 328 | TIGR03466, HpnA, hopanoid-associated sugar epimera | 1e-10 | |
| cd05257 | 316 | cd05257, Arna_like_SDR_e, Arna decarboxylase_like, | 2e-10 | |
| cd05240 | 306 | cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase | 5e-10 | |
| cd05229 | 302 | cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | 4e-09 | |
| cd05271 | 273 | cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ub | 8e-09 | |
| PLN02214 | 342 | PLN02214, PLN02214, cinnamoyl-CoA reductase | 1e-08 | |
| pfam13460 | 182 | pfam13460, NAD_binding_10, NADH(P)-binding | 1e-08 | |
| cd05246 | 315 | cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra | 3e-08 | |
| cd05226 | 176 | cd05226, SDR_e_a, Extended (e) and atypical (a) SD | 3e-08 | |
| cd05232 | 303 | cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, | 5e-08 | |
| cd05251 | 242 | cd05251, NmrA_like_SDR_a, NmrA (a transcriptional | 7e-08 | |
| cd05193 | 295 | cd05193, AR_like_SDR_e, aldehyde reductase, flavon | 8e-08 | |
| cd05245 | 293 | cd05245, SDR_a2, atypical (a) SDRs, subgroup 2 | 2e-07 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 3e-07 | |
| cd05227 | 301 | cd05227, AR_SDR_e, aldehyde reductase, extended (e | 5e-07 | |
| cd05273 | 328 | cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP- | 9e-06 | |
| PLN00198 | 338 | PLN00198, PLN00198, anthocyanidin reductase; Provi | 7e-05 | |
| cd05234 | 305 | cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, | 1e-04 | |
| pfam07993 | 245 | pfam07993, NAD_binding_4, Male sterility protein | 2e-04 | |
| PLN02583 | 297 | PLN02583, PLN02583, cinnamoyl-CoA reductase | 2e-04 | |
| cd05243 | 203 | cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | 2e-04 | |
| PRK05865 | 854 | PRK05865, PRK05865, hypothetical protein; Provisio | 3e-04 | |
| TIGR04180 | 297 | TIGR04180, EDH_00030, NAD dependent epimerase/dehy | 4e-04 | |
| cd05252 | 336 | cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata | 5e-04 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 6e-04 | |
| COG1091 | 281 | COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [C | 6e-04 | |
| PLN02650 | 351 | PLN02650, PLN02650, dihydroflavonol-4-reductase | 0.001 | |
| pfam05368 | 232 | pfam05368, NmrA, NmrA-like family | 0.001 | |
| cd05244 | 207 | cd05244, BVR-B_like_SDR_a, biliverdin IX beta redu | 0.001 | |
| PLN02260 | 668 | PLN02260, PLN02260, probable rhamnose biosynthetic | 0.001 | |
| PLN02695 | 370 | PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | 0.001 | |
| cd05239 | 300 | cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, exte | 0.002 | |
| cd05269 | 272 | cd05269, TMR_SDR_a, triphenylmethane reductase (TM | 0.002 | |
| cd05253 | 332 | cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera | 0.003 |
| >gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 384 bits (988), Expect = e-131
Identities = 170/351 (48%), Positives = 220/351 (62%), Gaps = 22/351 (6%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69
+C+V+ G GF+GR LV +LL G V V D + +LDPS SSGR ++H
Sbjct: 1 SCLVVGGSGFLGRHLVEQLLRRGNPTVHVFDIRPTFELDPS----------SSGRVQFHT 50
Query: 70 VDVRDISQIKKVL--EGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRL 127
D+ D ++K +G + VF+ + D ++D Y + VQG +NV+ ACR+C V++L
Sbjct: 51 GDLTDPQDLEKAFNEKGPNVVFHTASPDHGSNDDL-YYKVNVQGTRNVIEACRKCGVKKL 109
Query: 128 VYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN-IDGLLTCALR 186
VY S+A VVF+G DI NGDE+L K QD + KA AE LVL AN+ GLLTCALR
Sbjct: 110 VYTSSASVVFNG-QDIINGDESLPYPDKHQDAYNETKALAEKLVLKANDPESGLLTCALR 168
Query: 187 PSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMV 246
P+ +FGPGD QLVP L+ AK G TKF IG G N+ DFTYVENVAHAH+ AA+AL S
Sbjct: 169 PAGIFGPGDRQLVPGLLKAAKNGKTKFQIGDGNNLFDFTYVENVAHAHILAADALLSSSH 228
Query: 247 S--VAGMAFFITNLEPIKFWDFLSIILEGLGYQR-PFIKLPTGVVWYIILLVKWIHEKLG 303
+ VAG AFFITN EPI FWDF I EGLGY+R P IKLP V Y+ L++W + LG
Sbjct: 229 AETVAGEAFFITNDEPIYFWDFARAIWEGLGYERPPSIKLPRPVALYLASLLEWTCKVLG 288
Query: 304 LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
+ + V L TR F+ A+K +GY+PVV+LEEG+ T+Q F
Sbjct: 289 KEPT---FTP-FRVALLCSTRYFNIEKAKKRLGYTPVVTLEEGIERTLQWF 335
|
This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335 |
| >gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family | Back alignment and domain information |
|---|
Score = 252 bits (645), Expect = 1e-80
Identities = 109/287 (37%), Positives = 142/287 (49%), Gaps = 22/287 (7%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCI-VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV 70
+V G GF+GR +V LL G+ VRV D S LL D Y +
Sbjct: 1 LVTGGGGFLGRHIVRLLLREGELQEVRV--------FDLRFSPELLEDFSKLQVITYIEG 52
Query: 71 DVRDISQIKKVLEGASTVFYVDA-TDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
DV D +++ L+G+ V + A D+ + V+G +NV+ AC + VR LV
Sbjct: 53 DVTDKQDLRRALQGSDVVIHTAAIIDVFGKAYRDTIMKVNVKGTQNVLDACVKAGVRVLV 112
Query: 129 YNSTADVVFD--GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DG--LL 181
Y S+ +VV I NGDET QD + KA AE LVL AN +G L
Sbjct: 113 YTSSMEVVGPNSYGQPIVNGDETTPYESTHQDPYPESKALAEKLVLKANGSTLKNGGRLY 172
Query: 182 TCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEAL 241
TCALRP+ +FG GD L P LV L K G KF G +SD YV NVA AH+ AA AL
Sbjct: 173 TCALRPAGIFGEGDPFLFPFLVRLLKNGLAKFRTGDKNVLSDRVYVGNVAWAHILAARAL 232
Query: 242 DSR--MVSVAGMAFFITNLEPIK-FWDFLSIILEGLGYQRP-FIKLP 284
S+AG +FI++ P + DF +L+ LG + P IKLP
Sbjct: 233 QDPKKASSIAGQFYFISDDTPHNSYDDFNRTLLKALGLRLPSSIKLP 279
|
The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280 |
| >gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 226 bits (578), Expect = 8e-70
Identities = 125/350 (35%), Positives = 184/350 (52%), Gaps = 24/350 (6%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69
+ +V G GF G LV +LLE G VR D ++ ++ E+ +
Sbjct: 1 SVLVTGGSGFFGERLVKQLLERGGTYVRSFDIAPP----GEALSAWQHPNI-----EFLK 51
Query: 70 VDVRDISQIKKVLEGASTVFYVDAT--DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRL 127
D+ D + +++ L GA VF+ A D Y + + V G +NV+ AC+ C V++
Sbjct: 52 GDITDRNDVEQALSGADCVFHTAAIVPLAGPRDLY--WEVNVGGTQNVLDACQRCGVQKF 109
Query: 128 VYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRP 187
VY S++ V+F G +IHNGDETL D+ + KA AE +VL AN D LLTCALRP
Sbjct: 110 VYTSSSSVIFGGQ-NIHNGDETLPYPPLDSDMYAETKAIAEIIVLEANGRDDLLTCALRP 168
Query: 188 SNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEAL--DSRM 245
+ +FGPGD LVP+L A+ G KF+ G G N+ DFTYV N+AHAH+ AA AL
Sbjct: 169 AGIFGPGDQGLVPILFEWAEKGLVKFVFGRGNNLVDFTYVHNLAHAHILAAAALVKGK-- 226
Query: 246 VSVAGMAFFITNLEPIKFWDFLSIILEGLGY-QRPFIKLPTGVVWYIILLVKWIHEKLGL 304
+++G +FIT+ EP ++ L + + LG+ RP I+L + + LL + + LG
Sbjct: 227 -TISGQTYFITDAEPHNMFELLRPVWKALGFGSRPKIRLSGPLAYCAALLSELVSFMLG- 284
Query: 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
+ S + F AQK +GY+P S EEG+ T+ +
Sbjct: 285 PYFVFSPFYVRALVT---PMYFSIAKAQKDLGYAPRYSNEEGLIETLNWY 331
|
Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331 |
| >gnl|CDD|187672 cd09812, 3b-HSD_like_1_SDR_e, 3beta-hydroxysteroid dehydrogenase (3b-HSD)-like, subgroup1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 168 bits (426), Expect = 1e-47
Identities = 108/345 (31%), Positives = 179/345 (51%), Gaps = 33/345 (9%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69
+ ++ G G+ G L L + G + D LP+ + ++ Q
Sbjct: 1 SVLITGGGGYFGFRLGCALAKSG---------VHVILFDIRRPQQELPEGI-----KFIQ 46
Query: 70 VDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMII---VQGAKNVVTACRECKVRR 126
DVRD+SQ++K + G VF++ + ++ + N +I V+G +N++ C +V R
Sbjct: 47 ADVRDLSQLEKAVAGVDCVFHIASYGMSGREQLNRELIEEINVRGTENIIQVCVRRRVPR 106
Query: 127 LVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD----LKAQAEALVLFANNI----- 177
L+Y ST +V+F G I NGDE+L + DL D K+ AE LVL ANN+
Sbjct: 107 LIYTSTFNVIF-GGQPIRNGDESLP--YLPLDLHVDHYSRTKSIAEQLVLKANNMPLPNN 163
Query: 178 DGLL-TCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236
G+L TCALRP+ ++GPG+ + +P +V+ + G F+ G +++ +F +V+N+ AH+
Sbjct: 164 GGVLRTCALRPAGIYGPGEQRHLPRIVSYIEKGLFMFVYGDPKSLVEFVHVDNLVQAHIL 223
Query: 237 AAEALDSRMVSVA-GMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLV 295
AAEAL + +A G A+FI++ P+ ++F ++EGLGY P ++LP +V++ L
Sbjct: 224 AAEALTTAKGYIASGQAYFISDGRPVNNFEFFRPLVEGLGYSFPSLRLPLSLVYFFAFLT 283
Query: 296 KWIHEKLGLRTYN-HSLSACYIVQLASRTRTFDCIAAQKHIGYSP 339
+ +H LG N L V T F A+ +GY P
Sbjct: 284 EMVHFALG-PICNFQPLLTRTEVYKTGVTHYFSIEKARAELGYEP 327
|
An uncharacterized subgroup of the 3b-HSD-like extended-SDR family. Proteins in this subgroup have the characteristic active site tetrad and NAD(P)-binding motif of extended-SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 339 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 128 bits (322), Expect = 3e-33
Identities = 86/356 (24%), Positives = 126/356 (35%), Gaps = 62/356 (17%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G GF+G LV RLL G VR D E+ +D+ D
Sbjct: 8 GAGFIGSHLVERLLAAGH-DVRGLD------------RLRDGLDPLLSGVEFVVLDLTDR 54
Query: 76 SQIKKVLEGASTVFY-----VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130
+ ++ +G D N D + V G N++ A R V+R V+
Sbjct: 55 DLVDELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFA 114
Query: 131 STADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNV 190
S+ VV+ G DE L + + K AE L+ + GL LRP NV
Sbjct: 115 SSVSVVY-GDPPPLPIDEDLG-PPRPLNPYGVSKLAAEQLLRAYARLYGLPVVILRPFNV 172
Query: 191 FGPGD-----TQLVPLLVNLAKPGWTKF-IIGSGENMSDFTYVENVAHAHVCAAEALDSR 244
+GPGD + +V + G I G G DF YV++VA A + A E D
Sbjct: 173 YGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLALENPDGG 232
Query: 245 MVSVAGMAFFITN-LEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLG 303
F I + I + + E +G + P I YI L +
Sbjct: 233 -------VFNIGSGTAEITVRELAEAVAEAVGSKAPLIV-------YIPLGRRGD----- 273
Query: 304 LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359
+ D A+ +G+ P VSLEEG++ T++
Sbjct: 274 ----------------LREGKLLDISKARAALGWEPKVSLEEGLADTLEWLLKKLE 313
|
Length = 314 |
| >gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 4e-33
Identities = 101/370 (27%), Positives = 161/370 (43%), Gaps = 47/370 (12%)
Query: 11 CVVLNGRGFVGRSLVLRLLELGKCI--VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
C+V G GF+G+ ++ LLE + + +RV D +L S ++
Sbjct: 2 CLVTGGGGFLGQHIIRLLLERKEELKEIRVLDKAFGPELIEHFEKSQGKTYVTD-----I 56
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFY-----NCYMIIVQGAKNVVTACRECK 123
+ D++D+S + + +G S V + A D F + V G + V+ AC +
Sbjct: 57 EGDIKDLSFLFRACQGVSVVIHTAAI---VDVFGPPNYEELEEVNVNGTQAVLEACVQNN 113
Query: 124 VRRLVYNSTADVVFDGS--HDIHNG--DETLTCCWKFQDLMCDLKAQAEALVLFAN---- 175
V+RLVY S+ +V I NG D K AE +VL AN
Sbjct: 114 VKRLVYTSSIEVAGPNFKGRPIFNGVEDTPYEDTSTPP--YASSKLLAENIVLNANGAPL 171
Query: 176 -NIDGLLTCALRPSNVFGPGDTQLVPLLVN--LAKPGWTKFII-GSGENMSDFTYVENVA 231
L+TCALRP ++G G + + + + L GW I GSG N YV NVA
Sbjct: 172 KQGGYLVTCALRPMYIYGEG-SHFLTEIFDFLLTNNGWLFPRIKGSGVN--PLVYVGNVA 228
Query: 232 HAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILE---GLGYQRPFIKLPTGVV 288
AH+ AA+AL ++ G +FI++ P + + L GL + + +P ++
Sbjct: 229 WAHILAAKALQVPDKAIRGQFYFISDDTPHNSYSDFNYELLKELGLRLKTSWWYVPLFLL 288
Query: 289 WYIILL---VKWIHEKLGLR---TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVS 342
+++ L V ++ LR Y + + V L + TF + AQ+H GY P+ S
Sbjct: 289 YFLAFLLEIVSFL-----LRPYVKYRPRYNR-HAVALTNSMFTFSYLKAQRHFGYMPLFS 342
Query: 343 LEEGVSSTIQ 352
EE T +
Sbjct: 343 WEESKERTAK 352
|
This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 1e-26
Identities = 88/350 (25%), Positives = 129/350 (36%), Gaps = 52/350 (14%)
Query: 18 GFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD 74
GF+G +LV LL G + +VR L E + D+ D
Sbjct: 8 GFLGSNLVRALLAQGYRVRALVRSGSDAVLLD---------------GLPVEVVEGDLTD 52
Query: 75 ISQIKKVLEGASTVFYVDA-TDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133
+ + ++G VF++ A T L D Y V+G +NV+ A E VRR+V+ S+
Sbjct: 53 AASLAAAMKGCDRVFHLAAFTSLWAKDRKELYRTNVEGTRNVLDAALEAGVRRVVHTSSI 112
Query: 134 DVVFDGSHDIHNGDETLTCCWKFQDLMCDL---KAQAEALVL-FANNIDGLLTCALRPSN 189
+ G DE T W + D K AE VL A GL + PS
Sbjct: 113 AAL--GGPPDGRIDE--TTPWNERPFPNDYYRSKLLAELEVLEAAAE--GLDVVIVNPSA 166
Query: 190 VFGPGD--TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247
VFGPGD L V G G + F V +VA H+ A E
Sbjct: 167 VFGPGDEGPTSTGLDVLDYLNGKLPAYPPGG---TSFVDVRDVAEGHIAAMEK------G 217
Query: 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGV---VWYIILLVKWIHEKLGL 304
G + + E + F + E G + P +P + V + L + K L
Sbjct: 218 RRGERYILGG-ENLSFKQLFETLAEITGVKPPRRTIPPWLLKAVAALSELKARLTGKPPL 276
Query: 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
T ++ R + A++ +GYSP LEE + T+
Sbjct: 277 LTP-------RTARVLRRNYLYSSDKARRELGYSP-RPLEEALRDTLAWL 318
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 1e-19
Identities = 64/248 (25%), Positives = 103/248 (41%), Gaps = 39/248 (15%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+V G GF+G LV RLL+ G ++ + +S L+ GR +H+ D
Sbjct: 2 LVTGGTGFIGSHLVRRLLQEGYEVIVLGRRRRSESLNT-------------GRIRFHEGD 48
Query: 72 VRDISQIKKVLEGAS--TVFYVDA---TDLNTDDFYNCYMIIVQGAKNVVTACRECKVRR 126
+ D ++++L V ++ A + +D + V G ++ A R V+R
Sbjct: 49 LTDPDALERLLAEVQPDAVIHLAAQSGVGASFEDPADFIRANVLGTLRLLEAARRAGVKR 108
Query: 127 LVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL------KAQAEALVLFANNIDGL 180
V+ S+++V D + E + L K AE LV GL
Sbjct: 109 FVFASSSEVYGDVADPP--ITED--------TPLGPLSPYAAAKLAAERLVEAYARAYGL 158
Query: 181 LTCALRPSNVFGPGD-----TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHV 235
LR NV+GPG+ T ++P L+ G ++G G DF YV++VA A +
Sbjct: 159 RAVILRLFNVYGPGNPDPFVTHVIPALIRRILEGKPILLLGDGTQRRDFLYVDDVARAIL 218
Query: 236 CAAEALDS 243
A E D
Sbjct: 219 LALEHPDG 226
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 3e-17
Identities = 94/359 (26%), Positives = 139/359 (38%), Gaps = 71/359 (19%)
Query: 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV 70
+V G GF+G LV RLLE G V V D+ L + +L ++ +
Sbjct: 2 VLVTGGAGFIGSHLVERLLERGH-EVIVLDN-----LSTGKKENLPEVK---PNVKFIEG 52
Query: 71 DVRDISQIKKVLEGASTVFYVDA---TDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRL 127
D+RD ++ EG VF+ A + +D + + V G N++ A R+ V+R
Sbjct: 53 DIRDDELVEFAFEGVDYVFHQAAQASVPRSIEDPIKDHEVNVLGTLNLLEAARKAGVKRF 112
Query: 128 VYNSTADVVFDGSHDIHNGDETLTCC----WKFQDLMCDLKAQAEALVLFANNIDGLLTC 183
VY S++ V G DE + K E + GL T
Sbjct: 113 VYASSSSVY--GDPPYLPKDEDHPPNPLSPYAVS------KYAGELYCQVFARLYGLPTV 164
Query: 184 ALRPSNVFGPG-DTQ-----LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCA 237
+LR NV+GP D ++P+ + A G I G GE DFTYVE+V A++ A
Sbjct: 165 SLRYFNVYGPRQDPNGGYAAVIPIFIERALKGEPPTIYGDGEQTRDFTYVEDVVEANLLA 224
Query: 238 AEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLP--TGVVWYIILLV 295
A A G + I + + +I E LG + + P G V
Sbjct: 225 ATA------GAGGEVYNIGTGKRTSVNELAELIREILGKELEPVYAPPRPGDV------- 271
Query: 296 KWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
HSL D A+K +G+ P VS EEG+ T++ F
Sbjct: 272 ------------RHSL--------------ADISKAKKLLGWEPKVSFEEGLRLTVEWF 304
|
This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 6e-15
Identities = 58/233 (24%), Positives = 84/233 (36%), Gaps = 49/233 (21%)
Query: 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV 70
+V G GF+G LV RLLE G H+V
Sbjct: 1 ILVTGGAGFIGSHLVRRLLERG-----------------------------------HEV 25
Query: 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130
V D + V+ A+ V + D+ + V G N++ A R+ V+R VY
Sbjct: 26 VVIDRLDV--VVHLAALV----GVPASWDNPDEDFETNVVGTLNLLEAARKAGVKRFVYA 79
Query: 131 STADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNV 190
S+A V+ E + K AE L+ GL LR +NV
Sbjct: 80 SSA-SVYG---SPEGLPEEEETPPRPLSPYGVSKLAAEHLLRSYGESYGLPVVILRLANV 135
Query: 191 FGPGD----TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239
+GPG +V + A G + G G DF +V++V A + A E
Sbjct: 136 YGPGQRPRLDGVVNDFIRRALEGKPLTVFGGGNQTRDFIHVDDVVRAILHALE 188
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|187661 cd08958, FR_SDR_e, flavonoid reductase (FR), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 8e-15
Identities = 66/250 (26%), Positives = 103/250 (41%), Gaps = 31/250 (12%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV 72
V GF+G LV RLL+ G VR T + D + LL + R + + D+
Sbjct: 3 VTGASGFIGSWLVKRLLQRGY-TVRAT--VRDPG-DEKKVAHLLELEGAKERLKLFKADL 58
Query: 73 RDISQIKKVLEGASTVFYVDAT--DLNTDDFYNCYMI--IVQGAKNVVTACRECK-VRRL 127
D ++G VF+V A+ D +++D MI V+G NV+ AC + K V+R+
Sbjct: 59 LDYGSFDAAIDGCDGVFHV-ASPVDFDSEDPEE-EMIEPAVKGTLNVLEACAKAKSVKRV 116
Query: 128 VY-NSTADVVF-DGSHDIHNGDETLTCCW-------KFQDLMCDLKAQAEALVLFANNID 178
V+ +S A VV+ + DE+ CW K + K AE +
Sbjct: 117 VFTSSVAAVVWNPNRGEGKVVDES---CWSDLDFCKKTKLWYALSKTLAEKAAWEFAEEN 173
Query: 179 GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY----VENVAHAH 234
GL + PS V GP + L + G+ E + + V++VA AH
Sbjct: 174 GLDLVTVNPSLVVGPFLQPSLNSSSQLI----LSLLKGNAEMYQNGSLALVHVDDVADAH 229
Query: 235 VCAAEALDSR 244
+ E +
Sbjct: 230 ILLYEKPSAS 239
|
This subgroup contains FRs of the extended SDR-type and related proteins. These FRs act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites; they have the characteristic active site triad of the SDRs (though not the upstream active site Asn) and a NADP-binding motif that is very similar to the typical extended SDR motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|217046 pfam02453, Reticulon, Reticulon | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 9e-15
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 384 VADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAAKFLLLLSAVLFGYGILPSNIF 443
VAD+LLW+D KK+ F L++++ F L G +L S + LLLL AV F L +
Sbjct: 1 VADLLLWRDPKKSGVVFGSLLVIWLLFSLSGYSLLSVLSYLLLLLLAVTF-LWRLAKKLL 59
Query: 444 GFNVKRISPSCFELSETVIKDSIARIAFLWNMGFRNIRLLAKGDDWNTFFKVCSAYYI 501
+ + P LSE +++ + L N + +R L G+D K ++
Sbjct: 60 NAVPEPLDPD-VTLSEETVEEIADSLRVLINKALKELRRLFLGEDLVDSLKAAVGLWL 116
|
Reticulon, also know as neuroendocrine-specific protein (NSP), is a protein of unknown function which associates with the endoplasmic reticulum. This family represents the C-terminal domain of the three reticulon isoforms and their homologues. Length = 164 |
| >gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 1e-12
Identities = 56/245 (22%), Positives = 96/245 (39%), Gaps = 42/245 (17%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+++ G GF+G LV LLE G VRV D S+ P L G +Y + D
Sbjct: 3 LIVGGNGFIGSHLVDALLEEG-PQVRVFDR------------SIPPYELPLGGVDYIKGD 49
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTA------CRECKVR 125
+ + ++ L G TV ++ +T N I+ NV C +
Sbjct: 50 YENRADLESALVGIDTVIHLASTTNPATSNKN---PILDIQTNVAPTVQLLEACAAAGIG 106
Query: 126 RLVYNSTADVVFDGSHDIHNGDETLT----CCWKFQDLMCDLKAQAEALVLFANNIDGLL 181
++++ S+ V+ G + E+ + L E + + GL
Sbjct: 107 KIIFASSGGTVY-GVPEQLPISESDPTLPISSYGISKLA------IEKYLRLYQYLYGLD 159
Query: 182 TCALRPSNVFGPGDTQ-------LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234
LR SN +GPG Q ++P+ +N G I G GE++ D+ Y++++ A
Sbjct: 160 YTVLRISNPYGPG--QRPDGKQGVIPIALNKILRGEPIEIWGDGESIRDYIYIDDLVEAL 217
Query: 235 VCAAE 239
+
Sbjct: 218 MALLR 222
|
This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 89/339 (26%), Positives = 132/339 (38%), Gaps = 47/339 (13%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL--LPDSLSSGRAEYHQV 70
V GFVG ++V LLE G VRV L S+ +L L + G
Sbjct: 5 VTGATGFVGSAVVRLLLEQG-EEVRV------LVRPTSDRRNLEGLDVEIVEG------- 50
Query: 71 DVRDISQIKKVLEGASTVFYVDA-TDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129
D+RD + ++K + G +F+V A L D Y V+G +N++ A E V R+VY
Sbjct: 51 DLRDPASLRKAVAGCRALFHVAADYRLWAPDPEEMYAANVEGTRNLLRAALEAGVERVVY 110
Query: 130 NST-ADVVFDGSHDIHNGDETLTCCWKFQDLM---CDLKAQAEALVLFANNIDGLLTCAL 185
S+ A + G DET D++ K AE L GL +
Sbjct: 111 TSSVATLGVRGDGTP--ADETTPS--SLDDMIGHYKRSKFLAEQAALEMAAEKGLPVVIV 166
Query: 186 RPSNVFGPGDTQLVP---LLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242
PS GP D + P ++V+ G + +G N+ V++VA H+ A E
Sbjct: 167 NPSTPIGPRDIKPTPTGRIIVDFLN-GKMPAYVDTGLNLVH---VDDVAEGHLLALERGR 222
Query: 243 S--RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHE 300
R +I E + L + E G P +KLP + +L V W E
Sbjct: 223 IGER---------YILGGENLTLKQILDKLAEITGRPAPRVKLPRWL----LLPVAWGAE 269
Query: 301 KLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSP 339
L T V++A + F A + +GY
Sbjct: 270 ALARLTGKEPRVTVDGVRMAKKKMFFSSAKAVRELGYRQ 308
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328 |
| >gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-10
Identities = 73/358 (20%), Positives = 130/358 (36%), Gaps = 60/358 (16%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+V GF+G L RLL G VR D S ++ L D+ R + D
Sbjct: 3 LVTGADGFIGSHLTERLLREG-HEVRALDIYNSF------NSWGLLDNAVHDRFHFISGD 55
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNC----YMIIVQGAKNVVTACRECKVRRL 127
VRD S+++ +++ VF++ A + Y V G NV+ A +R+
Sbjct: 56 VRDASEVEYLVKKCDVVFHL-AALIAIPYSYTAPLSYVETNVFGTLNVLEAACVLYRKRV 114
Query: 128 VYNSTADVV-------FDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGL 180
V+ ST++V D H + + K + K A+ L GL
Sbjct: 115 VHTSTSEVYGTAQDVPIDEDHPLLYIN-------KPRSPYSASKQGADRLAYSYGRSFGL 167
Query: 181 LTCALRPSNVFGPG--DTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238
+RP N +GP ++P +++ G +G G DF +V++ A +
Sbjct: 168 PVTIIRPFNTYGPRQSARAVIPTIISQRAIGQRLINLGDGSPTRDFNFVKDTARGFIDIL 227
Query: 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWI 298
+A+ G + E I + ++ + ++L+ +
Sbjct: 228 DAI-----EAVGEIINNGSGEEISIGNPAVELIVEELGE--------------MVLIVYD 268
Query: 299 HEKLGLRTYNHSLSACYIVQLASRTRTFDCIA-AQKHIGYSPVVSLEEGVSSTIQSFS 355
+ Y+ R I A++ +G+ P SL +G+ TI+ F
Sbjct: 269 DHREYRPGYSEV------------ERRIPDIRKAKRLLGWEPKYSLRDGLRETIEWFK 314
|
Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 5e-10
Identities = 47/189 (24%), Positives = 68/189 (35%), Gaps = 19/189 (10%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+V G +GR L RL + I LD S + EY ++D
Sbjct: 2 LVTGAAGGLGRLLARRLAASPRVI-------GVDGLDRR------RPPGSPPKVEYVRLD 48
Query: 72 VRDISQIKKVLEGASTVFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130
+RD + E + A L+ D + I V G +NV+ AC V R+V
Sbjct: 49 IRDPAAADVFREREADAVVHLAFILDPPRDGAERHRINVDGTQNVLDACAAAGVPRVVVT 108
Query: 131 STADVVFDGSHD--IHNGDETLTCCWKFQDLMCDLKAQAEALV-LFANNIDGLLTCALRP 187
S+ V + D L +F KA+ E L+ F L LRP
Sbjct: 109 SSVAVYGAHPDNPAPLTEDAPLRGSPEFAY--SRDKAEVEQLLAEFRRRHPELNVTVLRP 166
Query: 188 SNVFGPGDT 196
+ + GPG
Sbjct: 167 ATILGPGTR 175
|
Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306 |
| >gnl|CDD|187540 cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 4e-09
Identities = 65/348 (18%), Positives = 106/348 (30%), Gaps = 60/348 (17%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV 72
VL G +GR + L G + V+ S L P E D
Sbjct: 4 VLGASGPIGREVARELRRRGWDVRLVSRSGSKLAWLPG--------------VEIVAADA 49
Query: 73 RDISQIKKVLEGASTVFY---VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129
D S + GA +++ T + +NVV A +LV
Sbjct: 50 MDASSVIAAARGADVIYHCANPAYTRWEEL------FPPLM--ENVVAAAEAN-GAKLVL 100
Query: 130 NSTADVVFDGSHDIHNGDETLTC---CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALR 186
V G E K + ++A+ E +L A+ + +R
Sbjct: 101 PGN--VYMYGPQAGSPITEDTPFQPTTRKGR-----IRAEMEERLLAAHAKGDIRALIVR 153
Query: 187 PSNVFGPGDTQLVPLLVNLAK-PGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRM 245
+ +GPG A G T G+ + ++TY+ +VA A V AE D+
Sbjct: 154 APDFYGPGAINSWLGAALFAILQGKTAVFPGNLDTPHEWTYLPDVARALVTLAEEPDA-- 211
Query: 246 VSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLR 305
G A+ + I + ++I G +P + L + E
Sbjct: 212 ---FGEAWHLPGAGAITTRELIAIAARAAGRPPKVRVIPKWTLRLAGLFDPLMRE----- 263
Query: 306 TYNHSLSACYIVQLASRTRT---FDCIAAQKHIGYSPVVSLEEGVSST 350
IV++ D + G P L+E + T
Sbjct: 264 ----------IVEMMYLWEEPFILDSSKLEATFGEIPHTPLDEAIRQT 301
|
These atypical SDR family members of unknown function have a glycine-rich NAD(P)-binding motif consensus that is very similar to the extended SDRs, GXXGXXG. Generally, this group has poor conservation of the active site tetrad, However, individual sequences do contain matches to the YXXXK active site motif, and generally Tyr or Asn in place of the upstream Ser found in most SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 302 |
| >gnl|CDD|187579 cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 8e-09
Identities = 56/235 (23%), Positives = 87/235 (37%), Gaps = 53/235 (22%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELGKCIV---RVTDSTQSLQLDPSESNSLLPDSLSSGRAE 66
V GF+GR +V RL + G ++ R + L + G+
Sbjct: 2 VVTVFGATGFIGRYVVNRLAKRGSQVIVPYRCEAYARRLLV-----------MGDLGQVL 50
Query: 67 YHQVDVRDISQIKKVLEGASTVFYVDATDLNT--DDFYNCYMIIVQGAKNVVTACRECKV 124
+ + D+RD I+K LEG+ V + T F + + V+G + + A +E V
Sbjct: 51 FVEFDLRDDESIRKALEGSDVVINLVGRLYETKNFSFED---VHVEGPERLAKAAKEAGV 107
Query: 125 RRLVYNST--ADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVL--FANNIDGL 180
RL++ S AD S + + KA+ E V F
Sbjct: 108 ERLIHISALGADAN-SPSKYLRS------------------KAEGEEAVREAFPEAT--- 145
Query: 181 LTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFI--IGSGENMSDFTYVENVAHA 233
+RPS VFG D + + L + F IG G+ YV +VA A
Sbjct: 146 ---IVRPSVVFGRED-RFLNRFAKL--LAFLPFPPLIGGGQTKFQPVYVGDVAEA 194
|
This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 273 |
| >gnl|CDD|177862 PLN02214, PLN02214, cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Score = 56.7 bits (136), Expect = 1e-08
Identities = 73/255 (28%), Positives = 105/255 (41%), Gaps = 29/255 (11%)
Query: 1 MPFDEAIP--RTCVVLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSL 55
MP D A P +T V G++ +V LLE G K VR D ++ L E
Sbjct: 1 MPVDVASPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEG--- 57
Query: 56 LPDSLSSGRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNV 115
R + D++D +K ++G VF+ + TDD V GAK V
Sbjct: 58 -----GKERLILCKADLQDYEALKAAIDGCDGVFHTASP--VTDDPEQMVEPAVNGAKFV 110
Query: 116 VTACRECKVRRLVYNSTADVVF-DGSHDIHN-GDET----LTCCWKFQDLMCDLKAQAEA 169
+ A E KV+R+V S+ V+ D + D DE+ L C ++ C K AE
Sbjct: 111 INAAAEAKVKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWYCYGKMVAEQ 170
Query: 170 LVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY--- 226
G+ L P V GP L P +N + K++ GS + ++ T
Sbjct: 171 AAWETAKEKGVDLVVLNPVLVLGP---PLQP-TINASLYHVLKYLTGSAKTYANLTQAYV 226
Query: 227 -VENVAHAHVCAAEA 240
V +VA AHV EA
Sbjct: 227 DVRDVALAHVLVYEA 241
|
Length = 342 |
| >gnl|CDD|222146 pfam13460, NAD_binding_10, NADH(P)-binding | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-08
Identities = 42/189 (22%), Positives = 59/189 (31%), Gaps = 41/189 (21%)
Query: 12 VVLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
V+ G GR LV LL G + R + S P
Sbjct: 2 AVIGATGKTGRRLVKELLARGHQVTALSR--------------NPSKAPAP----GVTPV 43
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
Q D+ D++ + + L G V VDA DD G K+++ A VRR+V
Sbjct: 44 QKDLFDLADLAEALAGVDAV--VDAFGARPDD--------SDGVKHLLDAAARAGVRRIV 93
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
S A + D +A+A A L GL +RP
Sbjct: 94 VVSAAGLYRDEPG--------TFRLDDAPLFPPYARAKAAAEELLRA--SGLDWTIVRPG 143
Query: 189 NVFGPGDTQ 197
+F
Sbjct: 144 ALFDEEGET 152
|
Length = 182 |
| >gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 3e-08
Identities = 41/133 (30%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 109 VQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL----- 163
V G ++ A R+ V+R V+ ST D V+ D ET +
Sbjct: 102 VLGTYTLLEAARKYGVKRFVHIST-DEVYGDLLDDGEFTET--------SPLAPTSPYSA 152
Query: 164 -KAQAEALVLFANNIDGLLTCALRPSNVFGPG--DTQLVPLLVNLAKPGWTKFIIGSGEN 220
KA A+ LV + GL R SN +GP +L+PL + A G I G G N
Sbjct: 153 SKAAADLLVRAYHRTYGLPVVITRCSNNYGPYQFPEKLIPLFILNALDGKPLPIYGDGLN 212
Query: 221 MSDFTYVENVAHA 233
+ D+ YVE+ A A
Sbjct: 213 VRDWLYVEDHARA 225
|
This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315 |
| >gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-08
Identities = 41/183 (22%), Positives = 70/183 (38%), Gaps = 34/183 (18%)
Query: 13 VLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69
+L GF+GR+L LLE G +VR T +P +
Sbjct: 3 ILGATGFIGRALARELLEQGHEVTLLVRNTKRLSKEDQEP---------------VAVVE 47
Query: 70 VDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129
D+RD+ + ++G V ++ +T DF V+G +NV+ A +E V+ ++
Sbjct: 48 GDLRDLDSLSDAVQGVDVVIHLAGAPRDTRDFCEVD---VEGTRNVLEAAKEAGVKHFIF 104
Query: 130 NSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSN 189
S+ GD +KA+ EA++ A L +RP
Sbjct: 105 ISSLGA---------YGDLHEETEPSPSSPYLAVKAKTEAVLREA----SLPYTIVRPGV 151
Query: 190 VFG 192
++G
Sbjct: 152 IYG 154
|
Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176 |
| >gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 5e-08
Identities = 75/339 (22%), Positives = 128/339 (37%), Gaps = 58/339 (17%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ 77
GF+GR+LV +LL G+ + + + +PS + LPD S VD
Sbjct: 9 GFIGRALVDKLLSRGEEVRIAVRNAE--NAEPSVVLAELPDIDSFTDLF-LGVDA----- 60
Query: 78 IKKVLEGASTVFYVDATDLNTDDFY---NCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134
V+ A+ V ++ + Y N + + + A V+R V+ S+
Sbjct: 61 ---VVHLAARVHVMNDQGADPLSDYRKVN-----TELTRRLARAAARQGVKRFVFLSSVK 112
Query: 135 VVFDGSHDIHNGDETLTCCWKFQDLM---CDL---KAQAEALVLFANNIDGLLTCALRPS 188
V NG+ T+ + D K +AE +L DG+ LRP
Sbjct: 113 V---------NGEGTVGAPFDETDPPAPQDAYGRSKLEAERALLELGASDGMEVVILRPP 163
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHV-CAAEALDSRMVS 247
V+GPG L+ L G G+ +N ++N+ A C +
Sbjct: 164 MVYGPGVRGNFARLMRLIDRG-LPLPPGAVKNRRSLVSLDNLVDAIYLCISLP------K 216
Query: 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTY 307
A F +++ P+ + + I LG + +P G L+++ + LG R
Sbjct: 217 AANGTFLVSDGPPVSTAELVDEIRRALGKPTRLLPVPAG-------LLRFAAKLLGKR-- 267
Query: 308 NHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEG 346
++Q + +D Q +G+ P +SLEEG
Sbjct: 268 -------AVIQRLFGSLQYDPEKTQNELGWRPPISLEEG 299
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303 |
| >gnl|CDD|187561 cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 7e-08
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 15/124 (12%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+V G G S+V LL+ VR L DP +S +L++ E Q D
Sbjct: 2 LVFGATGKQGGSVVRALLKDPGFKVRA------LTRDP---SSPAAKALAAPGVEVVQGD 52
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131
+ D ++ L+G VF L TD + + KNVV A + V+ V++S
Sbjct: 53 LDDPESLEAALKGVYGVF------LVTDFWEAGGEDEIAQGKNVVDAAKRAGVQHFVFSS 106
Query: 132 TADV 135
DV
Sbjct: 107 VPDV 110
|
NmrA and HSCARG like proteins. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 242 |
| >gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 8e-08
Identities = 57/253 (22%), Positives = 87/253 (34%), Gaps = 41/253 (16%)
Query: 13 VLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQ--SLQLDPSESNSLLPDSLSSGRAEY 67
V GFV +V +LLE G + VR + + LD L GR E
Sbjct: 3 VTGASGFVASHVVEQLLERGYKVRATVRDPSKVKKVNHLLD-------LDA--KPGRLEL 53
Query: 68 HQVDVRDISQIKKVLEGASTVFYVDA-TDLNTDDFYNCYMIIVQGAKNVVTACRECK-VR 125
D+ D +V++G + VF+V ++ D + G N + A K V+
Sbjct: 54 AVADLTDEQSFDEVIKGCAGVFHVATPVSFSSKDPNEVIKPAIGGTLNALKAAAAAKSVK 113
Query: 126 RLVYNSTADVVF--DGSHDIHNGDETLTCCWKFQDLMCDL----------KAQAEALVL- 172
R V S+A V + + DE W ++ D K AE
Sbjct: 114 RFVLTSSAGSVLIPKPNVEGIVLDEK---SWNLEEFDSDPKKSAWVYAASKTLAEKAAWK 170
Query: 173 FA--NNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT-KFIIGSGENMSD---FTY 226
FA NNID + P+ G P A T + + + +
Sbjct: 171 FADENNID---LITVIPTLTIGTIFDSETPSSSGWAMSLITGNEGVSPALALIPPGYYVH 227
Query: 227 VENVAHAHVCAAE 239
V ++ AH+ E
Sbjct: 228 VVDICLAHIGCLE 240
|
This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295 |
| >gnl|CDD|187556 cd05245, SDR_a2, atypical (a) SDRs, subgroup 2 | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 64/298 (21%), Positives = 104/298 (34%), Gaps = 64/298 (21%)
Query: 11 CVVLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEY 67
+V G+VG LV RLL+ G + +VR + D S R
Sbjct: 1 VLVTGATGYVGGRLVPRLLQEGHQVRALVRSPEKLA--------------DRPWSERVTV 46
Query: 68 HQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRL 127
+ D+ D ++ LEG T +Y+ + + DF + A+N A R V+R+
Sbjct: 47 VRGDLEDPESLRAALEGIDTAYYLVHSMGSGGDFEE---ADRRAARNFARAARAAGVKRI 103
Query: 128 VYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAE-ALVLFANNIDGLLTCALR 186
+Y I G+E L L+++AE +L A + LR
Sbjct: 104 IYLGGL---------IPKGEE----------LSPHLRSRAEVGEILRAGGVP---VTELR 141
Query: 187 PSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEA 240
+ + G G LV L + P W + +V V A +
Sbjct: 142 AAVIIGSGSASFEMVRYLVERLPVMITPRWVN-------TPCQPIAIRDVLEYLVAALDR 194
Query: 241 LDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWI 298
+ AG F I + + + D + E G +R + +P V L W+
Sbjct: 195 PAT-----AGETFEIGGPDVLSYKDMMERFAEVRGLRRWILPVP---VLTPRLSSLWV 244
|
This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 68/301 (22%), Positives = 110/301 (36%), Gaps = 43/301 (14%)
Query: 11 CVVLNGRGFVGRSLVLRLLELGK---CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEY 67
V G GF+GR LV RLLE G +VR ++ + + L + R
Sbjct: 1 VFVTGGTGFLGRHLVKRLLENGFKVLVLVRSESLGEAHER-------IEEAGLEADRVR- 52
Query: 68 HQVDVRDISQI---------KKVLEGASTVFYVDA-TDLNTDDFYNCYMIIVQGAKNVVT 117
V D++Q +++ V + A D + + + G ++V+
Sbjct: 53 --VLEGDLTQPNLGLSAAASRELAGKVDHVIHCAASYDFQAP-NEDAWRTNIDGTEHVLE 109
Query: 118 ACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI 177
++R Y STA V G+ + + + L F++ KA+AE LV A
Sbjct: 110 LAARLDIQRFHYVSTAYV--AGNREGNIRETELNPGQNFKNPYEQSKAEAEQLVRAAATQ 167
Query: 178 DGLLTCALRPSNVFGP---GDTQ----LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENV 230
L RPS V G G + L LL LAK G + G+ + V+ V
Sbjct: 168 IPLTV--YRPSIVVGDSKTGRIEKIDGLYELLNLLAKLGRWLPMPGNKGARLNLVPVDYV 225
Query: 231 AHAHVCAAEALDSRMVSVAGMAFFITNLEPI---KFWDFLSIILEGLGYQRPFIKLPTGV 287
A A V ++ ++ G F +T+ P + D G + P
Sbjct: 226 ADAIVYLSKKPEA-----NGQIFHLTDPTPQTLREIADLFKSAFLSPGLLVLLMNEPNAS 280
Query: 288 V 288
+
Sbjct: 281 L 281
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 5e-07
Identities = 64/285 (22%), Positives = 105/285 (36%), Gaps = 55/285 (19%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ 77
GF+ +V +LL+ G VR T + S ++ +LL + + R E+ VD D++
Sbjct: 9 GFIASHIVEQLLKAG-YKVRGTVRSLS---KSAKLKALLKAAGYNDRLEFVIVD--DLTA 62
Query: 78 ---IKKVLEG-------ASTVFYVDATDLNTDDFYNCYMII--VQGAKNVVTACRECK-V 124
+ L+G AS + DD +I V+G NV+ A + V
Sbjct: 63 PNAWDEALKGVDYVIHVASPFPFTGPD--AEDD-----VIDPAVEGTLNVLEAAKAAGSV 115
Query: 125 RRLVYNSTADVVFDGSHDIHNGDETLT------CCWKFQDLM---CDLKAQAE--ALVLF 173
+R+V S+ V D + + + T + + K AE A
Sbjct: 116 KRVVLTSSVAAVGDPTAEDP--GKVFTEEDWNDLTISKSNGLDAYIASKTLAEKAAWEFV 173
Query: 174 ANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT-KFIIGSGEN-----MSDFTYV 227
N + P V GP L+ +N + K + G + V
Sbjct: 174 KENKPKFELITINPGYVLGP---SLLADELN-SSNELINKLLDGKLPAIPPNLPFGYVDV 229
Query: 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILE 272
+VA AHV AL+S AG F ++ P F + ++ E
Sbjct: 230 RDVADAHV---RALESP--EAAGQRFIVSA-GPFSFQEIADLLRE 268
|
This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301 |
| >gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 9e-06
Identities = 77/387 (19%), Positives = 118/387 (30%), Gaps = 122/387 (31%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69
+V GF+G L RL G + + P++ + E+H
Sbjct: 2 RALVTGAGGFIGSHLAERLKAEGHYVRGADWKSPEHMTQPTDDD------------EFHL 49
Query: 70 VDVRDISQIKKVLEGASTVFYVDA--------TDLNTDDFYNCYMIIVQGAKNVVTACRE 121
VD+R++ K EG VF++ A + YN +I N++ A R
Sbjct: 50 VDLREMENCLKATEGVDHVFHLAADMGGMGYIQSNHAVIMYNNTLI----NFNMLEAARI 105
Query: 122 CKVRRLVYNSTA-------------------DVVFDGSHDIHNGDETLTCCWKFQDLMCD 162
V R ++ S+A D D + W+
Sbjct: 106 NGVERFLFASSACVYPEFKQLETTVVRLREEDAWPAEPQDAYG--------WE------- 150
Query: 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGP-----GDTQLVPLL----VNLAKPGWTKF 213
K E L N G+ T +R N++GP G + P V AK G
Sbjct: 151 -KLATERLCQHYNEDYGIETRIVRFHNIYGPRGTWDGGREKAPAAMCRKVATAKDGDRFE 209
Query: 214 IIGSGENMSDFTYVENVAHAHVCAAEAL--------DSRMVSVAGMAFFITNLEPIKFWD 265
I G G FTY+++ E+ MVS+ +A + +
Sbjct: 210 IWGDGLQTRSFTYIDDCVEGLRRLMESDFGEPVNLGSDEMVSMNELAEMVLSFS----GK 265
Query: 266 FLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRT 325
L II + P P GV R R
Sbjct: 266 PLEII-----HHTP---GPQGV----------------------------------RGRN 283
Query: 326 FDCIAAQKHIGYSPVVSLEEGVSSTIQ 352
D ++ +G+ P LEEG+ T
Sbjct: 284 SDNTLLKEELGWEPNTPLEEGLRITYF 310
|
This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328 |
| >gnl|CDD|215100 PLN00198, PLN00198, anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 7e-05
Identities = 73/256 (28%), Positives = 112/256 (43%), Gaps = 35/256 (13%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+T V+ G GF+ L+ LL+ G + +T + + + L G +
Sbjct: 10 KTACVIGGTGFLASLLIKLLLQKGYAV-----NTTVRDPENQKKIAHLRALQELGDLKIF 64
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLN--TDDFYNCYMI--IVQGAKNVVTACRECK- 123
D+ D + + G VF+V AT +N ++D N MI +QG NV+ AC + K
Sbjct: 65 GADLTDEESFEAPIAGCDLVFHV-ATPVNFASEDPEN-DMIKPAIQGVHNVLKACAKAKS 122
Query: 124 VRRLVYNSTADVV----FDGSHDIHNGD-----ETLTCCWKFQDLMCDLKAQAE-ALVLF 173
V+R++ S+A V G+ + N E LT K AE A F
Sbjct: 123 VKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPPTWGYPASKTLAEKAAWKF 182
Query: 174 A--NNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT--KFIIGSGENMS------D 223
A NNID L+T P+ + GP T +P ++LA T +F+I + M
Sbjct: 183 AEENNID-LITVI--PTLMAGPSLTSDIPSSLSLAMSLITGNEFLINGLKGMQMLSGSIS 239
Query: 224 FTYVENVAHAHVCAAE 239
T+VE+V AH+ AE
Sbjct: 240 ITHVEDVCRAHIFLAE 255
|
Length = 338 |
| >gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 67/277 (24%), Positives = 108/277 (38%), Gaps = 38/277 (13%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+V G GF+G LV RLLE G V V D+ S + + E + + + D
Sbjct: 3 LVTGGAGFIGSHLVDRLLEEGN-EVVVVDNLSSGRRENIEP------EFENKAFRFVKRD 55
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTD----------DFYNCYMIIVQGAKNVVTACRE 121
+ D + K + TVF++ A N D D V NV+ A R
Sbjct: 56 LLDTA-DKVAKKDGDTVFHLAA---NPDVRLGATDPDIDLEEN----VLATYNVLEAMRA 107
Query: 122 CKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLL 181
V+R+V+ S++ V G + E + K AEAL+ ++ G
Sbjct: 108 NGVKRIVFASSSTVY--GEAKVIPTPEDYPP--LPISVYGASKLAAEALISAYAHLFGFQ 163
Query: 182 TCALRPSNVFGPGDTQ-LVPLLVN--LAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238
R +N+ GP T ++ +N P ++G G + YV + A + A
Sbjct: 164 AWIFRFANIVGPRSTHGVIYDFINKLKRNPN-ELEVLGDGRQRKSYLYVSDCVDAMLLAW 222
Query: 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLG 275
E V++ F + N + I + I++E LG
Sbjct: 223 EKSTEG-VNI----FNLGNDDTISVNEIAEIVIEELG 254
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 54/258 (20%), Positives = 82/258 (31%), Gaps = 61/258 (23%)
Query: 18 GFVGRSLVLRLLELGK-----CIVRVTDSTQSLQ-LDPS-ESNSLLPDSLSSGRAEYHQV 70
GF+G+ L+ +LL C+VR D +L+ L L + R +
Sbjct: 6 GFLGKVLLEKLLRSTPEVKIYCLVRAKDGESALERLRQELLKYGLFDRLKALER-----I 60
Query: 71 DVR--DISQIKKVLEGASTVFYVDATDL--NTDDFYNC-------------YMIIVQGAK 113
D+S+ L D +L D + V G +
Sbjct: 61 IPVAGDLSEPNLGLSDE------DFQELAEEVDVIIHNAATVNFVEPYSDLRATNVLGTR 114
Query: 114 NVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL---------- 163
V+ ++ K + STA +G ++ K + L
Sbjct: 115 EVLRLAKQMKKLPFHHVSTA--YVNGERGGLLEEKPY----KLDEDEPALLGGLPNGYTQ 168
Query: 164 -KAQAEALVLFANNIDGLLTCALRPSNVFG-------PGDTQLVPLLVNLAKPGWTKFII 215
K AE LV A GL RPS + G GD L+ A G I+
Sbjct: 169 SKWLAEQLVREAA--GGLPVVIYRPSIITGESRTGWINGDDFGPRGLLGGAGLGVLPDIL 226
Query: 216 GSGENMSDFTYVENVAHA 233
G + D V+ VA+A
Sbjct: 227 GDPDARLDLVPVDYVANA 244
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245 |
| >gnl|CDD|178195 PLN02583, PLN02583, cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 59/256 (23%), Positives = 94/256 (36%), Gaps = 42/256 (16%)
Query: 3 FDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSS 62
FDE+ + V++ G+VG LV RLL G + +++ S
Sbjct: 2 FDESSK-SVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGL----SCEE 56
Query: 63 GRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCY---MII--VQGAKNVVT 117
R + VD D I L+G S +F + Y Y M+ V+ A NV+
Sbjct: 57 ERLKVFDVDPLDYHSILDALKGCSGLFCC----FDPPSDYPSYDEKMVDVEVRAAHNVLE 112
Query: 118 ACRECK-VRRLVYNSTADVVF---DGSHDIHNGDET----LTCCWKFQDLMCDLKAQAEA 169
AC + + ++V+ S+ V D + DE C KF+ K +E
Sbjct: 113 ACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRKFKLWHALAKTLSEK 172
Query: 170 LVLFANNID-GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD---FT 225
+A +D G+ ++ + GP TQ P L A+ M +
Sbjct: 173 TA-WALAMDRGVNMVSINAGLLMGPSLTQHNPYLKGAAQ-------------MYENGVLV 218
Query: 226 YV--ENVAHAHVCAAE 239
V + AH+ A E
Sbjct: 219 TVDVNFLVDAHIRAFE 234
|
Length = 297 |
| >gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 20/118 (16%)
Query: 18 GFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD 74
G VGR +V LL+ G + +VR DPS++ L D+ D
Sbjct: 9 GKVGRHVVRELLDRGYQVRALVR----------DPSQAEKLEAAGAEVVVG-----DLTD 53
Query: 75 ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132
+ LEG V + A + G N++ A ++ V+R V S+
Sbjct: 54 AESLAAALEGIDAV--ISAAGSGGKGGPRTEAVDYDGNINLIDAAKKAGVKRFVLVSS 109
|
This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203 |
| >gnl|CDD|235630 PRK05865, PRK05865, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 3e-04
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 21/120 (17%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV 72
V G +GR L RLL G +V + PDS S A++ D+
Sbjct: 5 VTGASGVLGRGLTARLLSQGHEVVGIARHR--------------PDSWPS-SADFIAADI 49
Query: 73 RDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132
RD + ++ + GA V + A +D N + G NV+ A E R+V+ S+
Sbjct: 50 RDATAVESAMTGADVVAHC-AWVRGRNDHIN-----IDGTANVLKAMAETGTGRIVFTSS 103
|
Length = 854 |
| >gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 35/136 (25%), Positives = 52/136 (38%), Gaps = 37/136 (27%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQ----LDPSESNSLLPDSLSSGRAEYHQVDVR 73
GF+G LV L+ G VR S LD S + E D+R
Sbjct: 8 GFIGSHLVEALVRQG-YEVRAFVLYNSFNSWGWLDTSPPEVK-------DKIEVVTGDIR 59
Query: 74 DISQIKKVLEGASTVFYVDA--------------TDLNTDDFYNCYMIIVQGAKNVVTAC 119
D ++K ++G VF++ A D N V G NV+ A
Sbjct: 60 DPDSVRKAMKGCDVVFHLAALIAIPYSYIAPDSYVDTN-----------VTGTLNVLQAA 108
Query: 120 RECKVRRLVYNSTADV 135
R+ V ++V+ ST++V
Sbjct: 109 RDLGVEKVVHTSTSEV 124
|
This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297 |
| >gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 72/367 (19%), Positives = 125/367 (34%), Gaps = 86/367 (23%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV-DVRDIS 76
GF G L L L ELG ++ LDP + +L + + D+RD++
Sbjct: 14 GFKGSWLSLWLQELGAKVI-------GYSLDPPTNPNLF-ELANLDNKISSTRGDIRDLN 65
Query: 77 QIKKVLE--GASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131
+++ + VF++ A L + D + V G N++ A RE + V N
Sbjct: 66 ALREAIREYEPEIVFHLAAQPLVRLSYKDPVETFETNVMGTVNLLEAIRETGSVKAVVNV 125
Query: 132 TADVVFD--------------GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFA--- 174
T+D ++ G HD ++ + C +L + F
Sbjct: 126 TSDKCYENKEWGWGYRENDPLGGHDPYSSSK--GC--------AELIISSYRNSFFNPEN 175
Query: 175 NNIDGLLTCALRPSNVFGPGD---TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVA 231
G+ + R NV G GD ++VP + + G + II + + + +V
Sbjct: 176 YGKHGIAIASARAGNVIGGGDWAEDRIVPDCIRAFEAG-ERVIIRNPNAIRPWQHVLEPL 234
Query: 232 HAHVCAAEALDSRMVSVAGMAFFITNLEP-----IKFWDFLSIILEGLG-YQRPFIKLPT 285
++ AE L R A A+ N P + + + + G R
Sbjct: 235 SGYLLLAEKLYERGEEYAE-AW---NFGPDDEDAVTVLELVEAMARYWGEDARW------ 284
Query: 286 GVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEE 345
L +H A DC A+ +G+ P +LEE
Sbjct: 285 -----------------DLDGNSHPHEA--------NLLKLDCSKAKTMLGWRPRWNLEE 319
Query: 346 GVSSTIQ 352
+ T+
Sbjct: 320 TLEFTVA 326
|
This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 6e-04
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 8/129 (6%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+T +V G G +G LV ++L+ G + V D ++ + L + +
Sbjct: 3 KTILVTGGAGSIGSELVRQILKFGPKKLIVFDRDENKLHELVRE---LRSRFPHDKLRFI 59
Query: 69 QVDVRDISQIKKVLE--GASTVFYVDAT---DLNTDDFYNCYMIIVQGAKNVVTACRECK 123
DVRD ++++ + G VF+ A D+ V G KNV+ A E
Sbjct: 60 IGDVRDKERLRRAFKERGPDIVFHAAALKHVPSMEDNPEEAIKTNVLGTKNVIDAAIENG 119
Query: 124 VRRLVYNST 132
V + V ST
Sbjct: 120 VEKFVCIST 128
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 6e-04
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 68 HQVDVRDISQIKKVLEGA------STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRE 121
++D+ D + +V+ + Y D + + + GA+N+ A E
Sbjct: 32 AELDITDPDAVLEVIRETRPDVVINAAAYTAV-DKAESEPELAFAVNATGAENLARAAAE 90
Query: 122 CKVRRLVYNSTADVVFDGS 140
RLV+ ST D VFDG
Sbjct: 91 VGA-RLVHIST-DYVFDGE 107
|
Length = 281 |
| >gnl|CDD|178256 PLN02650, PLN02650, dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVT--DSTQSLQLDPSESNSLLPDSLSSGRAEY 67
T V GF+G LV+RLLE G VR T D ++ LL ++ R
Sbjct: 7 TVCVTGASGFIGSWLVMRLLERGY-TVRATVRDPANVKKVKH-----LLDLPGATTRLTL 60
Query: 68 HQVDVRDISQIKKVLEGASTVFYVDAT--DLNTDDFYNCYMII---VQGAKNVVTACREC 122
+ D+ + G + VF+V AT D + D N +I V G +++ AC +
Sbjct: 61 WKADLAVEGSFDDAIRGCTGVFHV-ATPMDFESKDPEN--EVIKPTVNGMLSIMKACAKA 117
Query: 123 K-VRRLVYNSTADVV 136
K VRR+V+ S+A V
Sbjct: 118 KTVRRIVFTSSAGTV 132
|
Length = 351 |
| >gnl|CDD|191263 pfam05368, NmrA, NmrA-like family | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 47/212 (22%), Positives = 72/212 (33%), Gaps = 56/212 (26%)
Query: 12 VVLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+V G+ G S+V L+ G + +VR + S L SL + E
Sbjct: 2 LVFGATGYQGGSVVRASLKAGHPVRALVR-------------DPKSELAKSLKAAGVELV 48
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
+ D+ D + + L+G VF V + I G K + A +E V+ +
Sbjct: 49 EGDLDDHESLVEALKGVDVVFSVTG--------FWLSKEIEDG-KKLADAAKEAGVKHFI 99
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAE-------------ALVLFAN 175
+ + V D NG E + D KA+ E F
Sbjct: 100 PSEFGNDV-----DRSNGVEPAVPHF-------DSKAEVERYIRALGIPYTFVYAGFFMG 147
Query: 176 NIDGLL--TCALRPS----NVFGPGDTQLVPL 201
N L L P + GPG+ + VPL
Sbjct: 148 NFLSNLAPPGDLAPPRDKVTLLGPGNPKAVPL 179
|
NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families. Length = 232 |
| >gnl|CDD|187555 cd05244, BVR-B_like_SDR_a, biliverdin IX beta reductase (BVR-B, aka flavin reductase)-like proteins; atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 41/170 (24%), Positives = 64/170 (37%), Gaps = 16/170 (9%)
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
Q DV D+ +K+ LEG V + A D +G +N+V+A + V+RL+
Sbjct: 47 QGDVLDLEDVKEALEGQDAV--ISALGTRNDLSPTTLH--SEGTRNIVSAMKAAGVKRLI 102
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL-KAQAEAL-VLFANNIDGLLTCALR 186
A GS D + F + + + A L VL + +D A+R
Sbjct: 103 VVGGA-----GSLDDRPKVTLVLDTLLFPPALRRVAEDHARMLKVLRESGLDWT---AVR 154
Query: 187 PSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236
P +F G T + L I S +++ F E HV
Sbjct: 155 PPALFDGGATGGYYRVELLVDAKGGSRI--SRADLAIFMLDELETPEHVR 202
|
Human BVR-B catalyzes pyridine nucleotide-dependent production of bilirubin-IX beta during fetal development; in the adult BVR-B has flavin and ferric reductase activities. Human BVR-B catalyzes the reduction of FMN, FAD, and riboflavin. Recognition of flavin occurs mostly by hydrophobic interactions, accounting for the broad substrate specificity. Atypical SDRs are distinct from classical SDRs. BVR-B does not share the key catalytic triad, or conserved tyrosine typical of SDRs. The glycine-rich NADP-binding motif of BVR-B is GXXGXXG, which is similar but not identical to the pattern seen in extended SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 207 |
| >gnl|CDD|215146 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGD--TQLVPLLVNLAKPGWTKFIIGSGENM 221
KA AE LV+ GL R +NV+GP +L+P + LA G I G G N+
Sbjct: 163 KAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNV 222
Query: 222 SDFTYVENVAHA 233
+ Y E+VA A
Sbjct: 223 RSYLYCEDVAEA 234
|
Length = 668 |
| >gnl|CDD|178298 PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 27/134 (20%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
R C+ G GF+ + RL G I+ +D ++ + S + E+H
Sbjct: 23 RICITGAG-GFIASHIARRLKAEGHYII-ASDWKKNEHM----SEDMFCH-------EFH 69
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDF---------YNCYMIIVQGAKNVVTAC 119
VD+R + KV +G VF + A D+ F YN MI + N++ A
Sbjct: 70 LVDLRVMENCLKVTKGVDHVFNL-AADMGGMGFIQSNHSVIMYNNTMI----SFNMLEAA 124
Query: 120 RECKVRRLVYNSTA 133
R V+R Y S+A
Sbjct: 125 RINGVKRFFYASSA 138
|
Length = 370 |
| >gnl|CDD|187550 cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 54/261 (20%), Positives = 90/261 (34%), Gaps = 74/261 (28%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
RG VG ++V L G N + S ++D+ D
Sbjct: 7 HRGLVGSAIVRVLARRGYE------------------NVVFRTS--------KELDLTDQ 40
Query: 76 SQIKKVLEG---------ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRR 126
++ E A+ V + A DF ++I NV+ A V++
Sbjct: 41 EAVRAFFEKEKPDYVIHLAAKVGGIVANMTYPADFLRDNLLIND---NVIHAAHRFGVKK 97
Query: 127 LV-------YNSTADVVFDGSHDIHNG-----DETLTCCWKFQDLMCD-LKAQAEALVLF 173
LV Y A D S D+ G +E + +C+ + Q
Sbjct: 98 LVFLGSSCIYPDLAPQPIDES-DLLTGPPEPTNEGYAIAKRAGLKLCEAYRKQY------ 150
Query: 174 ANNIDGLLTCALRPSNVFGPGD------TQLVPLLVN---LAK-PGWTKFII-GSGENMS 222
G ++ P+N++GP D + ++P L+ AK G + + GSG
Sbjct: 151 -----GCDYISVMPTNLYGPHDNFDPENSHVIPALIRKFHEAKLRGGKEVTVWGSGTPRR 205
Query: 223 DFTYVENVAHAHVCAAEALDS 243
+F Y +++A A V E D
Sbjct: 206 EFLYSDDLARAIVFLLENYDE 226
|
GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|187578 cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 27/125 (21%)
Query: 13 VLNGRGFVGRSLVLRLLELGK---CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69
V G +G ++V LL +VR + ++ D E Q
Sbjct: 3 VTGATGKLGTAVVELLLAKVASVVALVRNPEKAKAFAADG---------------VEVRQ 47
Query: 70 VDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129
D D +++ EG + + + D + +Q KN + A ++ V+ +VY
Sbjct: 48 GDYDDPETLERAFEGVDRLLLI-----SPSDLEDR----IQQHKNFIDAAKQAGVKHIVY 98
Query: 130 NSTAD 134
S +
Sbjct: 99 LSASG 103
|
TMR is an atypical NADP-binding protein of the SDR family. It lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Proteins in this subgroup however, are more similar in length to the classical SDRs. TMR was identified as a reducer of triphenylmethane dyes, important environmental pollutants. This subgroup also includes Escherichia coli NADPH-dependent quinine oxidoreductase (QOR2), which catalyzes two-electron reduction of quinone; but is unlikely to play a major role in protecting against quinone cytotoxicity. Atypical SDRs are distinct from classical SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 272 |
| >gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 60/263 (22%), Positives = 91/263 (34%), Gaps = 62/263 (23%)
Query: 111 GAKNVVTACRECKVRRLVYNSTADV------VFDGSHDIHNGDETLTCCWKFQDLMCDLK 164
G N++ CR V+ LVY S++ V + D D ++ L K
Sbjct: 106 GFLNLLELCRHFGVKHLVYASSSSVYGLNTKMPFSEDD--RVDHPIS-------LYAATK 156
Query: 165 AQAEALVLFANNIDGLLTCALRPSNVFGP-GDTQLVPLL-VNLAKPGWTKFIIGSGENMS 222
E + +++ G+ T LR V+GP G + L G + G
Sbjct: 157 KANELMAHTYSHLYGIPTTGLRFFTVYGPWGRPDMALFLFTKAILEGKPIDVFNDGNMSR 216
Query: 223 DFTYVENVAHAHVCA------------AEALDSRMVSVAGMAFFITNLEPIKFWDFLSII 270
DFTY++++ V A AEA D S + I N P+K DF+ +
Sbjct: 217 DFTYIDDIVEGVVRALDTPAKPNPNWDAEAPDPSTSSAPYRVYNIGNNSPVKLMDFIEAL 276
Query: 271 LEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTF-DCI 329
+ LG K L + Q T+ D
Sbjct: 277 EKALG-------------------KKAKKNYLPM-------------QKGDVPETYADIS 304
Query: 330 AAQKHIGYSPVVSLEEGVSSTIQ 352
Q+ +GY P SLEEGV ++
Sbjct: 305 KLQRLLGYKPKTSLEEGVKRFVE 327
|
This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 520 | |||
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 100.0 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 100.0 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 100.0 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 100.0 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 100.0 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 100.0 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 100.0 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 100.0 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 100.0 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 100.0 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 100.0 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 100.0 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 100.0 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 100.0 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 100.0 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 100.0 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 100.0 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 100.0 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 100.0 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 100.0 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 100.0 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 100.0 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 100.0 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 100.0 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 100.0 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 100.0 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 100.0 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 100.0 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 100.0 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 100.0 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 100.0 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 100.0 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 100.0 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 100.0 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 100.0 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 100.0 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 100.0 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 100.0 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 100.0 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 100.0 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 100.0 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 100.0 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 100.0 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 100.0 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 100.0 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 100.0 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 100.0 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 100.0 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 100.0 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 99.98 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.98 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 99.97 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.97 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.97 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.97 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.96 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.95 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.95 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.94 | |
| KOG1792 | 230 | consensus Reticulon [Intracellular trafficking, se | 99.94 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 99.93 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.93 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.93 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.92 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 99.9 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.89 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.89 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.89 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 99.89 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.88 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.87 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.86 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.86 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.85 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.85 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.85 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.84 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.84 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.84 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.84 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.83 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.83 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.81 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.81 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.81 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.81 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.81 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.81 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.8 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 99.8 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.8 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.79 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.79 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.78 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.78 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.78 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.78 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.78 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.77 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.77 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.76 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.76 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.75 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.75 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.75 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.75 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.74 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.74 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.74 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.74 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.73 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.73 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.73 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.73 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.73 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.73 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.73 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.72 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.72 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.72 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.72 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.72 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.71 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.71 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.71 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.7 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.7 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.7 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.7 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.7 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.7 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.69 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.69 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.68 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.68 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.68 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.68 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.67 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.67 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.67 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.66 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.66 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.65 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.64 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.64 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.62 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.62 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.62 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.62 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.61 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.61 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.6 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 99.6 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.6 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.59 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.59 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.59 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.58 | |
| KOG3019 | 315 | consensus Predicted nucleoside-diphosphate sugar e | 99.58 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.57 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.57 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.57 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.57 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.57 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.57 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.57 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.56 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.56 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.55 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.54 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.54 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.54 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.53 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.53 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.52 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.51 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.5 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.5 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.5 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.49 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.49 | |
| PF02453 | 169 | Reticulon: Reticulon; InterPro: IPR003388 Eukaryot | 99.49 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.48 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.47 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.47 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.46 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.46 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.45 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.43 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.43 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.42 | |
| KOG4288 | 283 | consensus Predicted oxidoreductase [General functi | 99.42 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.38 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 99.37 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.36 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 99.35 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.35 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 99.32 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.28 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.27 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 99.26 | |
| PLN00015 | 308 | protochlorophyllide reductase | 99.25 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 99.25 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.24 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 99.21 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.19 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 99.19 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.15 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 99.1 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 99.09 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 99.09 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 99.08 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.07 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 99.07 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 99.06 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.03 | |
| PLN00106 | 323 | malate dehydrogenase | 99.01 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 99.0 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 98.98 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 98.89 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 98.65 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 98.62 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.6 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 98.59 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 98.53 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 98.52 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 98.43 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.34 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 98.33 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 98.22 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 98.19 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 98.16 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.16 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 98.13 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 98.09 | |
| PF13950 | 62 | Epimerase_Csub: UDP-glucose 4-epimerase C-term sub | 98.08 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 98.02 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 97.82 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.57 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.56 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 97.55 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 97.55 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 97.53 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 97.49 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.47 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.44 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 97.41 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.35 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.3 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.26 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 97.25 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 97.23 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.18 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.15 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.14 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 97.11 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 97.09 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 97.04 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 97.02 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 97.02 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.02 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 97.02 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.02 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.01 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.01 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.0 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 96.98 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 96.96 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 96.9 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 96.88 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 96.85 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 96.79 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.78 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.69 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.68 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 96.66 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 96.64 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 96.63 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 96.6 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.6 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 96.58 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 96.56 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 96.54 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 96.53 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 96.51 | |
| PRK08057 | 248 | cobalt-precorrin-6x reductase; Reviewed | 96.47 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.45 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 96.44 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 96.39 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.38 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 96.36 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 96.34 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 96.3 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 96.27 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 96.27 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 96.24 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.23 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.22 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 96.19 | |
| PRK08223 | 287 | hypothetical protein; Validated | 96.17 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 96.17 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 96.16 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 96.15 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 96.13 | |
| PLN02602 | 350 | lactate dehydrogenase | 96.05 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 96.04 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 96.0 | |
| KOG1496 | 332 | consensus Malate dehydrogenase [Energy production | 95.99 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 95.94 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 95.89 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 95.88 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 95.83 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 95.79 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 95.73 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 95.65 | |
| cd01493 | 425 | APPBP1_RUB Ubiquitin activating enzyme (E1) subuni | 95.61 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 95.59 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 95.56 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 95.55 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 95.52 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 95.45 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 95.44 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 95.43 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 95.36 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 95.34 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 95.26 | |
| PRK07411 | 390 | hypothetical protein; Validated | 95.25 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 95.24 | |
| PF02571 | 249 | CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: | 95.22 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.16 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 95.12 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 95.03 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 94.95 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 94.94 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 94.93 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 94.88 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 94.85 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 94.82 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 94.81 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 94.65 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 94.6 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 94.53 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 94.47 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 94.42 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 94.42 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 94.4 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 94.36 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 94.26 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 93.8 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 93.74 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.71 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 93.61 | |
| PRK06901 | 322 | aspartate-semialdehyde dehydrogenase; Provisional | 93.58 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 93.53 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.48 | |
| COG2099 | 257 | CobK Precorrin-6x reductase [Coenzyme metabolism] | 93.44 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 93.37 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 93.34 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 93.29 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 93.21 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 93.21 | |
| KOG2018 | 430 | consensus Predicted dinucleotide-utilizing enzyme | 93.15 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 93.14 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 93.12 | |
| TIGR03693 | 637 | ocin_ThiF_like putative thiazole-containing bacter | 93.11 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 93.08 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 93.03 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 92.96 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 92.87 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 92.81 | |
| KOG0172 | 445 | consensus Lysine-ketoglutarate reductase/saccharop | 92.6 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 92.51 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 92.49 | |
| COG0027 | 394 | PurT Formate-dependent phosphoribosylglycinamide f | 92.45 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 92.44 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 92.34 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.34 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 92.25 | |
| TIGR01408 | 1008 | Ube1 ubiquitin-activating enzyme E1. This model re | 92.22 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 92.21 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 92.19 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 92.19 | |
| TIGR01142 | 380 | purT phosphoribosylglycinamide formyltransferase 2 | 92.19 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 92.18 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 92.17 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.15 | |
| PF08732 | 410 | HIM1: HIM1; InterPro: IPR014843 HIM1 (high inducti | 92.09 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 92.02 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 92.02 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 92.01 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 92.01 | |
| PF10087 | 97 | DUF2325: Uncharacterized protein conserved in bact | 91.99 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 91.94 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 91.81 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 91.61 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 91.56 | |
| PLN02775 | 286 | Probable dihydrodipicolinate reductase | 91.45 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 91.41 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 91.31 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 91.29 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 91.22 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 91.06 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 90.9 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 90.74 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 90.71 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 90.61 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 90.48 | |
| TIGR01161 | 352 | purK phosphoribosylaminoimidazole carboxylase, Pur | 90.43 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.43 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 90.33 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.17 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 90.13 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 89.99 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 89.89 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 89.78 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 89.76 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 89.67 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 89.62 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 89.58 | |
| PLN03096 | 395 | glyceraldehyde-3-phosphate dehydrogenase A; Provis | 89.58 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 89.5 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 89.48 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 89.48 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 89.38 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 89.35 |
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=375.92 Aligned_cols=299 Identities=21% Similarity=0.243 Sum_probs=253.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--CCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~~D 86 (520)
|+||||||+||||||.+..|++.| ++|+++|.-.+ +.. +.+.....+++++|++|.+.+.++|+ .+|
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G-~~vvV~DNL~~-----g~~-----~~v~~~~~~f~~gDi~D~~~L~~vf~~~~id 69 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTG-HEVVVLDNLSN-----GHK-----IALLKLQFKFYEGDLLDRALLTAVFEENKID 69 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCC-----CCH-----HHhhhccCceEEeccccHHHHHHHHHhcCCC
Confidence 689999999999999999999999 69999988542 221 11111116899999999999999997 599
Q ss_pred EEEEcccC---CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHH
Q 010005 87 TVFYVDAT---DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (520)
Q Consensus 87 ~Vih~aa~---~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~s 163 (520)
+|||+||. ..+..+|..+|+.|+.||.+|+++|+++||++|||.||+.|||.... .|++|+. |..|.++||.|
T Consensus 70 aViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~--~PI~E~~--~~~p~NPYG~s 145 (329)
T COG1087 70 AVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTT--SPISETS--PLAPINPYGRS 145 (329)
T ss_pred EEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCC--cccCCCC--CCCCCCcchhH
Confidence 99999998 67789999999999999999999999999999999999999976544 6999998 66799999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEecCccccCCCC-----------CchHHHHHHhcCCCc-eEEec------CCCcccccc
Q 010005 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-----------QLVPLLVNLAKPGWT-KFIIG------SGENMSDFT 225 (520)
Q Consensus 164 K~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~-----------~~~~~l~~~~~~g~~-~~i~g------~g~~~~~~i 225 (520)
|.+.|++++.+.+.+++++++||..++.|.... .++|.+++.+...++ +.++| ||+..||||
T Consensus 146 Klm~E~iL~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~thLip~~~q~A~G~r~~l~ifG~DY~T~DGT~iRDYI 225 (329)
T COG1087 146 KLMSEEILRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYI 225 (329)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEecccccCCCCCccCCCCCCcchHHHHHHHHHhcCCceeEEeCCCCCCCCCCeeeeee
Confidence 999999999999999999999999999995322 478888887775555 67777 588899999
Q ss_pred cHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhccc
Q 010005 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLR 305 (520)
Q Consensus 226 ~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~ 305 (520)
||.|+|+|++.+++.+.. ....++||++++.-+|++|+++.+.++.|.+.+....| ++
T Consensus 226 HV~DLA~aH~~Al~~L~~---~g~~~~~NLG~G~G~SV~evi~a~~~vtg~~ip~~~~~-------------------RR 283 (329)
T COG1087 226 HVDDLADAHVLALKYLKE---GGSNNIFNLGSGNGFSVLEVIEAAKKVTGRDIPVEIAP-------------------RR 283 (329)
T ss_pred ehhHHHHHHHHHHHHHHh---CCceeEEEccCCCceeHHHHHHHHHHHhCCcCceeeCC-------------------CC
Confidence 999999999999998753 22236999999999999999999999999876543333 33
Q ss_pred ccCCCCchHHHHHHhccceEechHHHHHhcCCCCCC-CHHHHHHHHHHHHHh
Q 010005 306 TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVV-SLEEGVSSTIQSFSH 356 (520)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~-sleegi~~~~~~~~~ 356 (520)
.++++ ..+.|.+|++++|||+|+. ++++.++++..|.+.
T Consensus 284 ~GDpa------------~l~Ad~~kA~~~Lgw~p~~~~L~~ii~~aw~W~~~ 323 (329)
T COG1087 284 AGDPA------------ILVADSSKARQILGWQPTYDDLEDIIKDAWDWHQQ 323 (329)
T ss_pred CCCCc------------eeEeCHHHHHHHhCCCcccCCHHHHHHHHHHHhhh
Confidence 33443 5778999999999999999 999999999999985
|
|
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-49 Score=392.46 Aligned_cols=345 Identities=40% Similarity=0.587 Sum_probs=310.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcC-CcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELG-KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g-~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
++.+|+||||+||+|+||+++|++++ ..+|+++|..+.....+.+.. .....+++++.+|++|..++.++++++
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~-----~~~~~~v~~~~~D~~~~~~i~~a~~~~ 77 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELT-----GFRSGRVTVILGDLLDANSISNAFQGA 77 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhh-----cccCCceeEEecchhhhhhhhhhccCc
Confidence 46799999999999999999999998 568999887653111121110 013568999999999999999999999
Q ss_pred CEEEEcccC---CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHH
Q 010005 86 STVFYVDAT---DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (520)
Q Consensus 86 D~Vih~aa~---~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~ 162 (520)
.|+|+|+. .....+++..+++|+.||.|++++|++.||+|+||+||..|++.+.. ....+|+.|+|.++.++|+.
T Consensus 78 -~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~Vvf~g~~-~~n~~E~~p~p~~~~d~Y~~ 155 (361)
T KOG1430|consen 78 -VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAYVVFGGEP-IINGDESLPYPLKHIDPYGE 155 (361)
T ss_pred -eEEEeccccCccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCceEEeCCee-cccCCCCCCCccccccccch
Confidence 88888887 33445699999999999999999999999999999999999987766 56789999999888899999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhh
Q 010005 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242 (520)
Q Consensus 163 sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~ 242 (520)
||+.+|+++++.++..++.+|+|||+.||||++...++.+...++.|..+...++++.+.||+|+++++.|++++.+++.
T Consensus 156 sKa~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~~~~~~i~~~~~~g~~~f~~g~~~~~~~~~~~~Nva~ahilA~~aL~ 235 (361)
T KOG1430|consen 156 SKALAEKLVLEANGSDDLYTCALRPPGIYGPGDKRLLPKIVEALKNGGFLFKIGDGENLNDFTYGENVAWAHILAARALL 235 (361)
T ss_pred HHHHHHHHHHHhcCCCCeeEEEEccccccCCCCccccHHHHHHHHccCceEEeeccccccceEEechhHHHHHHHHHHHH
Confidence 99999999999998788999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCC-cccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhc
Q 010005 243 SRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP-FIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLAS 321 (520)
Q Consensus 243 ~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~-~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (520)
...+...|++|+|++++++..+++...+.+.+|++.+ .+.+|.++..+++.+.++....+++ ..|.+++.+++...
T Consensus 236 ~~~~~~~Gq~yfI~d~~p~~~~~~~~~l~~~lg~~~~~~~~~p~~l~~~~~~l~e~~~~~l~p---~~p~lt~~~v~~~~ 312 (361)
T KOG1430|consen 236 DKSPSVNGQFYFITDDTPVRFFDFLSPLVKALGYCLPSSIKLPLFLSYFLAYLLEIVYFLLRP---YQPILTRFRVALLG 312 (361)
T ss_pred hcCCccCceEEEEeCCCcchhhHHHHHHHHhcCCCCCceeecchHHHHHHHHHHHHHHHhccC---CCCCcChhheeeec
Confidence 7778999999999999999999999999999999998 8999999999999999999999887 56889999999999
Q ss_pred cceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhcc
Q 010005 322 RTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDS 361 (520)
Q Consensus 322 ~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~~ 361 (520)
.+.++|+.||+++|||+|..+++|++.+++.|+.+.....
T Consensus 313 ~~~~f~~~kA~~~lgY~P~~~~~e~~~~~~~~~~~~~~~~ 352 (361)
T KOG1430|consen 313 VTRTFSIEKAKRELGYKPLVSLEEAIQRTIHWVASESDSA 352 (361)
T ss_pred cccccCHHHHHHhhCCCCcCCHHHHHHHHHHHHhhhhhcc
Confidence 8999999999999999999999999999999998876653
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-49 Score=372.93 Aligned_cols=312 Identities=22% Similarity=0.234 Sum_probs=265.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--CC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GA 85 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~~ 85 (520)
|++|||||+||||++.++.++++.. ++|+.+|.- +=......+......++..++++|++|.+.+.++++ ++
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkL-----TYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~ 75 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKL-----TYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQP 75 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecc-----cccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCC
Confidence 6899999999999999999999854 458888763 222222344445566799999999999999999998 59
Q ss_pred CEEEEcccC---CCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEeecccccccCCCCCCCCCCCccCCCCCCChHH
Q 010005 86 STVFYVDAT---DLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (520)
Q Consensus 86 D~Vih~aa~---~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~ 161 (520)
|+|+|+||- +.+..+|+...+.|+.||.+|+||+++...+ ||+++||..|||+-..+....+|++ |.+|.+||+
T Consensus 76 D~VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~t--p~~PsSPYS 153 (340)
T COG1088 76 DAVVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETT--PYNPSSPYS 153 (340)
T ss_pred CeEEEechhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccCC--CCCCCCCcc
Confidence 999999998 6777899999999999999999999999854 9999999999998766555678888 669999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC--CchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHH
Q 010005 162 DLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 162 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~ 239 (520)
.||+.+..+++.+.+.+|++++|.|+++-|||.+- .++|..+..+..|+++++.|+|.+.|||+||+|-++|+..+++
T Consensus 154 ASKAasD~lVray~~TYglp~~ItrcSNNYGPyqfpEKlIP~~I~nal~g~~lpvYGdG~~iRDWl~VeDh~~ai~~Vl~ 233 (340)
T COG1088 154 ASKAASDLLVRAYVRTYGLPATITRCSNNYGPYQFPEKLIPLMIINALLGKPLPVYGDGLQIRDWLYVEDHCRAIDLVLT 233 (340)
T ss_pred hhhhhHHHHHHHHHHHcCCceEEecCCCCcCCCcCchhhhHHHHHHHHcCCCCceecCCcceeeeEEeHhHHHHHHHHHh
Confidence 99999999999999999999999999999999985 6899999999999999999999999999999999999999998
Q ss_pred hhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHH
Q 010005 240 ALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQL 319 (520)
Q Consensus 240 ~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (520)
.+..|++|||++++..+-.|+++.|.+.+|+..+... .+.+... +.| +.
T Consensus 234 ------kg~~GE~YNIgg~~E~~Nlevv~~i~~~l~~~~~~~~----------~li~~V~--------DRp----GH--- 282 (340)
T COG1088 234 ------KGKIGETYNIGGGNERTNLEVVKTICELLGKDKPDYR----------DLITFVE--------DRP----GH--- 282 (340)
T ss_pred ------cCcCCceEEeCCCccchHHHHHHHHHHHhCccccchh----------hheEecc--------CCC----CC---
Confidence 6777999999999999999999999999998765200 0000001 111 00
Q ss_pred hccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 320 ASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 320 ~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
...+-+|.+|++++|||+|++++|+||++|++||.++..
T Consensus 283 -D~RYaid~~Ki~~eLgW~P~~~fe~GlrkTv~WY~~N~~ 321 (340)
T COG1088 283 -DRRYAIDASKIKRELGWRPQETFETGLRKTVDWYLDNEW 321 (340)
T ss_pred -ccceeechHHHhhhcCCCcCCCHHHHHHHHHHHHHhchH
Confidence 013556999999999999999999999999999998654
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-47 Score=387.50 Aligned_cols=315 Identities=19% Similarity=0.177 Sum_probs=246.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCC---CCCCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD---SLSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~---~~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
+++|+||||||+||||++|+++|+++| ++|+++|+.... .......... .....+++++.+|++|.+++.+++
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g-~~V~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~ 88 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLN-QTVIGLDNFSTG---YQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKAC 88 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCCCc---chhhhhhhhhccccccCCceEEEEccCCCHHHHHHHh
Confidence 356899999999999999999999999 699998764310 0000000000 011235789999999999999999
Q ss_pred cCCCEEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCCh
Q 010005 83 EGASTVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDL 159 (520)
Q Consensus 83 ~~~D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~ 159 (520)
+++|+|||+|+.. .+..++...+++|+.||.|++++|++.+++||||+||+++||.... .+..|++ +..|.++
T Consensus 89 ~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg~~~~--~~~~e~~--~~~p~~~ 164 (348)
T PRK15181 89 KNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGDHPD--LPKIEER--IGRPLSP 164 (348)
T ss_pred hCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhCCCCC--CCCCCCC--CCCCCCh
Confidence 9999999999972 3445677899999999999999999999999999999999985432 3455655 4578899
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC------CchHHHHHHhcCCCceEEecCCCcccccccHHHHHHH
Q 010005 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHA 233 (520)
Q Consensus 160 Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~------~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~a 233 (520)
|+.+|.++|+++..+..++|++++++||+++|||+++ .+++.++..+..|+++.++++|++.+||+|++|+|++
T Consensus 165 Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~g~~~rd~i~v~D~a~a 244 (348)
T PRK15181 165 YAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDGSTSRDFCYIENVIQA 244 (348)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCCCCccccCHHHHHHHHHcCCCcEEeCCCCceEeeEEHHHHHHH
Confidence 9999999999999988778999999999999999763 3678888888888888899999999999999999999
Q ss_pred HHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcc--cCChHHHHHHHHHHHHHHHHhcccccCCCC
Q 010005 234 HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFI--KLPTGVVWYIILLVKWIHEKLGLRTYNHSL 311 (520)
Q Consensus 234 i~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (520)
++.++... .....+++|||+++++++++|+++.+.+.++...... ..+ ...+
T Consensus 245 ~~~~~~~~---~~~~~~~~yni~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~-----------------------~~~~ 298 (348)
T PRK15181 245 NLLSATTN---DLASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEP-----------------------IYKD 298 (348)
T ss_pred HHHHHhcc---cccCCCCEEEecCCCcEeHHHHHHHHHHHhCcccccccCCCc-----------------------ccCC
Confidence 98877620 1123578999999999999999999999987432100 000 0000
Q ss_pred chHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhh
Q 010005 312 SACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (520)
Q Consensus 312 ~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~ 358 (520)
..+... ....+|.+|++++|||+|+++++|+++++++||+.+.
T Consensus 299 ~~~~~~----~~~~~d~~k~~~~lGw~P~~sl~egl~~~~~w~~~~~ 341 (348)
T PRK15181 299 FRDGDV----KHSQADITKIKTFLSYEPEFDIKEGLKQTLKWYIDKH 341 (348)
T ss_pred CCCCcc----cccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhc
Confidence 011111 1356799999999999999999999999999998753
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=357.94 Aligned_cols=265 Identities=45% Similarity=0.665 Sum_probs=226.8
Q ss_pred EEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCEEEE
Q 010005 12 VVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTVFY 90 (520)
Q Consensus 12 LVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~Vih 90 (520)
|||||+||||+||+++|+++|+ ++|+++|+.. ..............+++++|++|++++.++++|+|+|||
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~--------~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H 72 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSP--------PPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFH 72 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEccccc--------ccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEE
Confidence 6999999999999999999994 5899966543 211111111122334999999999999999999999999
Q ss_pred cccCC-C-CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCC--CCCCCCCCCccCCCCCCChHHHHHHH
Q 010005 91 VDATD-L-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGS--HDIHNGDETLTCCWKFQDLMCDLKAQ 166 (520)
Q Consensus 91 ~aa~~-~-~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~--~~~~~~~E~~~~~~~p~~~Y~~sK~~ 166 (520)
+|+.. . ...+++.++++|+.||+||+++|++++|+||||+||++|+++.. ......+|+.|++..+.+.|+.||+.
T Consensus 73 ~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~vv~~~~~~~~~~~~dE~~~~~~~~~~~Y~~SK~~ 152 (280)
T PF01073_consen 73 TAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISVVFDNYKGDPIINGDEDTPYPSSPLDPYAESKAL 152 (280)
T ss_pred eCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcceeEeccCCCCcccCCcCCcccccccCchHHHHHH
Confidence 99983 2 23567889999999999999999999999999999999998732 23335688888888899999999999
Q ss_pred HHHHHHHhcC---CC--CceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhh
Q 010005 167 AEALVLFANN---ID--GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEAL 241 (520)
Q Consensus 167 ~E~~~~~~~~---~~--gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~ 241 (520)
+|+++.++.+ +. .+.+++|||+.||||++..+.+.+.+.++.|......|+++...+++||+|+|+|++++++++
T Consensus 153 AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~~~~~~~~~~~~g~~~~~~g~~~~~~~~vyV~NvA~ahvlA~~~L 232 (280)
T PF01073_consen 153 AEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQRLVPRLVKMVRSGLFLFQIGDGNNLFDFVYVENVAHAHVLAAQAL 232 (280)
T ss_pred HHHHHHhhcccccccccceeEEEEeccEEeCcccccccchhhHHHHhcccceeecCCCceECcEeHHHHHHHHHHHHHHh
Confidence 9999999876 33 499999999999999999999999999999877788999999999999999999999999988
Q ss_pred hcc--cccCCCceEEEeCCCCcC-HHHHHHHHHHHcCCCCCc-ccCC
Q 010005 242 DSR--MVSVAGMAFFITNLEPIK-FWDFLSIILEGLGYQRPF-IKLP 284 (520)
Q Consensus 242 ~~~--~~~~~g~~yni~~~~~~t-~~el~~~i~~~~g~~~~~-v~~p 284 (520)
... .....|++|+|++++|++ ++||...+.+.+|++.+. +++|
T Consensus 233 ~~~~~~~~~~G~~y~itd~~p~~~~~~f~~~~~~~~G~~~~~~~~lp 279 (280)
T PF01073_consen 233 LEPGKPERVAGQAYFITDGEPVPSFWDFMRPLWEALGYPPPKSISLP 279 (280)
T ss_pred ccccccccCCCcEEEEECCCccCcHHHHHHHHHHHCCCCCCcccCCC
Confidence 765 567899999999999999 999999999999999887 7776
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=363.59 Aligned_cols=320 Identities=23% Similarity=0.231 Sum_probs=245.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC--C
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--A 85 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~--~ 85 (520)
||+||||||+||||+++++.|+++|+..|.+.|+... ......+.......+++++.+|++|.+++.+++++ +
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 75 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTY-----AGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQP 75 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCcc-----ccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCC
Confidence 3799999999999999999999999534555443210 00000111111123578899999999999999984 8
Q ss_pred CEEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHH---------CCCCEEEEeecccccccCCCCCCCCCCCccCC
Q 010005 86 STVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRE---------CKVRRLVYNSTADVVFDGSHDIHNGDETLTCC 153 (520)
Q Consensus 86 D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~---------~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~ 153 (520)
|+|||+||.. .+..++..++++|+.|+.+++++|++ .++++|||+||.++||.......+.+|+. +
T Consensus 76 D~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~~--~ 153 (355)
T PRK10217 76 DCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETT--P 153 (355)
T ss_pred CEEEECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCCC--C
Confidence 9999999972 23346788999999999999999987 35789999999999986543334678876 5
Q ss_pred CCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC--CchHHHHHHhcCCCceEEecCCCcccccccHHHHH
Q 010005 154 WKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVA 231 (520)
Q Consensus 154 ~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva 231 (520)
..|.+.|+.||..+|.++..++++++++++++||+++|||++. .+++.++..+..++++.++++|++.++|+||+|++
T Consensus 154 ~~p~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~D~a 233 (355)
T PRK10217 154 YAPSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVYGNGQQIRDWLYVEDHA 233 (355)
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCcccHHHHHHHHHhcCCCceEeCCCCeeeCcCcHHHHH
Confidence 5788999999999999999998888999999999999999973 56777877778888878889999999999999999
Q ss_pred HHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCC
Q 010005 232 HAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSL 311 (520)
Q Consensus 232 ~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (520)
+++..+++ ....+++||++++++++++|+++.+.+.+|...+..+.+..... ..+ .... ..+.
T Consensus 234 ~a~~~~~~------~~~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~-~~~~----~~~~ 296 (355)
T PRK10217 234 RALYCVAT------TGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAHYR------DLI-TFVA----DRPG 296 (355)
T ss_pred HHHHHHHh------cCCCCCeEEeCCCCcccHHHHHHHHHHHhccccccccccccccc------ccc-eecC----CCCC
Confidence 99999988 23457899999999999999999999999864332222110000 000 0000 0010
Q ss_pred chHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 312 SACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 312 ~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
. ...+.+|++|++++|||+|+++++|+++++++||+++..
T Consensus 297 ~--------~~~~~~d~~k~~~~lg~~p~~~l~e~l~~~~~~~~~~~~ 336 (355)
T PRK10217 297 H--------DLRYAIDASKIARELGWLPQETFESGMRKTVQWYLANES 336 (355)
T ss_pred C--------CcccccCHHHHHHhcCCCCcCcHHHHHHHHHHHHHhCHH
Confidence 0 013467999999999999999999999999999988744
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=359.87 Aligned_cols=318 Identities=16% Similarity=0.188 Sum_probs=241.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhc-CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCC-CHHHHHHHHcCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVR-DISQIKKVLEGA 85 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~-g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~-d~~~l~~~l~~~ 85 (520)
||+||||||+||||++|+++|+++ | ++|+++|+.. .. ........+++++.+|++ |.+.+.++++++
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~-~~V~~~~r~~--------~~--~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 69 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTD-WEVYGMDMQT--------DR--LGDLVNHPRMHFFEGDITINKEWIEYHVKKC 69 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCC-CeEEEEeCcH--------HH--HHHhccCCCeEEEeCCCCCCHHHHHHHHcCC
Confidence 378999999999999999999987 6 5999965421 10 111112346899999998 777888899999
Q ss_pred CEEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCcc-C----CCCCC
Q 010005 86 STVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLT-C----CWKFQ 157 (520)
Q Consensus 86 D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~-~----~~~p~ 157 (520)
|+|||+|+.. ....++...+++|+.++.+++++|++.+ +||||+||+.+||.... .+.+|+.+ . ..+|.
T Consensus 70 d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~-~~~v~~SS~~vyg~~~~--~~~~ee~~~~~~~~~~~p~ 146 (347)
T PRK11908 70 DVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSEVYGMCPD--EEFDPEASPLVYGPINKPR 146 (347)
T ss_pred CEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC-CeEEEEecceeeccCCC--cCcCccccccccCcCCCcc
Confidence 9999999972 2356788899999999999999999998 79999999999986532 24555432 1 12567
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC----------CchHHHHHHhcCCCceEEecCCCcccccccH
Q 010005 158 DLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT----------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (520)
Q Consensus 158 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~----------~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v 227 (520)
+.|+.+|..+|++++.++.+++++++++||+++|||+.. .+++.++..+..|+++.+.++|++.++|+|+
T Consensus 147 ~~Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~r~~i~v 226 (347)
T PRK11908 147 WIYACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGEPISLVDGGSQKRAFTDI 226 (347)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHHHhCCCceEEecCCceeeccccH
Confidence 799999999999999998878999999999999999742 3577888888888888888899999999999
Q ss_pred HHHHHHHHHHHHhhhccccc--CCCceEEEeCC-CCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcc
Q 010005 228 ENVAHAHVCAAEALDSRMVS--VAGMAFFITNL-EPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGL 304 (520)
Q Consensus 228 ~Dva~ai~~~~~~~~~~~~~--~~g~~yni~~~-~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~ 304 (520)
+|++++++.+++. +. ..+++||++++ +.+|++|+++.+.+.+|..+.....+.++ .+.......
T Consensus 227 ~D~a~a~~~~~~~-----~~~~~~g~~yni~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~--- 293 (347)
T PRK11908 227 DDGIDALMKIIEN-----KDGVASGKIYNIGNPKNNHSVRELANKMLELAAEYPEYAESAKKV-----KLVETTSGA--- 293 (347)
T ss_pred HHHHHHHHHHHhC-----ccccCCCCeEEeCCCCCCcCHHHHHHHHHHHhcCccccccccccc-----ccccCCchh---
Confidence 9999999999882 22 45789999997 47999999999999998643221100000 000000000
Q ss_pred cccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhc
Q 010005 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (520)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~ 360 (520)
....... ....+..|++|++++|||+|+++++|+++++++|+++....
T Consensus 294 ------~~~~~~~--~~~~~~~d~~k~~~~lGw~p~~~l~~~l~~~~~~~~~~~~~ 341 (347)
T PRK11908 294 ------YYGKGYQ--DVQNRVPKIDNTMQELGWAPKTTMDDALRRIFEAYRGHVAE 341 (347)
T ss_pred ------ccCcCcc--hhccccCChHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 0000000 00134468999999999999999999999999999876543
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-43 Score=362.98 Aligned_cols=319 Identities=18% Similarity=0.167 Sum_probs=237.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
-+.|+||||||+||||++|++.|+++|.++|+++|+.... ..+.. ........++++++.+|++|.+.+.++++++
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~-~~~l~---~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~ 87 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDK-IKHLL---EPDTVPWSGRIQFHRINIKHDSRLEGLIKMA 87 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchh-hhhhh---ccccccCCCCeEEEEcCCCChHHHHHHhhcC
Confidence 3568999999999999999999999842599996643210 00000 0000011246899999999999999999999
Q ss_pred CEEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccC----------
Q 010005 86 STVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC---------- 152 (520)
Q Consensus 86 D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~---------- 152 (520)
|+|||+|+.. ....++...+..|+.++.+++++|++.+ +||||+||.++||..... ..+|+.|.
T Consensus 88 d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~-~r~v~~SS~~vYg~~~~~--~~~e~~p~~~~~~~~~~~ 164 (386)
T PLN02427 88 DLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN-KRLIHFSTCEVYGKTIGS--FLPKDHPLRQDPAFYVLK 164 (386)
T ss_pred CEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC-CEEEEEeeeeeeCCCcCC--CCCccccccccccccccc
Confidence 9999999972 2234556677899999999999999988 899999999999854221 12222211
Q ss_pred ----------CCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC-------------CchHHHHHHhcCC
Q 010005 153 ----------CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-------------QLVPLLVNLAKPG 209 (520)
Q Consensus 153 ----------~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~-------------~~~~~l~~~~~~g 209 (520)
...|.+.|+.+|..+|+++..+++++|++++++||++||||++. .+++.+...+..+
T Consensus 165 e~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 244 (386)
T PLN02427 165 EDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRR 244 (386)
T ss_pred ccccccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCccccccccccccchHHHHHHHHHhcC
Confidence 01345789999999999999998888999999999999999752 2345566677788
Q ss_pred CceEEecCCCcccccccHHHHHHHHHHHHHhhhcccc-cCCCceEEEeCC-CCcCHHHHHHHHHHHcCCCCCc-------
Q 010005 210 WTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMV-SVAGMAFFITNL-EPIKFWDFLSIILEGLGYQRPF------- 280 (520)
Q Consensus 210 ~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~-~~~g~~yni~~~-~~~t~~el~~~i~~~~g~~~~~------- 280 (520)
+++.++++|++.++|+||+|+|++++.+++ .+ ...+++||++++ ++++++|+++.+.+.+|.....
T Consensus 245 ~~~~~~g~g~~~r~~i~V~Dva~ai~~al~-----~~~~~~g~~yni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~ 319 (386)
T PLN02427 245 EPLKLVDGGQSQRTFVYIKDAIEAVLLMIE-----NPARANGHIFNVGNPNNEVTVRQLAEMMTEVYAKVSGEPALEEPT 319 (386)
T ss_pred CCeEEECCCCceECcEeHHHHHHHHHHHHh-----CcccccCceEEeCCCCCCccHHHHHHHHHHHhccccccccccccc
Confidence 888889999999999999999999999988 22 245789999997 5999999999999999852110
Q ss_pred ccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhc
Q 010005 281 IKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (520)
Q Consensus 281 v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~ 360 (520)
+.+|. .+....... .......|.+|++++|||+|+++++++|+++++|+++....
T Consensus 320 ~~~~~-----------------------~~~~~~~~~--~~~~~~~d~~k~~~~lGw~p~~~l~~gl~~~~~~~~~~~~~ 374 (386)
T PLN02427 320 VDVSS-----------------------KEFYGEGYD--DSDKRIPDMTIINKQLGWNPKTSLWDLLESTLTYQHKTYAE 374 (386)
T ss_pred cccCc-----------------------ccccCcccc--chhhccCCHHHHHHhcCCCcCccHHHHHHHHHHHHHHHHHH
Confidence 11110 000000000 00134569999999999999999999999999999887665
Q ss_pred c
Q 010005 361 S 361 (520)
Q Consensus 361 ~ 361 (520)
.
T Consensus 375 ~ 375 (386)
T PLN02427 375 A 375 (386)
T ss_pred H
Confidence 3
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-43 Score=365.41 Aligned_cols=303 Identities=21% Similarity=0.212 Sum_probs=241.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
.+.||||||||+||||++|++.|+++| ++|+++|+... .+.. ........++++++.+|+.+.. +.++
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G-~~V~~ldr~~~---~~~~---~~~~~~~~~~~~~~~~Di~~~~-----~~~~ 185 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRG-DEVIVIDNFFT---GRKE---NLVHLFGNPRFELIRHDVVEPI-----LLEV 185 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCCC---ccHh---HhhhhccCCceEEEECcccccc-----ccCC
Confidence 356899999999999999999999999 59999776421 1111 1111112346788999997653 4689
Q ss_pred CEEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCcc---CCCCCCCh
Q 010005 86 STVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLT---CCWKFQDL 159 (520)
Q Consensus 86 D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~---~~~~p~~~ 159 (520)
|+|||+|+.. ....++...++.|+.||.+++++|++.++ ||||+||.+|||+... .+.+|+.+ .|..|.+.
T Consensus 186 D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~-r~V~~SS~~VYg~~~~--~p~~E~~~~~~~p~~p~s~ 262 (436)
T PLN02166 186 DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLE--HPQKETYWGNVNPIGERSC 262 (436)
T ss_pred CEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECcHHHhCCCCC--CCCCccccccCCCCCCCCc
Confidence 9999999862 23457888999999999999999999986 8999999999985432 35666532 25567889
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC----CchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHH
Q 010005 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT----QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHV 235 (520)
Q Consensus 160 Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~----~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~ 235 (520)
|+.+|..+|++++.++++++++++++||+++|||++. .+++.++..+..++++.++++|++.++|+||+|+++++.
T Consensus 263 Yg~SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~~~~~~~i~~~i~~~l~~~~i~v~g~g~~~rdfi~V~Dva~ai~ 342 (436)
T PLN02166 263 YDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQTIRKQPMTVYGDGKQTRSFQYVSDLVDGLV 342 (436)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCCCCccchHHHHHHHHhcCCCcEEeCCCCeEEeeEEHHHHHHHHH
Confidence 9999999999999998888999999999999999853 567888888888888888999999999999999999999
Q ss_pred HHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHH
Q 010005 236 CAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACY 315 (520)
Q Consensus 236 ~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (520)
.+++ .. .+++|||++++++|++|+++.+.+.+|.+......|. .+ .
T Consensus 343 ~~~~------~~-~~giyNIgs~~~~Si~ela~~I~~~~g~~~~i~~~p~-----------------------~~----~ 388 (436)
T PLN02166 343 ALME------GE-HVGPFNLGNPGEFTMLELAEVVKETIDSSATIEFKPN-----------------------TA----D 388 (436)
T ss_pred HHHh------cC-CCceEEeCCCCcEeHHHHHHHHHHHhCCCCCeeeCCC-----------------------CC----C
Confidence 8887 22 3469999999999999999999999987643222120 00 0
Q ss_pred HHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhcc
Q 010005 316 IVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDS 361 (520)
Q Consensus 316 ~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~~ 361 (520)
. .....+|++|++++|||+|+++++|+++++++||++.....
T Consensus 389 ~----~~~~~~d~~Ka~~~LGw~P~~sl~egl~~~i~~~~~~~~~~ 430 (436)
T PLN02166 389 D----PHKRKPDISKAKELLNWEPKISLREGLPLMVSDFRNRILNE 430 (436)
T ss_pred C----ccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHhcCc
Confidence 0 01346799999999999999999999999999998876543
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=327.01 Aligned_cols=302 Identities=21% Similarity=0.235 Sum_probs=251.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
..+||+||||.|||||||++.|..+|| +|+++|... ..| +.++......+..+.+.-|+..+ ++.++|
T Consensus 26 ~~lrI~itGgaGFIgSHLvdkLm~egh-~VIa~Dn~f---tg~---k~n~~~~~~~~~fel~~hdv~~p-----l~~evD 93 (350)
T KOG1429|consen 26 QNLRILITGGAGFIGSHLVDKLMTEGH-EVIALDNYF---TGR---KENLEHWIGHPNFELIRHDVVEP-----LLKEVD 93 (350)
T ss_pred CCcEEEEecCcchHHHHHHHHHHhcCC-eEEEEeccc---ccc---hhhcchhccCcceeEEEeechhH-----HHHHhh
Confidence 468999999999999999999999995 999999764 222 23455555667888888888654 777899
Q ss_pred EEEEcccC---CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCcc---CCCCCCChH
Q 010005 87 TVFYVDAT---DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLT---CCWKFQDLM 160 (520)
Q Consensus 87 ~Vih~aa~---~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~---~~~~p~~~Y 160 (520)
.|+|+|++ .....+|..++..|+.|+.|++-.|++.+ +||+++||+.|||+ +...|..|+-+ .|..|.+.|
T Consensus 94 ~IyhLAapasp~~y~~npvktIktN~igtln~lglakrv~-aR~l~aSTseVYgd--p~~hpq~e~ywg~vnpigpr~cy 170 (350)
T KOG1429|consen 94 QIYHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARFLLASTSEVYGD--PLVHPQVETYWGNVNPIGPRSCY 170 (350)
T ss_pred hhhhhccCCCCcccccCccceeeecchhhHHHHHHHHHhC-ceEEEeecccccCC--cccCCCccccccccCcCCchhhh
Confidence 99999998 44567889999999999999999999999 69999999999976 33445555443 367888999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEecCccccCCC----CCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHH
Q 010005 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGD----TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236 (520)
Q Consensus 161 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~----~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ 236 (520)
...|..+|.++..|+++.|+.+.|.|+.+.|||+. ..++..|..++.+++++.++|+|.+.|+|.||+|+++++++
T Consensus 171 degKr~aE~L~~~y~k~~giE~rIaRifNtyGPrm~~~dgrvvsnf~~q~lr~epltv~g~G~qtRSF~yvsD~Vegll~ 250 (350)
T KOG1429|consen 171 DEGKRVAETLCYAYHKQEGIEVRIARIFNTYGPRMHMDDGRVVSNFIAQALRGEPLTVYGDGKQTRSFQYVSDLVEGLLR 250 (350)
T ss_pred hHHHHHHHHHHHHhhcccCcEEEEEeeecccCCccccCCChhhHHHHHHHhcCCCeEEEcCCcceEEEEeHHHHHHHHHH
Confidence 99999999999999999999999999999999975 36888999999999999999999999999999999999999
Q ss_pred HHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHH
Q 010005 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYI 316 (520)
Q Consensus 237 ~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (520)
+++ ....+.+||++++.+|+.|+++++.+..+-.......+. +. +.|
T Consensus 251 Lm~-------s~~~~pvNiGnp~e~Tm~elAemv~~~~~~~s~i~~~~~-----------------~~---Ddp------ 297 (350)
T KOG1429|consen 251 LME-------SDYRGPVNIGNPGEFTMLELAEMVKELIGPVSEIEFVEN-----------------GP---DDP------ 297 (350)
T ss_pred Hhc-------CCCcCCcccCCccceeHHHHHHHHHHHcCCCcceeecCC-----------------CC---CCc------
Confidence 998 223346999999999999999999999965433322210 00 111
Q ss_pred HHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhcc
Q 010005 317 VQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDS 361 (520)
Q Consensus 317 ~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~~ 361 (520)
+.+.-|++++++.|||.|+++|+||++.++.|+++.....
T Consensus 298 -----~kR~pDit~ake~LgW~Pkv~L~egL~~t~~~fr~~i~~~ 337 (350)
T KOG1429|consen 298 -----RKRKPDITKAKEQLGWEPKVSLREGLPLTVTYFRERIARE 337 (350)
T ss_pred -----cccCccHHHHHHHhCCCCCCcHHHhhHHHHHHHHHHHHHH
Confidence 1345699999999999999999999999999999876653
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=356.50 Aligned_cols=304 Identities=18% Similarity=0.157 Sum_probs=241.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
++.|+||||||+||||+++++.|.++| ++|+++|+.. .. .... .....+++.+|++|.+.+.++++++
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G-~~V~~v~r~~--------~~-~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~ 86 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEG-HYIIASDWKK--------NE-HMSE--DMFCHEFHLVDLRVMENCLKVTKGV 86 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCC-CEEEEEEecc--------cc-cccc--ccccceEEECCCCCHHHHHHHHhCC
Confidence 356899999999999999999999999 5999966432 10 0000 0113578899999999999999999
Q ss_pred CEEEEcccCCC----CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCC--CCCCCCCccCCCCCCCh
Q 010005 86 STVFYVDATDL----NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHD--IHNGDETLTCCWKFQDL 159 (520)
Q Consensus 86 D~Vih~aa~~~----~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~--~~~~~E~~~~~~~p~~~ 159 (520)
|+|||+|+... ...++......|+.++.|++++|++.++++|||+||..+||..... ..+.+|+.+.+..|.+.
T Consensus 87 D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS~~vYg~~~~~~~~~~~~E~~~~p~~p~s~ 166 (370)
T PLN02695 87 DHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDA 166 (370)
T ss_pred CEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCchhhcCCccccCcCCCcCcccCCCCCCCCH
Confidence 99999998621 2234566778999999999999999999999999999999865321 12456655446788999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC------CchHHHHHHhc-CCCceEEecCCCcccccccHHHHHH
Q 010005 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAK-PGWTKFIIGSGENMSDFTYVENVAH 232 (520)
Q Consensus 160 Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~------~~~~~l~~~~~-~g~~~~i~g~g~~~~~~i~v~Dva~ 232 (520)
|+.+|..+|++++.++.+.|++++++||+++|||+.. .+.+.++..+. .+.++.++++|++.++|+|++|+++
T Consensus 167 Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~r~~i~v~D~a~ 246 (370)
T PLN02695 167 YGLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMWGDGKQTRSFTFIDECVE 246 (370)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCCCccccccccHHHHHHHHHcCCCCeEEeCCCCeEEeEEeHHHHHH
Confidence 9999999999999998878999999999999999753 23556666544 4567788999999999999999999
Q ss_pred HHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCc
Q 010005 233 AHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLS 312 (520)
Q Consensus 233 ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (520)
++..+++ . ..+++||++++++++++|+++.+.+..|.+.+....|.. ...
T Consensus 247 ai~~~~~------~-~~~~~~nv~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~-----------------------~~~ 296 (370)
T PLN02695 247 GVLRLTK------S-DFREPVNIGSDEMVSMNEMAEIALSFENKKLPIKHIPGP-----------------------EGV 296 (370)
T ss_pred HHHHHHh------c-cCCCceEecCCCceeHHHHHHHHHHHhCCCCCceecCCC-----------------------CCc
Confidence 9998876 2 235799999999999999999999999875443333210 000
Q ss_pred hHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhc
Q 010005 313 ACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (520)
Q Consensus 313 ~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~ 360 (520)
.....|++|+++.|||+|+++++|+|+++++|+++....
T Consensus 297 ---------~~~~~d~sk~~~~lgw~p~~~l~e~i~~~~~~~~~~~~~ 335 (370)
T PLN02695 297 ---------RGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKEQIEK 335 (370)
T ss_pred ---------cccccCHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 023469999999999999999999999999999987654
|
|
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=329.83 Aligned_cols=312 Identities=22% Similarity=0.254 Sum_probs=258.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhc-CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--C
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~-g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~ 84 (520)
.++++||||+||||++.+..+... ..++.+.+|--. ...+ ...+.+....++..++++|+.|...+..+++ .
T Consensus 6 ~~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~---~~s~--~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~ 80 (331)
T KOG0747|consen 6 EKNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLD---YCSN--LKNLEPVRNSPNYKFVEGDIADADLVLYLFETEE 80 (331)
T ss_pred cceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecc---cccc--cchhhhhccCCCceEeeccccchHHHHhhhccCc
Confidence 489999999999999999999987 234566666533 2222 3355555667899999999999998888885 5
Q ss_pred CCEEEEcccC---CCCCcchhhHHhhhHHHHHHHHHHHHHCC-CCEEEEeecccccccCCCCCCCCCCCccCCCCCCChH
Q 010005 85 ASTVFYVDAT---DLNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLM 160 (520)
Q Consensus 85 ~D~Vih~aa~---~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-vkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y 160 (520)
.|.|+|+|+. ..+..++......|+.+|..|+++++..| +++|||+||..|||+......+ +|.. .+.|.++|
T Consensus 81 id~vihfaa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~-~E~s--~~nPtnpy 157 (331)
T KOG0747|consen 81 IDTVIHFAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVV-GEAS--LLNPTNPY 157 (331)
T ss_pred hhhhhhhHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCccccccc-cccc--cCCCCCch
Confidence 8999999998 55667888999999999999999999995 9999999999999987654322 2555 77999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC--CchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHH
Q 010005 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238 (520)
Q Consensus 161 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~ 238 (520)
+.+|+++|..++.|...+|++++++|.++||||++. .++|.|+..+..+++.++.|+|.+.++|+||+|+++|+..++
T Consensus 158 AasKaAaE~~v~Sy~~sy~lpvv~~R~nnVYGP~q~~~klipkFi~l~~~~~~~~i~g~g~~~rs~l~veD~~ea~~~v~ 237 (331)
T KOG0747|consen 158 AASKAAAEMLVRSYGRSYGLPVVTTRMNNVYGPNQYPEKLIPKFIKLAMRGKEYPIHGDGLQTRSYLYVEDVSEAFKAVL 237 (331)
T ss_pred HHHHHHHHHHHHHHhhccCCcEEEEeccCccCCCcChHHHhHHHHHHHHhCCCcceecCcccceeeEeHHHHHHHHHHHH
Confidence 999999999999999999999999999999999986 589999998888999999999999999999999999999999
Q ss_pred HhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHH
Q 010005 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQ 318 (520)
Q Consensus 239 ~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (520)
+ ++..|++|||+++.+++.-|+++.+.+.+++..+....+.+.. ... +.| ...
T Consensus 238 ~------Kg~~geIYNIgtd~e~~~~~l~k~i~eli~~~~~~~~~~p~~~------------~v~----dRp-~nd---- 290 (331)
T KOG0747|consen 238 E------KGELGEIYNIGTDDEMRVIDLAKDICELFEKRLPNIDTEPFIF------------FVE----DRP-YND---- 290 (331)
T ss_pred h------cCCccceeeccCcchhhHHHHHHHHHHHHHHhccCCCCCCcce------------ecC----CCC-ccc----
Confidence 8 4677999999999999999999999999887655443332210 000 111 111
Q ss_pred HhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhh
Q 010005 319 LASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (520)
Q Consensus 319 ~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~ 358 (520)
..+.+|.+|++ .|||+|++++++|++.+++||.++.
T Consensus 291 ---~Ry~~~~eKik-~LGw~~~~p~~eGLrktie~y~~~~ 326 (331)
T KOG0747|consen 291 ---LRYFLDDEKIK-KLGWRPTTPWEEGLRKTIEWYTKNF 326 (331)
T ss_pred ---ccccccHHHHH-hcCCcccCcHHHHHHHHHHHHHhhh
Confidence 12567999999 5999999999999999999999865
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=363.62 Aligned_cols=314 Identities=15% Similarity=0.136 Sum_probs=237.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC----CCCC------C------CCCCCCcEEEE
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN----SLLP------D------SLSSGRAEYHQ 69 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~----~~l~------~------~~~~~~v~~~~ 69 (520)
.++|+||||||+||||++|+++|+++| ++|+++|+... +.... ..+. + .....+++++.
T Consensus 45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G-~~V~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~ 119 (442)
T PLN02572 45 SKKKKVMVIGGDGYCGWATALHLSKRG-YEVAIVDNLCR----RLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYV 119 (442)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEecccc----ccccccccccccccccchHHHHHHHHHhhCCcceEEE
Confidence 467899999999999999999999999 59999885321 11000 0000 0 00123688999
Q ss_pred ecCCCHHHHHHHHc--CCCEEEEcccCCC---CCc---chhhHHhhhHHHHHHHHHHHHHCCCC-EEEEeecccccccCC
Q 010005 70 VDVRDISQIKKVLE--GASTVFYVDATDL---NTD---DFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTADVVFDGS 140 (520)
Q Consensus 70 ~Dl~d~~~l~~~l~--~~D~Vih~aa~~~---~~~---~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~SS~~vyg~~~ 140 (520)
+|++|.+.+.++++ ++|+|||+|+... +.. ++...+++|+.|+.|++++|++.+++ ||||+||..+||...
T Consensus 120 ~Dl~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~ 199 (442)
T PLN02572 120 GDICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPN 199 (442)
T ss_pred CCCCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCC
Confidence 99999999999998 4899999997621 112 23456789999999999999999985 999999999998532
Q ss_pred CC--CCCCC------CCc-cCCCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC---------------
Q 010005 141 HD--IHNGD------ETL-TCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--------------- 196 (520)
Q Consensus 141 ~~--~~~~~------E~~-~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~--------------- 196 (520)
.. ...++ |++ +.+..|.++|+.||.++|.+++.+++.+|++++++||+++|||+++
T Consensus 200 ~~~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~~~~~~ 279 (442)
T PLN02572 200 IDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETMMDEELINRLDYD 279 (442)
T ss_pred CCCcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCcccccccccccccCcc
Confidence 11 00111 222 2366788999999999999999999889999999999999999853
Q ss_pred ----CchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCC--ceEEEeCCCCcCHHHHHHHH
Q 010005 197 ----QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAG--MAFFITNLEPIKFWDFLSII 270 (520)
Q Consensus 197 ----~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g--~~yni~~~~~~t~~el~~~i 270 (520)
.+++.++..+..|+++.++|+|++.+||+||+|+|++++.+++. ....| ++||+++ +.+++.|+++.+
T Consensus 280 ~~~~~~i~~~~~~~~~g~~i~v~g~G~~~Rdfi~V~Dva~a~~~al~~-----~~~~g~~~i~Nigs-~~~si~el~~~i 353 (442)
T PLN02572 280 GVFGTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTVRCIEIAIAN-----PAKPGEFRVFNQFT-EQFSVNELAKLV 353 (442)
T ss_pred cchhhHHHHHHHHHhcCCCceecCCCCEEECeEEHHHHHHHHHHHHhC-----hhhcCceeEEEeCC-CceeHHHHHHHH
Confidence 24556677777888888899999999999999999999999872 22233 5899987 689999999999
Q ss_pred HHH---cCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccceEechHHHHHhcCCCCCC---CHH
Q 010005 271 LEG---LGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVV---SLE 344 (520)
Q Consensus 271 ~~~---~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~---sle 344 (520)
.+. +|.+.+....|.. ... ........|.+|+++ |||+|++ +++
T Consensus 354 ~~~~~~~g~~~~~~~~p~~-------------------------~~~----~~~~~~~~d~~k~~~-LGw~p~~~~~~l~ 403 (442)
T PLN02572 354 TKAGEKLGLDVEVISVPNP-------------------------RVE----AEEHYYNAKHTKLCE-LGLEPHLLSDSLL 403 (442)
T ss_pred HHHHHhhCCCCCeeeCCCC-------------------------ccc----ccccccCccHHHHHH-cCCCCCCcHHHHH
Confidence 999 8765432222210 000 001134568999976 9999998 899
Q ss_pred HHHHHHHHHHHhhhhc
Q 010005 345 EGVSSTIQSFSHLARD 360 (520)
Q Consensus 345 egi~~~~~~~~~~~~~ 360 (520)
|++.++++||+++...
T Consensus 404 ~~l~~~~~~~~~~~~~ 419 (442)
T PLN02572 404 DSLLNFAVKYKDRVDT 419 (442)
T ss_pred HHHHHHHHHHHhhcch
Confidence 9999999999965543
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=362.42 Aligned_cols=301 Identities=21% Similarity=0.205 Sum_probs=238.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
+.||||||||+||||++|+++|+++| ++|+++|+.. ..+.. .........+++++.+|+.++. +.++|
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G-~~V~~ld~~~---~~~~~---~~~~~~~~~~~~~i~~D~~~~~-----l~~~D 185 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARG-DSVIVVDNFF---TGRKE---NVMHHFSNPNFELIRHDVVEPI-----LLEVD 185 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCc-CEEEEEeCCC---ccchh---hhhhhccCCceEEEECCccChh-----hcCCC
Confidence 56899999999999999999999999 5999977532 11111 1111223356888999997753 46899
Q ss_pred EEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCcc---CCCCCCChH
Q 010005 87 TVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLT---CCWKFQDLM 160 (520)
Q Consensus 87 ~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~---~~~~p~~~Y 160 (520)
+|||+|+.. ....++...+++|+.++.|++++|++.++ ||||+||..+||.... .+.+|+.+ .|..+.+.|
T Consensus 186 ~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~-r~V~~SS~~VYg~~~~--~p~~E~~~~~~~P~~~~s~Y 262 (442)
T PLN02206 186 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQ--HPQVETYWGNVNPIGVRSCY 262 (442)
T ss_pred EEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECChHHhCCCCC--CCCCccccccCCCCCccchH
Confidence 999999862 23457889999999999999999999996 8999999999975432 35566532 244567899
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEecCccccCCC----CCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHH
Q 010005 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGD----TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236 (520)
Q Consensus 161 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~----~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ 236 (520)
+.+|..+|+++..++++++++++++||+++|||+. ..+++.++..+..++++.++++|++.++|+||+|+|++++.
T Consensus 263 ~~SK~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~~~~~~~v~~~i~~~l~~~~i~i~g~G~~~rdfi~V~Dva~ai~~ 342 (442)
T PLN02206 263 DEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMR 342 (442)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCccccchHHHHHHHHHcCCCcEEeCCCCEEEeEEeHHHHHHHHHH
Confidence 99999999999999887899999999999999974 35677888888888888899999999999999999999998
Q ss_pred HHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHH
Q 010005 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYI 316 (520)
Q Consensus 237 ~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (520)
+++ .. .+++|||+++++++++|+++.+.+.+|.+......|.. + ..
T Consensus 343 a~e------~~-~~g~yNIgs~~~~sl~Elae~i~~~~g~~~~i~~~p~~-----------------------~-~~--- 388 (442)
T PLN02206 343 LME------GE-HVGPFNLGNPGEFTMLELAKVVQETIDPNAKIEFRPNT-----------------------E-DD--- 388 (442)
T ss_pred HHh------cC-CCceEEEcCCCceeHHHHHHHHHHHhCCCCceeeCCCC-----------------------C-CC---
Confidence 887 22 34599999999999999999999999865332222210 0 00
Q ss_pred HHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhc
Q 010005 317 VQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (520)
Q Consensus 317 ~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~ 360 (520)
.....+|++|++++|||+|+++++|+|+++++||++....
T Consensus 389 ----~~~~~~d~sKa~~~LGw~P~~~l~egl~~~~~~~~~~~~~ 428 (442)
T PLN02206 389 ----PHKRKPDITKAKELLGWEPKVSLRQGLPLMVKDFRQRVFG 428 (442)
T ss_pred ----ccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhhhc
Confidence 0134579999999999999999999999999999876543
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=351.71 Aligned_cols=314 Identities=22% Similarity=0.228 Sum_probs=242.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--CCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~~D 86 (520)
||||||||+||||++++++|+++|+..|+++|+... .+... .........+++++.+|++|.+++.++++ ++|
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 75 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTY---AGNLE--SLADVSDSERYVFEHADICDRAELDRIFAQHQPD 75 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCc---cchHH--HHHhcccCCceEEEEecCCCHHHHHHHHHhcCCC
Confidence 589999999999999999999999645776554210 00000 11111112357889999999999999997 489
Q ss_pred EEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHC---------CCCEEEEeecccccccCCCC--------CCCC
Q 010005 87 TVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACREC---------KVRRLVYNSTADVVFDGSHD--------IHNG 146 (520)
Q Consensus 87 ~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~---------gvkr~V~~SS~~vyg~~~~~--------~~~~ 146 (520)
+|||+|+.. ....+++.++++|+.|+.+++++|++. ++++|||+||.++||..... ..+.
T Consensus 76 ~vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~ 155 (352)
T PRK10084 76 AVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLF 155 (352)
T ss_pred EEEECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCc
Confidence 999999972 233567889999999999999999874 46799999999999853211 1235
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC--CchHHHHHHhcCCCceEEecCCCccccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (520)
+|+. +..|.+.|+.||..+|++++.+++++|++++++|++++|||++. .+++.++..+..++++.++++|++.++|
T Consensus 156 ~E~~--~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 233 (352)
T PRK10084 156 TETT--AYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDW 233 (352)
T ss_pred cccC--CCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcCccchHHHHHHHHhcCCCeEEeCCCCeEEee
Confidence 6766 55788999999999999999998878999999999999999863 5677777778888887888999999999
Q ss_pred ccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcc
Q 010005 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGL 304 (520)
Q Consensus 225 i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~ 304 (520)
+|++|+|+++..+++ ....+++||++++++++++|+++.+++.+|...+. ..|.. ..+....
T Consensus 234 v~v~D~a~a~~~~l~------~~~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~p~-~~~~~---------~~~~~~~-- 295 (352)
T PRK10084 234 LYVEDHARALYKVVT------EGKAGETYNIGGHNEKKNLDVVLTICDLLDEIVPK-ATSYR---------EQITYVA-- 295 (352)
T ss_pred EEHHHHHHHHHHHHh------cCCCCceEEeCCCCcCcHHHHHHHHHHHhcccccc-ccchh---------hhccccc--
Confidence 999999999998887 23457899999999999999999999999864321 11110 0000000
Q ss_pred cccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhh
Q 010005 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (520)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~ 358 (520)
..+. ....+.+|++|++++|||+|+++++|+|+++++||+++.
T Consensus 296 ---~~~~--------~~~~~~~d~~k~~~~lg~~p~~~l~~~l~~~~~~~~~~~ 338 (352)
T PRK10084 296 ---DRPG--------HDRRYAIDASKISRELGWKPQETFESGIRKTVEWYLANT 338 (352)
T ss_pred ---cCCC--------CCceeeeCHHHHHHHcCCCCcCCHHHHHHHHHHHHHhCH
Confidence 0010 011456899999999999999999999999999999864
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=378.83 Aligned_cols=322 Identities=17% Similarity=0.170 Sum_probs=246.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhc-CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHH-HHHHHc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ-IKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~-g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~-l~~~l~ 83 (520)
.++|+||||||+||||++|+++|+++ | ++|+++|+.. .. ........+++++.+|++|.++ +.++++
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g-~~V~~l~r~~--------~~--~~~~~~~~~~~~~~gDl~d~~~~l~~~l~ 381 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDN-YEVYGLDIGS--------DA--ISRFLGHPRFHFVEGDISIHSEWIEYHIK 381 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCC-cEEEEEeCCc--------hh--hhhhcCCCceEEEeccccCcHHHHHHHhc
Confidence 45789999999999999999999986 6 6999966432 10 0111123468899999998654 577889
Q ss_pred CCCEEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccC----CC-C
Q 010005 84 GASTVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC----CW-K 155 (520)
Q Consensus 84 ~~D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~----~~-~ 155 (520)
++|+|||+||.. ....++...+++|+.++.+++++|++.+ +||||+||.++||.... .+.+|+.+. +. .
T Consensus 382 ~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~~~V~~SS~~vyg~~~~--~~~~E~~~~~~~~p~~~ 458 (660)
T PRK08125 382 KCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-KRIIFPSTSEVYGMCTD--KYFDEDTSNLIVGPINK 458 (660)
T ss_pred CCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-CeEEEEcchhhcCCCCC--CCcCccccccccCCCCC
Confidence 999999999972 2345677889999999999999999998 79999999999985432 357777642 22 3
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC----------CchHHHHHHhcCCCceEEecCCCcccccc
Q 010005 156 FQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT----------QLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (520)
Q Consensus 156 p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~----------~~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (520)
|.+.|+.||.++|+++..+++++|++++++||+++|||++. .+++.++..+..++++.++++|++.++|+
T Consensus 459 p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~~g~g~~~rd~i 538 (660)
T PRK08125 459 QRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLVDGGKQKRCFT 538 (660)
T ss_pred CccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCCccccccccccccchHHHHHHHhcCCCCeEEeCCCceeecee
Confidence 56789999999999999998888999999999999999753 35778888888888888889999999999
Q ss_pred cHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC-CcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcc
Q 010005 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE-PIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGL 304 (520)
Q Consensus 226 ~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~-~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~ 304 (520)
|++|+|++++.+++.. .....|++||+++++ .++++|+++.+.+.+|.+...+.+|....... .+.. ...+.
T Consensus 539 ~v~Dva~a~~~~l~~~---~~~~~g~iyni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~---~~~~-~~~~~ 611 (660)
T PRK08125 539 DIRDGIEALFRIIENK---DNRCDGQIINIGNPDNEASIRELAEMLLASFEKHPLRDHFPPFAGFRV---VESS-SYYGK 611 (660)
T ss_pred eHHHHHHHHHHHHhcc---ccccCCeEEEcCCCCCceeHHHHHHHHHHHhccCcccccCCccccccc---cccc-ccccc
Confidence 9999999999998821 012357899999985 79999999999999986543334432110000 0000 00000
Q ss_pred cccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhc
Q 010005 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (520)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~ 360 (520)
. ... .....+|++|++++|||+|+++++|+|+++++||++..+-
T Consensus 612 ----~----~~~----~~~~~~d~~ka~~~LGw~P~~~lee~l~~~i~~~~~~~~~ 655 (660)
T PRK08125 612 ----G----YQD----VEHRKPSIRNARRLLDWEPKIDMQETIDETLDFFLRTVDL 655 (660)
T ss_pred ----c----ccc----ccccCCChHHHHHHhCCCCCCcHHHHHHHHHHHHHhcccc
Confidence 0 000 0134569999999999999999999999999999976543
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=347.22 Aligned_cols=317 Identities=15% Similarity=0.111 Sum_probs=234.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCC---CCCCCCcEEEEecCCCHHHHHHHHcC-
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD---SLSSGRAEYHQVDVRDISQIKKVLEG- 84 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~---~~~~~~v~~~~~Dl~d~~~l~~~l~~- 84 (520)
|+||||||+||||++++++|+++| ++|+++|+.... ... .....+.. .....+++++.+|++|.+++.+++++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~ 77 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKG-YEVHGLIRRSSS-FNT-QRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEI 77 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCC-CEEEEEecCCcc-cch-hhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhC
Confidence 589999999999999999999999 599996654210 000 00000000 00124688999999999999999985
Q ss_pred -CCEEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCCCC---EEEEeecccccccCCCCCCCCCCCccCCCCCC
Q 010005 85 -ASTVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVR---RLVYNSTADVVFDGSHDIHNGDETLTCCWKFQ 157 (520)
Q Consensus 85 -~D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk---r~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~ 157 (520)
+|+|||+|+.. .+..++....++|+.||.+++++|++.+++ ||||+||.++||... ..+.+|+. +..|.
T Consensus 78 ~~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~--~~~~~E~~--~~~p~ 153 (343)
T TIGR01472 78 KPTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQ--EIPQNETT--PFYPR 153 (343)
T ss_pred CCCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCC--CCCCCCCC--CCCCC
Confidence 69999999972 233456778889999999999999998864 899999999998543 23577877 55789
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC-----CchHHHHHHhcCCCc-eEEecCCCcccccccHHHHH
Q 010005 158 DLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-----QLVPLLVNLAKPGWT-KFIIGSGENMSDFTYVENVA 231 (520)
Q Consensus 158 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~-----~~~~~l~~~~~~g~~-~~i~g~g~~~~~~i~v~Dva 231 (520)
++|+.||..+|.+++.+++++|+++++.|+.++|||+.. ..+..++..+..|++ ..++|+|++.+||+||+|+|
T Consensus 154 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~V~D~a 233 (343)
T TIGR01472 154 SPYAAAKLYAHWITVNYREAYGLFAVNGILFNHESPRRGENFVTRKITRAAAKIKLGLQEKLYLGNLDAKRDWGHAKDYV 233 (343)
T ss_pred ChhHHHHHHHHHHHHHHHHHhCCceEEEeecccCCCCCCccccchHHHHHHHHHHcCCCCceeeCCCccccCceeHHHHH
Confidence 999999999999999998888999999999999999743 223445555666653 45679999999999999999
Q ss_pred HHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCccc-------CChHHHHHHHHHHHHHHHHhcc
Q 010005 232 HAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIK-------LPTGVVWYIILLVKWIHEKLGL 304 (520)
Q Consensus 232 ~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~-------~p~~~~~~~~~~~~~~~~~~~~ 304 (520)
++++.+++. . .+++|||++++++|++|+++.+.+.+|.+..... .|..... . ...
T Consensus 234 ~a~~~~~~~-----~--~~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~-------~---~~~- 295 (343)
T TIGR01472 234 EAMWLMLQQ-----D--KPDDYVIATGETHSVREFVEVSFEYIGKTLNWKDKGINEVGRCKETGK-------V---HVE- 295 (343)
T ss_pred HHHHHHHhc-----C--CCccEEecCCCceeHHHHHHHHHHHcCCCcccccccccccccccccCc-------e---eEE-
Confidence 999998872 2 2358999999999999999999999986532100 0000000 0 000
Q ss_pred cccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Q 010005 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSH 356 (520)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~ 356 (520)
....+..+... .....|++|++++|||+|+++++|||++++++|++
T Consensus 296 --~~~~~~~~~~~----~~~~~d~~k~~~~lgw~p~~~l~egi~~~~~~~~~ 341 (343)
T TIGR01472 296 --IDPRYFRPTEV----DLLLGDATKAKEKLGWKPEVSFEKLVKEMVEEDLE 341 (343)
T ss_pred --eCccccCCCcc----chhcCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHh
Confidence 00000111111 12356999999999999999999999999999985
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=344.07 Aligned_cols=307 Identities=17% Similarity=0.151 Sum_probs=238.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC-----CCCCCcEEEEecCCCHHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS-----LSSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~-----~~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
++|+||||||+||||++++++|+++| ++|+++++.... . . ...+... ....+++++.+|++|.+++.++
T Consensus 5 ~~~~vlVTGatGfiG~~l~~~L~~~G-~~V~~~~r~~~~-~--~--~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 78 (340)
T PLN02653 5 PRKVALITGITGQDGSYLTEFLLSKG-YEVHGIIRRSSN-F--N--TQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRW 78 (340)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCC-CEEEEEeccccc-c--c--ccchhhhccccccccCceEEEEecCCCHHHHHHH
Confidence 56899999999999999999999999 699996543210 0 0 0011111 0123578999999999999999
Q ss_pred HcC--CCEEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCCCC-----EEEEeecccccccCCCCCCCCCCCcc
Q 010005 82 LEG--ASTVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVR-----RLVYNSTADVVFDGSHDIHNGDETLT 151 (520)
Q Consensus 82 l~~--~D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-----r~V~~SS~~vyg~~~~~~~~~~E~~~ 151 (520)
+++ +|+|||+|+.. ....++...+++|+.|+.+++++|++.+++ +|||+||+++||.... +.+|+.
T Consensus 79 ~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~---~~~E~~- 154 (340)
T PLN02653 79 LDDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPP---PQSETT- 154 (340)
T ss_pred HHHcCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCC---CCCCCC-
Confidence 984 79999999972 233566778899999999999999999875 8999999999986442 677877
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC-Cc----hHHHHHHhcCCCceE-EecCCCcccccc
Q 010005 152 CCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-QL----VPLLVNLAKPGWTKF-IIGSGENMSDFT 225 (520)
Q Consensus 152 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~-~~----~~~l~~~~~~g~~~~-i~g~g~~~~~~i 225 (520)
+..|.+.|+.||..+|.+++.++++++++++..|+.++|||+.. .. +..++..+..++++. ..|+|++.+||+
T Consensus 155 -~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i 233 (340)
T PLN02653 155 -PFHPRSPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQKKLFLGNLDASRDWG 233 (340)
T ss_pred -CCCCCChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCcccchhHHHHHHHHHHcCCCCceEeCCCcceecce
Confidence 56789999999999999999998888999999999999999653 22 333445566776544 458999999999
Q ss_pred cHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCC-cccCChHHHHHHHHHHHHHHHHhcc
Q 010005 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP-FIKLPTGVVWYIILLVKWIHEKLGL 304 (520)
Q Consensus 226 ~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~-~v~~p~~~~~~~~~~~~~~~~~~~~ 304 (520)
|++|+|++++.+++ . . .++.||++++++++++|+++.+.+.+|.+.. .+.+.
T Consensus 234 ~v~D~a~a~~~~~~-----~-~-~~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~-------------------- 286 (340)
T PLN02653 234 FAGDYVEAMWLMLQ-----Q-E-KPDDYVVATEESHTVEEFLEEAFGYVGLNWKDHVEID-------------------- 286 (340)
T ss_pred eHHHHHHHHHHHHh-----c-C-CCCcEEecCCCceeHHHHHHHHHHHcCCCCCcceeeC--------------------
Confidence 99999999999998 2 2 2468999999999999999999999986421 11111
Q ss_pred cccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
..+..+... ....+|++|++++|||+|+++++|||+++++||++...
T Consensus 287 ----~~~~~~~~~----~~~~~d~~k~~~~lgw~p~~~l~~gi~~~~~~~~~~~~ 333 (340)
T PLN02653 287 ----PRYFRPAEV----DNLKGDASKAREVLGWKPKVGFEQLVKMMVDEDLELAK 333 (340)
T ss_pred ----cccCCcccc----ccccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 001111111 13456999999999999999999999999999997544
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=340.57 Aligned_cols=311 Identities=22% Similarity=0.201 Sum_probs=240.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC-CCCCcEEEEecCCCHHHHHHHHcC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL-SSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~-~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
++|+||||||+||||+++++.|+++| ++|+++|+.. ... ...... ...+++++.+|++|.+++.+++++
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELG-AEVYGYSLDP--------PTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAE 73 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCC-CEEEEEeCCC--------ccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhh
Confidence 46899999999999999999999999 5999865432 110 000000 123577899999999999999985
Q ss_pred --CCEEEEcccC---CCCCcchhhHHhhhHHHHHHHHHHHHHCC-CCEEEEeecccccccCCCCCCCCCCCccCCCCCCC
Q 010005 85 --ASTVFYVDAT---DLNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQD 158 (520)
Q Consensus 85 --~D~Vih~aa~---~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-vkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~ 158 (520)
+|+|||+|+. ..+..++...+++|+.++.+++++|++.+ ++++||+||..+||.... ..+.+|+. +..|.+
T Consensus 74 ~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~-~~~~~e~~--~~~p~~ 150 (349)
T TIGR02622 74 FKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEW-VWGYRETD--PLGGHD 150 (349)
T ss_pred cCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCC-CCCCccCC--CCCCCC
Confidence 6999999996 23445778899999999999999999887 889999999999975422 23567766 457889
Q ss_pred hHHHHHHHHHHHHHHhcCCC-------CceEEEEecCccccCCC---CCchHHHHHHhcCCCceEEecCCCcccccccHH
Q 010005 159 LMCDLKAQAEALVLFANNID-------GLLTCALRPSNVFGPGD---TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVE 228 (520)
Q Consensus 159 ~Y~~sK~~~E~~~~~~~~~~-------gi~~~ilRp~~vyGp~~---~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~ 228 (520)
+|+.+|..+|.+++.+++++ +++++++||+++|||++ ..+++.++..+..|+++. .++|++.++|+|++
T Consensus 151 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~-~~~g~~~rd~i~v~ 229 (349)
T TIGR02622 151 PYSSSKACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWAEDRLIPDVIRAFSSNKIVI-IRNPDATRPWQHVL 229 (349)
T ss_pred cchhHHHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcchhhhhhHHHHHHHhcCCCeE-ECCCCcccceeeHH
Confidence 99999999999998876543 89999999999999975 256888888888888754 57889999999999
Q ss_pred HHHHHHHHHHHhhhcccccCCCceEEEeCC--CCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccc
Q 010005 229 NVAHAHVCAAEALDSRMVSVAGMAFFITNL--EPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRT 306 (520)
Q Consensus 229 Dva~ai~~~~~~~~~~~~~~~g~~yni~~~--~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~ 306 (520)
|+|++++.+++.+... +...+++|||+++ +++++.|+++.+.+.++.....+..+.
T Consensus 230 D~a~a~~~~~~~~~~~-~~~~~~~yni~s~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~--------------------- 287 (349)
T TIGR02622 230 EPLSGYLLLAEKLFTG-QAEFAGAWNFGPRASDNARVVELVVDALEFWWGDDAEWEDDS--------------------- 287 (349)
T ss_pred HHHHHHHHHHHHHhhc-CccccceeeeCCCcccCcCHHHHHHHHHHHhcCCCCceeecc---------------------
Confidence 9999999888743211 1233579999974 789999999999988764322111110
Q ss_pred cCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 307 YNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
.+..+.. ......|++|++++|||+|+++++++|+++++|+++...
T Consensus 288 ---~~~~~~~----~~~~~~d~~k~~~~lgw~p~~~l~~gi~~~i~w~~~~~~ 333 (349)
T TIGR02622 288 ---DLNHPHE----ARLLKLDSSKARTLLGWHPRWGLEEAVSRTVDWYKAWLR 333 (349)
T ss_pred ---CCCCCcc----cceeecCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 0000110 013567999999999999999999999999999987644
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=368.13 Aligned_cols=310 Identities=22% Similarity=0.269 Sum_probs=244.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHH--c
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL--E 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l--~ 83 (520)
++|+||||||+||||++++++|+++|+ ++|+++|+... ......+......++++++.+|++|.+.+.+++ .
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~-----~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 79 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDY-----CSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITE 79 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCc-----cchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhc
Confidence 468999999999999999999999841 58998765310 000001111112347899999999998888776 5
Q ss_pred CCCEEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCC-CCEEEEeecccccccCCCCC-CCCCCCccCCCCCCC
Q 010005 84 GASTVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDI-HNGDETLTCCWKFQD 158 (520)
Q Consensus 84 ~~D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-vkr~V~~SS~~vyg~~~~~~-~~~~E~~~~~~~p~~ 158 (520)
++|+|||+|+.. .+..++..++++|+.+|.+++++|++.+ ++||||+||..+||...... .+.+|+. +..|.+
T Consensus 80 ~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~~--~~~p~~ 157 (668)
T PLN02260 80 GIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEAS--QLLPTN 157 (668)
T ss_pred CCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCccccC--CCCCCC
Confidence 799999999983 2234567889999999999999999998 89999999999998654321 1235555 456889
Q ss_pred hHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC--CchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHH
Q 010005 159 LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236 (520)
Q Consensus 159 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ 236 (520)
+|+.+|..+|++++.++++++++++++||+++|||++. .+++.++..+..|+++.++++|++.++|+|++|+|+++..
T Consensus 158 ~Y~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~~~~~i~~~~~~a~~g~~i~i~g~g~~~r~~ihV~Dva~a~~~ 237 (668)
T PLN02260 158 PYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEV 237 (668)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCEEEECcccccCcCCCcccHHHHHHHHHhCCCCeEEecCCCceEeeEEHHHHHHHHHH
Confidence 99999999999999998878999999999999999874 5678888888888888899999999999999999999998
Q ss_pred HHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHH
Q 010005 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYI 316 (520)
Q Consensus 237 ~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (520)
+++ ....+++||+++++++++.|+++.+.+.+|.+.... +.. . ...++.
T Consensus 238 ~l~------~~~~~~vyni~~~~~~s~~el~~~i~~~~g~~~~~~-i~~----------------~-----~~~p~~--- 286 (668)
T PLN02260 238 VLH------KGEVGHVYNIGTKKERRVIDVAKDICKLFGLDPEKS-IKF----------------V-----ENRPFN--- 286 (668)
T ss_pred HHh------cCCCCCEEEECCCCeeEHHHHHHHHHHHhCCCCcce-eee----------------c-----CCCCCC---
Confidence 887 344578999999999999999999999999753210 100 0 001111
Q ss_pred HHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 317 VQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 317 ~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
...+.+|++|+++ |||+|+++++|+++++++||+++..
T Consensus 287 ----~~~~~~d~~k~~~-lGw~p~~~~~egl~~~i~w~~~~~~ 324 (668)
T PLN02260 287 ----DQRYFLDDQKLKK-LGWQERTSWEEGLKKTMEWYTSNPD 324 (668)
T ss_pred ----cceeecCHHHHHH-cCCCCCCCHHHHHHHHHHHHHhChh
Confidence 1235679999975 9999999999999999999998755
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=329.30 Aligned_cols=320 Identities=24% Similarity=0.287 Sum_probs=255.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCEE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~V 88 (520)
|+|+||||+||||+++++.|+++| ++|+++++ ++... ......+++.+.+|+.|.+++.++++++|+|
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g-~~V~~~~r--------~~~~~---~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~v 68 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQG-EEVRVLVR--------PTSDR---RNLEGLDVEIVEGDLRDPASLRKAVAGCRAL 68 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCC-CEEEEEEe--------cCccc---cccccCCceEEEeeCCCHHHHHHHHhCCCEE
Confidence 589999999999999999999999 59999554 32211 1112236889999999999999999999999
Q ss_pred EEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCC-CCCChHHHHHHH
Q 010005 89 FYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCW-KFQDLMCDLKAQ 166 (520)
Q Consensus 89 ih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~-~p~~~Y~~sK~~ 166 (520)
||+|+. .....++...+++|+.++.+++++|++.+++|+|++||.++||.... ..+.+|+.+... .+.+.|+.+|..
T Consensus 69 i~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~~~e~~~~~~~~~~~~Y~~sK~~ 147 (328)
T TIGR03466 69 FHVAADYRLWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYTSSVATLGVRGD-GTPADETTPSSLDDMIGHYKRSKFL 147 (328)
T ss_pred EEeceecccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEechhhcCcCCC-CCCcCccCCCCcccccChHHHHHHH
Confidence 999986 33345678899999999999999999999999999999999975322 235677764322 235689999999
Q ss_pred HHHHHHHhcCCCCceEEEEecCccccCCCCCc--hHHH-HHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhc
Q 010005 167 AEALVLFANNIDGLLTCALRPSNVFGPGDTQL--VPLL-VNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (520)
Q Consensus 167 ~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~--~~~l-~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~ 243 (520)
+|++++.++.+++++++++||+++|||++... ...+ ...+..+.+ ... +...+|+|++|+|+++..+++
T Consensus 148 ~e~~~~~~~~~~~~~~~ilR~~~~~G~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~i~v~D~a~a~~~~~~---- 219 (328)
T TIGR03466 148 AEQAALEMAAEKGLPVVIVNPSTPIGPRDIKPTPTGRIIVDFLNGKMP-AYV---DTGLNLVHVDDVAEGHLLALE---- 219 (328)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCCCCCCCcHHHHHHHHHcCCCc-eee---CCCcceEEHHHHHHHHHHHHh----
Confidence 99999999887899999999999999986522 2223 333333332 222 234689999999999999988
Q ss_pred ccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccc
Q 010005 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRT 323 (520)
Q Consensus 244 ~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (520)
....++.|+++ +++++++|+++.+.+.+|.+.+.+.+|.+.....+.+.+++.+..+ ..+.++....+....+
T Consensus 220 --~~~~~~~~~~~-~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 292 (328)
T TIGR03466 220 --RGRIGERYILG-GENLTLKQILDKLAEITGRPAPRVKLPRWLLLPVAWGAEALARLTG----KEPRVTVDGVRMAKKK 292 (328)
T ss_pred --CCCCCceEEec-CCCcCHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHhcc
Confidence 23457788886 5889999999999999999888889999998888888887777655 2344555666666667
Q ss_pred eEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhh
Q 010005 324 RTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (520)
Q Consensus 324 ~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~ 357 (520)
..+|++|+++.|||+|+ +++|+++++++||+++
T Consensus 293 ~~~d~~k~~~~lg~~p~-~~~~~i~~~~~~~~~~ 325 (328)
T TIGR03466 293 MFFSSAKAVRELGYRQR-PAREALRDAVEWFRAN 325 (328)
T ss_pred CCCChHHHHHHcCCCCc-CHHHHHHHHHHHHHHh
Confidence 88999999999999996 9999999999999874
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=337.68 Aligned_cols=299 Identities=23% Similarity=0.264 Sum_probs=225.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC---CCCCC-CCCCcEEEEecCCCHHHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL---LPDSL-SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~---l~~~~-~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
++|+||||||+||||++++++|+++| ++|++++ |+..... +.... ...+++++.+|++|.+++.+++
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~--------r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 79 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERG-YTVKGTV--------RNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAI 79 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEe--------CCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHH
Confidence 56899999999999999999999999 5999944 4322100 00000 1135788999999999999999
Q ss_pred cCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecc-cccccCCCC-CCCCCCCccC----CCCC
Q 010005 83 EGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA-DVVFDGSHD-IHNGDETLTC----CWKF 156 (520)
Q Consensus 83 ~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~-~vyg~~~~~-~~~~~E~~~~----~~~p 156 (520)
+++|+|||+|+.. ..++...+++|+.|+.+++++|++.+++||||+||. ++||..... ..+.+|+++. +..|
T Consensus 80 ~~~d~Vih~A~~~--~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p 157 (342)
T PLN02214 80 DGCDGVFHTASPV--TDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNT 157 (342)
T ss_pred hcCCEEEEecCCC--CCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccceeeeccCCCCCCcccCcccCCChhhcccc
Confidence 9999999999974 246788999999999999999999999999999996 588743321 1246777532 3457
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCC----chHHHHHHhcCCCceEEecCCCcccccccHHHHHH
Q 010005 157 QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ----LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAH 232 (520)
Q Consensus 157 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~----~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ 232 (520)
.++|+.||..+|+++..+++++|++++++||++||||++.. .+..++.. ..|+.. .. +++.++|+||+|+|+
T Consensus 158 ~~~Y~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~~~~~~~~~~~~~-~~g~~~-~~--~~~~~~~i~V~Dva~ 233 (342)
T PLN02214 158 KNWYCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPTINASLYHVLKY-LTGSAK-TY--ANLTQAYVDVRDVAL 233 (342)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHH-HcCCcc-cC--CCCCcCeeEHHHHHH
Confidence 78999999999999999988889999999999999998652 22333333 344432 22 356789999999999
Q ss_pred HHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCc
Q 010005 233 AHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLS 312 (520)
Q Consensus 233 ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (520)
+++.+++ ....++.||+++ ++++++|+++.+.+.++.. ++|... .. ..++.
T Consensus 234 a~~~al~------~~~~~g~yn~~~-~~~~~~el~~~i~~~~~~~----~~~~~~--------------~~----~~~~~ 284 (342)
T PLN02214 234 AHVLVYE------APSASGRYLLAE-SARHRGEVVEILAKLFPEY----PLPTKC--------------KD----EKNPR 284 (342)
T ss_pred HHHHHHh------CcccCCcEEEec-CCCCHHHHHHHHHHHCCCC----CCCCCC--------------cc----ccCCC
Confidence 9999998 233456899987 5789999999999998632 222110 00 00000
Q ss_pred hHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 313 ACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 313 ~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
.....+|++|+++ |||+| .+++|+|+++++|+++...
T Consensus 285 --------~~~~~~d~~k~~~-LG~~p-~~lee~i~~~~~~~~~~~~ 321 (342)
T PLN02214 285 --------AKPYKFTNQKIKD-LGLEF-TSTKQSLYDTVKSLQEKGH 321 (342)
T ss_pred --------CCccccCcHHHHH-cCCcc-cCHHHHHHHHHHHHHHcCC
Confidence 1134579999985 99999 5999999999999987643
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-40 Score=330.34 Aligned_cols=305 Identities=23% Similarity=0.242 Sum_probs=241.8
Q ss_pred eEEEEcCCChhHHHHHHHHHhcC-CcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC--CC
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELG-KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--AS 86 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g-~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~--~D 86 (520)
+|+||||+|+||++++++|+++| +++|+++|+... .+.. ..+......++++++.+|++|++++.+++++ +|
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 75 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTY---AGNL--ENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPD 75 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCc---chhh--hhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCC
Confidence 59999999999999999999987 358988654210 0111 1111111224688999999999999999987 99
Q ss_pred EEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEeecccccccCCCCCCCCCCCccCCCCCCChHHH
Q 010005 87 TVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (520)
Q Consensus 87 ~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~ 162 (520)
+|||+|+.. .+..++..++++|+.++.+++++|++.+++ ++||+||..+||...... +.+|+. +..|.+.|+.
T Consensus 76 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~-~~~e~~--~~~~~~~Y~~ 152 (317)
T TIGR01181 76 AVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGD-AFTETT--PLAPSSPYSA 152 (317)
T ss_pred EEEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCC-CcCCCC--CCCCCCchHH
Confidence 999999872 233567788999999999999999997543 899999999998644322 567766 5577889999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEecCccccCCCC--CchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHh
Q 010005 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEA 240 (520)
Q Consensus 163 sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~ 240 (520)
+|..+|.+++.++.+.+++++++||+.+|||+.. .+++.++..+..++++.++++|++.++|+|++|+++++..+++
T Consensus 153 sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~~~~~~~- 231 (317)
T TIGR01181 153 SKAASDHLVRAYHRTYGLPALITRCSNNYGPYQFPEKLIPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCRAIYLVLE- 231 (317)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCcccHHHHHHHHHhcCCCceEeCCCceEEeeEEHHHHHHHHHHHHc-
Confidence 9999999999988778999999999999999753 5678888888888888888999999999999999999999887
Q ss_pred hhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHh
Q 010005 241 LDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLA 320 (520)
Q Consensus 241 ~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (520)
+...+++||++++++++++|+++.+.+.+|.+...+... . ..+ ..
T Consensus 232 -----~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~~------------------~----~~~----~~---- 276 (317)
T TIGR01181 232 -----KGRVGETYNIGGGNERTNLEVVETILELLGKDEDLITHV------------------E----DRP----GH---- 276 (317)
T ss_pred -----CCCCCceEEeCCCCceeHHHHHHHHHHHhCCCccccccc------------------C----CCc----cc----
Confidence 345568999999999999999999999998753321110 0 000 00
Q ss_pred ccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhh
Q 010005 321 SRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (520)
Q Consensus 321 ~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~ 358 (520)
...+.+|++|+++.|||+|+++++++++++++||+++.
T Consensus 277 ~~~~~~~~~k~~~~lG~~p~~~~~~~i~~~~~~~~~~~ 314 (317)
T TIGR01181 277 DRRYAIDASKIKRELGWAPKYTFEEGLRKTVQWYLDNE 314 (317)
T ss_pred hhhhcCCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcc
Confidence 01234799999999999999999999999999997753
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=332.91 Aligned_cols=309 Identities=21% Similarity=0.195 Sum_probs=222.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
+.++|+||||||+||||++|+++|+++| ++|+++++... +......+......++++++.+|++|.+++.+++++
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g-~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 80 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKG-YAVNTTVRDPE----NQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAG 80 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCC-CEEEEEECCCC----CHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhc
Confidence 5567899999999999999999999999 58987443221 000000000000113578999999999999999999
Q ss_pred CCEEEEcccCCC-CCcch-hhHHhhhHHHHHHHHHHHHHC-CCCEEEEeecccccccCCC--CCCCCCCCcc-------C
Q 010005 85 ASTVFYVDATDL-NTDDF-YNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGSH--DIHNGDETLT-------C 152 (520)
Q Consensus 85 ~D~Vih~aa~~~-~~~~~-~~~~~~Nv~gt~~ll~aa~~~-gvkr~V~~SS~~vyg~~~~--~~~~~~E~~~-------~ 152 (520)
+|+|||+|+... ...++ ...+++|+.|+.+++++|++. +++||||+||.++||.... ...+.+|+.+ .
T Consensus 81 ~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~ 160 (338)
T PLN00198 81 CDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTS 160 (338)
T ss_pred CCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhh
Confidence 999999999732 22333 346799999999999999887 5899999999999974321 1123455421 1
Q ss_pred CCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHH---HHHHhcCCCceEEec-CCCc----cccc
Q 010005 153 CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPL---LVNLAKPGWTKFIIG-SGEN----MSDF 224 (520)
Q Consensus 153 ~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~---l~~~~~~g~~~~i~g-~g~~----~~~~ 224 (520)
+..|.++|+.||..+|++++.+++++|++++++||+++|||++...++. ++..+..++++.+.+ +|.+ .++|
T Consensus 161 ~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 240 (338)
T PLN00198 161 EKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLTSDIPSSLSLAMSLITGNEFLINGLKGMQMLSGSISI 240 (338)
T ss_pred cCCccchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCccCCCCCcHHHHHHHHcCCccccccccccccccCCcce
Confidence 2357788999999999999999988899999999999999986422221 233455566555555 3333 3799
Q ss_pred ccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcc
Q 010005 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGL 304 (520)
Q Consensus 225 i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~ 304 (520)
+||+|+|++++.+++. ...++.| +++++++++.|+++.+.+.++.. .+|... +
T Consensus 241 i~V~D~a~a~~~~~~~------~~~~~~~-~~~~~~~s~~el~~~i~~~~~~~----~~~~~~---------------~- 293 (338)
T PLN00198 241 THVEDVCRAHIFLAEK------ESASGRY-ICCAANTSVPELAKFLIKRYPQY----QVPTDF---------------G- 293 (338)
T ss_pred eEHHHHHHHHHHHhhC------cCcCCcE-EEecCCCCHHHHHHHHHHHCCCC----CCCccc---------------c-
Confidence 9999999999999882 2233467 45557899999999999987632 111110 0
Q ss_pred cccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhh
Q 010005 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (520)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~ 358 (520)
..+. .....+|++|+++ +||+|+++++|||+++++||++..
T Consensus 294 ---~~~~---------~~~~~~~~~k~~~-~G~~p~~~l~~gi~~~~~~~~~~~ 334 (338)
T PLN00198 294 ---DFPS---------KAKLIISSEKLIS-EGFSFEYGIEEIYDQTVEYFKAKG 334 (338)
T ss_pred ---ccCC---------CCccccChHHHHh-CCceecCcHHHHHHHHHHHHHHcC
Confidence 0010 0134579999998 699999999999999999998743
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=329.81 Aligned_cols=312 Identities=19% Similarity=0.211 Sum_probs=237.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCCCC--CCCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDS--LSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~-~~~l~~~--~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
++++|+||||+||||+++++.|+++| ++|+++|+... +... ....... ....+++++.+|+.|++++.++++
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~ 78 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLLAG-YKVVVIDNLDN----SSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFA 78 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCCc----chHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHH
Confidence 45899999999999999999999999 59999664321 0000 0000000 012367899999999999999886
Q ss_pred --CCCEEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCC
Q 010005 84 --GASTVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQD 158 (520)
Q Consensus 84 --~~D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~ 158 (520)
++|+|||+|+.. ....++...++.|+.++.+++++|++.++++|||+||+.+||... ..+.+|+. +..|.+
T Consensus 79 ~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~vyg~~~--~~~~~E~~--~~~~~~ 154 (352)
T PLN02240 79 STRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSSATVYGQPE--EVPCTEEF--PLSATN 154 (352)
T ss_pred hCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCC--CCCCCCCC--CCCCCC
Confidence 689999999862 233567889999999999999999999999999999999997432 33678887 567889
Q ss_pred hHHHHHHHHHHHHHHhcCC-CCceEEEEecCccccCCCC------------CchHHHHHHhcCCC--ceEEec------C
Q 010005 159 LMCDLKAQAEALVLFANNI-DGLLTCALRPSNVFGPGDT------------QLVPLLVNLAKPGW--TKFIIG------S 217 (520)
Q Consensus 159 ~Y~~sK~~~E~~~~~~~~~-~gi~~~ilRp~~vyGp~~~------------~~~~~l~~~~~~g~--~~~i~g------~ 217 (520)
.|+.+|..+|++++.++.. .+++++++|++++||++.. .+++ ++..+..++ .+.+++ +
T Consensus 155 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~ 233 (352)
T PLN02240 155 PYGRTKLFIEEICRDIHASDPEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMP-YVQQVAVGRRPELTVFGNDYPTKD 233 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEeecCcCCCCccccccCCCCCCcchHHH-HHHHHHhCCCCceEEeCCCCCCCC
Confidence 9999999999999988643 5799999999999997431 1223 334444333 344554 6
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHH
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKW 297 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~ 297 (520)
|.+.++|+|++|+|++++.+++.+... ....+++||+++++++|++|+++.+.+.+|.+.+....|.
T Consensus 234 g~~~~~~i~v~D~a~a~~~a~~~~~~~-~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~------------ 300 (352)
T PLN02240 234 GTGVRDYIHVMDLADGHIAALRKLFTD-PDIGCEAYNLGTGKGTSVLEMVAAFEKASGKKIPLKLAPR------------ 300 (352)
T ss_pred CCEEEeeEEHHHHHHHHHHHHhhhhhc-cCCCCceEEccCCCcEeHHHHHHHHHHHhCCCCCceeCCC------------
Confidence 899999999999999999988743211 2345689999999999999999999999987654333221
Q ss_pred HHHHhcccccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhc
Q 010005 298 IHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (520)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~ 360 (520)
.+. .. .....|++|++++|||+|+++++|+|+++++|++++...
T Consensus 301 -----------~~~-~~-------~~~~~d~~k~~~~lg~~p~~~l~~~l~~~~~~~~~~~~~ 344 (352)
T PLN02240 301 -----------RPG-DA-------EEVYASTEKAEKELGWKAKYGIDEMCRDQWNWASKNPYG 344 (352)
T ss_pred -----------CCC-Ch-------hhhhcCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCccc
Confidence 010 00 123469999999999999999999999999999987543
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=321.41 Aligned_cols=280 Identities=14% Similarity=0.096 Sum_probs=220.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--CCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~~D 86 (520)
||||||||+||||+++++.|+++| +|+++| |.. ..+.+|++|.+.+.++++ ++|
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~--------~~~--------------~~~~~Dl~d~~~~~~~~~~~~~D 56 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG--NLIALD--------VHS--------------TDYCGDFSNPEGVAETVRKIRPD 56 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC--CEEEec--------ccc--------------ccccCCCCCHHHHHHHHHhcCCC
Confidence 589999999999999999999998 377744 321 124689999999999998 589
Q ss_pred EEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHH
Q 010005 87 TVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (520)
Q Consensus 87 ~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~s 163 (520)
+|||||+.. .+..+++..+++|+.++.+++++|++.|+ +|||+||..|||... ..+.+|++ +..|.++|+.+
T Consensus 57 ~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~-~~v~~Ss~~Vy~~~~--~~p~~E~~--~~~P~~~Yg~s 131 (299)
T PRK09987 57 VIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVGA-WVVHYSTDYVFPGTG--DIPWQETD--ATAPLNVYGET 131 (299)
T ss_pred EEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEccceEECCCC--CCCcCCCC--CCCCCCHHHHH
Confidence 999999982 34467788889999999999999999996 799999999996432 23678887 56899999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecC--CCcccccccHHHHHHHHHHHHHhh
Q 010005 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGS--GENMSDFTYVENVAHAHVCAAEAL 241 (520)
Q Consensus 164 K~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~--g~~~~~~i~v~Dva~ai~~~~~~~ 241 (520)
|..+|++++.++. +.+++|++++|||+++.+++.+++.+..++++.+.++ |.+.+++.+++|+++++..+++
T Consensus 132 K~~~E~~~~~~~~----~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~v~~d~~g~~~~~~~~~d~~~~~~~~~~~-- 205 (299)
T PRK09987 132 KLAGEKALQEHCA----KHLIFRTSWVYAGKGNNFAKTMLRLAKEREELSVINDQFGAPTGAELLADCTAHAIRVALN-- 205 (299)
T ss_pred HHHHHHHHHHhCC----CEEEEecceecCCCCCCHHHHHHHHHhcCCCeEEeCCCcCCCCCHHHHHHHHHHHHHHhhc--
Confidence 9999999988754 4699999999999887888888888888888888888 7777777778888888887775
Q ss_pred hcccccCCCceEEEeCCCCcCHHHHHHHHHHHcC---CCCC---cccCChHHHHHHHHHHHHHHHHhcccccCCCCchHH
Q 010005 242 DSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLG---YQRP---FIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACY 315 (520)
Q Consensus 242 ~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g---~~~~---~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (520)
.. ..+++||+++++++|+.|+++.+.+..+ .+.+ ...+|... .. .+..++
T Consensus 206 ---~~-~~~giyni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~i~~~~~~~--------------~~-----~~~~rp- 261 (299)
T PRK09987 206 ---KP-EVAGLYHLVASGTTTWHDYAALVFEEARKAGITLALNKLNAVPTSA--------------YP-----TPARRP- 261 (299)
T ss_pred ---cC-CCCCeEEeeCCCCccHHHHHHHHHHHHHhcCCCcCcCeeeecchhh--------------cC-----CCCCCC-
Confidence 12 2346999999999999999999988643 3321 11121100 00 000011
Q ss_pred HHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 010005 316 IVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354 (520)
Q Consensus 316 ~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~ 354 (520)
.+..+|++|+++.|||+|. +++|+|+++++.+
T Consensus 262 ------~~~~ld~~k~~~~lg~~~~-~~~~~l~~~~~~~ 293 (299)
T PRK09987 262 ------HNSRLNTEKFQQNFALVLP-DWQVGVKRMLTEL 293 (299)
T ss_pred ------CcccCCHHHHHHHhCCCCc-cHHHHHHHHHHHH
Confidence 2456799999999999996 9999999998754
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=323.17 Aligned_cols=299 Identities=28% Similarity=0.357 Sum_probs=240.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC-CE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA-ST 87 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~-D~ 87 (520)
|+||||||+||||++|+++|+++| ++|+++|+.. .+.... . .++.++.+|+.|.+...+..+++ |+
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g-~~V~~~~r~~--------~~~~~~---~-~~~~~~~~d~~~~~~~~~~~~~~~d~ 67 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAG-HDVRGLDRLR--------DGLDPL---L-SGVEFVVLDLTDRDLVDELAKGVPDA 67 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCC-CeEEEEeCCC--------cccccc---c-cccceeeecccchHHHHHHHhcCCCE
Confidence 359999999999999999999999 5999965432 211000 1 46789999999998888888888 99
Q ss_pred EEEcccCCCC---Cc-chhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHH
Q 010005 88 VFYVDATDLN---TD-DFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (520)
Q Consensus 88 Vih~aa~~~~---~~-~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~s 163 (520)
|||+|+.... .. ++...+++|+.++.|++++|++.+++|+||+||.++|+.. ....+.+|+. .+..|.++|+.+
T Consensus 68 vih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss~~~~~~~-~~~~~~~E~~-~~~~p~~~Yg~s 145 (314)
T COG0451 68 VIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVVYGD-PPPLPIDEDL-GPPRPLNPYGVS 145 (314)
T ss_pred EEEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCceECCC-CCCCCccccc-CCCCCCCHHHHH
Confidence 9999998321 11 3567999999999999999999999999999998988765 3333678874 366787799999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEecCccccCCCCC-----chHHHHHHhcCCCc-eEEecCCCcccccccHHHHHHHHHHH
Q 010005 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-----LVPLLVNLAKPGWT-KFIIGSGENMSDFTYVENVAHAHVCA 237 (520)
Q Consensus 164 K~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~-----~~~~l~~~~~~g~~-~~i~g~g~~~~~~i~v~Dva~ai~~~ 237 (520)
|.++|+.+..+.+++|++++++||+.+|||++.. ....++..+..+.+ +...+++...++|+|++|++++++.+
T Consensus 146 K~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~ 225 (314)
T COG0451 146 KLAAEQLLRAYARLYGLPVVILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLA 225 (314)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCCCCCcCcHHHHHHHHHhCCCcceEeCCCceeEeeEeHHHHHHHHHHH
Confidence 9999999999988789999999999999999763 44555555677775 66777889999999999999999999
Q ss_pred HHhhhcccccCCCceEEEeCCC-CcCHHHHHHHHHHHcCCCCCc-ccCChHHHHHHHHHHHHHHHHhcccccCCCCchHH
Q 010005 238 AEALDSRMVSVAGMAFFITNLE-PIKFWDFLSIILEGLGYQRPF-IKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACY 315 (520)
Q Consensus 238 ~~~~~~~~~~~~g~~yni~~~~-~~t~~el~~~i~~~~g~~~~~-v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (520)
++ ....+ .||+++++ +++++|+++.+.+.+|.+.+. ...+. .
T Consensus 226 ~~------~~~~~-~~ni~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-----------------------------~ 269 (314)
T COG0451 226 LE------NPDGG-VFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPL-----------------------------G 269 (314)
T ss_pred Hh------CCCCc-EEEeCCCCCcEEHHHHHHHHHHHhCCCCcceeecCC-----------------------------C
Confidence 98 23333 99999997 999999999999999987652 11110 0
Q ss_pred HHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhh
Q 010005 316 IVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (520)
Q Consensus 316 ~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~ 358 (520)
..........+|.+|+++.|||+|++++++++.++++|+....
T Consensus 270 ~~~~~~~~~~~~~~~~~~~lg~~p~~~~~~~i~~~~~~~~~~~ 312 (314)
T COG0451 270 RRGDLREGKLLDISKARAALGWEPKVSLEEGLADTLEWLLKKL 312 (314)
T ss_pred CCCcccccccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhh
Confidence 0011123567799999999999999999999999999998754
|
|
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=311.37 Aligned_cols=311 Identities=19% Similarity=0.198 Sum_probs=249.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCC-CCCCCCcEEEEecCCCHHHHHHHHc--C
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD-SLSSGRAEYHQVDVRDISQIKKVLE--G 84 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~-~~~~~~v~~~~~Dl~d~~~l~~~l~--~ 84 (520)
.++||||||+||||+|.+.+|+++| |.|+++|.-.+.. .++-...++ .....++.++++|++|.+.++++|+ +
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~g-y~v~~vDNl~n~~---~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~ 77 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRG-YGVVIVDNLNNSY---LESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVK 77 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCC-CcEEEEecccccc---hhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcC
Confidence 5799999999999999999999999 7999999844221 111111111 1124689999999999999999997 5
Q ss_pred CCEEEEcccC---CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHH
Q 010005 85 ASTVFYVDAT---DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (520)
Q Consensus 85 ~D~Vih~aa~---~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~ 161 (520)
+|.|+|+|+. ..+..+|..+++.|+.||.|++++|++++++.+||+||+.|||... ..|++|+.|.. .|.++|+
T Consensus 78 fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssatvYG~p~--~ip~te~~~t~-~p~~pyg 154 (343)
T KOG1371|consen 78 FDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSATVYGLPT--KVPITEEDPTD-QPTNPYG 154 (343)
T ss_pred CceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecceeeecCcc--eeeccCcCCCC-CCCCcch
Confidence 8999999998 5677889999999999999999999999999999999999996544 47899998644 6999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEecCcccc--CCCC----------CchHHHHHHh--------cCCCceEEecCCCcc
Q 010005 162 DLKAQAEALVLFANNIDGLLTCALRPSNVFG--PGDT----------QLVPLLVNLA--------KPGWTKFIIGSGENM 221 (520)
Q Consensus 162 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyG--p~~~----------~~~~~l~~~~--------~~g~~~~i~g~g~~~ 221 (520)
.+|.+.|+.+..++..+++..+.||.++++| |..+ +++|...+.+ .-|.+ ....||+..
T Consensus 155 ~tK~~iE~i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p~~~~nnl~p~v~~vaigr~~~l~v~g~d-~~t~dgt~v 233 (343)
T KOG1371|consen 155 KTKKAIEEIIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAPLGIPNNLLPYVFQVAIGRRPNLQVVGRD-YTTIDGTIV 233 (343)
T ss_pred hhhHHHHHHHHhhhccccceEEEEEeccccCccccCccCCCCccCcccccccccchhhcccccceeecCc-ccccCCCee
Confidence 9999999999999999999999999999999 4321 2333222222 23333 234477999
Q ss_pred cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHH
Q 010005 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEK 301 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~ 301 (520)
++++|+-|.|..++.+++.+. ....-++||++++...++.|++..++++.|.+.+..-+|
T Consensus 234 rdyi~v~Dla~~h~~al~k~~---~~~~~~i~Nlgtg~g~~V~~lv~a~~k~~g~~~k~~~v~----------------- 293 (343)
T KOG1371|consen 234 RDYIHVLDLADGHVAALGKLR---GAAEFGVYNLGTGKGSSVLELVTAFEKALGVKIKKKVVP----------------- 293 (343)
T ss_pred ecceeeEehHHHHHHHhhccc---cchheeeEeecCCCCccHHHHHHHHHHHhcCCCCccccC-----------------
Confidence 999999999999999998543 222334999999999999999999999999987654443
Q ss_pred hcccccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhc
Q 010005 302 LGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (520)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~ 360 (520)
.+.++.+ ..+.+.+++.++|||+|.++++|++++.+.|+.++...
T Consensus 294 --~R~gdv~------------~~ya~~~~a~~elgwk~~~~iee~c~dlw~W~~~np~g 338 (343)
T KOG1371|consen 294 --RRNGDVA------------FVYANPSKAQRELGWKAKYGLQEMLKDLWRWQKQNPSG 338 (343)
T ss_pred --CCCCCce------------eeeeChHHHHHHhCCccccCHHHHHHHHHHHHhcCCCc
Confidence 1111222 56779999999999999999999999999999997654
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=324.63 Aligned_cols=307 Identities=20% Similarity=0.230 Sum_probs=232.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCC--CCCCCCCcEEEEecCCCHHHHHHHHc--C
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLP--DSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~--~~~~~~~v~~~~~Dl~d~~~l~~~l~--~ 84 (520)
|+||||||+||||+++++.|+++| ++|+++|+.. ++... .+. ......+..++.+|+.|.+++.++++ +
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 73 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVVILDNLC-----NSKRS-VLPVIERLGGKHPTFVEGDIRNEALLTEILHDHA 73 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC-CeEEEEecCC-----CchHh-HHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCC
Confidence 589999999999999999999999 5999865421 11110 000 01112356788999999999999887 5
Q ss_pred CCEEEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHH
Q 010005 85 ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (520)
Q Consensus 85 ~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~ 161 (520)
+|+|||+|+... ...++...+++|+.++.+++++|++.++++||++||.++||... ..+.+|+.| ...|.+.|+
T Consensus 74 ~d~vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~yg~~~--~~~~~E~~~-~~~p~~~Y~ 150 (338)
T PRK10675 74 IDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSSATVYGDQP--KIPYVESFP-TGTPQSPYG 150 (338)
T ss_pred CCEEEECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhhCCCC--CCccccccC-CCCCCChhH
Confidence 899999998732 23456788999999999999999999999999999999997532 246788774 236789999
Q ss_pred HHHHHHHHHHHHhcCC-CCceEEEEecCccccCCCC------------CchHHHHHHhcCCC-ceEEec------CCCcc
Q 010005 162 DLKAQAEALVLFANNI-DGLLTCALRPSNVFGPGDT------------QLVPLLVNLAKPGW-TKFIIG------SGENM 221 (520)
Q Consensus 162 ~sK~~~E~~~~~~~~~-~gi~~~ilRp~~vyGp~~~------------~~~~~l~~~~~~g~-~~~i~g------~g~~~ 221 (520)
.+|..+|++++.++++ .+++++++|++++|||... .+++.+.+....+. .+.+++ +|+++
T Consensus 151 ~sK~~~E~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 230 (338)
T PRK10675 151 KSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230 (338)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEeeeecCCCcccccccCCCCChhHHHHHHHHHHhcCCCceEEeCCcCCCCCCcEE
Confidence 9999999999998754 4799999999999997421 12344443333322 344544 67889
Q ss_pred cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHH
Q 010005 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEK 301 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~ 301 (520)
++|+|++|+|++++.+++... ....+++||++++++++++|+++.+.+.+|.+.+....|.
T Consensus 231 ~~~v~v~D~a~~~~~~~~~~~---~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~---------------- 291 (338)
T PRK10675 231 RDYIHVMDLADGHVAAMEKLA---NKPGVHIYNLGAGVGSSVLDVVNAFSKACGKPVNYHFAPR---------------- 291 (338)
T ss_pred EeeEEHHHHHHHHHHHHHhhh---ccCCCceEEecCCCceeHHHHHHHHHHHhCCCCCeeeCCC----------------
Confidence 999999999999999887311 1234579999999999999999999999997644322221
Q ss_pred hcccccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 302 LGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
.+. .. ...++|++|+++++||+|+++++++++++++|++++..
T Consensus 292 -------~~~----~~----~~~~~~~~k~~~~lg~~p~~~~~~~~~~~~~~~~~~~~ 334 (338)
T PRK10675 292 -------REG----DL----PAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQ 334 (338)
T ss_pred -------CCC----ch----hhhhcCHHHHHHHhCCCCcCcHHHHHHHHHHHHHhhhh
Confidence 000 00 12457999999999999999999999999999988643
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=324.25 Aligned_cols=287 Identities=19% Similarity=0.189 Sum_probs=211.6
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCH---HH-HHHHHc---
Q 010005 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI---SQ-IKKVLE--- 83 (520)
Q Consensus 11 ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~---~~-l~~~l~--- 83 (520)
||||||+||||+||+++|+++|+..|.++|.. ..... ......+|+.|. +. +.++++
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~--------~~~~~--------~~~~~~~~~~d~~~~~~~~~~~~~~~~ 65 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNL--------KDGTK--------FVNLVDLDIADYMDKEDFLAQIMAGDD 65 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCC--------CcchH--------HHhhhhhhhhhhhhHHHHHHHHhcccc
Confidence 89999999999999999999995245553321 11000 012234455543 33 333432
Q ss_pred --CCCEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChH
Q 010005 84 --GASTVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLM 160 (520)
Q Consensus 84 --~~D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y 160 (520)
++|+|||+||. .....++...++.|+.++.+++++|++.++ +|||+||+++||.... .+.+|+. +..|.++|
T Consensus 66 ~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~-~~i~~SS~~vyg~~~~--~~~~E~~--~~~p~~~Y 140 (308)
T PRK11150 66 FGDIEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTD--DFIEERE--YEKPLNVY 140 (308)
T ss_pred cCCccEEEECceecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC-cEEEEcchHHhCcCCC--CCCccCC--CCCCCCHH
Confidence 68999999986 222235567899999999999999999997 6999999999986432 2466765 56788999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCC------chHHHHHHhcCCCceEEe-cCCCcccccccHHHHHHH
Q 010005 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ------LVPLLVNLAKPGWTKFII-GSGENMSDFTYVENVAHA 233 (520)
Q Consensus 161 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~------~~~~l~~~~~~g~~~~i~-g~g~~~~~~i~v~Dva~a 233 (520)
+.+|..+|++++.++.+.+++++++||+++|||++.. ....+.+.+.+|++..++ ++++..++|+|++|+|++
T Consensus 141 ~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~r~~i~v~D~a~a 220 (308)
T PRK11150 141 GYSKFLFDEYVRQILPEANSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNGENPKLFEGSENFKRDFVYVGDVAAV 220 (308)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeeeeecCCCCCCCCccchhHHHHHHHHhcCCCCEEecCCCceeeeeeeHHHHHHH
Confidence 9999999999999987789999999999999998642 233455667777654454 566778999999999999
Q ss_pred HHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCC-CcccCChHHHHHHHHHHHHHHHHhcccccCCCCc
Q 010005 234 HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQR-PFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLS 312 (520)
Q Consensus 234 i~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~-~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (520)
++.+++ .. .+++||++++++++++|+++.+.+.+|... ...+.|.. .
T Consensus 221 ~~~~~~------~~-~~~~yni~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~-------------------------~ 268 (308)
T PRK11150 221 NLWFWE------NG-VSGIFNCGTGRAESFQAVADAVLAYHKKGEIEYIPFPDK-------------------------L 268 (308)
T ss_pred HHHHHh------cC-CCCeEEcCCCCceeHHHHHHHHHHHhCCCcceeccCccc-------------------------c
Confidence 998887 22 356999999999999999999999998531 11111100 0
Q ss_pred hHHHHHHhccceEechHHHHHhcCCCCC-CCHHHHHHHHHHHHH
Q 010005 313 ACYIVQLASRTRTFDCIAAQKHIGYSPV-VSLEEGVSSTIQSFS 355 (520)
Q Consensus 313 ~~~~~~~~~~~~~~d~~ka~~~LG~~p~-~sleegi~~~~~~~~ 355 (520)
.. ........|++|+++ +||+|+ .+++|+++++++|+.
T Consensus 269 ~~----~~~~~~~~d~~k~~~-~g~~p~~~~~~~gl~~~~~~~~ 307 (308)
T PRK11150 269 KG----RYQAFTQADLTKLRA-AGYDKPFKTVAEGVAEYMAWLN 307 (308)
T ss_pred cc----ccceecccCHHHHHh-cCCCCCCCCHHHHHHHHHHHhh
Confidence 00 011134579999987 799997 499999999999975
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-39 Score=327.92 Aligned_cols=302 Identities=22% Similarity=0.244 Sum_probs=217.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCC----CCCCCcEEEEecCCCHHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDS----LSSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~----~~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
..|+||||||+||||++++++|+++| ++|+++++. .... .+... ....+++++.+|++|.+.+.++
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G-~~V~~~~r~--------~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~ 74 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERG-YTVRATVRD--------PANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDA 74 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCC-CEEEEEEcC--------cchhHHHHHHHhccCCCCceEEEEecCCChhhHHHH
Confidence 35799999999999999999999999 599985443 2110 00000 0113578899999999999999
Q ss_pred HcCCCEEEEcccCC-CCCcch-hhHHhhhHHHHHHHHHHHHHCC-CCEEEEeecccccccCCCCCCCCCCCccC------
Q 010005 82 LEGASTVFYVDATD-LNTDDF-YNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTC------ 152 (520)
Q Consensus 82 l~~~D~Vih~aa~~-~~~~~~-~~~~~~Nv~gt~~ll~aa~~~g-vkr~V~~SS~~vyg~~~~~~~~~~E~~~~------ 152 (520)
++++|+|||+|+.. ....++ ...+++|+.|+.+++++|++.+ ++||||+||.++|+.........+|+.+.
T Consensus 75 ~~~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~ 154 (351)
T PLN02650 75 IRGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCR 154 (351)
T ss_pred HhCCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhh
Confidence 99999999999873 222233 4789999999999999999987 88999999998886433222224555321
Q ss_pred -CCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCC-chHHHHHHh--cCCCceEEecCCCcccccccHH
Q 010005 153 -CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-LVPLLVNLA--KPGWTKFIIGSGENMSDFTYVE 228 (520)
Q Consensus 153 -~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~-~~~~l~~~~--~~g~~~~i~g~g~~~~~~i~v~ 228 (520)
+..|.++|+.||..+|++++.+++++|++++++||+++|||++.. ..+.+...+ ..+.. ...+. .+.++|+||+
T Consensus 155 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~r~~v~V~ 232 (351)
T PLN02650 155 RKKMTGWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTSMPPSLITALSLITGNE-AHYSI-IKQGQFVHLD 232 (351)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCCCCccHHHHHHHhcCCc-cccCc-CCCcceeeHH
Confidence 123557899999999999999998899999999999999998643 222222221 22332 12232 2357999999
Q ss_pred HHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccC
Q 010005 229 NVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYN 308 (520)
Q Consensus 229 Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~ 308 (520)
|+|++++.+++ .+ ..++.| +++++++++.|+++.+.+.++.. .+|... .+
T Consensus 233 Dva~a~~~~l~-----~~-~~~~~~-i~~~~~~s~~el~~~i~~~~~~~----~~~~~~--------------~~----- 282 (351)
T PLN02650 233 DLCNAHIFLFE-----HP-AAEGRY-ICSSHDATIHDLAKMLREKYPEY----NIPARF--------------PG----- 282 (351)
T ss_pred HHHHHHHHHhc-----Cc-CcCceE-EecCCCcCHHHHHHHHHHhCccc----CCCCCC--------------CC-----
Confidence 99999999987 22 234478 56668899999999999987632 122110 00
Q ss_pred CCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhh
Q 010005 309 HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (520)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~ 358 (520)
.+ .. .....+|++|++ +|||+|+++++|+|+++++||++..
T Consensus 283 ~~----~~----~~~~~~d~~k~~-~lG~~p~~~l~egl~~~i~~~~~~~ 323 (351)
T PLN02650 283 ID----ED----LKSVEFSSKKLT-DLGFTFKYSLEDMFDGAIETCREKG 323 (351)
T ss_pred cC----cc----cccccCChHHHH-HhCCCCCCCHHHHHHHHHHHHHHcC
Confidence 00 00 012346888875 5999999999999999999998754
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=323.44 Aligned_cols=303 Identities=18% Similarity=0.177 Sum_probs=220.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC-CCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS-LSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~-~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
++|+||||||+||||++++++|+++| ++|+++++... .......+... ...++++++.+|++|++++.++++++
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g-~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRG-YTVKATVRDPN----DPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGC 77 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCC-CEEEEEEcCCC----chhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCC
Confidence 46899999999999999999999999 59998544321 00000000000 01246889999999999999999999
Q ss_pred CEEEEcccCC-CCCcchh-hHHhhhHHHHHHHHHHHHHC-CCCEEEEeecccc--cccCCC-CCCCCCCCccCCC----C
Q 010005 86 STVFYVDATD-LNTDDFY-NCYMIIVQGAKNVVTACREC-KVRRLVYNSTADV--VFDGSH-DIHNGDETLTCCW----K 155 (520)
Q Consensus 86 D~Vih~aa~~-~~~~~~~-~~~~~Nv~gt~~ll~aa~~~-gvkr~V~~SS~~v--yg~~~~-~~~~~~E~~~~~~----~ 155 (520)
|+|||+|+.. ....++. .++++|+.|+.+++++|++. +++||||+||.++ |+.... ...+.+|+.+..+ .
T Consensus 78 d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~~p~~~~~ 157 (322)
T PLN02662 78 EGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPAFCEE 157 (322)
T ss_pred CEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcCCCCCCcCCcccCCChhHhhc
Confidence 9999999972 2233443 78899999999999999998 8999999999874 543221 2235677653211 1
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC---CchHHHHHHhcCCCceEEecCCCcccccccHHHHHH
Q 010005 156 FQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT---QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAH 232 (520)
Q Consensus 156 p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~---~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ 232 (520)
..+.|+.+|..+|++++.+.++++++++++||+++|||+.. .....++..+..|+.. .+++.++|+||+|+|+
T Consensus 158 ~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~v~Dva~ 233 (322)
T PLN02662 158 SKLWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQPTLNTSAEAILNLINGAQT----FPNASYRWVDVRDVAN 233 (322)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCCCCCchHHHHHHHhcCCcc----CCCCCcCeEEHHHHHH
Confidence 23689999999999999998888999999999999999864 2334444444445431 1346799999999999
Q ss_pred HHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCc
Q 010005 233 AHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLS 312 (520)
Q Consensus 233 ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (520)
+++.+++ .+.. ++.||+++ ++++++|+++.+.+.++.. .+|.+. .+ ..+ .
T Consensus 234 a~~~~~~-----~~~~-~~~~~~~g-~~~s~~e~~~~i~~~~~~~----~~~~~~--------------~~----~~~-~ 283 (322)
T PLN02662 234 AHIQAFE-----IPSA-SGRYCLVE-RVVHYSEVVKILHELYPTL----QLPEKC--------------AD----DKP-Y 283 (322)
T ss_pred HHHHHhc-----CcCc-CCcEEEeC-CCCCHHHHHHHHHHHCCCC----CCCCCC--------------CC----ccc-c
Confidence 9999988 2222 34789974 7899999999999987642 222110 00 000 0
Q ss_pred hHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhh
Q 010005 313 ACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (520)
Q Consensus 313 ~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~ 358 (520)
.....+|++|+++ |||+| ++++|+++++++||+++.
T Consensus 284 --------~~~~~~d~~k~~~-lg~~~-~~~~~~l~~~~~~~~~~~ 319 (322)
T PLN02662 284 --------VPTYQVSKEKAKS-LGIEF-IPLEVSLKDTVESLKEKG 319 (322)
T ss_pred --------ccccccChHHHHH-hCCcc-ccHHHHHHHHHHHHHHcC
Confidence 0135689999996 99998 599999999999998753
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=322.33 Aligned_cols=283 Identities=17% Similarity=0.218 Sum_probs=222.6
Q ss_pred EEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--CCCEEE
Q 010005 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GASTVF 89 (520)
Q Consensus 12 LVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~~D~Vi 89 (520)
|||||+||||++|++.|+++|+ +|+++ .+. ..+|++|.+++.++++ ++|+||
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~-~v~~~--------~~~-----------------~~~Dl~~~~~l~~~~~~~~~d~Vi 54 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGF-TNLVL--------RTH-----------------KELDLTRQADVEAFFAKEKPTYVI 54 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCC-cEEEe--------ecc-----------------ccCCCCCHHHHHHHHhccCCCEEE
Confidence 6999999999999999999995 65552 111 1489999999999887 479999
Q ss_pred EcccCCC----CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccC--CCCCCC-hHHH
Q 010005 90 YVDATDL----NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC--CWKFQD-LMCD 162 (520)
Q Consensus 90 h~aa~~~----~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~--~~~p~~-~Y~~ 162 (520)
|+|+... ...++...++.|+.++.+++++|++.+++||||+||..|||... ..+.+|+++. +..|.+ .|+.
T Consensus 55 h~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~SS~~vyg~~~--~~~~~E~~~~~~~~~p~~~~Y~~ 132 (306)
T PLN02725 55 LAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFLGSSCIYPKFA--PQPIPETALLTGPPEPTNEWYAI 132 (306)
T ss_pred EeeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEeCceeecCCCC--CCCCCHHHhccCCCCCCcchHHH
Confidence 9998721 33567788999999999999999999999999999999997543 3467887632 334544 5999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEecCccccCCCC------CchHHHHH----HhcCCCceEE-ecCCCcccccccHHHHH
Q 010005 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVN----LAKPGWTKFI-IGSGENMSDFTYVENVA 231 (520)
Q Consensus 163 sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~------~~~~~l~~----~~~~g~~~~i-~g~g~~~~~~i~v~Dva 231 (520)
+|..+|++++.++++++++++++||+.+|||++. .+++.++. ....+.++.+ +++|++.++|+|++|++
T Consensus 133 sK~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv~ 212 (306)
T PLN02725 133 AKIAGIKMCQAYRIQYGWDAISGMPTNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVWGSGSPLREFLHVDDLA 212 (306)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCCCCCcccHHHHHHHHHHhhcCCCeEEEcCCCCeeeccccHHHHH
Confidence 9999999999988878999999999999999753 34454443 3456666555 78899999999999999
Q ss_pred HHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCC
Q 010005 232 HAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSL 311 (520)
Q Consensus 232 ~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (520)
++++.+++. ...++.||+++++++++.|+++.+.+.+|.+......+ ..+
T Consensus 213 ~~~~~~~~~------~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~-----------------------~~~- 262 (306)
T PLN02725 213 DAVVFLMRR------YSGAEHVNVGSGDEVTIKELAELVKEVVGFEGELVWDT-----------------------SKP- 262 (306)
T ss_pred HHHHHHHhc------cccCcceEeCCCCcccHHHHHHHHHHHhCCCCceeecC-----------------------CCC-
Confidence 999998872 22346789999999999999999999998653221111 000
Q ss_pred chHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhc
Q 010005 312 SACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (520)
Q Consensus 312 ~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~ 360 (520)
.. .....+|++|+++ +||+|+++++|+++++++|++++.++
T Consensus 263 ~~-------~~~~~~d~~k~~~-lg~~p~~~~~~~l~~~~~~~~~~~~~ 303 (306)
T PLN02725 263 DG-------TPRKLMDSSKLRS-LGWDPKFSLKDGLQETYKWYLENYET 303 (306)
T ss_pred Cc-------ccccccCHHHHHH-hCCCCCCCHHHHHHHHHHHHHhhhhc
Confidence 00 0134579999975 99999999999999999999987664
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=322.36 Aligned_cols=300 Identities=19% Similarity=0.163 Sum_probs=223.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCC---C-CCCCCCcEEEEecCCCHHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLP---D-SLSSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~---~-~~~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
++|+||||||+||||+++++.|+++| ++|++.++ +.... ... . .....+++++.+|++|.+++.++
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G-~~V~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~ 74 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRG-YTINATVR--------DPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELA 74 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEEc--------CCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHH
Confidence 36899999999999999999999999 58887433 22210 000 0 00124678899999999999999
Q ss_pred HcCCCEEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHC-CCCEEEEeecccccccCC---CCCCCCCCCccCCC
Q 010005 82 LEGASTVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGS---HDIHNGDETLTCCW 154 (520)
Q Consensus 82 l~~~D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~-gvkr~V~~SS~~vyg~~~---~~~~~~~E~~~~~~ 154 (520)
++++|+|||+|+.. .+..++...+++|+.++.+++++|.+. +++|||++||.++|+... ....+.+|+.+..+
T Consensus 75 ~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p 154 (325)
T PLN02989 75 IDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNP 154 (325)
T ss_pred HcCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCch
Confidence 99999999999972 233456788999999999999999986 578999999998876432 12235678764321
Q ss_pred ----CCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCC---chHHHHHHhcCCCceEEecCCCcccccccH
Q 010005 155 ----KFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ---LVPLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (520)
Q Consensus 155 ----~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~---~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v 227 (520)
.+.++|+.||..+|+++..+.+++|++++++||+++|||++.. +...++..+..|+.. .+ .+.++|+||
T Consensus 155 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~i~~~~~~~~~--~~--~~~r~~i~v 230 (325)
T PLN02989 155 SFAEERKQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPTLNFSVAVIVELMKGKNP--FN--TTHHRFVDV 230 (325)
T ss_pred hHhcccccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCCCCchHHHHHHHHcCCCC--CC--CcCcCeeEH
Confidence 2347899999999999999988789999999999999998753 444455555556542 22 356899999
Q ss_pred HHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhccccc
Q 010005 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTY 307 (520)
Q Consensus 228 ~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~ 307 (520)
+|+|++++.+++. +. .++.||+++ ++++++|+++.+.+.++.. .++. ...
T Consensus 231 ~Dva~a~~~~l~~-----~~-~~~~~ni~~-~~~s~~ei~~~i~~~~~~~----~~~~------------------~~~- 280 (325)
T PLN02989 231 RDVALAHVKALET-----PS-ANGRYIIDG-PVVTIKDIENVLREFFPDL----CIAD------------------RNE- 280 (325)
T ss_pred HHHHHHHHHHhcC-----cc-cCceEEEec-CCCCHHHHHHHHHHHCCCC----CCCC------------------CCC-
Confidence 9999999999872 22 345899964 6899999999999998732 1110 000
Q ss_pred CCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhh
Q 010005 308 NHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (520)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~ 357 (520)
..++. -...+..|++|+++ |||+|+++++|||+++++||++.
T Consensus 281 ~~~~~-------~~~~~~~~~~k~~~-lg~~p~~~l~~gi~~~~~~~~~~ 322 (325)
T PLN02989 281 DITEL-------NSVTFNVCLDKVKS-LGIIEFTPTETSLRDTVLSLKEK 322 (325)
T ss_pred Ccccc-------cccCcCCCHHHHHH-cCCCCCCCHHHHHHHHHHHHHHh
Confidence 00000 00134668999887 99999999999999999999764
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=319.25 Aligned_cols=294 Identities=21% Similarity=0.191 Sum_probs=225.1
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc----CCC
Q 010005 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE----GAS 86 (520)
Q Consensus 11 ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~----~~D 86 (520)
||||||+||||+++++.|.++|+++|+++|+ ......+.+ .....+.+|+.+.+.++.+.+ ++|
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~--------~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~D 68 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDN--------LRDGHKFLN----LADLVIADYIDKEDFLDRLEKGAFGKIE 68 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEec--------CCCchhhhh----hhheeeeccCcchhHHHHHHhhccCCCC
Confidence 6999999999999999999999547888543 221111111 112456788888877776664 799
Q ss_pred EEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHH
Q 010005 87 TVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKA 165 (520)
Q Consensus 87 ~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~ 165 (520)
+|||+|+. .....++...+++|+.++.+++++|++.++ +|||+||..+||.... +.+|+++ +..|.+.|+.+|.
T Consensus 69 ~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~---~~~e~~~-~~~p~~~Y~~sK~ 143 (314)
T TIGR02197 69 AIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEKGI-PFIYASSAATYGDGEA---GFREGRE-LERPLNVYGYSKF 143 (314)
T ss_pred EEEECccccCccccchHHHHHHHHHHHHHHHHHHHHhCC-cEEEEccHHhcCCCCC---CcccccC-cCCCCCHHHHHHH
Confidence 99999997 334457788899999999999999999987 8999999999976432 4455543 3468889999999
Q ss_pred HHHHHHHHhcC--CCCceEEEEecCccccCCCC------CchHHHHHHhcCCCceEEe------cCCCcccccccHHHHH
Q 010005 166 QAEALVLFANN--IDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFII------GSGENMSDFTYVENVA 231 (520)
Q Consensus 166 ~~E~~~~~~~~--~~gi~~~ilRp~~vyGp~~~------~~~~~l~~~~~~g~~~~i~------g~g~~~~~~i~v~Dva 231 (520)
.+|++++.+.. ..+++++++||+.+|||++. .++..++..+..++++.++ ++|++.++|+|++|++
T Consensus 144 ~~e~~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a 223 (314)
T TIGR02197 144 LFDQYVRRRVLPEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFVYVKDVV 223 (314)
T ss_pred HHHHHHHHHhHhhccCCceEEEEEeeccCCCCCCCCCcccHHHHHHHHHhcCCCeEEecCccccCCCCceeeeEEHHHHH
Confidence 99999987532 24679999999999999853 3456677777777766654 4678889999999999
Q ss_pred HHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCC
Q 010005 232 HAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSL 311 (520)
Q Consensus 232 ~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (520)
+++..+++ . ..+++||++++++++++|+++.+.+.+|.+......|.+. .+
T Consensus 224 ~~i~~~~~------~-~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~----------------------~~ 274 (314)
T TIGR02197 224 DVNLWLLE------N-GVSGIFNLGTGRARSFNDLADAVFKALGKDEKIEYIPMPE----------------------AL 274 (314)
T ss_pred HHHHHHHh------c-ccCceEEcCCCCCccHHHHHHHHHHHhCCCCcceeccCcc----------------------cc
Confidence 99999998 2 3457999999999999999999999999764222222100 00
Q ss_pred chHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 010005 312 SACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFS 355 (520)
Q Consensus 312 ~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~ 355 (520)
..........|++|+++.+||+|+++++|+++++++|+.
T Consensus 275 -----~~~~~~~~~~~~~k~~~~l~~~p~~~l~~~l~~~~~~~~ 313 (314)
T TIGR02197 275 -----RGKYQYFTQADITKLRAAGYYGPFTTLEEGVKDYVQWLL 313 (314)
T ss_pred -----ccccccccccchHHHHHhcCCCCcccHHHHHHHHHHHHh
Confidence 000011345799999999999999999999999999985
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=323.31 Aligned_cols=306 Identities=18% Similarity=0.222 Sum_probs=217.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-C-CCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-L-LPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~-l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
...|+||||||+||||++++++|+++| ++|+++++ +..+. . ........+++++.+|++|.+++.++++
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G-~~V~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRG-YTVHATLR--------DPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVK 78 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeC--------ChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHc
Confidence 346899999999999999999999999 69998543 22110 0 0011112468899999999999999999
Q ss_pred CCCEEEEcccCCC-----CCcchhhH-----HhhhHHHHHHHHHHHHHCC-CCEEEEeecccccccCCCC---CCCCCCC
Q 010005 84 GASTVFYVDATDL-----NTDDFYNC-----YMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHD---IHNGDET 149 (520)
Q Consensus 84 ~~D~Vih~aa~~~-----~~~~~~~~-----~~~Nv~gt~~ll~aa~~~g-vkr~V~~SS~~vyg~~~~~---~~~~~E~ 149 (520)
++|+|||+|+... ...++... ++.|+.|+.+++++|++.+ ++||||+||.++||..... ..+++|+
T Consensus 79 ~~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~ 158 (353)
T PLN02896 79 GCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDET 158 (353)
T ss_pred CCCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcc
Confidence 9999999999722 12344444 3445699999999999885 8999999999999853221 1346665
Q ss_pred ccCC-------CCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhc---CCCceE--EecC
Q 010005 150 LTCC-------WKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAK---PGWTKF--IIGS 217 (520)
Q Consensus 150 ~~~~-------~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~---~g~~~~--i~g~ 217 (520)
.+.| ..|.++|+.||.++|+++..+++++|++++++||+++|||+....++.++..+. .|.... ..+.
T Consensus 159 ~~~p~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 238 (353)
T PLN02896 159 CQTPIDHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPSVPSSIQVLLSPITGDSKLFSILSA 238 (353)
T ss_pred cCCcHHHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCCCCCchHHHHHHHhcCCccccccccc
Confidence 3222 235568999999999999999988899999999999999987543343333222 333211 1111
Q ss_pred ---CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHH
Q 010005 218 ---GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILL 294 (520)
Q Consensus 218 ---g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~ 294 (520)
....++|+||+|+|++++.++++ ...++.|++ ++++++++|+++.+.+.++.....+...
T Consensus 239 ~~~~~~~~dfi~v~Dva~a~~~~l~~------~~~~~~~~~-~~~~~s~~el~~~i~~~~~~~~~~~~~~---------- 301 (353)
T PLN02896 239 VNSRMGSIALVHIEDICDAHIFLMEQ------TKAEGRYIC-CVDSYDMSELINHLSKEYPCSNIQVRLD---------- 301 (353)
T ss_pred cccccCceeEEeHHHHHHHHHHHHhC------CCcCccEEe-cCCCCCHHHHHHHHHHhCCCCCcccccc----------
Confidence 11246999999999999999882 223447764 5678999999999999987432111110
Q ss_pred HHHHHHHhcccccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 295 VKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
+ ..+ . ......|.+|+++ |||+|+++++++|+++++||++...
T Consensus 302 --------~----~~~----~-----~~~~~~~~~~~~~-lGw~p~~~l~~~i~~~~~~~~~~~~ 344 (353)
T PLN02896 302 --------E----EKR----G-----SIPSEISSKKLRD-LGFEYKYGIEEIIDQTIDCCVDHGF 344 (353)
T ss_pred --------c----ccc----C-----ccccccCHHHHHH-cCCCccCCHHHHHHHHHHHHHHCCC
Confidence 0 000 0 0012358888875 9999999999999999999998654
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=318.40 Aligned_cols=298 Identities=18% Similarity=0.168 Sum_probs=221.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCC----CCCCCcEEEEecCCCHHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDS----LSSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~----~~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
.+++||||||+||||++++++|+++| ++|++ +.|+.... ..... ....+++++.+|++|.+.+.++
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~--------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 74 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRG-YTVKA--------TVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQA 74 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEE--------EECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHH
Confidence 36899999999999999999999999 58987 34433210 00000 0124688999999999999999
Q ss_pred HcCCCEEEEcccCC-CCCcch-hhHHhhhHHHHHHHHHHHHHC-CCCEEEEeecccccccCCC---CCCCCCCCccCCC-
Q 010005 82 LEGASTVFYVDATD-LNTDDF-YNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGSH---DIHNGDETLTCCW- 154 (520)
Q Consensus 82 l~~~D~Vih~aa~~-~~~~~~-~~~~~~Nv~gt~~ll~aa~~~-gvkr~V~~SS~~vyg~~~~---~~~~~~E~~~~~~- 154 (520)
++++|+|||+|+.. ....++ ...+++|+.|+.+++++|++. +++||||+||.++|+.+.. .....+|+.+..+
T Consensus 75 ~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~ 154 (322)
T PLN02986 75 IEGCDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPS 154 (322)
T ss_pred HhCCCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChH
Confidence 99999999999972 222233 357899999999999999986 7999999999987642221 1234677664322
Q ss_pred ---CCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCC---chHHHHHHhcCCCceEEecCCCcccccccHH
Q 010005 155 ---KFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ---LVPLLVNLAKPGWTKFIIGSGENMSDFTYVE 228 (520)
Q Consensus 155 ---~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~---~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~ 228 (520)
.+.+.|+.||..+|++++.+.+++|++++++||+++|||+... ....++..+..|++. . +.+.++|+||+
T Consensus 155 ~~~~~~~~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~--~--~~~~~~~v~v~ 230 (322)
T PLN02986 155 LCRETKNWYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQPTLNFSVELIVDFINGKNL--F--NNRFYRFVDVR 230 (322)
T ss_pred HhhccccchHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCCCCCCccHHHHHHHHcCCCC--C--CCcCcceeEHH
Confidence 3568899999999999999988889999999999999997542 234445555556542 2 35678999999
Q ss_pred HHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccC
Q 010005 229 NVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYN 308 (520)
Q Consensus 229 Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~ 308 (520)
|+|++++.+++ .+. .++.||+++ +++++.|+++.+.+.++.. .+|..
T Consensus 231 Dva~a~~~al~-----~~~-~~~~yni~~-~~~s~~e~~~~i~~~~~~~----~~~~~---------------------- 277 (322)
T PLN02986 231 DVALAHIKALE-----TPS-ANGRYIIDG-PIMSVNDIIDILRELFPDL----CIADT---------------------- 277 (322)
T ss_pred HHHHHHHHHhc-----Ccc-cCCcEEEec-CCCCHHHHHHHHHHHCCCC----CCCCC----------------------
Confidence 99999999998 232 345899964 6899999999999998631 22200
Q ss_pred CCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhh
Q 010005 309 HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (520)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~ 357 (520)
.+ +... ......+|.+|+++ |||+|+ +++|+++++++|+.+.
T Consensus 278 ~~---~~~~--~~~~~~~d~~~~~~-lg~~~~-~l~e~~~~~~~~~~~~ 319 (322)
T PLN02986 278 NE---ESEM--NEMICKVCVEKVKN-LGVEFT-PMKSSLRDTILSLKEK 319 (322)
T ss_pred Cc---cccc--cccCCccCHHHHHH-cCCccc-CHHHHHHHHHHHHHHc
Confidence 00 0000 00112479999876 999997 9999999999999874
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=303.26 Aligned_cols=302 Identities=23% Similarity=0.219 Sum_probs=225.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC----CCCCC-CCCCCcEEEEecCCCHHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS----LLPDS-LSSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~----~l~~~-~~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
++|+|+||||+||||+|+++.|+++| |.|++ ..|++... .+.+. ....+...+.+||.|.+++.++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG-Y~V~g--------tVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~a 75 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG-YTVRG--------TVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKA 75 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC-CEEEE--------EEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHH
Confidence 67899999999999999999999999 69999 78876631 12111 1234689999999999999999
Q ss_pred HcCCCEEEEcccC-CC-CCcchhhHHhhhHHHHHHHHHHHHHCC-CCEEEEeecccccccC---CCCCCCCCCCccCCCC
Q 010005 82 LEGASTVFYVDAT-DL-NTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDG---SHDIHNGDETLTCCWK 155 (520)
Q Consensus 82 l~~~D~Vih~aa~-~~-~~~~~~~~~~~Nv~gt~~ll~aa~~~g-vkr~V~~SS~~vyg~~---~~~~~~~~E~~~~~~~ 155 (520)
++|||.|||.|.+ .. ...+..+..+++++||.|++++|++.+ |||+||+||+++.... ..+....||+.+.+..
T Consensus 76 i~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~ 155 (327)
T KOG1502|consen 76 IDGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLD 155 (327)
T ss_pred HhCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHH
Confidence 9999999999999 22 222344899999999999999999998 9999999999998644 3334467887764322
Q ss_pred ----CCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCch---HHHHHHhcCCCceEEecCCCcccccccHH
Q 010005 156 ----FQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLV---PLLVNLAKPGWTKFIIGSGENMSDFTYVE 228 (520)
Q Consensus 156 ----p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~---~~l~~~~~~g~~~~i~g~g~~~~~~i~v~ 228 (520)
....|..||..+|+.+.+++++.|++.+.+-|+.|+||.....+ ....-...+|..-.. .+.+..|+||+
T Consensus 156 ~~~~~~~~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~l~~s~~~~l~~i~G~~~~~---~n~~~~~VdVr 232 (327)
T KOG1502|consen 156 FCRCKKLWYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPSLNSSLNALLKLIKGLAETY---PNFWLAFVDVR 232 (327)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhCCccEEEecCCceECCCcccccchhHHHHHHHHhcccccC---CCCceeeEeHH
Confidence 23679999999999999999999999999999999999875422 223333445532112 12344599999
Q ss_pred HHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccC
Q 010005 229 NVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYN 308 (520)
Q Consensus 229 Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~ 308 (520)
|+|.|++.++| .+... +.|.+.+ +..++.|+++.+.+.++.- ++|..- ...
T Consensus 233 DVA~AHv~a~E-----~~~a~-GRyic~~-~~~~~~ei~~~l~~~~P~~----~ip~~~------------------~~~ 283 (327)
T KOG1502|consen 233 DVALAHVLALE-----KPSAK-GRYICVG-EVVSIKEIADILRELFPDY----PIPKKN------------------AEE 283 (327)
T ss_pred HHHHHHHHHHc-----CcccC-ceEEEec-CcccHHHHHHHHHHhCCCC----CCCCCC------------------Ccc
Confidence 99999999999 34444 4666666 5566999999999988543 233110 000
Q ss_pred CCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhh
Q 010005 309 HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (520)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~ 358 (520)
.. .......++++|+++..|++.. +++|++.++++++++..
T Consensus 284 ~~--------~~~~~~~~~~~k~k~lg~~~~~-~l~e~~~dt~~sl~~~~ 324 (327)
T KOG1502|consen 284 HE--------GFLTSFKVSSEKLKSLGGFKFR-PLEETLSDTVESLREKG 324 (327)
T ss_pred cc--------ccccccccccHHHHhcccceec-ChHHHHHHHHHHHHHhc
Confidence 00 0001235799999995458875 99999999999998854
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=313.89 Aligned_cols=315 Identities=18% Similarity=0.234 Sum_probs=229.1
Q ss_pred CCCCeEEEE----cCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCC--CCCCCCCCcEEEEecCCCHHHHH
Q 010005 6 AIPRTCVVL----NGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLL--PDSLSSGRAEYHQVDVRDISQIK 79 (520)
Q Consensus 6 ~~~~~ILVt----GatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l--~~~~~~~~v~~~~~Dl~d~~~l~ 79 (520)
.++|+|||| ||+||||+++++.|+++| ++|+++++.... ......... ...+...+++++.+|+.| +.
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R~~~~--~~~~~~~~~~~~~~l~~~~v~~v~~D~~d---~~ 123 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTRGKEP--SQKMKKEPFSRFSELSSAGVKTVWGDPAD---VK 123 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEecCCcc--hhhhccCchhhhhHhhhcCceEEEecHHH---HH
Confidence 356899999 999999999999999999 599995543210 000000000 001122468999999987 34
Q ss_pred HHH--cCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCC
Q 010005 80 KVL--EGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQ 157 (520)
Q Consensus 80 ~~l--~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~ 157 (520)
+++ .++|+|||+++. +..++.+++++|++.|++||||+||.++||.... .+..|+. +..|.
T Consensus 124 ~~~~~~~~d~Vi~~~~~-------------~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~~~~--~p~~E~~--~~~p~ 186 (378)
T PLN00016 124 SKVAGAGFDVVYDNNGK-------------DLDEVEPVADWAKSPGLKQFLFCSSAGVYKKSDE--PPHVEGD--AVKPK 186 (378)
T ss_pred hhhccCCccEEEeCCCC-------------CHHHHHHHHHHHHHcCCCEEEEEccHhhcCCCCC--CCCCCCC--cCCCc
Confidence 444 479999999752 2457889999999999999999999999975432 2455654 23333
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC-CchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHH
Q 010005 158 DLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236 (520)
Q Consensus 158 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~-~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ 236 (520)
+ +|..+|++++. .+++++++||+++|||++. .....++..+..++++.++++|++.++|+|++|+|++++.
T Consensus 187 ~----sK~~~E~~l~~----~~l~~~ilRp~~vyG~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~~~~i~v~Dva~ai~~ 258 (378)
T PLN00016 187 A----GHLEVEAYLQK----LGVNWTSFRPQYIYGPGNNKDCEEWFFDRLVRGRPVPIPGSGIQLTQLGHVKDLASMFAL 258 (378)
T ss_pred c----hHHHHHHHHHH----cCCCeEEEeceeEECCCCCCchHHHHHHHHHcCCceeecCCCCeeeceecHHHHHHHHHH
Confidence 3 89999998865 5899999999999999865 3456677778888888888999999999999999999999
Q ss_pred HHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHH
Q 010005 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYI 316 (520)
Q Consensus 237 ~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (520)
+++ .+...+++||+++++.++++|+++.+.+.+|.+...+..+.... ++ +.. ...++.
T Consensus 259 ~l~-----~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~-------~~-----~~~--~~~p~~--- 316 (378)
T PLN00016 259 VVG-----NPKAAGQIFNIVSDRAVTFDGMAKACAKAAGFPEEIVHYDPKAV-------GF-----GAK--KAFPFR--- 316 (378)
T ss_pred Hhc-----CccccCCEEEecCCCccCHHHHHHHHHHHhCCCCceeecCcccc-------Cc-----ccc--cccccc---
Confidence 988 34456789999999999999999999999998754333332110 00 000 000111
Q ss_pred HHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhccccccccCCCcchhhHhhhC
Q 010005 317 VQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSSLAYSRDFNEQSKVEKLLG 380 (520)
Q Consensus 317 ~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg 380 (520)
......|++|++++|||+|+++++|+|+++++||+.+..... .-+|.-++++-..++
T Consensus 317 ----~~~~~~d~~ka~~~LGw~p~~~l~egl~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 373 (378)
T PLN00016 317 ----DQHFFASPRKAKEELGWTPKFDLVEDLKDRYELYFGRGRDRK---EADFETDDKILEKLG 373 (378)
T ss_pred ----ccccccCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCCCcc---ccCccccHHHHHHhc
Confidence 113456999999999999999999999999999998765432 235666666555543
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=297.30 Aligned_cols=279 Identities=19% Similarity=0.213 Sum_probs=219.1
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC--CE
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA--ST 87 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~--D~ 87 (520)
|||||||+||||++++++|+++| ++|++ +.|. .+|+.|.+++.++++++ |+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g-~~v~~--------~~r~------------------~~d~~~~~~~~~~~~~~~~d~ 53 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEG-RVVVA--------LTSS------------------QLDLTDPEALERLLRAIRPDA 53 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcC-CEEEE--------eCCc------------------ccCCCCHHHHHHHHHhCCCCE
Confidence 58999999999999999999999 59998 4442 47999999999999875 99
Q ss_pred EEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHH
Q 010005 88 VFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (520)
Q Consensus 88 Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK 164 (520)
|||+|+... ...++...+++|+.++.+++++|++.++ ||||+||.++|+.. ...+.+|++ +..|.+.|+.+|
T Consensus 54 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~v~~Ss~~vy~~~--~~~~~~E~~--~~~~~~~Y~~~K 128 (287)
T TIGR01214 54 VVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGA-RLVHISTDYVFDGE--GKRPYREDD--ATNPLNVYGQSK 128 (287)
T ss_pred EEECCccccccccccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeeeeecCC--CCCCCCCCC--CCCCcchhhHHH
Confidence 999999732 2345677899999999999999999986 89999999999643 234678877 457888999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEecCccccCCC-CCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhc
Q 010005 165 AQAEALVLFANNIDGLLTCALRPSNVFGPGD-TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (520)
Q Consensus 165 ~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~-~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~ 243 (520)
..+|++++.+ +++++++||+.+|||++ +.++..++..+..++++.+.+ +++++++|++|+|+++..+++
T Consensus 129 ~~~E~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~v~Dva~a~~~~~~---- 198 (287)
T TIGR01214 129 LAGEQAIRAA----GPNALIVRTSWLYGGGGGRNFVRTMLRLAGRGEELRVVD--DQIGSPTYAKDLARVIAALLQ---- 198 (287)
T ss_pred HHHHHHHHHh----CCCeEEEEeeecccCCCCCCHHHHHHHHhhcCCCceEec--CCCcCCcCHHHHHHHHHHHHh----
Confidence 9999999875 57899999999999986 456677777777777766655 467899999999999999998
Q ss_pred ccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccc
Q 010005 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRT 323 (520)
Q Consensus 244 ~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (520)
.+...+++||+++++++++.|+++.+.+.+|.+...+..|.. .... ..... .+... ...
T Consensus 199 -~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~--~~~~------~~~~~-----~~~~~-------~~~ 257 (287)
T TIGR01214 199 -RLARARGVYHLANSGQCSWYEFAQAIFEEAGADGLLLHPQEV--KPIS------SKEYP-----RPARR-------PAY 257 (287)
T ss_pred -hccCCCCeEEEECCCCcCHHHHHHHHHHHhCcccccccCcee--Eeec------HHHcC-----CCCCC-------CCc
Confidence 233457899999999999999999999999987543332210 0000 00000 00000 024
Q ss_pred eEechHHHHHhcCCCCCCCHHHHHHHHHH
Q 010005 324 RTFDCIAAQKHIGYSPVVSLEEGVSSTIQ 352 (520)
Q Consensus 324 ~~~d~~ka~~~LG~~p~~sleegi~~~~~ 352 (520)
..+|++|+++.|||++ .+++|+++++++
T Consensus 258 ~~~d~~~~~~~lg~~~-~~~~~~l~~~~~ 285 (287)
T TIGR01214 258 SVLDNTKLVKTLGTPL-PHWREALRAYLQ 285 (287)
T ss_pred cccchHHHHHHcCCCC-ccHHHHHHHHHh
Confidence 5789999999999955 599999998875
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=300.86 Aligned_cols=303 Identities=20% Similarity=0.203 Sum_probs=231.1
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--CCCE
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAST 87 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~~D~ 87 (520)
+||||||+|+||+++++.|+++| ++|+++|+.. +... ..+.......+++.+.+|+.|.+++.++++ ++|+
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g-~~V~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~ 73 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG-HEVVVLDNLS-----NGSP-EALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDA 73 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC-CeEEEEeCCC-----ccch-hhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcE
Confidence 68999999999999999999999 5888865321 1111 011111111257788999999999999987 6999
Q ss_pred EEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHH
Q 010005 88 VFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (520)
Q Consensus 88 Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK 164 (520)
|||+|+.. ....++...++.|+.++.+++++|.+.+++++|++||..+||.... .+.+|+. +..|.+.|+.+|
T Consensus 74 vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss~~~~g~~~~--~~~~e~~--~~~~~~~y~~sK 149 (328)
T TIGR01179 74 VIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSSAAVYGEPSS--IPISEDS--PLGPINPYGRSK 149 (328)
T ss_pred EEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecchhhcCCCCC--CCccccC--CCCCCCchHHHH
Confidence 99999972 2334566788999999999999999999999999999999974322 3567776 456889999999
Q ss_pred HHHHHHHHHhcCC-CCceEEEEecCccccCCCC-----------CchHHHHHHhc-CCCceEEe------cCCCcccccc
Q 010005 165 AQAEALVLFANNI-DGLLTCALRPSNVFGPGDT-----------QLVPLLVNLAK-PGWTKFII------GSGENMSDFT 225 (520)
Q Consensus 165 ~~~E~~~~~~~~~-~gi~~~ilRp~~vyGp~~~-----------~~~~~l~~~~~-~g~~~~i~------g~g~~~~~~i 225 (520)
..+|.++..++.+ .+++++++||+.+|||... .+++.+..... ...++..+ ++|++.++|+
T Consensus 150 ~~~e~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v 229 (328)
T TIGR01179 150 LMSERILRDLSKADPGLSYVILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYI 229 (328)
T ss_pred HHHHHHHHHHHHhccCCCEEEEecCcccCCCCCCccccCCcccchHHHHHHHHHHhCCCCeEEeCCcccCCCCceEEeee
Confidence 9999999998776 7999999999999998532 23455554443 33333343 3567889999
Q ss_pred cHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhccc
Q 010005 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLR 305 (520)
Q Consensus 226 ~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~ 305 (520)
|++|+++++..+++... ....+++||+++++++|++|+++.+.+.+|.+.+....|..
T Consensus 230 ~~~D~a~~~~~~~~~~~---~~~~~~~~n~~~~~~~s~~ei~~~~~~~~g~~~~~~~~~~~------------------- 287 (328)
T TIGR01179 230 HVMDLADAHLAALEYLL---NGGESHVYNLGYGQGFSVLEVIEAFKKVSGVDFPVELAPRR------------------- 287 (328)
T ss_pred eHHHHHHHHHHHHhhhh---cCCCcceEEcCCCCcccHHHHHHHHHHHhCCCcceEeCCCC-------------------
Confidence 99999999999987421 22456899999999999999999999999986543222210
Q ss_pred ccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCC-HHHHHHHHHHHHHhh
Q 010005 306 TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVS-LEEGVSSTIQSFSHL 357 (520)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~s-leegi~~~~~~~~~~ 357 (520)
+ ... .....|++|++++|||+|+++ ++++++++++|++++
T Consensus 288 ----~-~~~-------~~~~~~~~~~~~~lg~~p~~~~l~~~~~~~~~~~~~~ 328 (328)
T TIGR01179 288 ----P-GDP-------ASLVADASKIRRELGWQPKYTDLEIIIKTAWRWESRN 328 (328)
T ss_pred ----C-ccc-------cchhcchHHHHHHhCCCCCcchHHHHHHHHHHHHhcC
Confidence 0 000 123468999999999999997 999999999999763
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=299.31 Aligned_cols=303 Identities=15% Similarity=0.141 Sum_probs=228.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCEE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~V 88 (520)
|+|+|||||||||++++++|+++| ++|++ +.|+..+. ..+...+++++.+|++|++++.++++++|+|
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g-~~V~~--------l~R~~~~~---~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~V 68 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG-YQVRC--------LVRNLRKA---SFLKEWGAELVYGDLSLPETLPPSFKGVTAI 68 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CeEEE--------EEcChHHh---hhHhhcCCEEEECCCCCHHHHHHHHCCCCEE
Confidence 589999999999999999999999 59999 45543311 1112347899999999999999999999999
Q ss_pred EEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHH
Q 010005 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAE 168 (520)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E 168 (520)
||+++.. ..++...+++|+.++.|++++|+++|++||||+||.++.. .+.++|..+|..+|
T Consensus 69 i~~~~~~--~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~~-----------------~~~~~~~~~K~~~e 129 (317)
T CHL00194 69 IDASTSR--PSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAEQ-----------------YPYIPLMKLKSDIE 129 (317)
T ss_pred EECCCCC--CCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccccccc-----------------cCCChHHHHHHHHH
Confidence 9998642 2345567889999999999999999999999999964320 12356899999999
Q ss_pred HHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccC
Q 010005 169 ALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSV 248 (520)
Q Consensus 169 ~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~ 248 (520)
++++. .+++++++||+.+|+.. +..+...+..++++.+ +++++.++|+|++|+|++++.+++ .+..
T Consensus 130 ~~l~~----~~l~~tilRp~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~i~v~Dva~~~~~~l~-----~~~~ 195 (317)
T CHL00194 130 QKLKK----SGIPYTIFRLAGFFQGL----ISQYAIPILEKQPIWI-TNESTPISYIDTQDAAKFCLKSLS-----LPET 195 (317)
T ss_pred HHHHH----cCCCeEEEeecHHhhhh----hhhhhhhhccCCceEe-cCCCCccCccCHHHHHHHHHHHhc-----Cccc
Confidence 98865 58999999999988642 1111222233455444 455677899999999999998887 3455
Q ss_pred CCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccceEech
Q 010005 249 AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDC 328 (520)
Q Consensus 249 ~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 328 (520)
.|++||+++++.+|++|+++.+.+.+|.+.....+|.+.......+.+.+..... ....+....+..+.....++.
T Consensus 196 ~~~~~ni~g~~~~s~~el~~~~~~~~g~~~~~~~vp~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~ 271 (317)
T CHL00194 196 KNKTFPLVGPKSWNSSEIISLCEQLSGQKAKISRVPLFLLKLLRQITGFFEWTWN----ISDRLAFVEILNTSNNFSSSM 271 (317)
T ss_pred cCcEEEecCCCccCHHHHHHHHHHHhCCCCeEEeCCHHHHHHHHHHHhhcccchh----hHHHHHHHHHHhcCCCcCCCH
Confidence 7899999999999999999999999999888888998888777666553311000 011111222233334455678
Q ss_pred HHHHHhcCCCCC--CCHHHHHHHHHHHHHhhhhc
Q 010005 329 IAAQKHIGYSPV--VSLEEGVSSTIQSFSHLARD 360 (520)
Q Consensus 329 ~ka~~~LG~~p~--~sleegi~~~~~~~~~~~~~ 360 (520)
+++.+.||+.|+ .+++++++++++-..++.++
T Consensus 272 ~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~ 305 (317)
T CHL00194 272 AELYKIFKIDPNELISLEDYFQEYFERILKRLKD 305 (317)
T ss_pred HHHHHHhCCChhhhhhHHHHHHHHHHHHHHHHHh
Confidence 899999999984 58999999988877765554
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=305.34 Aligned_cols=294 Identities=20% Similarity=0.161 Sum_probs=211.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC-------CCCCcEEEEecCCCHH
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL-------SSGRAEYHQVDVRDIS 76 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~-------~~~~v~~~~~Dl~d~~ 76 (520)
..++|+||||||+||||++++++|+++| ++|+++. |+... ..+.... ...+++++.+|++|.+
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G-~~V~~~~--------r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~ 120 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHG-YSVRIAV--------DTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPE 120 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEe--------CCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHH
Confidence 3567899999999999999999999999 5888733 32110 0000000 0125788999999999
Q ss_pred HHHHHHcCCCEEEEcccCCCCC---cchhhHHhhhHHHHHHHHHHHHHC-CCCEEEEeecc--cccccCCCCC--CCCCC
Q 010005 77 QIKKVLEGASTVFYVDATDLNT---DDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTA--DVVFDGSHDI--HNGDE 148 (520)
Q Consensus 77 ~l~~~l~~~D~Vih~aa~~~~~---~~~~~~~~~Nv~gt~~ll~aa~~~-gvkr~V~~SS~--~vyg~~~~~~--~~~~E 148 (520)
++.++++++|+|||+|+..... .......++|+.++.+++++|++. +++||||+||. .+||...... ..++|
T Consensus 121 ~l~~~i~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~~i~E 200 (367)
T PLN02686 121 SLHEAFDGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDE 200 (367)
T ss_pred HHHHHHHhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCcccCC
Confidence 9999999999999999973211 123456789999999999999987 79999999997 4776421111 23566
Q ss_pred CccC----CCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccccc
Q 010005 149 TLTC----CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (520)
Q Consensus 149 ~~~~----~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (520)
+.+. +..|.++|+.||..+|++++.+++++|++++++||+++|||++....+.....+..|. ..+.++|. ++|
T Consensus 201 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~~~~~~~~~~~~~g~-~~~~g~g~--~~~ 277 (367)
T PLN02686 201 ESWSDESFCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRRNSTATIAYLKGA-QEMLADGL--LAT 277 (367)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCCCCCChhHHHHhcCC-CccCCCCC--cCe
Confidence 5432 3456788999999999999999887899999999999999986422222122333444 34556554 579
Q ss_pred ccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcc
Q 010005 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGL 304 (520)
Q Consensus 225 i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~ 304 (520)
+||+|+|++++++++++. +...+++| ++++++++++|+++.+.+.+|.+...+..|..
T Consensus 278 v~V~Dva~A~~~al~~~~---~~~~~~~y-i~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~------------------ 335 (367)
T PLN02686 278 ADVERLAEAHVCVYEAMG---NKTAFGRY-ICFDHVVSREDEAEELARQIGLPINKIAGNSS------------------ 335 (367)
T ss_pred EEHHHHHHHHHHHHhccC---CCCCCCcE-EEeCCCccHHHHHHHHHHHcCCCCCcCCCchh------------------
Confidence 999999999999998321 22346678 88889999999999999999876443322200
Q ss_pred cccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHH
Q 010005 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLE 344 (520)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sle 344 (520)
.+ .. ...+..|++|++++|||+|+...+
T Consensus 336 ----~~-~d-------~~~~~~d~~kl~~~l~~~~~~~~~ 363 (367)
T PLN02686 336 ----SD-DT-------PARFELSNKKLSRLMSRTRRCCYD 363 (367)
T ss_pred ----hc-CC-------cccccccHHHHHHHHHHhhhcccc
Confidence 00 00 014567999999999999975443
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=295.24 Aligned_cols=273 Identities=18% Similarity=0.202 Sum_probs=211.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcC-CcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELG-KCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g-~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
++|+||||||+||||+++++.|+++| .++|+++|+.. .. ..+.......+++++.+|++|.+++.+++++
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~--------~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~ 74 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDE--------LKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRG 74 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCCh--------hHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhc
Confidence 46899999999999999999999986 24788855432 11 0011111224688999999999999999999
Q ss_pred CCEEEEcccC---CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHH
Q 010005 85 ASTVFYVDAT---DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (520)
Q Consensus 85 ~D~Vih~aa~---~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~ 161 (520)
+|+|||+||. .....++...+++|+.|+.+++++|++.++++||++||... ..|.++|+
T Consensus 75 iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~~~------------------~~p~~~Y~ 136 (324)
T TIGR03589 75 VDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDKA------------------ANPINLYG 136 (324)
T ss_pred CCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCC------------------CCCCCHHH
Confidence 9999999997 22345677899999999999999999999999999999632 24567899
Q ss_pred HHHHHHHHHHHHh---cCCCCceEEEEecCccccCCCCCchHHHHHHhcCCC-ceEEecCCCcccccccHHHHHHHHHHH
Q 010005 162 DLKAQAEALVLFA---NNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGW-TKFIIGSGENMSDFTYVENVAHAHVCA 237 (520)
Q Consensus 162 ~sK~~~E~~~~~~---~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~-~~~i~g~g~~~~~~i~v~Dva~ai~~~ 237 (520)
.+|+.+|++++.+ ..++|++++++||+++|||+. .+++.+...+..+. ++.+ +++++.++|+|++|++++++.+
T Consensus 137 ~sK~~~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~-~~i~~~~~~~~~~~~~~~i-~~~~~~r~~i~v~D~a~a~~~a 214 (324)
T TIGR03589 137 ATKLASDKLFVAANNISGSKGTRFSVVRYGNVVGSRG-SVVPFFKSLKEEGVTELPI-TDPRMTRFWITLEQGVNFVLKS 214 (324)
T ss_pred HHHHHHHHHHHHHHhhccccCcEEEEEeecceeCCCC-CcHHHHHHHHHhCCCCeee-CCCCceEeeEEHHHHHHHHHHH
Confidence 9999999998764 345799999999999999975 57788888777776 4444 5788899999999999999999
Q ss_pred HHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHH
Q 010005 238 AEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIV 317 (520)
Q Consensus 238 ~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (520)
++. ...+++| ++++..+++.|+++.+.+..+.+. .+ ..+ -...
T Consensus 215 l~~------~~~~~~~-~~~~~~~sv~el~~~i~~~~~~~~----~~-----------------------~~~-g~~~-- 257 (324)
T TIGR03589 215 LER------MLGGEIF-VPKIPSMKITDLAEAMAPECPHKI----VG-----------------------IRP-GEKL-- 257 (324)
T ss_pred Hhh------CCCCCEE-ccCCCcEEHHHHHHHHHhhCCeeE----eC-----------------------CCC-Cchh--
Confidence 882 2346777 566678999999999998654321 11 000 0000
Q ss_pred HHhccceEechHHHHHhcCCCCCCCHHHHHH
Q 010005 318 QLASRTRTFDCIAAQKHIGYSPVVSLEEGVS 348 (520)
Q Consensus 318 ~~~~~~~~~d~~ka~~~LG~~p~~sleegi~ 348 (520)
+....|.+|+++.|||+|+++++++++
T Consensus 258 ----~~~~~~~~~~~~~lg~~~~~~l~~~~~ 284 (324)
T TIGR03589 258 ----HEVMITEDDARHTYELGDYYAILPSIS 284 (324)
T ss_pred ----HhhhcChhhhhhhcCCCCeEEEccccc
Confidence 013469999999999999999999985
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=291.45 Aligned_cols=279 Identities=22% Similarity=0.283 Sum_probs=205.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--CCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~~D 86 (520)
||||||||+|+||+++++.|.++| ++|++ ..|. ..|+.|.+++.+.++ ++|
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~-~~v~~--------~~r~------------------~~dl~d~~~~~~~~~~~~pd 53 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERG-YEVIA--------TSRS------------------DLDLTDPEAVAKLLEAFKPD 53 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTS-EEEEE--------ESTT------------------CS-TTSHHHHHHHHHHH--S
T ss_pred CEEEEECCCCHHHHHHHHHHhhCC-CEEEE--------eCch------------------hcCCCCHHHHHHHHHHhCCC
Confidence 799999999999999999999998 68888 3333 569999999999987 489
Q ss_pred EEEEcccC---CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHH
Q 010005 87 TVFYVDAT---DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (520)
Q Consensus 87 ~Vih~aa~---~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~s 163 (520)
+||||||. ..++.+++..+++|+.++.+++++|++.|+ ++||+||..||... ...+.+|++ +.+|.+.||.+
T Consensus 54 ~Vin~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~-~li~~STd~VFdG~--~~~~y~E~d--~~~P~~~YG~~ 128 (286)
T PF04321_consen 54 VVINCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERGA-RLIHISTDYVFDGD--KGGPYTEDD--PPNPLNVYGRS 128 (286)
T ss_dssp EEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT--EEEEEEEGGGS-SS--TSSSB-TTS------SSHHHHH
T ss_pred eEeccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCC-cEEEeeccEEEcCC--cccccccCC--CCCCCCHHHHH
Confidence 99999998 346678999999999999999999999998 99999999999433 233678887 66899999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhc
Q 010005 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (520)
Q Consensus 164 K~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~ 243 (520)
|.++|+.+++.+. +.+|+|++.+||+...+++..+.+.+..++.+.+.. ++.++.+|++|+|+++..+++....
T Consensus 129 K~~~E~~v~~~~~----~~~IlR~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~--d~~~~p~~~~dlA~~i~~l~~~~~~ 202 (286)
T PF04321_consen 129 KLEGEQAVRAACP----NALILRTSWVYGPSGRNFLRWLLRRLRQGEPIKLFD--DQYRSPTYVDDLARVILELIEKNLS 202 (286)
T ss_dssp HHHHHHHHHHH-S----SEEEEEE-SEESSSSSSHHHHHHHHHHCTSEEEEES--SCEE--EEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC----CEEEEecceecccCCCchhhhHHHHHhcCCeeEeeC--CceeCCEEHHHHHHHHHHHHHhccc
Confidence 9999999998654 689999999999977789999999999999877765 5788999999999999999985432
Q ss_pred ccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcc-cCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhcc
Q 010005 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFI-KLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASR 322 (520)
Q Consensus 244 ~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (520)
+ ....++||+++++.+|..|+++.+++.+|.+...+ +++.. ........ ..
T Consensus 203 ~--~~~~Giyh~~~~~~~S~~e~~~~i~~~~~~~~~~i~~~~~~-------------------~~~~~~~r-------p~ 254 (286)
T PF04321_consen 203 G--ASPWGIYHLSGPERVSRYEFAEAIAKILGLDPELIKPVSSS-------------------EFPRAAPR-------PR 254 (286)
T ss_dssp ---GGG-EEEE---BS-EEHHHHHHHHHHHHTHCTTEEEEESST-------------------TSTTSSGS--------S
T ss_pred c--cccceeEEEecCcccCHHHHHHHHHHHhCCCCceEEecccc-------------------cCCCCCCC-------CC
Confidence 1 22356999999999999999999999999886332 22100 00001111 13
Q ss_pred ceEechHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 010005 323 TRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354 (520)
Q Consensus 323 ~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~ 354 (520)
+..+|++|+++.+|++|. +++++++++++.|
T Consensus 255 ~~~L~~~kl~~~~g~~~~-~~~~~l~~~~~~~ 285 (286)
T PF04321_consen 255 NTSLDCRKLKNLLGIKPP-PWREGLEELVKQY 285 (286)
T ss_dssp BE-B--HHHHHCTTS----BHHHHHHHHHHHH
T ss_pred cccccHHHHHHccCCCCc-CHHHHHHHHHHHh
Confidence 678899999999999996 9999999998865
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=317.31 Aligned_cols=329 Identities=19% Similarity=0.106 Sum_probs=241.5
Q ss_pred CeEEEEcCCChhHHHHHHHHH--hcCCcEEEEecCCcccccCCCCCCCCCCC---CCCCCCcEEEEecCCCH------HH
Q 010005 9 RTCVVLNGRGFVGRSLVLRLL--ELGKCIVRVTDSTQSLQLDPSESNSLLPD---SLSSGRAEYHQVDVRDI------SQ 77 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~--~~g~~~V~~~D~~~~~~l~r~~~~~~l~~---~~~~~~v~~~~~Dl~d~------~~ 77 (520)
|+||||||+||||+++++.|+ ++| ++|+++++ +.....+.. .....+++++.+|++|+ +.
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g-~~V~~l~R--------~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~ 71 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRRE-ATVHVLVR--------RQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEAD 71 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCC-CEEEEEEC--------cchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHH
Confidence 589999999999999999999 478 59999544 322111110 01124689999999984 45
Q ss_pred HHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCc-cCCCCC
Q 010005 78 IKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETL-TCCWKF 156 (520)
Q Consensus 78 l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~-~~~~~p 156 (520)
+.++ +++|+|||+||......++....++|+.++.+++++|++.++++|||+||.++||.... +.+|+. +.+..+
T Consensus 72 ~~~l-~~~D~Vih~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~SS~~v~g~~~~---~~~e~~~~~~~~~ 147 (657)
T PRK07201 72 IAEL-GDIDHVVHLAAIYDLTADEEAQRAANVDGTRNVVELAERLQAATFHHVSSIAVAGDYEG---VFREDDFDEGQGL 147 (657)
T ss_pred HHHh-cCCCEEEECceeecCCCCHHHHHHHHhHHHHHHHHHHHhcCCCeEEEEeccccccCccC---ccccccchhhcCC
Confidence 5555 89999999999844445667788999999999999999999999999999999975432 334433 223455
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCc---------hHHHHHHhc-CCCceEEecCCCccccccc
Q 010005 157 QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQL---------VPLLVNLAK-PGWTKFIIGSGENMSDFTY 226 (520)
Q Consensus 157 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~---------~~~l~~~~~-~g~~~~i~g~g~~~~~~i~ 226 (520)
.++|+.+|.++|+++++. .|++++++||+.+|||+.... +..++.... ........+++.+..+++|
T Consensus 148 ~~~Y~~sK~~~E~~~~~~---~g~~~~ilRp~~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 224 (657)
T PRK07201 148 PTPYHRTKFEAEKLVREE---CGLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVLAKLAKLPSWLPMVGPDGGRTNIVP 224 (657)
T ss_pred CCchHHHHHHHHHHHHHc---CCCcEEEEcCCeeeecCCCCccccCCcHHHHHHHHHHhccCCcccccccCCCCeeeeee
Confidence 678999999999999753 589999999999999865321 111222221 1222345566777889999
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCC---CcccCChHHHHHHHHHHHHHHHHhc
Q 010005 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQR---PFIKLPTGVVWYIILLVKWIHEKLG 303 (520)
Q Consensus 227 v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~---~~v~~p~~~~~~~~~~~~~~~~~~~ 303 (520)
++|+++++..+++ .+...|++||++++++++++|+++.+.+.+|.+. +...+|.++......+.........
T Consensus 225 vddva~ai~~~~~-----~~~~~g~~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 299 (657)
T PRK07201 225 VDYVADALDHLMH-----KDGRDGQTFHLTDPKPQRVGDIYNAFARAAGAPPDARLFGFLPGFVAAPLLAALGPVRRLRN 299 (657)
T ss_pred HHHHHHHHHHHhc-----CcCCCCCEEEeCCCCCCcHHHHHHHHHHHhCCCccccccccCChHHHHHHhhhcchhhHHHH
Confidence 9999999998887 3456688999999999999999999999999987 6778898887766653221111100
Q ss_pred ccccCCCCchHHHHHHhccceEechHHHHHhc---CCCCCCCHHHHHHHHHHHHHhhhhc
Q 010005 304 LRTYNHSLSACYIVQLASRTRTFDCIAAQKHI---GYSPVVSLEEGVSSTIQSFSHLARD 360 (520)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~L---G~~p~~sleegi~~~~~~~~~~~~~ 360 (520)
. ........+..+..+.....+|++|+++.| |+.+. ++++.+.+.++||.++...
T Consensus 300 ~-~~~~~~~~~~~l~~~~~~~~f~~~~~~~~L~~~~~~~p-~~~~~~~~~~~~~~~~~~~ 357 (657)
T PRK07201 300 A-VATQLGIPPEVLDFVNYPTTFDSRETRAALKGSGIEVP-RLASYAPRLWDYWERHLDP 357 (657)
T ss_pred H-HHHhcCCCHHHHHhccCCCeeccHHHHHHhccCCcCCC-ChHHHHHHHHHHHHhcCCh
Confidence 0 001123346677788888899999999998 55554 7889999999988776543
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=279.84 Aligned_cols=226 Identities=31% Similarity=0.383 Sum_probs=193.1
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC--CEE
Q 010005 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA--STV 88 (520)
Q Consensus 11 ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~--D~V 88 (520)
||||||+||||+++++.|+++|+ .|+. +.|+......... ..+++++.+|+.|.+.+.+++++. |+|
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~-~v~~--------~~~~~~~~~~~~~--~~~~~~~~~dl~~~~~~~~~~~~~~~d~v 69 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH-EVIV--------LSRSSNSESFEEK--KLNVEFVIGDLTDKEQLEKLLEKANIDVV 69 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT-EEEE--------EESCSTGGHHHHH--HTTEEEEESETTSHHHHHHHHHHHTESEE
T ss_pred EEEEccCCHHHHHHHHHHHHcCC-cccc--------ccccccccccccc--cceEEEEEeeccccccccccccccCceEE
Confidence 79999999999999999999994 7776 4444432111110 117899999999999999999865 999
Q ss_pred EEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHH
Q 010005 89 FYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKA 165 (520)
Q Consensus 89 ih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~ 165 (520)
||+|+.. ....++...++.|+.++.+++++|++.+++|+||+||..+|+.. ...+.+|+.+ ..|.++|+.+|.
T Consensus 70 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS~~~y~~~--~~~~~~e~~~--~~~~~~Y~~~K~ 145 (236)
T PF01370_consen 70 IHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSSASVYGDP--DGEPIDEDSP--INPLSPYGASKR 145 (236)
T ss_dssp EEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGGGTSS--SSSSBETTSG--CCHSSHHHHHHH
T ss_pred EEeecccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccc--cccccccccccc
Confidence 9999973 12256788999999999999999999999999999999999876 3346788874 489999999999
Q ss_pred HHHHHHHHhcCCCCceEEEEecCccccCC-----CCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHh
Q 010005 166 QAEALVLFANNIDGLLTCALRPSNVFGPG-----DTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEA 240 (520)
Q Consensus 166 ~~E~~~~~~~~~~gi~~~ilRp~~vyGp~-----~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~ 240 (520)
.+|++++.+.++++++++++||+++|||+ ...+++.++..+..|+++.++++|++.++|+|++|+|++++.+++.
T Consensus 146 ~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 225 (236)
T PF01370_consen 146 AAEELLRDYAKKYGLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQALKGKPIKIPGDGSQVRDFIHVDDLAEAIVAALEN 225 (236)
T ss_dssp HHHHHHHHHHHHHTSEEEEEEESEEESTTSSSSSTSSHHHHHHHHHHTTSSEEEESTSSCEEEEEEHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccchhhHHhhcCCcccccCCCCCccceEEHHHHHHHHHHHHhC
Confidence 99999999998889999999999999999 2368889999999999989999999999999999999999999993
Q ss_pred hhcccccCCCceEEEe
Q 010005 241 LDSRMVSVAGMAFFIT 256 (520)
Q Consensus 241 ~~~~~~~~~g~~yni~ 256 (520)
+...+++|||+
T Consensus 226 -----~~~~~~~yNig 236 (236)
T PF01370_consen 226 -----PKAAGGIYNIG 236 (236)
T ss_dssp -----SCTTTEEEEES
T ss_pred -----CCCCCCEEEeC
Confidence 34578999996
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=250.06 Aligned_cols=287 Identities=17% Similarity=0.183 Sum_probs=229.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCC--cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~--~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
+|+||||||+|.+|+++++.+.+.|. .+.+. +..-.+||++.++.+++|+
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf--------------------------~~skd~DLt~~a~t~~lF~~e 54 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVF--------------------------IGSKDADLTNLADTRALFESE 54 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCCcceEE--------------------------eccccccccchHHHHHHHhcc
Confidence 47999999999999999999999873 11221 0122479999999999997
Q ss_pred CCCEEEEcccC----CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccC--CCCC-
Q 010005 84 GASTVFYVDAT----DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC--CWKF- 156 (520)
Q Consensus 84 ~~D~Vih~aa~----~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~--~~~p- 156 (520)
++..|||+||. ......+...++.|++.--|++..|.++||+++|++.|.++| .+....|++|++-. |+.|
T Consensus 55 kPthVIhlAAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~K~vsclStCIf--Pdkt~yPIdEtmvh~gpphps 132 (315)
T KOG1431|consen 55 KPTHVIHLAAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVKKVVSCLSTCIF--PDKTSYPIDETMVHNGPPHPS 132 (315)
T ss_pred CCceeeehHhhhcchhhcCCCchHHHhhcceechhHHHHHHHhchhhhhhhcceeec--CCCCCCCCCHHHhccCCCCCC
Confidence 48999999998 234456778899999999999999999999999999999999 55556789998743 2333
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC------CchHHHHHH----hcCCC-ceEEecCCCcccccc
Q 010005 157 QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNL----AKPGW-TKFIIGSGENMSDFT 225 (520)
Q Consensus 157 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~------~~~~~l~~~----~~~g~-~~~i~g~g~~~~~~i 225 (520)
+-.|+..|.++.-.-+.|..++|...+.+-|+++|||.++ .++|.++.+ -..|. ++.++|.|.++|+|+
T Consensus 133 N~gYsyAKr~idv~n~aY~~qhg~~~tsviPtNvfGphDNfnpe~sHVlPali~r~h~ak~~gtd~~~VwGsG~PlRqFi 212 (315)
T KOG1431|consen 133 NFGYSYAKRMIDVQNQAYRQQHGRDYTSVIPTNVFGPHDNFNPENSHVLPALIHRFHEAKRNGTDELTVWGSGSPLRQFI 212 (315)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCceeeeccccccCCCCCCCcccccchHHHHHHHHHHHhcCCceEEEecCCChHHHHh
Confidence 4579999988887789999999999999999999999885 466666543 34555 789999999999999
Q ss_pred cHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC--CcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhc
Q 010005 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE--PIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLG 303 (520)
Q Consensus 226 ~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~--~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~ 303 (520)
|++|+|++++.+++ +-..-+..+++.++ .+|++|+++++.++++.....+- . -
T Consensus 213 ys~DLA~l~i~vlr------~Y~~vEpiils~ge~~EVtI~e~aeaV~ea~~F~G~l~~-D----------------t-- 267 (315)
T KOG1431|consen 213 YSDDLADLFIWVLR------EYEGVEPIILSVGESDEVTIREAAEAVVEAVDFTGKLVW-D----------------T-- 267 (315)
T ss_pred hHhHHHHHHHHHHH------hhcCccceEeccCccceeEHHHHHHHHHHHhCCCceEEe-e----------------c--
Confidence 99999999999998 33444677888877 79999999999999998754211 0 0
Q ss_pred ccccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCC-HHHHHHHHHHHHHhhhhc
Q 010005 304 LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVS-LEEGVSSTIQSFSHLARD 360 (520)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~s-leegi~~~~~~~~~~~~~ 360 (520)
.++.-.+ ..+.|++|++. |+|.|+.+ ++++|.++++||.++...
T Consensus 268 ----tK~DGq~--------kKtasnsKL~s-l~pd~~ft~l~~ai~~t~~Wy~~Ny~q 312 (315)
T KOG1431|consen 268 ----TKSDGQF--------KKTASNSKLRS-LLPDFKFTPLEQAISETVQWYLDNYEQ 312 (315)
T ss_pred ----cCCCCCc--------ccccchHHHHH-hCCCcccChHHHHHHHHHHHHHHhHHh
Confidence 1111111 34679999999 89999886 999999999999998764
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=298.82 Aligned_cols=259 Identities=17% Similarity=0.200 Sum_probs=196.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCEE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~V 88 (520)
|+|+||||+||||++++++|+++| ++|+++++ +... .. ..+++++.+|++|.+++.++++++|+|
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G-~~Vv~l~R--------~~~~-~~-----~~~v~~v~gDL~D~~~l~~al~~vD~V 65 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQG-HEVVGIAR--------HRPD-SW-----PSSADFIAADIRDATAVESAMTGADVV 65 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEEC--------Cchh-hc-----ccCceEEEeeCCCHHHHHHHHhCCCEE
Confidence 589999999999999999999999 59999543 3211 01 125789999999999999999999999
Q ss_pred EEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHH
Q 010005 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAE 168 (520)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E 168 (520)
||+|+.... .+++|+.++.+++++|++.+++||||+||.+ |.++|
T Consensus 66 VHlAa~~~~------~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~-----------------------------K~aaE 110 (854)
T PRK05865 66 AHCAWVRGR------NDHINIDGTANVLKAMAETGTGRIVFTSSGH-----------------------------QPRVE 110 (854)
T ss_pred EECCCcccc------hHHHHHHHHHHHHHHHHHcCCCeEEEECCcH-----------------------------HHHHH
Confidence 999986321 5689999999999999999999999999852 88899
Q ss_pred HHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccC
Q 010005 169 ALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSV 248 (520)
Q Consensus 169 ~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~ 248 (520)
+++.+ ++++++++||+++|||+.. .++..+.. .++...|+++..++|+|++|+|+++..+++ .+..
T Consensus 111 ~ll~~----~gl~~vILRp~~VYGP~~~----~~i~~ll~-~~v~~~G~~~~~~dfIhVdDVA~Ai~~aL~-----~~~~ 176 (854)
T PRK05865 111 QMLAD----CGLEWVAVRCALIFGRNVD----NWVQRLFA-LPVLPAGYADRVVQVVHSDDAQRLLVRALL-----DTVI 176 (854)
T ss_pred HHHHH----cCCCEEEEEeceEeCCChH----HHHHHHhc-CceeccCCCCceEeeeeHHHHHHHHHHHHh-----CCCc
Confidence 88865 5899999999999999732 23333222 222333455667899999999999999886 2334
Q ss_pred CCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccceEech
Q 010005 249 AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDC 328 (520)
Q Consensus 249 ~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 328 (520)
.+++||+++++++|++|+++.+.+... .++.+... ..+ .............+|+
T Consensus 177 ~ggvyNIgsg~~~Si~EIae~l~~~~~------~v~~~~~~-----------~~~---------~~~~~~~~~~~~~~D~ 230 (854)
T PRK05865 177 DSGPVNLAAPGELTFRRIAAALGRPMV------PIGSPVLR-----------RVT---------SFAELELLHSAPLMDV 230 (854)
T ss_pred CCCeEEEECCCcccHHHHHHHHhhhhc------cCCchhhh-----------hcc---------chhhhhcccCCccCCH
Confidence 567999999999999999999876431 11111100 000 0001111112346799
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHhh
Q 010005 329 IAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (520)
Q Consensus 329 ~ka~~~LG~~p~~sleegi~~~~~~~~~~ 357 (520)
+|+++.|||+|+++++|+++++++||++.
T Consensus 231 sKar~~LGw~P~~sLeeGL~dti~~~r~r 259 (854)
T PRK05865 231 TLLRDRWGFQPAWNAEECLEDFTLAVRGR 259 (854)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999873
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=257.28 Aligned_cols=274 Identities=22% Similarity=0.206 Sum_probs=223.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--CCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~~D 86 (520)
|+|||||++|++|++|++.|. .+ ++|+. ++|.. .|+.|++.+.++++ ++|
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~-~~v~a--------~~~~~------------------~Ditd~~~v~~~i~~~~PD 52 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GE-FEVIA--------TDRAE------------------LDITDPDAVLEVIRETRPD 52 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CC-ceEEe--------ccCcc------------------ccccChHHHHHHHHhhCCC
Confidence 459999999999999999998 44 68998 33332 79999999999997 589
Q ss_pred EEEEcccC---CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHH
Q 010005 87 TVFYVDAT---DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (520)
Q Consensus 87 ~Vih~aa~---~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~s 163 (520)
+|||+|+. +.++.+++..+.+|..|+.|++++|++.|. ++||+||-.||- | ....++.|++ +..|.+.||.|
T Consensus 53 vVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga-~lVhiSTDyVFD-G-~~~~~Y~E~D--~~~P~nvYG~s 127 (281)
T COG1091 53 VVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGA-RLVHISTDYVFD-G-EKGGPYKETD--TPNPLNVYGRS 127 (281)
T ss_pred EEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCC-eEEEeecceEec-C-CCCCCCCCCC--CCCChhhhhHH
Confidence 99999999 677888999999999999999999999998 899999999982 2 2234788887 77999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhc
Q 010005 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (520)
Q Consensus 164 K~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~ 243 (520)
|..+|+.++.++. +..|+|.+.+||...++++..+++.++.|+++.+.. ++..+.+++.|+|+++..+++
T Consensus 128 Kl~GE~~v~~~~~----~~~I~Rtswv~g~~g~nFv~tml~la~~~~~l~vv~--Dq~gsPt~~~dlA~~i~~ll~---- 197 (281)
T COG1091 128 KLAGEEAVRAAGP----RHLILRTSWVYGEYGNNFVKTMLRLAKEGKELKVVD--DQYGSPTYTEDLADAILELLE---- 197 (281)
T ss_pred HHHHHHHHHHhCC----CEEEEEeeeeecCCCCCHHHHHHHHhhcCCceEEEC--CeeeCCccHHHHHHHHHHHHh----
Confidence 9999999999754 578999999999988899999999999999876664 588899999999999999888
Q ss_pred ccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccc
Q 010005 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRT 323 (520)
Q Consensus 244 ~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (520)
....+.+||+++....|+.||++.|.+..+.+...+... .. ... ..+.-+| .+
T Consensus 198 --~~~~~~~yH~~~~g~~Swydfa~~I~~~~~~~~~v~~~~-~~---------------~~~--~~~a~RP-------~~ 250 (281)
T COG1091 198 --KEKEGGVYHLVNSGECSWYEFAKAIFEEAGVDGEVIEPI-AS---------------AEY--PTPAKRP-------AN 250 (281)
T ss_pred --ccccCcEEEEeCCCcccHHHHHHHHHHHhCCCccccccc-cc---------------ccc--CccCCCC-------cc
Confidence 344555999999888999999999999998664222110 00 000 0010011 14
Q ss_pred eEechHHHHHhcCCCCCCCHHHHHHHHHHH
Q 010005 324 RTFDCIAAQKHIGYSPVVSLEEGVSSTIQS 353 (520)
Q Consensus 324 ~~~d~~ka~~~LG~~p~~sleegi~~~~~~ 353 (520)
..+|+.|+++.+|++|. +++++++++++.
T Consensus 251 S~L~~~k~~~~~g~~~~-~w~~~l~~~~~~ 279 (281)
T COG1091 251 SSLDTKKLEKAFGLSLP-EWREALKALLDE 279 (281)
T ss_pred cccchHHHHHHhCCCCc-cHHHHHHHHHhh
Confidence 56899999999999996 999998887764
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=267.30 Aligned_cols=284 Identities=18% Similarity=0.161 Sum_probs=201.6
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCEEEE
Q 010005 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTVFY 90 (520)
Q Consensus 11 ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~Vih 90 (520)
||||||+||||+++++.|+++| ++|++++ |++.... ... . ....|+.+ ..+.+.++++|+|||
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g-~~V~~~~--------r~~~~~~--~~~-~----~~~~~~~~-~~~~~~~~~~D~Vvh 63 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG-HEVTILT--------RSPPAGA--NTK-W----EGYKPWAP-LAESEALEGADAVIN 63 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC-CEEEEEe--------CCCCCCC--ccc-c----eeeecccc-cchhhhcCCCCEEEE
Confidence 6899999999999999999999 6999954 4433110 000 0 01112222 445667789999999
Q ss_pred cccCCCC-----CcchhhHHhhhHHHHHHHHHHHHHCCCC--EEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHH
Q 010005 91 VDATDLN-----TDDFYNCYMIIVQGAKNVVTACRECKVR--RLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (520)
Q Consensus 91 ~aa~~~~-----~~~~~~~~~~Nv~gt~~ll~aa~~~gvk--r~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~s 163 (520)
+|+.... ...+...++.|+.++.+++++|++++++ +||++||..+||... ..+.+|+. +..+.+.|+..
T Consensus 64 ~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~~--~~~~~E~~--~~~~~~~~~~~ 139 (292)
T TIGR01777 64 LAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTSE--DRVFTEED--SPAGDDFLAEL 139 (292)
T ss_pred CCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCCC--CCCcCccc--CCCCCChHHHH
Confidence 9997321 1245678899999999999999999873 577778888887533 23567776 33455667777
Q ss_pred HHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhc
Q 010005 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (520)
Q Consensus 164 K~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~ 243 (520)
+...|+.+..+. +.+++++++||+.+|||++. ..+.+......... ..+++|+++++|+|++|+|+++..+++
T Consensus 140 ~~~~e~~~~~~~-~~~~~~~ilR~~~v~G~~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~i~v~Dva~~i~~~l~---- 212 (292)
T TIGR01777 140 CRDWEEAAQAAE-DLGTRVVLLRTGIVLGPKGG-ALAKMLPPFRLGLG-GPLGSGRQWFSWIHIEDLVQLILFALE---- 212 (292)
T ss_pred HHHHHHHhhhch-hcCCceEEEeeeeEECCCcc-hhHHHHHHHhcCcc-cccCCCCcccccEeHHHHHHHHHHHhc----
Confidence 777787766543 46899999999999999753 34444333322211 125788999999999999999999987
Q ss_pred ccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccc
Q 010005 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRT 323 (520)
Q Consensus 244 ~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (520)
.+ ..+++||++++++++++|+++.+.+.+|.+. .+.+|.+...... +. . +. .+..+
T Consensus 213 -~~-~~~g~~~~~~~~~~s~~di~~~i~~~~g~~~-~~~~p~~~~~~~~----------~~----~----~~---~~~~~ 268 (292)
T TIGR01777 213 -NA-SISGPVNATAPEPVRNKEFAKALARALHRPA-FFPVPAFVLRALL----------GE----M----AD---LLLKG 268 (292)
T ss_pred -Cc-ccCCceEecCCCccCHHHHHHHHHHHhCCCC-cCcCCHHHHHHHh----------ch----h----hH---HHhCC
Confidence 22 3346999999999999999999999999764 3567876543211 10 0 01 12236
Q ss_pred eEechHHHHHhcCCCCCC-CHHHHH
Q 010005 324 RTFDCIAAQKHIGYSPVV-SLEEGV 347 (520)
Q Consensus 324 ~~~d~~ka~~~LG~~p~~-sleegi 347 (520)
...+++|+++ +||+|++ +++|++
T Consensus 269 ~~~~~~~~~~-~g~~~~~~~~~~~~ 292 (292)
T TIGR01777 269 QRVLPEKLLE-AGFQFQYPDLDEAL 292 (292)
T ss_pred cccccHHHHh-cCCeeeCcChhhcC
Confidence 6789999986 9999999 588763
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=275.67 Aligned_cols=257 Identities=19% Similarity=0.153 Sum_probs=206.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC----CCC-CCCCCCcEEEEecCCCHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL----LPD-SLSSGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~----l~~-~~~~~~v~~~~~Dl~d~~~l~~ 80 (520)
.++|+||||||+||||+++++.|+++| ++|+++++ +..+.. ..+ ....++++++.+|++|.+++.+
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G-~~V~~l~R--------~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~ 128 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRG-YNVVAVAR--------EKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRK 128 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEEe--------chhhccccchhhHHhhhcCCceEEEeeCCCHHHHHH
Confidence 457899999999999999999999999 59999544 322100 000 0012478999999999999999
Q ss_pred HHc----CCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCC
Q 010005 81 VLE----GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF 156 (520)
Q Consensus 81 ~l~----~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p 156 (520)
+++ ++|+|||+++.... .....+++|+.++.+++++|++.|++|||++||.++|+ |
T Consensus 129 ~~~~~~~~~D~Vi~~aa~~~~--~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~~v~~------------------p 188 (390)
T PLN02657 129 VLFSEGDPVDVVVSCLASRTG--GVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAICVQK------------------P 188 (390)
T ss_pred HHHHhCCCCcEEEECCccCCC--CCccchhhHHHHHHHHHHHHHHcCCCEEEEEeeccccC------------------c
Confidence 998 59999999885221 12345788999999999999999999999999997752 3
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccc-ccccHHHHHHHHH
Q 010005 157 QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS-DFTYVENVAHAHV 235 (520)
Q Consensus 157 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~-~~i~v~Dva~ai~ 235 (520)
...|..+|...|+.+.. ...+++++++||+.+||+. ..++..+..|+++.++|+|+..+ ++||++|+|++++
T Consensus 189 ~~~~~~sK~~~E~~l~~--~~~gl~~tIlRp~~~~~~~-----~~~~~~~~~g~~~~~~GdG~~~~~~~I~v~DlA~~i~ 261 (390)
T PLN02657 189 LLEFQRAKLKFEAELQA--LDSDFTYSIVRPTAFFKSL-----GGQVEIVKDGGPYVMFGDGKLCACKPISEADLASFIA 261 (390)
T ss_pred chHHHHHHHHHHHHHHh--ccCCCCEEEEccHHHhccc-----HHHHHhhccCCceEEecCCcccccCceeHHHHHHHHH
Confidence 45688999999999876 3468999999999999752 33456777888888889988754 6899999999999
Q ss_pred HHHHhhhcccccCCCceEEEeCC-CCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhc
Q 010005 236 CAAEALDSRMVSVAGMAFFITNL-EPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLG 303 (520)
Q Consensus 236 ~~~~~~~~~~~~~~g~~yni~~~-~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~ 303 (520)
.+++ .+...+++|||+++ +.+|++|+++.+.+.+|.+...+.+|.+.......+.+.+.+..+
T Consensus 262 ~~~~-----~~~~~~~~~~Iggp~~~~S~~Eia~~l~~~lG~~~~~~~vp~~~~~~~~~~~~~~~~~~~ 325 (390)
T PLN02657 262 DCVL-----DESKINKVLPIGGPGKALTPLEQGEMLFRILGKEPKFFKVPIQIMDFAIGVLDFLAKIFP 325 (390)
T ss_pred HHHh-----CccccCCEEEcCCCCcccCHHHHHHHHHHHhCCCCceEEcCHHHHHHHHHHHHHhhhhCc
Confidence 9887 34566899999986 689999999999999999888889999998887777776665543
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=284.26 Aligned_cols=260 Identities=18% Similarity=0.150 Sum_probs=195.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCC--cEEEEecCCcccccCCCCCCC----CCC-C----------------C---C
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQSLQLDPSESNS----LLP-D----------------S---L 60 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~--~~V~~~D~~~~~~l~r~~~~~----~l~-~----------------~---~ 60 (520)
++++|+|||||||||+++++.|++.+. .+|+++ .|..... .+. + . .
T Consensus 10 ~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~L--------vR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~ 81 (491)
T PLN02996 10 ENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLL--------LRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSL 81 (491)
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEE--------EeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhh
Confidence 468999999999999999999998642 257774 3332210 000 0 0 0
Q ss_pred CCCCcEEEEecCC-------CHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHC-CCCEEEEeec
Q 010005 61 SSGRAEYHQVDVR-------DISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNST 132 (520)
Q Consensus 61 ~~~~v~~~~~Dl~-------d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-gvkr~V~~SS 132 (520)
...+++++.+|++ |.+.+.++++++|+|||+||......++....++|+.||.+++++|+++ ++++|||+||
T Consensus 82 ~~~kv~~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST 161 (491)
T PLN02996 82 ISEKVTPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNFDERYDVALGINTLGALNVLNFAKKCVKVKMLLHVST 161 (491)
T ss_pred hhcCEEEEecccCCcCCCCChHHHHHHHHhCCCEEEECccccCCcCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEee
Confidence 1257899999998 4555778889999999999985555678899999999999999999997 6899999999
Q ss_pred ccccccCCCC--CCCCC--CC---------------------------c---------------c-CCCCCCChHHHHHH
Q 010005 133 ADVVFDGSHD--IHNGD--ET---------------------------L---------------T-CCWKFQDLMCDLKA 165 (520)
Q Consensus 133 ~~vyg~~~~~--~~~~~--E~---------------------------~---------------~-~~~~p~~~Y~~sK~ 165 (520)
++|||..... ..+.+ ++ . + ....+.+.|+.||+
T Consensus 162 ~~vyG~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~ 241 (491)
T PLN02996 162 AYVCGEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKA 241 (491)
T ss_pred eEEecCCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHH
Confidence 9999864321 11111 00 0 0 01224568999999
Q ss_pred HHHHHHHHhcCCCCceEEEEecCccccCCCCC---c------hHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHH
Q 010005 166 QAEALVLFANNIDGLLTCALRPSNVFGPGDTQ---L------VPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236 (520)
Q Consensus 166 ~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~---~------~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ 236 (520)
.+|+++..+.+ +++++++||++||||++.+ + .+.++..+..|....++++|++.+|++||+|++++++.
T Consensus 242 ~aE~lv~~~~~--~lpv~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~g~~~~~~gdg~~~~D~v~Vddvv~a~l~ 319 (491)
T PLN02996 242 MGEMLLGNFKE--NLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFLADPNSVLDVIPADMVVNAMIV 319 (491)
T ss_pred HHHHHHHHhcC--CCCEEEECCCEeccCCcCCCCCcccchhhHHHHHHHhccceEeEEecCCCeecceecccHHHHHHHH
Confidence 99999998864 8999999999999998653 2 23345556678777789999999999999999999999
Q ss_pred HHHhhhcccccCCCceEEEeCC--CCcCHHHHHHHHHHHcCCCC
Q 010005 237 AAEALDSRMVSVAGMAFFITNL--EPIKFWDFLSIILEGLGYQR 278 (520)
Q Consensus 237 ~~~~~~~~~~~~~g~~yni~~~--~~~t~~el~~~i~~~~g~~~ 278 (520)
++.... .....+++||++++ +++++.|+++.+.+.++..+
T Consensus 320 a~~~~~--~~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~p 361 (491)
T PLN02996 320 AMAAHA--GGQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSKNP 361 (491)
T ss_pred HHHHhh--ccCCCCcEEEecCCCCCcccHHHHHHHHHHHhhhCC
Confidence 887311 01124679999988 88999999999999887543
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.1e-31 Score=245.48 Aligned_cols=324 Identities=19% Similarity=0.128 Sum_probs=244.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCC--CCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~--~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
++|+.||||-||+-|++|++.|+++| |+|.++.+..+. .+.....+.+ ....+++.++.+|++|...+.++++.
T Consensus 1 ~~K~ALITGITGQDGsYLa~lLLekG-Y~VhGi~Rrss~---~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~ 76 (345)
T COG1089 1 MGKVALITGITGQDGSYLAELLLEKG-YEVHGIKRRSSS---FNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEE 76 (345)
T ss_pred CCceEEEecccCCchHHHHHHHHhcC-cEEEEEeecccc---CCcccceeccccccCCceeEEEeccccchHHHHHHHHh
Confidence 36899999999999999999999999 799996544321 1111101111 22345688999999999999999984
Q ss_pred --CCEEEEcccC---CCCCcchhhHHhhhHHHHHHHHHHHHHCCC--CEEEEeecccccccCCCCCCCCCCCccCCCCCC
Q 010005 85 --ASTVFYVDAT---DLNTDDFYNCYMIIVQGAKNVVTACRECKV--RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQ 157 (520)
Q Consensus 85 --~D~Vih~aa~---~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gv--kr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~ 157 (520)
+|-|+|+||+ ..+..+|..+.+++..||.|++||.+..|. .||..+||...||.. ...|.+|++ |..|.
T Consensus 77 v~PdEIYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v--~~~pq~E~T--PFyPr 152 (345)
T COG1089 77 VQPDEIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLV--QEIPQKETT--PFYPR 152 (345)
T ss_pred cCchhheeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCc--ccCccccCC--CCCCC
Confidence 7999999999 577889999999999999999999999863 589999999999754 445889998 67999
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC--CchHHH---HHHhcCCC-ceEEecCCCcccccccHHHHH
Q 010005 158 DLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLL---VNLAKPGW-TKFIIGSGENMSDFTYVENVA 231 (520)
Q Consensus 158 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~--~~~~~l---~~~~~~g~-~~~i~g~g~~~~~~i~v~Dva 231 (520)
+||+.+|..+--+...|...+|+-.|.=+..+-=+|... .+...+ +.+++.|. ....+|+-+..|||-|+.|-+
T Consensus 153 SPYAvAKlYa~W~tvNYResYgl~AcnGILFNHESP~Rge~FVTRKIt~ava~Ik~G~q~~l~lGNldAkRDWG~A~DYV 232 (345)
T COG1089 153 SPYAVAKLYAYWITVNYRESYGLFACNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGHAKDYV 232 (345)
T ss_pred CHHHHHHHHHHheeeehHhhcCceeecceeecCCCCCCccceehHHHHHHHHHHHccccceEEeccccccccccchHHHH
Confidence 999999999999999999999998887666665566543 222222 33344443 346788889999999999999
Q ss_pred HHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHH-Hhccc--ccC
Q 010005 232 HAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHE-KLGLR--TYN 308 (520)
Q Consensus 232 ~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~-~~~~~--~~~ 308 (520)
+++..+++ ....+.|.|++++..|++||++...+..|.+....--- .-|.-.+ ..|.. ..+
T Consensus 233 e~mwlmLQ-------q~~PddyViATg~t~sVrefv~~Af~~~g~~l~w~g~g---------~~e~g~da~~G~~~V~id 296 (345)
T COG1089 233 EAMWLMLQ-------QEEPDDYVIATGETHSVREFVELAFEMVGIDLEWEGTG---------VDEKGVDAKTGKIIVEID 296 (345)
T ss_pred HHHHHHHc-------cCCCCceEEecCceeeHHHHHHHHHHHcCceEEEeecc---------ccccccccccCceeEEEC
Confidence 99999998 23356899999999999999999999999653211000 0000000 00000 013
Q ss_pred CCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhh
Q 010005 309 HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (520)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~ 358 (520)
+..++|.++..+ .-|.+||+++|||+|+++++|.+++++++..+..
T Consensus 297 p~~fRPaEV~~L----lgdp~KA~~~LGW~~~~~~~elv~~Mv~~dl~~~ 342 (345)
T COG1089 297 PRYFRPAEVDLL----LGDPTKAKEKLGWRPEVSLEELVREMVEADLEAA 342 (345)
T ss_pred ccccCchhhhhh----cCCHHHHHHHcCCccccCHHHHHHHHHHHHHHHh
Confidence 445666666543 3599999999999999999999999999887654
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.8e-31 Score=264.33 Aligned_cols=247 Identities=21% Similarity=0.159 Sum_probs=182.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC----CCCCC-CCCCcEEEEecCCCHHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL----LPDSL-SSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~----l~~~~-~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
++++||||||+||||++++++|+++| ++|+++ .|+..... +.... ...+++++.+|++|.+++.++
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G-~~V~~~--------~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~ 75 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRG-YTVHAA--------VQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDA 75 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEE--------EcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHH
Confidence 45789999999999999999999999 599984 44321100 11110 123688899999999999999
Q ss_pred HcCCCEEEEcccCCC-CCcchhhHHhhhHHHHHHHHHHHHHC-CCCEEEEeecccccccC---CCCCCCCCCCccCCC--
Q 010005 82 LEGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDG---SHDIHNGDETLTCCW-- 154 (520)
Q Consensus 82 l~~~D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~ll~aa~~~-gvkr~V~~SS~~vyg~~---~~~~~~~~E~~~~~~-- 154 (520)
+.++|+|+|+++... ...+++.++++|+.|+.+++++|.+. +++|+|++||.++++.+ .....+.+|+.|.+.
T Consensus 76 l~~~d~v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~ 155 (297)
T PLN02583 76 LKGCSGLFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNF 155 (297)
T ss_pred HcCCCEEEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHH
Confidence 999999999876522 22346788999999999999999987 58999999999876422 122335677654221
Q ss_pred --CCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHH
Q 010005 155 --KFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAH 232 (520)
Q Consensus 155 --~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ 232 (520)
.+...|+.||..+|+++..+++++|++++++||+.||||+.....+ ...+.. ...++ ..++|+||+|+|+
T Consensus 156 ~~~~~~~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~~~~-----~~~~~~-~~~~~--~~~~~v~V~Dva~ 227 (297)
T PLN02583 156 CRKFKLWHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLTQHNP-----YLKGAA-QMYEN--GVLVTVDVNFLVD 227 (297)
T ss_pred HhhcccHHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCCCchh-----hhcCCc-ccCcc--cCcceEEHHHHHH
Confidence 1223799999999999999887789999999999999998753222 122221 12222 3468999999999
Q ss_pred HHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCC
Q 010005 233 AHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGY 276 (520)
Q Consensus 233 ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~ 276 (520)
|++.+++ .+... +.|+++++......++++.+.+.++.
T Consensus 228 a~~~al~-----~~~~~-~r~~~~~~~~~~~~~~~~~~~~~~p~ 265 (297)
T PLN02583 228 AHIRAFE-----DVSSY-GRYLCFNHIVNTEEDAVKLAQMLSPL 265 (297)
T ss_pred HHHHHhc-----CcccC-CcEEEecCCCccHHHHHHHHHHhCCC
Confidence 9999998 33444 47888875555567899999998753
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-30 Score=255.14 Aligned_cols=272 Identities=13% Similarity=0.052 Sum_probs=196.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.+.||||||||+||||++|+++|+++|+ +|+. .. +|+.|.+.+...++
T Consensus 7 ~~~~kiLVtG~tGfiG~~l~~~L~~~g~-~V~~--------~~---------------------~~~~~~~~v~~~l~~~ 56 (298)
T PLN02778 7 SATLKFLIYGKTGWIGGLLGKLCQEQGI-DFHY--------GS---------------------GRLENRASLEADIDAV 56 (298)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHhCCC-EEEE--------ec---------------------CccCCHHHHHHHHHhc
Confidence 3568999999999999999999999994 8875 11 23455566666666
Q ss_pred CCCEEEEcccCCC------CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCC----CCCCCCCCccCC
Q 010005 84 GASTVFYVDATDL------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSH----DIHNGDETLTCC 153 (520)
Q Consensus 84 ~~D~Vih~aa~~~------~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~----~~~~~~E~~~~~ 153 (520)
++|+|||+||... +..++...+++|+.|+.+++++|++.|++ ++++||.++|+.+.. ...+.+|+++ +
T Consensus 57 ~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~-~v~~sS~~vy~~~~~~p~~~~~~~~Ee~~-p 134 (298)
T PLN02778 57 KPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV-LTNYATGCIFEYDDAHPLGSGIGFKEEDT-P 134 (298)
T ss_pred CCCEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEecceEeCCCCCCCcccCCCCCcCCC-C
Confidence 6899999999832 33578899999999999999999999995 566777788865421 1224566553 3
Q ss_pred CCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHH
Q 010005 154 WKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHA 233 (520)
Q Consensus 154 ~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~a 233 (520)
..|.++|+.+|.++|+++..+++ ..++|+...+|++.. ....++..+..++.+...+ .+|+|++|+++|
T Consensus 135 ~~~~s~Yg~sK~~~E~~~~~y~~-----~~~lr~~~~~~~~~~-~~~~fi~~~~~~~~~~~~~-----~s~~yv~D~v~a 203 (298)
T PLN02778 135 NFTGSFYSKTKAMVEELLKNYEN-----VCTLRVRMPISSDLS-NPRNFITKITRYEKVVNIP-----NSMTILDELLPI 203 (298)
T ss_pred CCCCCchHHHHHHHHHHHHHhhc-----cEEeeecccCCcccc-cHHHHHHHHHcCCCeeEcC-----CCCEEHHHHHHH
Confidence 44568999999999999998764 457888887886532 2345677777777644433 379999999999
Q ss_pred HHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCc--ccCChHHHHHHHHHHHHHHHHhcccccCCCC
Q 010005 234 HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPF--IKLPTGVVWYIILLVKWIHEKLGLRTYNHSL 311 (520)
Q Consensus 234 i~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~--v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (520)
++.+++ ... +++||++++++++++|+++.+++.+|.+... +.++ .
T Consensus 204 l~~~l~------~~~-~g~yNigs~~~iS~~el~~~i~~~~~~~~~~~~~~i~-~------------------------- 250 (298)
T PLN02778 204 SIEMAK------RNL-TGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLE-E------------------------- 250 (298)
T ss_pred HHHHHh------CCC-CCeEEeCCCCcccHHHHHHHHHHHhCCCceeccccHH-H-------------------------
Confidence 999887 233 3599999999999999999999999864321 1211 0
Q ss_pred chHHHHHHh-ccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Q 010005 312 SACYIVQLA-SRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSH 356 (520)
Q Consensus 312 ~~~~~~~~~-~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~ 356 (520)
.....+. .....+|++|+++.++=.+. ..+++++...+-.+.
T Consensus 251 --~~~~~~~~~~~~~Ld~~k~~~~~~~~~~-~~~~~~~~~~~~~~~ 293 (298)
T PLN02778 251 --QAKVIVAPRSNNELDTTKLKREFPELLP-IKESLIKYVFEPNKK 293 (298)
T ss_pred --HHHHHhCCCccccccHHHHHHhcccccc-hHHHHHHHHHHHHHh
Confidence 0000000 11235899999998775453 567777777766644
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=248.96 Aligned_cols=238 Identities=25% Similarity=0.312 Sum_probs=182.3
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcE----EEEecCCCHHHHHHHHc--C
Q 010005 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAE----YHQVDVRDISQIKKVLE--G 84 (520)
Q Consensus 11 ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~----~~~~Dl~d~~~l~~~l~--~ 84 (520)
||||||+|.||+.|+++|++.+...++++|++.+....- ...+......++++ .+.+|++|.+.+.++++ +
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l---~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~ 77 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYEL---ERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYK 77 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHH---HHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHH---HHHHhhcccccCcccccCceeecccCHHHHHHHHhhcC
Confidence 799999999999999999999867899977654210000 00111111223343 45899999999999999 8
Q ss_pred CCEEEEcccC---CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHH
Q 010005 85 ASTVFYVDAT---DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (520)
Q Consensus 85 ~D~Vih~aa~---~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~ 161 (520)
+|+|||.||. +..+.+|.+..++|+.||.|++++|.+++|+|||++||..++ +|.+.||
T Consensus 78 pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv------------------~PtnvmG 139 (293)
T PF02719_consen 78 PDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAV------------------NPTNVMG 139 (293)
T ss_dssp -SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCS------------------S--SHHH
T ss_pred CCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccC------------------CCCcHHH
Confidence 9999999999 667789999999999999999999999999999999998775 6889999
Q ss_pred HHHHHHHHHHHHhcCCC---CceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHH
Q 010005 162 DLKAQAEALVLFANNID---GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238 (520)
Q Consensus 162 ~sK~~~E~~~~~~~~~~---gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~ 238 (520)
.||..+|.++..++... +..++++|+|+|.|.+ .+++|.|.+++++|+|+.+. +.+..|=|+.+++.++.++.+.
T Consensus 140 atKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~-GSVip~F~~Qi~~g~PlTvT-~p~mtRffmti~EAv~Lvl~a~ 217 (293)
T PF02719_consen 140 ATKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSR-GSVIPLFKKQIKNGGPLTVT-DPDMTRFFMTIEEAVQLVLQAA 217 (293)
T ss_dssp HHHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGT-TSCHHHHHHHHHTTSSEEEC-ETT-EEEEE-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCC-CcHHHHHHHHHHcCCcceeC-CCCcEEEEecHHHHHHHHHHHH
Confidence 99999999999998765 6899999999999975 48999999999999997664 5578899999999999999988
Q ss_pred HhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCC
Q 010005 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQ 277 (520)
Q Consensus 239 ~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~ 277 (520)
. ....|++|...-++++++.|+++.+.+..|.+
T Consensus 218 ~------~~~~geifvl~mg~~v~I~dlA~~~i~~~g~~ 250 (293)
T PF02719_consen 218 A------LAKGGEIFVLDMGEPVKILDLAEAMIELSGLE 250 (293)
T ss_dssp H------H--TTEEEEE---TCEECCCHHHHHHHHTT-E
T ss_pred h------hCCCCcEEEecCCCCcCHHHHHHHHHhhcccc
Confidence 7 45678899999889999999999999999864
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-29 Score=254.27 Aligned_cols=242 Identities=22% Similarity=0.269 Sum_probs=208.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~-- 84 (520)
++|+||||||+|.||+.+++++++.+..+++.+|++......- ..++.+.....+...+.||++|.+.+.+++++
T Consensus 249 ~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i---~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~k 325 (588)
T COG1086 249 TGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLI---DMELREKFPELKLRFYIGDVRDRDRVERAMEGHK 325 (588)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHH---HHHHHhhCCCcceEEEecccccHHHHHHHHhcCC
Confidence 4799999999999999999999999877899954433110000 11222222346788999999999999999998
Q ss_pred CCEEEEcccC---CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHH
Q 010005 85 ASTVFYVDAT---DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (520)
Q Consensus 85 ~D~Vih~aa~---~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~ 161 (520)
+|+|||.||. +..+.+|.+.+++|+.||.|+++||.++||++||.+||..+. +|.+.||
T Consensus 326 vd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV------------------~PtNvmG 387 (588)
T COG1086 326 VDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAV------------------NPTNVMG 387 (588)
T ss_pred CceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCccc------------------CCchHhh
Confidence 9999999999 788999999999999999999999999999999999998765 6889999
Q ss_pred HHHHHHHHHHHHhcCCC---CceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHH
Q 010005 162 DLKAQAEALVLFANNID---GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238 (520)
Q Consensus 162 ~sK~~~E~~~~~~~~~~---gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~ 238 (520)
.||..+|.++..++++. +..++++|+|||.|.+ .+++|.|.+.+.+|+|+.+ .+.+..|=|+.+.|.++.++.+.
T Consensus 388 aTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSr-GSViPlFk~QI~~GgplTv-Tdp~mtRyfMTI~EAv~LVlqA~ 465 (588)
T COG1086 388 ATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSR-GSVIPLFKKQIAEGGPLTV-TDPDMTRFFMTIPEAVQLVLQAG 465 (588)
T ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCC-CCCHHHHHHHHHcCCCccc-cCCCceeEEEEHHHHHHHHHHHH
Confidence 99999999999987633 4899999999999986 3899999999999999765 56788899999999999999888
Q ss_pred HhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCC
Q 010005 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQ 277 (520)
Q Consensus 239 ~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~ 277 (520)
. ....|++|-+..|+++++.|+++.+.+..|..
T Consensus 466 a------~~~gGeifvldMGepvkI~dLAk~mi~l~g~~ 498 (588)
T COG1086 466 A------IAKGGEIFVLDMGEPVKIIDLAKAMIELAGQT 498 (588)
T ss_pred h------hcCCCcEEEEcCCCCeEHHHHHHHHHHHhCCC
Confidence 7 57788999999999999999999999999844
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-29 Score=255.64 Aligned_cols=259 Identities=21% Similarity=0.199 Sum_probs=189.9
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCC----C---------CCCC-CCCCCcEEEEecCCC
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNS----L---------LPDS-LSSGRAEYHQVDVRD 74 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~----~---------l~~~-~~~~~v~~~~~Dl~d 74 (520)
+|+|||||||||+++++.|+++|+ ++|+++. |+.... . +... ....+++.+.+|+++
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~--------R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~ 72 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLV--------RAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSE 72 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEE--------ccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCc
Confidence 589999999999999999999985 3699944 432210 0 0000 001478999999875
Q ss_pred H------HHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCC
Q 010005 75 I------SQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 75 ~------~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
+ +.+.++.+++|+|||+|+......+.....+.|+.++.+++++|.+.++++|||+||.++|+..... +..|
T Consensus 73 ~~~gl~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~iSS~~v~~~~~~~--~~~~ 150 (367)
T TIGR01746 73 PRLGLSDAEWERLAENVDTIVHNGALVNWVYPYSELRAANVLGTREVLRLAASGRAKPLHYVSTISVLAAIDLS--TVTE 150 (367)
T ss_pred ccCCcCHHHHHHHHhhCCEEEeCCcEeccCCcHHHHhhhhhHHHHHHHHHHhhCCCceEEEEccccccCCcCCC--Cccc
Confidence 3 4677777899999999998544456777889999999999999999999999999999999754322 1233
Q ss_pred CccC---CCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC------CchHHHHHHhcCCCceEEecCCC
Q 010005 149 TLTC---CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSGE 219 (520)
Q Consensus 149 ~~~~---~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~------~~~~~l~~~~~~g~~~~i~g~g~ 219 (520)
+.+. ...+.+.|+.+|..+|.+++.+.+ .|++++++||+.+||+... ..+..++......+ ..+++.
T Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~---~~p~~~ 226 (367)
T TIGR01746 151 DDAIVTPPPGLAGGYAQSKWVAELLVREASD-RGLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALG---AYPDSP 226 (367)
T ss_pred cccccccccccCCChHHHHHHHHHHHHHHHh-cCCCEEEECCCceeecCCCCCCCchhHHHHHHHHHHHhC---CCCCCC
Confidence 3221 223457899999999999998776 4999999999999997432 22333333332222 122333
Q ss_pred -cccccccHHHHHHHHHHHHHhhhcccccC--CCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHH
Q 010005 220 -NMSDFTYVENVAHAHVCAAEALDSRMVSV--AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVV 288 (520)
Q Consensus 220 -~~~~~i~v~Dva~ai~~~~~~~~~~~~~~--~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~ 288 (520)
...+|+|++|++++++.++.. +.. .+++||++++++++++|+++.+.+ .|.+.+.++.+.|..
T Consensus 227 ~~~~~~~~vddva~ai~~~~~~-----~~~~~~~~~~~v~~~~~~s~~e~~~~i~~-~g~~~~~~~~~~w~~ 292 (367)
T TIGR01746 227 ELTEDLTPVDYVARAIVALSSQ-----PAASAGGPVFHVVNPEPVSLDEFLEWLER-AGYNLKLVSFDEWLQ 292 (367)
T ss_pred ccccCcccHHHHHHHHHHHHhC-----CCcccCCceEEecCCCCCCHHHHHHHHHH-cCCCCCcCCHHHHHH
Confidence 367899999999999988872 222 278999999999999999999999 888766555555543
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=222.33 Aligned_cols=284 Identities=18% Similarity=0.207 Sum_probs=202.0
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc-CCCEEE
Q 010005 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-GASTVF 89 (520)
Q Consensus 11 ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-~~D~Vi 89 (520)
|+|||||||||++|+..|.+.|| +|++ ++|++.+.... .+..+. ..+.+.+..+ ++|+||
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh-~v~i--------ltR~~~~~~~~---~~~~v~-------~~~~~~~~~~~~~DavI 61 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH-QVTI--------LTRRPPKASQN---LHPNVT-------LWEGLADALTLGIDAVI 61 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC-eEEE--------EEcCCcchhhh---cCcccc-------ccchhhhcccCCCCEEE
Confidence 68999999999999999999996 9999 67776532111 111111 1223444555 799999
Q ss_pred EcccCCC-----CCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHH
Q 010005 90 YVDATDL-----NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (520)
Q Consensus 90 h~aa~~~-----~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~ 162 (520)
|+||.+. .....+.+.+--+..|..|.++..+. +.+.+|..|..+-||.. .....+|+.| ...+.-+.
T Consensus 62 NLAG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~--~~~~~tE~~~---~g~~Fla~ 136 (297)
T COG1090 62 NLAGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHS--GDRVVTEESP---PGDDFLAQ 136 (297)
T ss_pred ECCCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCC--CceeeecCCC---CCCChHHH
Confidence 9999832 23355678888899999999999854 57788888888888654 3346777753 23344455
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhc--CCCceEEecCCCcccccccHHHHHHHHHHHHHh
Q 010005 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAK--PGWTKFIIGSGENMSDFTYVENVAHAHVCAAEA 240 (520)
Q Consensus 163 sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~--~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~ 240 (520)
.=..-|+....... .|.+++.+|.|.|.|+... .++.+....+ -|. ..|+|+++++|||++|+++++..+++
T Consensus 137 lc~~WE~~a~~a~~-~gtRvvllRtGvVLs~~GG-aL~~m~~~fk~glGG---~~GsGrQ~~SWIhieD~v~~I~fll~- 210 (297)
T COG1090 137 LCQDWEEEALQAQQ-LGTRVVLLRTGVVLSPDGG-ALGKMLPLFKLGLGG---KLGSGRQWFSWIHIEDLVNAILFLLE- 210 (297)
T ss_pred HHHHHHHHHhhhhh-cCceEEEEEEEEEecCCCc-chhhhcchhhhccCC---ccCCCCceeeeeeHHHHHHHHHHHHh-
Confidence 55556666666543 6999999999999998653 3333322222 233 35999999999999999999999999
Q ss_pred hhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHh
Q 010005 241 LDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLA 320 (520)
Q Consensus 241 ~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (520)
++...| .||++.+.|++.+||...+.++++++. ...+|...++.... |....+++
T Consensus 211 ----~~~lsG-p~N~taP~PV~~~~F~~al~r~l~RP~-~~~vP~~~~rl~LG--e~a~~lL~----------------- 265 (297)
T COG1090 211 ----NEQLSG-PFNLTAPNPVRNKEFAHALGRALHRPA-ILPVPSFALRLLLG--EMADLLLG----------------- 265 (297)
T ss_pred ----CcCCCC-cccccCCCcCcHHHHHHHHHHHhCCCc-cccCcHHHHHHHhh--hhHHHHhc-----------------
Confidence 344444 999999999999999999999999874 46788777654433 22222222
Q ss_pred ccceEechHHHHHhcCCCCCC-CHHHHHHHHHH
Q 010005 321 SRTRTFDCIAAQKHIGYSPVV-SLEEGVSSTIQ 352 (520)
Q Consensus 321 ~~~~~~d~~ka~~~LG~~p~~-sleegi~~~~~ 352 (520)
....=..|+.+ .||+.++ ++++++.+.+.
T Consensus 266 --gQrvlP~kl~~-aGF~F~y~dl~~AL~~il~ 295 (297)
T COG1090 266 --GQRVLPKKLEA-AGFQFQYPDLEEALADILK 295 (297)
T ss_pred --cchhhHHHHHH-CCCeeecCCHHHHHHHHHh
Confidence 23344567766 7999887 78998887654
|
|
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=253.65 Aligned_cols=264 Identities=13% Similarity=0.165 Sum_probs=190.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCC--cEEEEecCCcccc--cCCCCCCCCC----------------CCCCCCCCcE
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQSLQ--LDPSESNSLL----------------PDSLSSGRAE 66 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~--~~V~~~D~~~~~~--l~r~~~~~~l----------------~~~~~~~~v~ 66 (520)
++++|||||||||||++|++.|++.++ .+|+++.+..... ..|- ...+ .+.....++.
T Consensus 118 ~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl--~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~ 195 (605)
T PLN02503 118 RGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERL--KNEVIDAELFKCLQETHGKSYQSFMLSKLV 195 (605)
T ss_pred cCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHH--HHHHhhhhhHHHHHHhcCccccccccccEE
Confidence 468999999999999999999998763 2578843321100 0000 0000 0001134788
Q ss_pred EEEecCCCH------HHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCC-CCEEEEeecccccccC
Q 010005 67 YHQVDVRDI------SQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDG 139 (520)
Q Consensus 67 ~~~~Dl~d~------~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-vkr~V~~SS~~vyg~~ 139 (520)
.+.+|++++ +..+.+.+++|+|||+|+......+++...++|+.|+.+++++|++.+ +++|||+||++|||..
T Consensus 196 ~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTayVyG~~ 275 (605)
T PLN02503 196 PVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTFDERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYVNGQR 275 (605)
T ss_pred EEEeeCCCcccCCCHHHHHHHHhcCCEEEECccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCceeecCC
Confidence 999999986 455666678999999999855556788999999999999999999875 7899999999999875
Q ss_pred CCC--CCCCC--C--------------------------------CccC------------------CCCCCChHHHHHH
Q 010005 140 SHD--IHNGD--E--------------------------------TLTC------------------CWKFQDLMCDLKA 165 (520)
Q Consensus 140 ~~~--~~~~~--E--------------------------------~~~~------------------~~~p~~~Y~~sK~ 165 (520)
... +.+.+ + ..+. ...-.+.|..||+
T Consensus 276 ~G~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNtYt~TK~ 355 (605)
T PLN02503 276 QGRIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTYVFTKA 355 (605)
T ss_pred CCeeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCChHHHHHH
Confidence 321 11111 0 0000 0122478999999
Q ss_pred HHHHHHHHhcCCCCceEEEEecCcc----------ccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHH
Q 010005 166 QAEALVLFANNIDGLLTCALRPSNV----------FGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHV 235 (520)
Q Consensus 166 ~~E~~~~~~~~~~gi~~~ilRp~~v----------yGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~ 235 (520)
.+|++++++.+ ++|++|+||+.| +++++....+.+... ..|.....+++++...|+|+||.++++++
T Consensus 356 lAE~lV~~~~~--~LPv~IvRPsiV~st~~eP~pGw~d~~~~~~p~~~~~-g~G~lr~~~~~~~~~~DiVPVD~vvna~i 432 (605)
T PLN02503 356 MGEMVINSMRG--DIPVVIIRPSVIESTWKDPFPGWMEGNRMMDPIVLYY-GKGQLTGFLADPNGVLDVVPADMVVNATL 432 (605)
T ss_pred HHHHHHHHhcC--CCCEEEEcCCEecccccCCccccccCccccchhhhhe-eccceeEEEeCCCeeEeEEeecHHHHHHH
Confidence 99999998764 899999999999 555544344444333 36665568899999999999999999999
Q ss_pred HHHHhhhcccccCCCceEEEeCC--CCcCHHHHHHHHHHHcCC
Q 010005 236 CAAEALDSRMVSVAGMAFFITNL--EPIKFWDFLSIILEGLGY 276 (520)
Q Consensus 236 ~~~~~~~~~~~~~~g~~yni~~~--~~~t~~el~~~i~~~~g~ 276 (520)
.++... .......+++||++++ +|++++|+.+.+.+.+..
T Consensus 433 ~a~a~~-~~~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~~ 474 (605)
T PLN02503 433 AAMAKH-GGAAKPEINVYQIASSVVNPLVFQDLARLLYEHYKS 474 (605)
T ss_pred HHHHhh-hcccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHHhh
Confidence 885421 1112235789999988 899999999999987654
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-26 Score=225.84 Aligned_cols=272 Identities=16% Similarity=0.134 Sum_probs=188.3
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHH------c
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL------E 83 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l------~ 83 (520)
+|+||||||++|++++++|+++| ++|++ +.|++++. ...+++.+.+|+.|++++.+++ +
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g-~~V~~--------~~R~~~~~------~~~~~~~~~~d~~d~~~l~~a~~~~~~~~ 65 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS-VPFLV--------ASRSSSSS------AGPNEKHVKFDWLDEDTWDNPFSSDDGME 65 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC-CcEEE--------EeCCCccc------cCCCCccccccCCCHHHHHHHHhcccCcC
Confidence 58999999999999999999999 59999 66665422 1236778899999999999999 6
Q ss_pred C-CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHH
Q 010005 84 G-ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (520)
Q Consensus 84 ~-~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~ 162 (520)
+ +|.|+|+++.... ....+.+++++|+++|++||||+||..++.. .+
T Consensus 66 g~~d~v~~~~~~~~~----------~~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~----------------~~------ 113 (285)
T TIGR03649 66 PEISAVYLVAPPIPD----------LAPPMIKFIDFARSKGVRRFVLLSASIIEKG----------------GP------ 113 (285)
T ss_pred CceeEEEEeCCCCCC----------hhHHHHHHHHHHHHcCCCEEEEeeccccCCC----------------Cc------
Confidence 7 9999999874211 1345578999999999999999999765310 00
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhh
Q 010005 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242 (520)
Q Consensus 163 sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~ 242 (520)
.+...|+++++. .|++++++||+.+|++.... .....+..+.. ...+.|+..++|+|++|+|+++..+++
T Consensus 114 ~~~~~~~~l~~~---~gi~~tilRp~~f~~~~~~~---~~~~~~~~~~~-~~~~~g~~~~~~v~~~Dva~~~~~~l~--- 183 (285)
T TIGR03649 114 AMGQVHAHLDSL---GGVEYTVLRPTWFMENFSEE---FHVEAIRKENK-IYSATGDGKIPFVSADDIARVAYRALT--- 183 (285)
T ss_pred hHHHHHHHHHhc---cCCCEEEEeccHHhhhhccc---ccccccccCCe-EEecCCCCccCcccHHHHHHHHHHHhc---
Confidence 123345555442 48999999999988653211 11223333333 345668888999999999999999887
Q ss_pred cccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHH---
Q 010005 243 SRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQL--- 319 (520)
Q Consensus 243 ~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 319 (520)
.+...++.|++++++.+|++|+++.+.+.+|++.+.+.+|..... +.+.+ .|. .+.+.......
T Consensus 184 --~~~~~~~~~~l~g~~~~s~~eia~~l~~~~g~~v~~~~~~~~~~~------~~l~~-~g~----~~~~~~~~~~~~~~ 250 (285)
T TIGR03649 184 --DKVAPNTDYVVLGPELLTYDDVAEILSRVLGRKITHVKLTEEELA------QRLQS-FGM----PEDLARMLASLDTA 250 (285)
T ss_pred --CCCcCCCeEEeeCCccCCHHHHHHHHHHHhCCceEEEeCCHHHHH------HHHHH-cCC----CHHHHHHHHHHHHH
Confidence 345567899999999999999999999999998877777765321 11111 010 00000001111
Q ss_pred -hccceEechHHHHHhcCCCCCCCHHHHHHHHHH
Q 010005 320 -ASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQ 352 (520)
Q Consensus 320 -~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~ 352 (520)
........++..++.+|.+|+ +++|.+++..+
T Consensus 251 ~~~g~~~~~~~~~~~~~G~~p~-~~~~~~~~~~~ 283 (285)
T TIGR03649 251 VKNGAEVRLNDVVKAVTGSKPR-GFRDFAESNKA 283 (285)
T ss_pred HhCCccccccchHHHHhCcCCc-cHHHHHHHhhh
Confidence 011111135566777899996 89988877643
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=247.24 Aligned_cols=268 Identities=13% Similarity=0.053 Sum_probs=186.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--C
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~ 84 (520)
+.||||||||+||||++|++.|.++| ++|.. ..+|++|.+++.+.++ +
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g-~~v~~-----------------------------~~~~l~d~~~v~~~i~~~~ 428 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQG-IAYEY-----------------------------GKGRLEDRSSLLADIRNVK 428 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCC-CeEEe-----------------------------eccccccHHHHHHHHHhhC
Confidence 56899999999999999999999999 47632 0135778888888876 6
Q ss_pred CCEEEEcccCCC------CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCC----CCCCCCCCCccCCC
Q 010005 85 ASTVFYVDATDL------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGS----HDIHNGDETLTCCW 154 (520)
Q Consensus 85 ~D~Vih~aa~~~------~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~----~~~~~~~E~~~~~~ 154 (520)
+|+||||||... +..++...+++|+.++.+++++|++.|+ ++|++||.+||+.+. ....+++|+++ +.
T Consensus 429 pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~-~~v~~Ss~~v~~~~~~~~~~~~~p~~E~~~-~~ 506 (668)
T PLN02260 429 PTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL-LMMNFATGCIFEYDAKHPEGSGIGFKEEDK-PN 506 (668)
T ss_pred CCEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC-eEEEEcccceecCCcccccccCCCCCcCCC-CC
Confidence 899999999731 2357889999999999999999999999 577888889986432 11235677653 33
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCc-eEEecCCCcccccccHHHHHHH
Q 010005 155 KFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT-KFIIGSGENMSDFTYVENVAHA 233 (520)
Q Consensus 155 ~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~-~~i~g~g~~~~~~i~v~Dva~a 233 (520)
.+.+.|+.||.++|+++..+.+ ..++|+..+||.+... ...|+..+..... +.++ .+..+++|++.+
T Consensus 507 ~~~~~Yg~sK~~~E~~~~~~~~-----~~~~r~~~~~~~~~~~-~~nfv~~~~~~~~~~~vp------~~~~~~~~~~~~ 574 (668)
T PLN02260 507 FTGSFYSKTKAMVEELLREYDN-----VCTLRVRMPISSDLSN-PRNFITKISRYNKVVNIP------NSMTVLDELLPI 574 (668)
T ss_pred CCCChhhHHHHHHHHHHHhhhh-----heEEEEEEecccCCCC-ccHHHHHHhccceeeccC------CCceehhhHHHH
Confidence 4558999999999999988743 5677777788643211 1233344333332 2231 246678889988
Q ss_pred HHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCch
Q 010005 234 HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSA 313 (520)
Q Consensus 234 i~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (520)
++.+++ . ..+++||+++++.+|++|+++.+.+.++......+++.. +....... ..|
T Consensus 575 ~~~l~~------~-~~~giyni~~~~~~s~~e~a~~i~~~~~~~~~~~~~~~~---------~~~~~~~a----~rp--- 631 (668)
T PLN02260 575 SIEMAK------R-NLRGIWNFTNPGVVSHNEILEMYKDYIDPGFKWSNFTLE---------EQAKVIVA----PRS--- 631 (668)
T ss_pred HHHHHH------h-CCCceEEecCCCcCcHHHHHHHHHHhcCCcccccccCHH---------HhhhHhhC----CCc---
Confidence 887776 1 225799999999999999999999987421101112100 00000000 011
Q ss_pred HHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHH
Q 010005 314 CYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQ 352 (520)
Q Consensus 314 ~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~ 352 (520)
.+.+|++|+++.+|. +. +++|++++++.
T Consensus 632 ---------~~~l~~~k~~~~~~~-~~-~~~~~l~~~~~ 659 (668)
T PLN02260 632 ---------NNEMDASKLKKEFPE-LL-SIKESLIKYVF 659 (668)
T ss_pred ---------cccccHHHHHHhCcc-cc-chHHHHHHHHh
Confidence 236899999998898 64 88998887764
|
|
| >KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-27 Score=218.42 Aligned_cols=144 Identities=28% Similarity=0.410 Sum_probs=136.1
Q ss_pred ccCCCcchhhHhhhCCCccchhhcccccchhHHHHHHHHHHHHHHHHhCchhHHHhHHHHHHHHHHHHHhhcccccccCC
Q 010005 366 SRDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAAKFLLLLSAVLFGYGILPSNIFGF 445 (520)
Q Consensus 366 ~~~~~~~~~~~~~lg~G~~a~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 445 (520)
.+.+.|+.++++.+|+|+++|+++|||+|.|++++.+++++|.+|+..+|+++|++|+++++++.++|+|+++ ..++++
T Consensus 25 ~rlf~~~~~v~~~lg~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~-~~~~~k 103 (230)
T KOG1792|consen 25 SRLFGREGPVHKVLGGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKA-VTFLNK 103 (230)
T ss_pred ccccCCCccccccCCCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHhc
Confidence 4568899999999999999999999999999999999999999999999999999999999999999999999 688887
Q ss_pred -CCC--CCCCCceEeChhHHHHHHHHHHHHHHhHHHHHHhhhcCCChhHHHHHHHHHHHHhcCCccCcccccc
Q 010005 446 -NVK--RISPSCFELSETVIKDSIARIAFLWNMGFRNIRLLAKGDDWNTFFKVCSAYYIKVSRTHLPGNFYDN 515 (520)
Q Consensus 446 -~~~--~~p~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~g~~~~~f~~v~~~l~~~~~~~~~~~~~~~~ 515 (520)
+.| .+|. .++||||.+.+.+.+++.++|++++.+|+||+|+|++.|+|++++||++ +..||+|..
T Consensus 104 ~~~~~~~lp~-~i~ipee~~~~~a~~~~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~l----S~vGs~fn~ 171 (230)
T KOG1792|consen 104 KSEPGAYLPV-EITIPEEFVLALASSLRVEINQALSELRDIALGRDLKDFLKVAVGLWIL----SYVGSLFNF 171 (230)
T ss_pred CCCccccCCc-eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH----HHHHHhhhH
Confidence 777 7884 5999999999999999999999999999999999999999999999999 778888764
|
|
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-25 Score=205.94 Aligned_cols=307 Identities=19% Similarity=0.223 Sum_probs=229.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC--CCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN--SLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~--~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
+-.+-|.|||||+|++++.+|.+.| .+|++ -.|.... ..++-...-.++-+...|++|+++++++++..
T Consensus 61 GiVaTVFGAtGFlGryvvnklak~G-SQvii--------PyR~d~~~~r~lkvmGdLGQvl~~~fd~~DedSIr~vvk~s 131 (391)
T KOG2865|consen 61 GIVATVFGATGFLGRYVVNKLAKMG-SQVII--------PYRGDEYDPRHLKVMGDLGQVLFMKFDLRDEDSIRAVVKHS 131 (391)
T ss_pred ceEEEEecccccccHHHHHHHhhcC-CeEEE--------eccCCccchhheeecccccceeeeccCCCCHHHHHHHHHhC
Confidence 3457889999999999999999999 58888 4554331 12222223356788999999999999999999
Q ss_pred CEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHH
Q 010005 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKA 165 (520)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~ 165 (520)
.+|||+.|.+....++ ...++|+.+.++++..|++.||.|||+.|+..+ .....+-|-.+|+
T Consensus 132 NVVINLIGrd~eTknf-~f~Dvn~~~aerlAricke~GVerfIhvS~Lga-----------------nv~s~Sr~LrsK~ 193 (391)
T KOG2865|consen 132 NVVINLIGRDYETKNF-SFEDVNVHIAERLARICKEAGVERFIHVSCLGA-----------------NVKSPSRMLRSKA 193 (391)
T ss_pred cEEEEeeccccccCCc-ccccccchHHHHHHHHHHhhChhheeehhhccc-----------------cccChHHHHHhhh
Confidence 9999999986655555 578999999999999999999999999998763 1233467899999
Q ss_pred HHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCC-cccccccHHHHHHHHHHHHHhhhcc
Q 010005 166 QAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGE-NMSDFTYVENVAHAHVCAAEALDSR 244 (520)
Q Consensus 166 ~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~-~~~~~i~v~Dva~ai~~~~~~~~~~ 244 (520)
.+|..++.... +.+|+||+.+||..|+ +++.+....++=.++++++.|+ ..-+.+||-|||.+|+.+++
T Consensus 194 ~gE~aVrdafP----eAtIirPa~iyG~eDr-fln~ya~~~rk~~~~pL~~~GekT~K~PVyV~DVaa~IvnAvk----- 263 (391)
T KOG2865|consen 194 AGEEAVRDAFP----EATIIRPADIYGTEDR-FLNYYASFWRKFGFLPLIGKGEKTVKQPVYVVDVAAAIVNAVK----- 263 (391)
T ss_pred hhHHHHHhhCC----cceeechhhhcccchh-HHHHHHHHHHhcCceeeecCCcceeeccEEEehHHHHHHHhcc-----
Confidence 99999999765 4799999999999874 4455555555556678888874 45689999999999999998
Q ss_pred cccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhcc-c
Q 010005 245 MVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASR-T 323 (520)
Q Consensus 245 ~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 323 (520)
.+...|++|-..++..++..|+++.+-+...+-...++.|.+.....+...+.+- .+. ....++..+++..+.- +
T Consensus 264 Dp~s~Gktye~vGP~~yql~eLvd~my~~~~~~~ry~r~~mP~f~a~a~~~~f~~--~pf--~~~~pln~d~ie~~~v~~ 339 (391)
T KOG2865|consen 264 DPDSMGKTYEFVGPDRYQLSELVDIMYDMAREWPRYVRLPMPIFKAMAAARDFMI--VPF--PPPSPLNRDQIERLTVTD 339 (391)
T ss_pred CccccCceeeecCCchhhHHHHHHHHHHHHhhccccccCCcHHHHHHHhhhheee--cCC--CCCCCCCHHHhhheeehh
Confidence 6788999999999999999999999998887755555666555544444433321 111 1122467777765542 3
Q ss_pred eEechHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Q 010005 324 RTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSH 356 (520)
Q Consensus 324 ~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~ 356 (520)
...+...-.++||.+++ ++|..--+.+..|+.
T Consensus 340 ~vlt~~~tleDLgv~~t-~le~~~~e~l~~yR~ 371 (391)
T KOG2865|consen 340 LVLTGAPTLEDLGVVLT-KLELYPVEFLRQYRK 371 (391)
T ss_pred hhcCCCCcHhhcCceee-ecccccHHHHHHHhh
Confidence 44556666677999974 777654444443443
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=234.81 Aligned_cols=199 Identities=18% Similarity=0.141 Sum_probs=152.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCEE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~V 88 (520)
||||||||+||||++++++|+++| ++|+++|+.. .. ...++++++.+|++|.. +.+++.++|+|
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G-~~Vi~ldr~~--------~~------~~~~~ve~v~~Dl~d~~-l~~al~~~D~V 64 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAG-HTVSGIAQHP--------HD------ALDPRVDYVCASLRNPV-LQELAGEADAV 64 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEEEEeCCh--------hh------cccCCceEEEccCCCHH-HHHHhcCCCEE
Confidence 589999999999999999999999 5999965432 11 01236789999999985 78888999999
Q ss_pred EEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHH
Q 010005 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAE 168 (520)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E 168 (520)
||+|+.... ....+|+.|+.|++++|++.|+ |+||+||. ||.. + .|. .+|
T Consensus 65 IHLAa~~~~-----~~~~vNv~Gt~nLleAA~~~Gv-RiV~~SS~--~G~~--------~----------~~~----~aE 114 (699)
T PRK12320 65 IHLAPVDTS-----APGGVGITGLAHVANAAARAGA-RLLFVSQA--AGRP--------E----------LYR----QAE 114 (699)
T ss_pred EEcCccCcc-----chhhHHHHHHHHHHHHHHHcCC-eEEEEECC--CCCC--------c----------ccc----HHH
Confidence 999986321 1235899999999999999998 79999986 3310 0 121 367
Q ss_pred HHHHHhcCCCCceEEEEecCccccCCCCC----chHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcc
Q 010005 169 ALVLFANNIDGLLTCALRPSNVFGPGDTQ----LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSR 244 (520)
Q Consensus 169 ~~~~~~~~~~gi~~~ilRp~~vyGp~~~~----~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~ 244 (520)
.++.. ++++++++|++++|||+... ++..++.....++++ .++||+|++++++.+++
T Consensus 115 ~ll~~----~~~p~~ILR~~nVYGp~~~~~~~r~I~~~l~~~~~~~pI----------~vIyVdDvv~alv~al~----- 175 (699)
T PRK12320 115 TLVST----GWAPSLVIRIAPPVGRQLDWMVCRTVATLLRSKVSARPI----------RVLHLDDLVRFLVLALN----- 175 (699)
T ss_pred HHHHh----cCCCEEEEeCceecCCCCcccHhHHHHHHHHHHHcCCce----------EEEEHHHHHHHHHHHHh-----
Confidence 77654 46899999999999997653 344444444444443 34899999999999887
Q ss_pred cccCCCceEEEeCCCCcCHHHHHHHHHHHc
Q 010005 245 MVSVAGMAFFITNLEPIKFWDFLSIILEGL 274 (520)
Q Consensus 245 ~~~~~g~~yni~~~~~~t~~el~~~i~~~~ 274 (520)
... +++|||++++.+|+.|+++.+....
T Consensus 176 -~~~-~GiyNIG~~~~~Si~el~~~i~~~~ 203 (699)
T PRK12320 176 -TDR-NGVVDLATPDTTNVVTAWRLLRSVD 203 (699)
T ss_pred -CCC-CCEEEEeCCCeeEHHHHHHHHHHhC
Confidence 222 3499999999999999999997763
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-26 Score=223.17 Aligned_cols=214 Identities=23% Similarity=0.217 Sum_probs=133.5
Q ss_pred EEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCC----CCC----CCC-----C---CCCCcEEEEecCCCH
Q 010005 13 VLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESN----SLL----PDS-----L---SSGRAEYHQVDVRDI 75 (520)
Q Consensus 13 VtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~----~~l----~~~-----~---~~~~v~~~~~Dl~d~ 75 (520)
|||||||+|++|+++|++++. .+|++ +.|..+. ..+ .+. . ...+++.+.||++++
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~c--------LvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~ 72 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYC--------LVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQP 72 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEE--------EE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSG
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEE--------EEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEecccccc
Confidence 799999999999999999984 28999 4554321 011 110 1 156899999999884
Q ss_pred ------HHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCC----
Q 010005 76 ------SQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHN---- 145 (520)
Q Consensus 76 ------~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~---- 145 (520)
+.+.++.+.+|+|||+||......+.+...++|+.||+++++.|.+.+.++|+|+||+.+.+........
T Consensus 73 ~lGL~~~~~~~L~~~v~~IiH~Aa~v~~~~~~~~~~~~NV~gt~~ll~la~~~~~~~~~~iSTa~v~~~~~~~~~~~~~~ 152 (249)
T PF07993_consen 73 NLGLSDEDYQELAEEVDVIIHCAASVNFNAPYSELRAVNVDGTRNLLRLAAQGKRKRFHYISTAYVAGSRPGTIEEKVYP 152 (249)
T ss_dssp GGG--HHHHHHHHHH--EEEE--SS-SBS-S--EEHHHHHHHHHHHHHHHTSSS---EEEEEEGGGTTS-TTT--SSS-H
T ss_pred ccCCChHHhhccccccceeeecchhhhhcccchhhhhhHHHHHHHHHHHHHhccCcceEEeccccccCCCCCcccccccc
Confidence 5677777899999999999666678888999999999999999998887799999995555433321100
Q ss_pred CCC-CccCCCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC------C-chHHHHHHhcCCCceEEecC
Q 010005 146 GDE-TLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------Q-LVPLLVNLAKPGWTKFIIGS 217 (520)
Q Consensus 146 ~~E-~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~------~-~~~~l~~~~~~g~~~~i~g~ 217 (520)
.++ +........+.|+.||+.+|++++++.++.|++++|+||+.|+|.... . ....+...+..|.....+++
T Consensus 153 ~~~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~ 232 (249)
T PF07993_consen 153 EEEDDLDPPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGDSRTGWWNSDDFFPYLLRSCIALGAFPDLPGD 232 (249)
T ss_dssp HH--EEE--TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-SSSSS---TTBHHHHHHHHHHHH-EEES-SB-
T ss_pred cccccchhhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccccCCCceeeccchHHHHHHHHHHcCCcccccCC
Confidence 111 111234556799999999999999998867999999999999994322 2 33344555555654446666
Q ss_pred CCcccccccHHHHHHHH
Q 010005 218 GENMSDFTYVENVAHAH 234 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai 234 (520)
.+...|+++||.+|++|
T Consensus 233 ~~~~~d~vPVD~va~aI 249 (249)
T PF07993_consen 233 PDARLDLVPVDYVARAI 249 (249)
T ss_dssp --TT--EEEHHHHHHHH
T ss_pred CCceEeEECHHHHHhhC
Confidence 67789999999999986
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=251.87 Aligned_cols=264 Identities=20% Similarity=0.148 Sum_probs=188.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcC---CcEEEEecCCcccccCCCCCCC----CCC---------CCCCCCCcEEEEe
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNS----LLP---------DSLSSGRAEYHQV 70 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g---~~~V~~~D~~~~~~l~r~~~~~----~l~---------~~~~~~~v~~~~~ 70 (520)
..++|+||||+||+|+++++.|++++ .++|+++ .|..... .+. ......+++++.+
T Consensus 970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l--------~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~g 1041 (1389)
T TIGR03443 970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAH--------VRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLG 1041 (1389)
T ss_pred CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEE--------ECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEec
Confidence 35899999999999999999999886 3478884 4432210 000 0001236889999
Q ss_pred cCCC------HHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCC---
Q 010005 71 DVRD------ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSH--- 141 (520)
Q Consensus 71 Dl~d------~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~--- 141 (520)
|+.+ .+.+.++.+++|+|||+|+..............|+.|+.+++++|++.++++|+|+||.++|+....
T Consensus 1042 Dl~~~~lgl~~~~~~~l~~~~d~iiH~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS~~v~~~~~~~~~ 1121 (1389)
T TIGR03443 1042 DLSKEKFGLSDEKWSDLTNEVDVIIHNGALVHWVYPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSSTSALDTEYYVNL 1121 (1389)
T ss_pred cCCCccCCcCHHHHHHHHhcCCEEEECCcEecCccCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeCeeecCcccccch
Confidence 9974 4567777889999999999855445566666789999999999999999999999999999964210
Q ss_pred -------CCCCCCCCccC---CCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCC------chHHHHHH
Q 010005 142 -------DIHNGDETLTC---CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ------LVPLLVNL 205 (520)
Q Consensus 142 -------~~~~~~E~~~~---~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~------~~~~l~~~ 205 (520)
+.....|+.+. +..+.+.|+.||+.+|.++..+.+ .|++++++||+.|||++... ++..++..
T Consensus 1122 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~-~g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~ 1200 (1389)
T TIGR03443 1122 SDELVQAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGK-RGLRGCIVRPGYVTGDSKTGATNTDDFLLRMLKG 1200 (1389)
T ss_pred hhhhhhccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHh-CCCCEEEECCCccccCCCcCCCCchhHHHHHHHH
Confidence 11123343321 223457899999999999998876 59999999999999987542 23333332
Q ss_pred hcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCCh
Q 010005 206 AKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPT 285 (520)
Q Consensus 206 ~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~ 285 (520)
...- ...+++...++|++|+|++++++.++... .....+.+||++++..+++.++++.+.+. |++.+.++.+.
T Consensus 1201 ~~~~---~~~p~~~~~~~~~~Vddva~ai~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~ 1273 (1389)
T TIGR03443 1201 CIQL---GLIPNINNTVNMVPVDHVARVVVAAALNP---PKESELAVAHVTGHPRIRFNDFLGTLKTY-GYDVEIVDYVH 1273 (1389)
T ss_pred HHHh---CCcCCCCCccccccHHHHHHHHHHHHhCC---cccCCCCEEEeCCCCCCcHHHHHHHHHHh-CCCCCccCHHH
Confidence 2221 12335566789999999999999988621 01134568999998899999999999764 66655444443
Q ss_pred H
Q 010005 286 G 286 (520)
Q Consensus 286 ~ 286 (520)
|
T Consensus 1274 w 1274 (1389)
T TIGR03443 1274 W 1274 (1389)
T ss_pred H
Confidence 3
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-22 Score=185.38 Aligned_cols=317 Identities=17% Similarity=0.148 Sum_probs=221.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCccc-ccCCCCCCCCCCCCC--CCCCcEEEEecCCCHHHHHHHHc--
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSL-QLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~-~l~r~~~~~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
+..||||-+|.=|++|++.|+.+| |+|.++-+..+. +..|-+ ....++. .......+.+|++|...+.+++.
T Consensus 29 kvALITGItGQDGSYLaEfLL~Kg-YeVHGiiRRsSsFNT~RIe--HlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~i 105 (376)
T KOG1372|consen 29 KVALITGITGQDGSYLAEFLLSKG-YEVHGIIRRSSSFNTARIE--HLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTI 105 (376)
T ss_pred eEEEEecccCCCchHHHHHHHhCC-ceeeEEEeeccccchhhhh--hhhcCchhcccceeEEeeccccchHHHHHHHhcc
Confidence 467999999999999999999999 799984322211 011110 0111111 12456789999999999999997
Q ss_pred CCCEEEEcccC---CCCCcchhhHHhhhHHHHHHHHHHHHHCCC---CEEEEeecccccccCCCCCCCCCCCccCCCCCC
Q 010005 84 GASTVFYVDAT---DLNTDDFYNCYMIIVQGAKNVVTACRECKV---RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQ 157 (520)
Q Consensus 84 ~~D~Vih~aa~---~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gv---kr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~ 157 (520)
+++-|+|+|++ ..+-.-++.+.++...||.+|++|.+.++. -||..+||...|| .....|..|.+ |..|.
T Consensus 106 kPtEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyG--kv~e~PQsE~T--PFyPR 181 (376)
T KOG1372|consen 106 KPTEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYG--KVQEIPQSETT--PFYPR 181 (376)
T ss_pred CchhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcc--cccCCCcccCC--CCCCC
Confidence 57999999998 234455777889999999999999999862 2899999999995 34456888888 66999
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCceEEEEecCcccc---CCCC-CchHH-H---HHHhc-CCCceEEecCCCcccccccHH
Q 010005 158 DLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFG---PGDT-QLVPL-L---VNLAK-PGWTKFIIGSGENMSDFTYVE 228 (520)
Q Consensus 158 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyG---p~~~-~~~~~-l---~~~~~-~g~~~~i~g~g~~~~~~i~v~ 228 (520)
++|+.+|..+--++..|...+++-.| .|..|. |+.. +++.. + +..+. .......+|+-+..+||-|..
T Consensus 182 SPYa~aKmy~~WivvNyREAYnmfAc---NGILFNHESPRRGenFVTRKItRsvakI~~gqqe~~~LGNL~a~RDWGhA~ 258 (376)
T KOG1372|consen 182 SPYAAAKMYGYWIVVNYREAYNMFAC---NGILFNHESPRRGENFVTRKITRSVAKISLGQQEKIELGNLSALRDWGHAG 258 (376)
T ss_pred ChhHHhhhhheEEEEEhHHhhcceee---ccEeecCCCCccccchhhHHHHHHHHHhhhcceeeEEecchhhhcccchhH
Confidence 99999999887777677666666444 344454 4322 23222 2 22222 233346678888999999999
Q ss_pred HHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCC----cccCChHHHHHHHHHHHHHHHHhcc
Q 010005 229 NVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP----FIKLPTGVVWYIILLVKWIHEKLGL 304 (520)
Q Consensus 229 Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~----~v~~p~~~~~~~~~~~~~~~~~~~~ 304 (520)
|-++|+..+++ . ...+-|-|+.++..+++||.+..-..+|.... -+..- -.+-.|.
T Consensus 259 dYVEAMW~mLQ------~-d~PdDfViATge~hsVrEF~~~aF~~ig~~l~Weg~gv~~~-------------~~n~~g~ 318 (376)
T KOG1372|consen 259 DYVEAMWLMLQ------Q-DSPDDFVIATGEQHSVREFCNLAFAEIGEVLNWEGEGVDEV-------------GKNDDGV 318 (376)
T ss_pred HHHHHHHHHHh------c-CCCCceEEecCCcccHHHHHHHHHHhhCcEEeecccccccc-------------cccCCce
Confidence 99999999998 2 22347899999999999999987777774311 00000 0000000
Q ss_pred --cccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 305 --RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 305 --~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
-..+...++|..+..+ .-|.+|+++.|||+|++++.|-+++++..-.+..+
T Consensus 319 v~V~v~~kYyRPtEVd~L----qGdasKAk~~LgW~pkv~f~eLVkeMv~~DieLm~ 371 (376)
T KOG1372|consen 319 VRVKVDPKYYRPTEVDTL----QGDASKAKKTLGWKPKVTFPELVKEMVASDIELMK 371 (376)
T ss_pred EEEEecccccCcchhhhh----cCChHHHHHhhCCCCccCHHHHHHHHHHhHHHHHh
Confidence 0012334566666543 35899999999999999999999999987666544
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-22 Score=201.08 Aligned_cols=227 Identities=19% Similarity=0.128 Sum_probs=164.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
.|++|||||+|+||++++++|+++| ++|+++ .|+... ..+... ...++.++.+|++|.+++.++++
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g-~~v~~~--------~r~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~ 71 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARG-DRVAAT--------VRRPDALDDLKAR-YGDRLWVLQLDVTDSAAVRAVVDRAF 71 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCC-CEEEEE--------eCCHHHHHHHHHh-ccCceEEEEccCCCHHHHHHHHHHHH
Confidence 4789999999999999999999999 589884 444321 011111 12367889999999988877664
Q ss_pred ----CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCCCC
Q 010005 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
++|+|||+||... ...++...+++|+.++.++++++ ++.+.+++|++||.....
T Consensus 72 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~----------- 140 (276)
T PRK06482 72 AALGRIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQI----------- 140 (276)
T ss_pred HHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCccccc-----------
Confidence 4799999999721 12345678889999999999997 666778999999975431
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCcc---ccCCCCC----------chHHHHHHhcCCCce
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNV---FGPGDTQ----------LVPLLVNLAKPGWTK 212 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v---yGp~~~~----------~~~~l~~~~~~g~~~ 212 (520)
+..+.+.|+.+|+..|.+++.++.+ +|++++++||+.+ ||++... ....+.+....+.
T Consensus 141 ----~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 214 (276)
T PRK06482 141 ----AYPGFSLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRRALADGS-- 214 (276)
T ss_pred ----CCCCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCcccccccCCCccccchhhHHHHHHHhhcc--
Confidence 1234678999999999998887654 6999999999988 6654321 1112222222221
Q ss_pred EEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcC
Q 010005 213 FIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLG 275 (520)
Q Consensus 213 ~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g 275 (520)
..-+.+++|++++++.+++ ....+..||+++++..+.+|.++.+.+.++
T Consensus 215 --------~~~~~d~~~~~~a~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 263 (276)
T PRK06482 215 --------FAIPGDPQKMVQAMIASAD------QTPAPRRLTLGSDAYASIRAALSERLAALE 263 (276)
T ss_pred --------CCCCCCHHHHHHHHHHHHc------CCCCCeEEecChHHHHHHHHHHHHHHHHHH
Confidence 1123568999999999887 334456799999988888888887777663
|
|
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-23 Score=204.21 Aligned_cols=251 Identities=22% Similarity=0.184 Sum_probs=180.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC----CCCCC---------CCCCCCCcEEEEecCCC-
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES----NSLLP---------DSLSSGRAEYHQVDVRD- 74 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~----~~~l~---------~~~~~~~v~~~~~Dl~d- 74 (520)
+++|+||||||+|+++++.|+.+-+-+|+| +.|..+ ...+. ++....+++.+.+|+..
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~c--------LVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~ 72 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVIC--------LVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEP 72 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEE--------EEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccc
Confidence 579999999999999999999986558998 555443 11111 22335789999999984
Q ss_pred -----HHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCC--CC
Q 010005 75 -----ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHN--GD 147 (520)
Q Consensus 75 -----~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~--~~ 147 (520)
...+.++.+.+|.|||+||.-....++.+....||.||..+++.|...+.|.+.|+||.+|+......... .+
T Consensus 73 ~lGL~~~~~~~La~~vD~I~H~gA~Vn~v~pYs~L~~~NVlGT~evlrLa~~gk~Kp~~yVSsisv~~~~~~~~~~~~~~ 152 (382)
T COG3320 73 DLGLSERTWQELAENVDLIIHNAALVNHVFPYSELRGANVLGTAEVLRLAATGKPKPLHYVSSISVGETEYYSNFTVDFD 152 (382)
T ss_pred cCCCCHHHHHHHhhhcceEEecchhhcccCcHHHhcCcchHhHHHHHHHHhcCCCceeEEEeeeeeccccccCCCccccc
Confidence 45678888889999999999777788999999999999999999999999999999999998543322222 22
Q ss_pred CCccC---CCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC------CchHHHHHH-hcCCCceEEecC
Q 010005 148 ETLTC---CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNL-AKPGWTKFIIGS 217 (520)
Q Consensus 148 E~~~~---~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~------~~~~~l~~~-~~~g~~~~i~g~ 217 (520)
|+.|. ...+.++|++||+.+|.++++..+. |++++|+|||.|-|+... .++..++.. +..|. ..+
T Consensus 153 ~~~~~~~~~~~~~~GY~~SKwvaE~Lvr~A~~r-GLpv~I~Rpg~I~gds~tG~~n~~D~~~Rlv~~~~~lg~----~P~ 227 (382)
T COG3320 153 EISPTRNVGQGLAGGYGRSKWVAEKLVREAGDR-GLPVTIFRPGYITGDSRTGALNTRDFLTRLVLGLLQLGI----APD 227 (382)
T ss_pred cccccccccCccCCCcchhHHHHHHHHHHHhhc-CCCeEEEecCeeeccCccCccccchHHHHHHHHHHHhCC----CCC
Confidence 22221 2346789999999999999999885 999999999999998663 233344433 33333 233
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcc------cccCCCceEE-EeCCCCcCHHHHHHHHHH
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSR------MVSVAGMAFF-ITNLEPIKFWDFLSIILE 272 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~------~~~~~g~~yn-i~~~~~~t~~el~~~i~~ 272 (520)
.....+.+.++++++++......+... ++......|+ ..-+..++..++.+.+.+
T Consensus 228 ~~~~~~~~p~~~v~~~v~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~i~l~~~~~w~~~ 289 (382)
T COG3320 228 SEYSLDMLPVDHVARAVVAPSVQVAEAIAALGAHSDIRFNQLHMLTHPDEIGLDEYVDWLIS 289 (382)
T ss_pred cccchhhCccceeeEEeehhhhhHHHHHHHhccCccchhhheecccCCCccchhHHHHhHhh
Confidence 455567777777777665544432200 1222234455 223677999999998887
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6e-22 Score=193.65 Aligned_cols=229 Identities=18% Similarity=0.157 Sum_probs=161.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC-CCCCcEEEEecCCC-HHHHHHHH-c
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRD-ISQIKKVL-E 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~-~~~~v~~~~~Dl~d-~~~l~~~l-~ 83 (520)
.+|+|+||||+|+||+++++.|+++| ++|++ +.|++++. .... ...+++++.+|+.| .+.+.+.+ .
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g-~~V~~--------~~R~~~~~--~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~ 84 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKG-FAVKA--------GVRDVDKA--KTSLPQDPSLQIVRADVTEGSDKLVEAIGD 84 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCC-CEEEE--------EecCHHHH--HHhcccCCceEEEEeeCCCCHHHHHHHhhc
Confidence 46899999999999999999999999 59998 45544311 1111 12468899999998 46777888 6
Q ss_pred CCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHH
Q 010005 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (520)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~s 163 (520)
++|+|||+++.... .++...++.|..++.++++++++.+++|+||+||.++||..... +.++.. ...++...|..+
T Consensus 85 ~~d~vi~~~g~~~~-~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~~v~g~~~~~--~~~~~~-~~~~~~~~~~~~ 160 (251)
T PLN00141 85 DSDAVICATGFRRS-FDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSILVNGAAMGQ--ILNPAY-IFLNLFGLTLVA 160 (251)
T ss_pred CCCEEEECCCCCcC-CCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccccccCCCccc--ccCcch-hHHHHHHHHHHH
Confidence 89999999886322 22334567899999999999999999999999999998643211 111110 011222334567
Q ss_pred HHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhc
Q 010005 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (520)
Q Consensus 164 K~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~ 243 (520)
|..+|++++. .|++++++||+.++++... +.. ...........+++.+|+|+++..+++
T Consensus 161 k~~~e~~l~~----~gi~~~iirpg~~~~~~~~------------~~~-~~~~~~~~~~~~i~~~dvA~~~~~~~~---- 219 (251)
T PLN00141 161 KLQAEKYIRK----SGINYTIVRPGGLTNDPPT------------GNI-VMEPEDTLYEGSISRDQVAEVAVEALL---- 219 (251)
T ss_pred HHHHHHHHHh----cCCcEEEEECCCccCCCCC------------ceE-EECCCCccccCcccHHHHHHHHHHHhc----
Confidence 8888887765 5899999999999976421 111 111111223468999999999999987
Q ss_pred ccccCCCceEEEeCC---CCcCHHHHHHHHHH
Q 010005 244 RMVSVAGMAFFITNL---EPIKFWDFLSIILE 272 (520)
Q Consensus 244 ~~~~~~g~~yni~~~---~~~t~~el~~~i~~ 272 (520)
.+...+.++.+.+. ...++.++...+++
T Consensus 220 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (251)
T PLN00141 220 -CPESSYKVVEIVARADAPKRSYKDLFASIKQ 250 (251)
T ss_pred -ChhhcCcEEEEecCCCCCchhHHHHHHHhhc
Confidence 34555678888763 24888988887754
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-22 Score=181.41 Aligned_cols=305 Identities=12% Similarity=0.097 Sum_probs=231.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhc-CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~-g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
.+..|||||||-|.+|..++..|..+ |...|+..|+.. ++.. .+ ..-.++..|+.|...+++++-
T Consensus 42 ~~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~K-----Pp~~--V~------~~GPyIy~DILD~K~L~eIVVn 108 (366)
T KOG2774|consen 42 QKAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVK-----PPAN--VT------DVGPYIYLDILDQKSLEEIVVN 108 (366)
T ss_pred CCCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccC-----Cchh--hc------ccCCchhhhhhccccHHHhhcc
Confidence 35679999999999999999999876 756799877632 2211 11 134688999999999999885
Q ss_pred -CCCEEEEcccC--CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChH
Q 010005 84 -GASTVFYVDAT--DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLM 160 (520)
Q Consensus 84 -~~D~Vih~aa~--~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y 160 (520)
..|..||+.|. ...+.+-....++|+.|..|+++.|++++. ++..-|+.+++|+.+... |...- ....|.+.|
T Consensus 109 ~RIdWL~HfSALLSAvGE~NVpLA~~VNI~GvHNil~vAa~~kL-~iFVPSTIGAFGPtSPRN-PTPdl--tIQRPRTIY 184 (366)
T KOG2774|consen 109 KRIDWLVHFSALLSAVGETNVPLALQVNIRGVHNILQVAAKHKL-KVFVPSTIGAFGPTSPRN-PTPDL--TIQRPRTIY 184 (366)
T ss_pred cccceeeeHHHHHHHhcccCCceeeeecchhhhHHHHHHHHcCe-eEeecccccccCCCCCCC-CCCCe--eeecCceee
Confidence 58999999998 556677788999999999999999999998 677789999998765432 12111 156899999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEecCccccC---CCC---CchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHH
Q 010005 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGP---GDT---QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234 (520)
Q Consensus 161 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp---~~~---~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai 234 (520)
|.||+.+|-+-+.+..+.|+++-++|++.+... |.. ..+..+..+.++|+.-+.. ..+...+++|.+|+-+++
T Consensus 185 GVSKVHAEL~GEy~~hrFg~dfr~~rfPg~is~~~pgggttdya~A~f~~Al~~gk~tCyl-rpdtrlpmmy~~dc~~~~ 263 (366)
T KOG2774|consen 185 GVSKVHAELLGEYFNHRFGVDFRSMRFPGIISATKPGGGTTDYAIAIFYDALQKGKHTCYL-RPDTRLPMMYDTDCMASV 263 (366)
T ss_pred chhHHHHHHHHHHHHhhcCccceecccCcccccCCCCCCcchhHHHHHHHHHHcCCccccc-CCCccCceeehHHHHHHH
Confidence 999999999999999999999999998888864 221 3566777888888874444 457778999999999999
Q ss_pred HHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchH
Q 010005 235 VCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSAC 314 (520)
Q Consensus 235 ~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (520)
+..+.+. .+....++||+++ -..|..|+++.+.+.+..- .+.+. +-+.
T Consensus 264 ~~~~~a~---~~~lkrr~ynvt~-~sftpee~~~~~~~~~p~~----~i~y~------------------------~~sr 311 (366)
T KOG2774|consen 264 IQLLAAD---SQSLKRRTYNVTG-FSFTPEEIADAIRRVMPGF----EIDYD------------------------ICTR 311 (366)
T ss_pred HHHHhCC---HHHhhhheeeece-eccCHHHHHHHHHhhCCCc----eeecc------------------------cchh
Confidence 9888753 3456678999998 7799999999998877431 11110 0000
Q ss_pred HHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhcc
Q 010005 315 YIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDS 361 (520)
Q Consensus 315 ~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~~ 361 (520)
..-.-.++..+|.+.+++++.|+-++.+...+.-+++-.+++....
T Consensus 312 -q~iad~wp~~~dds~ar~~wh~~h~~~l~~~i~~~i~~~~~n~~~~ 357 (366)
T KOG2774|consen 312 -QSIADSWPMSLDDSEARTEWHEKHSLHLLSIISTVVAVHKSNLKLL 357 (366)
T ss_pred -hhhhhhcccccCchhHhhHHHHhhhhhHHHHHHHHHHHHHhhhhhc
Confidence 1111134678899999999999998888888877777777765543
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=181.25 Aligned_cols=182 Identities=32% Similarity=0.363 Sum_probs=144.2
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCEEEE
Q 010005 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTVFY 90 (520)
Q Consensus 11 ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~Vih 90 (520)
|+|+||||++|+.++++|+++| ++|++ +.|++.+ ..+ .++++.+.+|+.|++++.++++++|+|||
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~--------~~R~~~~--~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~ 66 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTA--------LVRSPSK--AED---SPGVEIIQGDLFDPDSVKAALKGADAVIH 66 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEE--------EESSGGG--HHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEE
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEE--------EecCchh--ccc---ccccccceeeehhhhhhhhhhhhcchhhh
Confidence 7999999999999999999999 59999 6777652 111 57899999999999999999999999999
Q ss_pred cccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHH
Q 010005 91 VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEAL 170 (520)
Q Consensus 91 ~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~ 170 (520)
+++.... +...+++++++|+++|++|+|++||.++|+...... .++. ......|...|..+|+.
T Consensus 67 ~~~~~~~----------~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~e~~ 130 (183)
T PF13460_consen 67 AAGPPPK----------DVDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPGLF--SDED----KPIFPEYARDKREAEEA 130 (183)
T ss_dssp CCHSTTT----------HHHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTSEE--EGGT----CGGGHHHHHHHHHHHHH
T ss_pred hhhhhcc----------cccccccccccccccccccceeeeccccCCCCCccc--cccc----ccchhhhHHHHHHHHHH
Confidence 9986332 278889999999999999999999999986332210 0111 11125788999999988
Q ss_pred HHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHH
Q 010005 171 VLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 171 ~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~ 239 (520)
+.. .+++++++||+.+||+.... . .....++....++|+++|+|++++.+++
T Consensus 131 ~~~----~~~~~~ivrp~~~~~~~~~~------------~-~~~~~~~~~~~~~i~~~DvA~~~~~~l~ 182 (183)
T PF13460_consen 131 LRE----SGLNWTIVRPGWIYGNPSRS------------Y-RLIKEGGPQGVNFISREDVAKAIVEALE 182 (183)
T ss_dssp HHH----STSEEEEEEESEEEBTTSSS------------E-EEESSTSTTSHCEEEHHHHHHHHHHHHH
T ss_pred HHh----cCCCEEEEECcEeEeCCCcc------------e-eEEeccCCCCcCcCCHHHHHHHHHHHhC
Confidence 864 58999999999999986321 1 1222245666799999999999998886
|
... |
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-21 Score=192.79 Aligned_cols=229 Identities=15% Similarity=0.167 Sum_probs=159.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHH
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
.++++++|||||+|+||+++++.|+++| ++|+++++ ++... ...+.+ ...++.++++|++|.+++.++
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G-~~v~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 74 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAG-AAVAIADL--------NQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAG 74 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEeC--------ChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHH
Confidence 3457899999999999999999999999 58988443 33200 000000 123467799999999988877
Q ss_pred Hc-------CCCEEEEcccCCC-------CCcchhhHHhhhHHH----HHHHHHHH-HHCCCCEEEEeecccccccCCCC
Q 010005 82 LE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQG----AKNVVTAC-RECKVRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 82 l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~g----t~~ll~aa-~~~gvkr~V~~SS~~vyg~~~~~ 142 (520)
++ ++|+|||+|+... ....++..+++|+.+ +.++++++ ++.+.+++|++||...+.
T Consensus 75 ~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~~----- 149 (262)
T PRK13394 75 IDKVAERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHE----- 149 (262)
T ss_pred HHHHHHHcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhcC-----
Confidence 65 3899999998721 223456678899999 77777777 777789999999975431
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCC---CceEEec
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPG---WTKFIIG 216 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g---~~~~i~g 216 (520)
+..+.+.|+.+|...|.+++.++.+ .+++++++||+.+++|......+......... ....+++
T Consensus 150 ----------~~~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (262)
T PRK13394 150 ----------ASPLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVML 219 (262)
T ss_pred ----------CCCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhhhhHhhhhccCCChHHHHHHHHh
Confidence 1234578999999999988877654 58999999999999986433222221110000 0001223
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
.+...++|++++|+++++..++... .....|+.|+++++..
T Consensus 220 ~~~~~~~~~~~~dva~a~~~l~~~~---~~~~~g~~~~~~~g~~ 260 (262)
T PRK13394 220 GKTVDGVFTTVEDVAQTVLFLSSFP---SAALTGQSFVVSHGWF 260 (262)
T ss_pred cCCCCCCCCCHHHHHHHHHHHcCcc---ccCCcCCEEeeCCcee
Confidence 4556678999999999999888621 1345688999987643
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=183.69 Aligned_cols=221 Identities=13% Similarity=0.097 Sum_probs=153.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCC---CCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD---SLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~---~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
+.++||||||+|+||++++++|+++| ++|+++++... .....+.. ......+.++.+|++|.+++.++++
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g-~~v~~~~r~~~------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 77 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAG-YRVAIHYHRSA------AEADALAAELNALRPGSAAALQADLLDPDALPELVA 77 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCCH------HHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHH
Confidence 45899999999999999999999999 59999554210 00000000 0012357889999999998888776
Q ss_pred -------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHC---CCCEEEEeecccccccCCCCCCCC
Q 010005 84 -------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 -------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~---gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|+|||+||.. ....+++.++++|+.++.++++++... .-.+++++|+...
T Consensus 78 ~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~----------- 146 (249)
T PRK09135 78 ACVAAFGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHA----------- 146 (249)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhh-----------
Confidence 479999999961 122346778999999999999999642 1235665554221
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCCC--CceEEEEecCccccCCCCCchHHHH-HHhcCCCceEEecCCCcccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQLVPLLV-NLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~vyGp~~~~~~~~l~-~~~~~g~~~~i~g~g~~~~~ 223 (520)
.. +..|.+.|+.+|+..|.+++.++.+. +++++++||+.++||.+...++... .....+.+. ..
T Consensus 147 --~~--~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 213 (249)
T PRK09135 147 --ER--PLKGYPVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPEDGNSFDEEARQAILARTPL---------KR 213 (249)
T ss_pred --cC--CCCCchhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCccccccCCHHHHHHHHhcCCc---------CC
Confidence 11 44677899999999999999887543 6999999999999998653333322 222222221 12
Q ss_pred cccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC
Q 010005 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t 262 (520)
+.+++|+++++..++.. .....|++||+++++.++
T Consensus 214 ~~~~~d~a~~~~~~~~~----~~~~~g~~~~i~~g~~~~ 248 (249)
T PRK09135 214 IGTPEDIAEAVRFLLAD----ASFITGQILAVDGGRSLT 248 (249)
T ss_pred CcCHHHHHHHHHHHcCc----cccccCcEEEECCCeecc
Confidence 23489999999766641 234578999999987654
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-21 Score=193.15 Aligned_cols=229 Identities=14% Similarity=0.022 Sum_probs=162.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
++++|+||||+|+||++++++|+++| ++|++++ |+.... .+.+. ....+..+.+|++|.+++.++++
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g-~~V~~~~--------r~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~ 71 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERG-DRVVATA--------RDTATLADLAEK-YGDRLLPLALDVTDRAAVFAAVETA 71 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEE--------CCHHHHHHHHHh-ccCCeeEEEccCCCHHHHHHHHHHH
Confidence 45799999999999999999999999 5899854 332210 00111 12357788999999988877665
Q ss_pred -----CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|+|||+||.. ....+++..+++|+.++.++++++ ++.+.+++|++||...+..
T Consensus 72 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~--------- 142 (275)
T PRK08263 72 VEHFGRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGISA--------- 142 (275)
T ss_pred HHHcCCCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcCC---------
Confidence 479999999972 123467788999999998888776 5667789999999877631
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCC---------chHHHHHHhcCCCceEEe
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ---------LVPLLVNLAKPGWTKFII 215 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~---------~~~~l~~~~~~g~~~~i~ 215 (520)
....+.|+.+|+..|.+.+.++.+ +|++++++||+.+..+.... ....+....
T Consensus 143 ------~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~--------- 207 (275)
T PRK08263 143 ------FPMSGIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKRATPLDAYDTLREEL--------- 207 (275)
T ss_pred ------CCCccHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCccccccccCCCchhhhhHHHHH---------
Confidence 123468999999999888777543 69999999999887754311 011111111
Q ss_pred cCCCccccc-ccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHc
Q 010005 216 GSGENMSDF-TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGL 274 (520)
Q Consensus 216 g~g~~~~~~-i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~ 274 (520)
.++.....+ +.++|++++++.+++ .+...++.++.++++.+++.++.+.+.+.-
T Consensus 208 ~~~~~~~~~~~~p~dva~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (275)
T PRK08263 208 AEQWSERSVDGDPEAAAEALLKLVD-----AENPPLRLFLGSGVLDLAKADYERRLATWE 262 (275)
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHc-----CCCCCeEEEeCchHHHHHHHHHHHHHHHHH
Confidence 111122345 889999999999998 344445544444556799999999888753
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=182.92 Aligned_cols=220 Identities=16% Similarity=0.130 Sum_probs=158.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC--CCCCC--CCCCCcEEEEecCCCHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS--LLPDS--LSSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~--~l~~~--~~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
+++|+||||||+|+||++++++|+++|+ +|+++ .|..... .+... ....++.++.+|+.|.+++.++
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~-~v~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~ 74 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGA-DVVVH--------YRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAA 74 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEE--------eCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHH
Confidence 4568999999999999999999999995 77663 3322110 00000 0124678999999999988877
Q ss_pred Hc-------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCC
Q 010005 82 LE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 82 l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~ 143 (520)
++ ++|+|||+|+... ....+...+++|+.++.++++++ ++.+++++|++||...+.
T Consensus 75 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~------ 148 (249)
T PRK12825 75 VAAAVERFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLP------ 148 (249)
T ss_pred HHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCC------
Confidence 74 5799999999621 22345678899999999999887 566788999999988762
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCc
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~ 220 (520)
+..+...|+.+|...|.++..++.+ .|++++++||+.++|+............. .+ ...
T Consensus 149 ---------~~~~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~~~~~---~~------~~~ 210 (249)
T PRK12825 149 ---------GWPGRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEATIEEAREAK---DA------ETP 210 (249)
T ss_pred ---------CCCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCccccccchhHHhh---hc------cCC
Confidence 1124568999999999888776553 68999999999999987543222111111 00 112
Q ss_pred ccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
...+++++|+++++..+++.. .....|+.|+++++.++
T Consensus 211 ~~~~~~~~dva~~~~~~~~~~---~~~~~g~~~~i~~g~~~ 248 (249)
T PRK12825 211 LGRSGTPEDIARAVAFLCSDA---SDYITGQVIEVTGGVDV 248 (249)
T ss_pred CCCCcCHHHHHHHHHHHhCcc---ccCcCCCEEEeCCCEee
Confidence 234899999999999888621 23467899999987643
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.3e-20 Score=193.93 Aligned_cols=230 Identities=20% Similarity=0.130 Sum_probs=161.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-C----CCC-----C--CCCCCcEEEEecCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-L----LPD-----S--LSSGRAEYHQVDVR 73 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~----l~~-----~--~~~~~v~~~~~Dl~ 73 (520)
+++++||||||+|+||++++++|+++| ++|++++ |+..+. . +.+ . ....+++++.+|+.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G-~~Vval~--------Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLt 148 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLG-FRVRAGV--------RSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLE 148 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CeEEEEe--------CCHHHHHHHHHHhhhhccccccccccCceEEEEecCC
Confidence 356789999999999999999999999 5999954 432210 0 000 0 01135789999999
Q ss_pred CHHHHHHHHcCCCEEEEcccCCC-CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccC
Q 010005 74 DISQIKKVLEGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC 152 (520)
Q Consensus 74 d~~~l~~~l~~~D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~ 152 (520)
|.+++.+++.++|+|||++|... ...++...+++|+.|+.+++++|++.|++|||++||.+++..+. .+.
T Consensus 149 D~esI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSiga~~~g~------p~~--- 219 (576)
T PLN03209 149 KPDQIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLGTNKVGF------PAA--- 219 (576)
T ss_pred CHHHHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhcccCc------ccc---
Confidence 99999999999999999998732 22345667899999999999999999999999999987631110 010
Q ss_pred CCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHH
Q 010005 153 CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAH 232 (520)
Q Consensus 153 ~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ 232 (520)
.......|...|..+|+.+.. .|++++++|||.++++.+... ..+. +....++......+..+|+|+
T Consensus 220 ~~~sk~~~~~~KraaE~~L~~----sGIrvTIVRPG~L~tp~d~~~--------~t~~-v~~~~~d~~~gr~isreDVA~ 286 (576)
T PLN03209 220 ILNLFWGVLCWKRKAEEALIA----SGLPYTIVRPGGMERPTDAYK--------ETHN-LTLSEEDTLFGGQVSNLQVAE 286 (576)
T ss_pred chhhHHHHHHHHHHHHHHHHH----cCCCEEEEECCeecCCccccc--------cccc-eeeccccccCCCccCHHHHHH
Confidence 112345677889999988875 699999999999998754321 1111 112112222234578999999
Q ss_pred HHHHHHHhhhcccccCCCceEEEeCCCC---cCHHHHHHHH
Q 010005 233 AHVCAAEALDSRMVSVAGMAFFITNLEP---IKFWDFLSII 270 (520)
Q Consensus 233 ai~~~~~~~~~~~~~~~g~~yni~~~~~---~t~~el~~~i 270 (520)
+++.++.. .....+++|.+.++.. .++.|+++.+
T Consensus 287 vVvfLasd----~~as~~kvvevi~~~~~p~~~~~~~~~~i 323 (576)
T PLN03209 287 LMACMAKN----RRLSYCKVVEVIAETTAPLTPMEELLAKI 323 (576)
T ss_pred HHHHHHcC----chhccceEEEEEeCCCCCCCCHHHHHHhc
Confidence 99988761 1236678999988653 4455544443
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=184.58 Aligned_cols=226 Identities=17% Similarity=0.189 Sum_probs=154.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHH--
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL-- 82 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l-- 82 (520)
++++|||||+|+||+++++.|+++| ++|++++ |++... .+...+ ...++..+.+|+.|.+++.+++
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g-~~v~~~~--------r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 71 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAG-ANVVVND--------LGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAA 71 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCC-CEEEEEe--------CCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHH
Confidence 3689999999999999999999999 5999954 432210 111100 1235788999999998665544
Q ss_pred -----cCCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCC
Q 010005 83 -----EGASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 83 -----~~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
.+.|+|||+|+... ...+.+..++.|+.++.++++++ ++.+++++|++||...+..
T Consensus 72 ~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~-------- 143 (255)
T TIGR01963 72 AAAEFGGLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLVA-------- 143 (255)
T ss_pred HHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcCC--------
Confidence 45799999998721 12234567789999988888877 5677889999999866521
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHH-hcCCCce--EEecCCCc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNL-AKPGWTK--FIIGSGEN 220 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~-~~~g~~~--~i~g~g~~ 220 (520)
....+.|+.+|...|.+++.++.+ .+++++++||+.++||.....++..... ....... .....+.+
T Consensus 144 -------~~~~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (255)
T TIGR01963 144 -------SPFKSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLVEKQIADQAKTRGIPEEQVIREVMLPGQP 216 (255)
T ss_pred -------CCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHHHHHHhhhcccCCCchHHHHHHHHccCc
Confidence 122468999999999888776543 4899999999999988532221111100 0000000 01123456
Q ss_pred ccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
.++++|++|+|++++.+++.. .....|+.|+++++..
T Consensus 217 ~~~~~~~~d~a~~~~~~~~~~---~~~~~g~~~~~~~g~~ 253 (255)
T TIGR01963 217 TKRFVTVDEVAETALFLASDA---AAGITGQAIVLDGGWT 253 (255)
T ss_pred cccCcCHHHHHHHHHHHcCcc---ccCccceEEEEcCccc
Confidence 678999999999999988621 1245688999987654
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-20 Score=180.36 Aligned_cols=219 Identities=16% Similarity=0.118 Sum_probs=158.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
+++|+|+||||+|++|+++++.|+++| ++|+++ .|+..+ ......+ ...++.++.+|+.|.+++.+++
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g-~~V~~~--------~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~ 74 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADG-AEVIVV--------DICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAV 74 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCC-CEEEEE--------eCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 456899999999999999999999999 599994 443220 0000001 1234788999999999888877
Q ss_pred c-------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCC
Q 010005 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
+ .+|+|||+++... ...+++..++.|+.++.++++++. +.+.+++|++||...++.
T Consensus 75 ~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~~------ 148 (251)
T PRK12826 75 AAGVEDFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPRV------ 148 (251)
T ss_pred HHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhcc------
Confidence 5 5899999998722 223557789999999999999884 556789999999876510
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHH-HHHhcCCCceEEecCCCc
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLL-VNLAKPGWTKFIIGSGEN 220 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l-~~~~~~g~~~~i~g~g~~ 220 (520)
+..+...|+.+|...|.+++.++.+ .|++++++||+.++||..+...+.. ...+..+.+
T Consensus 149 --------~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~--------- 211 (251)
T PRK12826 149 --------GYPGLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNLGDAQWAEAIAAAIP--------- 211 (251)
T ss_pred --------CCCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhcCchHHHHHHHhcCC---------
Confidence 2234568999999999998887543 5899999999999999754332221 222222221
Q ss_pred ccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
...+++++|+|+++..++... .....|+.|+++++.
T Consensus 212 ~~~~~~~~dva~~~~~l~~~~---~~~~~g~~~~~~~g~ 247 (251)
T PRK12826 212 LGRLGEPEDIAAAVLFLASDE---ARYITGQTLPVDGGA 247 (251)
T ss_pred CCCCcCHHHHHHHHHHHhCcc---ccCcCCcEEEECCCc
Confidence 225889999999999877521 123578999998765
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.3e-20 Score=180.10 Aligned_cols=221 Identities=13% Similarity=0.056 Sum_probs=154.1
Q ss_pred CCCCCCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEEecCCCHHHH
Q 010005 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQI 78 (520)
Q Consensus 1 m~~~~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~~Dl~d~~~l 78 (520)
|+...+++++++||||+|+||++++++|.++| ++|+++|+.. ....+.+.+ ...++..+.+|++|.+++
T Consensus 1 ~~~~~~~~k~vlVtGas~gIG~~la~~l~~~G-~~v~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 71 (260)
T PRK12823 1 MMNQRFAGKVVVVTGAAQGIGRGVALRAAAEG-ARVVLVDRSE--------LVHEVAAELRAAGGEALALTADLETYAGA 71 (260)
T ss_pred CcccccCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCch--------HHHHHHHHHHhcCCeEEEEEEeCCCHHHH
Confidence 55666778999999999999999999999999 5999855432 100111111 123567899999998877
Q ss_pred HHHHc-------CCCEEEEcccCC--------CCCcchhhHHhhhHHHHHHHHHH----HHHCCCCEEEEeecccccccC
Q 010005 79 KKVLE-------GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVYNSTADVVFDG 139 (520)
Q Consensus 79 ~~~l~-------~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~ll~a----a~~~gvkr~V~~SS~~vyg~~ 139 (520)
.++++ ++|++||+||.. ....++...+++|+.++..++++ +++.+..++|++||...++.
T Consensus 72 ~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~- 150 (260)
T PRK12823 72 QAAMAAAVEAFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATRGI- 150 (260)
T ss_pred HHHHHHHHHHcCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCccccCC-
Confidence 76665 579999999841 22344566788999888755544 44566679999999876521
Q ss_pred CCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCC-------------CchHHHH
Q 010005 140 SHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT-------------QLVPLLV 203 (520)
Q Consensus 140 ~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~-------------~~~~~l~ 203 (520)
+..+|+.+|+..|.+.+.++.+ +|+++++++|+.+++|... ...+.+.
T Consensus 151 ----------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~ 214 (260)
T PRK12823 151 ----------------NRVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIV 214 (260)
T ss_pred ----------------CCCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccccccHHHHH
Confidence 1347999999999998887654 4899999999999997310 1223333
Q ss_pred HHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 204 NLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 204 ~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+....+.+ ..-+.+++|+|+++..++.. ......|+.+++.+++
T Consensus 215 ~~~~~~~~---------~~~~~~~~dva~~~~~l~s~---~~~~~~g~~~~v~gg~ 258 (260)
T PRK12823 215 DQTLDSSL---------MKRYGTIDEQVAAILFLASD---EASYITGTVLPVGGGD 258 (260)
T ss_pred HHHhccCC---------cccCCCHHHHHHHHHHHcCc---ccccccCcEEeecCCC
Confidence 33333322 22345699999999887751 1234578899998765
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.2e-21 Score=183.46 Aligned_cols=225 Identities=23% Similarity=0.225 Sum_probs=162.1
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCEEEE
Q 010005 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTVFY 90 (520)
Q Consensus 11 ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~Vih 90 (520)
|+|+||||.+|+++++.|++.+ ++|++ +.|++.+. ....+...+++.+.+|+.|.+++.++|+|+|+||.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~-~~V~~--------l~R~~~~~-~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~ 70 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG-FSVRA--------LVRDPSSD-RAQQLQALGAEVVEADYDDPESLVAALKGVDAVFS 70 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-GCEEE--------EESSSHHH-HHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEE
T ss_pred CEEECCccHHHHHHHHHHHhCC-CCcEE--------EEeccchh-hhhhhhcccceEeecccCCHHHHHHHHcCCceEEe
Confidence 7999999999999999999988 69999 67765321 11222335789999999999999999999999998
Q ss_pred cccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHH
Q 010005 91 VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEAL 170 (520)
Q Consensus 91 ~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~ 170 (520)
+.+... ........++++||+++|||+||+.|....+ ++.. ...|..+.-..|...|+.
T Consensus 71 ~~~~~~---------~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~----------~~~~--~~~p~~~~~~~k~~ie~~ 129 (233)
T PF05368_consen 71 VTPPSH---------PSELEQQKNLIDAAKAAGVKHFVPSSFGADY----------DESS--GSEPEIPHFDQKAEIEEY 129 (233)
T ss_dssp ESSCSC---------CCHHHHHHHHHHHHHHHT-SEEEESEESSGT----------TTTT--TSTTHHHHHHHHHHHHHH
T ss_pred ecCcch---------hhhhhhhhhHHHhhhccccceEEEEEecccc----------cccc--cccccchhhhhhhhhhhh
Confidence 877532 2225566889999999999999987655443 1110 122334455689999999
Q ss_pred HHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCC-CceEEecCCCcccccc-cHHHHHHHHHHHHHhhhcccccC
Q 010005 171 VLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPG-WTKFIIGSGENMSDFT-YVENVAHAHVCAAEALDSRMVSV 248 (520)
Q Consensus 171 ~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g-~~~~i~g~g~~~~~~i-~v~Dva~ai~~~~~~~~~~~~~~ 248 (520)
+++. +++++++|++..+........+ ....... ....+.++++....++ ..+|++++++.++. .+..
T Consensus 130 l~~~----~i~~t~i~~g~f~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvg~~va~il~-----~p~~ 198 (233)
T PF05368_consen 130 LRES----GIPYTIIRPGFFMENLLPPFAP--VVDIKKSKDVVTLPGPGNQKAVPVTDTRDVGRAVAAILL-----DPEK 198 (233)
T ss_dssp HHHC----TSEBEEEEE-EEHHHHHTTTHH--TTCSCCTSSEEEEETTSTSEEEEEEHHHHHHHHHHHHHH-----SGGG
T ss_pred hhhc----cccceeccccchhhhhhhhhcc--cccccccceEEEEccCCCccccccccHHHHHHHHHHHHc-----ChHH
Confidence 9884 9999999999877432111111 0012222 2457888888777775 99999999999998 3333
Q ss_pred --CCceEEEeCCCCcCHHHHHHHHHHHcCCCC
Q 010005 249 --AGMAFFITNLEPIKFWDFLSIILEGLGYQR 278 (520)
Q Consensus 249 --~g~~yni~~~~~~t~~el~~~i~~~~g~~~ 278 (520)
.++.+++++ +.+|+.|+++.+.+.+|++.
T Consensus 199 ~~~~~~~~~~~-~~~t~~eia~~~s~~~G~~v 229 (233)
T PF05368_consen 199 HNNGKTIFLAG-ETLTYNEIAAILSKVLGKKV 229 (233)
T ss_dssp TTEEEEEEEGG-GEEEHHHHHHHHHHHHTSEE
T ss_pred hcCCEEEEeCC-CCCCHHHHHHHHHHHHCCcc
Confidence 467888877 88999999999999999863
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-20 Score=184.56 Aligned_cols=228 Identities=15% Similarity=0.166 Sum_probs=160.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
.++++++||||+|+||+++++.|+++| ++|+++|+.. ... .+.+.+ ..++..+.+|++|.+++.++++
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G-~~v~~~~r~~--------~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~ 73 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEG-ARVVIADIKP--------ARARLAALEI-GPAAIAVSLDVTRQDSIDRIVAA 73 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEcCCH--------HHHHHHHHHh-CCceEEEEccCCCHHHHHHHHHH
Confidence 346899999999999999999999999 5999955432 210 011111 2357889999999988887775
Q ss_pred ------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHCC-----CCEEEEeecccccccCCCCCCC
Q 010005 84 ------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRECK-----VRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 ------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-----vkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|++||+|+.. ....+++..+++|+.++.++++++.... -.++|++||.....
T Consensus 74 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~-------- 145 (257)
T PRK07067 74 AVERFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRR-------- 145 (257)
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCC--------
Confidence 479999999862 1224567789999999999999986532 24799999964321
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHh--cCCCceEEecCCCc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLA--KPGWTKFIIGSGEN 220 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~--~~g~~~~i~g~g~~ 220 (520)
+..+...|+.+|+..|.+.+.++. .+|++++++||+.++++..+.....+.... ..+......+++.+
T Consensus 146 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (257)
T PRK07067 146 -------GEALVSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQVDALFARYENRPPGEKKRLVGEAVP 218 (257)
T ss_pred -------CCCCCchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhhhhhhhhhccCCCHHHHHHHHhhcCC
Confidence 223567899999999999887754 479999999999999985332111110000 00111112334456
Q ss_pred ccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
...+.+++|+|+++..++.. ......|++|++++++.+
T Consensus 219 ~~~~~~~~dva~~~~~l~s~---~~~~~~g~~~~v~gg~~~ 256 (257)
T PRK07067 219 LGRMGVPDDLTGMALFLASA---DADYIVAQTYNVDGGNWM 256 (257)
T ss_pred CCCccCHHHHHHHHHHHhCc---ccccccCcEEeecCCEeC
Confidence 77899999999999988862 123467899999987654
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-20 Score=184.79 Aligned_cols=224 Identities=17% Similarity=0.170 Sum_probs=154.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
++++|+||||+|+||++++++|+++| ++|+++++ ++.+. .+...+ ...++..+.+|+.|.+++.++++
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g-~~v~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 73 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEG-AKVVIADL--------NDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGID 73 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeC--------CHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 35899999999999999999999999 59999544 32210 000111 12467889999999998887775
Q ss_pred -------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHH----HHHHHHHCCCCEEEEeecccccccCCCCCCC
Q 010005 84 -------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKN----VVTACRECKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 -------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~----ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|+|||+|+.. ....+.+..++.|+.++.+ +++++++.+.++||++||...+.
T Consensus 74 ~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~-------- 145 (258)
T PRK12429 74 YAVETFGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLV-------- 145 (258)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhcc--------
Confidence 589999999862 1223445678899999544 55555666788999999986652
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCce-----EEecC
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTK-----FIIGS 217 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~-----~i~g~ 217 (520)
+..+.+.|+.+|+..+.+.+.++.+ .+++++++||+.+++|.....++..... .+.+. ..+..
T Consensus 146 -------~~~~~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 216 (258)
T PRK12429 146 -------GSAGKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVRKQIPDLAKE--RGISEEEVLEDVLLP 216 (258)
T ss_pred -------CCCCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhhhhhhhhccc--cCCChHHHHHHHHhc
Confidence 1234678999999999888766433 5899999999999998643222211100 01100 01222
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
....+.|++++|+|+++..++... .....|+.|+++++.
T Consensus 217 ~~~~~~~~~~~d~a~~~~~l~~~~---~~~~~g~~~~~~~g~ 255 (258)
T PRK12429 217 LVPQKRFTTVEEIADYALFLASFA---AKGVTGQAWVVDGGW 255 (258)
T ss_pred cCCccccCCHHHHHHHHHHHcCcc---ccCccCCeEEeCCCE
Confidence 334568999999999999887621 234568899998753
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=176.68 Aligned_cols=225 Identities=15% Similarity=0.118 Sum_probs=155.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC--CCCCCCC--CCCCcEEEEecCCCHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN--SLLPDSL--SSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~--~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
+++++++||||+|+||+++++.|+++| ++|++++ |+... ..+...+ ...++..+.+|++|++++.++
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G-~~V~~~~--------r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~ 74 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAG-AHVVVNY--------RQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAAL 74 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCC-CEEEEEe--------CCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 456899999999999999999999999 5898843 33211 0000000 123567899999999988777
Q ss_pred Hc-------CCCEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCC--CCEEEEeecccccccCCCCCCCCCCCcc
Q 010005 82 LE-------GASTVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHDIHNGDETLT 151 (520)
Q Consensus 82 l~-------~~D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g--vkr~V~~SS~~vyg~~~~~~~~~~E~~~ 151 (520)
++ ++|+|||+|+. .....++...+++|+.++.++++++.+.- ..++|++||...... +..+..
T Consensus 75 ~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~------~~~~~~- 147 (248)
T PRK07806 75 MDTAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFI------PTVKTM- 147 (248)
T ss_pred HHHHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcC------ccccCC-
Confidence 65 58999999986 33334567789999999999999998752 358999999654210 111111
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHH
Q 010005 152 CCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVE 228 (520)
Q Consensus 152 ~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~ 228 (520)
...++|+.+|+..|.+++.++. ..|+++++++|+.+-++... .+......+ ...........+++++
T Consensus 148 ---~~~~~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~ 217 (248)
T PRK07806 148 ---PEYEPVARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVTA----TLLNRLNPG---AIEARREAAGKLYTVS 217 (248)
T ss_pred ---ccccHHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchhh----hhhccCCHH---HHHHHHhhhcccCCHH
Confidence 1256899999999999888754 36899999998877665321 111100000 0000001123789999
Q ss_pred HHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 229 NVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 229 Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
|+|++++.+++ .....|++|++++++.+
T Consensus 218 dva~~~~~l~~-----~~~~~g~~~~i~~~~~~ 245 (248)
T PRK07806 218 EFAAEVARAVT-----APVPSGHIEYVGGADYF 245 (248)
T ss_pred HHHHHHHHHhh-----ccccCccEEEecCccce
Confidence 99999999998 35568999999997743
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-19 Score=175.76 Aligned_cols=218 Identities=19% Similarity=0.151 Sum_probs=156.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC-CCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL-LPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~-l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
+++|+||||||+|+||+++++.|.++|+ +|++ +.|++.+.. ..... ...++.++.+|+.|++++.+++
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~-~v~~--------~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 73 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGA-KVVI--------YDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALI 73 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEE--------EeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHH
Confidence 3458999999999999999999999994 8988 444433100 00000 1235778899999998887776
Q ss_pred cC-------CCEEEEcccCCCC-------CcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCC
Q 010005 83 EG-------ASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 83 ~~-------~D~Vih~aa~~~~-------~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
++ +|+|||++|.... ..++...++.|+.++.++++++. +.+++++|++||.....
T Consensus 74 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~------- 146 (246)
T PRK05653 74 EAAVEAFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVT------- 146 (246)
T ss_pred HHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcc-------
Confidence 53 6999999987211 12346678999999999999884 56778999999976531
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcc
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (520)
+..+...|+.+|...|.+.+.++++ .+++++++||+.++|+....+........... ...
T Consensus 147 --------~~~~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~~~~~~~~---------~~~ 209 (246)
T PRK05653 147 --------GNPGQTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTEGLPEEVKAEILKE---------IPL 209 (246)
T ss_pred --------CCCCCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchhhhhHHHHHHHHhc---------CCC
Confidence 1234568999999999888777543 58999999999999987644222222222211 123
Q ss_pred cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..+++++|+++++..++... .....|+.|+++++.
T Consensus 210 ~~~~~~~dva~~~~~~~~~~---~~~~~g~~~~~~gg~ 244 (246)
T PRK05653 210 GRLGQPEEVANAVAFLASDA---ASYITGQVIPVNGGM 244 (246)
T ss_pred CCCcCHHHHHHHHHHHcCch---hcCccCCEEEeCCCe
Confidence 56888999999999887621 235578899999875
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-19 Score=177.28 Aligned_cols=228 Identities=16% Similarity=0.102 Sum_probs=163.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
+++++||||+|+||+++++.|+++| ++|++++ |++.+. .+.+.+...++..+.+|+.|.+++.++++
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g-~~v~~~~--------r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 72 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAG-DRVLALD--------IDAAALAAFADALGDARFVPVACDLTDAASLAAALANAA 72 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCC-CEEEEEe--------CCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 5789999999999999999999999 5899954 332210 11111123457889999999998887775
Q ss_pred ----CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCCCC
Q 010005 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
++|+|||+++... ....+...+++|+.++.++++++ ++.+.+++|++||...+..
T Consensus 73 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~---------- 142 (257)
T PRK07074 73 AERGPVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMAA---------- 142 (257)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcCC----------
Confidence 4799999998721 11223455779999999998888 3456678999999654310
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc---hHHHHHHhcCCCceEEecCCCccc
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL---VPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~---~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
.....|+.+|+..|.+++.++.+ +|++++++||+.++++..... .+.+...... .....
T Consensus 143 ------~~~~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~---------~~~~~ 207 (257)
T PRK07074 143 ------LGHPAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARVAANPQVFEELKK---------WYPLQ 207 (257)
T ss_pred ------CCCcccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhhcccccChHHHHHHHh---------cCCCC
Confidence 01247999999999998888654 479999999999998753211 1222222111 12346
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHH
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILE 272 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~ 272 (520)
+|++++|+++++..++... .....|+.+++.++.....+|+++.+.+
T Consensus 208 ~~~~~~d~a~~~~~l~~~~---~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 254 (257)
T PRK07074 208 DFATPDDVANAVLFLASPA---ARAITGVCLPVDGGLTAGNREMARTLTL 254 (257)
T ss_pred CCCCHHHHHHHHHHHcCch---hcCcCCcEEEeCCCcCcCChhhhhhhcc
Confidence 8999999999999988511 2345688999999899999999887754
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-19 Score=175.90 Aligned_cols=220 Identities=17% Similarity=0.191 Sum_probs=156.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEEecCCCHHHHHHHHc--
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
+|+++||||+|+||+++++.|.++| ++|+++|+... +......+.+ ...++.++.+|++|++++.++++
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g-~~vi~~~r~~~------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAG-FDLAINDRPDD------EELAATQQELRALGVEVIFFPADVADLSAHEAMLDAA 74 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCC-CEEEEEecCch------hHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 4789999999999999999999999 58988553211 0000000000 12357889999999988777664
Q ss_pred -----CCCEEEEcccCCC---------CCcchhhHHhhhHHHHHHHHHHHHHC-----C-----CCEEEEeecccccccC
Q 010005 84 -----GASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACREC-----K-----VRRLVYNSTADVVFDG 139 (520)
Q Consensus 84 -----~~D~Vih~aa~~~---------~~~~~~~~~~~Nv~gt~~ll~aa~~~-----g-----vkr~V~~SS~~vyg~~ 139 (520)
.+|+|||+||... ...+++..+++|+.++.++++++... + ++++|++||...+.
T Consensus 75 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~-- 152 (256)
T PRK12745 75 QAAWGRIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIM-- 152 (256)
T ss_pred HHhcCCCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhcc--
Confidence 5799999998621 22455678999999999999888542 1 56899999987652
Q ss_pred CCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEec
Q 010005 140 SHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIG 216 (520)
Q Consensus 140 ~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g 216 (520)
+..+.+.|+.+|+..|.+++.++.+ +|++++++||+.+.++...............+.
T Consensus 153 -------------~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~------ 213 (256)
T PRK12745 153 -------------VSPNRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTAPVTAKYDALIAKGL------ 213 (256)
T ss_pred -------------CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCccccccchhHHhhhhhcC------
Confidence 2234578999999999998888653 689999999999998765433333322222211
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
.....|.+++|+++++..++.. ..+...|+.|+++++..
T Consensus 214 --~~~~~~~~~~d~a~~i~~l~~~---~~~~~~G~~~~i~gg~~ 252 (256)
T PRK12745 214 --VPMPRWGEPEDVARAVAALASG---DLPYSTGQAIHVDGGLS 252 (256)
T ss_pred --CCcCCCcCHHHHHHHHHHHhCC---cccccCCCEEEECCCee
Confidence 1234677999999999987752 12345689999988654
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-19 Score=177.82 Aligned_cols=240 Identities=15% Similarity=0.170 Sum_probs=165.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
+++++++|||||+|+||+++++.|+++| ++|+++++.... . ......+.......++.++.+|+.|.+++.++++
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G-~~V~~~~r~~~~-~--~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAG-AAVMIVGRNPDK-L--AAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDA 79 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEeCCHHH-H--HHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHH
Confidence 4557999999999999999999999999 599995432210 0 0000001111012467889999999998887776
Q ss_pred ------CCCEEEEcccCC--------CCCcchhhHHhhhHHHHHHHHHHHHHC----CCCEEEEeecccccccCCCCCCC
Q 010005 84 ------GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 ------~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~ll~aa~~~----gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|+|||+|+.. ....++..++++|+.++.++++++.+. +..++|++||...+.
T Consensus 80 ~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~-------- 151 (276)
T PRK05875 80 ATAWHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASN-------- 151 (276)
T ss_pred HHHHcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcC--------
Confidence 689999999852 122335678899999999999887653 345899999987752
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch--HHHHHHhcCCCceEEecCCCc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGEN 220 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~--~~l~~~~~~g~~~~i~g~g~~ 220 (520)
+..+.+.|+.+|+..|.+++.++.+ .+++++++||+.+.++...... ......... ...
T Consensus 152 -------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~---------~~~ 215 (276)
T PRK05875 152 -------THRWFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPITESPELSADYRA---------CTP 215 (276)
T ss_pred -------CCCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCccccccccCHHHHHHHHc---------CCC
Confidence 1234578999999999999887643 4799999999998876432111 111111111 122
Q ss_pred ccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc----CHHHHHHHHHHHcC
Q 010005 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI----KFWDFLSIILEGLG 275 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~----t~~el~~~i~~~~g 275 (520)
...+.+++|+++++..++... .....|+++++++++.+ +..|+++.+.+..|
T Consensus 216 ~~~~~~~~dva~~~~~l~~~~---~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 271 (276)
T PRK05875 216 LPRVGEVEDVANLAMFLLSDA---ASWITGQVINVDGGHMLRRGPDFSSMLEPVFGADG 271 (276)
T ss_pred CCCCcCHHHHHHHHHHHcCch---hcCcCCCEEEECCCeeccCCccHHHHHHHHhhHHH
Confidence 334677999999999988721 12345899999988765 77777777765544
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-19 Score=179.38 Aligned_cols=202 Identities=18% Similarity=0.113 Sum_probs=141.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
++++|+||||+|+||++++++|+++| ++|++++ |++.+. .+.. ....++..+.+|+.|.+++.++++
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G-~~V~~~~--------r~~~~~~~l~~-~~~~~~~~~~~D~~d~~~~~~~~~~~ 72 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAG-HRVVGTV--------RSEAARADFEA-LHPDRALARLLDVTDFDAIDAVVADA 72 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCc-CEEEEEe--------CCHHHHHHHHh-hcCCCeeEEEccCCCHHHHHHHHHHH
Confidence 35789999999999999999999999 5899954 433210 1111 112357789999999998887776
Q ss_pred -----CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|+|||+||... ...++...+++|+.|+.++++++ ++.+.+++|++||.+.+.
T Consensus 73 ~~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~---------- 142 (277)
T PRK06180 73 EATFGPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLI---------- 142 (277)
T ss_pred HHHhCCCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccC----------
Confidence 4799999999721 11234567999999999999985 345567999999987652
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCC-------chHHH---HHHhcCCCceEE
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-------LVPLL---VNLAKPGWTKFI 214 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~-------~~~~l---~~~~~~g~~~~i 214 (520)
+..+.+.|+.+|+..|.+++.++.+ .|++++++||+.+.++.... ..+.. ........ .
T Consensus 143 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 214 (277)
T PRK06180 143 -----TMPGIGYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDWAGRSMVRTPRSIADYDALFGPIRQAR---E 214 (277)
T ss_pred -----CCCCcchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCccccccccCCCCcHhHHHHHHHHHHHH---H
Confidence 1234678999999999988877643 58999999999998764221 11111 11110000 0
Q ss_pred ecCCCcccccccHHHHHHHHHHHHH
Q 010005 215 IGSGENMSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~ai~~~~~ 239 (520)
...+ ..+..++|+|++++.+++
T Consensus 215 ~~~~---~~~~~~~dva~~~~~~l~ 236 (277)
T PRK06180 215 AKSG---KQPGDPAKAAQAILAAVE 236 (277)
T ss_pred hhcc---CCCCCHHHHHHHHHHHHc
Confidence 0111 235579999999999887
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.4e-20 Score=181.68 Aligned_cols=220 Identities=15% Similarity=0.059 Sum_probs=151.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-----CCCCCCCCCCcEEEEecCCCHHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-----LLPDSLSSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-----~l~~~~~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
+++++|||||+|++|+++++.|+++| ++|++++ |++... .........+++++.+|+.|++++.+
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G-~~V~~~~--------r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~- 71 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKG-YLVIATM--------RNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN- 71 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCC-CEEEEEe--------CCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-
Confidence 45789999999999999999999999 5999854 332210 00111112468899999999988765
Q ss_pred Hc-------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCC
Q 010005 82 LE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 82 l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~ 143 (520)
++ ++|+|||+|+... ...++..++++|+.++.++++++ ++.+.+++|++||...+.
T Consensus 72 ~~~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~------ 145 (280)
T PRK06914 72 FQLVLKEIGRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRV------ 145 (280)
T ss_pred HHHHHHhcCCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccC------
Confidence 42 4799999998721 12345667889999999888885 666778999999975431
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhc---CCCCceEEEEecCccccCCCCCch-------------HHHHHHhc
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLV-------------PLLVNLAK 207 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~---~~~gi~~~ilRp~~vyGp~~~~~~-------------~~l~~~~~ 207 (520)
+..+.+.|+.+|...|.+++.++ ..+|++++++||+.++++...... ......+.
T Consensus 146 ---------~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (280)
T PRK06914 146 ---------GFPGLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQ 216 (280)
T ss_pred ---------CCCCCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhccccccccccccccchHHHHHHHH
Confidence 12345789999999999988875 346999999999999887321100 00111100
Q ss_pred CCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHH
Q 010005 208 PGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFW 264 (520)
Q Consensus 208 ~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~ 264 (520)
.. . ......+++++|+|++++.+++ ....+..|+++++..+++.
T Consensus 217 ~~----~---~~~~~~~~~~~dva~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 260 (280)
T PRK06914 217 KH----I---NSGSDTFGNPIDVANLIVEIAE------SKRPKLRYPIGKGVKLMIL 260 (280)
T ss_pred HH----H---hhhhhccCCHHHHHHHHHHHHc------CCCCCcccccCCchHHHHH
Confidence 00 0 0123457889999999999998 2333357888876655444
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-19 Score=178.80 Aligned_cols=228 Identities=16% Similarity=0.134 Sum_probs=154.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
.+++++|||||+|+||++++++|+++| ++|++++ |+... ..+.+.....++..+.+|+.|++++.++++
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g-~~V~~~~--------r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAG-ARVHVCD--------VSEAALAATAARLPGAKVTATVADVADPAQVERVFDT 79 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEe--------CCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHH
Confidence 457899999999999999999999999 4899954 43221 011111111256889999999998877764
Q ss_pred ------CCCEEEEcccCC-C-------CCcchhhHHhhhHHHHHHHHHHHH----HCCC-CEEEEeecccccccCCCCCC
Q 010005 84 ------GASTVFYVDATD-L-------NTDDFYNCYMIIVQGAKNVVTACR----ECKV-RRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 84 ------~~D~Vih~aa~~-~-------~~~~~~~~~~~Nv~gt~~ll~aa~----~~gv-kr~V~~SS~~vyg~~~~~~~ 144 (520)
++|+|||+|+.. . ...++...++.|+.++.++++++. +.+. ++++++||...+.
T Consensus 80 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~------- 152 (264)
T PRK12829 80 AVERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRL------- 152 (264)
T ss_pred HHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEeccccccc-------
Confidence 689999999873 1 123457889999999999999874 3444 5788888765421
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceE--EecCCC
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKF--IIGSGE 219 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~--i~g~g~ 219 (520)
+..+...|+.+|...|.+++.++.+ .+++++++||+.++||......+........+.... ......
T Consensus 153 --------~~~~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (264)
T PRK12829 153 --------GYPGRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMRRVIEARAQQLGIGLDEMEQEYLEKI 224 (264)
T ss_pred --------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHHHHhhhhhhccCCChhHHHHHHHhcC
Confidence 1123457999999999998887653 489999999999999875433222111111100000 000011
Q ss_pred cccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
....+++++|+++++..++.. ......|+.|+++++..
T Consensus 225 ~~~~~~~~~d~a~~~~~l~~~---~~~~~~g~~~~i~~g~~ 262 (264)
T PRK12829 225 SLGRMVEPEDIAATALFLASP---AARYITGQAISVDGNVE 262 (264)
T ss_pred CCCCCCCHHHHHHHHHHHcCc---cccCccCcEEEeCCCcc
Confidence 234689999999999877641 12345788999998753
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-19 Score=172.23 Aligned_cols=211 Identities=13% Similarity=0.106 Sum_probs=152.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
.+++++|||||+|+||+++++.|+++| ++|++++ |++.+. .....+...+.+.+.+|+.|.+++.++++
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G-~~v~~~~--------r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARG-ARVALIG--------RGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDE 75 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCC-CeEEEEe--------CChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHH
Confidence 346899999999999999999999999 5899954 432210 00011122356788999999988877775
Q ss_pred ------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCC
Q 010005 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|+|||+++... ...++...++.|+.++.++++++. +.+++++|++||...++.
T Consensus 76 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~-------- 147 (239)
T PRK12828 76 VNRQFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKA-------- 147 (239)
T ss_pred HHHHhCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccC--------
Confidence 5899999998621 122345678899999999998875 456889999999987632
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
..+...|+.+|...+.+++.++. ..++++.++||+.++++..... .+ ......
T Consensus 148 -------~~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~~---------------~~--~~~~~~ 203 (239)
T PRK12828 148 -------GPGMGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRAD---------------MP--DADFSR 203 (239)
T ss_pred -------CCCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhhc---------------CC--chhhhc
Confidence 12456899999998888876654 3589999999999998742110 00 112334
Q ss_pred cccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
|++++|+|+++..+++.. .....|+.+.+.+++.
T Consensus 204 ~~~~~dva~~~~~~l~~~---~~~~~g~~~~~~g~~~ 237 (239)
T PRK12828 204 WVTPEQIAAVIAFLLSDE---AQAITGASIPVDGGVA 237 (239)
T ss_pred CCCHHHHHHHHHHHhCcc---cccccceEEEecCCEe
Confidence 899999999999888621 1245688999988754
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.1e-19 Score=173.13 Aligned_cols=217 Identities=16% Similarity=0.119 Sum_probs=156.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++++++||||+|+||++++++|+++| ++|+++++ +... ..+.+.+ ...+...+.+|++|.+++.+++
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g-~~vi~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 74 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREG-ASVVVADI--------NAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMA 74 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeC--------CHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH
Confidence 356899999999999999999999999 59999554 3211 0011111 1235678899999998877666
Q ss_pred c-------CCCEEEEcccCCC----------CCcchhhHHhhhHHHHHHHHHHHHHC----CCCEEEEeecccccccCCC
Q 010005 83 E-------GASTVFYVDATDL----------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSH 141 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~~----------~~~~~~~~~~~Nv~gt~~ll~aa~~~----gvkr~V~~SS~~vyg~~~~ 141 (520)
+ ++|+|||+||... +...++.++++|+.++.++++++... +.+++|++||...|.
T Consensus 75 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~---- 150 (250)
T PRK07774 75 DATVSAFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWL---- 150 (250)
T ss_pred HHHHHHhCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccC----
Confidence 5 5799999999621 22345667899999999999998754 356999999988762
Q ss_pred CCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch-HHHHHHhcCCCceEEecC
Q 010005 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-PLLVNLAKPGWTKFIIGS 217 (520)
Q Consensus 142 ~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~-~~l~~~~~~g~~~~i~g~ 217 (520)
+.+.|+.+|+..|.+++.++++ .|+.+++++|+.+..+...... ..+...+..+.+.
T Consensus 151 --------------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~----- 211 (250)
T PRK07774 151 --------------YSNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRTVTPKEFVADMVKGIPL----- 211 (250)
T ss_pred --------------CccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCccccccCCHHHHHHHHhcCCC-----
Confidence 3468999999999998887654 4899999999999887654322 2333333333321
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
..+..++|++++++.++... .....|++||+++++.+
T Consensus 212 ----~~~~~~~d~a~~~~~~~~~~---~~~~~g~~~~v~~g~~~ 248 (250)
T PRK07774 212 ----SRMGTPEDLVGMCLFLLSDE---ASWITGQIFNVDGGQII 248 (250)
T ss_pred ----CCCcCHHHHHHHHHHHhChh---hhCcCCCEEEECCCeec
Confidence 12456899999999887621 12357889999987654
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-19 Score=174.40 Aligned_cols=218 Identities=14% Similarity=0.039 Sum_probs=152.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~-~~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
++++||||||+|+||++++++|+++| ++|++..+ +... ........ ...++..+.+|++|.+++.++++
T Consensus 5 ~~~~vlitGasg~iG~~l~~~l~~~g-~~v~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (252)
T PRK06077 5 KDKVVVVTGSGRGIGRAIAVRLAKEG-SLVVVNAK-------KRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAK 76 (252)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeC-------CChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHH
Confidence 46899999999999999999999999 58776321 1111 00000000 11346688999999988777665
Q ss_pred -------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|+|||+||... .....+..+++|+.++.++++++.+. ..+++|++||...|.
T Consensus 77 ~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~---------- 146 (252)
T PRK06077 77 ATIDRYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIR---------- 146 (252)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccC----------
Confidence 5799999999611 11223567899999999999998864 235899999987762
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCCC--CceEEEEecCccccCCCCCchH---HHHHHhcCCCceEEecCCCccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQLVP---LLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~vyGp~~~~~~~---~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
+..+.+.|+.+|+..|.+++.++.+. ++.+.+++|+.+.++....... ....... .+.....
T Consensus 147 -----~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~--------~~~~~~~ 213 (252)
T PRK06077 147 -----PAYGLSIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKLGESLFKVLGMSEKEFA--------EKFTLMG 213 (252)
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChHHHhhhhcccccHHHHH--------HhcCcCC
Confidence 33456799999999999998876643 7899999999998764321100 0000000 0111234
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
.+++++|+|++++.+++ .+...|+.|++++++.
T Consensus 214 ~~~~~~dva~~~~~~~~-----~~~~~g~~~~i~~g~~ 246 (252)
T PRK06077 214 KILDPEEVAEFVAAILK-----IESITGQVFVLDSGES 246 (252)
T ss_pred CCCCHHHHHHHHHHHhC-----ccccCCCeEEecCCee
Confidence 68999999999999987 3456788999998763
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-19 Score=174.94 Aligned_cols=222 Identities=15% Similarity=0.122 Sum_probs=157.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCC--CCCcEEEEecCCCHHHHHHH
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLS--SGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~--~~~v~~~~~Dl~d~~~l~~~ 81 (520)
..+++++|||||+|+||++++++|+++| ++|++.++ ++.+. .+.+.+. ..++..+.+|+.|.+++.++
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G-~~V~~~~r--------~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~ 77 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAG-AEVILNGR--------DPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAA 77 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcC-CEEEEEeC--------CHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHH
Confidence 3456899999999999999999999999 59998544 32210 0001111 23477889999999988887
Q ss_pred Hc-------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHC----CCCEEEEeecccccccCCCCC
Q 010005 82 LE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 82 l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~----gvkr~V~~SS~~vyg~~~~~~ 143 (520)
++ ..|+|||+||... ....++..+++|+.++.++++++.+. +.+++|++||.....
T Consensus 78 ~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~------ 151 (255)
T PRK07523 78 IDAFEAEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSAL------ 151 (255)
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhcc------
Confidence 75 3799999999721 22344677889999999999998753 567999999975431
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCch--HHHHHHhcCCCceEEecCC
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~--~~l~~~~~~g~~~~i~g~g 218 (520)
+..+.+.|+.+|...|.+.+.++. .+|+++.++||+.+.++...... +.+...+....
T Consensus 152 ---------~~~~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~-------- 214 (255)
T PRK07523 152 ---------ARPGIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAALVADPEFSAWLEKRT-------- 214 (255)
T ss_pred ---------CCCCCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhhccCHHHHHHHHhcC--------
Confidence 223467899999999999888764 46899999999999988543211 22222222222
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t 262 (520)
....+..++|+|+++..++.. +.....|+.++++++...+
T Consensus 215 -~~~~~~~~~dva~~~~~l~~~---~~~~~~G~~i~~~gg~~~~ 254 (255)
T PRK07523 215 -PAGRWGKVEELVGACVFLASD---ASSFVNGHVLYVDGGITAS 254 (255)
T ss_pred -CCCCCcCHHHHHHHHHHHcCc---hhcCccCcEEEECCCeecc
Confidence 223467899999999988751 1234568899998876443
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.3e-19 Score=175.76 Aligned_cols=213 Identities=17% Similarity=0.162 Sum_probs=148.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
++++++||||+|+||+++++.|+++| ++|+++++ +... ......+ ...++..+.+|+.|.+++.++++
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~~~G-~~V~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 79 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELAAAG-FPVALGAR--------RVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVA 79 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeC--------CHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 45789999999999999999999999 58888443 2210 0000000 12357788999999998887775
Q ss_pred -------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCC
Q 010005 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|+|||+|+... ...++...+++|+.++.++++++. +.+..++|++||...|..
T Consensus 80 ~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~~------- 152 (274)
T PRK07775 80 QAEEALGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALRQ------- 152 (274)
T ss_pred HHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcCC-------
Confidence 4799999998721 123455668999999999998875 344568999999877631
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCC-CC---CchHHHHHHhcCCCceEEecCC
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPG-DT---QLVPLLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~-~~---~~~~~l~~~~~~g~~~~i~g~g 218 (520)
..+.+.|+.+|+..|.+++.++.+ .|++++++|||.+.++. .. ..+..+...... .+ +
T Consensus 153 --------~~~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~------~~-~ 217 (274)
T PRK07775 153 --------RPHMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWSLPAEVIGPMLEDWAK------WG-Q 217 (274)
T ss_pred --------CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCcccccCChhhhhHHHHHHHH------hc-c
Confidence 123468999999999999887643 48999999999876542 21 111111111111 11 1
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEe
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFIT 256 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~ 256 (520)
.....++|++|+|++++.+++ ....+.+||+.
T Consensus 218 ~~~~~~~~~~dva~a~~~~~~------~~~~~~~~~~~ 249 (274)
T PRK07775 218 ARHDYFLRASDLARAITFVAE------TPRGAHVVNME 249 (274)
T ss_pred cccccccCHHHHHHHHHHHhc------CCCCCCeeEEe
Confidence 224569999999999999887 22345688886
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-19 Score=176.07 Aligned_cols=231 Identities=14% Similarity=0.065 Sum_probs=155.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc----
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~---- 83 (520)
+++||||||+|+||++++++|.++| ++|+++|+.... . + .....+.......++..+.+|++|.+++.++++
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g-~~vi~~~r~~~~-~-~-~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 77 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEG-YRVAVADINSEK-A-A-NVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDE 77 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCHHH-H-H-HHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999 599986543210 0 0 000001111111357889999999988776664
Q ss_pred ---CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CC-CCEEEEeecccccccCCCCCCCCCC
Q 010005 84 ---GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 ---~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~g-vkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
++|+|||+||.. ....+++..+++|+.++.++++++.+ .+ -.++|++||.....
T Consensus 78 ~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~----------- 146 (259)
T PRK12384 78 IFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKV----------- 146 (259)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCccccc-----------
Confidence 479999999862 12234567889999998887777754 45 35899999864310
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCC-CchHHHHHHhc--CCCceEEecCCCccc
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDT-QLVPLLVNLAK--PGWTKFIIGSGENMS 222 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~-~~~~~l~~~~~--~g~~~~i~g~g~~~~ 222 (520)
+......|+.+|+..+.+++.++. .+|+++.++||+.++++... ..++.+..... .+.......++....
T Consensus 147 ----~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (259)
T PRK12384 147 ----GSKHNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQSLLPQYAKKLGIKPDEVEQYYIDKVPLK 222 (259)
T ss_pred ----CCCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchhhhhhhHHHHHhcCCChHHHHHHHHHhCccc
Confidence 112346899999999888877763 47999999999998876432 33333322211 001111123445667
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
.+++++|++.+++.++.. ......|++|++++++.
T Consensus 223 ~~~~~~dv~~~~~~l~~~---~~~~~~G~~~~v~~g~~ 257 (259)
T PRK12384 223 RGCDYQDVLNMLLFYASP---KASYCTGQSINVTGGQV 257 (259)
T ss_pred CCCCHHHHHHHHHHHcCc---ccccccCceEEEcCCEE
Confidence 899999999999988652 12335789999998753
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-19 Score=176.88 Aligned_cols=222 Identities=12% Similarity=0.045 Sum_probs=156.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
++++++|||||+|+||+++++.|+++| ++|+++|+.... +.+.. ..+.. ...++..+.+|++|.+++.++++
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G-~~V~~~~r~~~~-~~~~~--~~~~~--~~~~~~~~~~D~~d~~~~~~~~~~~ 77 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALG-MKLVLADVQQDA-LDRAV--AELRA--QGAEVLGVRTDVSDAAQVEALADAA 77 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEeCChHH-HHHHH--HHHHh--cCCeEEEEECCCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 599986553210 00000 00000 12356779999999999888876
Q ss_pred -----CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHH----HHHCCC------CEEEEeecccccccCCC
Q 010005 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTA----CRECKV------RRLVYNSTADVVFDGSH 141 (520)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~a----a~~~gv------kr~V~~SS~~vyg~~~~ 141 (520)
++|+|||+||... ...++...+++|+.|+.++.++ +.+.+. .++|++||...+..
T Consensus 78 ~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~--- 154 (287)
T PRK06194 78 LERFGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLA--- 154 (287)
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccC---
Confidence 4799999999821 2244566789999999997777 444443 58999999877631
Q ss_pred CCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCCC-----CceEEEEecCccccCCCCCchHHHHHHhcCCCceEEec
Q 010005 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-----GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIG 216 (520)
Q Consensus 142 ~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g 216 (520)
..+...|+.+|+..|.+++.++.+. ++++.++.|+.+..+- .....+++..+.+
T Consensus 155 ------------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~~---------~~~~~~~~~~~~~ 213 (287)
T PRK06194 155 ------------PPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTGI---------WQSERNRPADLAN 213 (287)
T ss_pred ------------CCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCcc---------ccccccCchhccc
Confidence 1234689999999999988876543 4666667776554331 1222344556778
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCC
Q 010005 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQR 278 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~ 278 (520)
+|.+.++|+|++|++.+.. . . ..++..|+++.+.+.++...
T Consensus 214 ~~~~~~~~~~~~~~~~~~~---~-------~-----------~~~s~~dva~~i~~~~~~~~ 254 (287)
T PRK06194 214 TAPPTRSQLIAQAMSQKAV---G-------S-----------GKVTAEEVAQLVFDAIRAGR 254 (287)
T ss_pred CccccchhhHHHHHHHhhh---h-------c-----------cCCCHHHHHHHHHHHHHcCC
Confidence 8899999999999987653 1 0 01789999999999875443
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.9e-19 Score=173.74 Aligned_cols=218 Identities=16% Similarity=0.166 Sum_probs=151.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
+++++|+||||+|+||+++++.|+++| ++|.+++ .|+..+ ......+ ....+.++.+|++|.+++.+++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~G-~~v~i~~-------~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~ 75 (254)
T PRK12746 4 LDGKVALVTGASRGIGRAIAMRLANDG-ALVAIHY-------GRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLV 75 (254)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEc-------CCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHH
Confidence 346899999999999999999999999 5876631 333211 0000001 1235778999999999888776
Q ss_pred c-------------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCC
Q 010005 83 E-------------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGS 140 (520)
Q Consensus 83 ~-------------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~ 140 (520)
+ ++|+|||+||... ........+++|+.++.++++++.+. +.+++|++||..++.
T Consensus 76 ~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~--- 152 (254)
T PRK12746 76 EQLKNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRL--- 152 (254)
T ss_pred HHHHHHhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcC---
Confidence 6 4899999998721 11223567789999999999998764 345899999988763
Q ss_pred CCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCch--HHHHHHhcCCCceEEe
Q 010005 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFII 215 (520)
Q Consensus 141 ~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~--~~l~~~~~~g~~~~i~ 215 (520)
+..+...|+.+|+..|.+.+.++. ..++++++++|+.+++|-..... +.+......
T Consensus 153 ------------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~------- 213 (254)
T PRK12746 153 ------------GFTGSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLDDPEIRNFATN------- 213 (254)
T ss_pred ------------CCCCCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhhccChhHHHHHHh-------
Confidence 223456899999999998777654 36899999999999987533211 111111111
Q ss_pred cCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 216 g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
......+++++|+++++..++.. ......|+.|+++++
T Consensus 214 --~~~~~~~~~~~dva~~~~~l~~~---~~~~~~g~~~~i~~~ 251 (254)
T PRK12746 214 --SSVFGRIGQVEDIADAVAFLASS---DSRWVTGQIIDVSGG 251 (254)
T ss_pred --cCCcCCCCCHHHHHHHHHHHcCc---ccCCcCCCEEEeCCC
Confidence 11234677899999999877761 112346889999875
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=170.03 Aligned_cols=218 Identities=13% Similarity=0.063 Sum_probs=154.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
+++++++||||+|+||++++++|+++| ++|++.+ .|++.. ....+.+ ...++.++.+|++|.+++.+++
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g-~~v~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~ 75 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEG-AKVVINY-------NSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLV 75 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEc-------CCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 356899999999999999999999999 5887632 122110 0010111 1235788999999999888877
Q ss_pred cC-------CCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCC
Q 010005 83 EG-------ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 83 ~~-------~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
+. +|+|||+|+... ....++..+++|+.++.++++++.. .+.+++|++||...+.
T Consensus 76 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~------- 148 (247)
T PRK12935 76 EEAVNHFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQA------- 148 (247)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcC-------
Confidence 64 799999999721 1246677899999999999999874 3456999999975542
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcc
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (520)
+..+...|+.+|...|.+.+.+..+ .++++++++|+.+.++............... +...
T Consensus 149 --------~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~---------~~~~ 211 (247)
T PRK12935 149 --------GGFGQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMVAEVPEEVRQKIVA---------KIPK 211 (247)
T ss_pred --------CCCCCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhhhccHHHHHHHHH---------hCCC
Confidence 1124568999999988887776543 4899999999999876432221111111111 1234
Q ss_pred cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+.+.|++|++++++.+++. .....|+.||++++.
T Consensus 212 ~~~~~~edva~~~~~~~~~----~~~~~g~~~~i~~g~ 245 (247)
T PRK12935 212 KRFGQADEIAKGVVYLCRD----GAYITGQQLNINGGL 245 (247)
T ss_pred CCCcCHHHHHHHHHHHcCc----ccCccCCEEEeCCCc
Confidence 5689999999999998861 123678999998863
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=169.55 Aligned_cols=225 Identities=13% Similarity=0.043 Sum_probs=158.3
Q ss_pred CCCCCCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHH
Q 010005 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 1 m~~~~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (520)
|+...+++|++|||||+|+||++++++|+++| ++|+++++ +.. . ....++..+++|+.|.+++.+
T Consensus 1 ~~~~~~~~k~vlItGas~~iG~~la~~l~~~G-~~v~~~~~--------~~~----~--~~~~~~~~~~~D~~~~~~~~~ 65 (252)
T PRK08220 1 MNAMDFSGKTVWVTGAAQGIGYAVALAFVEAG-AKVIGFDQ--------AFL----T--QEDYPFATFVLDVSDAAAVAQ 65 (252)
T ss_pred CCccCCCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEec--------chh----h--hcCCceEEEEecCCCHHHHHH
Confidence 34444567899999999999999999999999 59998544 321 0 012357889999999998888
Q ss_pred HHcC-------CCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCC
Q 010005 81 VLEG-------ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 81 ~l~~-------~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~ 142 (520)
++++ +|+|||+++... ...++...+++|+.++.++++++.. .+..++|++||.....
T Consensus 66 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~~----- 140 (252)
T PRK08220 66 VCQRLLAETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAHV----- 140 (252)
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhcc-----
Confidence 7753 799999998721 2345677899999999999998753 4556899999976531
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHH--HHHHhcCCCceEEecC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPL--LVNLAKPGWTKFIIGS 217 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~--l~~~~~~g~~~~i~g~ 217 (520)
+..+.+.|+.+|+..|.+.+.++.+ +|+++++++|+.++++........ .......+.. .....
T Consensus 141 ----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~-~~~~~ 209 (252)
T PRK08220 141 ----------PRIGMAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWVDEDGEQQVIAGFP-EQFKL 209 (252)
T ss_pred ----------CCCCCchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhccchhhhhhhhhhHH-HHHhh
Confidence 2234678999999999999887654 789999999999999854321110 0000000000 00011
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+.....+++++|+|++++.++.. ......|+...+.++.
T Consensus 210 ~~~~~~~~~~~dva~~~~~l~~~---~~~~~~g~~i~~~gg~ 248 (252)
T PRK08220 210 GIPLGKIARPQEIANAVLFLASD---LASHITLQDIVVDGGA 248 (252)
T ss_pred cCCCcccCCHHHHHHHHHHHhcc---hhcCccCcEEEECCCe
Confidence 22345689999999999988852 1245667777777654
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.1e-19 Score=171.82 Aligned_cols=216 Identities=15% Similarity=0.147 Sum_probs=154.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
+++++++||||+|+||+++++.|.++| ++|+++ .|+..+ ..+.....+...+.+|+.|.+++.++++
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g-~~V~~~--------~r~~~~--~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 75 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRG-ARVVAA--------ARNAAA--LDRLAGETGCEPLRLDVGDDAAIRAALAAA 75 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCC-CEEEEE--------eCCHHH--HHHHHHHhCCeEEEecCCCHHHHHHHHHHh
Confidence 456899999999999999999999999 589994 444321 1111111245788999999988888876
Q ss_pred -CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHC----C-CCEEEEeecccccccCCCCCCCCCCCc
Q 010005 84 -GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIHNGDETL 150 (520)
Q Consensus 84 -~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~----g-vkr~V~~SS~~vyg~~~~~~~~~~E~~ 150 (520)
++|+|||+|+... ...+++..+++|+.++.++++++.+. + .+++|++||...+.
T Consensus 76 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~------------- 142 (245)
T PRK07060 76 GAFDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALV------------- 142 (245)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcC-------------
Confidence 4899999998721 22356677889999999999988753 2 36899999987753
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch--HHHHHHhcCCCceEEecCCCcccccc
Q 010005 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENMSDFT 225 (520)
Q Consensus 151 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~--~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (520)
+..+...|+.+|...|.+++.++.+ .+++++++||+.++++...... +........ ......|+
T Consensus 143 --~~~~~~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 211 (245)
T PRK07060 143 --GLPDHLAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWSDPQKSGPMLA---------AIPLGRFA 211 (245)
T ss_pred --CCCCCcHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhccCHHHHHHHHh---------cCCCCCCC
Confidence 1223568999999999998877643 5899999999999988643111 111111111 11234689
Q ss_pred cHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 226 ~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+++|++++++.++... .....|+.+++.++.
T Consensus 212 ~~~d~a~~~~~l~~~~---~~~~~G~~~~~~~g~ 242 (245)
T PRK07060 212 EVDDVAAPILFLLSDA---ASMVSGVSLPVDGGY 242 (245)
T ss_pred CHHHHHHHHHHHcCcc---cCCccCcEEeECCCc
Confidence 9999999999888621 234568898887754
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-18 Score=170.34 Aligned_cols=210 Identities=16% Similarity=0.032 Sum_probs=144.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
+++++++||||+|+||+++++.|.++| ++|++.|+.... +. ...+.+ ...++..+.+|++|.+++.++++
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G-~~Vv~~~r~~~~-l~------~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~ 75 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRG-ARVVLGDVDKPG-LR------QAVNHLRAEGFDVHGVMCDVRHREEVTHLAD 75 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHH-HH------HHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 457899999999999999999999999 589885543210 00 000111 12346788999999998887765
Q ss_pred -------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHH----HCC-CCEEEEeecccccccCCCCCC
Q 010005 84 -------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECK-VRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 84 -------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~g-vkr~V~~SS~~vyg~~~~~~~ 144 (520)
++|+|||+||.. ....+++..+++|+.++.++.+++. +.+ ..++|++||...+.
T Consensus 76 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~------- 148 (275)
T PRK05876 76 EAFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLV------- 148 (275)
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhcc-------
Confidence 379999999961 1223456778999999999999875 344 46899999987652
Q ss_pred CCCCCccCCCCCCChHHHHHHHHH----HHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCc
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAE----ALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E----~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~ 220 (520)
+..+...|+.+|...+ .+..++.. +|+++++++|+.+.++......................++...
T Consensus 149 --------~~~~~~~Y~asK~a~~~~~~~l~~e~~~-~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (275)
T PRK05876 149 --------PNAGLGAYGVAKYGVVGLAETLAREVTA-DGIGVSVLCPMVVETNLVANSERIRGAACAQSSTTGSPGPLPL 219 (275)
T ss_pred --------CCCCCchHHHHHHHHHHHHHHHHHHhhh-cCcEEEEEEeCccccccccchhhhcCccccccccccccccccc
Confidence 2245678999999744 44444433 6899999999999887533211100000011111123344445
Q ss_pred ccccccHHHHHHHHHHHHH
Q 010005 221 MSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~ 239 (520)
.+++++++|+|++++.+++
T Consensus 220 ~~~~~~~~dva~~~~~ai~ 238 (275)
T PRK05876 220 QDDNLGVDDIAQLTADAIL 238 (275)
T ss_pred cccCCCHHHHHHHHHHHHH
Confidence 6789999999999998887
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=178.06 Aligned_cols=258 Identities=17% Similarity=0.148 Sum_probs=184.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcC--CcEEEEecCCcccccCCCCCCCCCC----CC--------------CCCCCcE
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELG--KCIVRVTDSTQSLQLDPSESNSLLP----DS--------------LSSGRAE 66 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g--~~~V~~~D~~~~~~l~r~~~~~~l~----~~--------------~~~~~v~ 66 (520)
++++|+|||||||+|..+++.|+..- ..+++. +.|........ .+ ....++.
T Consensus 11 ~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYl--------LiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~ 82 (467)
T KOG1221|consen 11 KNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYL--------LIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVV 82 (467)
T ss_pred CCCeEEEEcccchhHHHHHHHHHhcCcCcceEEE--------EEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecce
Confidence 46899999999999999999999864 224555 45544321100 00 0125678
Q ss_pred EEEecCCCH------HHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCC-CCEEEEeecccccccC
Q 010005 67 YHQVDVRDI------SQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDG 139 (520)
Q Consensus 67 ~~~~Dl~d~------~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-vkr~V~~SS~~vyg~~ 139 (520)
.+.||+.++ ..++.+.+.+|+|||+||.............+|+.||+++++.|++.. .+-+||+||+.+. ..
T Consensus 83 pi~GDi~~~~LGis~~D~~~l~~eV~ivih~AAtvrFde~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n-~~ 161 (467)
T KOG1221|consen 83 PIAGDISEPDLGISESDLRTLADEVNIVIHSAATVRFDEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSN-CN 161 (467)
T ss_pred eccccccCcccCCChHHHHHHHhcCCEEEEeeeeeccchhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhhee-cc
Confidence 899999874 345567788999999999966666778889999999999999999995 7899999999875 11
Q ss_pred CC----CCCCCCC------------CccC----------CCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccC
Q 010005 140 SH----DIHNGDE------------TLTC----------CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGP 193 (520)
Q Consensus 140 ~~----~~~~~~E------------~~~~----------~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp 193 (520)
.. ...+..| +... .....+.|..+|+.+|+++.++++ ++|.+|+||+.|...
T Consensus 162 ~~~i~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~~--~lPivIiRPsiI~st 239 (467)
T KOG1221|consen 162 VGHIEEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEAE--NLPLVIIRPSIITST 239 (467)
T ss_pred cccccccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhcc--CCCeEEEcCCceecc
Confidence 11 0111111 1100 123467899999999999999874 899999999999987
Q ss_pred CCCCchH---------HHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC--CCcC
Q 010005 194 GDTQLVP---------LLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL--EPIK 262 (520)
Q Consensus 194 ~~~~~~~---------~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~--~~~t 262 (520)
...++.. .++-...+|.......|.+...|+|.||.++.+++.+.-.-..+.+...-.+||+++. ++++
T Consensus 240 ~~EP~pGWidn~~gp~g~i~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY~~tss~~Np~t 319 (467)
T KOG1221|consen 240 YKEPFPGWIDNLNGPDGVIIGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIYHLTSSNDNPVT 319 (467)
T ss_pred ccCCCCCccccCCCCceEEEEeccceEEEEEEccccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEEEecccccCccc
Confidence 5543211 1222334555556778888999999999999999976632221112123459999975 4799
Q ss_pred HHHHHHHHHHHcC
Q 010005 263 FWDFLSIILEGLG 275 (520)
Q Consensus 263 ~~el~~~i~~~~g 275 (520)
+.++.+...+...
T Consensus 320 ~~~~~e~~~~~~~ 332 (467)
T KOG1221|consen 320 WGDFIELALRYFE 332 (467)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988875
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-18 Score=172.93 Aligned_cols=217 Identities=14% Similarity=0.071 Sum_probs=144.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
++++|+||||+|+||++++++|+++| ++|+++ .|+.++ +.+ ....+++.+.+|++|.+++.++++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G-~~V~~~--------~r~~~~--l~~-~~~~~~~~~~~Dv~~~~~~~~~~~~~~ 69 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQG-YTVYGA--------ARRVDK--MED-LASLGVHPLSLDVTDEASIKAAVDTII 69 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEE--------eCCHHH--HHH-HHhCCCeEEEeeCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 599984 444321 111 112357899999999998888776
Q ss_pred ----CCCEEEEcccCCC-------CCcchhhHHhhhHHHH----HHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCC
Q 010005 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGA----KNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt----~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
++|+|||+||... ...+++..+++|+.++ ..+++.+++.+.+++|++||...+.
T Consensus 70 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~----------- 138 (273)
T PRK06182 70 AEEGRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGGKI----------- 138 (273)
T ss_pred HhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcC-----------
Confidence 6899999999721 2345678899999985 4555566777778999999975431
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhc---CCCCceEEEEecCccccCCCCCchHHHHHHhcCCCce--------EEecC
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTK--------FIIGS 217 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~---~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~--------~i~g~ 217 (520)
+......|+.+|+..+.+.+.++ ..+|++++++||+.+.++........+.... .+... .....
T Consensus 139 ----~~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 213 (273)
T PRK06182 139 ----YTPLGAWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEWGDIAADHLLKTS-GNGAYAEQAQAVAASMRS 213 (273)
T ss_pred ----CCCCccHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccccchhhhhhhcccc-cccchHHHHHHHHHHHHH
Confidence 11123579999999999876554 3479999999999998875321111110000 00000 00001
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~ 257 (520)
......+..++|+|++++.++. .......|+++.
T Consensus 214 ~~~~~~~~~~~~vA~~i~~~~~------~~~~~~~~~~g~ 247 (273)
T PRK06182 214 TYGSGRLSDPSVIADAISKAVT------ARRPKTRYAVGF 247 (273)
T ss_pred hhccccCCCHHHHHHHHHHHHh------CCCCCceeecCc
Confidence 1123356788999999988887 222334566554
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-18 Score=167.28 Aligned_cols=219 Identities=18% Similarity=0.150 Sum_probs=154.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
++|+|+||||+|+||+++++.|+++| ++|+++++.. .|+... ..+.... ...++.++.+|+.|.+++.++++
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~g-~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 79 (249)
T PRK12827 5 DSRRVLITGGSGGLGRAIAVRLAADG-ADVIVLDIHP----MRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALD 79 (249)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEcCcc----cccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 46899999999999999999999999 5888865432 111110 0000000 12357889999999998887764
Q ss_pred -------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHH-----HCCCCEEEEeecccccccCCCCCC
Q 010005 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR-----ECKVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~-----~~gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
++|+|||+||... ...++...+++|+.++.++++++. +.+.+++|++||...+..
T Consensus 80 ~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~------ 153 (249)
T PRK12827 80 AGVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVRG------ 153 (249)
T ss_pred HHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcCC------
Confidence 5899999999722 223456788999999999999998 556789999999877631
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcc
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (520)
..+...|+.+|+..+.+.+.++.+ .+++++++||+.+.++......+. .......+ .
T Consensus 154 ---------~~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~~--~~~~~~~~---------~ 213 (249)
T PRK12827 154 ---------NRGQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADNAAPT--EHLLNPVP---------V 213 (249)
T ss_pred ---------CCCCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCcccccchH--HHHHhhCC---------C
Confidence 234568999999999888877543 489999999999999865432221 11111111 1
Q ss_pred cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..+.+++|+++++..++... .....|+.+++.++.
T Consensus 214 ~~~~~~~~va~~~~~l~~~~---~~~~~g~~~~~~~g~ 248 (249)
T PRK12827 214 QRLGEPDEVAALVAFLVSDA---ASYVTGQVIPVDGGF 248 (249)
T ss_pred cCCcCHHHHHHHHHHHcCcc---cCCccCcEEEeCCCC
Confidence 23457899999998877521 234567888887653
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=170.23 Aligned_cols=217 Identities=16% Similarity=0.106 Sum_probs=151.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-C-CCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-L-LPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~-l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
++++++||||+|+||++++++|+++| ++|+++ .|+.+.. . ........++..+++|+.|++++.++++
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G-~~v~~~--------~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 74 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREG-ARVVVA--------DRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDF 74 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCC-CeEEEe--------cCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHH
Confidence 46899999999999999999999999 589884 4443210 0 0001112457889999999998887775
Q ss_pred ------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCC
Q 010005 84 ------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 ------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|+|||+++.. ....+++..+++|+.++.++.+++ ++.+.+++|++||...+.
T Consensus 75 i~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~--------- 145 (252)
T PRK06138 75 VAARWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALA--------- 145 (252)
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhcc---------
Confidence 589999999972 122345667899999997776665 556778999999986542
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchH-----HHHHHhcCCCceEEecCC
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-----LLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~-----~l~~~~~~g~~~~i~g~g 218 (520)
+..+.+.|+.+|...|.+++.++.+ .|++++++||+.++++....... ........+ .
T Consensus 146 ------~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~--------~ 211 (252)
T PRK06138 146 ------GGRGRAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFARHADPEALREALRA--------R 211 (252)
T ss_pred ------CCCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhccccChHHHHHHHHh--------c
Confidence 1123568999999999999888654 48999999999999885432111 111110000 1
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
.....|++++|++++++.++... .....|+.+.+.++
T Consensus 212 ~~~~~~~~~~d~a~~~~~l~~~~---~~~~~g~~~~~~~g 248 (252)
T PRK06138 212 HPMNRFGTAEEVAQAALFLASDE---SSFATGTTLVVDGG 248 (252)
T ss_pred CCCCCCcCHHHHHHHHHHHcCch---hcCccCCEEEECCC
Confidence 11234789999999999888632 23456777777654
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-18 Score=168.32 Aligned_cols=218 Identities=14% Similarity=0.073 Sum_probs=153.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC-CCCCcEEEEecCCCHHHHHHHHc-
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL-SSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~-~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
+++++|||||+|+||+++++.|+++| ++|+++ .|++.+. .+...+ ...++.++.+|+.|.+++.++++
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G-~~V~~~--------~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 74 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEG-ARVVVT--------DRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAA 74 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCC-CEEEEE--------eCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 46899999999999999999999999 589994 4443210 000001 02357789999999999987775
Q ss_pred ------CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCC
Q 010005 84 ------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 ------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|+|||+|+... ...+++..+++|+.++.++.+.+.. .+.++||++||...++
T Consensus 75 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-------- 146 (251)
T PRK07231 75 ALERFGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLR-------- 146 (251)
T ss_pred HHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcC--------
Confidence 4799999998721 2234567899999998777776654 5678999999987763
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchH----HHHHHhcCCCceEEecCC
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP----LLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~----~l~~~~~~g~~~~i~g~g 218 (520)
+..+...|+.+|...+.+++.++.+ .+++++++||+.+.++....... ........ +
T Consensus 147 -------~~~~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~---------~ 210 (251)
T PRK07231 147 -------PRPGLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMGEPTPENRAKFLA---------T 210 (251)
T ss_pred -------CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhcccChHHHHHHhc---------C
Confidence 2234678999999999888877543 48999999999997664322111 11111111 1
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
.+...+++++|+|++++.++... .....|+.+.+.++..
T Consensus 211 ~~~~~~~~~~dva~~~~~l~~~~---~~~~~g~~~~~~gg~~ 249 (251)
T PRK07231 211 IPLGRLGTPEDIANAALFLASDE---ASWITGVTLVVDGGRC 249 (251)
T ss_pred CCCCCCcCHHHHHHHHHHHhCcc---ccCCCCCeEEECCCcc
Confidence 22346789999999999988621 1234577778876543
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-18 Score=166.77 Aligned_cols=217 Identities=14% Similarity=0.119 Sum_probs=152.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
++++||||||+|+||++++++|+++| ++|+++++ +... ..+.+.+ ...++.++.+|++|.+++.++++
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g-~~v~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 72 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEG-AKVAVFDL--------NREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVA 72 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEecC--------CHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 46899999999999999999999999 59998543 3221 0000000 12457889999999998887765
Q ss_pred -------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCC
Q 010005 84 -------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 -------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|+|||+++.. .....++..+++|+.++.++++++. +.+.+++|++||...++..
T Consensus 73 ~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~~------ 146 (250)
T TIGR03206 73 AAEQALGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVGS------ 146 (250)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccCC------
Confidence 589999999862 1223346679999999999988875 4567899999998876321
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch------HHHHHHhcCCCceEEec
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV------PLLVNLAKPGWTKFIIG 216 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~------~~l~~~~~~g~~~~i~g 216 (520)
.....|+.+|+..|.+.+.++.+ .+++++++||+.++++...... ..+...+....+
T Consensus 147 ---------~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 212 (250)
T TIGR03206 147 ---------SGEAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGGAENPEKLREAFTRAIP----- 212 (250)
T ss_pred ---------CCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhccCChHHHHHHHHhcCC-----
Confidence 23457999999999888877654 4899999999999987422110 111222222111
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
...+...+|+|+++..++.. ......|++++++++.
T Consensus 213 ----~~~~~~~~dva~~~~~l~~~---~~~~~~g~~~~~~~g~ 248 (250)
T TIGR03206 213 ----LGRLGQPDDLPGAILFFSSD---DASFITGQVLSVSGGL 248 (250)
T ss_pred ----ccCCcCHHHHHHHHHHHcCc---ccCCCcCcEEEeCCCc
Confidence 12345689999999987751 1234568899998753
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-17 Score=163.03 Aligned_cols=228 Identities=20% Similarity=0.174 Sum_probs=174.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCEE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~V 88 (520)
|+||||||||++|++++++|+++| ++|++ ..|++.+... .. .+++...+|+.|+..+...++|+|.+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~-~~v~~--------~~r~~~~~~~---~~-~~v~~~~~d~~~~~~l~~a~~G~~~~ 67 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARG-HEVRA--------AVRNPEAAAA---LA-GGVEVVLGDLRDPKSLVAGAKGVDGV 67 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCC-CEEEE--------EEeCHHHHHh---hc-CCcEEEEeccCCHhHHHHHhccccEE
Confidence 589999999999999999999999 59999 6676553211 12 68999999999999999999999999
Q ss_pred EEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHH
Q 010005 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAE 168 (520)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E 168 (520)
+++.+... ... ...........+..+++. .+++++++.|...+- ......|..+|..+|
T Consensus 68 ~~i~~~~~-~~~--~~~~~~~~~~~~~a~~a~-~~~~~~~~~s~~~~~-----------------~~~~~~~~~~~~~~e 126 (275)
T COG0702 68 LLISGLLD-GSD--AFRAVQVTAVVRAAEAAG-AGVKHGVSLSVLGAD-----------------AASPSALARAKAAVE 126 (275)
T ss_pred EEEecccc-ccc--chhHHHHHHHHHHHHHhc-CCceEEEEeccCCCC-----------------CCCccHHHHHHHHHH
Confidence 99998643 222 233444555556666555 558889999877652 123568999999999
Q ss_pred HHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccC
Q 010005 169 ALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSV 248 (520)
Q Consensus 169 ~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~ 248 (520)
+.+.. .|++++++|+..+|....... .......+.+....+. ...+++.++|++.++..++. .+..
T Consensus 127 ~~l~~----sg~~~t~lr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~i~~~d~a~~~~~~l~-----~~~~ 192 (275)
T COG0702 127 AALRS----SGIPYTTLRRAAFYLGAGAAF---IEAAEAAGLPVIPRGI--GRLSPIAVDDVAEALAAALD-----APAT 192 (275)
T ss_pred HHHHh----cCCCeEEEecCeeeeccchhH---HHHHHhhCCceecCCC--CceeeeEHHHHHHHHHHHhc-----CCcc
Confidence 99988 689999999888776544322 2233344444333333 37899999999999998887 3557
Q ss_pred CCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCC
Q 010005 249 AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLP 284 (520)
Q Consensus 249 ~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p 284 (520)
.+++|.+++++..+..|+++.+.+..|++...++.|
T Consensus 193 ~~~~~~l~g~~~~~~~~~~~~l~~~~gr~~~~~~~~ 228 (275)
T COG0702 193 AGRTYELAGPEALTLAELASGLDYTIGRPVGLIPEA 228 (275)
T ss_pred cCcEEEccCCceecHHHHHHHHHHHhCCcceeeCCc
Confidence 789999999999999999999999999987665444
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-18 Score=167.02 Aligned_cols=220 Identities=13% Similarity=0.015 Sum_probs=154.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
+++++|||||+|+||+++++.|+++| ++|+++++ +.++. .....+ ...++.++.+|++|.+++.++++
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G-~~V~~~~r--------~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~ 81 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAG-ARVVLSAR--------KAEELEEAAAHLEALGIDALWIAADVADEADIERLAE 81 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcC-CEEEEEeC--------CHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 46899999999999999999999999 58988544 32210 000000 12356789999999998866654
Q ss_pred -------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHC-----CCCEEEEeecccccccCCCCCC
Q 010005 84 -------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC-----KVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 84 -------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~-----gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
+.|+|||+|+.. .....+...+++|+.++.++++++... +.+++|++||...+.....
T Consensus 82 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~--- 158 (259)
T PRK08213 82 ETLERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPP--- 158 (259)
T ss_pred HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCc---
Confidence 479999999862 122345667889999999999988654 5679999999876532110
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcc
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (520)
...+...|+.+|+..|.+++.++.+ +|+++.+++|+.+-.+......+.+.+......++.
T Consensus 159 --------~~~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~-------- 222 (259)
T PRK08213 159 --------EVMDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMTRGTLERLGEDLLAHTPLG-------- 222 (259)
T ss_pred --------cccCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcchhhhhHHHHHHHHhcCCCC--------
Confidence 1134578999999999998887543 589999999998877655445555544444333322
Q ss_pred cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
-+...+|+++++..++.. ......|+.+++.++
T Consensus 223 -~~~~~~~va~~~~~l~~~---~~~~~~G~~~~~~~~ 255 (259)
T PRK08213 223 -RLGDDEDLKGAALLLASD---ASKHITGQILAVDGG 255 (259)
T ss_pred -CCcCHHHHHHHHHHHhCc---cccCccCCEEEECCC
Confidence 233489999988877751 123456888888765
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.4e-18 Score=168.78 Aligned_cols=221 Identities=14% Similarity=0.099 Sum_probs=156.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
++|+||||||+|+||+++++.|.++| ++|++.++.. .... ....+.+ ...++..+.+|++|.+++.++++
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G-~~V~i~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 126 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREG-ADIALNYLPE------EEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVE 126 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcC-CEEEEEeCCc------chHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH
Confidence 45899999999999999999999999 5888743321 1000 0000111 12356788999999988877664
Q ss_pred -------CCCEEEEcccCC--------CCCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCCCCCC
Q 010005 84 -------GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 -------~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|+|||+||.. .+..+++..+++|+.++.++++++... .-.++|++||...|..
T Consensus 127 ~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~-------- 198 (300)
T PRK06128 127 RAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQP-------- 198 (300)
T ss_pred HHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCC--------
Confidence 589999999962 123467789999999999999999764 2258999999988731
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCC--chHHHHHHhcCCCceEEecCCCcc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKPGWTKFIIGSGENM 221 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~--~~~~l~~~~~~g~~~~i~g~g~~~ 221 (520)
......|+.+|+..+.+.+.++.+ +|+++.+++|+.+.+|.... ............ ...
T Consensus 199 -------~~~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~---------~p~ 262 (300)
T PRK06128 199 -------SPTLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSGGQPPEKIPDFGSE---------TPM 262 (300)
T ss_pred -------CCCchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccCCCCHHHHHHHhcC---------CCC
Confidence 123457999999999998887654 68999999999999985421 112222222211 223
Q ss_pred cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
..+.+.+|++.+++.++.. ......|+.|+++++..+
T Consensus 263 ~r~~~p~dva~~~~~l~s~---~~~~~~G~~~~v~gg~~~ 299 (300)
T PRK06128 263 KRPGQPVEMAPLYVLLASQ---ESSYVTGEVFGVTGGLLL 299 (300)
T ss_pred CCCcCHHHHHHHHHHHhCc---cccCccCcEEeeCCCEeC
Confidence 3467899999999987651 123456899999987644
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.9e-18 Score=164.46 Aligned_cols=219 Identities=15% Similarity=0.114 Sum_probs=151.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
++++++||||+|+||+++++.|+++| ++|++. ..|+..+. .+.+.+ ...++.++.+|++|++++.++++
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l~~~g-~~v~~~-------~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRLAEEG-YDIAVN-------YARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFA 74 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEE-------cCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 35799999999999999999999999 577653 23332210 000000 12357889999999998887776
Q ss_pred -------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCC
Q 010005 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|+|||+|+... ........+++|+.++.++++++.. .+.++||++||...+.
T Consensus 75 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~-------- 146 (250)
T PRK08063 75 QIDEEFGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIR-------- 146 (250)
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcc--------
Confidence 4799999998621 1223345788999999999988875 4566999999976541
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc--hHHHHHHhcCCCceEEecCCCc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGEN 220 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~--~~~l~~~~~~g~~~~i~g~g~~ 220 (520)
+..+...|+.+|+..|.+++.++.+ .|+++++++|+.+..+..... ...+........ .
T Consensus 147 -------~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~---------~ 210 (250)
T PRK08063 147 -------YLENYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKHFPNREELLEDARAKT---------P 210 (250)
T ss_pred -------CCCCccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhhccCchHHHHHHhcCC---------C
Confidence 2234568999999999998877543 689999999999987643211 011111111111 1
Q ss_pred ccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
...+++.+|+|++++.++... .....|+.+++.++..
T Consensus 211 ~~~~~~~~dva~~~~~~~~~~---~~~~~g~~~~~~gg~~ 247 (250)
T PRK08063 211 AGRMVEPEDVANAVLFLCSPE---ADMIRGQTIIVDGGRS 247 (250)
T ss_pred CCCCcCHHHHHHHHHHHcCch---hcCccCCEEEECCCee
Confidence 224788999999999887621 1345688999988654
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-17 Score=160.01 Aligned_cols=217 Identities=16% Similarity=0.126 Sum_probs=150.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC--CCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS--LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~--~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
++++|+||||+|+||+++++.|+++| ++|+++ .|+..+. .....+ ...++..+.+|+.|.+++.+++
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~G-~~v~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 74 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQG-ANVVIN--------YASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAV 74 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEE--------eCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 45899999999999999999999999 588773 3322210 000000 1246788899999999887776
Q ss_pred c-------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHC----CCCEEEEeecccccccCCCCCC
Q 010005 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~----gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
+ ++|+|||+|+... ....++..+++|+.++.++++++... +.+++|++||...+.
T Consensus 75 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~------- 147 (248)
T PRK05557 75 DEAKAEFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLM------- 147 (248)
T ss_pred HHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCc-------
Confidence 5 5799999998721 11245667889999999999888753 567899999974331
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcc
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (520)
+......|+.+|...|.+++.++. ..+++++++||+.+.++......+.......... ..
T Consensus 148 --------~~~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~~~~~~~~~~~~~~~---------~~ 210 (248)
T PRK05557 148 --------GNPGQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMTDALPEDVKEAILAQI---------PL 210 (248)
T ss_pred --------CCCCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCccccccChHHHHHHHhcC---------CC
Confidence 112346799999999988776543 3589999999998876544333333333322221 12
Q ss_pred cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..+.+++|+++++..++.. ......|+.|+++++.
T Consensus 211 ~~~~~~~~va~~~~~l~~~---~~~~~~g~~~~i~~~~ 245 (248)
T PRK05557 211 GRLGQPEEIASAVAFLASD---EAAYITGQTLHVNGGM 245 (248)
T ss_pred CCCcCHHHHHHHHHHHcCc---ccCCccccEEEecCCc
Confidence 3467899999999877752 1245678899998753
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.8e-18 Score=166.87 Aligned_cols=218 Identities=18% Similarity=0.161 Sum_probs=154.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
++++||||||+|.||+++++.|.++| ++|++++ |+..............+..+.+|++|.+++.++++
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G-~~Vi~~~--------r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 84 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKG-ARVALLD--------RSEDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVI 84 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEe--------CCHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5899844 43221111111123456789999999998877765
Q ss_pred ----CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCCCCC
Q 010005 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
++|+|||+||... ...++...+++|+.++.++++++.. .+.+++|++||.....
T Consensus 85 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~----------- 153 (255)
T PRK06841 85 SAFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVV----------- 153 (255)
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhcc-----------
Confidence 5799999999721 1234566899999999999999864 3567999999976431
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchH-HHHHHhcCCCceEEecCCCccccc
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-LLVNLAKPGWTKFIIGSGENMSDF 224 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~-~l~~~~~~g~~~~i~g~g~~~~~~ 224 (520)
+......|+.+|+..|.+.+.++.+ .|+++.+++|+.+..+....... ........ +.....+
T Consensus 154 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~---------~~~~~~~ 220 (255)
T PRK06841 154 ----ALERHVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKKAWAGEKGERAKK---------LIPAGRF 220 (255)
T ss_pred ----CCCCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCcccccccchhHHHHHHh---------cCCCCCC
Confidence 1123468999999999888877654 58999999999998764321111 01111111 1223457
Q ss_pred ccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 225 i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
.+++|++++++.++.. ......|+.+.+.++..
T Consensus 221 ~~~~~va~~~~~l~~~---~~~~~~G~~i~~dgg~~ 253 (255)
T PRK06841 221 AYPEEIAAAALFLASD---AAAMITGENLVIDGGYT 253 (255)
T ss_pred cCHHHHHHHHHHHcCc---cccCccCCEEEECCCcc
Confidence 8899999999988862 12456788888887653
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-18 Score=170.57 Aligned_cols=217 Identities=13% Similarity=0.091 Sum_probs=153.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCC--CCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLS--SGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~--~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
++|+|+||||+|+||++++++|+++| ++|+++|+ ++.. ..+...+. ..++..+.+|++|.+++.++++
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G-~~V~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAG-ADVVLAAR--------TAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVA 74 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcC-CEEEEEeC--------CHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHH
Confidence 46899999999999999999999999 59999554 3221 01111111 2357889999999988877664
Q ss_pred -------CCCEEEEcccCC--------CCCcchhhHHhhhHHHHHHHHHHHHHC---CCCEEEEeecccccccCCCCCCC
Q 010005 84 -------GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 -------~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~ll~aa~~~---gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|+|||+|+.. ....+++..+++|+.++..+++++... ..+++|++||...+.
T Consensus 75 ~~~~~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~-------- 146 (258)
T PRK07890 75 LALERFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRH-------- 146 (258)
T ss_pred HHHHHcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhcc--------
Confidence 579999999862 122456778999999999999999753 125899999986642
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchH-----------HHHHHhcCCCc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-----------LLVNLAKPGWT 211 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~-----------~l~~~~~~g~~ 211 (520)
+..+...|+.+|...|.+++.++.+ ++++++++||+.++||.....+. .......+
T Consensus 147 -------~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 216 (258)
T PRK07890 147 -------SQPKYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAA--- 216 (258)
T ss_pred -------CCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHHHhh---
Confidence 2234578999999999999888643 58999999999999986322111 11111111
Q ss_pred eEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 212 KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 212 ~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
......+.+++|+++++..++... .....|+.+.+.++.
T Consensus 217 ------~~~~~~~~~~~dva~a~~~l~~~~---~~~~~G~~i~~~gg~ 255 (258)
T PRK07890 217 ------NSDLKRLPTDDEVASAVLFLASDL---ARAITGQTLDVNCGE 255 (258)
T ss_pred ------cCCccccCCHHHHHHHHHHHcCHh---hhCccCcEEEeCCcc
Confidence 122335788999999998887621 134667777776654
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.9e-18 Score=163.97 Aligned_cols=223 Identities=15% Similarity=0.133 Sum_probs=147.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-----CCCCCCCCCCcEEEEecCCCHHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-----LLPDSLSSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-----~l~~~~~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
++|+|+||||+|.||+++++.|.++| ++|+++ .|+..+. .+........+.++.+|+.|++++.++
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g-~~v~~~--------~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~ 73 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAG-GIVIAA--------DIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEF 73 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEE--------ecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHH
Confidence 36899999999999999999999999 589884 4432210 010111123456779999999988887
Q ss_pred HcC-------CCEEEEcccCC----------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCC
Q 010005 82 LEG-------ASTVFYVDATD----------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGS 140 (520)
Q Consensus 82 l~~-------~D~Vih~aa~~----------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~ 140 (520)
+++ +|+|||+|+.. .+...+...+++|+.++..+++++ ++.+.+++|++||...+....
T Consensus 74 ~~~~~~~~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~ 153 (256)
T PRK09186 74 LSKSAEKYGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPK 153 (256)
T ss_pred HHHHHHHcCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhcccc
Confidence 763 79999999741 112345667888888877665554 455778999999976543211
Q ss_pred CCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecC
Q 010005 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGS 217 (520)
Q Consensus 141 ~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~ 217 (520)
. ...++. +..+...|+.+|...|.+.+.++. ..|+++++++|+.++++.... +........
T Consensus 154 ~---~~~~~~--~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~~~----~~~~~~~~~------- 217 (256)
T PRK09186 154 F---EIYEGT--SMTSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQPEA----FLNAYKKCC------- 217 (256)
T ss_pred c---hhcccc--ccCCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCCCHH----HHHHHHhcC-------
Confidence 1 111222 222334799999999998875544 368999999999988654211 222221111
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
....+++++|+|++++.++... .....|+.+.+.++.
T Consensus 218 --~~~~~~~~~dva~~~~~l~~~~---~~~~~g~~~~~~~g~ 254 (256)
T PRK09186 218 --NGKGMLDPDDICGTLVFLLSDQ---SKYITGQNIIVDDGF 254 (256)
T ss_pred --CccCCCCHHHhhhhHhheeccc---cccccCceEEecCCc
Confidence 1134788999999999888621 234567777777653
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.9e-18 Score=165.34 Aligned_cols=217 Identities=13% Similarity=0.084 Sum_probs=147.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHHc-
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
++++|||||+|+||++++++|+++| +.|++.+. |++.. ......+ ...++.++.+|++|.+++.++++
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G-~~vv~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERG-YAVCLNYL-------RNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEA 73 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC-CeEEEecC-------CCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHH
Confidence 4689999999999999999999999 57776432 21110 0010101 12356789999999998887775
Q ss_pred ------CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHHHHCC-------CCEEEEeecccccccCCCC
Q 010005 84 ------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRECK-------VRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 84 ------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa~~~g-------vkr~V~~SS~~vyg~~~~~ 142 (520)
.+|+|||+|+... ...++...+++|+.++.++++++.+.- -.++|++||...+....
T Consensus 74 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~-- 151 (248)
T PRK06123 74 VDRELGRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSP-- 151 (248)
T ss_pred HHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCC--
Confidence 5799999998721 122445789999999999998886531 13699999976541100
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCC-CchHHHHHHhcCCCceEEecCC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT-QLVPLLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~-~~~~~l~~~~~~g~~~~i~g~g 218 (520)
.....|+.+|+..|.+++.++.+ +|++++++||+.++||... ...+..........+.
T Consensus 152 ------------~~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~~~~~~~~~~~~~~p~------ 213 (248)
T PRK06123 152 ------------GEYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASGGEPGRVDRVKAGIPM------ 213 (248)
T ss_pred ------------CCccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhccCCHHHHHHHHhcCCC------
Confidence 11235999999999988877543 5899999999999998542 2223333333322221
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
.-+.+++|+++++..++.. ......|+.|++.++
T Consensus 214 ---~~~~~~~d~a~~~~~l~~~---~~~~~~g~~~~~~gg 247 (248)
T PRK06123 214 ---GRGGTAEEVARAILWLLSD---EASYTTGTFIDVSGG 247 (248)
T ss_pred ---CCCcCHHHHHHHHHHHhCc---cccCccCCEEeecCC
Confidence 1224689999999988762 112367889999765
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-17 Score=162.65 Aligned_cols=229 Identities=17% Similarity=0.128 Sum_probs=154.8
Q ss_pred CCCC-CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHH
Q 010005 1 MPFD-EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIK 79 (520)
Q Consensus 1 m~~~-~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~ 79 (520)
|++. ..++++||||||+|.||++++++|.++| ++|+++ .|+.... ...++.++.+|+.|.+++.
T Consensus 1 ~~~~~~~~~k~vlItGas~gIG~~ia~~l~~~G-~~v~~~--------~r~~~~~------~~~~~~~~~~D~~~~~~~~ 65 (260)
T PRK06523 1 MSFFLELAGKRALVTGGTKGIGAATVARLLEAG-ARVVTT--------ARSRPDD------LPEGVEFVAADLTTAEGCA 65 (260)
T ss_pred CCcCcCCCCCEEEEECCCCchhHHHHHHHHHCC-CEEEEE--------eCChhhh------cCCceeEEecCCCCHHHHH
Confidence 4443 4567999999999999999999999999 589994 4433211 1235788999999998776
Q ss_pred HHHc-------CCCEEEEcccCC---------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccC
Q 010005 80 KVLE-------GASTVFYVDATD---------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDG 139 (520)
Q Consensus 80 ~~l~-------~~D~Vih~aa~~---------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~ 139 (520)
++++ ++|+|||+||.. ....+++..+++|+.++.++.+++ ++.+..++|++||...+..
T Consensus 66 ~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~- 144 (260)
T PRK06523 66 AVARAVLERLGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRLP- 144 (260)
T ss_pred HHHHHHHHHcCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccCC-
Confidence 5543 579999999852 123456778999999998876655 4455678999999866421
Q ss_pred CCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCC-----Cc
Q 010005 140 SHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPG-----WT 211 (520)
Q Consensus 140 ~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g-----~~ 211 (520)
...+...|+.+|+..|.+.+.++.+ .|+++.+++|+.+.++......+.+.+..... +.
T Consensus 145 -------------~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~ 211 (260)
T PRK06523 145 -------------LPESTTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAAVALAERLAEAAGTDYEGAKQI 211 (260)
T ss_pred -------------CCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccHHHHHHHHHhhcCCCHHHHHHH
Confidence 0124578999999999988877643 58999999999999875422211111000000 00
Q ss_pred e-EEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC
Q 010005 212 K-FIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (520)
Q Consensus 212 ~-~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t 262 (520)
+ ... .+.....+...+|+++++..++.. ......|+.+.+.++...+
T Consensus 212 ~~~~~-~~~p~~~~~~~~~va~~~~~l~s~---~~~~~~G~~~~vdgg~~~~ 259 (260)
T PRK06523 212 IMDSL-GGIPLGRPAEPEEVAELIAFLASD---RAASITGTEYVIDGGTVPT 259 (260)
T ss_pred HHHHh-ccCccCCCCCHHHHHHHHHHHhCc---ccccccCceEEecCCccCC
Confidence 0 000 001122355689999999988751 1245678899998876543
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.8e-17 Score=157.62 Aligned_cols=208 Identities=18% Similarity=0.072 Sum_probs=147.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
++|+|+||||+|+||++++++|.++| ++|++ +.|+.... ...+++.+|+.|.+++.++++
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G-~~v~~--------~~r~~~~~--------~~~~~~~~D~~~~~~~~~~~~~~~ 64 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLG-HQVIG--------IARSAIDD--------FPGELFACDLADIEQTAATLAQIN 64 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCC-CEEEE--------EeCCcccc--------cCceEEEeeCCCHHHHHHHHHHHH
Confidence 35899999999999999999999999 59998 44443321 112578999999998887776
Q ss_pred ---CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCCCCC
Q 010005 84 ---GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDET 149 (520)
Q Consensus 84 ---~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~ 149 (520)
++|+|||+++... ...++...+++|+.++.++.+++ ++.+.+++|++||...|+.
T Consensus 65 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~----------- 133 (234)
T PRK07577 65 EIHPVDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAIFGA----------- 133 (234)
T ss_pred HhCCCcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccccccCC-----------
Confidence 6899999999721 23455678899999988876665 4567789999999877631
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCc---hHHHHHHhcCCCceEEecCCCcccc
Q 010005 150 LTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL---VPLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 150 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~---~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
.....|+.+|...|.+++.++. ++|++++++||+.+..+..... .+.......... ....
T Consensus 134 -----~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~---------~~~~ 199 (234)
T PRK07577 134 -----LDRTSYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQTRPVGSEEEKRVLASI---------PMRR 199 (234)
T ss_pred -----CCchHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCcccccccccchhHHHHHhhcC---------CCCC
Confidence 1246899999999988877643 3589999999999987643211 111111111111 1112
Q ss_pred cccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
....+|+|++++.++... .....|+.+.+.++.
T Consensus 200 ~~~~~~~a~~~~~l~~~~---~~~~~g~~~~~~g~~ 232 (234)
T PRK07577 200 LGTPEEVAAAIAFLLSDD---AGFITGQVLGVDGGG 232 (234)
T ss_pred CcCHHHHHHHHHHHhCcc---cCCccceEEEecCCc
Confidence 446899999999888621 234668888887654
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=162.00 Aligned_cols=215 Identities=16% Similarity=0.140 Sum_probs=146.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
+++++++||||+|+||++++++|+++| ++|+++ .|+... ....+.. ..++.++++|+.|.+++.++++
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g-~~v~~~--------~r~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~ 73 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEG-ARVAIT--------GRDPASLEAARAEL-GESALVIRADAGDVAAQKALAQA 73 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEe--------cCCHHHHHHHHHHh-CCceEEEEecCCCHHHHHHHHHH
Confidence 456899999999999999999999999 589884 443221 0000111 2356788999999887665543
Q ss_pred ------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeeccc-ccccCCCCCCCCC
Q 010005 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTAD-VVFDGSHDIHNGD 147 (520)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~-vyg~~~~~~~~~~ 147 (520)
++|+|||+|+... ...+++..+++|+.++.++++++... ...++|++||.. .|+
T Consensus 74 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~---------- 143 (249)
T PRK06500 74 LAEAFGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIG---------- 143 (249)
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccC----------
Confidence 5899999998721 22456778999999999999999752 234677777744 332
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCC------CchHHHHHHhcCCCceEEecCC
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~------~~~~~l~~~~~~g~~~~i~g~g 218 (520)
..+.+.|+.+|+..|.+++.++.+ .|++++++||+.+++|... ...+.+.+....+.++
T Consensus 144 ------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~------ 211 (249)
T PRK06500 144 ------MPNSSVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKLGLPEATLDAVAAQIQALVPL------ 211 (249)
T ss_pred ------CCCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhhccCccchHHHHHHHHhcCCC------
Confidence 123578999999999999776543 5899999999999987421 1122233333332221
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
.-+..++|+++++..++.. ......|+...+.++
T Consensus 212 ---~~~~~~~~va~~~~~l~~~---~~~~~~g~~i~~~gg 245 (249)
T PRK06500 212 ---GRFGTPEEIAKAVLYLASD---ESAFIVGSEIIVDGG 245 (249)
T ss_pred ---CCCcCHHHHHHHHHHHcCc---cccCccCCeEEECCC
Confidence 1244689999999987751 112345666666554
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.6e-18 Score=187.42 Aligned_cols=229 Identities=18% Similarity=0.151 Sum_probs=160.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCC-CCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS-SGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~-~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
.++++||||||+|+||+++++.|.++| ++|+++|+.... .. .....+. ..++..+.+|++|.+++.++++
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~G-a~Vvl~~r~~~~----~~---~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~ 491 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEG-ACVVLADLDEEA----AE---AAAAELGGPDRALGVACDVTDEAAVQAAFEE 491 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCc-CEEEEEeCCHHH----HH---HHHHHHhccCcEEEEEecCCCHHHHHHHHHH
Confidence 356899999999999999999999999 599996553210 00 0000011 1367889999999998887765
Q ss_pred ------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHH----HCCC-CEEEEeecccccccCCCCCCC
Q 010005 84 ------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECKV-RRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 ------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gv-kr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|+|||+||.. .....+...+++|+.++.++++++. +.+. .++|++||...+.
T Consensus 492 ~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~-------- 563 (681)
T PRK08324 492 AALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVN-------- 563 (681)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccC--------
Confidence 689999999962 2234567789999999999977774 4444 6899999987652
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccc-cCCCCCchHHHHHHhcCCCce----EEecC
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVF-GPGDTQLVPLLVNLAKPGWTK----FIIGS 217 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vy-Gp~~~~~~~~l~~~~~~g~~~----~i~g~ 217 (520)
+......|+.+|+..|.+++.++.+ .|+++.+++|+.+| +++...-..........+... ....+
T Consensus 564 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 636 (681)
T PRK08324 564 -------PGPNFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTGEWIEARAAAYGLSEEELEEFYRA 636 (681)
T ss_pred -------CCCCcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCccccchhhhhhhhhccCChHHHHHHHHh
Confidence 1223568999999999999887543 57999999999998 554211000001111112111 12345
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
+...+++++++|+|+++..++.. ......|++++++++..
T Consensus 637 ~~~l~~~v~~~DvA~a~~~l~s~---~~~~~tG~~i~vdgG~~ 676 (681)
T PRK08324 637 RNLLKREVTPEDVAEAVVFLASG---LLSKTTGAIITVDGGNA 676 (681)
T ss_pred cCCcCCccCHHHHHHHHHHHhCc---cccCCcCCEEEECCCch
Confidence 66778999999999999988731 02456788999998764
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.2e-18 Score=160.98 Aligned_cols=204 Identities=14% Similarity=0.056 Sum_probs=141.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
++|+++||||+|+||+++++.|+++ + +|++++ |+.... .+.+. .++++++++|+.|.+++.++++
T Consensus 2 ~~~~vlVtG~~g~iG~~l~~~l~~~-~-~V~~~~--------r~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~ 69 (227)
T PRK08219 2 ERPTALITGASRGIGAAIARELAPT-H-TLLLGG--------RPAERLDELAAE--LPGATPFPVDLTDPEAIAAAVEQL 69 (227)
T ss_pred CCCEEEEecCCcHHHHHHHHHHHhh-C-CEEEEe--------CCHHHHHHHHHH--hccceEEecCCCCHHHHHHHHHhc
Confidence 4579999999999999999999998 5 899944 443210 01111 1357889999999999998887
Q ss_pred -CCCEEEEcccCCCC-------CcchhhHHhhhHHHH----HHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCcc
Q 010005 84 -GASTVFYVDATDLN-------TDDFYNCYMIIVQGA----KNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLT 151 (520)
Q Consensus 84 -~~D~Vih~aa~~~~-------~~~~~~~~~~Nv~gt----~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~ 151 (520)
++|+|||+++.... ..++...++.|+.+. .++++++++.+ +++|++||...++.
T Consensus 70 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~v~~ss~~~~~~------------- 135 (227)
T PRK08219 70 GRLDVLVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAH-GHVVFINSGAGLRA------------- 135 (227)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CeEEEEcchHhcCc-------------
Confidence 58999999987221 123455688888884 45555555554 68999999877631
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhcCC-CC-ceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHH
Q 010005 152 CCWKFQDLMCDLKAQAEALVLFANNI-DG-LLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVEN 229 (520)
Q Consensus 152 ~~~~p~~~Y~~sK~~~E~~~~~~~~~-~g-i~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~D 229 (520)
..+...|+.+|...|.+++.++.. .+ +++.+++|+.+.++..... ... .+. ......+++++|
T Consensus 136 --~~~~~~y~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~----~~~--~~~-------~~~~~~~~~~~d 200 (227)
T PRK08219 136 --NPGWGSYAASKFALRALADALREEEPGNVRVTSVHPGRTDTDMQRGL----VAQ--EGG-------EYDPERYLRPET 200 (227)
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCccchHhhhh----hhh--hcc-------ccCCCCCCCHHH
Confidence 123568999999999888776542 24 8999999987765432111 100 011 112346899999
Q ss_pred HHHHHHHHHHhhhcccccCCCceEEEeC
Q 010005 230 VAHAHVCAAEALDSRMVSVAGMAFFITN 257 (520)
Q Consensus 230 va~ai~~~~~~~~~~~~~~~g~~yni~~ 257 (520)
++++++.+++ ....+.++++.-
T Consensus 201 va~~~~~~l~------~~~~~~~~~~~~ 222 (227)
T PRK08219 201 VAKAVRFAVD------APPDAHITEVVV 222 (227)
T ss_pred HHHHHHHHHc------CCCCCccceEEE
Confidence 9999999987 344566777754
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=162.18 Aligned_cols=218 Identities=14% Similarity=0.118 Sum_probs=154.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
+++++++||||+|.||+++++.|+++| ++|++++ |++.+. ...+.+ ...++..+.+|+.|.+++.+++
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G-~~v~~~~--------r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 75 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAG-ATVAFND--------GLAAEARELAAALEAAGGRAHAIAADLADPASVQRFF 75 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcC-CEEEEEe--------CCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 456899999999999999999999999 5888844 332200 000000 1235788999999999888777
Q ss_pred c-------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHC----CCCEEEEeecccccccCCCCCC
Q 010005 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~----gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
+ ++|+|||+++... ...+++..++.|+.++.++++++... +..++|++||...+.
T Consensus 76 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------- 148 (250)
T PRK12939 76 DAAAAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALW------- 148 (250)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhcc-------
Confidence 4 5899999998721 22345667889999999999988643 345999999976542
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchH-HHHHHhcCCCceEEecCCCc
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVP-LLVNLAKPGWTKFIIGSGEN 220 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~-~l~~~~~~g~~~~i~g~g~~ 220 (520)
+......|+.+|+..|.+++.++. ..++++++++|+.+..+......+ .+...... +..
T Consensus 149 --------~~~~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~---------~~~ 211 (250)
T PRK12939 149 --------GAPKLGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAYVPADERHAYYLK---------GRA 211 (250)
T ss_pred --------CCCCcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccccCChHHHHHHHh---------cCC
Confidence 112346799999999999887653 358999999999988775432211 22222221 223
Q ss_pred ccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
...+++++|+|++++.++... .....|+.+.+.++.
T Consensus 212 ~~~~~~~~dva~~~~~l~~~~---~~~~~G~~i~~~gg~ 247 (250)
T PRK12939 212 LERLQVPDDVAGAVLFLLSDA---ARFVTGQLLPVNGGF 247 (250)
T ss_pred CCCCCCHHHHHHHHHHHhCcc---ccCccCcEEEECCCc
Confidence 456889999999999988621 134678899988764
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-17 Score=160.14 Aligned_cols=219 Identities=14% Similarity=0.096 Sum_probs=152.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC--CCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~--~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
+++|+||||+|+||+++++.|.++| ++|+++++... +....+... ....++.++.+|+.|.+++.++++
T Consensus 2 ~k~vlItG~s~~iG~~la~~l~~~g-~~vi~~~r~~~------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 74 (245)
T PRK12824 2 KKIALVTGAKRGIGSAIARELLNDG-YRVIATYFSGN------DCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEI 74 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCcH------HHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 4689999999999999999999999 69999654321 000000000 012357889999999988877765
Q ss_pred -----CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHH----HHHCCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~a----a~~~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|+|||+++.. ....+++.++++|+.++.++.++ +++.+.+++|++||...++.
T Consensus 75 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~--------- 145 (245)
T PRK12824 75 EEEEGPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLKG--------- 145 (245)
T ss_pred HHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhccC---------
Confidence 479999999862 22345667889999999998554 46666789999999876521
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (520)
......|+.+|+..+.+.+.++. ..|+++++++|+.+.++..+...+.......... ....+
T Consensus 146 ------~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~---------~~~~~ 210 (245)
T PRK12824 146 ------QFGQTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVEQMGPEVLQSIVNQI---------PMKRL 210 (245)
T ss_pred ------CCCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchhhcCHHHHHHHHhcC---------CCCCC
Confidence 12345799999999988777653 3589999999999988754333233222222211 12335
Q ss_pred ccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 225 i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
..++|+++++..++.. ......|+.++++++..
T Consensus 211 ~~~~~va~~~~~l~~~---~~~~~~G~~~~~~~g~~ 243 (245)
T PRK12824 211 GTPEEIAAAVAFLVSE---AAGFITGETISINGGLY 243 (245)
T ss_pred CCHHHHHHHHHHHcCc---cccCccCcEEEECCCee
Confidence 5689999999887752 12346789999988764
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.3e-17 Score=159.30 Aligned_cols=159 Identities=14% Similarity=0.110 Sum_probs=125.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC---
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--- 84 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~--- 84 (520)
+++|+||||+|+||++++++|.++| ++|++. .|+.... . ...+++++++|++|++++.+++++
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g-~~V~~~--------~r~~~~~--~---~~~~~~~~~~D~~d~~~~~~~~~~~~~ 69 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAG-YRVFGT--------SRNPARA--A---PIPGVELLELDVTDDASVQAAVDEVIA 69 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCC-CEEEEE--------eCChhhc--c---ccCCCeeEEeecCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999 589984 4443211 1 123678999999999998888763
Q ss_pred ----CCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCCCCC
Q 010005 85 ----ASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDET 149 (520)
Q Consensus 85 ----~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~ 149 (520)
+|+|||+||.. ....++...+++|+.|+.++++++ ++.+.+++|++||...+.
T Consensus 70 ~~g~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~------------ 137 (270)
T PRK06179 70 RAGRIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFL------------ 137 (270)
T ss_pred hCCCCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccC------------
Confidence 69999999972 122345788999999999998885 567788999999976652
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCC
Q 010005 150 LTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGD 195 (520)
Q Consensus 150 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~ 195 (520)
+......|+.+|...|.+.+.++. .+|++++++||+.+.++..
T Consensus 138 ---~~~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~~ 183 (270)
T PRK06179 138 ---PAPYMALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNFD 183 (270)
T ss_pred ---CCCCccHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCcccccc
Confidence 112346899999999998877643 3699999999999988643
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.8e-18 Score=167.41 Aligned_cols=220 Identities=13% Similarity=0.071 Sum_probs=154.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
.++|+||||||+|+||++++++|+++| ++|+++++... .....+...+ ...++.++.+|+.|.+++.++++
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G-~~V~l~~r~~~------~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 116 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEG-ADIAIVYLDEH------EDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVE 116 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcc------hHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 346899999999999999999999999 58888544321 0000000111 12357789999999988877764
Q ss_pred -------CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCCCCCC
Q 010005 84 -------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 -------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|+|||+|+... ...++...+++|+.++.++++++... ...++|++||...|...
T Consensus 117 ~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~~------- 189 (290)
T PRK06701 117 ETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEGN------- 189 (290)
T ss_pred HHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCCC-------
Confidence 4799999998621 12345678999999999999999763 23589999999877321
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc-hHHHHHHhcCCCceEEecCCCccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL-VPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~-~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
.....|+.+|+..+.+++.++.+ .|++++++||+.++.+..... .+...... .......
T Consensus 190 --------~~~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~~~~~~~~~~~---------~~~~~~~ 252 (290)
T PRK06701 190 --------ETLIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPSDFDEEKVSQF---------GSNTPMQ 252 (290)
T ss_pred --------CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCcccccccCHHHHHHH---------HhcCCcC
Confidence 12357999999999998888764 489999999999998743211 11111111 1122345
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.+.+++|+|++++.++... .....|+.+++.++.
T Consensus 253 ~~~~~~dva~~~~~ll~~~---~~~~~G~~i~idgg~ 286 (290)
T PRK06701 253 RPGQPEELAPAYVFLASPD---SSYITGQMLHVNGGV 286 (290)
T ss_pred CCcCHHHHHHHHHHHcCcc---cCCccCcEEEeCCCc
Confidence 6788999999999887621 234678899998764
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.5e-17 Score=157.59 Aligned_cols=185 Identities=16% Similarity=0.063 Sum_probs=138.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++++|+||||+|+||++++++|+++|+.+|++ +.|+..+ ..+ ...++.++.+|+.|.+++.++++
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~--------~~r~~~~--~~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 71 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYA--------AARDPES--VTD--LGPRVVPLQLDVTDPASVAAAAEAA 71 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEE--------EecChhh--hhh--cCCceEEEEecCCCHHHHHHHHHhc
Confidence 356899999999999999999999999437888 4444331 111 23468899999999999888887
Q ss_pred -CCCEEEEcccC-C-------CCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCCCCCc
Q 010005 84 -GASTVFYVDAT-D-------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDETL 150 (520)
Q Consensus 84 -~~D~Vih~aa~-~-------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~ 150 (520)
.+|+|||+++. . ....++...+++|+.++.++++++. +.+.+++|++||...+.
T Consensus 72 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~------------- 138 (238)
T PRK08264 72 SDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWV------------- 138 (238)
T ss_pred CCCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcc-------------
Confidence 47999999987 2 1224556788999999999999875 35667899999987753
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccH
Q 010005 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (520)
Q Consensus 151 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v 227 (520)
+..+...|+.+|...|.+.+.++.+ .|++++++||+.+.++.... . . ...+..
T Consensus 139 --~~~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~~~~~------------~------~----~~~~~~ 194 (238)
T PRK08264 139 --NFPNLGTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTDMAAG------------L------D----APKASP 194 (238)
T ss_pred --CCCCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCccccccccc------------C------C----cCCCCH
Confidence 2234578999999999888876543 48999999999987653110 0 0 014567
Q ss_pred HHHHHHHHHHHH
Q 010005 228 ENVAHAHVCAAE 239 (520)
Q Consensus 228 ~Dva~ai~~~~~ 239 (520)
+|++++++..++
T Consensus 195 ~~~a~~~~~~~~ 206 (238)
T PRK08264 195 ADVARQILDALE 206 (238)
T ss_pred HHHHHHHHHHHh
Confidence 888888887776
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=164.37 Aligned_cols=224 Identities=13% Similarity=0.071 Sum_probs=152.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++|+++||||+|.||++++++|+++| ++|+++|+.... .. ....+.....++..+++|++|.+++.++++
T Consensus 16 l~~k~~lItGas~gIG~~la~~l~~~G-~~v~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 88 (280)
T PLN02253 16 LLGKVALVTGGATGIGESIVRLFHKHG-AKVCIVDLQDDL-----GQ-NVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFT 88 (280)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcC-CEEEEEeCCHHH-----HH-HHHHHhcCCCceEEEEeecCCHHHHHHHHHHH
Confidence 346899999999999999999999999 599986543210 00 000011112367899999999998888776
Q ss_pred -----CCCEEEEcccCCC---------CCcchhhHHhhhHHHHHHHHHHHHHC----CCCEEEEeecccccccCCCCCCC
Q 010005 84 -----GASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 -----~~D~Vih~aa~~~---------~~~~~~~~~~~Nv~gt~~ll~aa~~~----gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|+|||+||... ...+++.++++|+.++.++++++... +..++|++||.....
T Consensus 89 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~-------- 160 (280)
T PLN02253 89 VDKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAI-------- 160 (280)
T ss_pred HHHhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcc--------
Confidence 5899999998721 12446789999999999999988642 335788888865421
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch----------HHHHHHhcCCCce
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV----------PLLVNLAKPGWTK 212 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~----------~~l~~~~~~g~~~ 212 (520)
+......|+.+|+..|.+.+.++.+ +|+++.+++|+.+.++...... ..+......+.+
T Consensus 161 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 232 (280)
T PLN02253 161 -------GGLGPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLPEDERTEDALAGFRAFAGKNAN- 232 (280)
T ss_pred -------cCCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccccccccccchhhhhhhhHHHhhcCCC-
Confidence 1112357999999999999887654 5899999999999876421110 011111111110
Q ss_pred EEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC
Q 010005 213 FIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (520)
Q Consensus 213 ~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t 262 (520)
.....++++|+|+++..++.. ......|+.+++.++...+
T Consensus 233 -------l~~~~~~~~dva~~~~~l~s~---~~~~i~G~~i~vdgG~~~~ 272 (280)
T PLN02253 233 -------LKGVELTVDDVANAVLFLASD---EARYISGLNLMIDGGFTCT 272 (280)
T ss_pred -------CcCCCCCHHHHHHHHHhhcCc---ccccccCcEEEECCchhhc
Confidence 012347899999999988751 1234568889998765443
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-17 Score=161.30 Aligned_cols=200 Identities=17% Similarity=0.139 Sum_probs=142.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHHc-
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
+++||||||+|+||+++++.|+++| ++|+++++ +..+. ...+.+ ...++.++.+|+.|.+++.++++
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g-~~Vi~~~r--------~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 71 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAG-AQLVLAAR--------NETRLASLAQELADHGGEALVVPTDVSDAEACERLIEA 71 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCC-CEEEEEeC--------CHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 3689999999999999999999999 59999554 32210 000000 12357789999999998887775
Q ss_pred ------CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHHHH---CCCCEEEEeecccccccCCCCCCCC
Q 010005 84 ------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRE---CKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 ------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa~~---~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|+|||+|+... ....++..+++|+.++.++++++.. .+.+++|++||...++
T Consensus 72 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~--------- 142 (263)
T PRK06181 72 AVARFGGIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLT--------- 142 (263)
T ss_pred HHHHcCCCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccC---------
Confidence 5899999998721 1223466799999999999999853 2356899999988763
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhc---CCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~---~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
+..+.+.|+.+|...|.+.+.+. ..+++++++++|+.+..+....... ..+.+ ....+.+..+
T Consensus 143 ------~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~------~~~~~--~~~~~~~~~~ 208 (263)
T PRK06181 143 ------GVPTRSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIRKRALD------GDGKP--LGKSPMQESK 208 (263)
T ss_pred ------CCCCccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcchhhcc------ccccc--cccccccccC
Confidence 22345789999999998887654 3368999999999988764321100 11221 1112223347
Q ss_pred cccHHHHHHHHHHHHH
Q 010005 224 FTYVENVAHAHVCAAE 239 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~ 239 (520)
+++++|+|+++..+++
T Consensus 209 ~~~~~dva~~i~~~~~ 224 (263)
T PRK06181 209 IMSAEECAEAILPAIA 224 (263)
T ss_pred CCCHHHHHHHHHHHhh
Confidence 8999999999999987
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.6e-17 Score=159.04 Aligned_cols=219 Identities=14% Similarity=0.064 Sum_probs=151.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
++|++|||||+|+||+++++.|.++| ++|+++++. +... ......+ ...++..+.+|++|.+++.++++
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g-~~v~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 79 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHG-FDVAVHYNR-------SRDEAEALAAEIRALGRRAVALQADLADEAEVRALVA 79 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCC-------CHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 46799999999999999999999999 588774332 1110 0000000 12357789999999998887765
Q ss_pred -------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHC----CCCEEEEeecccccccCCCCCCC
Q 010005 84 -------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 -------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~----gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|+|||+||.. ....+++.++++|+.++.++++++... +-+++|++||...+.
T Consensus 80 ~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~-------- 151 (258)
T PRK09134 80 RASAALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWN-------- 151 (258)
T ss_pred HHHHHcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcC--------
Confidence 379999999862 122356778999999999999988764 235788888765441
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCCC--CceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
+......|+.+|...|.+.+.++.+. ++++++++|+.+..+... ....+... ..+.+ ...
T Consensus 152 -------~~p~~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~~~-~~~~~~~~-~~~~~---------~~~ 213 (258)
T PRK09134 152 -------LNPDFLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPSGRQ-SPEDFARQ-HAATP---------LGR 213 (258)
T ss_pred -------CCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCCccc-ChHHHHHH-HhcCC---------CCC
Confidence 11123579999999999988876532 489999999988764321 12222221 11111 112
Q ss_pred cccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHH
Q 010005 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFW 264 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~ 264 (520)
..+++|+|++++.+++ .+...|+.|++.++..++++
T Consensus 214 ~~~~~d~a~~~~~~~~-----~~~~~g~~~~i~gg~~~~~~ 249 (258)
T PRK09134 214 GSTPEEIAAAVRYLLD-----APSVTGQMIAVDGGQHLAWL 249 (258)
T ss_pred CcCHHHHHHHHHHHhc-----CCCcCCCEEEECCCeecccc
Confidence 3669999999999998 35677889999887655443
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-17 Score=160.80 Aligned_cols=218 Identities=14% Similarity=0.076 Sum_probs=149.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++++|+||||+|+||+++++.|+++| ++|+++|+... +.. .+.+.. ..++.++.+|++|.+++.++++
T Consensus 8 ~~~k~vlItG~sg~IG~~~a~~l~~~g-~~v~~~~~~~~----~~~---~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (255)
T PRK05717 8 HNGRVALVTGAARGIGLGIAAWLIAEG-WQVVLADLDRE----RGS---KVAKAL-GENAWFIAMDVADEAQVAAGVAEV 78 (255)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHcC-CEEEEEcCCHH----HHH---HHHHHc-CCceEEEEccCCCHHHHHHHHHHH
Confidence 346899999999999999999999999 59998654321 000 000111 2357789999999988765543
Q ss_pred -----CCCEEEEcccCCC---------CCcchhhHHhhhHHHHHHHHHHHHHC---CCCEEEEeecccccccCCCCCCCC
Q 010005 84 -----GASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 -----~~D~Vih~aa~~~---------~~~~~~~~~~~Nv~gt~~ll~aa~~~---gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
.+|+|||+||... ...+++..+++|+.++.++++++... ...++|++||...+..
T Consensus 79 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~-------- 150 (255)
T PRK05717 79 LGQFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQS-------- 150 (255)
T ss_pred HHHhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCC--------
Confidence 3799999999731 12345678999999999999999642 2358999998876421
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCCC--CceEEEEecCccccCCCCCc-hHHHHHHhcCCCceEEecCCCcccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQL-VPLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~vyGp~~~~~-~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
....+.|+.+|+..|.+++.++.+. ++++.+++|+.+.++..... ...+........ ....
T Consensus 151 -------~~~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~~~~~~~~~~~~~~~~~~---------~~~~ 214 (255)
T PRK05717 151 -------EPDTEAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARDPSQRRAEPLSEADHAQH---------PAGR 214 (255)
T ss_pred -------CCCCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCccccccchHHHHHHhhcC---------CCCC
Confidence 1224679999999999998876653 58999999999998753221 111111110000 1124
Q ss_pred cccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+.+++|++.++..++... .....|+.+.+.++.
T Consensus 215 ~~~~~~va~~~~~l~~~~---~~~~~g~~~~~~gg~ 247 (255)
T PRK05717 215 VGTVEDVAAMVAWLLSRQ---AGFVTGQEFVVDGGM 247 (255)
T ss_pred CcCHHHHHHHHHHHcCch---hcCccCcEEEECCCc
Confidence 668999999998777511 123567788886653
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=157.02 Aligned_cols=214 Identities=15% Similarity=0.090 Sum_probs=150.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
+.++|++|||||+|.||++++++|.++| ++|+++ .|+... ..++..+.+|+.|++++.++++
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G-~~Vi~~--------~r~~~~--------~~~~~~~~~D~~~~~~i~~~~~~ 65 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEG-SNVINF--------DIKEPS--------YNDVDYFKVDVSNKEQVIKGIDY 65 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCC-CeEEEE--------eCCccc--------cCceEEEEccCCCHHHHHHHHHH
Confidence 4567899999999999999999999999 599984 444321 1257889999999988877765
Q ss_pred ------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCCC
Q 010005 84 ------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 ------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|+|||+||.. ....+++..+++|+.++.++++++.. .+..++|++||...+.
T Consensus 66 ~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--------- 136 (258)
T PRK06398 66 VISKYGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFA--------- 136 (258)
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhcc---------
Confidence 589999999872 12234567789999999999888753 4567999999987652
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCCC--CceEEEEecCccccCCCCCch-------HH-HHHHhcCCCceEEec
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQLV-------PL-LVNLAKPGWTKFIIG 216 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~vyGp~~~~~~-------~~-l~~~~~~g~~~~i~g 216 (520)
+..+...|+.+|+..|.+.+.++.+. ++++.+++||.+-.+...... +. ..+... .++
T Consensus 137 ------~~~~~~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~------~~~ 204 (258)
T PRK06398 137 ------VTRNAAAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGSIRTPLLEWAAELEVGKDPEHVERKIR------EWG 204 (258)
T ss_pred ------CCCCCchhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHhhhhhccccCChhhhHHHHH------hhh
Confidence 22345789999999999988876542 489999999988655211100 00 000000 001
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.......+..++|+|++++.++.. ......|+.+.+.++.
T Consensus 205 ~~~~~~~~~~p~eva~~~~~l~s~---~~~~~~G~~i~~dgg~ 244 (258)
T PRK06398 205 EMHPMKRVGKPEEVAYVVAFLASD---LASFITGECVTVDGGL 244 (258)
T ss_pred hcCCcCCCcCHHHHHHHHHHHcCc---ccCCCCCcEEEECCcc
Confidence 111223466799999999987751 1234578888887754
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-17 Score=162.95 Aligned_cols=161 Identities=17% Similarity=0.149 Sum_probs=122.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
++++|+||||+|+||+++++.|.++| ++|+++ .|++.. +. .+...+++.+.+|++|.+++.++++
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G-~~Vi~~--------~r~~~~--~~-~l~~~~~~~~~~Dl~d~~~~~~~~~~~~ 70 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDG-WRVFAT--------CRKEED--VA-ALEAEGLEAFQLDYAEPESIAALVAQVL 70 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEE--------ECCHHH--HH-HHHHCCceEEEccCCCHHHHHHHHHHHH
Confidence 35789999999999999999999999 599984 444321 11 1112357889999999988776654
Q ss_pred -----CCCEEEEcccCCC-------CCcchhhHHhhhHHH----HHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQG----AKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~g----t~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|+|||+||... ...+.+..+++|+.| +.++++.+++.+.+++|++||...+.
T Consensus 71 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~~~---------- 140 (277)
T PRK05993 71 ELSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILGLV---------- 140 (277)
T ss_pred HHcCCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhhcC----------
Confidence 3799999998721 123446689999999 66777788888888999999975441
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhc---CCCCceEEEEecCccccCC
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPG 194 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~---~~~gi~~~ilRp~~vyGp~ 194 (520)
+..+...|+.||+..|.+.+.++ ..+|+++++++||.+-.+.
T Consensus 141 -----~~~~~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~~ 185 (277)
T PRK05993 141 -----PMKYRGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETRF 185 (277)
T ss_pred -----CCCccchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCch
Confidence 22346789999999999987764 3479999999999887653
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=163.05 Aligned_cols=219 Identities=18% Similarity=0.159 Sum_probs=152.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++++++|||||+|.||+++++.|+++| ++|+++ .|++....+.+.+ ...++.++.+|+.|.+++.+++
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G-~~v~~~--------~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 74 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEG-AIPVIF--------GRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAV 74 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcC-CcEEEE--------cCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHH
Confidence 4567899999999999999999999999 588884 4433211110110 1245788999999999888777
Q ss_pred c-------CCCEEEEcccCC------CCCcchhhHHhhhHHHHHHHHHHHHH---CCCCEEEEeecccccccCCCCCCCC
Q 010005 83 E-------GASTVFYVDATD------LNTDDFYNCYMIIVQGAKNVVTACRE---CKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~------~~~~~~~~~~~~Nv~gt~~ll~aa~~---~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
+ ++|+|||+||.. ....+++..+++|+.++.++.+++.. .+.+++|++||...+.
T Consensus 75 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~--------- 145 (258)
T PRK08628 75 EQTVAKFGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALT--------- 145 (258)
T ss_pred HHHHHhcCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhcc---------
Confidence 5 479999999961 11145667899999999999888754 2346899999987652
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHH------HHHHhcCCCceEEecC
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPL------LVNLAKPGWTKFIIGS 217 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~------l~~~~~~g~~~~i~g~ 217 (520)
+..+...|+.+|+..|.+++.++. ..|++++.+||+.+++|.....+.. ......... + .
T Consensus 146 ------~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~----~-~ 214 (258)
T PRK08628 146 ------GQGGTSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENWIATFDDPEAKLAAITAKI----P-L 214 (258)
T ss_pred ------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHHhhhccCHHHHHHHHHhcC----C-c
Confidence 123457899999999999988764 3689999999999998753211110 011111100 0 0
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
+ ..++.++|+|++++.++... .....|+.+.+.++
T Consensus 215 ~---~~~~~~~dva~~~~~l~~~~---~~~~~g~~~~~~gg 249 (258)
T PRK08628 215 G---HRMTTAEEIADTAVFLLSER---SSHTTGQWLFVDGG 249 (258)
T ss_pred c---ccCCCHHHHHHHHHHHhChh---hccccCceEEecCC
Confidence 1 24677899999999988621 23466788888664
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.3e-17 Score=158.98 Aligned_cols=217 Identities=14% Similarity=0.107 Sum_probs=147.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
+++++++||||+|+||+++++.|.++| +.|++.+ |+..+ ..+.... ..++..+.+|+.|.+++.++++
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~g-~~v~~~~--------~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~ 73 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQG-AIVGLHG--------TRVEKLEALAAEL-GERVKIFPANLSDRDEVKALGQK 73 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEc--------CCHHHHHHHHHHh-CCceEEEEccCCCHHHHHHHHHH
Confidence 457899999999999999999999999 5887743 33220 0000111 2357889999999988877653
Q ss_pred ------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCCC
Q 010005 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|+|||+|+... ...+++..+++|+.++.++++++.+ .+.+++|++||...+..
T Consensus 74 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~-------- 145 (245)
T PRK12936 74 AEADLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTG-------- 145 (245)
T ss_pred HHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcC--------
Confidence 5899999999721 2245677899999999999888753 45679999999755421
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
......|+.+|...+.+++.++.+ .|+++++++|+.+..+......+........ ......
T Consensus 146 -------~~~~~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~---------~~~~~~ 209 (245)
T PRK12936 146 -------NPGQANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGKLNDKQKEAIMG---------AIPMKR 209 (245)
T ss_pred -------CCCCcchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhcccChHHHHHHhc---------CCCCCC
Confidence 112357999999888777665432 5899999999988665332211111111111 112234
Q ss_pred cccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+...+|+++++..++.. ......|+.+++.++.
T Consensus 210 ~~~~~~ia~~~~~l~~~---~~~~~~G~~~~~~~g~ 242 (245)
T PRK12936 210 MGTGAEVASAVAYLASS---EAAYVTGQTIHVNGGM 242 (245)
T ss_pred CcCHHHHHHHHHHHcCc---cccCcCCCEEEECCCc
Confidence 56799999999877751 1124568899998764
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.3e-17 Score=159.70 Aligned_cols=217 Identities=14% Similarity=0.068 Sum_probs=152.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
++++++||||+|+||+++++.|.++| ++|+++|+.... +. ........ ...++..+.+|++|.+++.++++
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G-~~vi~~~r~~~~-~~--~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKG-AKLALIDLNQEK-LE--EAVAECGA--LGTEVRGYAANVTDEEDVEATFAQIA 77 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHH-HH--HHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 588885543210 00 00000000 12357789999999887776654
Q ss_pred ----CCCEEEEcccCCC----------------CCcchhhHHhhhHHHHHHHHHHHHH----C-CCCEEEEeeccccccc
Q 010005 84 ----GASTVFYVDATDL----------------NTDDFYNCYMIIVQGAKNVVTACRE----C-KVRRLVYNSTADVVFD 138 (520)
Q Consensus 84 ----~~D~Vih~aa~~~----------------~~~~~~~~~~~Nv~gt~~ll~aa~~----~-gvkr~V~~SS~~vyg~ 138 (520)
++|+|||+||... ...++..++++|+.++.++.+++.. . +-.++|++||...|+.
T Consensus 78 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~~ 157 (253)
T PRK08217 78 EDFGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAGN 157 (253)
T ss_pred HHcCCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccCC
Confidence 3799999998611 1134456788999999877765542 2 2247999999876631
Q ss_pred CCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEe
Q 010005 139 GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFII 215 (520)
Q Consensus 139 ~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~ 215 (520)
.+...|+.+|+..|.+++.++.+ +|+++++++|+.+.++......+..........+
T Consensus 158 ----------------~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~---- 217 (253)
T PRK08217 158 ----------------MGQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTAAMKPEALERLEKMIP---- 217 (253)
T ss_pred ----------------CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccCHHHHHHHHhcCC----
Confidence 23468999999999998887643 6899999999999988655444444443333222
Q ss_pred cCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 216 g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
...+.+++|+++++..++. .....|++++++++.
T Consensus 218 -----~~~~~~~~~~a~~~~~l~~-----~~~~~g~~~~~~gg~ 251 (253)
T PRK08217 218 -----VGRLGEPEEIAHTVRFIIE-----NDYVTGRVLEIDGGL 251 (253)
T ss_pred -----cCCCcCHHHHHHHHHHHHc-----CCCcCCcEEEeCCCc
Confidence 2346689999999999886 345688999998854
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=156.53 Aligned_cols=215 Identities=13% Similarity=0.019 Sum_probs=152.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++++++||||+|.||+++++.|.++| ++|++++ |+... .....++.++.+|+.|.+++.++++
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g-~~v~~~~--------r~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~~~ 69 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAG-ATVVVCG--------RRAPE-----TVDGRPAEFHAADVRDPDQVAALVDAI 69 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEe--------CChhh-----hhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 457899999999999999999999999 5999854 43321 0122467889999999988887775
Q ss_pred -----CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----C-CCCEEEEeecccccccCCCCCCCC
Q 010005 84 -----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----C-KVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 -----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~-gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|+|||+||.. ....+++..+++|+.++.++++++.. . +..++|++||...+.
T Consensus 70 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~--------- 140 (252)
T PRK07856 70 VERHGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRR--------- 140 (252)
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCC---------
Confidence 369999999861 12234567899999999999998864 2 346899999986642
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCCC--CceEEEEecCccccCCCCCch--HHHHHHhcCCCceEEecCCCccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~vyGp~~~~~~--~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
+......|+.+|+..|.+++.++.+. .+.+.+++|+.+..+...... +.......... ...
T Consensus 141 ------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~~ 205 (252)
T PRK07856 141 ------PSPGTAAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQSELHYGDAEGIAAVAATV---------PLG 205 (252)
T ss_pred ------CCCCCchhHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccccChHHhhhccCHHHHHHHhhcC---------CCC
Confidence 22335789999999999998876542 289999999998876422110 11111111111 123
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
.+...+|++++++.++.. ......|+.+.+.++...
T Consensus 206 ~~~~p~~va~~~~~L~~~---~~~~i~G~~i~vdgg~~~ 241 (252)
T PRK07856 206 RLATPADIAWACLFLASD---LASYVSGANLEVHGGGER 241 (252)
T ss_pred CCcCHHHHHHHHHHHcCc---ccCCccCCEEEECCCcch
Confidence 356789999999887751 123567888899876543
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8e-17 Score=156.43 Aligned_cols=219 Identities=13% Similarity=0.097 Sum_probs=152.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++++||||||+|+||+++++.|+++| ++|+++ +.|+..+. .+.+.+ ...++.++.+|++|.+++.+++
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g-~~v~~~-------~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 74 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEG-AKVVIA-------YDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLV 74 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEE-------cCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 356899999999999999999999999 588873 14432210 000000 1235788999999999888777
Q ss_pred c-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCC
Q 010005 83 E-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
+ ++|+|||+++.. .....++..+++|+.++.++++++.. .+.+++|++||...+..
T Consensus 75 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~------ 148 (247)
T PRK05565 75 EQIVEKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIG------ 148 (247)
T ss_pred HHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccC------
Confidence 5 689999999872 12234567899999998888887764 45678999999876521
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcc
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (520)
......|+.+|...+.+++.++.+ .|++++++||+.+..+..+...+........ ....
T Consensus 149 ---------~~~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~~~~~~~~~~~~---------~~~~ 210 (247)
T PRK05565 149 ---------ASCEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWSSFSEEDKEGLAE---------EIPL 210 (247)
T ss_pred ---------CCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCccccccChHHHHHHHh---------cCCC
Confidence 122457999999888877766443 5899999999999776544333322211111 0112
Q ss_pred cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..+...+|++++++.++... .....|+.+++.++.
T Consensus 211 ~~~~~~~~va~~~~~l~~~~---~~~~~g~~~~~~~~~ 245 (247)
T PRK05565 211 GRLGKPEEIAKVVLFLASDD---ASYITGQIITVDGGW 245 (247)
T ss_pred CCCCCHHHHHHHHHHHcCCc---cCCccCcEEEecCCc
Confidence 34667899999999888622 345678888887753
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-16 Score=159.00 Aligned_cols=219 Identities=13% Similarity=0.056 Sum_probs=151.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~-~~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
++++++||||+|.||+++++.|+++| ++|++.++.. ... ...+.+.. ...++..+.+|++|.+++.++++
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G-~~Vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 120 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREG-ADVAISYLPV------EEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVH 120 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEecCCc------chhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHH
Confidence 45799999999999999999999999 5888844321 111 00111111 12356789999999988776654
Q ss_pred -------CCCEEEEcccCC--------CCCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCCCCCC
Q 010005 84 -------GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 -------~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|++||+|+.. ....++...+++|+.++.++++++... .-.++|++||...+..
T Consensus 121 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~-------- 192 (294)
T PRK07985 121 EAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQP-------- 192 (294)
T ss_pred HHHHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccC--------
Confidence 479999999852 123456788999999999999998753 1258999999887631
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCC--chHHHHHHhcCCCceEEecCCCcc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKPGWTKFIIGSGENM 221 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~--~~~~l~~~~~~g~~~~i~g~g~~~ 221 (520)
......|+.+|+..+.+.+.++.+ +|+++.+++|+.+.+|.... ............. ..
T Consensus 193 -------~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~~~~~~~~~~~~~~~---------~~ 256 (294)
T PRK07985 193 -------SPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQT---------PM 256 (294)
T ss_pred -------CCCcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccccccCCCHHHHHHHhccC---------CC
Confidence 122457999999999998887654 68999999999999985311 1111111111111 12
Q ss_pred cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..+...+|+|.++..++.. ......|+.+.+.++.
T Consensus 257 ~r~~~pedva~~~~fL~s~---~~~~itG~~i~vdgG~ 291 (294)
T PRK07985 257 KRAGQPAELAPVYVYLASQ---ESSYVTAEVHGVCGGE 291 (294)
T ss_pred CCCCCHHHHHHHHHhhhCh---hcCCccccEEeeCCCe
Confidence 2356699999999988751 1234568888887764
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=156.80 Aligned_cols=218 Identities=16% Similarity=0.076 Sum_probs=148.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
..++|+++||||+|.||+++++.|.++| ++|++.+ +.... .. +.+...++.++.+|+.|++++.++++
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G-~~v~~~~--------~~~~~-~~-~~l~~~~~~~~~~Dl~~~~~~~~~~~~ 72 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREG-AKVAVLY--------NSAEN-EA-KELREKGVFTIKCDVGNRDQVKKSKEV 72 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEe--------CCcHH-HH-HHHHhCCCeEEEecCCCHHHHHHHHHH
Confidence 3456899999999999999999999999 5887743 22110 00 11111257889999999998887765
Q ss_pred ------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHH----HHHHHHCCCCEEEEeecccccccCCCCCCCC
Q 010005 84 ------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNV----VTACRECKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 ------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~l----l~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|+|||+||.. ....++...+++|+.++..+ ++.+++.+..++|++||...++.
T Consensus 73 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~-------- 144 (255)
T PRK06463 73 VEKEFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGT-------- 144 (255)
T ss_pred HHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCC--------
Confidence 579999999872 12234567899999996554 55555556679999999877631
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCC-----CchHHHHHHhcCCCceEEecCC
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT-----QLVPLLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~-----~~~~~l~~~~~~g~~~~i~g~g 218 (520)
+..+...|+.+|+..+.+.+.++.+ +|+++.+++|+.+-.+... .-.+.........
T Consensus 145 ------~~~~~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~--------- 209 (255)
T PRK06463 145 ------AAEGTTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKSQEEAEKLRELFRNK--------- 209 (255)
T ss_pred ------CCCCccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccCccchHHHHHHHHhC---------
Confidence 1123467999999999998887643 5899999999988654211 0011111111111
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.....+...+|++++++.++.. ......|+.+.+.++.
T Consensus 210 ~~~~~~~~~~~va~~~~~l~s~---~~~~~~G~~~~~dgg~ 247 (255)
T PRK06463 210 TVLKTTGKPEDIANIVLFLASD---DARYITGQVIVADGGR 247 (255)
T ss_pred CCcCCCcCHHHHHHHHHHHcCh---hhcCCCCCEEEECCCe
Confidence 1223456799999999988751 1234678888887764
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-17 Score=159.72 Aligned_cols=161 Identities=14% Similarity=0.143 Sum_probs=118.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCC--CCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDS--LSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~--~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
+++||||||+|+||+++++.|+++| ++|+++ .|++.. ..+.+. ....++..+.+|+.|.+++.++++
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G-~~v~~~--------~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 72 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKG-HNVIAG--------VQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEW 72 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEE--------eCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcC
Confidence 5789999999999999999999999 599884 443221 000000 012357889999999999998887
Q ss_pred CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHH----HHHCCCCEEEEeecccccccCCCCCCCCCCCccC
Q 010005 84 GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC 152 (520)
Q Consensus 84 ~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~a----a~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~ 152 (520)
++|+|||+|+... +..+....+++|+.++.++.++ +++.+.+++|++||...+.
T Consensus 73 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~~~~--------------- 137 (257)
T PRK09291 73 DVDVLLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLI--------------- 137 (257)
T ss_pred CCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChhhcc---------------
Confidence 7999999998721 1233456788899988766554 4566778999999975431
Q ss_pred CCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCcccc
Q 010005 153 CWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFG 192 (520)
Q Consensus 153 ~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyG 192 (520)
.......|+.+|...|.+.+.+.. ..|++++++||+.+..
T Consensus 138 ~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~t 180 (257)
T PRK09291 138 TGPFTGAYCASKHALEAIAEAMHAELKPFGIQVATVNPGPYLT 180 (257)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccc
Confidence 112346899999999998776643 3699999999987643
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.6e-17 Score=156.67 Aligned_cols=214 Identities=17% Similarity=0.123 Sum_probs=147.8
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEEecCCCHHHHHHHHcC----
Q 010005 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLEG---- 84 (520)
Q Consensus 11 ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~~---- 84 (520)
|||||++|+||+++++.|+++| ++|+++++... .....+.... ....+..+.+|++|.+++.+++++
T Consensus 1 vlItG~~g~iG~~la~~l~~~G-~~v~~~~r~~~------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 73 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEG-AKVIITYRSSE------EGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEE 73 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCch------hHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999999 58988543210 0000000001 112467899999999988877753
Q ss_pred ---CCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCCCCCCc
Q 010005 85 ---ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDETL 150 (520)
Q Consensus 85 ---~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~~~E~~ 150 (520)
+|+|||+++... ....++..+++|+.++.++++++.. .+.+++|++||.+.+..
T Consensus 74 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g------------ 141 (239)
T TIGR01830 74 LGPIDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMG------------ 141 (239)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCC------------
Confidence 699999999721 2245677899999999999999875 45679999999754321
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccH
Q 010005 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (520)
Q Consensus 151 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v 227 (520)
..+.+.|+.+|...|.+.+.++.+ .|++++++||+.+.++......+..........+ ..-+.++
T Consensus 142 ---~~~~~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 209 (239)
T TIGR01830 142 ---NAGQANYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMTDKLSEKVKKKILSQIP---------LGRFGTP 209 (239)
T ss_pred ---CCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhhhhcChHHHHHHHhcCC---------cCCCcCH
Confidence 123467999999999887776543 5899999999988776433322222222222211 1235679
Q ss_pred HHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 228 ~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
+|++++++.++.. ......|++||++++
T Consensus 210 ~~~a~~~~~~~~~---~~~~~~g~~~~~~~g 237 (239)
T TIGR01830 210 EEVANAVAFLASD---EASYITGQVIHVDGG 237 (239)
T ss_pred HHHHHHHHHHhCc---ccCCcCCCEEEeCCC
Confidence 9999999888751 123467889999764
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=156.20 Aligned_cols=216 Identities=20% Similarity=0.124 Sum_probs=150.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHcC--
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~-- 84 (520)
+++|+||||+|+||+++++.|+++| ++|++.+. |+... ..+.... ..++..+.+|+.|.+++.+++++
T Consensus 5 ~k~ilItGas~gIG~~la~~l~~~G-~~vv~~~~-------~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (253)
T PRK08642 5 EQTVLVTGGSRGLGAAIARAFAREG-ARVVVNYH-------QSEDAAEALADEL-GDRAIALQADVTDREQVQAMFATAT 75 (253)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCC-CeEEEEcC-------CCHHHHHHHHHHh-CCceEEEEcCCCCHHHHHHHHHHHH
Confidence 5799999999999999999999999 58776322 22110 0111111 13578899999999888877753
Q ss_pred ------CCEEEEcccCC-------------CCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCC
Q 010005 85 ------ASTVFYVDATD-------------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSH 141 (520)
Q Consensus 85 ------~D~Vih~aa~~-------------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~ 141 (520)
+|++||+|+.. .+..++...+++|+.++.++++++. +.+..++|++||.....
T Consensus 76 ~~~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~---- 151 (253)
T PRK08642 76 EHFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQN---- 151 (253)
T ss_pred HHhCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCccccC----
Confidence 89999999751 1123346679999999999999986 34557899999864320
Q ss_pred CCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCC-chHHHHHHhcCCCceEEecC
Q 010005 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-LVPLLVNLAKPGWTKFIIGS 217 (520)
Q Consensus 142 ~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~-~~~~l~~~~~~g~~~~i~g~ 217 (520)
+..|.+.|+.+|+..|.+++.++.+ .|+++..++||.+..+.... ..+..........
T Consensus 152 -----------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~~~~~~~~~~~~~~~------- 213 (253)
T PRK08642 152 -----------PVVPYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASAATPDEVFDLIAATT------- 213 (253)
T ss_pred -----------CCCCccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhccCCHHHHHHHHhcC-------
Confidence 2345678999999999999988654 58999999999887653211 1122222222111
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
....+.+.+|+++++..++... .....|+.+.+.++.
T Consensus 214 --~~~~~~~~~~va~~~~~l~~~~---~~~~~G~~~~vdgg~ 250 (253)
T PRK08642 214 --PLRKVTTPQEFADAVLFFASPW---ARAVTGQNLVVDGGL 250 (253)
T ss_pred --CcCCCCCHHHHHHHHHHHcCch---hcCccCCEEEeCCCe
Confidence 2235788999999999888621 246778888887753
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-16 Score=152.99 Aligned_cols=209 Identities=12% Similarity=0.061 Sum_probs=146.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC-CCCCcEEEEecCCCHHHHHHHHc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL-SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~-~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
+++++|+||||+|+||++++++|+++| ++|++++ |++.+. .+.+.+ ...++..+.+|+.|.+++.++++
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g-~~V~~~~--------r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~ 74 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEG-YKVAITA--------RDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVD 74 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEee--------CCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHH
Confidence 346899999999999999999999999 5899954 433210 010111 11467889999999988877775
Q ss_pred -------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHC---CCCEEEEeecccccccCCCCCCCC
Q 010005 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~---gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|+|||+++... ...++...+++|+.++.++++++.+. +.+++|++||...+.
T Consensus 75 ~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~--------- 145 (237)
T PRK07326 75 AIVAAFGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTN--------- 145 (237)
T ss_pred HHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhcc---------
Confidence 6899999998721 22345678999999999999888653 456899999976542
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhc---CCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~---~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
+..+...|+.+|+..+.+.+.+. ...|++++++||+.+.++..... + .. ....
T Consensus 146 ------~~~~~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~~------------~----~~--~~~~ 201 (237)
T PRK07326 146 ------FFAGGAAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGHT------------P----SE--KDAW 201 (237)
T ss_pred ------CCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCcccccc------------c----ch--hhhc
Confidence 12345679999999888877764 34699999999999876532110 0 00 0011
Q ss_pred cccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
.+..+|+++++..++.. ++........+.++++
T Consensus 202 ~~~~~d~a~~~~~~l~~----~~~~~~~~~~~~~~~~ 234 (237)
T PRK07326 202 KIQPEDIAQLVLDLLKM----PPRTLPSKIEVRPSRP 234 (237)
T ss_pred cCCHHHHHHHHHHHHhC----CccccccceEEecCCC
Confidence 36789999999999873 2344455666665544
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=154.97 Aligned_cols=216 Identities=13% Similarity=0.067 Sum_probs=150.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
.++++|+||||+|.||++++++|+++| ++|++++ |+... ...+.. ...++..+.+|++|.+++.++++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G-~~vi~~~--------r~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAG-ADIVGAG--------RSEPS-ETQQQVEALGRRFLSLTADLSDIEAIKALVD 72 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEc--------CchHH-HHHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence 357899999999999999999999999 5999854 33210 000000 12357889999999988876664
Q ss_pred -------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHH----CC-CCEEEEeecccccccCCCCCC
Q 010005 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~----~g-vkr~V~~SS~~vyg~~~~~~~ 144 (520)
++|++||+|+... ...+++..+++|+.++.++++++.. .+ ..++|++||...|+..
T Consensus 73 ~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~----- 147 (248)
T TIGR01832 73 SAVEEFGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGG----- 147 (248)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCC-----
Confidence 4899999998721 1235667789999999999998864 33 4689999998876321
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch--HHHHHHhcCCCceEEecCCC
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGE 219 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~--~~l~~~~~~g~~~~i~g~g~ 219 (520)
.....|+.+|+..+.+.+.++.+ +|+++++++||.+..+...... +......... .
T Consensus 148 ----------~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~---------~ 208 (248)
T TIGR01832 148 ----------IRVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALRADEDRNAAILER---------I 208 (248)
T ss_pred ----------CCCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhccccChHHHHHHHhc---------C
Confidence 12357999999999998888655 5899999999999877432111 0000111110 1
Q ss_pred cccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
....|+..+|+|+++..++... .....|+.+.+.++
T Consensus 209 ~~~~~~~~~dva~~~~~l~s~~---~~~~~G~~i~~dgg 244 (248)
T TIGR01832 209 PAGRWGTPDDIGGPAVFLASSA---SDYVNGYTLAVDGG 244 (248)
T ss_pred CCCCCcCHHHHHHHHHHHcCcc---ccCcCCcEEEeCCC
Confidence 1246788999999999887611 23455777666554
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-17 Score=158.40 Aligned_cols=216 Identities=16% Similarity=0.086 Sum_probs=144.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHHcC-
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLEG- 84 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~~- 84 (520)
++++||||+|+||++++++|+++| ++|++. ..|+..+. .....+ ...++..+.+|+.|++++.+++++
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g-~~v~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~ 73 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEG-YTVAVN-------YQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAI 73 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEE-------eCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHH
Confidence 689999999999999999999999 488763 12322110 000000 123577899999999988887763
Q ss_pred ------CCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHHHHCC-------CCEEEEeecccccccCCCCC
Q 010005 85 ------ASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRECK-------VRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 85 ------~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa~~~g-------vkr~V~~SS~~vyg~~~~~~ 143 (520)
+|+|||+++... ...+++..+++|+.++.++++++...- .++||++||...+...
T Consensus 74 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~---- 149 (247)
T PRK09730 74 DQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGA---- 149 (247)
T ss_pred HHhCCCCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCC----
Confidence 689999998621 112345789999999988887765431 2469999998664211
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCC-CchHHHHHHhcCCCceEEecCCC
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT-QLVPLLVNLAKPGWTKFIIGSGE 219 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~-~~~~~l~~~~~~g~~~~i~g~g~ 219 (520)
+ .....|+.+|+..|.+++.++.+ .|++++++||+.+|||... ...+..........+.
T Consensus 150 ---------~-~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~------- 212 (247)
T PRK09730 150 ---------P-GEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGEPGRVDRVKSNIPM------- 212 (247)
T ss_pred ---------C-CcccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccCCCHHHHHHHHhcCCC-------
Confidence 0 11246999999999888776543 5899999999999998643 2222222223222221
Q ss_pred cccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
.-..+++|+++++..++... .....|+.+.+.++
T Consensus 213 --~~~~~~~dva~~~~~~~~~~---~~~~~g~~~~~~g~ 246 (247)
T PRK09730 213 --QRGGQPEEVAQAIVWLLSDK---ASYVTGSFIDLAGG 246 (247)
T ss_pred --CCCcCHHHHHHHHHhhcChh---hcCccCcEEecCCC
Confidence 11236899999999877521 12366777877664
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.7e-17 Score=157.63 Aligned_cols=197 Identities=13% Similarity=0.041 Sum_probs=137.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc----
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~---- 83 (520)
+++|+||||+|+||+++++.|.++| ++|+++ .|+..+ +.. ....+++.+.+|+.|.+++.++++
T Consensus 2 ~k~vlVtGasg~IG~~la~~l~~~g-~~v~~~--------~r~~~~--~~~-~~~~~~~~~~~D~~~~~~~~~~~~~i~~ 69 (256)
T PRK08017 2 QKSVLITGCSSGIGLEAALELKRRG-YRVLAA--------CRKPDD--VAR-MNSLGFTGILLDLDDPESVERAADEVIA 69 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEE--------eCCHHH--hHH-HHhCCCeEEEeecCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999 588884 444321 111 112357889999999887765543
Q ss_pred ----CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHH----HHHHHHCCCCEEEEeecccccccCCCCCCCCCC
Q 010005 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNV----VTACRECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~l----l~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
++|.+||+||... ...+++..++.|+.|+.++ ++++++.+.+++|++||...+.
T Consensus 70 ~~~~~~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~----------- 138 (256)
T PRK08017 70 LTDNRLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVMGLI----------- 138 (256)
T ss_pred hcCCCCeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCEEEEEcCccccc-----------
Confidence 3689999998621 2234567899999998775 6777778888999999974431
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHh---cCCCCceEEEEecCccccCCCCCchHHHHHHhcCCC-ceEEecCCCccccc
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFA---NNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGW-TKFIIGSGENMSDF 224 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~---~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~-~~~i~g~g~~~~~~ 224 (520)
+....+.|+.+|...|.+.+.+ ....+++++++||+.+..+.. .....+. ......++...+.+
T Consensus 139 ----~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~--------~~~~~~~~~~~~~~~~~~~~~~ 206 (256)
T PRK08017 139 ----STPGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFT--------DNVNQTQSDKPVENPGIAARFT 206 (256)
T ss_pred ----CCCCccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccchh--------hcccchhhccchhhhHHHhhcC
Confidence 1234568999999999876643 344689999999987754321 1111111 11122233344678
Q ss_pred ccHHHHHHHHHHHHH
Q 010005 225 TYVENVAHAHVCAAE 239 (520)
Q Consensus 225 i~v~Dva~ai~~~~~ 239 (520)
++++|+++++..+++
T Consensus 207 ~~~~d~a~~~~~~~~ 221 (256)
T PRK08017 207 LGPEAVVPKLRHALE 221 (256)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999987
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-16 Score=155.80 Aligned_cols=220 Identities=14% Similarity=0.063 Sum_probs=151.2
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHH
Q 010005 3 FDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIK 79 (520)
Q Consensus 3 ~~~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~ 79 (520)
....+++++|||||+|+||.+++++|+++| ++|++++ |+..+ ..+.+.+ ...++.++.+|++|.+++.
T Consensus 5 ~~~~~~~~vlItGasggIG~~~a~~l~~~G-~~Vi~~~--------r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~ 75 (263)
T PRK07814 5 RFRLDDQVAVVTGAGRGLGAAIALAFAEAG-ADVLIAA--------RTESQLDEVAEQIRAAGRRAHVVAADLAHPEATA 75 (263)
T ss_pred cccCCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEe--------CCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHH
Confidence 344567899999999999999999999999 5999954 43221 0000101 1235788999999999887
Q ss_pred HHHc-------CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHHH-----CCCCEEEEeecccccccCC
Q 010005 80 KVLE-------GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACRE-----CKVRRLVYNSTADVVFDGS 140 (520)
Q Consensus 80 ~~l~-------~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~~-----~gvkr~V~~SS~~vyg~~~ 140 (520)
++++ ++|+|||+|+. .....+++..+++|+.++.++.+++.. .+.+++|++||.....
T Consensus 76 ~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~--- 152 (263)
T PRK07814 76 GLAGQAVEAFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRL--- 152 (263)
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccC---
Confidence 7665 58999999985 122345678899999999999999974 4557899999964421
Q ss_pred CCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC--CCceEEEEecCccccCCCCCc--hHHHHHHhcCCCceEEec
Q 010005 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI--DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIG 216 (520)
Q Consensus 141 ~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~--~gi~~~ilRp~~vyGp~~~~~--~~~l~~~~~~g~~~~i~g 216 (520)
+..+.+.|+.+|+..|.+++.++.+ .++++++++|+.+..+..... -..+........
T Consensus 153 ------------~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~------ 214 (263)
T PRK07814 153 ------------AGRGFAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSALEVVAANDELRAPMEKAT------ 214 (263)
T ss_pred ------------CCCCCchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCchhhhccCCHHHHHHHHhcC------
Confidence 2234578999999999998877653 258899999998875532110 011111111111
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
....+..++|+|++++.++... .....|+.+.+.++
T Consensus 215 ---~~~~~~~~~~va~~~~~l~~~~---~~~~~g~~~~~~~~ 250 (263)
T PRK07814 215 ---PLRRLGDPEDIAAAAVYLASPA---GSYLTGKTLEVDGG 250 (263)
T ss_pred ---CCCCCcCHHHHHHHHHHHcCcc---ccCcCCCEEEECCC
Confidence 1223457899999999887511 13456777777664
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=156.63 Aligned_cols=190 Identities=14% Similarity=0.117 Sum_probs=137.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCC-CCCcEEEEecCCCHHHHHHHHcC--
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS-SGRAEYHQVDVRDISQIKKVLEG-- 84 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~-~~~v~~~~~Dl~d~~~l~~~l~~-- 84 (520)
+|+|+||||+|.||+++++.|.++| ++|+++|+.... + ..+.+.+. ..++.++.+|++|.+++.++++.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G-~~v~~~~r~~~~-~------~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~ 73 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQG-ATLGLVARRTDA-L------QAFAARLPKAARVSVYAADVRDADALAAAAADFI 73 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCC-CEEEEEeCCHHH-H------HHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHH
Confidence 5799999999999999999999999 599996543210 0 00111111 11678899999999988777653
Q ss_pred -----CCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHH----HHHHCCCCEEEEeecccccccCCCCCCCCC
Q 010005 85 -----ASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVT----ACRECKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 85 -----~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~----aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
+|++||+||... ...+++..+++|+.|+.++++ ++++.+.+++|++||...+.
T Consensus 74 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~~---------- 143 (257)
T PRK07024 74 AAHGLPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGVR---------- 143 (257)
T ss_pred HhCCCCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhcC----------
Confidence 799999998721 123467789999999999776 55666777999999976541
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhc---CCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~---~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (520)
+......|+.+|+..|.+.+.++ +.+|++++++||+.+.++.... ... ....+
T Consensus 144 -----~~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~----------~~~---------~~~~~ 199 (257)
T PRK07024 144 -----GLPGAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPMTAH----------NPY---------PMPFL 199 (257)
T ss_pred -----CCCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCchhhc----------CCC---------CCCCc
Confidence 11234679999999999987764 4479999999999998774211 000 00113
Q ss_pred ccHHHHHHHHHHHHH
Q 010005 225 TYVENVAHAHVCAAE 239 (520)
Q Consensus 225 i~v~Dva~ai~~~~~ 239 (520)
+..+|+++.++.+++
T Consensus 200 ~~~~~~a~~~~~~l~ 214 (257)
T PRK07024 200 MDADRFAARAARAIA 214 (257)
T ss_pred cCHHHHHHHHHHHHh
Confidence 569999999998887
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-16 Score=153.57 Aligned_cols=218 Identities=14% Similarity=0.059 Sum_probs=147.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC--CCCCCC-CCCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN--SLLPDS-LSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~--~~l~~~-~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
+++.++||||+|+||++++++|.++|+ +|++.. .|.... ..+.+. .....+..+.+|+.|.+++.++++
T Consensus 2 ~~k~~lVtG~s~giG~~~a~~l~~~G~-~vv~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 73 (246)
T PRK12938 2 SQRIAYVTGGMGGIGTSICQRLHKDGF-KVVAGC-------GPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFD 73 (246)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEc-------CCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 458899999999999999999999994 777632 111110 000000 012346678999999988877664
Q ss_pred -------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCC
Q 010005 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|+|||+|+... ...+++.++++|+.++.++.+++ ++.+.+++|++||.....
T Consensus 74 ~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~-------- 145 (246)
T PRK12938 74 KVKAEVGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQK-------- 145 (246)
T ss_pred HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhccC--------
Confidence 5899999998721 23456778999999977755554 556678999999975421
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
+..+...|+.+|...|.+.+.++.+ .|+++.+++|+.+.+|......+..........+ ..
T Consensus 146 -------~~~~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~---------~~ 209 (246)
T PRK12938 146 -------GQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAIRPDVLEKIVATIP---------VR 209 (246)
T ss_pred -------CCCCChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchhhhcChHHHHHHHhcCC---------cc
Confidence 1234568999999888887766533 6899999999999887544333333333322221 22
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.+...+|+++++..++.- ......|+.+.+.++.
T Consensus 210 ~~~~~~~v~~~~~~l~~~---~~~~~~g~~~~~~~g~ 243 (246)
T PRK12938 210 RLGSPDEIGSIVAWLASE---ESGFSTGADFSLNGGL 243 (246)
T ss_pred CCcCHHHHHHHHHHHcCc---ccCCccCcEEEECCcc
Confidence 345689999999887751 1234677888887653
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-16 Score=155.84 Aligned_cols=217 Identities=14% Similarity=0.121 Sum_probs=149.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHHc-
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
+++|+||||+|.||++++++|+++| ++|++++. |+... ....+.+ ...++..+.+|+.|.+++.++++
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G-~~V~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQG-FDIGITWH-------SDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDK 73 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeC-------CChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 5799999999999999999999999 58877432 11110 0000000 12357889999999988777665
Q ss_pred ------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHCC-----CCEEEEeecccccccCCCCCCC
Q 010005 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECK-----VRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~g-----vkr~V~~SS~~vyg~~~~~~~~ 145 (520)
.+|+|||+|+... ...++...+++|+.++.++++++...- -+++|++||....
T Consensus 74 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~--------- 144 (256)
T PRK12743 74 LIQRLGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEH--------- 144 (256)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeecccc---------
Confidence 4799999998721 224567789999999999999886532 2589999997532
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
. +..+...|+.+|+..+.+++.++. .+|++++.++|+.+.++......+........+.+ ..
T Consensus 145 ----~--~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~---------~~ 209 (256)
T PRK12743 145 ----T--PLPGASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMNGMDDSDVKPDSRPGIP---------LG 209 (256)
T ss_pred ----C--CCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCccccccChHHHHHHHhcCC---------CC
Confidence 1 334567999999999999877764 35899999999999987543211211111111111 11
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.+.+.+|++.++..++.. ......|+.+.+.++.
T Consensus 210 ~~~~~~dva~~~~~l~~~---~~~~~~G~~~~~dgg~ 243 (256)
T PRK12743 210 RPGDTHEIASLVAWLCSE---GASYTTGQSLIVDGGF 243 (256)
T ss_pred CCCCHHHHHHHHHHHhCc---cccCcCCcEEEECCCc
Confidence 245789999999887751 1234678888888764
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-16 Score=153.12 Aligned_cols=197 Identities=14% Similarity=0.102 Sum_probs=140.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++++++||||+|+||.+++++|+++|+ +|+++++.... .. .....+.. ...++.++.+|+.|.+++.++++
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~-~~--~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTEEN-LK--AVAEEVEA--YGVKVVIATADVSDYEEVTAAIEQL 78 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHH-HH--HHHHHHHH--hCCeEEEEECCCCCHHHHHHHHHHH
Confidence 4568999999999999999999999994 99995443210 00 00001110 12357889999999998888776
Q ss_pred -----CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|+|||+++... ...+++..+++|+.++.++++++. +.+.+++|++||...+.
T Consensus 79 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~---------- 148 (239)
T PRK07666 79 KNELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQK---------- 148 (239)
T ss_pred HHHcCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhcc----------
Confidence 6899999998721 223456789999999999988886 34567899999987652
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (520)
+..+...|+.+|...+.+++.++. +.|++++++||+.+.++..... ... .+ ....+
T Consensus 149 -----~~~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~~~~-------~~~--------~~-~~~~~ 207 (239)
T PRK07666 149 -----GAAVTSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDMAVDL-------GLT--------DG-NPDKV 207 (239)
T ss_pred -----CCCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcchhhc-------ccc--------cc-CCCCC
Confidence 123456799999999988877653 3689999999999987642110 000 01 11245
Q ss_pred ccHHHHHHHHHHHHH
Q 010005 225 TYVENVAHAHVCAAE 239 (520)
Q Consensus 225 i~v~Dva~ai~~~~~ 239 (520)
+..+|+|+++..+++
T Consensus 208 ~~~~~~a~~~~~~l~ 222 (239)
T PRK07666 208 MQPEDLAEFIVAQLK 222 (239)
T ss_pred CCHHHHHHHHHHHHh
Confidence 779999999999887
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.4e-16 Score=151.18 Aligned_cols=216 Identities=18% Similarity=0.128 Sum_probs=149.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC--CCCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN--SLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~--~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
++++|+||||+|+||+++++.|.++| ++|++.. |+... ..+.+.+ ...++.++.+|+.|.+++.+++
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g-~~v~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 74 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADG-FAVAVNY--------AGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLF 74 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEec--------CCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 45899999999999999999999999 5777632 22110 0000000 1245788999999999888887
Q ss_pred c-------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCCCCCC
Q 010005 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
+ ++|+|||+||... ...+++..+++|+.++.++++++.+. ...++|++||...+.
T Consensus 75 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~--------- 145 (245)
T PRK12937 75 DAAETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIAL--------- 145 (245)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccC---------
Confidence 6 5899999999721 22345678899999999999988764 235899999876531
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCC-CCchHHHHHHhcCCCceEEecCCCccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGD-TQLVPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~-~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
+..+.+.|+.+|...|.+++.++.+ .|+.+++++|+.+-.+.. ....+.......... ...
T Consensus 146 ------~~~~~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~---------~~~ 210 (245)
T PRK12937 146 ------PLPGYGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFFNGKSAEQIDQLAGLA---------PLE 210 (245)
T ss_pred ------CCCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhcccCCHHHHHHHHhcC---------CCC
Confidence 2234578999999999998877543 589999999998776532 111122222222221 122
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
.+.+++|+++++..++... .....|+.++++++
T Consensus 211 ~~~~~~d~a~~~~~l~~~~---~~~~~g~~~~~~~g 243 (245)
T PRK12937 211 RLGTPEEIAAAVAFLAGPD---GAWVNGQVLRVNGG 243 (245)
T ss_pred CCCCHHHHHHHHHHHcCcc---ccCccccEEEeCCC
Confidence 3456899999998887521 23456888888764
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-16 Score=155.09 Aligned_cols=197 Identities=16% Similarity=0.091 Sum_probs=136.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHc----
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~---- 83 (520)
|+|+||||+|+||.++++.|+++| ++|++++ |++.+. .+.... ..++..+.+|+.|.+++.++++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G-~~V~~~~--------r~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~i~~~~~~~~~ 70 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG-HKVIATG--------RRQERLQELKDEL-GDNLYIAQLDVRNRAAIEEMLASLPA 70 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-CEEEEEE--------CCHHHHHHHHHHh-ccceEEEEecCCCHHHHHHHHHHHHH
Confidence 689999999999999999999999 5999954 432210 010111 2357889999999988877664
Q ss_pred ---CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHH----HHHCCCCEEEEeecccccccCCCCCCCCCC
Q 010005 84 ---GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 ---~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~a----a~~~gvkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
++|+|||+||... ...+++..+++|+.++.++.++ +++.+.+++|++||...+.
T Consensus 71 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~----------- 139 (248)
T PRK10538 71 EWRNIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSW----------- 139 (248)
T ss_pred HcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccCC-----------
Confidence 6899999998621 2234567899999996665555 4566778999999976531
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCc-hHHHHHHhcCCCceEEecCCCccccc
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL-VPLLVNLAKPGWTKFIIGSGENMSDF 224 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~-~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (520)
+..+.+.|+.+|...|.+.+.++. ..|+.+++++||.+.|+..... +..-.... .. .+ + ...+
T Consensus 140 ----~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~~~~~~~~~~~~~~--~~---~~-~---~~~~ 206 (248)
T PRK10538 140 ----PYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKA--EK---TY-Q---NTVA 206 (248)
T ss_pred ----CCCCCchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccccchhhccCcHHHH--Hh---hc-c---ccCC
Confidence 223456899999999999877753 3589999999999987642110 00000000 00 00 1 1134
Q ss_pred ccHHHHHHHHHHHHH
Q 010005 225 TYVENVAHAHVCAAE 239 (520)
Q Consensus 225 i~v~Dva~ai~~~~~ 239 (520)
+..+|+|++++.++.
T Consensus 207 ~~~~dvA~~~~~l~~ 221 (248)
T PRK10538 207 LTPEDVSEAVWWVAT 221 (248)
T ss_pred CCHHHHHHHHHHHhc
Confidence 679999999998876
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-16 Score=155.51 Aligned_cols=223 Identities=13% Similarity=0.076 Sum_probs=153.4
Q ss_pred CCCCCCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEEecCCCHHHH
Q 010005 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQI 78 (520)
Q Consensus 1 m~~~~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~~Dl~d~~~l 78 (520)
|+....++++||||||+|.||.+++++|+++| ++|+++++ +.....+.+.. ...++.++.+|+.|.+++
T Consensus 8 ~~~~~l~~k~vlItGas~gIG~~ia~~l~~~G-~~v~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i 78 (258)
T PRK06935 8 MDFFSLDGKVAIVTGGNTGLGQGYAVALAKAG-ADIIITTH--------GTNWDETRRLIEKEGRKVTFVQVDLTKPESA 78 (258)
T ss_pred cccccCCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeC--------CcHHHHHHHHHHhcCCceEEEEcCCCCHHHH
Confidence 33344567899999999999999999999999 58888543 21100111111 123578899999999988
Q ss_pred HHHHc-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCC
Q 010005 79 KKVLE-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGS 140 (520)
Q Consensus 79 ~~~l~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~ 140 (520)
.++++ ++|++||+|+.. ....+++..+++|+.++.++.+++. +.+.+++|++||...+..
T Consensus 79 ~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-- 156 (258)
T PRK06935 79 EKVVKEALEEFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQG-- 156 (258)
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhccC--
Confidence 87776 579999999872 1233566788999999888776664 445679999999877621
Q ss_pred CCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch--HHHHHHhcCCCceEEe
Q 010005 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFII 215 (520)
Q Consensus 141 ~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~--~~l~~~~~~g~~~~i~ 215 (520)
......|+.+|+..|.+.+.++.+ +|+++++++||.+..+...... +.........
T Consensus 157 -------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~------ 217 (258)
T PRK06935 157 -------------GKFVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPIRADKNRNDEILKR------ 217 (258)
T ss_pred -------------CCCchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhcccChHHHHHHHhc------
Confidence 123458999999999998887654 5899999999998876432111 1111111111
Q ss_pred cCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 216 g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.....+...+|++.++..++.. ......|+++.+.++.
T Consensus 218 ---~~~~~~~~~~dva~~~~~l~s~---~~~~~~G~~i~~dgg~ 255 (258)
T PRK06935 218 ---IPAGRWGEPDDLMGAAVFLASR---ASDYVNGHILAVDGGW 255 (258)
T ss_pred ---CCCCCCCCHHHHHHHHHHHcCh---hhcCCCCCEEEECCCe
Confidence 1123466789999999877751 1245678888887653
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-16 Score=152.85 Aligned_cols=194 Identities=13% Similarity=0.094 Sum_probs=139.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
++++++||||+|.||++++++|+++| ++|+++++ ++.+. .+.+.. ...++.++.+|++|.+++.++++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G-~~V~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 75 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAG-WDLALVAR--------SQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIA 75 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeC--------CHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHH
Confidence 56899999999999999999999999 59999544 32210 000000 12467889999999998877765
Q ss_pred -------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCC
Q 010005 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|+|||+|+... ...+.+..+++|+.++.++++++ ++.+.+++|++||...++
T Consensus 76 ~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~-------- 147 (241)
T PRK07454 76 ELLEQFGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARN-------- 147 (241)
T ss_pred HHHHHcCCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCc--------
Confidence 4899999998721 22356778899999998877776 445567999999998763
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhc---CCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~---~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
+..+...|+.+|...+.+.+.++ ...|++++++||+.+-.+.... ...... ....
T Consensus 148 -------~~~~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~~~-----------~~~~~~----~~~~ 205 (241)
T PRK07454 148 -------AFPQWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPLWDT-----------ETVQAD----FDRS 205 (241)
T ss_pred -------CCCCccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCcccc-----------cccccc----cccc
Confidence 12345689999999999887764 3358999999999987664211 000000 0112
Q ss_pred ccccHHHHHHHHHHHHH
Q 010005 223 DFTYVENVAHAHVCAAE 239 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~ 239 (520)
.++..+|+|++++.++.
T Consensus 206 ~~~~~~~va~~~~~l~~ 222 (241)
T PRK07454 206 AMLSPEQVAQTILHLAQ 222 (241)
T ss_pred cCCCHHHHHHHHHHHHc
Confidence 35779999999999887
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=161.28 Aligned_cols=179 Identities=13% Similarity=0.039 Sum_probs=125.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++++|+||||+|+||.++++.|+++| ++|+++++ +..+. ...+.+ ...++.++.+|++|.+++.+++
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G-~~V~~~~r--------~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~ 74 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRG-WHVIMACR--------NLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFV 74 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEEC--------CHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHH
Confidence 357899999999999999999999999 58998543 32210 000001 1235788999999999888777
Q ss_pred c-------CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHHHH----CC--CCEEEEeecccccccCCC
Q 010005 83 E-------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRE----CK--VRRLVYNSTADVVFDGSH 141 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa~~----~g--vkr~V~~SS~~vyg~~~~ 141 (520)
+ ++|+|||+||... ...+++.++++|+.|+.++.+++.. .+ ..|+|++||...++....
T Consensus 75 ~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~ 154 (322)
T PRK07453 75 DDFRALGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELG 154 (322)
T ss_pred HHHHHhCCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccC
Confidence 5 3899999999621 2235678899999999999888764 22 359999999877542111
Q ss_pred CCC--C--CCCC----------------ccCCCCCCChHHHHHHHHHHHHHHhcCC----CCceEEEEecCccccC
Q 010005 142 DIH--N--GDET----------------LTCCWKFQDLMCDLKAQAEALVLFANNI----DGLLTCALRPSNVFGP 193 (520)
Q Consensus 142 ~~~--~--~~E~----------------~~~~~~p~~~Y~~sK~~~E~~~~~~~~~----~gi~~~ilRp~~vyGp 193 (520)
... + .+.+ ...+..|...|+.||...+.+.+.++++ .|+.++++|||.|++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t 230 (322)
T PRK07453 155 GKIPIPAPADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADT 230 (322)
T ss_pred CccCCCCccchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCC
Confidence 000 0 0100 0013456789999999887776666543 4899999999999864
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-16 Score=153.57 Aligned_cols=218 Identities=11% Similarity=0.065 Sum_probs=152.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
..++++|||||+|.||++++++|+++| ++|++.|+ +..+ ....+.+ ...++..+.+|++|.+++.+++
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G-~~vvl~~r--------~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~ 77 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYG-AEIIINDI--------TAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAI 77 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcC-CEEEEEcC--------CHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHH
Confidence 346899999999999999999999999 59988544 3220 0000111 1235677899999999888776
Q ss_pred c-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCC
Q 010005 83 E-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
+ ++|+|||+|+.. ....+++..+++|+.++.++.+++.. .+..++|++||.....
T Consensus 78 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~------- 150 (254)
T PRK08085 78 EHIEKDIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSEL------- 150 (254)
T ss_pred HHHHHhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhcc-------
Confidence 4 479999999862 22345667899999999888888764 3457899999975421
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch--HHHHHHhcCCCceEEecCCC
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGE 219 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~--~~l~~~~~~g~~~~i~g~g~ 219 (520)
+..+...|+.+|+..|.+++.++.+ +|+++.+++||.+.++...... +.+....... .
T Consensus 151 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~---------~ 213 (254)
T PRK08085 151 --------GRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKR---------T 213 (254)
T ss_pred --------CCCCCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhccCHHHHHHHHhc---------C
Confidence 2234568999999999999888654 5899999999999887543211 2222222221 1
Q ss_pred cccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
....+...+|++.++..++.. ......|+...+.++.
T Consensus 214 p~~~~~~~~~va~~~~~l~~~---~~~~i~G~~i~~dgg~ 250 (254)
T PRK08085 214 PAARWGDPQELIGAAVFLSSK---ASDFVNGHLLFVDGGM 250 (254)
T ss_pred CCCCCcCHHHHHHHHHHHhCc---cccCCcCCEEEECCCe
Confidence 223467799999999887751 1245677777776653
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.5e-16 Score=148.73 Aligned_cols=212 Identities=12% Similarity=0.062 Sum_probs=149.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCH-HHHHHHHcC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI-SQIKKVLEG 84 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~-~~l~~~l~~ 84 (520)
.++++++||||+|+||+++++.|.++| ++|+++++ +.... ...++..+.+|+.|+ +++.+.+.+
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~G-~~v~~~~r--------~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~~ 67 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQG-AQVYGVDK--------QDKPD------LSGNFHFLQLDLSDDLEPLFDWVPS 67 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHCC-CEEEEEeC--------Ccccc------cCCcEEEEECChHHHHHHHHHhhCC
Confidence 456899999999999999999999999 58988543 32211 123578899999987 444455567
Q ss_pred CCEEEEcccCC--------CCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCCCCCCccC
Q 010005 85 ASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDETLTC 152 (520)
Q Consensus 85 ~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~ 152 (520)
+|+|||+|+.. ....+++..+++|+.++.++++++.. .+.+++|++||...+.
T Consensus 68 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~--------------- 132 (235)
T PRK06550 68 VDILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFV--------------- 132 (235)
T ss_pred CCEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcc---------------
Confidence 89999999851 12235677899999999999998854 3456899999987642
Q ss_pred CCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCC-c-hHHHHHHhcCCCceEEecCCCcccccccH
Q 010005 153 CWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-L-VPLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (520)
Q Consensus 153 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~-~-~~~l~~~~~~g~~~~i~g~g~~~~~~i~v 227 (520)
+......|+.+|...+.+.+.++.+ +|+++++++|+.+.++.... . .....+...... ....+...
T Consensus 133 ~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 203 (235)
T PRK06550 133 AGGGGAAYTASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADFEPGGLADWVARET---------PIKRWAEP 203 (235)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCcccccccCchHHHHHHhccC---------CcCCCCCH
Confidence 1123467999999988887776543 58999999999998875421 1 111222222211 22346678
Q ss_pred HHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 228 ~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+|+|++++.++... .....|+.+.+.++.
T Consensus 204 ~~~a~~~~~l~s~~---~~~~~g~~~~~~gg~ 232 (235)
T PRK06550 204 EEVAELTLFLASGK---ADYMQGTIVPIDGGW 232 (235)
T ss_pred HHHHHHHHHHcChh---hccCCCcEEEECCce
Confidence 99999999887511 234567788777653
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.4e-16 Score=151.93 Aligned_cols=222 Identities=14% Similarity=0.086 Sum_probs=151.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++|+++||||+|.||+++++.|.++| ++|+++++.... . ......+.......++..+.+|+.|.+++.++++
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G-~~v~~~~r~~~~-~--~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLG-ADVLIVARDADA-L--AQARDELAEEFPEREVHGLAADVSDDEDRRAILDWV 82 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHH-H--HHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 599985442210 0 0000011111113467889999999988766654
Q ss_pred -----CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|+|||+||.. ....++...+++|+.++.++++++. +.+.+++|++||...+.
T Consensus 83 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~---------- 152 (257)
T PRK09242 83 EDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLT---------- 152 (257)
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCC----------
Confidence 479999999861 2334567789999999999988875 35567999999987652
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc--hHHHHHHhcCCCceEEecCCCccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~--~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
+..+...|+.+|...+.+++.++.+ .|++++.++|+.+.++..... .+..........+ ..
T Consensus 153 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~~~~~~~~~~~~~~~---------~~ 218 (257)
T PRK09242 153 -----HVRSGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPLSDPDYYEQVIERTP---------MR 218 (257)
T ss_pred -----CCCCCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCcccccccCChHHHHHHHhcCC---------CC
Confidence 2234568999999999998877543 589999999999988764322 1222222222221 11
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
-+...+|++.++..++... .....|+.+.+.++
T Consensus 219 ~~~~~~~va~~~~~l~~~~---~~~~~g~~i~~~gg 251 (257)
T PRK09242 219 RVGEPEEVAAAVAFLCMPA---ASYITGQCIAVDGG 251 (257)
T ss_pred CCcCHHHHHHHHHHHhCcc---cccccCCEEEECCC
Confidence 2345899999998877511 13356788888664
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-16 Score=154.47 Aligned_cols=223 Identities=18% Similarity=0.173 Sum_probs=146.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHHc-
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
+++++||||+|+||+++++.|+++| ++|+++|+. ... ..+...+ ...++..+.+|+.|++++.++++
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G-~~v~~~~r~--------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 72 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDG-FKVAIVDYN--------EETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQ 72 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCC--------HHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 5799999999999999999999999 699985543 210 0000111 12357789999999988777665
Q ss_pred ------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHC----C-CCEEEEeecccccccCCCCCCC
Q 010005 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~----g-vkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|+|||+|+... ...+++..+++|+.++.++++++.+. + ..++|++||...+.
T Consensus 73 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~-------- 144 (256)
T PRK08643 73 VVDTFGDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVV-------- 144 (256)
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcccccc--------
Confidence 5799999998721 12345678899999998877777542 2 35899999976541
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEE----ecCC
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFI----IGSG 218 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i----~g~g 218 (520)
+......|+.+|+..|.+++.++. ..|+++++++|+.+.+|.........-. ..+.+... .-..
T Consensus 145 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 215 (256)
T PRK08643 145 -------GNPELAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPMMFDIAHQVGE--NAGKPDEWGMEQFAKD 215 (256)
T ss_pred -------CCCCCchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChhhhHHHhhhcc--ccCCCchHHHHHHhcc
Confidence 112346899999999988777654 3689999999999987642211000000 00000000 0000
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.....+...+|+|.++..++.. ......|+.+.+.++.
T Consensus 216 ~~~~~~~~~~~va~~~~~L~~~---~~~~~~G~~i~vdgg~ 253 (256)
T PRK08643 216 ITLGRLSEPEDVANCVSFLAGP---DSDYITGQTIIVDGGM 253 (256)
T ss_pred CCCCCCcCHHHHHHHHHHHhCc---cccCccCcEEEeCCCe
Confidence 1122356789999999888751 1245778888887653
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.8e-16 Score=150.22 Aligned_cols=217 Identities=15% Similarity=0.112 Sum_probs=147.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
..++++||||||+|.||+++++.|.++| ++|++.++ |+.+ ...+.....+.+.+.+|+.|.+++.+.++
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G-~~v~~~~~-------~~~~--~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~ 72 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDG-ANVRFTYA-------GSKD--AAERLAQETGATAVQTDSADRDAVIDVVRK 72 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEecC-------CCHH--HHHHHHHHhCCeEEecCCCCHHHHHHHHHH
Confidence 3457899999999999999999999999 58877322 1211 11111011245778899999988877775
Q ss_pred --CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCCCCCCCCCccC
Q 010005 84 --GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETLTC 152 (520)
Q Consensus 84 --~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~ 152 (520)
++|++||+||.. .+..+++..+++|+.++.+++..+... +..++|++||..... .
T Consensus 73 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~------------~-- 138 (237)
T PRK12742 73 SGALDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDR------------M-- 138 (237)
T ss_pred hCCCcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEecccccc------------C--
Confidence 389999999872 122356789999999999998776654 246899999975310 0
Q ss_pred CCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHH
Q 010005 153 CWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVEN 229 (520)
Q Consensus 153 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~D 229 (520)
+..+...|+.+|+..|.+++.++.+ .|+++++++|+.+..+......+ ..+...... ....+...+|
T Consensus 139 ~~~~~~~Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~~~~-~~~~~~~~~---------~~~~~~~p~~ 208 (237)
T PRK12742 139 PVAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGP-MKDMMHSFM---------AIKRHGRPEE 208 (237)
T ss_pred CCCCCcchHHhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCccccccH-HHHHHHhcC---------CCCCCCCHHH
Confidence 2245678999999999998876543 58999999999998764322111 111111111 1123467899
Q ss_pred HHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 230 VAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 230 va~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
+++++..++.. ......|+.+.+.++
T Consensus 209 ~a~~~~~l~s~---~~~~~~G~~~~~dgg 234 (237)
T PRK12742 209 VAGMVAWLAGP---EASFVTGAMHTIDGA 234 (237)
T ss_pred HHHHHHHHcCc---ccCcccCCEEEeCCC
Confidence 99999887751 123456777777654
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-16 Score=153.30 Aligned_cols=214 Identities=18% Similarity=0.144 Sum_probs=144.5
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCC----CCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLP----DSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~----~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
+|+||||+|+||+++++.|.++| ++|+++++.. .+. ..+. .......+..+.+|+.|.+++.++++
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G-~~v~~~~r~~-------~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 72 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQG-AKVFLTDIND-------AAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQ 72 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCc-------chHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHH
Confidence 48999999999999999999999 6999854421 110 0000 10011123457899999988876664
Q ss_pred ------CCCEEEEcccCCC-------CCcchhhHHhhhHH----HHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCC
Q 010005 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQ----GAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~----gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|+|||+|+... ...+....+++|+. ++.++++++++.+.+++|++||...++.
T Consensus 73 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~~~~~-------- 144 (251)
T PRK07069 73 AADAMGGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVAAFKA-------- 144 (251)
T ss_pred HHHHcCCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChhhccC--------
Confidence 5799999998721 12245667888988 7788888888888889999999887632
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC-----CCceEEEEecCccccCCCCCchH-----HHHHHhcCCCceEEec
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI-----DGLLTCALRPSNVFGPGDTQLVP-----LLVNLAKPGWTKFIIG 216 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~gi~~~ilRp~~vyGp~~~~~~~-----~l~~~~~~g~~~~i~g 216 (520)
......|+.+|...+.+.+.++.+ .+++++.++|+.+.+|....... .....+..
T Consensus 145 -------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~-------- 209 (251)
T PRK07069 145 -------EPDYTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRKLAR-------- 209 (251)
T ss_pred -------CCCCchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchhHHHHHhc--------
Confidence 123457999999999988876432 35899999999998875432111 11111111
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
+.+...+.+++|++++++.++.. ......|+.+.+.++
T Consensus 210 -~~~~~~~~~~~~va~~~~~l~~~---~~~~~~g~~i~~~~g 247 (251)
T PRK07069 210 -GVPLGRLGEPDDVAHAVLYLASD---ESRFVTGAELVIDGG 247 (251)
T ss_pred -cCCCCCCcCHHHHHHHHHHHcCc---cccCccCCEEEECCC
Confidence 12223456799999999887641 123456666666554
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.3e-16 Score=151.48 Aligned_cols=232 Identities=13% Similarity=0.058 Sum_probs=149.5
Q ss_pred CCCCCCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCCCCC--CCCCcEEEEecCCCHHH
Q 010005 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDSL--SSGRAEYHQVDVRDISQ 77 (520)
Q Consensus 1 m~~~~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~-~~~l~~~~--~~~~v~~~~~Dl~d~~~ 77 (520)
|.+...++++++||||+|+||.++++.|+++| ++|++++... .+... .....+.+ ...++..+.+|++|.++
T Consensus 1 ~~~~~l~~k~vlItGa~~gIG~~~a~~l~~~G-~~vv~i~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~ 75 (257)
T PRK12744 1 MADHSLKGKVVLIAGGAKNLGGLIARDLAAQG-AKAVAIHYNS----AASKADAEETVAAVKAAGAKAVAFQADLTTAAA 75 (257)
T ss_pred CCCCCCCCcEEEEECCCchHHHHHHHHHHHCC-CcEEEEecCC----ccchHHHHHHHHHHHHhCCcEEEEecCcCCHHH
Confidence 44444456899999999999999999999999 5766643221 11111 00000001 12357889999999998
Q ss_pred HHHHHc-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCC
Q 010005 78 IKKVLE-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSH 141 (520)
Q Consensus 78 l~~~l~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~ 141 (520)
+.++++ ++|++||+||.. ....+++..+++|+.++..+++++... ...++++++|..+...
T Consensus 76 ~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~--- 152 (257)
T PRK12744 76 VEKLFDDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAF--- 152 (257)
T ss_pred HHHHHHHHHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhccc---
Confidence 887765 479999999961 222356778999999999999998754 1246676643332210
Q ss_pred CCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc-hHHHHHHhcCCCceEEecC
Q 010005 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL-VPLLVNLAKPGWTKFIIGS 217 (520)
Q Consensus 142 ~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~-~~~l~~~~~~g~~~~i~g~ 217 (520)
......|+.+|+..|.+.+.++.+ .|+++++++||.+.++...+. .+..... ... .....
T Consensus 153 ------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~---~~~-~~~~~ 216 (257)
T PRK12744 153 ------------TPFYSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQEGAEAVAY---HKT-AAALS 216 (257)
T ss_pred ------------CCCcccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhccccccchhhc---ccc-ccccc
Confidence 112468999999999999888654 479999999999977632110 0100000 000 00001
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
......+.+++|++.++..+++. .....|+++++.++..
T Consensus 217 ~~~~~~~~~~~dva~~~~~l~~~----~~~~~g~~~~~~gg~~ 255 (257)
T PRK12744 217 PFSKTGLTDIEDIVPFIRFLVTD----GWWITGQTILINGGYT 255 (257)
T ss_pred ccccCCCCCHHHHHHHHHHhhcc----cceeecceEeecCCcc
Confidence 11122578899999999998871 1234688999987643
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-16 Score=152.41 Aligned_cols=211 Identities=17% Similarity=0.072 Sum_probs=150.4
Q ss_pred EEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC-CCCCcEEEEecCCCHHHHHHHHcC---CC
Q 010005 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL-SSGRAEYHQVDVRDISQIKKVLEG---AS 86 (520)
Q Consensus 12 LVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~-~~~~v~~~~~Dl~d~~~l~~~l~~---~D 86 (520)
+||||+|+||+++++.|+++| ++|++++ |++... .....+ ...+++++.+|+.|.+++.++++. +|
T Consensus 1 lItGas~~iG~~~a~~l~~~G-~~v~~~~--------r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id 71 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEG-ARVTIAS--------RSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFD 71 (230)
T ss_pred CeecCCChHHHHHHHHHHHCC-CEEEEEe--------CCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCC
Confidence 599999999999999999999 5899854 432210 000001 124678899999999999998874 79
Q ss_pred EEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCCh
Q 010005 87 TVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDL 159 (520)
Q Consensus 87 ~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~ 159 (520)
++||+++... ...+++.++++|+.++.++.++....+.+++|++||...+. +..+.+.
T Consensus 72 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~g~iv~~ss~~~~~---------------~~~~~~~ 136 (230)
T PRK07041 72 HVVITAADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAPGGSLTFVSGFAAVR---------------PSASGVL 136 (230)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEECchhhcC---------------CCCcchH
Confidence 9999998721 23456788999999999999977766678999999998763 2234578
Q ss_pred HHHHHHHHHHHHHHhcCCC-CceEEEEecCccccCCCCCc----hHHHHHHhcCCCceEEecCCCcccccccHHHHHHHH
Q 010005 160 MCDLKAQAEALVLFANNID-GLLTCALRPSNVFGPGDTQL----VPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234 (520)
Q Consensus 160 Y~~sK~~~E~~~~~~~~~~-gi~~~ilRp~~vyGp~~~~~----~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai 234 (520)
|+.+|...|.+.+.++.+. ++++++++|+.+-.+..... ...+........+ ...+...+|+|+++
T Consensus 137 Y~~sK~a~~~~~~~la~e~~~irv~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~dva~~~ 207 (230)
T PRK07041 137 QGAINAALEALARGLALELAPVRVNTVSPGLVDTPLWSKLAGDAREAMFAAAAERLP---------ARRVGQPEDVANAI 207 (230)
T ss_pred HHHHHHHHHHHHHHHHHHhhCceEEEEeecccccHHHHhhhccchHHHHHHHHhcCC---------CCCCcCHHHHHHHH
Confidence 9999999999998876542 58899999988765432110 0111122221111 11244689999999
Q ss_pred HHHHHhhhcccccCCCceEEEeCCCC
Q 010005 235 VCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 235 ~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
..++. .....|+.|++.++++
T Consensus 208 ~~l~~-----~~~~~G~~~~v~gg~~ 228 (230)
T PRK07041 208 LFLAA-----NGFTTGSTVLVDGGHA 228 (230)
T ss_pred HHHhc-----CCCcCCcEEEeCCCee
Confidence 99887 3456688999988764
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.3e-16 Score=154.90 Aligned_cols=190 Identities=16% Similarity=0.012 Sum_probs=135.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
+++++|+||||+|.||+++++.|.++| ++|++. .|++++. .....+ ..+..+.+|+.|++++.++++
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G-~~v~~~--------~r~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~ 71 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALG-ARVAIG--------DLDEALAKETAAEL--GLVVGGPLDVTDPASFAAFLDA 71 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEE--------ECCHHHHHHHHHHh--ccceEEEccCCCHHHHHHHHHH
Confidence 346899999999999999999999999 588884 4433210 000111 147789999999988766654
Q ss_pred ------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCC
Q 010005 84 ------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 ------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|++||+||.. ....+...++++|+.++.++.+++ ++.+.+++|++||...+.
T Consensus 72 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 142 (273)
T PRK07825 72 VEADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKI--------- 142 (273)
T ss_pred HHHHcCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccC---------
Confidence 479999999972 122345668899999988877665 456777999999987642
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
+..+...|+.+|+..+.+.+.+.. ..|+++++++|+.+-.+.... . ++.....
T Consensus 143 ------~~~~~~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~~~------------~------~~~~~~~ 198 (273)
T PRK07825 143 ------PVPGMATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTELIAG------------T------GGAKGFK 198 (273)
T ss_pred ------CCCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcchhhcc------------c------ccccCCC
Confidence 123456899999988876655432 368999999999875442110 0 0112235
Q ss_pred cccHHHHHHHHHHHHH
Q 010005 224 FTYVENVAHAHVCAAE 239 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~ 239 (520)
++.++|+|++++.+++
T Consensus 199 ~~~~~~va~~~~~~l~ 214 (273)
T PRK07825 199 NVEPEDVAAAIVGTVA 214 (273)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 7889999999999887
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.5e-16 Score=153.00 Aligned_cols=219 Identities=16% Similarity=0.072 Sum_probs=149.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
+++++++||||+|+||++++++|+++| ++|++++ |+.........+ ...++.++.+|+.|.+++.++++
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G-~~Vv~~~--------r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 74 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHG-ANLILLD--------ISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIK 74 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEec--------CCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHH
Confidence 346899999999999999999999999 5899854 432110000000 12356789999999988887765
Q ss_pred -------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCC
Q 010005 84 -------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 -------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
.+|+|||+|+.. ....+.+..+++|+.++.++++++.. .+..++|++||..... .
T Consensus 75 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~--~----- 147 (263)
T PRK08226 75 RAKEKEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDM--V----- 147 (263)
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcc--c-----
Confidence 479999999971 12234456799999999999998753 3456899999865310 0
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCC--------chHHHHHHhcCCCceEE
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ--------LVPLLVNLAKPGWTKFI 214 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~--------~~~~l~~~~~~g~~~~i 214 (520)
+......|+.+|...|.+.+.++.+ .|++++.++|+.+.++.... ........+..+.
T Consensus 148 -------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---- 216 (263)
T PRK08226 148 -------ADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAI---- 216 (263)
T ss_pred -------CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhccCCCcHHHHHHHhccC----
Confidence 1123467999999999998877643 48999999999998863211 1112222222221
Q ss_pred ecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
....+...+|+|+++..++.. ......|+.+.+.++.
T Consensus 217 -----p~~~~~~~~~va~~~~~l~~~---~~~~~~g~~i~~dgg~ 253 (263)
T PRK08226 217 -----PLRRLADPLEVGELAAFLASD---ESSYLTGTQNVIDGGS 253 (263)
T ss_pred -----CCCCCCCHHHHHHHHHHHcCc---hhcCCcCceEeECCCc
Confidence 223456799999998877641 1245677777777653
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.6e-16 Score=151.67 Aligned_cols=219 Identities=11% Similarity=0.078 Sum_probs=153.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++++|+||||+|+||++++++|.++| ++|+++++. ... ..+...+ ...++..+.+|++|.+++.+++
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G-~~vv~~~r~--------~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~ 79 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAG-ASVVVSDIN--------ADAANHVVDEIQQLGGQAFACRCDITSEQELSALA 79 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCC--------HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 346899999999999999999999999 588885432 210 0000000 1235678899999999887765
Q ss_pred c-------CCCEEEEcccCCC------CCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCC
Q 010005 83 E-------GASTVFYVDATDL------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~~------~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
+ ++|+|||+|+... ...+++..+++|+.++.++++++. +.+..++|++||.+...
T Consensus 80 ~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~-------- 151 (255)
T PRK06113 80 DFALSKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN-------- 151 (255)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecccccC--------
Confidence 4 4799999999721 124556678999999999999986 33446899999976431
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc-hHHHHHHhcCCCceEEecCCCcc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL-VPLLVNLAKPGWTKFIIGSGENM 221 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~-~~~l~~~~~~g~~~~i~g~g~~~ 221 (520)
+..+...|+.+|+..|.+++.++.+ .|+++.++.|+.+-.+..... .+.......... ..
T Consensus 152 -------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~---------~~ 215 (255)
T PRK06113 152 -------KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHT---------PI 215 (255)
T ss_pred -------CCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecccccccccccccCHHHHHHHHhcC---------CC
Confidence 2234568999999999999887643 589999999999876643322 222222222211 12
Q ss_pred cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
..+...+|+++++..++.. ......|+.+++.++..
T Consensus 216 ~~~~~~~d~a~~~~~l~~~---~~~~~~G~~i~~~gg~~ 251 (255)
T PRK06113 216 RRLGQPQDIANAALFLCSP---AASWVSGQILTVSGGGV 251 (255)
T ss_pred CCCcCHHHHHHHHHHHcCc---cccCccCCEEEECCCcc
Confidence 3456799999999988761 12345789999988753
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-16 Score=153.69 Aligned_cols=219 Identities=16% Similarity=0.085 Sum_probs=144.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
.+++++|+||||+|+||.+++++|.++| ++|+++|+ +... ........+..++.+|+.|.+++.++++
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G-~~v~~~~r--------~~~~--~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 72 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEG-ATVVVGDI--------DPEA--GKAAADEVGGLFVPTDVTDEDAVNALFDT 72 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcC-CEEEEEeC--------CHHH--HHHHHHHcCCcEEEeeCCCHHHHHHHHHH
Confidence 3567899999999999999999999999 59998544 3221 0000000122578999999998887775
Q ss_pred ------CCCEEEEcccCCCC---------CcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeeccc-ccccCCCCC
Q 010005 84 ------GASTVFYVDATDLN---------TDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTAD-VVFDGSHDI 143 (520)
Q Consensus 84 ------~~D~Vih~aa~~~~---------~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~-vyg~~~~~~ 143 (520)
++|+|||+|+.... ...+...+++|+.++.++++++. +.+..++|++||.. ++|.
T Consensus 73 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g~----- 147 (255)
T PRK06057 73 AAETYGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGS----- 147 (255)
T ss_pred HHHHcCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccCC-----
Confidence 47999999986211 12356788999999988777764 34556899999864 3421
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCc
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~ 220 (520)
..+...|+.+|+..+.+.+.++. ..|++++++||+.+.+|........-..... +......
T Consensus 148 ----------~~~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~--~~~~~~~---- 211 (255)
T PRK06057 148 ----------ATSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAKDPERAA--RRLVHVP---- 211 (255)
T ss_pred ----------CCCCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhhccCCHHHHH--HHHhcCC----
Confidence 12345799999877777665432 2589999999999988754321110000000 0000011
Q ss_pred ccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
...+..++|+++++..++.. ......|+.+.+.++
T Consensus 212 ~~~~~~~~~~a~~~~~l~~~---~~~~~~g~~~~~~~g 246 (255)
T PRK06057 212 MGRFAEPEEIAAAVAFLASD---DASFITASTFLVDGG 246 (255)
T ss_pred CCCCcCHHHHHHHHHHHhCc---cccCccCcEEEECCC
Confidence 12578899999998876641 123456778887664
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.8e-16 Score=153.56 Aligned_cols=217 Identities=14% Similarity=0.138 Sum_probs=148.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
++++++||||+|.||++++++|.++| ++|+++|+ +... ..+.+.+ ...++..+.+|+.|.+++.++++
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G-~~V~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 79 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAG-AKVAILDR--------NQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQ 79 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeC--------CHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 46899999999999999999999999 58998544 3210 0000111 12357789999999988877664
Q ss_pred -------CCCEEEEcccCCC----------------------CCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEe
Q 010005 84 -------GASTVFYVDATDL----------------------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYN 130 (520)
Q Consensus 84 -------~~D~Vih~aa~~~----------------------~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~ 130 (520)
++|++||+|+... ...++...+++|+.++..+++++ ++.+..++|++
T Consensus 80 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~i 159 (278)
T PRK08277 80 QILEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINI 159 (278)
T ss_pred HHHHHcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 5899999998521 12345678899999998665554 44556789999
Q ss_pred ecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch-------H
Q 010005 131 STADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-------P 200 (520)
Q Consensus 131 SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~-------~ 200 (520)
||...+. +..+...|+.+|+..|.+.+.++.+ +|+++.+++|+.+.++..+... .
T Consensus 160 sS~~~~~---------------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~ 224 (278)
T PRK08277 160 SSMNAFT---------------PLTKVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNEDGSLT 224 (278)
T ss_pred ccchhcC---------------CCCCCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhccccccch
Confidence 9988762 2234568999999999998877554 4899999999999987532211 0
Q ss_pred HHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 201 LLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 201 ~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
........ .....-+...+|+|++++.++..- ......|+...+.++
T Consensus 225 ~~~~~~~~---------~~p~~r~~~~~dva~~~~~l~s~~--~~~~~tG~~i~vdgG 271 (278)
T PRK08277 225 ERANKILA---------HTPMGRFGKPEELLGTLLWLADEK--ASSFVTGVVLPVDGG 271 (278)
T ss_pred hHHHHHhc---------cCCccCCCCHHHHHHHHHHHcCcc--ccCCcCCCEEEECCC
Confidence 01111111 112234566899999999877510 123467888888765
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.4e-16 Score=157.37 Aligned_cols=213 Identities=15% Similarity=0.116 Sum_probs=144.6
Q ss_pred CCCCCCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHH
Q 010005 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQ 77 (520)
Q Consensus 1 m~~~~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~ 77 (520)
|+..++++++|+||||+|.||+++++.|.++| ++|++++ |++... ...+.+ ...++..+.+|+.|.++
T Consensus 1 ~~~~~l~~k~vlITGas~gIG~~la~~la~~G-~~Vvl~~--------R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~ 71 (334)
T PRK07109 1 MMLKPIGRQVVVITGASAGVGRATARAFARRG-AKVVLLA--------RGEEGLEALAAEIRAAGGEALAVVADVADAEA 71 (334)
T ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEE--------CCHHHHHHHHHHHHHcCCcEEEEEecCCCHHH
Confidence 44455667899999999999999999999999 5898844 432210 000100 12357789999999998
Q ss_pred HHHHHc-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHH----HHHHHHCCCCEEEEeecccccccC
Q 010005 78 IKKVLE-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNV----VTACRECKVRRLVYNSTADVVFDG 139 (520)
Q Consensus 78 l~~~l~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~l----l~aa~~~gvkr~V~~SS~~vyg~~ 139 (520)
+.++++ ++|++||+|+.. ....+++..+++|+.++.++ ++.+++.+..++|++||...+..
T Consensus 72 v~~~~~~~~~~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~~- 150 (334)
T PRK07109 72 VQAAADRAEEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYRS- 150 (334)
T ss_pred HHHHHHHHHHHCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhccC-
Confidence 887764 589999999862 12234566788887777664 44455555679999999987631
Q ss_pred CCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC-----CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEE
Q 010005 140 SHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI-----DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFI 214 (520)
Q Consensus 140 ~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i 214 (520)
......|+.+|...+.+.+.++.+ .++++++++|+.+-+|.... . ......
T Consensus 151 --------------~~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~~~----~-~~~~~~----- 206 (334)
T PRK07109 151 --------------IPLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQFDW----A-RSRLPV----- 206 (334)
T ss_pred --------------CCcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchhhh----h-hhhccc-----
Confidence 123468999999988887665422 47999999999987663211 1 000000
Q ss_pred ecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeC
Q 010005 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (520)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~ 257 (520)
.......+..++|+|++++.+++ .+ .+.++++.
T Consensus 207 --~~~~~~~~~~pe~vA~~i~~~~~-----~~---~~~~~vg~ 239 (334)
T PRK07109 207 --EPQPVPPIYQPEVVADAILYAAE-----HP---RRELWVGG 239 (334)
T ss_pred --cccCCCCCCCHHHHHHHHHHHHh-----CC---CcEEEeCc
Confidence 01122346679999999999987 22 34566665
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.5e-16 Score=153.56 Aligned_cols=197 Identities=17% Similarity=0.091 Sum_probs=137.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
||++|||||+|+||++++++|+++| ++|++++ |+..+ ..+.......++.++.+|+.|.+++.++++
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G-~~V~~~~--------r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 71 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEG-WRVGAYD--------INEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFA 71 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCC-CeEEEEe--------CCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 3789999999999999999999999 5999844 43321 011111123468899999999988887665
Q ss_pred -----CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|+|||+||... ...+++.++++|+.++.++++++.. .+..++|++||...+.
T Consensus 72 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~---------- 141 (260)
T PRK08267 72 AATGGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIY---------- 141 (260)
T ss_pred HHcCCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCc----------
Confidence 4699999999721 2235677899999999999988853 4557899999975431
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (520)
+......|+.+|+..|.+.+.++. .+|+++++++|+.+-.+.............. ....-.
T Consensus 142 -----~~~~~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~-----------~~~~~~ 205 (260)
T PRK08267 142 -----GQPGLAVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTAMLDGTSNEVDAGST-----------KRLGVR 205 (260)
T ss_pred -----CCCCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCcccccccchhhhhhH-----------hhccCC
Confidence 112346899999999988887753 3689999999999876532210000000000 001113
Q ss_pred ccHHHHHHHHHHHHH
Q 010005 225 TYVENVAHAHVCAAE 239 (520)
Q Consensus 225 i~v~Dva~ai~~~~~ 239 (520)
+..+|++++++.+++
T Consensus 206 ~~~~~va~~~~~~~~ 220 (260)
T PRK08267 206 LTPEDVAEAVWAAVQ 220 (260)
T ss_pred CCHHHHHHHHHHHHh
Confidence 557999999998886
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-15 Score=148.26 Aligned_cols=221 Identities=13% Similarity=0.065 Sum_probs=146.2
Q ss_pred CCCeEEEEcCCC--hhHHHHHHHHHhcCCcEEEEecCCcccc-cCCC--CC-CCCCCCCC--CCCCcEEEEecCCCHHHH
Q 010005 7 IPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQ-LDPS--ES-NSLLPDSL--SSGRAEYHQVDVRDISQI 78 (520)
Q Consensus 7 ~~~~ILVtGatG--fIG~~lv~~L~~~g~~~V~~~D~~~~~~-l~r~--~~-~~~l~~~~--~~~~v~~~~~Dl~d~~~l 78 (520)
++++||||||+| .||.++++.|.++| ++|+++++..... .... .. ...+...+ ...++.++.+|++|.+++
T Consensus 4 ~~k~vlItGas~~~giG~~la~~l~~~G-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 82 (256)
T PRK12748 4 MKKIALVTGASRLNGIGAAVCRRLAAKG-IDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAP 82 (256)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHcC-CcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence 568999999996 69999999999999 5999865431100 0000 00 00000000 123578899999999887
Q ss_pred HHHHc-------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHC----CCCEEEEeecccccccCC
Q 010005 79 KKVLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGS 140 (520)
Q Consensus 79 ~~~l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~----gvkr~V~~SS~~vyg~~~ 140 (520)
.++++ ++|+|||+|+... ...+++..+++|+.++.++++++... +.+++|++||...++
T Consensus 83 ~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~--- 159 (256)
T PRK12748 83 NRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLG--- 159 (256)
T ss_pred HHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccC---
Confidence 76664 4799999998721 12345667899999999999998643 346899999987653
Q ss_pred CCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecC
Q 010005 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGS 217 (520)
Q Consensus 141 ~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~ 217 (520)
+..+...|+.+|+..|.+++.++.+ .|++++.++|+.+..+.... .......... +
T Consensus 160 ------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~~~~---~~~~~~~~~~----~-- 218 (256)
T PRK12748 160 ------------PMPDELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGWITE---ELKHHLVPKF----P-- 218 (256)
T ss_pred ------------CCCCchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCCCCh---hHHHhhhccC----C--
Confidence 1123468999999999998876543 58999999999887653221 1111111111 1
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
...+.-.+|+++++..++.. ......|+.+++.++
T Consensus 219 ---~~~~~~~~~~a~~~~~l~~~---~~~~~~g~~~~~d~g 253 (256)
T PRK12748 219 ---QGRVGEPVDAARLIAFLVSE---EAKWITGQVIHSEGG 253 (256)
T ss_pred ---CCCCcCHHHHHHHHHHHhCc---ccccccCCEEEecCC
Confidence 11233479999998877651 123456888888765
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.9e-16 Score=151.78 Aligned_cols=219 Identities=11% Similarity=0.088 Sum_probs=146.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
++|+++||||+|+||+++++.|.+.| ++|.+.+. |.... ......+ .......+.+|+.|.+++.++++
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G-~~v~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDG-ALVAIHYG-------NRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYS 74 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CeEEEEcC-------CCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHH
Confidence 35899999999999999999999999 58877432 11110 0000000 12346678999999876554332
Q ss_pred -------------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCC
Q 010005 84 -------------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSH 141 (520)
Q Consensus 84 -------------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~ 141 (520)
++|++||+||... ....++.++++|+.++..+++++... +..++|++||...+.
T Consensus 75 ~~~~~~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~---- 150 (252)
T PRK12747 75 SLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI---- 150 (252)
T ss_pred HHHHHhhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCccccc----
Confidence 5899999999621 11235778889999999999888654 235899999997652
Q ss_pred CCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchH-HHHHHhcCCCceEEecC
Q 010005 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-LLVNLAKPGWTKFIIGS 217 (520)
Q Consensus 142 ~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~-~l~~~~~~g~~~~i~g~ 217 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.++.|+.+.++......+ ........ .
T Consensus 151 -----------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~--------~ 211 (252)
T PRK12747 151 -----------SLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAELLSDPMMKQYAT--------T 211 (252)
T ss_pred -----------CCCCchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhcccCHHHHHHHH--------h
Confidence 1123468999999999998877543 58999999999998875322111 01111100 0
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
......+.+++|+|+++..++.. ......|+.+.+.++.
T Consensus 212 ~~~~~~~~~~~dva~~~~~l~s~---~~~~~~G~~i~vdgg~ 250 (252)
T PRK12747 212 ISAFNRLGEVEDIADTAAFLASP---DSRWVTGQLIDVSGGS 250 (252)
T ss_pred cCcccCCCCHHHHHHHHHHHcCc---cccCcCCcEEEecCCc
Confidence 01123467899999999887751 1234667888887653
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-15 Score=153.02 Aligned_cols=178 Identities=11% Similarity=0.029 Sum_probs=123.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-----CCCCCCCCCCCcEEEEecCCCHHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-----SLLPDSLSSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-----~~l~~~~~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
++++|+||||+|+||+++++.|.++| ++|++++ |+..+ ..+.......++.++.+|++|.+++.++
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G-~~vi~~~--------r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~ 85 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKG-AHVVLAV--------RNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAA 85 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCC-CEEEEEe--------CCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHH
Confidence 46899999999999999999999999 5888844 33221 0111111124578899999999988777
Q ss_pred Hc-------CCCEEEEcccCC-----CCCcchhhHHhhhHHH----HHHHHHHHHHCCCCEEEEeecccccccCCCCCCC
Q 010005 82 LE-------GASTVFYVDATD-----LNTDDFYNCYMIIVQG----AKNVVTACRECKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 82 l~-------~~D~Vih~aa~~-----~~~~~~~~~~~~Nv~g----t~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++ ++|+|||+||.. ....+++..+++|+.| +..+++.+++.+.+|+|++||...+..+......
T Consensus 86 ~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~~~ 165 (306)
T PRK06197 86 ADALRAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHRIRAAIHFDD 165 (306)
T ss_pred HHHHHhhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHhccCCCCccc
Confidence 64 489999999972 1234567789999999 6677777777777799999998755322111111
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEE--EEecCccccCCC
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTC--ALRPSNVFGPGD 195 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~--ilRp~~vyGp~~ 195 (520)
.+++. +..+...|+.||+..+.+.+.++.+ .|++++ ++.||.+..+..
T Consensus 166 ~~~~~--~~~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~~ 218 (306)
T PRK06197 166 LQWER--RYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTELA 218 (306)
T ss_pred cCccc--CCCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCccc
Confidence 11111 3355678999999999888876543 455544 457998876643
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.5e-16 Score=151.18 Aligned_cols=224 Identities=13% Similarity=0.061 Sum_probs=150.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++++++||||+|.||+++++.|+++| ++|+++|+.... +. .....+.......++..+.+|++|++++.++++
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G-~~vv~~~r~~~~-~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREG-AAVALADLDAAL-AE--RAAAAIARDVAGARVLAVPADVTDAASVAAAVAAA 80 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHH-HH--HHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHH
Confidence 457899999999999999999999999 589985542210 00 000011110012457789999999988887765
Q ss_pred -----CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|++||+||.. ....+++..+++|+.++.++.+++.. .+..++|++||...+.
T Consensus 81 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 150 (260)
T PRK07063 81 EEAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFK---------- 150 (260)
T ss_pred HHHhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhcc----------
Confidence 589999999962 12345677899999999998888753 4456899999986542
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchH-----H-HHHHhcCCCceEEecCC
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-----L-LVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~-----~-l~~~~~~g~~~~i~g~g 218 (520)
+..+...|+.+|+..+.+.+.++.+ +|+++.+++||.+-.+....... . .........
T Consensus 151 -----~~~~~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~-------- 217 (260)
T PRK07063 151 -----IIPGCFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQLTEDWWNAQPDPAAARAETLALQ-------- 217 (260)
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChhhhhhhhccCChHHHHHHHHhcC--------
Confidence 1123457999999999998877543 58999999999886553211100 0 011111100
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
...-+...+|+|.+++.++.. ......|+...+.++..
T Consensus 218 -~~~r~~~~~~va~~~~fl~s~---~~~~itG~~i~vdgg~~ 255 (260)
T PRK07063 218 -PMKRIGRPEEVAMTAVFLASD---EAPFINATCITIDGGRS 255 (260)
T ss_pred -CCCCCCCHHHHHHHHHHHcCc---cccccCCcEEEECCCee
Confidence 112245689999999987751 12456788888876643
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.4e-16 Score=152.71 Aligned_cols=219 Identities=12% Similarity=0.102 Sum_probs=153.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcE-EEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHH
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCI-VRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~-V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~ 80 (520)
.+++++|+||||+|.||+++++.|.++|. + |+++++ +..+. .....+ ...++.++.+|++|++++.+
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~-~~V~~~~r--------~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 73 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGA-AGLVICGR--------NAEKGEAQAAELEALGAKAVFVQADLSDVEDCRR 73 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCC-CeEEEEcC--------CHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHH
Confidence 45678999999999999999999999995 6 888543 32210 000000 12356778999999998887
Q ss_pred HHc-------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHC----C-CCEEEEeecccccccCCC
Q 010005 81 VLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSH 141 (520)
Q Consensus 81 ~l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~----g-vkr~V~~SS~~vyg~~~~ 141 (520)
+++ ++|+|||+++... ....++.++++|+.++.++++++.+. + ..++|++||...++.
T Consensus 74 ~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~--- 150 (260)
T PRK06198 74 VVAAADEAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGG--- 150 (260)
T ss_pred HHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccC---
Confidence 765 4799999998721 22334667899999999999888542 2 357999999887631
Q ss_pred CCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCC-------chHHHHHHhcCCCc
Q 010005 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-------LVPLLVNLAKPGWT 211 (520)
Q Consensus 142 ~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~-------~~~~l~~~~~~g~~ 211 (520)
......|+.+|...|.+.+.++.+ .+++++.++|+.++++.... ....+.......
T Consensus 151 ------------~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~-- 216 (260)
T PRK06198 151 ------------QPFLAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFHGAPDDWLEKAAAT-- 216 (260)
T ss_pred ------------CCCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhccCCChHHHHHHhcc--
Confidence 123468999999999998876543 57999999999999886421 111122222111
Q ss_pred eEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 212 KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 212 ~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.....+++++|+++++..++... .....|+.+++.++.
T Consensus 217 -------~~~~~~~~~~~~a~~~~~l~~~~---~~~~~G~~~~~~~~~ 254 (260)
T PRK06198 217 -------QPFGRLLDPDEVARAVAFLLSDE---SGLMTGSVIDFDQSV 254 (260)
T ss_pred -------CCccCCcCHHHHHHHHHHHcChh---hCCccCceEeECCcc
Confidence 12345678999999999887521 235678888887754
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.4e-16 Score=149.95 Aligned_cols=219 Identities=16% Similarity=0.102 Sum_probs=148.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++++++||||+|.||.++++.|.++| ++|++++ |++.+. .+.+.+ ...++.++.+|+.|.+++.+++
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G-~~v~~~~--------r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 74 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREG-AKVVVGA--------RRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALV 74 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEe--------CCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH
Confidence 346899999999999999999999999 5899844 432210 000111 1235778999999998888777
Q ss_pred c-------CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHH----HHHCCCCEEEEeecccccccCCCCC
Q 010005 83 E-------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~a----a~~~gvkr~V~~SS~~vyg~~~~~~ 143 (520)
+ ++|++||+||... ...+++..+++|+.++..+.++ +++.+..++|++||...+..
T Consensus 75 ~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~~~----- 149 (254)
T PRK07478 75 ALAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTA----- 149 (254)
T ss_pred HHHHHhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhhcc-----
Confidence 5 5899999998621 1134577899999888776554 45556678999999866421
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc--hHHHHHHhcCCCceEEecCC
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~--~~~l~~~~~~g~~~~i~g~g 218 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+-.+..+.. .+..........
T Consensus 150 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~-------- 212 (254)
T PRK07478 150 ---------GFPGMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRAMGDTPEALAFVAGLH-------- 212 (254)
T ss_pred ---------CCCCcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcccccccCCHHHHHHHHhcC--------
Confidence 1123568999999999998877654 479999999999876632211 111111111111
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
....+...+|+|++++.++.. ......|+++.+.++.
T Consensus 213 -~~~~~~~~~~va~~~~~l~s~---~~~~~~G~~~~~dgg~ 249 (254)
T PRK07478 213 -ALKRMAQPEEIAQAALFLASD---AASFVTGTALLVDGGV 249 (254)
T ss_pred -CCCCCcCHHHHHHHHHHHcCc---hhcCCCCCeEEeCCch
Confidence 112355699999999987751 1234567888886653
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-15 Score=147.53 Aligned_cols=189 Identities=15% Similarity=0.038 Sum_probs=136.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-----CCCCCCCCCCCcEEEEecCCCHHHHHHHH
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-----SLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-----~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
+++++||||+|.||++++++|.++| ++|++.++ ++.+ ..+.......++.++.+|++|.+++.+++
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g-~~v~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 72 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKG-RDLALCAR--------RTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVF 72 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeC--------CHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHH
Confidence 5789999999999999999999999 58888543 3221 01111112346788999999998877666
Q ss_pred c-------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCC
Q 010005 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
+ ++|+|||+||... ....+...+++|+.++.++++++. +.+.+++|++||...+..
T Consensus 73 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~------ 146 (248)
T PRK08251 73 AEFRDELGGLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRG------ 146 (248)
T ss_pred HHHHHHcCCCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccC------
Confidence 4 5899999998721 123345678999999999888874 456789999999765421
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcc
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (520)
...+...|+.||+..+.+.+.+..+ .++++++++|+.+.++.... . ++ .
T Consensus 147 --------~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~--------~---------~~---~ 198 (248)
T PRK08251 147 --------LPGVKAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSEMNAK--------A---------KS---T 198 (248)
T ss_pred --------CCCCcccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcchhhhc--------c---------cc---C
Confidence 0123568999999999888766532 57999999999998663211 0 00 1
Q ss_pred cccccHHHHHHHHHHHHH
Q 010005 222 SDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~ 239 (520)
...+..+|.|++++.+++
T Consensus 199 ~~~~~~~~~a~~i~~~~~ 216 (248)
T PRK08251 199 PFMVDTETGVKALVKAIE 216 (248)
T ss_pred CccCCHHHHHHHHHHHHh
Confidence 134678999999998887
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-15 Score=150.32 Aligned_cols=218 Identities=16% Similarity=0.145 Sum_probs=149.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
.++++++||||+|.||++++++|.++| ++|+++|+ +... ..+.+.. ..++.++.+|+.|.+++.++++
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G-~~V~~~~r--------~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~ 73 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAG-ARVAIVDI--------DADNGAAVAASL-GERARFIATDITDDAAIERAVAT 73 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeC--------CHHHHHHHHHHh-CCeeEEEEecCCCHHHHHHHHHH
Confidence 457899999999999999999999999 59999544 3221 0111111 2357889999999998877765
Q ss_pred ------CCCEEEEcccCC------CCCcchhhHHhhhHHHHHHHHHHHHH---CCCCEEEEeecccccccCCCCCCCCCC
Q 010005 84 ------GASTVFYVDATD------LNTDDFYNCYMIIVQGAKNVVTACRE---CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 ------~~D~Vih~aa~~------~~~~~~~~~~~~Nv~gt~~ll~aa~~---~gvkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
.+|++||+|+.. ....++...+++|+.++.++.+++.. .+-.++|++||.....
T Consensus 74 ~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~----------- 142 (261)
T PRK08265 74 VVARFGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKF----------- 142 (261)
T ss_pred HHHHhCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhcc-----------
Confidence 479999999861 22345677899999999999988754 2335899999976541
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchH---HHHHHhcCCCceEEecCCCccc
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP---LLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~---~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
+......|+.+|+..+.+.+.++.+ +|+++++++|+.+..+....... ...+.... ......
T Consensus 143 ----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~~~~~~~~~~~~~~--------~~~p~~ 210 (261)
T PRK08265 143 ----AQTGRWLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDELSGGDRAKADRVAA--------PFHLLG 210 (261)
T ss_pred ----CCCCCchhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChhhhhhcccchhHHHHhhc--------ccCCCC
Confidence 1123457999999999988876543 58999999999887653211100 00000000 001122
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.+...+|+|+++..++.. ......|+.+.+.++.
T Consensus 211 r~~~p~dva~~~~~l~s~---~~~~~tG~~i~vdgg~ 244 (261)
T PRK08265 211 RVGDPEEVAQVVAFLCSD---AASFVTGADYAVDGGY 244 (261)
T ss_pred CccCHHHHHHHHHHHcCc---cccCccCcEEEECCCe
Confidence 345689999999988761 1245678888887764
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-15 Score=147.30 Aligned_cols=212 Identities=13% Similarity=0.020 Sum_probs=145.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
|+|++|||||+|.||++++++|.++| ++|+++|+ ++.. ..+.+...++..+.+|+.|.+++.++++
T Consensus 1 ~~k~vlItGas~gIG~~ia~~l~~~G-~~V~~~~r--------~~~~--~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 69 (236)
T PRK06483 1 MPAPILITGAGQRIGLALAWHLLAQG-QPVIVSYR--------THYP--AIDGLRQAGAQCIQADFSTNAGIMAFIDELK 69 (236)
T ss_pred CCceEEEECCCChHHHHHHHHHHHCC-CeEEEEeC--------Cchh--HHHHHHHcCCEEEEcCCCCHHHHHHHHHHHH
Confidence 35799999999999999999999999 59998544 3221 1111112246789999999988776654
Q ss_pred ----CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CC--CCEEEEeecccccccCCCCCCCC
Q 010005 84 ----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CK--VRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 ----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~g--vkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|++||+||.. ....+++..+++|+.++..+.+++.. .+ ..++|++||.....
T Consensus 70 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~--------- 140 (236)
T PRK06483 70 QHTDGLRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEK--------- 140 (236)
T ss_pred hhCCCccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhcc---------
Confidence 379999999861 12345677899999999877766654 33 35899999865421
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCCC--CceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (520)
+......|+.+|+..|.+++.++.+. ++++.+++|+.+.-+.... +..........+. .-+
T Consensus 141 ------~~~~~~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~~~~~~~~--~~~~~~~~~~~~~---------~~~ 203 (236)
T PRK06483 141 ------GSDKHIAYAASKAALDNMTLSFAAKLAPEVKVNSIAPALILFNEGDD--AAYRQKALAKSLL---------KIE 203 (236)
T ss_pred ------CCCCCccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCceecCCCCC--HHHHHHHhccCcc---------ccC
Confidence 11234689999999999998886653 5999999999874322111 1111122221111 113
Q ss_pred ccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 225 i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
...+|+++++..++. .....|+++.+.++..
T Consensus 204 ~~~~~va~~~~~l~~-----~~~~~G~~i~vdgg~~ 234 (236)
T PRK06483 204 PGEEEIIDLVDYLLT-----SCYVTGRSLPVDGGRH 234 (236)
T ss_pred CCHHHHHHHHHHHhc-----CCCcCCcEEEeCcccc
Confidence 358999999998886 3567888888877643
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=9e-16 Score=151.57 Aligned_cols=197 Identities=17% Similarity=0.096 Sum_probs=136.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHHc--
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
|+|+||||+|.||+++++.|.++| ++|++.++ +..+ ......+ ...++.++.+|+.|.+++.++++
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g-~~V~~~~r--------~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i 71 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREG-WRLALADV--------NEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQAC 71 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCC-CEEEEEeC--------CHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 589999999999999999999999 58988543 3221 0000000 12457789999999988877765
Q ss_pred -----CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHH----HHHCCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~a----a~~~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|+|||+||... ...+.+..+++|+.++.++.++ +++.+..++|++||...+.
T Consensus 72 ~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~---------- 141 (270)
T PRK05650 72 EEKWGGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLM---------- 141 (270)
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcC----------
Confidence 5899999999721 1134455788998888886666 4566778999999987652
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc---hHHHHHHhcCCCceEEecCCCcc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL---VPLLVNLAKPGWTKFIIGSGENM 221 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~---~~~l~~~~~~g~~~~i~g~g~~~ 221 (520)
+....+.|+.+|+..+.+.+.++.+ .|+++++++|+.+.++..... .+........ ...
T Consensus 142 -----~~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~----------~~~ 206 (270)
T PRK05650 142 -----QGPAMSSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLLDSFRGPNPAMKAQVGK----------LLE 206 (270)
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCcccccccCchhHHHHHHH----------Hhh
Confidence 2234578999999977776666543 589999999999987753211 1111111000 001
Q ss_pred cccccHHHHHHHHHHHHH
Q 010005 222 SDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~ 239 (520)
..+++++|+|++++.+++
T Consensus 207 ~~~~~~~~vA~~i~~~l~ 224 (270)
T PRK05650 207 KSPITAADIADYIYQQVA 224 (270)
T ss_pred cCCCCHHHHHHHHHHHHh
Confidence 235789999999999887
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.6e-16 Score=150.34 Aligned_cols=216 Identities=13% Similarity=0.078 Sum_probs=150.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
++++|+||||+|+||+++++.|.++| ++|+++++ ++.. ..+...+ ...++..+.+|+.|.+++.++++
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G-~~v~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAG-AHVLVNGR--------NAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFA 80 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcC-CeEEEEeC--------CHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHH
Confidence 46899999999999999999999999 59999544 3220 0000000 12357889999999988877765
Q ss_pred -------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCC
Q 010005 84 -------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 -------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
+.|+|||+++.. ....+++..+++|+.++.++.+++.+ .+.+++|++||...+.
T Consensus 81 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~-------- 152 (256)
T PRK06124 81 RIDAEHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQV-------- 152 (256)
T ss_pred HHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhcc--------
Confidence 369999999972 12235567899999999999976654 5678999999976541
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch--HHHHHHhcCCCceEEecCCCc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGEN 220 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~--~~l~~~~~~g~~~~i~g~g~~ 220 (520)
+......|+.+|...+.+++.++.+ .|+++.+++|+.+.++...... +.+........ .
T Consensus 153 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~---------~ 216 (256)
T PRK06124 153 -------ARAGDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAMAADPAVGPWLAQRT---------P 216 (256)
T ss_pred -------CCCCccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhhccChHHHHHHHhcC---------C
Confidence 1123468999999999988876543 4899999999999988532211 11212222111 1
Q ss_pred ccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
...+++++|+++++..++.. ......|+.+.+.++
T Consensus 217 ~~~~~~~~~~a~~~~~l~~~---~~~~~~G~~i~~dgg 251 (256)
T PRK06124 217 LGRWGRPEEIAGAAVFLASP---AASYVNGHVLAVDGG 251 (256)
T ss_pred CCCCCCHHHHHHHHHHHcCc---ccCCcCCCEEEECCC
Confidence 23478899999999998862 122456777777654
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.6e-16 Score=156.12 Aligned_cols=212 Identities=16% Similarity=0.101 Sum_probs=139.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
.++++|+||||+|+||+++++.|+++| ++|+++ .|+..+. .....+ .++.++.+|++|.+++.++++
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G-~~Vv~~--------~R~~~~~~~~~~~l--~~v~~~~~Dl~d~~~v~~~~~~ 92 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAG-AHVIVP--------ARRPDVAREALAGI--DGVEVVMLDLADLESVRAFAER 92 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEE--------eCCHHHHHHHHHHh--hhCeEEEccCCCHHHHHHHHHH
Confidence 356899999999999999999999999 589984 4443210 000111 237889999999998877664
Q ss_pred ------CCCEEEEcccCC-----CCCcchhhHHhhhHHHHHHHHH----HHHHCCCCEEEEeecccccccCCCCCCCCCC
Q 010005 84 ------GASTVFYVDATD-----LNTDDFYNCYMIIVQGAKNVVT----ACRECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 ------~~D~Vih~aa~~-----~~~~~~~~~~~~Nv~gt~~ll~----aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
++|+|||+||.. .....++..+++|+.++.++.+ ++++.+..|+|++||.......... ...+.
T Consensus 93 ~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~-~~~~~ 171 (315)
T PRK06196 93 FLDSGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSPIRW-DDPHF 171 (315)
T ss_pred HHhcCCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCCCCc-cccCc
Confidence 589999999972 1223567789999999665555 4555655799999997643211100 00011
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHH-HH--HHhcCCCceEEecCCCcc-
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPL-LV--NLAKPGWTKFIIGSGENM- 221 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~-l~--~~~~~g~~~~i~g~g~~~- 221 (520)
.. +..+...|+.||+..+.+.+.++. .+|++++++|||.+.++..+..... .. ..+... +...
T Consensus 172 ~~--~~~~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~--------~~~~~ 241 (315)
T PRK06196 172 TR--GYDKWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQRHLPREEQVALGWVDEH--------GNPID 241 (315)
T ss_pred cC--CCChHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCccccCChhhhhhhhhhhhh--------hhhhh
Confidence 11 234557899999999988776643 3689999999999998864322110 00 000000 0000
Q ss_pred cccccHHHHHHHHHHHHH
Q 010005 222 SDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~ 239 (520)
..+...+|.|.+++.++.
T Consensus 242 ~~~~~~~~~a~~~~~l~~ 259 (315)
T PRK06196 242 PGFKTPAQGAATQVWAAT 259 (315)
T ss_pred hhcCCHhHHHHHHHHHhc
Confidence 024568999999998886
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.8e-16 Score=148.79 Aligned_cols=192 Identities=14% Similarity=0.046 Sum_probs=136.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~-~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
||+|+||||+|+||.+++++|+++| ++|+++|+.... ... ...+. .....++.++++|+.|.+++.++++
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G-~~Vi~~~r~~~~----~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 74 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAG-ARLYLAARDVER----LERLADDLR-ARGAVAVSTHELDILDTASHAAFLDSLP 74 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcC-CEEEEEeCCHHH----HHHHHHHHH-HhcCCeEEEEecCCCChHHHHHHHHHHh
Confidence 4789999999999999999999999 589995543210 000 00000 0112467899999999998887766
Q ss_pred -CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCCCCCCcc
Q 010005 84 -GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDETLT 151 (520)
Q Consensus 84 -~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~ 151 (520)
.+|+|||.+|.. .+..++...+++|+.++.++++++.. .+.+++|++||.....
T Consensus 75 ~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-------------- 140 (243)
T PRK07102 75 ALPDIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGDR-------------- 140 (243)
T ss_pred hcCCEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecccccC--------------
Confidence 369999999861 12233456789999999999988764 4678999999875321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhc---CCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHH
Q 010005 152 CCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVE 228 (520)
Q Consensus 152 ~~~~p~~~Y~~sK~~~E~~~~~~~---~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~ 228 (520)
+......|+.+|...+.+.+.++ ...|+++.+++|+.++++.... . . . .....+.++
T Consensus 141 -~~~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~~~~~--------~--~----~-----~~~~~~~~~ 200 (243)
T PRK07102 141 -GRASNYVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTPMTAG--------L--K----L-----PGPLTAQPE 200 (243)
T ss_pred -CCCCCcccHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccChhhhc--------c--C----C-----CccccCCHH
Confidence 11224579999999998888774 3468999999999998763211 0 0 0 011245689
Q ss_pred HHHHHHHHHHH
Q 010005 229 NVAHAHVCAAE 239 (520)
Q Consensus 229 Dva~ai~~~~~ 239 (520)
|++++++.+++
T Consensus 201 ~~a~~i~~~~~ 211 (243)
T PRK07102 201 EVAKDIFRAIE 211 (243)
T ss_pred HHHHHHHHHHh
Confidence 99999998887
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.5e-16 Score=150.56 Aligned_cols=218 Identities=8% Similarity=0.015 Sum_probs=149.9
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEEecCCCHHHHHHH
Q 010005 4 DEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 4 ~~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
...++|+++||||+|.||++++++|.++| ++|+++++ +... ...+.. ...++..+.+|++|.+++.++
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G-~~vv~~~~--------~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 73 (251)
T PRK12481 4 FDLNGKVAIITGCNTGLGQGMAIGLAKAG-ADIVGVGV--------AEAP-ETQAQVEALGRKFHFITADLIQQKDIDSI 73 (251)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEecC--------chHH-HHHHHHHHcCCeEEEEEeCCCCHHHHHHH
Confidence 34557899999999999999999999999 58888443 2211 000000 123577899999999988877
Q ss_pred Hc-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CC-CCEEEEeecccccccCCCC
Q 010005 82 LE-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 82 l~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~g-vkr~V~~SS~~vyg~~~~~ 142 (520)
++ +.|++||+||.. ....+++.++++|+.++..+.+++.. .+ -.++|++||...+..
T Consensus 74 ~~~~~~~~g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~---- 149 (251)
T PRK12481 74 VSQAVEVMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQG---- 149 (251)
T ss_pred HHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCC----
Confidence 75 479999999972 12356778899999999988887753 33 358999999877621
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCch--HHHHHHhcCCCceEEecC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGS 217 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~--~~l~~~~~~g~~~~i~g~ 217 (520)
......|+.+|+..+.+.+.++. .+|+++.+++||.+-.+...... +...+......
T Consensus 150 -----------~~~~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~------- 211 (251)
T PRK12481 150 -----------GIRVPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAALRADTARNEAILERI------- 211 (251)
T ss_pred -----------CCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhhcccChHHHHHHHhcC-------
Confidence 12235799999999999887655 36899999999998765322110 11111111111
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
....+...+|+|+++..++.. ......|+.+.+.++
T Consensus 212 --p~~~~~~peeva~~~~~L~s~---~~~~~~G~~i~vdgg 247 (251)
T PRK12481 212 --PASRWGTPDDLAGPAIFLSSS---ASDYVTGYTLAVDGG 247 (251)
T ss_pred --CCCCCcCHHHHHHHHHHHhCc---cccCcCCceEEECCC
Confidence 112356789999999988751 124567777777664
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-15 Score=149.86 Aligned_cols=219 Identities=11% Similarity=0.027 Sum_probs=150.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHH
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
.+++++++||||+|.||.+++++|+++| ++|+++++ +..+. ...+.+ ...++..+.+|++|.+++.++
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G-~~vv~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 77 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAG-ATIVFNDI--------NQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAM 77 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeC--------CHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 3456899999999999999999999999 58888543 32210 000011 123578899999999988877
Q ss_pred Hc-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCC
Q 010005 82 LE-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 82 l~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~ 143 (520)
++ ++|+|||+||.. ....++...+++|+.++..+.+++.. .+..++|++||.....
T Consensus 78 ~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------ 151 (265)
T PRK07097 78 VSQIEKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSEL------ 151 (265)
T ss_pred HHHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccC------
Confidence 75 379999999972 23345677888999999887777643 4567999999974321
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch--------HHHHHHhcCCCce
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--------PLLVNLAKPGWTK 212 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~--------~~l~~~~~~g~~~ 212 (520)
+..+...|+.+|+..+.+.+.++.+ .|+++++++||.+.++...... ..+...+....
T Consensus 152 ---------~~~~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~-- 220 (265)
T PRK07097 152 ---------GRETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQADGSRHPFDQFIIAKT-- 220 (265)
T ss_pred ---------CCCCCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhccccccchhHHHHHHhcC--
Confidence 1234578999999999998888654 4899999999999887432110 01111111111
Q ss_pred EEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 213 FIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 213 ~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
....+...+|+|+++..++.. ......|+.+.+.++.
T Consensus 221 -------~~~~~~~~~dva~~~~~l~~~---~~~~~~g~~~~~~gg~ 257 (265)
T PRK07097 221 -------PAARWGDPEDLAGPAVFLASD---ASNFVNGHILYVDGGI 257 (265)
T ss_pred -------CccCCcCHHHHHHHHHHHhCc---ccCCCCCCEEEECCCc
Confidence 112355689999999988762 1235577887877654
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.2e-16 Score=149.89 Aligned_cols=218 Identities=16% Similarity=0.109 Sum_probs=150.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++++|+||||+|.||++++++|.++| ++|+++++ +..+. ...+.+ ...++..+.+|+.|.+++.+++
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G-~~v~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~ 75 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREG-AKVVVADR--------DAAGGEETVALIREAGGEALFVACDVTRDAEVKALV 75 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeC--------CHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 456899999999999999999999999 58998544 32210 000000 1235788999999998888776
Q ss_pred c-------CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCC
Q 010005 83 E-------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~ 143 (520)
+ ++|+|||+|+... ...++...+++|+.++.++++++ .+.+..++|++||...++.
T Consensus 76 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~----- 150 (253)
T PRK06172 76 EQTIAAYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLGA----- 150 (253)
T ss_pred HHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhccC-----
Confidence 5 4699999998621 12356678899999998776654 3455678999999877631
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc---hHHHHHHhcCCCceEEecC
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL---VPLLVNLAKPGWTKFIIGS 217 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~---~~~l~~~~~~g~~~~i~g~ 217 (520)
..+...|+.+|+..|.+.+.++.+ .|+++.++.||.+-.+..... .+..........
T Consensus 151 ----------~~~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~------- 213 (253)
T PRK06172 151 ----------APKMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAYEADPRKAEFAAAMH------- 213 (253)
T ss_pred ----------CCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhcccChHHHHHHhccC-------
Confidence 234568999999999988877644 579999999998876543221 111111111111
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
....+...+|+++.+..++... .....|+.+.+.++.
T Consensus 214 --~~~~~~~p~~ia~~~~~l~~~~---~~~~~G~~i~~dgg~ 250 (253)
T PRK06172 214 --PVGRIGKVEEVASAVLYLCSDG---ASFTTGHALMVDGGA 250 (253)
T ss_pred --CCCCccCHHHHHHHHHHHhCcc---ccCcCCcEEEECCCc
Confidence 1123456899999999887521 245678888887764
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-15 Score=148.52 Aligned_cols=187 Identities=15% Similarity=0.116 Sum_probs=136.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHcC--
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~-- 84 (520)
|++++||||+|+||+++++.|+++| ++|+++++ +++. ..+.+ ...++.++.+|++|.+++.+++++
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G-~~V~~~~r--------~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 69 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQG-WQVIACGR--------NQSVLDELHT--QSANIFTLAFDVTDHPGTKAALSQLP 69 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCC-CEEEEEEC--------CHHHHHHHHH--hcCCCeEEEeeCCCHHHHHHHHHhcc
Confidence 3689999999999999999999999 58999544 3221 01111 123578899999999999988875
Q ss_pred --CCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCCCCCCCCCccCC
Q 010005 85 --ASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETLTCC 153 (520)
Q Consensus 85 --~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~ 153 (520)
.|.+||.|+.. ....+.+.++++|+.++.++++++... +-+++|++||..... +
T Consensus 70 ~~~d~~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~---------------~ 134 (240)
T PRK06101 70 FIPELWIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASEL---------------A 134 (240)
T ss_pred cCCCEEEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhcc---------------C
Confidence 58899998751 112234578999999999999999863 235799998865321 1
Q ss_pred CCCCChHHHHHHHHHHHHHHhc---CCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHH
Q 010005 154 WKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENV 230 (520)
Q Consensus 154 ~~p~~~Y~~sK~~~E~~~~~~~---~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dv 230 (520)
......|+.+|+..|.+.+.++ ..+|++++++||+.++++..... . . + ....+..+|+
T Consensus 135 ~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~~~~~------------~--~--~---~~~~~~~~~~ 195 (240)
T PRK06101 135 LPRAEAYGASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATPLTDKN------------T--F--A---MPMIITVEQA 195 (240)
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCCcCCC------------C--C--C---CCcccCHHHH
Confidence 1235689999999999988765 34699999999999998743210 0 0 0 0123679999
Q ss_pred HHHHHHHHH
Q 010005 231 AHAHVCAAE 239 (520)
Q Consensus 231 a~ai~~~~~ 239 (520)
++.++.+++
T Consensus 196 a~~i~~~i~ 204 (240)
T PRK06101 196 SQEIRAQLA 204 (240)
T ss_pred HHHHHHHHh
Confidence 999998887
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-15 Score=149.68 Aligned_cols=217 Identities=13% Similarity=0.058 Sum_probs=148.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++++|+||||+|+||+++++.|.++| ++|+++ .|++++ ..+...+ ...++..+.+|+.|.+++.+++
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G-~~Vi~~--------~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~ 77 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAG-AKVVLA--------SRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAV 77 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEE--------eCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHH
Confidence 456999999999999999999999999 589984 443321 0010100 1235788999999998888777
Q ss_pred c-------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHH----CC--------CCEEEEeeccccc
Q 010005 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK--------VRRLVYNSTADVV 136 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~----~g--------vkr~V~~SS~~vy 136 (520)
+ ++|+|||+++... ...+++.++++|+.++.++++++.. .. ..++|++||...+
T Consensus 78 ~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~ 157 (258)
T PRK06949 78 AHAETEAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGL 157 (258)
T ss_pred HHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECccccc
Confidence 5 5899999999621 2245677899999999999988753 11 2589999998765
Q ss_pred ccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch-HHHHHHhcCCCce
Q 010005 137 FDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-PLLVNLAKPGWTK 212 (520)
Q Consensus 137 g~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~-~~l~~~~~~g~~~ 212 (520)
. +..+..+|+.+|+..|.+++.++.+ .|++++++|||.++++...... .........-
T Consensus 158 ~---------------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~--- 219 (258)
T PRK06949 158 R---------------VLPQIGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHHHWETEQGQKLVSM--- 219 (258)
T ss_pred C---------------CCCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcchhccChHHHHHHHhc---
Confidence 2 1234568999999999988877543 5899999999999988643211 1111111110
Q ss_pred EEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 213 FIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 213 ~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
+ ....+...+|+++++..++... .....|+...+.++
T Consensus 220 -~-----~~~~~~~p~~~~~~~~~l~~~~---~~~~~G~~i~~dgg 256 (258)
T PRK06949 220 -L-----PRKRVGKPEDLDGLLLLLAADE---SQFINGAIISADDG 256 (258)
T ss_pred -C-----CCCCCcCHHHHHHHHHHHhChh---hcCCCCcEEEeCCC
Confidence 1 1123455799999999887511 23456666666543
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-15 Score=147.48 Aligned_cols=217 Identities=15% Similarity=0.115 Sum_probs=148.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++++|+||||+|+||.++++.|.++| ++|+++++ +... ..+.+.+ .......+++|+.|.+++.+++
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G-~~Vi~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 76 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQG-AHVIVSSR--------KLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALF 76 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeC--------CHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHH
Confidence 456899999999999999999999999 59999554 3210 0000100 1234678899999998877666
Q ss_pred c-------CCCEEEEcccCC--------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCC
Q 010005 83 E-------GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~ 143 (520)
+ .+|+|||+|+.. ....+++..+++|+.++.++++++ ++.+.+++|++||...+.
T Consensus 77 ~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~------ 150 (252)
T PRK07035 77 AHIRERHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVS------ 150 (252)
T ss_pred HHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcC------
Confidence 4 479999999851 122335678999999999888776 445567999999875431
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch--HHHHHHhcCCCceEEecCC
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~--~~l~~~~~~g~~~~i~g~g 218 (520)
+..+.+.|+.||+..|.+++.++.+ +|++++++.|+.+-.+...... ....+......
T Consensus 151 ---------~~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~-------- 213 (252)
T PRK07035 151 ---------PGDFQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALFKNDAILKQALAHI-------- 213 (252)
T ss_pred ---------CCCCCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCcccccccCCHHHHHHHHccC--------
Confidence 2234578999999999998887643 5899999999988765322111 11111111111
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
....+...+|+|+++..++.. ......|+.+.+.++
T Consensus 214 -~~~~~~~~~~va~~~~~l~~~---~~~~~~g~~~~~dgg 249 (252)
T PRK07035 214 -PLRRHAEPSEMAGAVLYLASD---ASSYTTGECLNVDGG 249 (252)
T ss_pred -CCCCcCCHHHHHHHHHHHhCc---cccCccCCEEEeCCC
Confidence 112355689999999987751 123457788887664
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-15 Score=146.67 Aligned_cols=215 Identities=14% Similarity=0.059 Sum_probs=146.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCC-CCCC-CCCCCC--CCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDP-SESN-SLLPDS--LSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r-~~~~-~~l~~~--~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
|++|||||+|+||++++++|+++| ++|+++ .| ++.. ...... ....++..+.+|+.|++++.++++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G-~~v~~~--------~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 71 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDG-YRVAAN--------CGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAK 71 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEE--------eCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHH
Confidence 579999999999999999999999 488873 33 2110 000000 012367899999999988777664
Q ss_pred ------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHH----HHHCCCCEEEEeecccccccCCCCCCCC
Q 010005 84 ------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 ------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~a----a~~~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|+|||+|+.. ....++...++.|+.++.++.++ +++.+.+++|++||.....
T Consensus 72 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~~~~--------- 142 (242)
T TIGR01829 72 VEAELGPIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVNGQK--------- 142 (242)
T ss_pred HHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcC---------
Confidence 479999999862 12235567789999998775544 4566778999999975431
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
+..+...|+.+|...+.+++.++. ..|++++.++|+.+.++......+..........+. ..
T Consensus 143 ------~~~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~---------~~ 207 (242)
T TIGR01829 143 ------GQFGQTNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVMAMREDVLNSIVAQIPV---------GR 207 (242)
T ss_pred ------CCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCccccccchHHHHHHHhcCCC---------CC
Confidence 112346799999988888777643 358999999999999876544334433333322221 12
Q ss_pred cccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+...+|+++++..++.. ......|+.+.+.++.
T Consensus 208 ~~~~~~~a~~~~~l~~~---~~~~~~G~~~~~~gg~ 240 (242)
T TIGR01829 208 LGRPEEIAAAVAFLASE---EAGYITGATLSINGGL 240 (242)
T ss_pred CcCHHHHHHHHHHHcCc---hhcCccCCEEEecCCc
Confidence 34578999998766541 1134678888888764
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-15 Score=145.92 Aligned_cols=222 Identities=13% Similarity=0.080 Sum_probs=149.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
.++++++||||+|.||++++++|.++| ++|++.|+... .....+.+.+ ...++..+.+|+.|++++.++++
T Consensus 6 ~~~k~~lVtG~s~gIG~~ia~~l~~~G-~~v~~~~r~~~------~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~ 78 (254)
T PRK06114 6 LDGQVAFVTGAGSGIGQRIAIGLAQAG-ADVALFDLRTD------DGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVA 78 (254)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCcc------hHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 456899999999999999999999999 59998554221 0000000001 12357789999999988877765
Q ss_pred -------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCC
Q 010005 84 -------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 -------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
+.|+|||+||.. ....+++.++++|+.++..+++++. +.+..++|++||...+...
T Consensus 79 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~------ 152 (254)
T PRK06114 79 RTEAELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIVN------ 152 (254)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCCC------
Confidence 369999999972 1234567789999999988777653 4455699999997654211
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCC-chHHHHHHhcCCCceEEecCCCcc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQ-LVPLLVNLAKPGWTKFIIGSGENM 221 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~-~~~~l~~~~~~g~~~~i~g~g~~~ 221 (520)
+..+...|+.+|+..+.+.+.++. .+|+++.+++||.+.++.... -.....+...... ..
T Consensus 153 -------~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~---------p~ 216 (254)
T PRK06114 153 -------RGLLQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTRPEMVHQTKLFEEQT---------PM 216 (254)
T ss_pred -------CCCCcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCcccccccchHHHHHHHhcC---------CC
Confidence 111246899999999988887754 368999999999998875321 1111111111111 11
Q ss_pred cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.-+..++|++.+++.++.. ......|+++.+.++.
T Consensus 217 ~r~~~~~dva~~~~~l~s~---~~~~~tG~~i~~dgg~ 251 (254)
T PRK06114 217 QRMAKVDEMVGPAVFLLSD---AASFCTGVDLLVDGGF 251 (254)
T ss_pred CCCcCHHHHHHHHHHHcCc---cccCcCCceEEECcCE
Confidence 2345689999999987751 1345678888887653
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.3e-16 Score=153.01 Aligned_cols=159 Identities=16% Similarity=0.129 Sum_probs=119.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc----
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~---- 83 (520)
||++|||||+|+||+++++.|.++| ++|++++ |+... +.. +...++..+.+|+.|.+++.++++
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G-~~V~~~~--------r~~~~--~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 68 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAG-YEVWATA--------RKAED--VEA-LAAAGFTAVQLDVNDGAALARLAEELEA 68 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCC-CEEEEEe--------CCHHH--HHH-HHHCCCeEEEeeCCCHHHHHHHHHHHHH
Confidence 3789999999999999999999999 5999844 43321 111 112346789999999988877664
Q ss_pred ---CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH---CCCCEEEEeecccccccCCCCCCCCCCCc
Q 010005 84 ---GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE---CKVRRLVYNSTADVVFDGSHDIHNGDETL 150 (520)
Q Consensus 84 ---~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~---~gvkr~V~~SS~~vyg~~~~~~~~~~E~~ 150 (520)
++|+|||+||.. ....++...+++|+.++.++++++.. .+..++|++||...+.
T Consensus 69 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~------------- 135 (274)
T PRK05693 69 EHGGLDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSGVL------------- 135 (274)
T ss_pred hcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccccC-------------
Confidence 579999999962 12245667899999999999998743 2346899999876532
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccC
Q 010005 151 TCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGP 193 (520)
Q Consensus 151 ~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp 193 (520)
+......|+.+|...|.+.+.++. .+|+++++++|+.+..+
T Consensus 136 --~~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~ 179 (274)
T PRK05693 136 --VTPFAGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQ 179 (274)
T ss_pred --CCCCccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccccc
Confidence 112346899999999988776653 36999999999999765
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.3e-15 Score=145.41 Aligned_cols=195 Identities=16% Similarity=0.065 Sum_probs=135.5
Q ss_pred CCCCCCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC------CCCCCCCCCCCcEEEEecCCC
Q 010005 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN------SLLPDSLSSGRAEYHQVDVRD 74 (520)
Q Consensus 1 m~~~~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~------~~l~~~~~~~~v~~~~~Dl~d 74 (520)
|...-.+.++|+||||+|.||++++++|+++|.++|++++ |++++ ..+.. ....+++++.+|+.|
T Consensus 1 ~~~~~~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~--------r~~~~~~~~~~~~l~~-~~~~~v~~~~~D~~~ 71 (253)
T PRK07904 1 MLDAVGNPQTILLLGGTSEIGLAICERYLKNAPARVVLAA--------LPDDPRRDAAVAQMKA-AGASSVEVIDFDALD 71 (253)
T ss_pred CccccCCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEe--------CCcchhHHHHHHHHHh-cCCCceEEEEecCCC
Confidence 4444567789999999999999999999999536899844 43321 01111 112368899999999
Q ss_pred HHHHHHHHc------CCCEEEEcccCCCC----Ccch---hhHHhhhHHHHHH----HHHHHHHCCCCEEEEeecccccc
Q 010005 75 ISQIKKVLE------GASTVFYVDATDLN----TDDF---YNCYMIIVQGAKN----VVTACRECKVRRLVYNSTADVVF 137 (520)
Q Consensus 75 ~~~l~~~l~------~~D~Vih~aa~~~~----~~~~---~~~~~~Nv~gt~~----ll~aa~~~gvkr~V~~SS~~vyg 137 (520)
.+++.+.++ +.|++||.+|.... ..++ ...+++|+.++.+ +++++++.+..++|++||...+.
T Consensus 72 ~~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~g~~ 151 (253)
T PRK07904 72 TDSHPKVIDAAFAGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVAGER 151 (253)
T ss_pred hHHHHHHHHHHHhcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechhhcC
Confidence 887655543 58999999887311 1111 2468999998876 56777777778999999986431
Q ss_pred cCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHh---cCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEE
Q 010005 138 DGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFA---NNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFI 214 (520)
Q Consensus 138 ~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~---~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i 214 (520)
+..+...|+.||+..+.+.+.+ ...+|+++++++|+.+..+... .. ..
T Consensus 152 ---------------~~~~~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~~~~--------~~--~~---- 202 (253)
T PRK07904 152 ---------------VRRSNFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTRMSA--------HA--KE---- 202 (253)
T ss_pred ---------------CCCCCcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecchhc--------cC--CC----
Confidence 1123457999999988665544 3347999999999999865211 00 00
Q ss_pred ecCCCcccccccHHHHHHHHHHHHH
Q 010005 215 IGSGENMSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~ai~~~~~ 239 (520)
. ...+..+|+|+.++.+++
T Consensus 203 ----~--~~~~~~~~~A~~i~~~~~ 221 (253)
T PRK07904 203 ----A--PLTVDKEDVAKLAVTAVA 221 (253)
T ss_pred ----C--CCCCCHHHHHHHHHHHHH
Confidence 0 123578999999998887
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=147.60 Aligned_cols=220 Identities=13% Similarity=0.076 Sum_probs=149.9
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 4 DEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 4 ~~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
.+.++++++||||+|.||++++++|.++| ++|++.|+... . .....+.. ...++..+++|+.|.+++.++++
T Consensus 6 ~~l~~k~~lItG~~~gIG~a~a~~l~~~G-~~vv~~~~~~~----~-~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~ 77 (253)
T PRK08993 6 FSLEGKVAVVTGCDTGLGQGMALGLAEAG-CDIVGINIVEP----T-ETIEQVTA--LGRRFLSLTADLRKIDGIPALLE 77 (253)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEecCcch----H-HHHHHHHh--cCCeEEEEECCCCCHHHHHHHHH
Confidence 34557899999999999999999999999 68888554221 0 00001111 12356789999999988887775
Q ss_pred -------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHC----C-CCEEEEeecccccccCCCCCC
Q 010005 84 -------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 84 -------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~----g-vkr~V~~SS~~vyg~~~~~~~ 144 (520)
++|++||+||.. ....++...+++|+.++.++++++... + -.++|++||...+...
T Consensus 78 ~~~~~~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~----- 152 (253)
T PRK08993 78 RAVAEFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGG----- 152 (253)
T ss_pred HHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCC-----
Confidence 489999999872 123467889999999999999887543 2 2589999998776311
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch--HHHHHHhcCCCceEEecCCC
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGE 219 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~--~~l~~~~~~g~~~~i~g~g~ 219 (520)
.....|+.+|+..|.+.+.++.+ +|+++..++||.+-.+...... ....+..... ++
T Consensus 153 ----------~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~~~~~~~~~~~~~~~----~p---- 214 (253)
T PRK08993 153 ----------IRVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEILDR----IP---- 214 (253)
T ss_pred ----------CCCcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchhhhccchHHHHHHHhc----CC----
Confidence 12358999999999988877654 6899999999999766422110 0111111111 11
Q ss_pred cccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
..-+.-.+|+|.++..++.. ......|+.+.+.++
T Consensus 215 -~~r~~~p~eva~~~~~l~s~---~~~~~~G~~~~~dgg 249 (253)
T PRK08993 215 -AGRWGLPSDLMGPVVFLASS---ASDYINGYTIAVDGG 249 (253)
T ss_pred -CCCCcCHHHHHHHHHHHhCc---cccCccCcEEEECCC
Confidence 11255689999999988751 123556777776554
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=149.37 Aligned_cols=220 Identities=14% Similarity=0.109 Sum_probs=150.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHH
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
+.+++++|||||+|.||+++++.|+++| ++|++.+ |+..+ ..+.+.+ ...++..+.+|++|.+++.++
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G-~~V~~~~--------r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~ 76 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAG-AQVAIAA--------RHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSM 76 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEc--------CCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHH
Confidence 4567899999999999999999999999 5899854 33221 0010111 123577889999999888777
Q ss_pred Hc-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHC----C-CCEEEEeecccccccCCCC
Q 010005 82 LE-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 82 l~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~----g-vkr~V~~SS~~vyg~~~~~ 142 (520)
++ ++|++||+||.. ....++...+++|+.++.++.+++... + -.++|++||....-..
T Consensus 77 ~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~--- 153 (253)
T PRK05867 77 LDQVTAELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIIN--- 153 (253)
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCCC---
Confidence 64 689999999872 122345667899999999999987542 2 2478999887542000
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGE 219 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~ 219 (520)
.......|+.+|+..|.+.+.++.+ +|+++.+++||.+-.+..... +..........
T Consensus 154 ----------~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~~~-~~~~~~~~~~~--------- 213 (253)
T PRK05867 154 ----------VPQQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEPY-TEYQPLWEPKI--------- 213 (253)
T ss_pred ----------CCCCccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCcccccc-hHHHHHHHhcC---------
Confidence 0112368999999999998887643 589999999999977643222 11111111111
Q ss_pred cccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
....+...+|+|+++..++.. ......|+.+.+.++.
T Consensus 214 ~~~r~~~p~~va~~~~~L~s~---~~~~~tG~~i~vdgG~ 250 (253)
T PRK05867 214 PLGRLGRPEELAGLYLYLASE---ASSYMTGSDIVIDGGY 250 (253)
T ss_pred CCCCCcCHHHHHHHHHHHcCc---ccCCcCCCeEEECCCc
Confidence 112356789999999988751 1245678888887764
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-15 Score=150.87 Aligned_cols=193 Identities=13% Similarity=0.101 Sum_probs=136.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
+++++|+||||+|.||.++++.|.++| ++|++++ |+.+. ..+.+.+ ...++..+.+|+.|.+++.+++
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G-~~Vi~~~--------R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~ 108 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRG-ATVVAVA--------RREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALV 108 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEE--------CCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 446899999999999999999999999 5999854 43221 0000100 1234678999999999888877
Q ss_pred c-------CCCEEEEcccCCCC---------CcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCC
Q 010005 83 E-------GASTVFYVDATDLN---------TDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~~~---------~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~ 142 (520)
+ ++|+|||+||.... ..+.+..+++|+.|+.++++++. +.+..++|++||.++++.
T Consensus 109 ~~~~~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~---- 184 (293)
T PRK05866 109 ADVEKRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSE---- 184 (293)
T ss_pred HHHHHHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCC----
Confidence 6 68999999987211 12345688999999888877654 566779999999766421
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGE 219 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~ 219 (520)
+....+.|+.+|+..+.+.+.++. .+|+++++++||.+-.+.... .. . .++
T Consensus 185 ----------~~p~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~~~~~-----------~~--~--~~~- 238 (293)
T PRK05866 185 ----------ASPLFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPMIAP-----------TK--A--YDG- 238 (293)
T ss_pred ----------CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCccccc-----------cc--c--ccC-
Confidence 012246899999999988777643 368999999999776553211 00 0 011
Q ss_pred cccccccHHHHHHHHHHHHH
Q 010005 220 NMSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~ 239 (520)
...+..+++|+.++.+++
T Consensus 239 --~~~~~pe~vA~~~~~~~~ 256 (293)
T PRK05866 239 --LPALTADEAAEWMVTAAR 256 (293)
T ss_pred --CCCCCHHHHHHHHHHHHh
Confidence 124578999999998887
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-15 Score=148.03 Aligned_cols=230 Identities=11% Similarity=0.077 Sum_probs=151.7
Q ss_pred CCCCCCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHH
Q 010005 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 1 m~~~~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (520)
|.....+++++|||||+|.||+++++.|.++| ++|++.|+.... +. .....+.. ....++..+.+|++|.+++.+
T Consensus 1 ~~~~~l~~k~~lItGas~gIG~aia~~l~~~G-~~V~~~~r~~~~-~~--~~~~~~~~-~~~~~~~~~~~Dv~~~~~i~~ 75 (263)
T PRK08339 1 MLKIDLSGKLAFTTASSKGIGFGVARVLARAG-ADVILLSRNEEN-LK--KAREKIKS-ESNVDVSYIVADLTKREDLER 75 (263)
T ss_pred CCccCCCCCEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEeCCHHH-HH--HHHHHHHh-hcCCceEEEEecCCCHHHHHH
Confidence 43334567899999999999999999999999 599985543210 00 00000100 012467889999999998887
Q ss_pred HHc------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCC
Q 010005 81 VLE------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 81 ~l~------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~ 143 (520)
+++ ++|++||+||.. .+..++...+++|+.+...+.+++ ++.+..++|++||...+.
T Consensus 76 ~~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~------ 149 (263)
T PRK08339 76 TVKELKNIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKE------ 149 (263)
T ss_pred HHHHHHhhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccC------
Confidence 775 489999999862 223556778899988776665554 455667999999987641
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc-----------hHHHHHHhcCC
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL-----------VPLLVNLAKPG 209 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~-----------~~~l~~~~~~g 209 (520)
+......|+.+|+..+.+.+.++.+ +|+++.++.||.+-.+..... .+...+.....
T Consensus 150 ---------~~~~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (263)
T PRK08339 150 ---------PIPNIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTDRVIQLAQDRAKREGKSVEEALQEYAKP 220 (263)
T ss_pred ---------CCCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccHHHHHHHHhhhhccCCCHHHHHHHHhcc
Confidence 1122457999999999887776543 689999999999865521100 01111111111
Q ss_pred CceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC
Q 010005 210 WTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (520)
Q Consensus 210 ~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t 262 (520)
.+...+...+|+|+++..++.. ......|+.+.+.++...+
T Consensus 221 ---------~p~~r~~~p~dva~~v~fL~s~---~~~~itG~~~~vdgG~~~~ 261 (263)
T PRK08339 221 ---------IPLGRLGEPEEIGYLVAFLASD---LGSYINGAMIPVDGGRLNS 261 (263)
T ss_pred ---------CCcccCcCHHHHHHHHHHHhcc---hhcCccCceEEECCCcccc
Confidence 1122356689999999988751 1235678888887765443
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-15 Score=150.09 Aligned_cols=222 Identities=17% Similarity=0.127 Sum_probs=147.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
..+++++|||||+|.||+++++.|+++| ++|+++++ ++......+.+ ...++..+.+|+.|.+++.+++
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G-~~vi~~~r--------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 73 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEG-AYVLAVDI--------AEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFA 73 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeC--------cHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHH
Confidence 3467899999999999999999999999 69998543 31100011111 1235788999999998887666
Q ss_pred c-------CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCC
Q 010005 83 E-------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~ 143 (520)
+ ++|++||+||... ....++..+++|+.++..+.+++. +.+ .++|++||...+.
T Consensus 74 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~------ 146 (272)
T PRK08589 74 SEIKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG-GSIINTSSFSGQA------ 146 (272)
T ss_pred HHHHHHcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEeCchhhcC------
Confidence 4 4799999998721 112346678899999977777654 344 6999999987652
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchH----HHHHHhcCCCceEEec
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVP----LLVNLAKPGWTKFIIG 216 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~----~l~~~~~~g~~~~i~g 216 (520)
+......|+.+|+..+.+++.++. ..|+++.++.||.+..+....... ........... .
T Consensus 147 ---------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~-~--- 213 (272)
T PRK08589 147 ---------ADLYRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKLTGTSEDEAGKTFRENQK-W--- 213 (272)
T ss_pred ---------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhhcccchhhHHHHHhhhhh-c---
Confidence 112346899999999999888754 358999999999998664221100 00000000000 0
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
......+..++|+++++..++.. ......|+.+.+.++.
T Consensus 214 -~~~~~~~~~~~~va~~~~~l~s~---~~~~~~G~~i~vdgg~ 252 (272)
T PRK08589 214 -MTPLGRLGKPEEVAKLVVFLASD---DSSFITGETIRIDGGV 252 (272)
T ss_pred -cCCCCCCcCHHHHHHHHHHHcCc---hhcCcCCCEEEECCCc
Confidence 01122356799999999987752 1245678888887754
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-15 Score=147.29 Aligned_cols=217 Identities=13% Similarity=0.052 Sum_probs=140.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHHc-
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
+|+|+||||+|+||+++++.|+++| ++|++.+ .|++.. ......+ ...++..+.+|+.|.+++.++++
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g-~~v~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARG-WSVGINY-------ARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDA 73 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEe-------CCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHH
Confidence 5799999999999999999999999 5776632 222110 0000000 12357889999999988776654
Q ss_pred ------CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHHHHC-CC------CEEEEeecccccccCCCC
Q 010005 84 ------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC-KV------RRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 84 ------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa~~~-gv------kr~V~~SS~~vyg~~~~~ 142 (520)
.+|+|||+||... ...+++..+++|+.++.++++++.+. .. .++|++||...+..
T Consensus 74 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~---- 149 (248)
T PRK06947 74 VQSAFGRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLG---- 149 (248)
T ss_pred HHHhcCCCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCC----
Confidence 5899999998621 11234567899999998887654432 21 36999999765311
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCC-chHHHHHHhcCCCceEEecCC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-LVPLLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~-~~~~l~~~~~~g~~~~i~g~g 218 (520)
.......|+.+|...+.+++.++.+ .|++++++||+.+..|.... -.+..........
T Consensus 150 ----------~~~~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~-------- 211 (248)
T PRK06947 150 ----------SPNEYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAQT-------- 211 (248)
T ss_pred ----------CCCCCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCcccccccccCCHHHHHHHhhcC--------
Confidence 0011246999999999888777654 48999999999998874321 1111111111111
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
...-...++|++++++.++... .....|+.+.+.++
T Consensus 212 -~~~~~~~~e~va~~~~~l~~~~---~~~~~G~~~~~~gg 247 (248)
T PRK06947 212 -PLGRAGEADEVAETIVWLLSDA---ASYVTGALLDVGGG 247 (248)
T ss_pred -CCCCCcCHHHHHHHHHHHcCcc---ccCcCCceEeeCCC
Confidence 0111346899999999887621 13456777776553
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.8e-15 Score=144.87 Aligned_cols=213 Identities=14% Similarity=0.067 Sum_probs=147.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++++++||||+|.||+++++.|+++| ++|++.|+ +.... ...++..+.+|++|++++.++++
T Consensus 7 l~~k~vlItG~s~gIG~~la~~l~~~G-~~v~~~~~--------~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~~ 71 (266)
T PRK06171 7 LQGKIIIVTGGSSGIGLAIVKELLANG-ANVVNADI--------HGGDG------QHENYQFVPTDVSSAEEVNHTVAEI 71 (266)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeC--------Ccccc------ccCceEEEEccCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 58888544 32210 12357889999999988887765
Q ss_pred -----CCCEEEEcccCCC----------------CCcchhhHHhhhHHHHHHHHHHHHHC----CCCEEEEeeccccccc
Q 010005 84 -----GASTVFYVDATDL----------------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFD 138 (520)
Q Consensus 84 -----~~D~Vih~aa~~~----------------~~~~~~~~~~~Nv~gt~~ll~aa~~~----gvkr~V~~SS~~vyg~ 138 (520)
.+|+|||+||... ...+++..+++|+.++.++++++... +-.++|++||...+.
T Consensus 72 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~- 150 (266)
T PRK06171 72 IEKFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLE- 150 (266)
T ss_pred HHHcCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccC-
Confidence 4799999998621 12344668999999999999988753 345899999987642
Q ss_pred CCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCcccc-CCCCCch------------HHH
Q 010005 139 GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFG-PGDTQLV------------PLL 202 (520)
Q Consensus 139 ~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyG-p~~~~~~------------~~l 202 (520)
+......|+.+|+..+.+++.++.+ +|+++.+++|+.+-. +...... ..+
T Consensus 151 --------------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~~t~~~~~~~~~~~~~~~~~~~~~~ 216 (266)
T PRK06171 151 --------------GSEGQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILEATGLRTPEYEEALAYTRGITVEQL 216 (266)
T ss_pred --------------CCCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccccCCCcChhhhhhhccccCCCHHHH
Confidence 1123568999999999998877643 689999999998742 2111000 111
Q ss_pred HHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 203 VNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 203 ~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
....... +......+...+|+|.++..++.. ......|+..++.++
T Consensus 217 ~~~~~~~-------~~~p~~r~~~~~eva~~~~fl~s~---~~~~itG~~i~vdgg 262 (266)
T PRK06171 217 RAGYTKT-------STIPLGRSGKLSEVADLVCYLLSD---RASYITGVTTNIAGG 262 (266)
T ss_pred Hhhhccc-------ccccCCCCCCHHHhhhheeeeecc---ccccceeeEEEecCc
Confidence 1111110 011223456789999999987751 123467788887665
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-15 Score=148.96 Aligned_cols=221 Identities=16% Similarity=0.178 Sum_probs=148.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++++|+||||+|.||++++++|+++| ++|+++|+.... +... ...+.. ...++.++.+|++|.+++.++++
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G-~~V~~~~r~~~~-~~~~--~~~~~~--~~~~~~~~~~Dv~~~~~i~~~~~~~ 80 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAG-ANVAVASRSQEK-VDAA--VAQLQQ--AGPEGLGVSADVRDYAAVEAAFAQI 80 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHH-HHHH--HHHHHH--hCCceEEEECCCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 589995543210 0000 000111 12346788999999988887765
Q ss_pred -----CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHHHC---CCCEEEEeecccccccCCCCCCCCCC
Q 010005 84 -----GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 -----~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~~~---gvkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
++|+|||+|+. .....++...+++|+.++.++++++... .-.++|++||...+.
T Consensus 81 ~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~----------- 149 (264)
T PRK07576 81 ADEFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFV----------- 149 (264)
T ss_pred HHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhcc-----------
Confidence 36999999975 1223455678899999999999988643 125899999976541
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCC-CCCchHH-HH-HHhcCCCceEEecCCCccc
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPG-DTQLVPL-LV-NLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~-~~~~~~~-l~-~~~~~g~~~~i~g~g~~~~ 222 (520)
+......|+.+|...|.+++.++.+ .|+++++++|+.+.+.. .....+. .. ...... ....
T Consensus 150 ----~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t~~~~~~~~~~~~~~~~~~~---------~~~~ 216 (264)
T PRK07576 150 ----PMPMQAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAGTEGMARLAPSPELQAAVAQS---------VPLK 216 (264)
T ss_pred ----CCCCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccCcHHHhhcccCHHHHHHHHhc---------CCCC
Confidence 1234568999999999998877543 58999999999887532 1111110 00 011110 1123
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.+...+|+|+++..++... .....|+.+.+.++.
T Consensus 217 ~~~~~~dva~~~~~l~~~~---~~~~~G~~~~~~gg~ 250 (264)
T PRK07576 217 RNGTKQDIANAALFLASDM---ASYITGVVLPVDGGW 250 (264)
T ss_pred CCCCHHHHHHHHHHHcChh---hcCccCCEEEECCCc
Confidence 4567899999999888621 134567777777754
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-15 Score=147.05 Aligned_cols=160 Identities=17% Similarity=0.102 Sum_probs=119.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc----
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~---- 83 (520)
||+|+||||+|+||++++++|+++| ++|+++++ +..+. +.. ....++.++.+|+.|.+++.++++
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G-~~v~~~~r--------~~~~~-~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 69 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPG-IAVLGVAR--------SRHPS-LAA-AAGERLAEVELDLSDAAAAAAWLAGDLL 69 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCC-CEEEEEec--------Ccchh-hhh-ccCCeEEEEEeccCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999 58988543 32211 111 112467889999999988877442
Q ss_pred -------CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCC
Q 010005 84 -------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 84 -------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
+.|++||+|+... ...++...+++|+.++..+.+++.+ .+.+++|++||...+.
T Consensus 70 ~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~------- 142 (243)
T PRK07023 70 AAFVDGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARN------- 142 (243)
T ss_pred HHhccCCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcC-------
Confidence 3689999998721 1234567889999997776666543 4457999999987652
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC--CCceEEEEecCccccC
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI--DGLLTCALRPSNVFGP 193 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~--~gi~~~ilRp~~vyGp 193 (520)
+..+...|+.+|...|.+++.++.+ .|+++.+++|+.+-.+
T Consensus 143 --------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg~~~t~ 185 (243)
T PRK07023 143 --------AYAGWSVYCATKAALDHHARAVALDANRALRIVSLAPGVVDTG 185 (243)
T ss_pred --------CCCCchHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCccccH
Confidence 2234678999999999999987643 6899999999987543
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.6e-15 Score=143.83 Aligned_cols=216 Identities=14% Similarity=0.129 Sum_probs=146.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHHc-
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
+|+++||||+|.||+++++.|.++| ++|+++++.. .. ....+.+ ...++..+.+|++|++++.++++
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G-~~Vi~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 71 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEG-ANVVITGRTK--------EKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQ 71 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 3789999999999999999999999 5999855432 10 0010001 12467889999999988877664
Q ss_pred ------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CC-CCEEEEeecccccccCCCCCCC
Q 010005 84 ------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 ------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~g-vkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|+|||+||.. .+..+++.++++|+.++.++++++.+ .+ ..++|++||...+.
T Consensus 72 ~~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~-------- 143 (252)
T PRK07677 72 IDEKFGRIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWD-------- 143 (252)
T ss_pred HHHHhCCccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhcc--------
Confidence 479999999851 12234577899999999999999843 22 35899999875431
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhc----CCCCceEEEEecCccccCCC-CCc--hHHHHHHhcCCCceEEecCC
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFAN----NIDGLLTCALRPSNVFGPGD-TQL--VPLLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~----~~~gi~~~ilRp~~vyGp~~-~~~--~~~l~~~~~~g~~~~i~g~g 218 (520)
+......|+.+|+..+.+.+.++ +.+|+++.+++||.+.+++. ... -+...+.+.+..+
T Consensus 144 -------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~~~~~~~~~~~~~~~~------- 209 (252)
T PRK07677 144 -------AGPGVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWESEEAAKRTIQSVP------- 209 (252)
T ss_pred -------CCCCCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccccccCCHHHHHHHhccCC-------
Confidence 11234579999999998887643 33589999999999985431 111 1222222222111
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
...+...+|+++++..++.. ......|+.+.+.++.
T Consensus 210 --~~~~~~~~~va~~~~~l~~~---~~~~~~g~~~~~~gg~ 245 (252)
T PRK07677 210 --LGRLGTPEEIAGLAYFLLSD---EAAYINGTCITMDGGQ 245 (252)
T ss_pred --CCCCCCHHHHHHHHHHHcCc---cccccCCCEEEECCCe
Confidence 12356789999988877651 1235677888887754
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-15 Score=165.48 Aligned_cols=231 Identities=19% Similarity=0.200 Sum_probs=150.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++++||||||+|+||++++++|.++| ++|+++|+.... ... ....+........+..+.+|++|.+++.++++
T Consensus 412 l~gkvvLVTGasggIG~aiA~~La~~G-a~Vvi~~r~~~~-~~~--~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i 487 (676)
T TIGR02632 412 LARRVAFVTGGAGGIGRETARRLAAEG-AHVVLADLNLEA-AEA--VAAEINGQFGAGRAVALKMDVTDEQAVKAAFADV 487 (676)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCC-CEEEEEeCCHHH-HHH--HHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 346899999999999999999999999 599996653210 000 00001000112346788999999998888776
Q ss_pred -----CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHH----HHCC-CCEEEEeecccccccCCCCCCCC
Q 010005 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECK-VRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa----~~~g-vkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|+|||+||... ...++...+++|+.+...+.+++ ++.+ -.++|++||...+.
T Consensus 488 ~~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~--------- 558 (676)
T TIGR02632 488 ALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVY--------- 558 (676)
T ss_pred HHhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcC---------
Confidence 6899999999721 12345677889998887765444 3444 25899999976542
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccc-cCCC--CCchHHHHHHhcCCCce----EEec
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVF-GPGD--TQLVPLLVNLAKPGWTK----FIIG 216 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vy-Gp~~--~~~~~~l~~~~~~g~~~----~i~g 216 (520)
+......|+.+|+..|.+++.++.+ .|+++.+++|+.++ |.+. ...... .....+... ....
T Consensus 559 ------~~~~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 630 (676)
T TIGR02632 559 ------AGKNASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGIWDGEWREE--RAAAYGIPADELEEHYA 630 (676)
T ss_pred ------CCCCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCceecCcccccccchhh--hhhcccCChHHHHHHHH
Confidence 1123578999999999999887553 58999999999887 3321 111000 000000000 0011
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
.......+++.+|+|+++..++.. ......|+++++.++..
T Consensus 631 ~r~~l~r~v~peDVA~av~~L~s~---~~~~~TG~~i~vDGG~~ 671 (676)
T TIGR02632 631 KRTLLKRHIFPADIAEAVFFLASS---KSEKTTGCIITVDGGVP 671 (676)
T ss_pred hcCCcCCCcCHHHHHHHHHHHhCC---cccCCcCcEEEECCCch
Confidence 223445678999999999988751 12356688999987653
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.7e-15 Score=145.17 Aligned_cols=221 Identities=18% Similarity=0.129 Sum_probs=148.3
Q ss_pred CCCeEEEEcCCC-hhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 7 IPRTCVVLNGRG-FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 7 ~~~~ILVtGatG-fIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
++++++||||+| -||+++++.|.++| ++|++.|+.... +. .....+.+.....++..+.+|++|.+++.++++
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G-~~V~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 91 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEG-ARVVISDIHERR-LG--ETADELAAELGLGRVEAVVCDVTSEAQVDALIDAA 91 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcC-CEEEEEeCCHHH-HH--HHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence 468999999998 59999999999999 588885543210 00 000001110112357789999999988877764
Q ss_pred -----CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CC-CCEEEEeecccccccCCCCCCCC
Q 010005 84 -----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 -----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~g-vkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|+|||+||.. ....++...+++|+.++.++++++.. .+ -.++|++||...+-
T Consensus 92 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~--------- 162 (262)
T PRK07831 92 VERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWR--------- 162 (262)
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcC---------
Confidence 479999999962 12235667788999999998888754 22 35788888865431
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc-hHHHHHHhcCCCceEEecCCCccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL-VPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~-~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
+..+...|+.+|+..|.+.+.++.+ +|+++.+++|+.+..|..... -+...+......+ ..
T Consensus 163 ------~~~~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~~~~~~~~~~~~~~~---------~~ 227 (262)
T PRK07831 163 ------AQHGQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAKVTSAELLDELAAREA---------FG 227 (262)
T ss_pred ------CCCCCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCcccccccCHHHHHHHHhcCC---------CC
Confidence 1234568999999999999887643 689999999999988753221 1222222222221 12
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
-+...+|+|++++.++... .....|+.+.+.++
T Consensus 228 r~~~p~~va~~~~~l~s~~---~~~itG~~i~v~~~ 260 (262)
T PRK07831 228 RAAEPWEVANVIAFLASDY---SSYLTGEVVSVSSQ 260 (262)
T ss_pred CCcCHHHHHHHHHHHcCch---hcCcCCceEEeCCC
Confidence 3455899999999877511 23467777777653
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-15 Score=145.21 Aligned_cols=209 Identities=13% Similarity=0.100 Sum_probs=137.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC--CCCCCcEEEEecCCCHHHHHHHHcCC-
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLEGA- 85 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~--~~~~~v~~~~~Dl~d~~~l~~~l~~~- 85 (520)
|+|+||||+|+||++++++|.++| ++|+++++ .+.+ .+... ....++.++.+|++|.+++.++++.+
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g-~~V~~~~r--------~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 71 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKG-THVISISR--------TENK-ELTKLAEQYNSNLTFHSLDLQDVHELETNFNEIL 71 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcC-CEEEEEeC--------CchH-HHHHHHhccCCceEEEEecCCCHHHHHHHHHHHH
Confidence 689999999999999999999999 59998543 3210 01110 01346788999999999888777532
Q ss_pred ----------CEEEEcccCC--------CCCcchhhHHhhhHHHHHHHHHHH----HHCC-CCEEEEeecccccccCCCC
Q 010005 86 ----------STVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTAC----RECK-VRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 86 ----------D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~g-vkr~V~~SS~~vyg~~~~~ 142 (520)
+.+||+||.. ....++...+++|+.++..+++++ ++.+ .+++|++||...+.
T Consensus 72 ~~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~----- 146 (251)
T PRK06924 72 SSIQEDNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKN----- 146 (251)
T ss_pred HhcCcccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcC-----
Confidence 2789998862 122445667888999866666554 3433 46899999976531
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC-----CCceEEEEecCccccCCCCC-------chHHHHHHhcCCC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI-----DGLLTCALRPSNVFGPGDTQ-------LVPLLVNLAKPGW 210 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~gi~~~ilRp~~vyGp~~~~-------~~~~l~~~~~~g~ 210 (520)
+..+...|+.+|+..|.+++.++.+ .++++.+++|+.+-.+.... ..+. .+....
T Consensus 147 ----------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~-~~~~~~-- 213 (251)
T PRK06924 147 ----------PYFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSSKEDFTN-LDRFIT-- 213 (251)
T ss_pred ----------CCCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHHHHhcCcccchH-HHHHHH--
Confidence 2345678999999999998877533 47999999999876543110 0000 000000
Q ss_pred ceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEe
Q 010005 211 TKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFIT 256 (520)
Q Consensus 211 ~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~ 256 (520)
... ...+..++|+|++++.++.. .....|+.+.+.
T Consensus 214 ---~~~----~~~~~~~~dva~~~~~l~~~----~~~~~G~~~~v~ 248 (251)
T PRK06924 214 ---LKE----EGKLLSPEYVAKALRNLLET----EDFPNGEVIDID 248 (251)
T ss_pred ---Hhh----cCCcCCHHHHHHHHHHHHhc----ccCCCCCEeehh
Confidence 000 11257799999999998872 134456655443
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-14 Score=147.86 Aligned_cols=198 Identities=11% Similarity=0.025 Sum_probs=137.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++++|+||||+|.||+++++.|.++| ++|++++ |+++.. .+.+.+ ...++..+.+|+.|.+++.+++
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G-~~Vvl~~--------R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~ 75 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRG-ARLVLAA--------RDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALA 75 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCC-CEEEEEE--------CCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHH
Confidence 456899999999999999999999999 5898844 433210 000111 1235678899999999888776
Q ss_pred c-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCC
Q 010005 83 E-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
+ ++|++||+||.. ....+++..+++|+.++.++.+++ ++.+..++|++||...+.
T Consensus 76 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~------- 148 (330)
T PRK06139 76 TQAASFGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFA------- 148 (330)
T ss_pred HHHHHhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcC-------
Confidence 4 579999999861 122345668999999999988776 344556899999987652
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHh----cCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCc
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFA----NNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~----~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~ 220 (520)
+......|+.||+..+.+.+.+ .+..|+.++++.|+.+.+|....... . .+.. ...
T Consensus 149 --------~~p~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~~~-----~-~~~~------~~~ 208 (330)
T PRK06139 149 --------AQPYAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHGAN-----Y-TGRR------LTP 208 (330)
T ss_pred --------CCCCchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCcccccccc-----c-cccc------ccC
Confidence 1123468999999765555444 33248999999999998875321100 0 0100 011
Q ss_pred ccccccHHHHHHHHHHHHH
Q 010005 221 MSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~ 239 (520)
...+...+|+|++++.+++
T Consensus 209 ~~~~~~pe~vA~~il~~~~ 227 (330)
T PRK06139 209 PPPVYDPRRVAKAVVRLAD 227 (330)
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 2346789999999999887
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-14 Score=136.84 Aligned_cols=185 Identities=19% Similarity=0.147 Sum_probs=135.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---CC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---GA 85 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~---~~ 85 (520)
|+++||||+|.||.++++.|.++ ++|++ ..|+.. .+.+|++|.++++++++ ++
T Consensus 1 ~~vlItGas~giG~~la~~l~~~--~~vi~--------~~r~~~--------------~~~~D~~~~~~~~~~~~~~~~i 56 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR--HEVIT--------AGRSSG--------------DVQVDITDPASIRALFEKVGKV 56 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc--CcEEE--------EecCCC--------------ceEecCCChHHHHHHHHhcCCC
Confidence 58999999999999999999988 48888 444321 46899999999888876 58
Q ss_pred CEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCCCCCCCCCccCCCCC
Q 010005 86 STVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF 156 (520)
Q Consensus 86 D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p 156 (520)
|+|||+||.. ....++...+++|+.++.++.+++... +..+++++||..... +...
T Consensus 57 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~~---------------~~~~ 121 (199)
T PRK07578 57 DAVVSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSDE---------------PIPG 121 (199)
T ss_pred CEEEECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCC---------------CCCC
Confidence 9999999861 223456778899999999999988653 235799999865421 2233
Q ss_pred CChHHHHHHHHHHHHHHhcC--CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHH
Q 010005 157 QDLMCDLKAQAEALVLFANN--IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234 (520)
Q Consensus 157 ~~~Y~~sK~~~E~~~~~~~~--~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai 234 (520)
...|+.+|+..+.+.+.++. ..|+++..+.|+.+-.+.. .. +. ..++ ..++..+|+|+++
T Consensus 122 ~~~Y~~sK~a~~~~~~~la~e~~~gi~v~~i~Pg~v~t~~~-----~~------~~--~~~~-----~~~~~~~~~a~~~ 183 (199)
T PRK07578 122 GASAATVNGALEGFVKAAALELPRGIRINVVSPTVLTESLE-----KY------GP--FFPG-----FEPVPAARVALAY 183 (199)
T ss_pred chHHHHHHHHHHHHHHHHHHHccCCeEEEEEcCCcccCchh-----hh------hh--cCCC-----CCCCCHHHHHHHH
Confidence 56899999999998887655 3689999999998743311 00 00 0111 2357899999999
Q ss_pred HHHHHhhhcccccCCCceEEEe
Q 010005 235 VCAAEALDSRMVSVAGMAFFIT 256 (520)
Q Consensus 235 ~~~~~~~~~~~~~~~g~~yni~ 256 (520)
..+++ ....|++|+++
T Consensus 184 ~~~~~------~~~~g~~~~~~ 199 (199)
T PRK07578 184 VRSVE------GAQTGEVYKVG 199 (199)
T ss_pred HHHhc------cceeeEEeccC
Confidence 88887 34667777653
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-14 Score=142.86 Aligned_cols=201 Identities=18% Similarity=0.117 Sum_probs=136.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCC---CCC--CCCCcEEEEecCCCHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLP---DSL--SSGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~---~~~--~~~~v~~~~~Dl~d~~~l~~ 80 (520)
+++++++||||+|+||+++++.|.++| ++|+++++.... .+. ....+. +.+ ...++..+.+|++|.+++.+
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~--~~~-~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~ 79 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDG-ANIVIAAKTAEP--HPK-LPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAA 79 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeccccc--ccc-hhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHH
Confidence 456899999999999999999999999 599985543210 000 000000 000 12357788999999998887
Q ss_pred HHc-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHC----CCCEEEEeecccccccCCCC
Q 010005 81 VLE-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 81 ~l~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~----gvkr~V~~SS~~vyg~~~~~ 142 (520)
+++ ++|+|||+||.. ....+++..+++|+.++.++++++... +-.++|++||.... .
T Consensus 80 ~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~--~--- 154 (273)
T PRK08278 80 AVAKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNL--D--- 154 (273)
T ss_pred HHHHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhc--c---
Confidence 765 589999999972 122345678899999999999999642 33578888875321 0
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCc-cccCCCCCchHHHHHHhcCCCceEEecCC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSN-VFGPGDTQLVPLLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~-vyGp~~~~~~~~l~~~~~~g~~~~i~g~g 218 (520)
.. ...+.+.|+.+|+..|.+++.++.+ ++++++++.|+. +-.+. .+....+.
T Consensus 155 ------~~--~~~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~~i~t~~--------~~~~~~~~-------- 210 (273)
T PRK08278 155 ------PK--WFAPHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRTTIATAA--------VRNLLGGD-------- 210 (273)
T ss_pred ------cc--ccCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCccccHH--------HHhccccc--------
Confidence 00 1145678999999999999887654 489999999984 32221 11111111
Q ss_pred CcccccccHHHHHHHHHHHHH
Q 010005 219 ENMSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~ 239 (520)
.....+.-.+|+|++++.++.
T Consensus 211 ~~~~~~~~p~~va~~~~~l~~ 231 (273)
T PRK08278 211 EAMRRSRTPEIMADAAYEILS 231 (273)
T ss_pred ccccccCCHHHHHHHHHHHhc
Confidence 112245678999999998876
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-14 Score=140.61 Aligned_cols=193 Identities=13% Similarity=0.052 Sum_probs=132.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCC---CCCCCcEEEEecCCC--HHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDS---LSSGRAEYHQVDVRD--ISQIK 79 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~---~~~~~v~~~~~Dl~d--~~~l~ 79 (520)
+++++++||||+|+||+++++.|+++| ++|+++++ ++... ...+. ........+.+|+.| .+++.
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g-~~V~~~~r--------~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~ 74 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAG-ATVILVAR--------HQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFE 74 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcC-CEEEEEeC--------ChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHH
Confidence 456899999999999999999999999 58999544 33210 00000 012245678899975 33343
Q ss_pred HHH--------cCCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccC
Q 010005 80 KVL--------EGASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDG 139 (520)
Q Consensus 80 ~~l--------~~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~ 139 (520)
+++ .++|+|||+||... ...++...+++|+.++.++++++.. .+..++|++||....-
T Consensus 75 ~~~~~i~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~-- 152 (239)
T PRK08703 75 QFAATIAEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGET-- 152 (239)
T ss_pred HHHHHHHHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEecccccc--
Confidence 332 35799999999621 1234456789999999998888754 3456899999864320
Q ss_pred CCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCCC----CceEEEEecCccccCCCCCchHHHHHHhcCCCceEEe
Q 010005 140 SHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID----GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFII 215 (520)
Q Consensus 140 ~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~ 215 (520)
+......|+.+|+..|.+++.++.+. ++++++++||.+++|...... +
T Consensus 153 -------------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~~~~~---------------~ 204 (239)
T PRK08703 153 -------------PKAYWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKSH---------------P 204 (239)
T ss_pred -------------CCCCccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCccccccC---------------C
Confidence 22345689999999999988776542 699999999999988532110 0
Q ss_pred cCCCcccccccHHHHHHHHHHHHH
Q 010005 216 GSGENMSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 216 g~g~~~~~~i~v~Dva~ai~~~~~ 239 (520)
+.....+...+|++.++..++.
T Consensus 205 --~~~~~~~~~~~~~~~~~~~~~~ 226 (239)
T PRK08703 205 --GEAKSERKSYGDVLPAFVWWAS 226 (239)
T ss_pred --CCCccccCCHHHHHHHHHHHhC
Confidence 1111234578999999998886
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-14 Score=141.22 Aligned_cols=229 Identities=15% Similarity=0.061 Sum_probs=148.3
Q ss_pred CCCCCCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHH
Q 010005 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 1 m~~~~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (520)
|+....++++++||||+|.||+++++.|+++| ++|+++++.... +. .....+.+.....++..+.+|++|.+++.+
T Consensus 1 m~~~~l~~k~~lItGas~giG~~ia~~l~~~G-~~V~~~~r~~~~-~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 76 (265)
T PRK07062 1 MMQIQLEGRVAVVTGGSSGIGLATVELLLEAG-ASVAICGRDEER-LA--SAEARLREKFPGARLLAARCDVLDEADVAA 76 (265)
T ss_pred CCccccCCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCHHH-HH--HHHHHHHhhCCCceEEEEEecCCCHHHHHH
Confidence 44455667899999999999999999999999 589985443210 00 000011111112357789999999988876
Q ss_pred HHc-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCC
Q 010005 81 VLE-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 81 ~l~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~ 142 (520)
+++ ++|++||+||.. ....++...+++|+.+..++.+++ ++.+..++|++||...+.
T Consensus 77 ~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----- 151 (265)
T PRK07062 77 FAAAVEARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQ----- 151 (265)
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccC-----
Confidence 654 479999999862 122356677888988877766655 444556999999987642
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCch----------HHHHHHhcCC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV----------PLLVNLAKPG 209 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~----------~~l~~~~~~g 209 (520)
+......|+.+|+..+.+.+.++. +.|+++++++|+.+-.+...... ..+.+.....
T Consensus 152 ----------~~~~~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (265)
T PRK07062 152 ----------PEPHMVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQWRRRYEARADPGQSWEAWTAALARK 221 (265)
T ss_pred ----------CCCCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccchhhhHHHHhhccCCChHHHHHHHhhc
Confidence 112346799999998887776543 36899999999998765321111 1111111000
Q ss_pred CceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 210 WTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 210 ~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
.+.....+...+|+|+++..++.. ......|+.+.+.++
T Consensus 222 -------~~~p~~r~~~p~~va~~~~~L~s~---~~~~~tG~~i~vdgg 260 (265)
T PRK07062 222 -------KGIPLGRLGRPDEAARALFFLASP---LSSYTTGSHIDVSGG 260 (265)
T ss_pred -------CCCCcCCCCCHHHHHHHHHHHhCc---hhcccccceEEEcCc
Confidence 011122356689999999987751 123567888888765
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-14 Score=142.24 Aligned_cols=219 Identities=14% Similarity=0.121 Sum_probs=144.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC--CCCCCCC--CCCCcEEEEecCCCHHHHHH
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN--SLLPDSL--SSGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~--~~l~~~~--~~~~v~~~~~Dl~d~~~l~~ 80 (520)
..++++++||||+|.||+++++.|.++| +.|++. .|+... ....+.+ ...++..+.+|++|.+++.+
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G-~~vvi~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~ 74 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEK-AKVVIN--------YRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVN 74 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEE--------eCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHH
Confidence 4567999999999999999999999999 577773 332110 0000111 12356788999999998877
Q ss_pred HHc-------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHH----HHHHCC-CCEEEEeecccccccCCC
Q 010005 81 VLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVT----ACRECK-VRRLVYNSTADVVFDGSH 141 (520)
Q Consensus 81 ~l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~----aa~~~g-vkr~V~~SS~~vyg~~~~ 141 (520)
+++ ++|++||+|+... ...+++..+++|+.++.++.+ .+++.+ -.++|++||...+.
T Consensus 75 ~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~---- 150 (261)
T PRK08936 75 LIQTAVKEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQI---- 150 (261)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccC----
Confidence 764 4799999999721 123456678999888876554 445554 35899999965431
Q ss_pred CCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCc--hHHHHHHhcCCCceEEec
Q 010005 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIG 216 (520)
Q Consensus 142 ~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~--~~~l~~~~~~g~~~~i~g 216 (520)
+..+...|+.+|+..+.+.+.++. .+|+++++++|+.+..+..... -+..........
T Consensus 151 -----------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~------ 213 (261)
T PRK08936 151 -----------PWPLFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEKFADPKQRADVESMI------ 213 (261)
T ss_pred -----------CCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCccccccCCHHHHHHHHhcC------
Confidence 223456899999888777666543 2589999999999988753211 111111111111
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
....+...+|+++++..++.. ......|..+.+.++.
T Consensus 214 ---~~~~~~~~~~va~~~~~l~s~---~~~~~~G~~i~~d~g~ 250 (261)
T PRK08936 214 ---PMGYIGKPEEIAAVAAWLASS---EASYVTGITLFADGGM 250 (261)
T ss_pred ---CCCCCcCHHHHHHHHHHHcCc---ccCCccCcEEEECCCc
Confidence 122456689999999887751 1234567767776543
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.9e-15 Score=143.83 Aligned_cols=218 Identities=13% Similarity=0.050 Sum_probs=147.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
+++++++||||+|.||++++++|.++| ++|+++++ ++.+. .+.+.. ..++..+.+|++|.+++.++++
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G-~~V~~~~r--------~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~ 73 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEG-ARVAVLER--------SAEKLASLRQRF-GDHVLVVEGDVTSYADNQRAVDQ 73 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeC--------CHHHHHHHHHHh-CCcceEEEccCCCHHHHHHHHHH
Confidence 356899999999999999999999999 58998544 32210 111111 2357789999999988777664
Q ss_pred ------CCCEEEEcccCCC---C--Ccc-------hhhHHhhhHHHHHHHHHHHHHC---CCCEEEEeecccccccCCCC
Q 010005 84 ------GASTVFYVDATDL---N--TDD-------FYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 84 ------~~D~Vih~aa~~~---~--~~~-------~~~~~~~Nv~gt~~ll~aa~~~---gvkr~V~~SS~~vyg~~~~~ 142 (520)
++|++||+||... . ..+ ++..+++|+.++..+++++... .-.++|++||...+.
T Consensus 74 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~----- 148 (263)
T PRK06200 74 TVDAFGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFY----- 148 (263)
T ss_pred HHHhcCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcC-----
Confidence 5799999999621 1 111 4567899999999998888643 124799999987752
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCCC--CceEEEEecCccccCCCCCc-----------hHHHHHHhcCC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQL-----------VPLLVNLAKPG 209 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~vyGp~~~~~-----------~~~l~~~~~~g 209 (520)
+..+...|+.+|+..|.+++.++.+. ++++.++.||.+..+..... .+........
T Consensus 149 ----------~~~~~~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~- 217 (263)
T PRK06200 149 ----------PGGGGPLYTASKHAVVGLVRQLAYELAPKIRVNGVAPGGTVTDLRGPASLGQGETSISDSPGLADMIAA- 217 (263)
T ss_pred ----------CCCCCchhHHHHHHHHHHHHHHHHHHhcCcEEEEEeCCccccCCcCccccCCCCcccccccchhHHhhc-
Confidence 12234579999999999988876542 49999999999876532100 0111111111
Q ss_pred CceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 210 WTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 210 ~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.....-+...+|++.++..++... ......|+.+.+.++.
T Consensus 218 --------~~p~~r~~~~~eva~~~~fl~s~~--~~~~itG~~i~vdgG~ 257 (263)
T PRK06200 218 --------ITPLQFAPQPEDHTGPYVLLASRR--NSRALTGVVINADGGL 257 (263)
T ss_pred --------CCCCCCCCCHHHHhhhhhheeccc--ccCcccceEEEEcCce
Confidence 112234667899999999877510 0234678888887653
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=142.92 Aligned_cols=223 Identities=11% Similarity=0.068 Sum_probs=144.9
Q ss_pred CCCCCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCC---CCCCCcEEEEecCCCHHH
Q 010005 2 PFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDS---LSSGRAEYHQVDVRDISQ 77 (520)
Q Consensus 2 ~~~~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~---~~~~~v~~~~~Dl~d~~~ 77 (520)
+...+++++++||||+|.||+++++.|+++| ++|++.++ |+.+. ....+. ....++..+.+|++|+++
T Consensus 2 ~~~~l~~k~vlItGas~gIG~~ia~~l~~~G-~~v~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 73 (260)
T PRK08416 2 MSNEMKGKTLVISGGTRGIGKAIVYEFAQSG-VNIAFTYN-------SNVEEANKIAEDLEQKYGIKAKAYPLNILEPET 73 (260)
T ss_pred cccccCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcC-------CCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence 3455677999999999999999999999999 58877322 11110 000000 012367889999999988
Q ss_pred HHHHHc-------CCCEEEEcccCCC-------------CCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecc
Q 010005 78 IKKVLE-------GASTVFYVDATDL-------------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTA 133 (520)
Q Consensus 78 l~~~l~-------~~D~Vih~aa~~~-------------~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~ 133 (520)
+.++++ ++|++||+|+... ...+....+++|+.+...+.+++ ++.+..++|++||.
T Consensus 74 ~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~ 153 (260)
T PRK08416 74 YKELFKKIDEDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSST 153 (260)
T ss_pred HHHHHHHHHHhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEecc
Confidence 877765 4799999997411 11234557778887766655544 34445689999997
Q ss_pred cccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc--hHHHHHHhcC
Q 010005 134 DVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKP 208 (520)
Q Consensus 134 ~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~--~~~l~~~~~~ 208 (520)
.... +......|+.+|+..|.+.+.++.+ +|+++.++.||.+-.+..... ..........
T Consensus 154 ~~~~---------------~~~~~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~~~~~~~~~~~~~~~~ 218 (260)
T PRK08416 154 GNLV---------------YIENYAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDALKAFTNYEEVKAKTEE 218 (260)
T ss_pred cccc---------------CCCCcccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhhhhccCCHHHHHHHHh
Confidence 5421 1123458999999999998887665 489999999998765421110 0111111111
Q ss_pred CCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 209 GWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 209 g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.. ....+..++|++.+++.++.. ......|+.+.+.++.
T Consensus 219 ~~---------~~~r~~~p~~va~~~~~l~~~---~~~~~~G~~i~vdgg~ 257 (260)
T PRK08416 219 LS---------PLNRMGQPEDLAGACLFLCSE---KASWLTGQTIVVDGGT 257 (260)
T ss_pred cC---------CCCCCCCHHHHHHHHHHHcCh---hhhcccCcEEEEcCCe
Confidence 11 112356799999999988751 1234677888887653
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-14 Score=141.92 Aligned_cols=195 Identities=13% Similarity=0.090 Sum_probs=135.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCC-CCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLP-DSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~-~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
++++++||||+|+||.+++++|+++| ++|+++++ ++.. ..+. +.....++.++.+|++|.+++.++++
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G-~~V~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~ 74 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAG-ARLLLVGR--------NAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLAR 74 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEEC--------CHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 46899999999999999999999999 59999544 3221 0000 00012467889999999988777654
Q ss_pred -----CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|+|||+||... ...+...++++|+.|+.++++++.. .+..++|++||...+.
T Consensus 75 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~---------- 144 (263)
T PRK09072 75 AREMGGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSI---------- 144 (263)
T ss_pred HHhcCCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCc----------
Confidence 4799999998721 1234567888999999999998864 3346899998865431
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (520)
+......|+.+|+..+.+++.++. ..+++++++.|+.+.++.... ... . ... ......
T Consensus 145 -----~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~~~~~--------~~~-~---~~~--~~~~~~ 205 (263)
T PRK09072 145 -----GYPGYASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTAMNSE--------AVQ-A---LNR--ALGNAM 205 (263)
T ss_pred -----CCCCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccccchhh--------hcc-c---ccc--cccCCC
Confidence 112346799999998887776653 368999999999886543211 000 0 000 001135
Q ss_pred ccHHHHHHHHHHHHH
Q 010005 225 TYVENVAHAHVCAAE 239 (520)
Q Consensus 225 i~v~Dva~ai~~~~~ 239 (520)
..++|+|++++.+++
T Consensus 206 ~~~~~va~~i~~~~~ 220 (263)
T PRK09072 206 DDPEDVAAAVLQAIE 220 (263)
T ss_pred CCHHHHHHHHHHHHh
Confidence 678999999999998
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.7e-15 Score=144.23 Aligned_cols=221 Identities=16% Similarity=0.137 Sum_probs=142.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHHc--
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
++++||||+|+||.+++++|+++| .+|++++ |+.... .+.+.+ ...++..+.+|++|++++.++++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G-~~v~~~~--------r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~ 71 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDG-FAVAVAD--------LNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQA 71 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEEe--------CCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 479999999999999999999999 5888844 332100 000001 12357889999999998877764
Q ss_pred -----CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CC-CCEEEEeecccccccCCCCCCCC
Q 010005 84 -----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 -----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~g-vkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
.+|+|||+|+.. ....+++..+++|+.++..+++++.. .+ .+++|++||.....
T Consensus 72 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~--------- 142 (254)
T TIGR02415 72 AEKFGGFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHE--------- 142 (254)
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcC---------
Confidence 479999999872 12234567899999999888776653 33 36899999865531
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceE----EecCCC
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKF----IIGSGE 219 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~----i~g~g~ 219 (520)
+....+.|+.+|+..|.+++.+..+ .++.+++++|+.+..+........... ..+.+.. ......
T Consensus 143 ------~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 214 (254)
T TIGR02415 143 ------GNPILSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPMWEEIDEETSE--IAGKPIGEGFEEFSSEI 214 (254)
T ss_pred ------CCCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChhhhhhhhhhhh--cccCchHHHHHHHHhhC
Confidence 1123568999999999998876543 489999999998866542211110000 0000000 000001
Q ss_pred cccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
....+..++|+++++..++... .....|+.+.+.++
T Consensus 215 ~~~~~~~~~~~a~~~~~l~~~~---~~~~~g~~~~~d~g 250 (254)
T TIGR02415 215 ALGRPSEPEDVAGLVSFLASED---SDYITGQSILVDGG 250 (254)
T ss_pred CCCCCCCHHHHHHHHHhhcccc---cCCccCcEEEecCC
Confidence 1224678999999999888721 12345666666554
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-14 Score=144.30 Aligned_cols=205 Identities=19% Similarity=0.116 Sum_probs=139.9
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCC-CCCcEEEEecCCCHHHHHHH
Q 010005 4 DEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLS-SGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 4 ~~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~-~~~v~~~~~Dl~d~~~l~~~ 81 (520)
...++++++||||+|.||.++++.|.++| ++|+++++ +..+ ..+.+.+. ...+..+.+|++|.+++.++
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G-~~V~~~~r--------~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~ 75 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRLHARG-AKLALVDL--------EEAELAALAAELGGDDRVLTVVADVTDLAAMQAA 75 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeC--------CHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHH
Confidence 34567899999999999999999999999 58988543 3221 00111111 23455667999999888776
Q ss_pred Hc-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHC---CCCEEEEeecccccccCCCCCC
Q 010005 82 LE-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 82 l~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~---gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
++ ++|+|||+||.. ....+++..+++|+.++.++++++... +..++|++||...+.
T Consensus 76 ~~~~~~~~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~------- 148 (296)
T PRK05872 76 AEEAVERFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFA------- 148 (296)
T ss_pred HHHHHHHcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcC-------
Confidence 64 479999999972 122345678999999999999988542 235899999987652
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchH--HHHHHhcCCCceEEecCCC
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVP--LLVNLAKPGWTKFIIGSGE 219 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~--~l~~~~~~g~~~~i~g~g~ 219 (520)
+......|+.+|+..|.+.+.++. .+|+.+.++.|+.+..+....... ..........+ .
T Consensus 149 --------~~~~~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~-------~ 213 (296)
T PRK05872 149 --------AAPGMAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDLVRDADADLPAFRELRARLP-------W 213 (296)
T ss_pred --------CCCCchHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchhhhhccccchhHHHHHhhCC-------C
Confidence 112346899999999999887753 368999999999987653221110 01111111110 0
Q ss_pred cccccccHHHHHHHHHHHHH
Q 010005 220 NMSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~ 239 (520)
....++..+|++++++.++.
T Consensus 214 p~~~~~~~~~va~~i~~~~~ 233 (296)
T PRK05872 214 PLRRTTSVEKCAAAFVDGIE 233 (296)
T ss_pred cccCCCCHHHHHHHHHHHHh
Confidence 12245678999999988877
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.6e-14 Score=143.88 Aligned_cols=215 Identities=18% Similarity=0.130 Sum_probs=142.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
.++++++||||+|+||++++++|+++| .+|++.|+... .......+.+ ...++..+.+|+.|.+++.++++
T Consensus 10 l~~k~~lVTGas~gIG~~ia~~L~~~G-a~Vv~~~~~~~------~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~ 82 (306)
T PRK07792 10 LSGKVAVVTGAAAGLGRAEALGLARLG-ATVVVNDVASA------LDASDVLDEIRAAGAKAVAVAGDISQRATADELVA 82 (306)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEecCCch------hHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 457899999999999999999999999 58888654321 0000000111 12357789999999988877764
Q ss_pred ------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHC--------C---CCEEEEeecccccccC
Q 010005 84 ------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC--------K---VRRLVYNSTADVVFDG 139 (520)
Q Consensus 84 ------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~--------g---vkr~V~~SS~~vyg~~ 139 (520)
++|+|||+||.. ....++...+++|+.++.++++++..+ + -.++|++||...+.
T Consensus 83 ~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-- 160 (306)
T PRK07792 83 TAVGLGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLV-- 160 (306)
T ss_pred HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCccccc--
Confidence 589999999972 223456778999999999999987521 1 14899999876541
Q ss_pred CCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEec
Q 010005 140 SHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIG 216 (520)
Q Consensus 140 ~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g 216 (520)
+......|+.+|+..+.+.+.++. ++|+++.++.|+. .. ....... ...+ ...
T Consensus 161 -------------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg~--~t---~~~~~~~----~~~~-~~~- 216 (306)
T PRK07792 161 -------------GPVGQANYGAAKAGITALTLSAARALGRYGVRANAICPRA--RT---AMTADVF----GDAP-DVE- 216 (306)
T ss_pred -------------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCCC--CC---chhhhhc----cccc-hhh-
Confidence 112345799999999999877654 3689999999862 11 1111110 0000 000
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
....+.+.++|++.++..++.. ......|++|.+.++
T Consensus 217 --~~~~~~~~pe~va~~v~~L~s~---~~~~~tG~~~~v~gg 253 (306)
T PRK07792 217 --AGGIDPLSPEHVVPLVQFLASP---AAAEVNGQVFIVYGP 253 (306)
T ss_pred --hhccCCCCHHHHHHHHHHHcCc---cccCCCCCEEEEcCC
Confidence 0112345799999998877651 123467788887654
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.6e-14 Score=123.24 Aligned_cols=209 Identities=15% Similarity=0.100 Sum_probs=146.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCEE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~V 88 (520)
|||.|+||+|-+|+++++..+++|| +|++ +.|++.+- . ..+++..++.|+.|+.++.+.+.|.|+|
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH-eVTA--------ivRn~~K~--~---~~~~~~i~q~Difd~~~~a~~l~g~DaV 66 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH-EVTA--------IVRNASKL--A---ARQGVTILQKDIFDLTSLASDLAGHDAV 66 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC-eeEE--------EEeChHhc--c---ccccceeecccccChhhhHhhhcCCceE
Confidence 6999999999999999999999996 9999 78887632 1 1157789999999999999999999999
Q ss_pred EEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHH
Q 010005 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAE 168 (520)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E 168 (520)
|..-+...+. ... ........+++..+..++.|++.++.++--..... .. -.+. |.-|...|...+..+|
T Consensus 67 IsA~~~~~~~--~~~---~~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g-~r--LvD~--p~fP~ey~~~A~~~ae 136 (211)
T COG2910 67 ISAFGAGASD--NDE---LHSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEG-TR--LVDT--PDFPAEYKPEALAQAE 136 (211)
T ss_pred EEeccCCCCC--hhH---HHHHHHHHHHHHHhhcCCeeEEEEcCccceEEcCC-ce--eecC--CCCchhHHHHHHHHHH
Confidence 9776543221 221 12344678899999999999998876654321111 11 1122 5567778889999998
Q ss_pred HHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccC
Q 010005 169 ALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSV 248 (520)
Q Consensus 169 ~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~ 248 (520)
.+-.--. +..++|+.+-|+..|-|+++.- ..+-|+....... .--++|..+|.|-|++.-++ .+..
T Consensus 137 ~L~~Lr~-~~~l~WTfvSPaa~f~PGerTg------~yrlggD~ll~n~--~G~SrIS~aDYAiA~lDe~E-----~~~h 202 (211)
T COG2910 137 FLDSLRA-EKSLDWTFVSPAAFFEPGERTG------NYRLGGDQLLVNA--KGESRISYADYAIAVLDELE-----KPQH 202 (211)
T ss_pred HHHHHhh-ccCcceEEeCcHHhcCCccccC------ceEeccceEEEcC--CCceeeeHHHHHHHHHHHHh-----cccc
Confidence 5533322 3459999999999999987531 2223333222221 12367889999999999988 4555
Q ss_pred CCceEEE
Q 010005 249 AGMAFFI 255 (520)
Q Consensus 249 ~g~~yni 255 (520)
.++.|.+
T Consensus 203 ~rqRftv 209 (211)
T COG2910 203 IRQRFTV 209 (211)
T ss_pred cceeeee
Confidence 5665554
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.3e-14 Score=137.57 Aligned_cols=217 Identities=14% Similarity=0.031 Sum_probs=147.8
Q ss_pred CCCCCeEEEEcCC--ChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHH
Q 010005 5 EAIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 5 ~~~~~~ILVtGat--GfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
.+++|+++||||+ +-||..++++|.++| ++|++.++ +... ..+.+ +....+..+.+|+.|.++++++
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G-~~Vi~~~r--------~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~v~~~ 73 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQG-ATVIYTYQ--------NDRMKKSLQK-LVDEEDLLVECDVASDESIERA 73 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCC-CEEEEecC--------chHHHHHHHh-hccCceeEEeCCCCCHHHHHHH
Confidence 3567899999999 799999999999999 58988443 2110 01111 1223577899999999888766
Q ss_pred Hc-------CCCEEEEcccCCC-----------CCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCC
Q 010005 82 LE-------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSH 141 (520)
Q Consensus 82 l~-------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~ 141 (520)
++ ++|++||+||... ...+++..+++|+.++..+.+++... +-.++|++||.....
T Consensus 74 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~---- 149 (252)
T PRK06079 74 FATIKERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSER---- 149 (252)
T ss_pred HHHHHHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCccc----
Confidence 54 4799999998621 22346778899999999988887653 125899999865420
Q ss_pred CCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc--hHHHHHHhcCCCceEEec
Q 010005 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIG 216 (520)
Q Consensus 142 ~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~--~~~l~~~~~~g~~~~i~g 216 (520)
+......|+.+|+..+.+.+.++.+ +|+++.++.||.+-.+..... -+...+......+
T Consensus 150 -----------~~~~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p----- 213 (252)
T PRK06079 150 -----------AIPNYNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTGIKGHKDLLKESDSRTV----- 213 (252)
T ss_pred -----------cCCcchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccccCCChHHHHHHHHhcCc-----
Confidence 1123468999999999998877643 689999999999976632211 1122222221111
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
...+...+|+|+++..++.. ......|++..+.++
T Consensus 214 ----~~r~~~pedva~~~~~l~s~---~~~~itG~~i~vdgg 248 (252)
T PRK06079 214 ----DGVGVTIEEVGNTAAFLLSD---LSTGVTGDIIYVDKG 248 (252)
T ss_pred ----ccCCCCHHHHHHHHHHHhCc---ccccccccEEEeCCc
Confidence 12356689999999988751 124566777777664
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-14 Score=139.77 Aligned_cols=212 Identities=16% Similarity=0.088 Sum_probs=141.8
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEEecCCCHHHHHHHHc-----
Q 010005 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE----- 83 (520)
Q Consensus 11 ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~----- 83 (520)
|+||||+|+||.++++.|.++| ++|+++++... +......+.+ ...++..+.+|+.|.+++.++++
T Consensus 1 vlItGas~giG~~~a~~l~~~G-~~v~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 73 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADG-FEICVHYHSGR------SDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAE 73 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCCH------HHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999 58888443210 0000011111 12457889999999998877765
Q ss_pred --CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHH-----HCCCCEEEEeecccccccCCCCCCCCCCC
Q 010005 84 --GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR-----ECKVRRLVYNSTADVVFDGSHDIHNGDET 149 (520)
Q Consensus 84 --~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~-----~~gvkr~V~~SS~~vyg~~~~~~~~~~E~ 149 (520)
..|++||.++.. ....++..++++|+.++.++++++. +.+.+++|++||...+.
T Consensus 74 ~~~i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~------------ 141 (239)
T TIGR01831 74 HGAYYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVM------------ 141 (239)
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhcc------------
Confidence 369999999861 2335667789999999999988762 24456899999976542
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccccccc
Q 010005 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY 226 (520)
Q Consensus 150 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~ 226 (520)
+..+...|+.+|+..+.+.+.++.+ .|++++.++|+.+.++......+. ........+ ...+..
T Consensus 142 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~-~~~~~~~~~---------~~~~~~ 208 (239)
T TIGR01831 142 ---GNRGQVNYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEMLAEVEHD-LDEALKTVP---------MNRMGQ 208 (239)
T ss_pred ---CCCCCcchHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccchhhhHH-HHHHHhcCC---------CCCCCC
Confidence 1123467999999988777766433 589999999999987754332221 111111111 123445
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCceEEEeC
Q 010005 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (520)
Q Consensus 227 v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~ 257 (520)
.+|+++++..++.. ......|+...+.+
T Consensus 209 ~~~va~~~~~l~~~---~~~~~~g~~~~~~g 236 (239)
T TIGR01831 209 PAEVASLAGFLMSD---GASYVTRQVISVNG 236 (239)
T ss_pred HHHHHHHHHHHcCc---hhcCccCCEEEecC
Confidence 89999999988761 12344555555544
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-14 Score=138.39 Aligned_cols=212 Identities=13% Similarity=0.076 Sum_probs=142.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CC-CCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LL-PDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l-~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
++++|+||||+|+||+++++.|.++| ++|+++ .|++... .+ .......+++.+.+|++|.+++.++++
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G-~~V~~~--------~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 74 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEG-AQVCIN--------SRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEK 74 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCC-CEEEEE--------eCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHH
Confidence 46899999999999999999999999 599994 4433210 01 000112357889999999988876654
Q ss_pred ------CCCEEEEcccCCC-----CCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCCCCCCCCCc
Q 010005 84 ------GASTVFYVDATDL-----NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETL 150 (520)
Q Consensus 84 ------~~D~Vih~aa~~~-----~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~~~~~~E~~ 150 (520)
++|.+||+++... ...+....++.|+.+..++++++... .-.++|++||......
T Consensus 75 ~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~------------ 142 (238)
T PRK05786 75 AAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIYK------------ 142 (238)
T ss_pred HHHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhccc------------
Confidence 3699999998521 11234556789999988888887653 1247999998754210
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccH
Q 010005 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (520)
Q Consensus 151 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v 227 (520)
+..+...|+.+|...+.+++.++.+ .|++++++||+.++++..... -.... . ..+ ..++..
T Consensus 143 --~~~~~~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~~~~~---~~~~~------~--~~~---~~~~~~ 206 (238)
T PRK05786 143 --ASPDQLSYAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDFEPER---NWKKL------R--KLG---DDMAPP 206 (238)
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCCCchh---hhhhh------c--ccc---CCCCCH
Confidence 1234567999999998887776644 489999999999998743210 00000 0 001 134667
Q ss_pred HHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 228 ~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
+|+++++..++.. ......|+.+.+.++
T Consensus 207 ~~va~~~~~~~~~---~~~~~~g~~~~~~~~ 234 (238)
T PRK05786 207 EDFAKVIIWLLTD---EADWVDGVVIPVDGG 234 (238)
T ss_pred HHHHHHHHHHhcc---cccCccCCEEEECCc
Confidence 9999999988862 122356777777553
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-14 Score=155.93 Aligned_cols=216 Identities=16% Similarity=0.169 Sum_probs=151.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++++|||||+|.||.++++.|.++| ++|++.++ +..+ ..+.+.. ..+...+.+|++|++++.++++
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G-~~V~~~~r--------~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~ 337 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAG-DRLLIIDR--------DAEGAKKLAEAL-GDEHLSVQADITDEAAVESAFAQI 337 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeC--------CHHHHHHHHHHh-CCceeEEEccCCCHHHHHHHHHHH
Confidence 46899999999999999999999999 59999544 3221 0011111 2345678999999998887775
Q ss_pred -----CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCCCCCCCC
Q 010005 84 -----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 -----~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
.+|++||+||... ...+++.++++|+.++.++.+++... +-.++|++||...+.
T Consensus 338 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 406 (520)
T PRK06484 338 QARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLL----------- 406 (520)
T ss_pred HHHcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcC-----------
Confidence 3799999998621 12356778999999999999998764 235899999987652
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch---HHHHHHhcCCCceEEecCCCccc
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV---PLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~---~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
+..+...|+.+|+..+.+.+.++.+ +|+++.++.|+.+.++...... ....+...+..+ ..
T Consensus 407 ----~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~---------~~ 473 (520)
T PRK06484 407 ----ALPPRNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALKASGRADFDSIRRRIP---------LG 473 (520)
T ss_pred ----CCCCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhccccHHHHHHHHhcCC---------CC
Confidence 2234568999999999998887543 5899999999999876432110 011111111111 12
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.+..++|+|++++.++.. ......|+.+.+.++.
T Consensus 474 ~~~~~~dia~~~~~l~s~---~~~~~~G~~i~vdgg~ 507 (520)
T PRK06484 474 RLGDPEEVAEAIAFLASP---AASYVNGATLTVDGGW 507 (520)
T ss_pred CCcCHHHHHHHHHHHhCc---cccCccCcEEEECCCc
Confidence 346789999999988751 1234678888887653
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.2e-14 Score=135.53 Aligned_cols=185 Identities=10% Similarity=0.017 Sum_probs=124.7
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHH
Q 010005 3 FDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 3 ~~~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
+++.++++++||||+|.||+++++.|+++| ++|+++++... . ....... .....+.+|++|.+++.+.+
T Consensus 9 ~~~l~~k~~lITGas~gIG~ala~~l~~~G-~~Vi~~~r~~~-------~--~~~~~~~-~~~~~~~~D~~~~~~~~~~~ 77 (245)
T PRK12367 9 QSTWQGKRIGITGASGALGKALTKAFRAKG-AKVIGLTHSKI-------N--NSESNDE-SPNEWIKWECGKEESLDKQL 77 (245)
T ss_pred HHhhCCCEEEEEcCCcHHHHHHHHHHHHCC-CEEEEEECCch-------h--hhhhhcc-CCCeEEEeeCCCHHHHHHhc
Confidence 334567899999999999999999999999 59988554320 1 0101111 12357889999999999999
Q ss_pred cCCCEEEEcccCC----CCCcchhhHHhhhHHHHHHHHHHHHHC-------CCCEEEEeecccccccCCCCCCCCCCCcc
Q 010005 83 EGASTVFYVDATD----LNTDDFYNCYMIIVQGAKNVVTACREC-------KVRRLVYNSTADVVFDGSHDIHNGDETLT 151 (520)
Q Consensus 83 ~~~D~Vih~aa~~----~~~~~~~~~~~~Nv~gt~~ll~aa~~~-------gvkr~V~~SS~~vyg~~~~~~~~~~E~~~ 151 (520)
.++|++||+||.. ....++...+++|+.++.++++++... +-..++..||.+...
T Consensus 78 ~~iDilVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~-------------- 143 (245)
T PRK12367 78 ASLDVLILNHGINPGGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQ-------------- 143 (245)
T ss_pred CCCCEEEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccC--------------
Confidence 8999999999872 223567889999999999999987542 112344444432210
Q ss_pred CCCCCCChHHHHHHHHHHHH---HHhc---CCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccc
Q 010005 152 CCWKFQDLMCDLKAQAEALV---LFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (520)
Q Consensus 152 ~~~~p~~~Y~~sK~~~E~~~---~~~~---~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (520)
+ .....|+.||+..+.+. ..+. .+.++.+..+.|+.+..+-. + ...+
T Consensus 144 -~-~~~~~Y~aSKaal~~~~~l~~~l~~e~~~~~i~v~~~~pg~~~t~~~---------------~----------~~~~ 196 (245)
T PRK12367 144 -P-ALSPSYEISKRLIGQLVSLKKNLLDKNERKKLIIRKLILGPFRSELN---------------P----------IGIM 196 (245)
T ss_pred -C-CCCchhHHHHHHHHHHHHHHHHHHHhhcccccEEEEecCCCcccccC---------------c----------cCCC
Confidence 1 12457999999975432 2221 23678888888766432210 0 1145
Q ss_pred cHHHHHHHHHHHHH
Q 010005 226 YVENVAHAHVCAAE 239 (520)
Q Consensus 226 ~v~Dva~ai~~~~~ 239 (520)
..+|+|+.++.+++
T Consensus 197 ~~~~vA~~i~~~~~ 210 (245)
T PRK12367 197 SADFVAKQILDQAN 210 (245)
T ss_pred CHHHHHHHHHHHHh
Confidence 68999999998887
|
|
| >KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-14 Score=130.24 Aligned_cols=287 Identities=17% Similarity=0.176 Sum_probs=186.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHH-----HHHhcC---CcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHH
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVL-----RLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS 76 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~-----~L~~~g---~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~ 76 (520)
+.+.++.+.-+++|+|+..|.. ++-+.+ .+.|++ ++|++.+. ++.+.+.|..-..
T Consensus 9 ~~~sr~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv--------~sR~pg~~---------ritw~el~~~Gip 71 (315)
T KOG3019|consen 9 SGKSRDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTV--------LSRSPGKA---------RITWPELDFPGIP 71 (315)
T ss_pred CCccccCCCCccccchhccccCcccccccCCCCcccccceEE--------EecCCCCc---------ccccchhcCCCCc
Confidence 4466788889999999988876 333332 147888 77877643 2333332221111
Q ss_pred HHHHHHcCCCEEEEcccC--CCCCcchhhHHhhh-----HHHHHHHHHHHHHCC--CCEEEEeecccccccCCCCCCCCC
Q 010005 77 QIKKVLEGASTVFYVDAT--DLNTDDFYNCYMII-----VQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 77 ~l~~~l~~~D~Vih~aa~--~~~~~~~~~~~~~N-----v~gt~~ll~aa~~~g--vkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
-.|+++++.++. ....+-+...++-| +..|..++++...+. .+.+|..|..++|-.. ....++
T Consensus 72 ------~sc~a~vna~g~n~l~P~rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~pS--~s~eY~ 143 (315)
T KOG3019|consen 72 ------ISCVAGVNAVGNNALLPIRRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYVPS--ESQEYS 143 (315)
T ss_pred ------eehHHHHhhhhhhccCchhhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEeccc--cccccc
Confidence 034555555554 12222333444444 455788999998875 4679999999999433 233567
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHH-HhcCCCceEEecCCCccccccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVN-LAKPGWTKFIIGSGENMSDFTY 226 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~-~~~~g~~~~i~g~g~~~~~~i~ 226 (520)
|+. +....+.....=.+-|...+...+ ..+++++|.|.|.|.+...+-.++.- ..-.|+| .|+|.++++|||
T Consensus 144 e~~--~~qgfd~~srL~l~WE~aA~~~~~--~~r~~~iR~GvVlG~gGGa~~~M~lpF~~g~GGP---lGsG~Q~fpWIH 216 (315)
T KOG3019|consen 144 EKI--VHQGFDILSRLCLEWEGAALKANK--DVRVALIRIGVVLGKGGGALAMMILPFQMGAGGP---LGSGQQWFPWIH 216 (315)
T ss_pred ccc--ccCChHHHHHHHHHHHHHhhccCc--ceeEEEEEEeEEEecCCcchhhhhhhhhhccCCc---CCCCCeeeeeee
Confidence 766 445555666555566666666554 48999999999999876532222211 2335555 489999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccc
Q 010005 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRT 306 (520)
Q Consensus 227 v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~ 306 (520)
++|++..+..+++ ++..+| +.|-..+++.+..||.+.+.++++++ ..+.+|..+++. ++|+..
T Consensus 217 v~DL~~li~~ale-----~~~v~G-ViNgvAP~~~~n~Ef~q~lg~aL~Rp-~~~pvP~fvvqA----------~fG~er 279 (315)
T KOG3019|consen 217 VDDLVNLIYEALE-----NPSVKG-VINGVAPNPVRNGEFCQQLGSALSRP-SWLPVPDFVVQA----------LFGPER 279 (315)
T ss_pred hHHHHHHHHHHHh-----cCCCCc-eecccCCCccchHHHHHHHHHHhCCC-cccCCcHHHHHH----------HhCccc
Confidence 9999999999999 455665 78988999999999999999999987 457888776542 233211
Q ss_pred cCCCCchHHHHHHhccceEechHHHHHhcCCCCCC-CHHHHHHHHH
Q 010005 307 YNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVV-SLEEGVSSTI 351 (520)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~-sleegi~~~~ 351 (520)
..+.-.....-..|+.+ +||+.++ .+.+++++..
T Consensus 280 ----------A~~vLeGqKV~Pqral~-~Gf~f~yp~vk~Al~~i~ 314 (315)
T KOG3019|consen 280 ----------ATVVLEGQKVLPQRALE-LGFEFKYPYVKDALRAIM 314 (315)
T ss_pred ----------eeEEeeCCcccchhHhh-cCceeechHHHHHHHHHh
Confidence 00000011223456666 8999988 4677777653
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-13 Score=131.93 Aligned_cols=197 Identities=17% Similarity=0.052 Sum_probs=139.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHH---c-
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL---E- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l---~- 83 (520)
|++++||||+|.||++++++|+++| ++|+++++ +.+. .. .+...+++++.+|+.|.+++.+++ .
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G-~~v~~~~r--------~~~~--~~-~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 68 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADG-WRVIATAR--------DAAA--LA-ALQALGAEALALDVADPASVAGLAWKLDG 68 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCC-CEEEEEEC--------CHHH--HH-HHHhccceEEEecCCCHHHHHHHHHHhcC
Confidence 3689999999999999999999999 58998544 3221 11 111224678999999999888764 2
Q ss_pred -CCCEEEEcccCCC---------CCcchhhHHhhhHHHHHHHHHHHHHC---CCCEEEEeecccc-cccCCCCCCCCCCC
Q 010005 84 -GASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADV-VFDGSHDIHNGDET 149 (520)
Q Consensus 84 -~~D~Vih~aa~~~---------~~~~~~~~~~~Nv~gt~~ll~aa~~~---gvkr~V~~SS~~v-yg~~~~~~~~~~E~ 149 (520)
++|+|||+++... ...+++..+++|+.++.++++++... +-.++|++||... ++..
T Consensus 69 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 138 (222)
T PRK06953 69 EALDAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDA---------- 138 (222)
T ss_pred CCCCEEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcccccccc----------
Confidence 3899999998721 22356779999999999999998752 2247899988643 3210
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHhcCCC-CceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHH
Q 010005 150 LTCCWKFQDLMCDLKAQAEALVLFANNID-GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVE 228 (520)
Q Consensus 150 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~ 228 (520)
+..+...|+.+|...+.+++.++.++ +++++.++|+.+..+..+ + ...+..+
T Consensus 139 ---~~~~~~~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~~~~--------------------~----~~~~~~~ 191 (222)
T PRK06953 139 ---TGTTGWLYRASKAALNDALRAASLQARHATCIALHPGWVRTDMGG--------------------A----QAALDPA 191 (222)
T ss_pred ---cCCCccccHHhHHHHHHHHHHHhhhccCcEEEEECCCeeecCCCC--------------------C----CCCCCHH
Confidence 11223479999999999999887654 789999999988755311 0 1235678
Q ss_pred HHHHHHHHHHHhhhcccccCCCceEEEe
Q 010005 229 NVAHAHVCAAEALDSRMVSVAGMAFFIT 256 (520)
Q Consensus 229 Dva~ai~~~~~~~~~~~~~~~g~~yni~ 256 (520)
|.+..+..++... .+...+..|...
T Consensus 192 ~~~~~~~~~~~~~---~~~~~~~~~~~~ 216 (222)
T PRK06953 192 QSVAGMRRVIAQA---TRRDNGRFFQYD 216 (222)
T ss_pred HHHHHHHHHHHhc---CcccCceEEeeC
Confidence 9999998887632 234555555444
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.8e-14 Score=138.62 Aligned_cols=230 Identities=12% Similarity=0.012 Sum_probs=146.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCC--CCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLS--SGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~--~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
|++.++|||| |.||+++++.|. +| ++|+++|+.. .+ ....+.+. ..++..+.+|++|.+++.++++
T Consensus 1 ~~k~~lItGa-~gIG~~la~~l~-~G-~~Vv~~~r~~--------~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~ 69 (275)
T PRK06940 1 MKEVVVVIGA-GGIGQAIARRVG-AG-KKVLLADYNE--------ENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAA 69 (275)
T ss_pred CCCEEEEECC-ChHHHHHHHHHh-CC-CEEEEEeCCH--------HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHH
Confidence 3578999997 789999999996 79 6999955432 10 00001111 2357789999999988887775
Q ss_pred ------CCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCC---CCC---CCCCCC
Q 010005 84 ------GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGS---HDI---HNGDET 149 (520)
Q Consensus 84 ------~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~---~~~---~~~~E~ 149 (520)
++|++||+||......+++.++++|+.++.++++++... .-.+.|++||.+...... ... ...+.+
T Consensus 70 ~~~~~g~id~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~ 149 (275)
T PRK06940 70 TAQTLGPVTGLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTE 149 (275)
T ss_pred HHHhcCCCCEEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhccccccccc
Confidence 489999999985445678999999999999999988654 113457777765432110 000 000000
Q ss_pred ----ccC--C---CCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCch----HHHHHHhcCCCceE
Q 010005 150 ----LTC--C---WKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV----PLLVNLAKPGWTKF 213 (520)
Q Consensus 150 ----~~~--~---~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~----~~l~~~~~~g~~~~ 213 (520)
.+. + ..+...|+.||+..+.+.+.++. .+|+++.++.||.+-.+...... ....+......
T Consensus 150 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~--- 226 (275)
T PRK06940 150 ELLSLPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQDELNGPRGDGYRNMFAKS--- 226 (275)
T ss_pred cccccccccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchhhhcCCchHHHHHHhhhC---
Confidence 000 0 02356899999999888776533 36899999999999876421110 01111111111
Q ss_pred EecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 214 i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
...-+...+|+|+++..++.. ......|+.+.+.++.
T Consensus 227 ------p~~r~~~peeia~~~~fL~s~---~~~~itG~~i~vdgg~ 263 (275)
T PRK06940 227 ------PAGRPGTPDEIAALAEFLMGP---RGSFITGSDFLVDGGA 263 (275)
T ss_pred ------CcccCCCHHHHHHHHHHHcCc---ccCcccCceEEEcCCe
Confidence 112356789999999987741 1245678888887654
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.7e-14 Score=135.44 Aligned_cols=196 Identities=12% Similarity=0.086 Sum_probs=131.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCC--CHHHHHHHH--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVR--DISQIKKVL-- 82 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~--d~~~l~~~l-- 82 (520)
++++|+||||+|+||.+++++|+++| ++|+++|+.... ..+ -...+.+ ....++.++.+|+. +.+++.+++
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G-~~Vi~~~r~~~~-~~~--~~~~l~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~ 85 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHG-ATVILLGRTEEK-LEA--VYDEIEA-AGGPQPAIIPLDLLTATPQNYQQLADT 85 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CcEEEEeCCHHH-HHH--HHHHHHh-cCCCCceEEEecccCCCHHHHHHHHHH
Confidence 56899999999999999999999999 599995543210 000 0001111 11235667788886 454444333
Q ss_pred -----cCCCEEEEcccCC--------CCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCC
Q 010005 83 -----EGASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 83 -----~~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
..+|+|||+|+.. .....+...+++|+.++.++++++. +.+.+++|++||.....
T Consensus 86 ~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~~-------- 157 (247)
T PRK08945 86 IEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQ-------- 157 (247)
T ss_pred HHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhcC--------
Confidence 3589999999862 1123456789999999888888774 56778999999976531
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
+......|+.+|+..|.+++.++.+ .++++++++|+.+-++...... .. ....
T Consensus 158 -------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~~~~~~~--------~~---------~~~~ 213 (247)
T PRK08945 158 -------GRANWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTAMRASAF--------PG---------EDPQ 213 (247)
T ss_pred -------CCCCCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCcchhhhc--------Cc---------cccc
Confidence 1123457999999999988876443 4799999999988655211100 00 0012
Q ss_pred ccccHHHHHHHHHHHHH
Q 010005 223 DFTYVENVAHAHVCAAE 239 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~ 239 (520)
.+.-.+|++..+..++.
T Consensus 214 ~~~~~~~~~~~~~~~~~ 230 (247)
T PRK08945 214 KLKTPEDIMPLYLYLMG 230 (247)
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 35678999999998775
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.6e-14 Score=138.51 Aligned_cols=224 Identities=13% Similarity=0.088 Sum_probs=141.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC-CCCCcEEEEecCCCHHHHHHHHc---
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL-SSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~-~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
|+++||||+|.||++++++|.++| ++|++.+ |++.. ....+.+ ...++..+.+|++|.+++.++++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G-~~V~~~~--------r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~ 71 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKG-ARVVISS--------RNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAW 71 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcC-CEEEEEe--------CCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHH
Confidence 589999999999999999999999 5899854 33221 0000000 11357789999999988887764
Q ss_pred ----CCCEEEEcccCCC---------CCcchhhHHhhhHHHHHHHHHH----HH-HCCCCEEEEeecccccccCCCCCCC
Q 010005 84 ----GASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTA----CR-ECKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 ----~~D~Vih~aa~~~---------~~~~~~~~~~~Nv~gt~~ll~a----a~-~~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|++||+||... ...++...+.+|+.++..+..+ .. +.+..++|++||.....
T Consensus 72 ~~~g~id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~-------- 143 (259)
T PRK08340 72 ELLGGIDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKE-------- 143 (259)
T ss_pred HhcCCCCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCC--------
Confidence 5899999998621 1123344567787776554433 33 23456899999987641
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCc---eEEecCCC
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT---KFIIGSGE 219 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~---~~i~g~g~ 219 (520)
+..+...|+.+|+..+.+.+.++.+ .|+++..+.||.+-.+..+..+...........+ ........
T Consensus 144 -------~~~~~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (259)
T PRK08340 144 -------PMPPLVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWEREVLERT 216 (259)
T ss_pred -------CCCCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHHHHHhccC
Confidence 2234568999999999998877653 5899999999988766432111100000000000 00000001
Q ss_pred cccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+..-+...+|+|+++..++.. ......|++..+.++.
T Consensus 217 p~~r~~~p~dva~~~~fL~s~---~~~~itG~~i~vdgg~ 253 (259)
T PRK08340 217 PLKRTGRWEELGSLIAFLLSE---NAEYMLGSTIVFDGAM 253 (259)
T ss_pred CccCCCCHHHHHHHHHHHcCc---ccccccCceEeecCCc
Confidence 122356789999999988751 1245677777777654
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.5e-14 Score=149.20 Aligned_cols=217 Identities=14% Similarity=0.077 Sum_probs=145.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
++++++||||+|.||.++++.|.++| .+|+++|+ +.....+.+.....+...+.+|++|.+++.++++
T Consensus 209 ~g~~vlItGasggIG~~la~~l~~~G-a~vi~~~~--------~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~ 279 (450)
T PRK08261 209 AGKVALVTGAARGIGAAIAEVLARDG-AHVVCLDV--------PAAGEALAAVANRVGGTALALDITAPDAPARIAEHLA 279 (450)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCC-CEEEEEeC--------CccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 58988543 2111111111111234678999999988877665
Q ss_pred ----CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHCCC----CEEEEeecccccccCCCCCCCCCC
Q 010005 84 ----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRECKV----RRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 ----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~gv----kr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
++|+|||+|+.. .....++..+++|+.++.++.+++..... .++|++||...+.
T Consensus 280 ~~~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~----------- 348 (450)
T PRK08261 280 ERHGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIA----------- 348 (450)
T ss_pred HhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcC-----------
Confidence 579999999972 12345677899999999999999977433 6899999986542
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccc
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (520)
+......|+.+|+..+.+++.++. ..|+++.++.|+.+-.+.... ++......... . ..+....
T Consensus 349 ----g~~~~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t~~~~~-~~~~~~~~~~~--~------~~l~~~~ 415 (450)
T PRK08261 349 ----GNRGQTNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIETQMTAA-IPFATREAGRR--M------NSLQQGG 415 (450)
T ss_pred ----CCCCChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcchhhhc-cchhHHHHHhh--c------CCcCCCC
Confidence 112346899999987777766543 368999999999875432111 11111111100 0 0111223
Q ss_pred cHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 226 ~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
-.+|+++++..++.. ......|+++.++++.
T Consensus 416 ~p~dva~~~~~l~s~---~~~~itG~~i~v~g~~ 446 (450)
T PRK08261 416 LPVDVAETIAWLASP---ASGGVTGNVVRVCGQS 446 (450)
T ss_pred CHHHHHHHHHHHhCh---hhcCCCCCEEEECCCc
Confidence 467999999987751 1234668888887743
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-13 Score=133.57 Aligned_cols=220 Identities=14% Similarity=0.073 Sum_probs=144.4
Q ss_pred CCCCCeEEEEcCCC--hhHHHHHHHHHhcCCcEEEEecCCcccccCCCC----CCC---CCCCCC--CCCCcEEEEecCC
Q 010005 5 EAIPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSE----SNS---LLPDSL--SSGRAEYHQVDVR 73 (520)
Q Consensus 5 ~~~~~~ILVtGatG--fIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~----~~~---~l~~~~--~~~~v~~~~~Dl~ 73 (520)
..++++|+||||+| .||.+++++|+++| .+|++.++.. ..|.. ... .+.+.+ ...++..+.+|++
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G-~~vi~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~ 78 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAG-ADIFFTYWTA---YDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLT 78 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCC-CeEEEEeccc---ccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCC
Confidence 34578999999995 79999999999999 5888765321 11110 000 000111 1235678899999
Q ss_pred CHHHHHHHHc-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccc
Q 010005 74 DISQIKKVLE-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADV 135 (520)
Q Consensus 74 d~~~l~~~l~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~v 135 (520)
|.+++.++++ ..|+|||.|+.. ....+++..+++|+.+...+.+++ ++.+-.++|++||...
T Consensus 79 ~~~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~ 158 (256)
T PRK12859 79 QNDAPKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQF 158 (256)
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEccccc
Confidence 9988877764 379999999872 112345667999999998886544 3333459999999765
Q ss_pred cccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCce
Q 010005 136 VFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTK 212 (520)
Q Consensus 136 yg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~ 212 (520)
.. +..+...|+.+|+..+.+.+.++.+ +|++++.++|+.+-.+... ...........
T Consensus 159 ~~---------------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~~---~~~~~~~~~~~-- 218 (256)
T PRK12859 159 QG---------------PMVGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWMT---EEIKQGLLPMF-- 218 (256)
T ss_pred CC---------------CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCCC---HHHHHHHHhcC--
Confidence 31 2234578999999999998777543 6899999999988765322 11111111111
Q ss_pred EEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 213 FIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 213 ~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
....+...+|+++++..++.. ......|+.+.+.++
T Consensus 219 -------~~~~~~~~~d~a~~~~~l~s~---~~~~~~G~~i~~dgg 254 (256)
T PRK12859 219 -------PFGRIGEPKDAARLIKFLASE---EAEWITGQIIHSEGG 254 (256)
T ss_pred -------CCCCCcCHHHHHHHHHHHhCc---cccCccCcEEEeCCC
Confidence 112345689999999887651 123456777666554
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.7e-14 Score=137.23 Aligned_cols=197 Identities=16% Similarity=0.160 Sum_probs=132.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCC---CCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDS---LSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~---~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
|+++||||+|.||.++++.|.++| ++|++++ |+++.. ...+. ........+.+|+.|.+++.++++
T Consensus 1 k~vlItGas~giG~~la~~la~~G-~~vv~~~--------r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 71 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQG-AELFLTD--------RDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAAD 71 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEe--------CCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHH
Confidence 579999999999999999999999 5888844 332210 00000 011224557899999988776554
Q ss_pred ------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----C-CCCEEEEeecccccccCCCCCCC
Q 010005 84 ------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----C-KVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 ------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~-gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|+|||++|.. ....+++..+++|+.++.++++++.. . +..++|++||...+.
T Consensus 72 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~-------- 143 (272)
T PRK07832 72 IHAAHGSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLV-------- 143 (272)
T ss_pred HHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccC--------
Confidence 479999999862 23345577899999999999999742 2 245899999975431
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhc---CCCCceEEEEecCccccCCCCCch-------HHHHHHhcCCCceEEe
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLV-------PLLVNLAKPGWTKFII 215 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~---~~~gi~~~ilRp~~vyGp~~~~~~-------~~l~~~~~~g~~~~i~ 215 (520)
+......|+.+|+..+.+.+.++ ..+|+++++++||.+.++.....- ........
T Consensus 144 -------~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~-------- 208 (272)
T PRK07832 144 -------ALPWHAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPLVNTVEIAGVDREDPRVQKWV-------- 208 (272)
T ss_pred -------CCCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhcccccccCcchhhHHHHH--------
Confidence 11234579999998777766554 336899999999999887532110 00000000
Q ss_pred cCCCcccccccHHHHHHHHHHHHH
Q 010005 216 GSGENMSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 216 g~g~~~~~~i~v~Dva~ai~~~~~ 239 (520)
.......+..+|+|++++.+++
T Consensus 209 --~~~~~~~~~~~~vA~~~~~~~~ 230 (272)
T PRK07832 209 --DRFRGHAVTPEKAAEKILAGVE 230 (272)
T ss_pred --HhcccCCCCHHHHHHHHHHHHh
Confidence 0011234679999999998886
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.8e-14 Score=131.01 Aligned_cols=202 Identities=17% Similarity=0.110 Sum_probs=141.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~-~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
+.|.++||||++-||.++++.|.+.| ++|++ ..|..+ -..+...+....+..+..|++|.+++.++++
T Consensus 5 ~~kv~lITGASSGiG~A~A~~l~~~G-~~vvl--------~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~ 75 (246)
T COG4221 5 KGKVALITGASSGIGEATARALAEAG-AKVVL--------AARREERLEALADEIGAGAALALALDVTDRAAVEAAIEAL 75 (246)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHCC-CeEEE--------EeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHH
Confidence 45889999999999999999999999 59998 455544 1223333333457889999999988665554
Q ss_pred -----CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|++||.||. .....+++.++++|+.|..+..++. .+.+..++|.+||.+--.
T Consensus 76 ~~~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~---------- 145 (246)
T COG4221 76 PEEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRY---------- 145 (246)
T ss_pred HHhhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccc----------
Confidence 58999999998 2334678899999999999988876 455555899999987421
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (520)
+....+.|+.+|+...++...+..+ .+++++.+-||.|-...-.. ....+.......-......
T Consensus 146 -----~y~~~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~--------v~~~g~~~~~~~~y~~~~~ 212 (246)
T COG4221 146 -----PYPGGAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETTEFST--------VRFEGDDERADKVYKGGTA 212 (246)
T ss_pred -----cCCCCccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecceeccc--------ccCCchhhhHHHHhccCCC
Confidence 2234578999999988886665433 68999999999885421110 0000000000000012357
Q ss_pred ccHHHHHHHHHHHHHh
Q 010005 225 TYVENVAHAHVCAAEA 240 (520)
Q Consensus 225 i~v~Dva~ai~~~~~~ 240 (520)
+..+|+|+++..++++
T Consensus 213 l~p~dIA~~V~~~~~~ 228 (246)
T COG4221 213 LTPEDIAEAVLFAATQ 228 (246)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 7899999999999994
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6e-14 Score=134.62 Aligned_cols=197 Identities=12% Similarity=0.089 Sum_probs=139.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc----C
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE----G 84 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~----~ 84 (520)
|+++||||+|.||+++++.|.++| ++|++.+ |+.+ .+.+.....+++.+.+|+.|.+++.++++ +
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g-~~v~~~~--------r~~~--~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 69 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDG-HKVTLVG--------ARRD--DLEVAAKELDVDAIVCDNTDPASLEEARGLFPHH 69 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCC-CEEEEEe--------CCHH--HHHHHHHhccCcEEecCCCCHHHHHHHHHHHhhc
Confidence 479999999999999999999999 5999844 3322 11111011145788999999998888775 5
Q ss_pred CCEEEEcccCCC------------CCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCCCCCCCCCc
Q 010005 85 ASTVFYVDATDL------------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETL 150 (520)
Q Consensus 85 ~D~Vih~aa~~~------------~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~~~~~~E~~ 150 (520)
+|++||+|+... ...++...+++|+.++.++++++... .-.++|++||...
T Consensus 70 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~~--------------- 134 (223)
T PRK05884 70 LDTIVNVPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPENP--------------- 134 (223)
T ss_pred CcEEEECCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCCC---------------
Confidence 899999987410 12456788999999999999998653 1258999998641
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccH
Q 010005 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (520)
Q Consensus 151 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v 227 (520)
.+...|+.+|+..+.+.+.++.+ +|+++.++.||.+..+.. +... . .+.-..
T Consensus 135 ----~~~~~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~~~--------~~~~--~-----------~p~~~~ 189 (223)
T PRK05884 135 ----PAGSAEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQPGY--------DGLS--R-----------TPPPVA 189 (223)
T ss_pred ----CCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCchhh--------hhcc--C-----------CCCCCH
Confidence 12357999999999998777543 689999999998864421 1100 0 011268
Q ss_pred HHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 228 ~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+|+++++..++.. ......|+++.+.++.
T Consensus 190 ~~ia~~~~~l~s~---~~~~v~G~~i~vdgg~ 218 (223)
T PRK05884 190 AEIARLALFLTTP---AARHITGQTLHVSHGA 218 (223)
T ss_pred HHHHHHHHHHcCc---hhhccCCcEEEeCCCe
Confidence 9999999887651 1245677887776654
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.5e-14 Score=135.51 Aligned_cols=163 Identities=15% Similarity=0.073 Sum_probs=118.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc----
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~---- 83 (520)
|++++||||+|++|+++++.|.++| ++|+++++. +... .......++....+|++|.+++.++++
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G-~~V~~~~r~--------~~~~--~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~ 69 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERG-WQVTATVRG--------PQQD--TALQALPGVHIEKLDMNDPASLDQLLQRLQG 69 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCC-CEEEEEeCC--------Ccch--HHHHhccccceEEcCCCCHHHHHHHHHHhhc
Confidence 3689999999999999999999999 699995543 2210 011112357788999999988877765
Q ss_pred -CCCEEEEcccCCC---------CCcchhhHHhhhHHHHHHHHHHHHHC---CCCEEEEeecccccccCCCCCCCCCCCc
Q 010005 84 -GASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGDETL 150 (520)
Q Consensus 84 -~~D~Vih~aa~~~---------~~~~~~~~~~~Nv~gt~~ll~aa~~~---gvkr~V~~SS~~vyg~~~~~~~~~~E~~ 150 (520)
++|+|||+||... ...+....+++|+.++.++.+++... +..+++++||. +|.... .
T Consensus 70 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~--~g~~~~-----~--- 139 (225)
T PRK08177 70 QRFDLLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQ--LGSVEL-----P--- 139 (225)
T ss_pred CCCCEEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccC--cccccc-----C---
Confidence 4899999998721 12345567889999999999988643 23578888875 321110 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccC
Q 010005 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGP 193 (520)
Q Consensus 151 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp 193 (520)
+..+...|+.+|+..|.+++.++.+ .++.+.+++||.+-.+
T Consensus 140 --~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~ 183 (225)
T PRK08177 140 --DGGEMPLYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTD 183 (225)
T ss_pred --CCCCccchHHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecC
Confidence 2234457999999999999887543 5799999999988655
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.4e-14 Score=136.94 Aligned_cols=216 Identities=13% Similarity=0.039 Sum_probs=139.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC---CCCCcEEEEecCCCHHHH----HH
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL---SSGRAEYHQVDVRDISQI----KK 80 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~---~~~~v~~~~~Dl~d~~~l----~~ 80 (520)
+.++||||+|+||+++++.|.++| ++|+++++. .+.. ..+.+.+ ...+...+.+|++|.+++ .+
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G-~~V~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~ 73 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEG-YRVVLHYHR-------SAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEA 73 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCC-CeEEEEcCC-------cHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHH
Confidence 579999999999999999999999 588884321 1110 0000111 122456789999998644 33
Q ss_pred HH-------cCCCEEEEcccCCC-------CCc-----------chhhHHhhhHHHHHHHHHHHHHCC----------CC
Q 010005 81 VL-------EGASTVFYVDATDL-------NTD-----------DFYNCYMIIVQGAKNVVTACRECK----------VR 125 (520)
Q Consensus 81 ~l-------~~~D~Vih~aa~~~-------~~~-----------~~~~~~~~Nv~gt~~ll~aa~~~g----------vk 125 (520)
++ .++|+|||+||... ... +....+++|+.++..+.+++.... ..
T Consensus 74 ~~~~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~ 153 (267)
T TIGR02685 74 IIDACFRAFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNL 153 (267)
T ss_pred HHHHHHHccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCe
Confidence 33 35899999998611 111 245679999999999998865331 13
Q ss_pred EEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHH
Q 010005 126 RLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLL 202 (520)
Q Consensus 126 r~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l 202 (520)
++|++||..... +..+...|+.+|+..|.+.+.++.+ .|+++++++|+.+..|.+.. +..
T Consensus 154 ~iv~~~s~~~~~---------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~~~~--~~~ 216 (267)
T TIGR02685 154 SIVNLCDAMTDQ---------------PLLGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPDAMP--FEV 216 (267)
T ss_pred EEEEehhhhccC---------------CCcccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCccccc--hhH
Confidence 567776653320 2345678999999999998887654 68999999999987664321 111
Q ss_pred HHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 203 VNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 203 ~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
........+ .+ ..+...+|++.+++.++.. ......|+.+.+.++..
T Consensus 217 ~~~~~~~~~-----~~---~~~~~~~~va~~~~~l~~~---~~~~~~G~~~~v~gg~~ 263 (267)
T TIGR02685 217 QEDYRRKVP-----LG---QREASAEQIADVVIFLVSP---KAKYITGTCIKVDGGLS 263 (267)
T ss_pred HHHHHHhCC-----CC---cCCCCHHHHHHHHHHHhCc---ccCCcccceEEECCcee
Confidence 111111111 01 1235689999999988761 12346778888876643
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.55 E-value=7e-14 Score=137.42 Aligned_cols=227 Identities=15% Similarity=0.046 Sum_probs=144.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
.++++++||||+|.||+++++.|+++| ++|+++++ +... ..+.+. ...++..+.+|+.|.+++.++++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G-~~V~~~~r--------~~~~~~~l~~~-~~~~~~~~~~D~~~~~~~~~~~~~ 72 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEG-ARVAVLDK--------SAAGLQELEAA-HGDAVVGVEGDVRSLDDHKEAVAR 72 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeC--------CHHHHHHHHhh-cCCceEEEEeccCCHHHHHHHHHH
Confidence 356899999999999999999999999 59998543 3221 011111 12357789999999887776664
Q ss_pred ------CCCEEEEcccCCC---C--C-------cchhhHHhhhHHHHHHHHHHHHHC---CCCEEEEeecccccccCCCC
Q 010005 84 ------GASTVFYVDATDL---N--T-------DDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 84 ------~~D~Vih~aa~~~---~--~-------~~~~~~~~~Nv~gt~~ll~aa~~~---gvkr~V~~SS~~vyg~~~~~ 142 (520)
++|++||+||... . . .+++..+++|+.++.++++++... .-.++|++||...+.
T Consensus 73 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~----- 147 (262)
T TIGR03325 73 CVAAFGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFY----- 147 (262)
T ss_pred HHHHhCCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceec-----
Confidence 5799999998611 0 0 135678999999999999998653 124788888876541
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCCC--CceEEEEecCccccCCCCCchHHHHHHhcCCCce-EEecCCC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTK-FIIGSGE 219 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~-~i~g~g~ 219 (520)
+......|+.+|+..|.+.+.++.+. ++++.++.||.+..+.................+. .......
T Consensus 148 ----------~~~~~~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (262)
T TIGR03325 148 ----------PNGGGPLYTAAKHAVVGLVKELAFELAPYVRVNGVAPGGMSSDLRGPKSLGMADKSISTVPLGDMLKSVL 217 (262)
T ss_pred ----------CCCCCchhHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCcCCCccccccccccccccccchhhhhhhcC
Confidence 11234579999999999998887653 3899999999997653211000000000000000 0000001
Q ss_pred cccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+...+...+|+|.+++.++... ......|+++.+.++.
T Consensus 218 p~~r~~~p~eva~~~~~l~s~~--~~~~~tG~~i~vdgg~ 255 (262)
T TIGR03325 218 PIGRMPDAEEYTGAYVFFATRG--DTVPATGAVLNYDGGM 255 (262)
T ss_pred CCCCCCChHHhhhheeeeecCC--CcccccceEEEecCCe
Confidence 1234566899999988766510 0123567777776653
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-13 Score=133.95 Aligned_cols=218 Identities=11% Similarity=0.020 Sum_probs=147.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC---CCCCcEEEEecCCCHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL---SSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~---~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
.++++++||||+|.||+++++.|.++| ++|+++++ +..+. .+.+.+ ...++..+.+|++|.+++.++
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G-~~V~~~~r--------~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~ 75 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEG-CHLHLVAR--------DADALEALAADLRAAHGVDVAVHALDLSSPEAREQL 75 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeC--------CHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHH
Confidence 456899999999999999999999999 59999544 32210 000001 123578899999999988877
Q ss_pred Hc---CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCCC
Q 010005 82 LE---GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 82 l~---~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++ ++|++||+++.. ....+++..+++|+.+..++.+++ ++.+-.++|++||.....
T Consensus 76 ~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~~---------- 145 (259)
T PRK06125 76 AAEAGDIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGEN---------- 145 (259)
T ss_pred HHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCccccC----------
Confidence 75 489999999862 122355778899999999888877 344445899998864320
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchH----------HHHHHhcCCCceEE
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVP----------LLVNLAKPGWTKFI 214 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~----------~l~~~~~~g~~~~i 214 (520)
+..+...|+.+|...+.+.+.++. ..|+++.++.||.+..+......+ ........
T Consensus 146 -----~~~~~~~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~------ 214 (259)
T PRK06125 146 -----PDADYICGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATDRMLTLLKGRARAELGDESRWQELLA------ 214 (259)
T ss_pred -----CCCCchHhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccHHHHHHHHhhhhcccCCHHHHHHHhc------
Confidence 223356799999999988887643 368999999999887653111000 00000000
Q ss_pred ecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
......+..++|+|++++.++.. ......|+.+.+.++.
T Consensus 215 ---~~~~~~~~~~~~va~~~~~l~~~---~~~~~~G~~i~vdgg~ 253 (259)
T PRK06125 215 ---GLPLGRPATPEEVADLVAFLASP---RSGYTSGTVVTVDGGI 253 (259)
T ss_pred ---cCCcCCCcCHHHHHHHHHHHcCc---hhccccCceEEecCCe
Confidence 01112356799999999887651 1235678888887764
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.3e-14 Score=140.65 Aligned_cols=176 Identities=11% Similarity=0.045 Sum_probs=125.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-----CCCCCCCCCCCcEEEEecCCCHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-----SLLPDSLSSGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-----~~l~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (520)
+++++++||||+|.||.++++.|.++| ++|++++ |+..+ ..+.......++.++.+|+.|.+++.+
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G-~~Vil~~--------R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~ 82 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAG-AEVILPV--------RNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAA 82 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEe--------CCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHH
Confidence 457899999999999999999999999 5998844 43221 011111112357889999999988877
Q ss_pred HHc-------CCCEEEEcccCC------CCCcchhhHHhhhHHHHHHHHHHHHH---CCCCEEEEeecccccccCCCCCC
Q 010005 81 VLE-------GASTVFYVDATD------LNTDDFYNCYMIIVQGAKNVVTACRE---CKVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 81 ~l~-------~~D~Vih~aa~~------~~~~~~~~~~~~Nv~gt~~ll~aa~~---~gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
+++ ++|++||+||.. .....++..+++|+.|...+.+.+.. .+..|+|++||...+... ....
T Consensus 83 ~~~~~~~~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~~~~-~~~~ 161 (313)
T PRK05854 83 LGEQLRAEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAARRGA-INWD 161 (313)
T ss_pred HHHHHHHhCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhcCCC-cCcc
Confidence 664 379999999972 12356777899999998877777652 234589999998654321 1111
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcC-----CCCceEEEEecCccccC
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANN-----IDGLLTCALRPSNVFGP 193 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~-----~~gi~~~ilRp~~vyGp 193 (520)
...++. +..+...|+.||...+.+.+.++. ..|+.+.++.||.+-.+
T Consensus 162 ~~~~~~--~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~ 213 (313)
T PRK05854 162 DLNWER--SYAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTN 213 (313)
T ss_pred cccccc--cCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccC
Confidence 222222 235567899999999999887753 35799999999998654
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.4e-14 Score=154.49 Aligned_cols=192 Identities=16% Similarity=0.136 Sum_probs=140.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++|+++||||+|.||.++++.|.++| ++|++++ |+++. ....+.+ ...++..+.+|+.|.+++.+++
T Consensus 369 ~~~k~vlItGas~giG~~la~~l~~~G-~~V~~~~--------r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~ 439 (657)
T PRK07201 369 LVGKVVLITGASSGIGRATAIKVAEAG-ATVFLVA--------RNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTV 439 (657)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEE--------CCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHH
Confidence 456899999999999999999999999 5999954 33221 0000000 1235788999999999888877
Q ss_pred c-------CCCEEEEcccCCC------C---CcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCC
Q 010005 83 E-------GASTVFYVDATDL------N---TDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~~------~---~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~ 142 (520)
+ ++|++||+||... . ..++...+++|+.|+.++.+++ ++.+..++|++||.+.++.
T Consensus 440 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~---- 515 (657)
T PRK07201 440 KDILAEHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTN---- 515 (657)
T ss_pred HHHHHhcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCC----
Confidence 6 5899999999621 1 1356778999999998887665 4556779999999987731
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGE 219 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~ 219 (520)
......|+.+|+..|.+.+.++.+ .|+++++++||.+..+..... . ..
T Consensus 516 -----------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~~~~~-----------~---~~---- 566 (657)
T PRK07201 516 -----------APRFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPMIAPT-----------K---RY---- 566 (657)
T ss_pred -----------CCCcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCcccccCcc-----------c---cc----
Confidence 123467999999999998876543 589999999999987642210 0 00
Q ss_pred cccccccHHHHHHHHHHHHH
Q 010005 220 NMSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~ 239 (520)
.....+..+++|+.++.++.
T Consensus 567 ~~~~~~~~~~~a~~i~~~~~ 586 (657)
T PRK07201 567 NNVPTISPEEAADMVVRAIV 586 (657)
T ss_pred cCCCCCCHHHHHHHHHHHHH
Confidence 11235679999999998776
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.1e-13 Score=127.19 Aligned_cols=204 Identities=13% Similarity=0.054 Sum_probs=137.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHH---cC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL---EG 84 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l---~~ 84 (520)
|+|+||||+|+||++++++|.++|. ..|.. ..|+.... ....++.++++|++|.+++.++. .+
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~--------~~~~~~~~-----~~~~~~~~~~~Dls~~~~~~~~~~~~~~ 67 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHA--------TYRHHKPD-----FQHDNVQWHALDVTDEAEIKQLSEQFTQ 67 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEE--------EccCCccc-----cccCceEEEEecCCCHHHHHHHHHhcCC
Confidence 5899999999999999999999862 35555 23332211 12346788999999998776654 46
Q ss_pred CCEEEEcccCCCC----------C---cchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCCCC
Q 010005 85 ASTVFYVDATDLN----------T---DDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 85 ~D~Vih~aa~~~~----------~---~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
+|+|||+||.... . ..+...+++|+.++..+.+++.. .+..+++++||.. |.. .
T Consensus 68 id~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~--~~~-------~ 138 (235)
T PRK09009 68 LDWLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKV--GSI-------S 138 (235)
T ss_pred CCEEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeecc--ccc-------c
Confidence 8999999997311 0 12346788999999888777754 2345899988742 110 1
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC-----CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI-----DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
+. +..+...|+.+|+..+.+.+.++.+ .++.+..+.||.+..+..... .. .....
T Consensus 139 ~~---~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~~~--------~~---------~~~~~ 198 (235)
T PRK09009 139 DN---RLGGWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSKPF--------QQ---------NVPKG 198 (235)
T ss_pred cC---CCCCcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCcch--------hh---------ccccC
Confidence 10 1234568999999999998877633 489999999999876643210 00 01122
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeC
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~ 257 (520)
.+...+|+|+++..++... .+...|..+.+.+
T Consensus 199 ~~~~~~~~a~~~~~l~~~~---~~~~~g~~~~~~g 230 (235)
T PRK09009 199 KLFTPEYVAQCLLGIIANA---TPAQSGSFLAYDG 230 (235)
T ss_pred CCCCHHHHHHHHHHHHHcC---ChhhCCcEEeeCC
Confidence 3567999999999988721 1234666655544
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-13 Score=126.36 Aligned_cols=159 Identities=19% Similarity=0.117 Sum_probs=117.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCC----CC--CCCCCcEEEEecCCCHHHHHHHH
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLP----DS--LSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~----~~--~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
++++||||+|+||.++++.|.++|.+.|.++ .|++...... .. ....++..+.+|+.+.+++.+++
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~--------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 72 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLL--------SRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAAL 72 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEE--------eCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 4799999999999999999999985467773 3432211000 00 01235678899999988877766
Q ss_pred cC-------CCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCC
Q 010005 83 EG-------ASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 83 ~~-------~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
+. +|+|||+++.. ....+++..+++|+.++.++++++++.+.+++|++||.....
T Consensus 73 ~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ii~~ss~~~~~----------- 141 (180)
T smart00822 73 AAIPARLGPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLDFFVLFSSVAGVL----------- 141 (180)
T ss_pred HHHHHHcCCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcceEEEEccHHHhc-----------
Confidence 43 69999999861 122456778999999999999999888888999999876531
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccc
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVF 191 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vy 191 (520)
+......|+.+|...+.+++... ..+++++++.|+.+-
T Consensus 142 ----~~~~~~~y~~sk~~~~~~~~~~~-~~~~~~~~~~~g~~~ 179 (180)
T smart00822 142 ----GNPGQANYAAANAFLDALAAHRR-ARGLPATSINWGAWA 179 (180)
T ss_pred ----CCCCchhhHHHHHHHHHHHHHHH-hcCCceEEEeecccc
Confidence 11234679999999999996554 478999999887653
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=132.79 Aligned_cols=198 Identities=15% Similarity=0.101 Sum_probs=141.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCC---CCCcEEEEecCCCHHHHHH
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLS---SGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~---~~~v~~~~~Dl~d~~~l~~ 80 (520)
++++++++|||||+-||..+++.|.++| ++|+. +.|+.++ ..+.+.+. .-.+..+.+|+.|++++.+
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g-~~liL--------vaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~ 73 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRG-YNLIL--------VARREDKLEALAKELEDKTGVEVEVIPADLSDPEALER 73 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCC-CEEEE--------EeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHH
Confidence 4567899999999999999999999999 59998 6666541 11111222 2346789999999988887
Q ss_pred HHc-------CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCC
Q 010005 81 VLE-------GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 81 ~l~-------~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~ 142 (520)
+.+ .+|++||+||. ..++.....++++|+.+...+-.+. .+.+-.++|.++|...+-
T Consensus 74 l~~~l~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~----- 148 (265)
T COG0300 74 LEDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLI----- 148 (265)
T ss_pred HHHHHHhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcC-----
Confidence 764 48999999998 2345566789999999987776665 455666899999998762
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhc---CCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGE 219 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~---~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~ 219 (520)
|....+.|+.||+..-.+.+.+. +..|+.++.+-||.+..+.. + . .+..... ..
T Consensus 149 ----------p~p~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f~--------~-~-~~~~~~~---~~ 205 (265)
T COG0300 149 ----------PTPYMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEFF--------D-A-KGSDVYL---LS 205 (265)
T ss_pred ----------CCcchHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCccccccc--------c-c-ccccccc---cc
Confidence 22346789999998655544332 44799999999988875432 1 0 1111011 01
Q ss_pred cccccccHHHHHHHHHHHHH
Q 010005 220 NMSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~ 239 (520)
...-++..+|+|++.+.+++
T Consensus 206 ~~~~~~~~~~va~~~~~~l~ 225 (265)
T COG0300 206 PGELVLSPEDVAEAALKALE 225 (265)
T ss_pred chhhccCHHHHHHHHHHHHh
Confidence 23456779999999998888
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.6e-13 Score=135.25 Aligned_cols=223 Identities=18% Similarity=0.133 Sum_probs=145.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCccccc-CCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQL-DPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l-~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
.++++++||||+|.||+++++.|.++| .+|++.|+..+..- .++... ....+.+ ...++..+.+|++|.+++.++
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G-~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~ 82 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEG-ARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANL 82 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHH
Confidence 457899999999999999999999999 58888665321000 000010 0000111 123567889999999887766
Q ss_pred Hc-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CC------CCEEEEeecccccc
Q 010005 82 LE-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CK------VRRLVYNSTADVVF 137 (520)
Q Consensus 82 l~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~g------vkr~V~~SS~~vyg 137 (520)
++ ++|++||+||.. ....+++..+++|+.++.++.+++.. .+ -.++|++||.+...
T Consensus 83 ~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~ 162 (286)
T PRK07791 83 VDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQ 162 (286)
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhCc
Confidence 54 479999999972 22345678899999999998887742 11 24899999976541
Q ss_pred cCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEE
Q 010005 138 DGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFI 214 (520)
Q Consensus 138 ~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i 214 (520)
+......|+.+|+..+.+.+.++.+ +|+++.++.|+ +..+. ............
T Consensus 163 ---------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~~----~~~~~~~~~~~~---- 218 (286)
T PRK07791 163 ---------------GSVGQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTRM----TETVFAEMMAKP---- 218 (286)
T ss_pred ---------------CCCCchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCCc----chhhHHHHHhcC----
Confidence 1123468999999999988876554 68999999997 42221 111111111100
Q ss_pred ecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.. ....+...+|++++++.++.. ......|+.+.+.++.
T Consensus 219 -~~--~~~~~~~pedva~~~~~L~s~---~~~~itG~~i~vdgG~ 257 (286)
T PRK07791 219 -EE--GEFDAMAPENVSPLVVWLGSA---ESRDVTGKVFEVEGGK 257 (286)
T ss_pred -cc--cccCCCCHHHHHHHHHHHhCc---hhcCCCCcEEEEcCCc
Confidence 01 111345699999999987751 1245678888887654
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.3e-13 Score=138.54 Aligned_cols=181 Identities=17% Similarity=0.117 Sum_probs=120.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
.++|+|+||||+|+||+++++.|.++| ++|+++++. +++ +.... ...++..+.+|++|.+++.+.+.
T Consensus 176 l~gK~VLITGASgGIG~aLA~~La~~G-~~Vi~l~r~--------~~~--l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~ 244 (406)
T PRK07424 176 LKGKTVAVTGASGTLGQALLKELHQQG-AKVVALTSN--------SDK--ITLEINGEDLPVKTLHWQVGQEAALAELLE 244 (406)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCC--------HHH--HHHHHhhcCCCeEEEEeeCCCHHHHHHHhC
Confidence 457899999999999999999999999 599985443 211 00000 11246678999999999999999
Q ss_pred CCCEEEEcccCC----CCCcchhhHHhhhHHHHHHHHHHHHH----CCC---C-EEEEeecccccccCCCCCCCCCCCcc
Q 010005 84 GASTVFYVDATD----LNTDDFYNCYMIIVQGAKNVVTACRE----CKV---R-RLVYNSTADVVFDGSHDIHNGDETLT 151 (520)
Q Consensus 84 ~~D~Vih~aa~~----~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gv---k-r~V~~SS~~vyg~~~~~~~~~~E~~~ 151 (520)
++|++||+||.. .+..+++..+++|+.|+.++++++.. .+. + .+|.+|++..
T Consensus 245 ~IDiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa~~---------------- 308 (406)
T PRK07424 245 KVDILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEAEV---------------- 308 (406)
T ss_pred CCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEccccc----------------
Confidence 999999999872 22235678899999999999999753 221 2 3455544211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHH
Q 010005 152 CCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVA 231 (520)
Q Consensus 152 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva 231 (520)
.......|+.||...+.+........++.+..+.| ||..... . ....+..+|+|
T Consensus 309 -~~~~~~~Y~ASKaAl~~l~~l~~~~~~~~I~~i~~----gp~~t~~-----------------~----~~~~~spe~vA 362 (406)
T PRK07424 309 -NPAFSPLYELSKRALGDLVTLRRLDAPCVVRKLIL----GPFKSNL-----------------N----PIGVMSADWVA 362 (406)
T ss_pred -cCCCchHHHHHHHHHHHHHHHHHhCCCCceEEEEe----CCCcCCC-----------------C----cCCCCCHHHHH
Confidence 00123469999999988654322223443444334 3322111 0 01236789999
Q ss_pred HHHHHHHH
Q 010005 232 HAHVCAAE 239 (520)
Q Consensus 232 ~ai~~~~~ 239 (520)
+.++.+++
T Consensus 363 ~~il~~i~ 370 (406)
T PRK07424 363 KQILKLAK 370 (406)
T ss_pred HHHHHHHH
Confidence 99999887
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.2e-13 Score=131.88 Aligned_cols=225 Identities=13% Similarity=0.063 Sum_probs=147.3
Q ss_pred CCCCCCCCCeEEEEcCCC--hhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHH
Q 010005 1 MPFDEAIPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQI 78 (520)
Q Consensus 1 m~~~~~~~~~ILVtGatG--fIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l 78 (520)
|++..+++|.++||||++ -||.++++.|.++| ++|++.++... . ......+.+.. .....+.+|++|++++
T Consensus 1 ~~~~~~~~k~~lITGas~~~GIG~a~a~~la~~G-~~v~~~~r~~~--~--~~~~~~l~~~~--g~~~~~~~Dv~~~~~v 73 (260)
T PRK06603 1 MTTGLLQGKKGLITGIANNMSISWAIAQLAKKHG-AELWFTYQSEV--L--EKRVKPLAEEI--GCNFVSELDVTNPKSI 73 (260)
T ss_pred CCCcccCCcEEEEECCCCCcchHHHHHHHHHHcC-CEEEEEeCchH--H--HHHHHHHHHhc--CCceEEEccCCCHHHH
Confidence 666667789999999997 79999999999999 58888543210 0 00000111111 1223578999999888
Q ss_pred HHHHc-------CCCEEEEcccCCC-----------CCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeeccccccc
Q 010005 79 KKVLE-------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFD 138 (520)
Q Consensus 79 ~~~l~-------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~ 138 (520)
.++++ ++|++||.|+... ...++...+++|+.++..+++++... .-.++|++||.....
T Consensus 74 ~~~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~- 152 (260)
T PRK06603 74 SNLFDDIKEKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEK- 152 (260)
T ss_pred HHHHHHHHHHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCcccc-
Confidence 77764 4799999998521 22356678999999999988876432 124899999865421
Q ss_pred CCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCc--hHHHHHHhcCCCceE
Q 010005 139 GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKF 213 (520)
Q Consensus 139 ~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~--~~~l~~~~~~g~~~~ 213 (520)
+......|+.||+..+.+.+.++. .+|+++.++.||.+-.+..... .+...+......
T Consensus 153 --------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~--- 215 (260)
T PRK06603 153 --------------VIPNYNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSAIGDFSTMLKSHAATA--- 215 (260)
T ss_pred --------------CCCcccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhcCCCcHHHHHHHHhcC---
Confidence 112246799999999998887754 3689999999999865521100 011111111111
Q ss_pred EecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 214 i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
....+...+|+|++++.++.. ......|+.+.+.++.
T Consensus 216 ------p~~r~~~pedva~~~~~L~s~---~~~~itG~~i~vdgG~ 252 (260)
T PRK06603 216 ------PLKRNTTQEDVGGAAVYLFSE---LSKGVTGEIHYVDCGY 252 (260)
T ss_pred ------CcCCCCCHHHHHHHHHHHhCc---ccccCcceEEEeCCcc
Confidence 122356789999999988861 1234567778887653
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.6e-13 Score=129.07 Aligned_cols=220 Identities=16% Similarity=0.078 Sum_probs=144.4
Q ss_pred CCCCeEEEEcCC--ChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCCCCCCCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGat--GfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~-~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++|+++||||+ +-||.++++.|.++| ++|++.++.. |... ...+.+.....++..+.+|+.|.+++.+++
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G-~~v~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 78 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAG-AKLVFTYAGE-----RLEKEVRELADTLEGQESLLLPCDVTSDEEITACF 78 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEecCcc-----cchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHH
Confidence 457899999997 899999999999999 5888854321 1111 001111112245778999999998887766
Q ss_pred c-------CCCEEEEcccCCC-----------CCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCC
Q 010005 83 E-------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~ 142 (520)
+ +.|++||+|+... +...+...+++|+.++..+.+++... +-.++|++||....-
T Consensus 79 ~~~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~----- 153 (257)
T PRK08594 79 ETIKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGER----- 153 (257)
T ss_pred HHHHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCcc-----
Confidence 4 3799999998621 11234557889999988888777643 124899999875420
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCc--hHHHHHHhcCCCceEEecC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGS 217 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~--~~~l~~~~~~g~~~~i~g~ 217 (520)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+-.+..... .+........
T Consensus 154 ----------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~--------- 214 (257)
T PRK08594 154 ----------VVQNYNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAKGVGGFNSILKEIEE--------- 214 (257)
T ss_pred ----------CCCCCchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHhhhccccHHHHHHhh---------
Confidence 112346899999999999887754 3589999999998876521110 0010111111
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
......+...+|++++++.++.. ......|+.+.+.++
T Consensus 215 ~~p~~r~~~p~~va~~~~~l~s~---~~~~~tG~~~~~dgg 252 (257)
T PRK08594 215 RAPLRRTTTQEEVGDTAAFLFSD---LSRGVTGENIHVDSG 252 (257)
T ss_pred cCCccccCCHHHHHHHHHHHcCc---ccccccceEEEECCc
Confidence 01122356689999999987751 123466777777664
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.7e-13 Score=131.22 Aligned_cols=220 Identities=14% Similarity=0.113 Sum_probs=144.4
Q ss_pred CCCCeEEEEcCCC--hhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 6 AIPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGatG--fIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
++++++|||||++ -||+.++++|.++| ++|++.++... .. .....+.+.. .....+.+|++|.+++.++++
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~G-a~V~~~~r~~~--~~--~~~~~~~~~~--g~~~~~~~Dv~d~~~v~~~~~ 77 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQG-AELAFTYQGEA--LG--KRVKPLAESL--GSDFVLPCDVEDIASVDAVFE 77 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCC-CEEEEecCchH--HH--HHHHHHHHhc--CCceEEeCCCCCHHHHHHHHH
Confidence 3468999999997 99999999999999 69988543210 00 0000111111 123468999999988877664
Q ss_pred -------CCCEEEEcccCCC-----------CCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCCC
Q 010005 84 -------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 84 -------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~~ 143 (520)
.+|++||+||... ...++...+++|+.++.++.+++... +-.++|++||.+...
T Consensus 78 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~------ 151 (271)
T PRK06505 78 ALEKKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTR------ 151 (271)
T ss_pred HHHHHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCccc------
Confidence 4799999998621 12456678899999999988877542 125899999875421
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchH--HHHHHhcCCCceEEecCC
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP--LLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~--~l~~~~~~g~~~~i~g~g 218 (520)
+......|+.+|+..+.+.+.++.+ +|+++.++.||.+-.+......+ ..........+
T Consensus 152 ---------~~~~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~p------- 215 (271)
T PRK06505 152 ---------VMPNYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGAGIGDARAIFSYQQRNSP------- 215 (271)
T ss_pred ---------cCCccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccccccCcchHHHHHHHhhcCC-------
Confidence 1123467999999999888877654 68999999999987653221111 11111111111
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..-+...+|+|++++.++.. ......|+.+.+.++.
T Consensus 216 --~~r~~~peeva~~~~fL~s~---~~~~itG~~i~vdgG~ 251 (271)
T PRK06505 216 --LRRTVTIDEVGGSALYLLSD---LSSGVTGEIHFVDSGY 251 (271)
T ss_pred --ccccCCHHHHHHHHHHHhCc---cccccCceEEeecCCc
Confidence 11245689999999988751 1234578888887754
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.4e-13 Score=130.18 Aligned_cols=219 Identities=13% Similarity=0.075 Sum_probs=142.8
Q ss_pred CCCCeEEEEcC--CChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCC-CCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNG--RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS-SGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGa--tGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~-~~~v~~~~~Dl~d~~~l~~~l 82 (520)
+++++++|||| ++-||.++++.|.++| ++|++.++. .|... .+.+... ......+++|++|.+++.+++
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G-~~v~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 75 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQG-AELAFTYVV-----DKLEE--RVRKMAAELDSELVFRCDVASDDEINQVF 75 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCC-CEEEEEcCc-----HHHHH--HHHHHHhccCCceEEECCCCCHHHHHHHH
Confidence 45689999997 6799999999999999 588874331 11111 1111100 123457899999999888776
Q ss_pred c-------CCCEEEEcccCCCC---------C---cchhhHHhhhHHHHHHHHHHHHHC---CCCEEEEeecccccccCC
Q 010005 83 E-------GASTVFYVDATDLN---------T---DDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGS 140 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~~~---------~---~~~~~~~~~Nv~gt~~ll~aa~~~---gvkr~V~~SS~~vyg~~~ 140 (520)
+ ++|++||+||.... . ..++..+++|+.++..+.+++... +-.++|++||...+.
T Consensus 76 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~--- 152 (261)
T PRK08690 76 ADLGKHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVR--- 152 (261)
T ss_pred HHHHHHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEccccccc---
Confidence 4 48999999997311 1 134456788999988887765432 225799999876531
Q ss_pred CCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCch--HHHHHHhcCCCceEEe
Q 010005 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFII 215 (520)
Q Consensus 141 ~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~--~~l~~~~~~g~~~~i~ 215 (520)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+-.+...... +...+...+..
T Consensus 153 ------------~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~----- 215 (261)
T PRK08690 153 ------------AIPNYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIADFGKLLGHVAAHN----- 215 (261)
T ss_pred ------------CCCCcccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhcCCchHHHHHHHhhcC-----
Confidence 112346799999999988776643 37899999999998765321110 11111111111
Q ss_pred cCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 216 g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+...+...+|+|+++..++.. ......|+.+.+.++.
T Consensus 216 ----p~~r~~~peevA~~v~~l~s~---~~~~~tG~~i~vdgG~ 252 (261)
T PRK08690 216 ----PLRRNVTIEEVGNTAAFLLSD---LSSGITGEITYVDGGY 252 (261)
T ss_pred ----CCCCCCCHHHHHHHHHHHhCc---ccCCcceeEEEEcCCc
Confidence 122356799999999988861 1245677887777654
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-13 Score=149.96 Aligned_cols=164 Identities=17% Similarity=0.103 Sum_probs=122.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
+.++++|||||+|+||++++++|.++| ++|+++++ +..+. .+.+.+ ...++..+.+|++|.+++.+++
T Consensus 313 ~~~~~~lv~G~s~giG~~~a~~l~~~G-~~v~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~ 383 (582)
T PRK05855 313 FSGKLVVVTGAGSGIGRETALAFAREG-AEVVASDI--------DEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFA 383 (582)
T ss_pred CCCCEEEEECCcCHHHHHHHHHHHHCC-CEEEEEeC--------CHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHH
Confidence 456899999999999999999999999 58998544 32210 000101 1235788999999999888777
Q ss_pred c-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHH----HCC-CCEEEEeecccccccCCCCC
Q 010005 83 E-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECK-VRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~g-vkr~V~~SS~~vyg~~~~~~ 143 (520)
+ ++|++||+||.. ....++...+++|+.|+.++.+++. +.+ -.++|++||.+.|..
T Consensus 384 ~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~----- 458 (582)
T PRK05855 384 EWVRAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAP----- 458 (582)
T ss_pred HHHHHhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccC-----
Confidence 5 379999999982 1234567788899999999888754 333 258999999988731
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccC
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGP 193 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp 193 (520)
..+...|+.||+..|.+.+.++. ++|+++++++||.+-.+
T Consensus 459 ----------~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~ 501 (582)
T PRK05855 459 ----------SRSLPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTN 501 (582)
T ss_pred ----------CCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCccc
Confidence 23457899999998888776543 36899999999988654
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-12 Score=128.32 Aligned_cols=222 Identities=12% Similarity=0.071 Sum_probs=145.2
Q ss_pred CCCCeEEEEcCC--ChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCCCCCCCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGat--GfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~-~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++++++||||+ +-||.++++.|.++| ++|++.++... -.|... ...+.+. ......+.+|++|.+++.+++
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G-~~v~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~v~~~~ 78 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAG-AELGITYLPDE--KGRFEKKVRELTEP--LNPSLFLPCDVQDDAQIEETF 78 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCC-CEEEEEecCcc--cchHHHHHHHHHhc--cCcceEeecCcCCHHHHHHHH
Confidence 456899999986 799999999999999 58877443211 011111 0011111 123567899999999887766
Q ss_pred c-------CCCEEEEcccCCC-----------CCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCC
Q 010005 83 E-------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~ 142 (520)
+ ++|++||+||... +..+++..+++|+.++..+.+++... .-.++|++||.....
T Consensus 79 ~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~~----- 153 (258)
T PRK07370 79 ETIKQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGVR----- 153 (258)
T ss_pred HHHHHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEecccccc-----
Confidence 4 4799999998621 12345778999999999988887532 125899999965320
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc--hHHHHHHhcCCCceEEecC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGS 217 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~--~~~l~~~~~~g~~~~i~g~ 217 (520)
+......|+.+|+..+.+.+.++.+ +|+++.++.||.+-.+..... .+.........
T Consensus 154 ----------~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~-------- 215 (258)
T PRK07370 154 ----------AIPNYNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSAVGGILDMIHHVEEK-------- 215 (258)
T ss_pred ----------CCcccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhccccchhhhhhhhhc--------
Confidence 1123468999999999998877543 689999999999876532111 01111111111
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.....+...+|++.++..++.. ......|+.+.+.++.
T Consensus 216 -~p~~r~~~~~dva~~~~fl~s~---~~~~~tG~~i~vdgg~ 253 (258)
T PRK07370 216 -APLRRTVTQTEVGNTAAFLLSD---LASGITGQTIYVDAGY 253 (258)
T ss_pred -CCcCcCCCHHHHHHHHHHHhCh---hhccccCcEEEECCcc
Confidence 1122456689999999988751 1234667777776643
|
|
| >PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER) | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.7e-16 Score=141.53 Aligned_cols=128 Identities=30% Similarity=0.394 Sum_probs=49.6
Q ss_pred cchhhcccccchhHHHHHHHHHHHHHHHHhCchhHHHhHHHHHHHHHHHHHhhcccccccCCCC------CCCCCCceEe
Q 010005 384 VADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAAKFLLLLSAVLFGYGILPSNIFGFNV------KRISPSCFEL 457 (520)
Q Consensus 384 ~a~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~------~~~p~~~~~~ 457 (520)
++|+++|||.+.|+.++++.+++|++|...+++++|.+|+++++++...+++... ++++++.+ |+.+ ++++
T Consensus 1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~ 77 (169)
T PF02453_consen 1 VADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLL-SKVLSRSPKGPFKEPLDY--DLEI 77 (169)
T ss_dssp ----------------------------------------------------THC-CCTCCHHHHCTTHHHHCH--HHHH
T ss_pred CceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHhccCCCCCccCCccc--cccc
Confidence 5789999999999999999999999999999999999999999999999999999 69999876 4444 4999
Q ss_pred ChhHHHHHHHHHHHHHHhHHHHHHhhhcCCChhHHHHHHHHHHHHhcCCccCccccccccc
Q 010005 458 SETVIKDSIARIAFLWNMGFRNIRLLAKGDDWNTFFKVCSAYYIKVSRTHLPGNFYDNHFL 518 (520)
Q Consensus 458 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~g~~~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~ 518 (520)
|||.+.+++..++..||..+..+|++..|+|++.+++++++||++ +..|+++....|
T Consensus 78 ~~~~~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l----~~lg~~~s~~~L 134 (169)
T PF02453_consen 78 SEERVERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYIL----SFLGSWFSFLTL 134 (169)
T ss_dssp CCHHHHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG-------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHH----HHHHHHcCHHHH
Confidence 999999999999999999999999999999999999999999999 555666554433
|
Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A. |
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-12 Score=127.10 Aligned_cols=219 Identities=14% Similarity=0.109 Sum_probs=144.4
Q ss_pred CCCCeEEEEcCC--ChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 6 AIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGat--GfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
.++++++||||+ +-||.+++++|+++| ++|++.|+... ..+....+.+.. .....+.+|++|.+++.++++
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G-~~v~l~~r~~~----~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~ 80 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALG-AELAVTYLNDK----ARPYVEPLAEEL--DAPIFLPLDVREPGQLEAVFA 80 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcC-CEEEEEeCChh----hHHHHHHHHHhh--ccceEEecCcCCHHHHHHHHH
Confidence 356899999998 499999999999999 58888554310 000000111111 234578999999988876653
Q ss_pred -------CCCEEEEcccCCC-----------CCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCCC
Q 010005 84 -------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 84 -------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~~ 143 (520)
+.|++||+||... +..+++..+++|+.++.++.+++... .-.++|++||.....
T Consensus 81 ~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~~------ 154 (258)
T PRK07533 81 RIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAEK------ 154 (258)
T ss_pred HHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEecccccc------
Confidence 4799999998621 22356789999999999999887543 124799999864320
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc--hHHHHHHhcCCCceEEecCC
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~--~~~l~~~~~~g~~~~i~g~g 218 (520)
+......|+.+|+..+.+.+.++.+ +|+++.++.|+.+-.+-.... .+...+......
T Consensus 155 ---------~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~-------- 217 (258)
T PRK07533 155 ---------VVENYNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASGIDDFDALLEDAAERA-------- 217 (258)
T ss_pred ---------CCccchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhccCCcHHHHHHHHhcC--------
Confidence 1123467999999999888776543 689999999998876532111 111112221111
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
....+...+|++++++.++.. ......|+.+.+.++
T Consensus 218 -p~~r~~~p~dva~~~~~L~s~---~~~~itG~~i~vdgg 253 (258)
T PRK07533 218 -PLRRLVDIDDVGAVAAFLASD---AARRLTGNTLYIDGG 253 (258)
T ss_pred -CcCCCCCHHHHHHHHHHHhCh---hhccccCcEEeeCCc
Confidence 112356789999999988751 123567777777664
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-12 Score=126.58 Aligned_cols=218 Identities=14% Similarity=0.049 Sum_probs=142.0
Q ss_pred CCCCeEEEEcC--CChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCCCCCCCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNG--RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGa--tGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~-~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++++++|||| ++-||.++++.|.++| ++|++.++.. .+. ...+.+.. ...+..+.+|+.|.+++.+++
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G-~~v~l~~r~~------~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~ 76 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQG-AEVVLTGFGR------ALRLTERIAKRL-PEPAPVLELDVTNEEHLASLA 76 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCC-CEEEEecCcc------chhHHHHHHHhc-CCCCcEEeCCCCCHHHHHHHH
Confidence 45689999999 8999999999999999 5898854321 111 00111111 125678999999998887765
Q ss_pred c-------CCCEEEEcccCCC-----------CCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCC
Q 010005 83 E-------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~ 142 (520)
+ ++|++||+||... +..+....+++|+.++.++.+++... +-.++|++|+....
T Consensus 77 ~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~~~------ 150 (256)
T PRK07889 77 DRVREHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDATV------ 150 (256)
T ss_pred HHHHHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeecccc------
Confidence 4 4899999998721 11234557899999999888887543 12478888754321
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc--hHHHHHHhcCCCceEEecC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGS 217 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~--~~~l~~~~~~g~~~~i~g~ 217 (520)
+......|+.||+..+.+.+.++.+ +|+++.++.||.+-.+..... .+...+......+.
T Consensus 151 ----------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~----- 215 (256)
T PRK07889 151 ----------AWPAYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAKAIPGFELLEEGWDERAPL----- 215 (256)
T ss_pred ----------cCCccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhhcccCcHHHHHHHHhcCcc-----
Confidence 1122457999999999888776543 689999999999876532211 01111111111110
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
.+.+...+|+|++++.++.. ......|+.+.+.++
T Consensus 216 ---~~~~~~p~evA~~v~~l~s~---~~~~~tG~~i~vdgg 250 (256)
T PRK07889 216 ---GWDVKDPTPVARAVVALLSD---WFPATTGEIVHVDGG 250 (256)
T ss_pred ---ccccCCHHHHHHHHHHHhCc---ccccccceEEEEcCc
Confidence 01356789999999988751 123456777777664
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-12 Score=127.21 Aligned_cols=219 Identities=12% Similarity=0.051 Sum_probs=143.0
Q ss_pred CCCCeEEEEcCCC--hhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCCCCCCCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatG--fIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~-~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
+++++++||||++ -||+++++.|.++| ++|++.++.. +... ...+... .+....+.+|++|++++++++
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G-~~vil~~r~~-----~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~ 75 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREG-AELAFTYQND-----KLKGRVEEFAAQ--LGSDIVLPCDVAEDASIDAMF 75 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCC-CEEEEEecch-----hHHHHHHHHHhc--cCCceEeecCCCCHHHHHHHH
Confidence 4568999999985 89999999999999 5888854321 0000 0011111 124567899999999888776
Q ss_pred c-------CCCEEEEcccCCC------------CCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCC
Q 010005 83 E-------GASTVFYVDATDL------------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSH 141 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~~------------~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~ 141 (520)
+ ++|++||+||... ...+++..+++|+.+...+.+++... +-.++|++||.+...
T Consensus 76 ~~~~~~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~---- 151 (262)
T PRK07984 76 AELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER---- 151 (262)
T ss_pred HHHHhhcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCC----
Confidence 4 3799999998621 11234567889999988888876532 124799999875420
Q ss_pred CCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc--hHHHHHHhcCCCceEEec
Q 010005 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIG 216 (520)
Q Consensus 142 ~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~--~~~l~~~~~~g~~~~i~g 216 (520)
+......|+.||...+.+.+.++.+ +|+++.++-||.+-.+..... ............
T Consensus 152 -----------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~------ 214 (262)
T PRK07984 152 -----------AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVT------ 214 (262)
T ss_pred -----------CCCCcchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHhcCCchHHHHHHHHHcC------
Confidence 1122458999999999998877643 689999999998865421110 111111111111
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
....+...+|++.++..++.. ......|+.+.+.++.
T Consensus 215 ---p~~r~~~pedva~~~~~L~s~---~~~~itG~~i~vdgg~ 251 (262)
T PRK07984 215 ---PIRRTVTIEDVGNSAAFLCSD---LSAGISGEVVHVDGGF 251 (262)
T ss_pred ---CCcCCCCHHHHHHHHHHHcCc---ccccccCcEEEECCCc
Confidence 112356789999999988751 1235677788777653
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-12 Score=128.32 Aligned_cols=219 Identities=12% Similarity=0.071 Sum_probs=143.9
Q ss_pred CCCeEEEEcCC--ChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 7 IPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 7 ~~~~ILVtGat--GfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
++|+++||||+ +-||..+++.|.++| ++|++.++... . ......+.+.+. .. ..+.+|++|.+++.++++
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G-~~Vil~~r~~~--~--~~~~~~~~~~~~-~~-~~~~~Dv~d~~~v~~~~~~ 76 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQG-AELAFTYLNEA--L--KKRVEPIAQELG-SD-YVYELDVSKPEHFKSLAES 76 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEEecCHH--H--HHHHHHHHHhcC-Cc-eEEEecCCCHHHHHHHHHH
Confidence 46899999997 799999999999999 58888554310 0 000001111111 12 578999999988877664
Q ss_pred ------CCCEEEEcccCCC-----------CCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCCCC
Q 010005 84 ------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 84 ------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
++|++||+||... ...+++..+++|+.++..+.+++... .-.++|++||.+...
T Consensus 77 i~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~~------- 149 (274)
T PRK08415 77 LKKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGVK------- 149 (274)
T ss_pred HHHHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCcc-------
Confidence 4799999999621 12345778999999999988877643 124899999865320
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchH--HHHHHhcCCCceEEecCCC
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP--LLVNLAKPGWTKFIIGSGE 219 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~--~l~~~~~~g~~~~i~g~g~ 219 (520)
+......|+.||+..+.+.+.++.+ +|+++.++.||.+..+....... ......... .
T Consensus 150 --------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~---------~ 212 (274)
T PRK08415 150 --------YVPHYNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASGIGDFRMILKWNEIN---------A 212 (274)
T ss_pred --------CCCcchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhccchhhHHhhhhhhh---------C
Confidence 1122457999999999888877643 68999999999987643211100 000000000 1
Q ss_pred cccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+..-+...+|+|.+++.++.. ......|+.+.+.++.
T Consensus 213 pl~r~~~pedva~~v~fL~s~---~~~~itG~~i~vdGG~ 249 (274)
T PRK08415 213 PLKKNVSIEEVGNSGMYLLSD---LSSGVTGEIHYVDAGY 249 (274)
T ss_pred chhccCCHHHHHHHHHHHhhh---hhhcccccEEEEcCcc
Confidence 112356789999999988761 1235678888887764
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.3e-12 Score=126.41 Aligned_cols=216 Identities=13% Similarity=0.063 Sum_probs=144.6
Q ss_pred CCCCeEEEEcCC--ChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC----CCCCCCCCCCCCcEEEEecCCCHHHHH
Q 010005 6 AIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES----NSLLPDSLSSGRAEYHQVDVRDISQIK 79 (520)
Q Consensus 6 ~~~~~ILVtGat--GfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~----~~~l~~~~~~~~v~~~~~Dl~d~~~l~ 79 (520)
+++++++||||+ +-||.++++.|.++| ++|++.+ |+.. ...+.+.+ .....+.+|+.|.++++
T Consensus 8 ~~~k~~lItGas~~~GIG~aia~~la~~G-~~V~l~~--------r~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~ 76 (272)
T PRK08159 8 MAGKRGLILGVANNRSIAWGIAKACRAAG-AELAFTY--------QGDALKKRVEPLAAEL--GAFVAGHCDVTDEASID 76 (272)
T ss_pred ccCCEEEEECCCCCCcHHHHHHHHHHHCC-CEEEEEc--------CchHHHHHHHHHHHhc--CCceEEecCCCCHHHHH
Confidence 345899999997 799999999999999 5888743 3211 00111111 23456899999998888
Q ss_pred HHHc-------CCCEEEEcccCCC-----------CCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccC
Q 010005 80 KVLE-------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDG 139 (520)
Q Consensus 80 ~~l~-------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~ 139 (520)
++++ +.|++||+||... ...++...+++|+.++.++++++... +-.++|++||.+...
T Consensus 77 ~~~~~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~-- 154 (272)
T PRK08159 77 AVFETLEKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAEK-- 154 (272)
T ss_pred HHHHHHHHhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEecccccc--
Confidence 7664 4799999998621 12356778999999999999987654 225899999864320
Q ss_pred CCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc--hHHHHHHhcCCCceEE
Q 010005 140 SHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFI 214 (520)
Q Consensus 140 ~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~--~~~l~~~~~~g~~~~i 214 (520)
+......|+.+|+..+.+.+.++.+ +|+++.++.||.+-.+..... ............
T Consensus 155 -------------~~p~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~---- 217 (272)
T PRK08159 155 -------------VMPHYNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNA---- 217 (272)
T ss_pred -------------CCCcchhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHhcCCcchHHHHHHHhCC----
Confidence 1123467999999999888776543 689999999998865421110 000000000011
Q ss_pred ecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+...+...+|+|++++.++.. ......|+.+.+.++.
T Consensus 218 -----p~~r~~~peevA~~~~~L~s~---~~~~itG~~i~vdgG~ 254 (272)
T PRK08159 218 -----PLRRTVTIEEVGDSALYLLSD---LSRGVTGEVHHVDSGY 254 (272)
T ss_pred -----cccccCCHHHHHHHHHHHhCc---cccCccceEEEECCCc
Confidence 112346789999999988861 1235678888888764
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.9e-12 Score=125.89 Aligned_cols=219 Identities=11% Similarity=0.026 Sum_probs=143.6
Q ss_pred CCCCeEEEEcC--CChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCCCCCCCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNG--RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGa--tGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~-~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
+++++++|||| ++-||.+++++|.++| ++|++.++. .|..+ ...+.+.. +....+.+|++|++++.+++
T Consensus 4 l~~k~vlItGas~~~GIG~a~a~~l~~~G-~~v~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~ 75 (260)
T PRK06997 4 LAGKRILITGLLSNRSIAYGIAKACKREG-AELAFTYVG-----DRFKDRITEFAAEF--GSDLVFPCDVASDEQIDALF 75 (260)
T ss_pred cCCcEEEEeCCCCCCcHHHHHHHHHHHCC-CeEEEEccc-----hHHHHHHHHHHHhc--CCcceeeccCCCHHHHHHHH
Confidence 45689999996 5799999999999999 588875432 11111 00111111 12346889999999888776
Q ss_pred c-------CCCEEEEcccCCC------------CCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCC
Q 010005 83 E-------GASTVFYVDATDL------------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSH 141 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~~------------~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~ 141 (520)
+ ++|++||+||... ...+++..+++|+.++..+.+++... +-.++|++||....-
T Consensus 76 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~~---- 151 (260)
T PRK06997 76 ASLGQHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAER---- 151 (260)
T ss_pred HHHHHHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEecccccc----
Confidence 4 4799999998721 11245567899999999998887653 235899999875420
Q ss_pred CCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCch--HHHHHHhcCCCceEEec
Q 010005 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIG 216 (520)
Q Consensus 142 ~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~--~~l~~~~~~g~~~~i~g 216 (520)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+-.+...... +...+......
T Consensus 152 -----------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~------ 214 (260)
T PRK06997 152 -----------VVPNYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASGIKDFGKILDFVESNA------ 214 (260)
T ss_pred -----------CCCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhccccchhhHHHHHHhcC------
Confidence 112345799999999988887654 36899999999988654221110 11111111111
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+...+...+|+++++..++.. ......|+++.+.++.
T Consensus 215 ---p~~r~~~pedva~~~~~l~s~---~~~~itG~~i~vdgg~ 251 (260)
T PRK06997 215 ---PLRRNVTIEEVGNVAAFLLSD---LASGVTGEITHVDSGF 251 (260)
T ss_pred ---cccccCCHHHHHHHHHHHhCc---cccCcceeEEEEcCCh
Confidence 112356789999999988761 1245677888776653
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-12 Score=130.08 Aligned_cols=196 Identities=13% Similarity=0.078 Sum_probs=129.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCC--HHH---HHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD--ISQ---IKKV 81 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d--~~~---l~~~ 81 (520)
.+++++||||+|.||++++++|.++| ++|++++++... +.. ....+.+.....++..+.+|+.+ .+. +.+.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G-~~Vil~~R~~~~-l~~--~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~ 127 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKG-LNLVLVARNPDK-LKD--VSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKET 127 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCC-CCEEEEECCHHH-HHH--HHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHH
Confidence 36899999999999999999999999 589985443210 000 00011111112356778899985 333 3344
Q ss_pred HcC--CCEEEEcccCCC---------CCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCC
Q 010005 82 LEG--ASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 82 l~~--~D~Vih~aa~~~---------~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
+.+ +|++||+||... +..+.+..+++|+.|+.++.+++. +.+..++|++||...+...
T Consensus 128 ~~~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~------- 200 (320)
T PLN02780 128 IEGLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIP------- 200 (320)
T ss_pred hcCCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCC-------
Confidence 444 569999998721 122345689999999999888864 4456799999998764200
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
+......|+.||+..+.+.+.++.+ .|++++++.||.+-.+... .... . ..
T Consensus 201 ------~~p~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~~~~---------~~~~---------~--~~ 254 (320)
T PLN02780 201 ------SDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMAS---------IRRS---------S--FL 254 (320)
T ss_pred ------CCccchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecCccc---------ccCC---------C--CC
Confidence 0112578999999999988776543 5899999999988654211 0000 0 11
Q ss_pred cccHHHHHHHHHHHHH
Q 010005 224 FTYVENVAHAHVCAAE 239 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~ 239 (520)
....+++|+.++..+.
T Consensus 255 ~~~p~~~A~~~~~~~~ 270 (320)
T PLN02780 255 VPSSDGYARAALRWVG 270 (320)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 2457888998887765
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-12 Score=140.78 Aligned_cols=214 Identities=19% Similarity=0.156 Sum_probs=143.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
++++++||||++.||.++++.|.++| ++|++++ |+.+. ..+...+ ..++..+.+|++|++++.++++
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G-~~V~~~~--------r~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~ 73 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAG-DQVVVAD--------RNVERARERADSL-GPDHHALAMDVSDEAQIREGFEQL 73 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCC-CEEEEEe--------CCHHHHHHHHHHh-CCceeEEEeccCCHHHHHHHHHHH
Confidence 46899999999999999999999999 5999844 33221 0011111 2346779999999988877764
Q ss_pred -----CCCEEEEcccCC---------CCCcchhhHHhhhHHHHHHHHHHHHHC----CC-CEEEEeecccccccCCCCCC
Q 010005 84 -----GASTVFYVDATD---------LNTDDFYNCYMIIVQGAKNVVTACREC----KV-RRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 84 -----~~D~Vih~aa~~---------~~~~~~~~~~~~Nv~gt~~ll~aa~~~----gv-kr~V~~SS~~vyg~~~~~~~ 144 (520)
++|++||+||.. ....+++..+++|+.++.++.+++... +- .++|++||.....
T Consensus 74 ~~~~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~------- 146 (520)
T PRK06484 74 HREFGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLV------- 146 (520)
T ss_pred HHHhCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCC-------
Confidence 489999999861 123456789999999999999888653 33 3899999976542
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHH--H-HHHhcCCCceEEecCC
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPL--L-VNLAKPGWTKFIIGSG 218 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~--l-~~~~~~g~~~~i~g~g 218 (520)
+......|+.+|+..+.+.+.++.+ .+++++++.|+.+-.+........ . ....... +
T Consensus 147 --------~~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~----~---- 210 (520)
T PRK06484 147 --------ALPKRTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQMVAELERAGKLDPSAVRSR----I---- 210 (520)
T ss_pred --------CCCCCchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchhhhhhcccchhhhHHHHhc----C----
Confidence 1123468999999999988876554 589999999998866532111000 0 0000000 0
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeC
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~ 257 (520)
....+...+|+++++..++... .....|+.+.+.+
T Consensus 211 -~~~~~~~~~~va~~v~~l~~~~---~~~~~G~~~~~~g 245 (520)
T PRK06484 211 -PLGRLGRPEEIAEAVFFLASDQ---ASYITGSTLVVDG 245 (520)
T ss_pred -CCCCCcCHHHHHHHHHHHhCcc---ccCccCceEEecC
Confidence 1113456899999998877521 1234555555544
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-12 Score=126.80 Aligned_cols=197 Identities=13% Similarity=0.103 Sum_probs=131.2
Q ss_pred eEEEEcCCChhHHHHHHHHHh----cCCcEEEEecCCcccccCCCCCC-----CCCCCCCCCCCcEEEEecCCCHHHHHH
Q 010005 10 TCVVLNGRGFVGRSLVLRLLE----LGKCIVRVTDSTQSLQLDPSESN-----SLLPDSLSSGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~----~g~~~V~~~D~~~~~~l~r~~~~-----~~l~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (520)
.++||||+|.||.+++++|.+ .| ++|++++ |+... ..+.......++..+.+|+.|.+++.+
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g-~~V~~~~--------r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~ 72 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPG-SVLVLSA--------RNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQ 72 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCC-cEEEEEE--------cCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHH
Confidence 589999999999999999997 68 5888844 33221 011111112357889999999988877
Q ss_pred HHcC-----------CCEEEEcccCC-C---------CCcchhhHHhhhHHHHHHHHHHHHHC-----C-CCEEEEeecc
Q 010005 81 VLEG-----------ASTVFYVDATD-L---------NTDDFYNCYMIIVQGAKNVVTACREC-----K-VRRLVYNSTA 133 (520)
Q Consensus 81 ~l~~-----------~D~Vih~aa~~-~---------~~~~~~~~~~~Nv~gt~~ll~aa~~~-----g-vkr~V~~SS~ 133 (520)
+++. .|+|||+||.. . ...+.+..+++|+.++..+.+++... + -.++|++||.
T Consensus 73 ~~~~~~~~~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~ 152 (256)
T TIGR01500 73 LLKALRELPRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSL 152 (256)
T ss_pred HHHHHHhccccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCH
Confidence 6642 25899999861 1 11345678999999998887766432 2 2589999998
Q ss_pred cccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch-----HHHHHH
Q 010005 134 DVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-----PLLVNL 205 (520)
Q Consensus 134 ~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~-----~~l~~~ 205 (520)
..+. +......|+.+|+..+.+.+.++.+ .|+.+.++.||.+-.+...... +.....
T Consensus 153 ~~~~---------------~~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~ 217 (256)
T TIGR01500 153 CAIQ---------------PFKGWALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTDMQQQVREESVDPDMRKG 217 (256)
T ss_pred HhCC---------------CCCCchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHhcCChhHHHH
Confidence 6541 1223568999999999998876543 6899999999988654211100 000011
Q ss_pred hcCCCceEEecCCCcccccccHHHHHHHHHHHHH
Q 010005 206 AKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 206 ~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~ 239 (520)
.... .....+...+|+|.+++.+++
T Consensus 218 ~~~~---------~~~~~~~~p~eva~~~~~l~~ 242 (256)
T TIGR01500 218 LQEL---------KAKGKLVDPKVSAQKLLSLLE 242 (256)
T ss_pred HHHH---------HhcCCCCCHHHHHHHHHHHHh
Confidence 1100 011235679999999999886
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >KOG4288 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-12 Score=118.59 Aligned_cols=218 Identities=19% Similarity=0.098 Sum_probs=156.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCEE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~V 88 (520)
.+.++.|+.||.|+++++.-...+| +|.. +.|++.+..+..+. ..+.++.+|.....-+...+.++..|
T Consensus 53 e~tlvlggnpfsgs~vlk~A~~vv~-svgi--------lsen~~k~~l~sw~--~~vswh~gnsfssn~~k~~l~g~t~v 121 (283)
T KOG4288|consen 53 EWTLVLGGNPFSGSEVLKNATNVVH-SVGI--------LSENENKQTLSSWP--TYVSWHRGNSFSSNPNKLKLSGPTFV 121 (283)
T ss_pred HHHhhhcCCCcchHHHHHHHHhhce-eeeE--------eecccCcchhhCCC--cccchhhccccccCcchhhhcCCccc
Confidence 4789999999999999999999996 8888 77776654444332 46788888887766677788899999
Q ss_pred EEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHH
Q 010005 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAE 168 (520)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E 168 (520)
+-|++.. .+...+.++|-....+-.+++.+.||+||+|+|-.. ||.. +.-| ..|-.+|.++|
T Consensus 122 ~e~~ggf---gn~~~m~~ing~ani~a~kaa~~~gv~~fvyISa~d-~~~~-------------~~i~-rGY~~gKR~AE 183 (283)
T KOG4288|consen 122 YEMMGGF---GNIILMDRINGTANINAVKAAAKAGVPRFVYISAHD-FGLP-------------PLIP-RGYIEGKREAE 183 (283)
T ss_pred HHHhcCc---cchHHHHHhccHhhHHHHHHHHHcCCceEEEEEhhh-cCCC-------------Cccc-hhhhccchHHH
Confidence 9888753 345678889999999999999999999999999543 3211 2233 37999999999
Q ss_pred HHHHHhcCCCCceEEEEecCccccCCCC-------CchHHHHHHhcCCCc--e-EEecCCCcccccccHHHHHHHHHHHH
Q 010005 169 ALVLFANNIDGLLTCALRPSNVFGPGDT-------QLVPLLVNLAKPGWT--K-FIIGSGENMSDFTYVENVAHAHVCAA 238 (520)
Q Consensus 169 ~~~~~~~~~~gi~~~ilRp~~vyGp~~~-------~~~~~l~~~~~~g~~--~-~i~g~g~~~~~~i~v~Dva~ai~~~~ 238 (520)
..+.+. ++.+-+++|||.+||.+.- ..+...+.++.++-+ . .++--|.-..+.+.++++|.+.+.++
T Consensus 184 ~Ell~~---~~~rgiilRPGFiyg~R~v~g~~~pL~~vg~pl~~~~~~a~k~~~kLp~lg~l~~ppvnve~VA~aal~ai 260 (283)
T KOG4288|consen 184 AELLKK---FRFRGIILRPGFIYGTRNVGGIKSPLHTVGEPLEMVLKFALKPLNKLPLLGPLLAPPVNVESVALAALKAI 260 (283)
T ss_pred HHHHHh---cCCCceeeccceeecccccCcccccHHhhhhhHHHHHHhhhchhhcCcccccccCCCcCHHHHHHHHHHhc
Confidence 988875 4567789999999998542 112222223222221 0 12334567789999999999999888
Q ss_pred HhhhcccccCCCceEEEeCCCCcCHHHHHHHHHH
Q 010005 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILE 272 (520)
Q Consensus 239 ~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~ 272 (520)
+ .+... ..+++.|+.++..+
T Consensus 261 ~-----dp~f~---------Gvv~i~eI~~~a~k 280 (283)
T KOG4288|consen 261 E-----DPDFK---------GVVTIEEIKKAAHK 280 (283)
T ss_pred c-----CCCcC---------ceeeHHHHHHHHHH
Confidence 7 34333 24566666655443
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.9e-12 Score=127.80 Aligned_cols=178 Identities=12% Similarity=0.021 Sum_probs=118.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
|+++++||||++.||.++++.|.++|.++|++++ |+..+. ...+.+ ....+..+.+|++|.+++.++++
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~--------r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~ 73 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMAC--------RDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQ 73 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEe--------CCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHH
Confidence 4679999999999999999999999933888844 332210 000111 12356788999999988776653
Q ss_pred -------CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHHH----HCC--CCEEEEeecccccccCCCC
Q 010005 84 -------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACR----ECK--VRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 84 -------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa~----~~g--vkr~V~~SS~~vyg~~~~~ 142 (520)
+.|++||+||... ....++..+++|+.++..+.+++. +.+ ..|+|++||...+......
T Consensus 74 ~~~~~~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~ 153 (314)
T TIGR01289 74 QFRESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAG 153 (314)
T ss_pred HHHHhCCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCC
Confidence 4899999999621 123456789999999888866653 332 3699999999876421100
Q ss_pred CC--CCCCC----------------ccCCCCCCChHHHHHHHHHHHHHHhcC----CCCceEEEEecCcccc
Q 010005 143 IH--NGDET----------------LTCCWKFQDLMCDLKAQAEALVLFANN----IDGLLTCALRPSNVFG 192 (520)
Q Consensus 143 ~~--~~~E~----------------~~~~~~p~~~Y~~sK~~~E~~~~~~~~----~~gi~~~ilRp~~vyG 192 (520)
.. +.+.+ ...+..+...|+.||+....+.+.++. ..|+.+++++||.|..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~ 225 (314)
T TIGR01289 154 NVPPKANLGDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIAD 225 (314)
T ss_pred cCCCcccccccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccC
Confidence 00 00000 001234567899999997776666543 2579999999999863
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.8e-11 Score=122.67 Aligned_cols=205 Identities=23% Similarity=0.234 Sum_probs=126.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC--CCCCCCCCCCcEEEEecCCCHHHH-HHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS--LLPDSLSSGRAEYHQVDVRDISQI-KKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~--~l~~~~~~~~v~~~~~Dl~d~~~l-~~~l 82 (520)
.+++.|+|+||+|.+|+-+++.|+++| +.|++ +.|+.++. .+.......+...+..|.....+. ..+.
T Consensus 77 ~~~~~VlVvGatG~vG~~iv~~llkrg-f~vra--------~VRd~~~a~~~~~~~~~d~~~~~v~~~~~~~~d~~~~~~ 147 (411)
T KOG1203|consen 77 KKPTTVLVVGATGKVGRRIVKILLKRG-FSVRA--------LVRDEQKAEDLLGVFFVDLGLQNVEADVVTAIDILKKLV 147 (411)
T ss_pred CCCCeEEEecCCCchhHHHHHHHHHCC-Ceeee--------eccChhhhhhhhcccccccccceeeeccccccchhhhhh
Confidence 456899999999999999999999999 69999 77775521 111122244566666666554332 2333
Q ss_pred c----CCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCC
Q 010005 83 E----GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQD 158 (520)
Q Consensus 83 ~----~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~ 158 (520)
+ +..+|+-+++......+-..-..+...|++|+++||+.+|++|+|++||.+.- . .+...+ ......
T Consensus 148 ~~~~~~~~~v~~~~ggrp~~ed~~~p~~VD~~g~knlvdA~~~aGvk~~vlv~si~~~---~-----~~~~~~-~~~~~~ 218 (411)
T KOG1203|consen 148 EAVPKGVVIVIKGAGGRPEEEDIVTPEKVDYEGTKNLVDACKKAGVKRVVLVGSIGGT---K-----FNQPPN-ILLLNG 218 (411)
T ss_pred hhccccceeEEecccCCCCcccCCCcceecHHHHHHHHHHHHHhCCceEEEEEeecCc---c-----cCCCch-hhhhhh
Confidence 3 23466666655332222334457889999999999999999999999887652 1 111100 001123
Q ss_pred hHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHH
Q 010005 159 LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238 (520)
Q Consensus 159 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~ 238 (520)
.+-.+|..+|+++.+ .|++++|+|++...-...... + ......+-...+++. --.+.-.|+|+..++++
T Consensus 219 ~~~~~k~~~e~~~~~----Sgl~ytiIR~g~~~~~~~~~~-~----~~~~~~~~~~~~~~~--~~~i~r~~vael~~~al 287 (411)
T KOG1203|consen 219 LVLKAKLKAEKFLQD----SGLPYTIIRPGGLEQDTGGQR-E----VVVDDEKELLTVDGG--AYSISRLDVAELVAKAL 287 (411)
T ss_pred hhhHHHHhHHHHHHh----cCCCcEEEeccccccCCCCcc-e----ecccCcccccccccc--ceeeehhhHHHHHHHHH
Confidence 444778888888875 799999999998764322100 0 000000001111111 12455789999999888
Q ss_pred H
Q 010005 239 E 239 (520)
Q Consensus 239 ~ 239 (520)
.
T Consensus 288 l 288 (411)
T KOG1203|consen 288 L 288 (411)
T ss_pred h
Confidence 7
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-11 Score=119.43 Aligned_cols=205 Identities=13% Similarity=0.014 Sum_probs=136.6
Q ss_pred HHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc----CCCEEEEcccCCCCCc
Q 010005 24 LVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE----GASTVFYVDATDLNTD 99 (520)
Q Consensus 24 lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~----~~D~Vih~aa~~~~~~ 99 (520)
++++|+++| ++|+++| |+..+. ...+++++|++|.+++.++++ ++|+|||+||... ..
T Consensus 1 ~a~~l~~~G-~~Vv~~~--------r~~~~~--------~~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~-~~ 62 (241)
T PRK12428 1 TARLLRFLG-ARVIGVD--------RREPGM--------TLDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPG-TA 62 (241)
T ss_pred ChHHHHhCC-CEEEEEe--------CCcchh--------hhhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCC-CC
Confidence 478899999 5999854 433211 013568999999999988886 4899999999742 35
Q ss_pred chhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCCCCCCCCC----------c----cCCCCCCChHHHH
Q 010005 100 DFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDET----------L----TCCWKFQDLMCDL 163 (520)
Q Consensus 100 ~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~~~~~~E~----------~----~~~~~p~~~Y~~s 163 (520)
+++..+++|+.++..+++++... +-.++|++||...|+.... .+..|+ . ..+..+...|+.|
T Consensus 63 ~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~s 140 (241)
T PRK12428 63 PVELVARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQR--LELHKALAATASFDEGAAWLAAHPVALATGYQLS 140 (241)
T ss_pred CHHHhhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhccccc--hHHHHhhhccchHHHHHHhhhccCCCcccHHHHH
Confidence 68889999999999999999764 2359999999998853211 111110 0 0133456789999
Q ss_pred HHHHHHHHHHhc----CCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHH
Q 010005 164 KAQAEALVLFAN----NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 164 K~~~E~~~~~~~----~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~ 239 (520)
|+..+.+.+.++ ..+|+++.+++||.+.++......+..-..... +. ......+...+|+|++++.++.
T Consensus 141 K~a~~~~~~~la~~e~~~~girvn~v~PG~v~T~~~~~~~~~~~~~~~~-~~------~~~~~~~~~pe~va~~~~~l~s 213 (241)
T PRK12428 141 KEALILWTMRQAQPWFGARGIRVNCVAPGPVFTPILGDFRSMLGQERVD-SD------AKRMGRPATADEQAAVLVFLCS 213 (241)
T ss_pred HHHHHHHHHHHHHHhhhccCeEEEEeecCCccCcccccchhhhhhHhhh-hc------ccccCCCCCHHHHHHHHHHHcC
Confidence 999999887776 456999999999999987533211100000000 00 0112235668999999998764
Q ss_pred hhhcccccCCCceEEEeCC
Q 010005 240 ALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 240 ~~~~~~~~~~g~~yni~~~ 258 (520)
. ......|+...+.++
T Consensus 214 ~---~~~~~~G~~i~vdgg 229 (241)
T PRK12428 214 D---AARWINGVNLPVDGG 229 (241)
T ss_pred h---hhcCccCcEEEecCc
Confidence 1 123456776666654
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.5e-12 Score=111.07 Aligned_cols=160 Identities=19% Similarity=0.178 Sum_probs=124.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcE-EEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCI-VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~-V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
+++|..+|.||||-.|+.+++++++.+.+. |++ +.|.+. ...-..+.+.....|....+++...++|
T Consensus 16 mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~--------i~RR~~----~d~at~k~v~q~~vDf~Kl~~~a~~~qg 83 (238)
T KOG4039|consen 16 MQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYA--------ILRREL----PDPATDKVVAQVEVDFSKLSQLATNEQG 83 (238)
T ss_pred hhccceEEEeccccccHHHHHHHHhcccceeEEE--------EEeccC----CCccccceeeeEEechHHHHHHHhhhcC
Confidence 467899999999999999999999998654 777 344321 1112335677888998888889999999
Q ss_pred CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHH
Q 010005 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (520)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK 164 (520)
+|+.|-+-|........+..+++...-...++++|++-|||+|+..||.++ .....-.|-..|
T Consensus 84 ~dV~FcaLgTTRgkaGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GA-----------------d~sSrFlY~k~K 146 (238)
T KOG4039|consen 84 PDVLFCALGTTRGKAGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGA-----------------DPSSRFLYMKMK 146 (238)
T ss_pred CceEEEeecccccccccCceEeechHHHHHHHHHHHhCCCeEEEEEeccCC-----------------Ccccceeeeecc
Confidence 999998877632223355677888888889999999999999999999876 223355799999
Q ss_pred HHHHHHHHHhcCCCCceEEEEecCccccCCCCC
Q 010005 165 AQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ 197 (520)
Q Consensus 165 ~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~ 197 (520)
-+.|+.+..+.=+ .++|+|||.+.|.+...
T Consensus 147 GEvE~~v~eL~F~---~~~i~RPG~ll~~R~es 176 (238)
T KOG4039|consen 147 GEVERDVIELDFK---HIIILRPGPLLGERTES 176 (238)
T ss_pred chhhhhhhhcccc---EEEEecCcceecccccc
Confidence 9999999887432 48999999999987654
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.5e-11 Score=118.25 Aligned_cols=186 Identities=16% Similarity=0.076 Sum_probs=124.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC---CCCCcEEEEecCCCHHHHHHHHc-
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL---SSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~---~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
|+++||||++-||.+++++|. +| ++|+++ .|+.++ ..+.+.+ ....+..+.+|+.|.+++.++++
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g-~~Vil~--------~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 70 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HG-EDVVLA--------ARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQ 70 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CC-CEEEEE--------eCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHH
Confidence 579999999999999999998 58 688884 443321 0010111 11246789999999988776653
Q ss_pred ------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHH----HHCC-CCEEEEeecccccccCCCCCCC
Q 010005 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECK-VRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa----~~~g-vkr~V~~SS~~vyg~~~~~~~~ 145 (520)
+.|++||+||... ...+.....++|+.+..+++.++ ++.+ -.++|++||...+-
T Consensus 71 ~~~~~g~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~-------- 142 (246)
T PRK05599 71 TQELAGEISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWR-------- 142 (246)
T ss_pred HHHhcCCCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEecccccc--------
Confidence 4799999998721 11123345677888877665443 4433 35899999976431
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
+......|+.+|+..+.+.+.++.+ .|++++++.||.+..+.... ..+ . ..
T Consensus 143 -------~~~~~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~~~~~-----------~~~----~---~~- 196 (246)
T PRK05599 143 -------ARRANYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGSMTTG-----------MKP----A---PM- 196 (246)
T ss_pred -------CCcCCcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccchhhcC-----------CCC----C---CC-
Confidence 1123468999999998887766543 68999999999887542110 000 0 00
Q ss_pred ccccHHHHHHHHHHHHH
Q 010005 223 DFTYVENVAHAHVCAAE 239 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~ 239 (520)
....+|+|++++.+++
T Consensus 197 -~~~pe~~a~~~~~~~~ 212 (246)
T PRK05599 197 -SVYPRDVAAAVVSAIT 212 (246)
T ss_pred -CCCHHHHHHHHHHHHh
Confidence 1458999999999888
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.8e-12 Score=121.11 Aligned_cols=152 Identities=15% Similarity=0.090 Sum_probs=109.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-C-CCCCCCCCCCCcEEEEecCCCHHHHHHHH-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-N-SLLPDSLSSGRAEYHQVDVRDISQIKKVL- 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~-~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l- 82 (520)
..+|.|+||||+.-||.+++..|.++|. .++.+.+ ..|..+ . .++.+.....++..+++|++|.+++.+++
T Consensus 10 ~~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar-----~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~ 83 (282)
T KOG1205|consen 10 LAGKVVLITGASSGIGEALAYELAKRGA-KLVLVAR-----RARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVE 83 (282)
T ss_pred hCCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeeh-----hhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHH
Confidence 4578999999999999999999999995 5444221 112111 0 12222222236899999999999888665
Q ss_pred ------cCCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCC
Q 010005 83 ------EGASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 83 ------~~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
.++|+.||.||. .....+....+++|+.|+..+.+++- +.+-.|+|.+||..-+-
T Consensus 84 ~~~~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~-------- 155 (282)
T KOG1205|consen 84 WAIRHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKM-------- 155 (282)
T ss_pred HHHHhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEecccccc--------
Confidence 369999999998 23334556789999999998888874 44446999999987541
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCCC
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNID 178 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~ 178 (520)
+....+.|..||.+.+.+...+..+.
T Consensus 156 -------~~P~~~~Y~ASK~Al~~f~etLR~El 181 (282)
T KOG1205|consen 156 -------PLPFRSIYSASKHALEGFFETLRQEL 181 (282)
T ss_pred -------CCCcccccchHHHHHHHHHHHHHHHh
Confidence 22223489999999999988776554
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.2e-11 Score=114.02 Aligned_cols=161 Identities=9% Similarity=0.025 Sum_probs=112.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++++++||||++-||.++++.|.++| ++|++.+ |+..+. ...+.. ...++..+.+|+.|++++.+++
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G-~~V~~~~--------r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~ 73 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLG-ATLILCD--------QDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLF 73 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCC-CEEEEEc--------CCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHH
Confidence 356899999999999999999999999 5888844 433210 000000 1234677889999998887665
Q ss_pred c--------CCCEEEEcccCC--------CCCcchhhHHhhhHHHHHHHHHHH----HHCC-CCEEEEeecccccccCCC
Q 010005 83 E--------GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTAC----RECK-VRRLVYNSTADVVFDGSH 141 (520)
Q Consensus 83 ~--------~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~g-vkr~V~~SS~~vyg~~~~ 141 (520)
+ ++|++||+||.. ....++...+++|+.++..+.+++ ++.+ -.++|++||...+
T Consensus 74 ~~~~~~~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~----- 148 (227)
T PRK08862 74 DAIEQQFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDH----- 148 (227)
T ss_pred HHHHHHhCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCC-----
Confidence 3 589999999741 111234456677888877665544 3333 3589999985421
Q ss_pred CCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccC
Q 010005 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGP 193 (520)
Q Consensus 142 ~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp 193 (520)
.+...|+.+|+..+.+.+.++. .+|+++.++.||.+-.+
T Consensus 149 -------------~~~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~ 190 (227)
T PRK08862 149 -------------QDLTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSAN 190 (227)
T ss_pred -------------CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCC
Confidence 1245799999999988877654 36899999999987655
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.1e-12 Score=115.73 Aligned_cols=145 Identities=17% Similarity=0.136 Sum_probs=109.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCC---CCCCCCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPS---ESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~---~~~~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
|+++||||+|-||..++++|+++|.+.|+++ .|+ +....+...+ ...++.++++|++|.++++++++
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~--------~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILT--------SRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIE 72 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEE--------ESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEe--------eeccccccccccccccccccccccccccccccccccccccc
Confidence 5799999999999999999999965677773 444 1101111111 12567899999999988887765
Q ss_pred -------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCC
Q 010005 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDET 149 (520)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~ 149 (520)
..|++||+|+... ...+....+++|+.+...+.+++...+-.++|++||....-
T Consensus 73 ~~~~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~g~iv~~sS~~~~~------------ 140 (167)
T PF00106_consen 73 EVIKRFGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQGGGKIVNISSIAGVR------------ 140 (167)
T ss_dssp HHHHHHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHTTEEEEEEEEGGGTS------------
T ss_pred ccccccccccccccccccccccccccccchhhhhccccccceeeeeeehheeccccceEEecchhhcc------------
Confidence 4799999999822 22455679999999999999999886567999999987641
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHhcC
Q 010005 150 LTCCWKFQDLMCDLKAQAEALVLFANN 176 (520)
Q Consensus 150 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~ 176 (520)
+......|+.+|+..+.+.+.++.
T Consensus 141 ---~~~~~~~Y~askaal~~~~~~la~ 164 (167)
T PF00106_consen 141 ---GSPGMSAYSASKAALRGLTQSLAA 164 (167)
T ss_dssp ---SSTTBHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCChhHHHHHHHHHHHHHHHHH
Confidence 223456899999999999988764
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.3e-10 Score=102.66 Aligned_cols=217 Identities=15% Similarity=0.117 Sum_probs=151.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
+.+.++||||+.-||++++..|.+.| .+|.+.|++. ...+..-.......+-..+.||+.+..+++..++
T Consensus 13 ~sk~~~vtGg~sGIGrAia~~la~~G-arv~v~dl~~------~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~ 85 (256)
T KOG1200|consen 13 MSKVAAVTGGSSGIGRAIAQLLAKKG-ARVAVADLDS------AAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEME 85 (256)
T ss_pred hcceeEEecCCchHHHHHHHHHHhcC-cEEEEeecch------hhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHH
Confidence 45789999999999999999999999 6988877543 2111111111111345678999999887776554
Q ss_pred ----CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHHHC----CC--CEEEEeecccccccCCCCCCCC
Q 010005 84 ----GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACREC----KV--RRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 ----~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~~~----gv--kr~V~~SS~~vyg~~~~~~~~~ 146 (520)
.++++++|||+ .....+++..+.+|..|+..+.+++.+. +. -++|.+||.- |.-
T Consensus 86 k~~g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIV--Gki------- 156 (256)
T KOG1200|consen 86 KSLGTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIV--GKI------- 156 (256)
T ss_pred HhcCCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhh--ccc-------
Confidence 47999999999 2456789999999999999888887654 22 2899999863 211
Q ss_pred CCCccCCCCCCChHHHHHHH----HHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQ----AEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~----~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
..-..+.|+.+|.- .....++.++ .++++..+-|+.|-.|.....-+...+.+...-|.-.+|+
T Consensus 157 ------GN~GQtnYAAsK~GvIgftktaArEla~-knIrvN~VlPGFI~tpMT~~mp~~v~~ki~~~iPmgr~G~----- 224 (256)
T KOG1200|consen 157 ------GNFGQTNYAASKGGVIGFTKTAARELAR-KNIRVNVVLPGFIATPMTEAMPPKVLDKILGMIPMGRLGE----- 224 (256)
T ss_pred ------ccccchhhhhhcCceeeeeHHHHHHHhh-cCceEeEeccccccChhhhhcCHHHHHHHHccCCccccCC-----
Confidence 11224567766653 2223334443 5899999999999988877777778888877766555554
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
.+|+|..+..+.-- ......|..+.++++
T Consensus 225 ----~EevA~~V~fLAS~---~ssYiTG~t~evtGG 253 (256)
T KOG1200|consen 225 ----AEEVANLVLFLASD---ASSYITGTTLEVTGG 253 (256)
T ss_pred ----HHHHHHHHHHHhcc---ccccccceeEEEecc
Confidence 89999998877641 124567788888775
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.25 E-value=5e-11 Score=120.12 Aligned_cols=173 Identities=12% Similarity=0.042 Sum_probs=112.8
Q ss_pred EEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHHc-----
Q 010005 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE----- 83 (520)
Q Consensus 12 LVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~----- 83 (520)
+||||++.||.++++.|.++|+++|++. .|+..+. .....+ ...++..+.+|+.|.+++.++++
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~--------~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 72 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMA--------CRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRS 72 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEE--------eCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhc
Confidence 5999999999999999999994488884 3432210 000111 12357788999999988877664
Q ss_pred --CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHH----HHCC--CCEEEEeecccccccCC-CCCCC-
Q 010005 84 --GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTAC----RECK--VRRLVYNSTADVVFDGS-HDIHN- 145 (520)
Q Consensus 84 --~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa----~~~g--vkr~V~~SS~~vyg~~~-~~~~~- 145 (520)
++|++||+||... ...+++..+++|+.|+.++.+++ ++.+ ..|+|++||...+-... ....+
T Consensus 73 ~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~ 152 (308)
T PLN00015 73 GRPLDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPK 152 (308)
T ss_pred CCCCCEEEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCc
Confidence 4799999998721 12355678999999988776654 3343 46999999986541100 00000
Q ss_pred ------------C-CCCc-----cCCCCCCChHHHHHHHHHHHHHHhcCC----CCceEEEEecCcccc
Q 010005 146 ------------G-DETL-----TCCWKFQDLMCDLKAQAEALVLFANNI----DGLLTCALRPSNVFG 192 (520)
Q Consensus 146 ------------~-~E~~-----~~~~~p~~~Y~~sK~~~E~~~~~~~~~----~gi~~~ilRp~~vyG 192 (520)
. +++. ..+..+...|+.||+..+.+.+.++.+ .|+.++++.||.|..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~ 221 (308)
T PLN00015 153 ANLGDLRGLAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIAT 221 (308)
T ss_pred cchhhhhhhhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccC
Confidence 0 0000 001234567999999866665555432 589999999999964
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=99.25 E-value=4e-10 Score=112.69 Aligned_cols=224 Identities=9% Similarity=0.004 Sum_probs=138.3
Q ss_pred CCCCeEEEEcC--CChhHHHHHHHHHhcCCcEEEEecCCcccccCC---CCCCCCCCC--CCCC----CCcEEEEecC--
Q 010005 6 AIPRTCVVLNG--RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDP---SESNSLLPD--SLSS----GRAEYHQVDV-- 72 (520)
Q Consensus 6 ~~~~~ILVtGa--tGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r---~~~~~~l~~--~~~~----~~v~~~~~Dl-- 72 (520)
.++|++||||| +.-||.++++.|.++| .+|++ .+.... +.. ......+.+ .... .....+.+|+
T Consensus 7 l~gk~alITGa~~s~GIG~a~A~~la~~G-a~Vv~-~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 83 (303)
T PLN02730 7 LRGKRAFIAGVADDNGYGWAIAKALAAAG-AEILV-GTWVPA-LNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVF 83 (303)
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHHHCC-CEEEE-EeCcch-hhHHHHhhhccccchhhhcccccccCcCeeeecceec
Confidence 56899999999 7999999999999999 48776 221000 000 000000000 0010 1135678888
Q ss_pred CCH------------------HHHHHHHc-------CCCEEEEcccC---------CCCCcchhhHHhhhHHHHHHHHHH
Q 010005 73 RDI------------------SQIKKVLE-------GASTVFYVDAT---------DLNTDDFYNCYMIIVQGAKNVVTA 118 (520)
Q Consensus 73 ~d~------------------~~l~~~l~-------~~D~Vih~aa~---------~~~~~~~~~~~~~Nv~gt~~ll~a 118 (520)
.+. +++.++++ ++|++||+||. ..+..++..++++|+.++..+.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~ 163 (303)
T PLN02730 84 DTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQH 163 (303)
T ss_pred CccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHH
Confidence 322 24444443 48999999963 123357788999999999999888
Q ss_pred HHHC--CCCEEEEeecccccccCCCCCCCCCCCccCCCCCC-ChHHHHHHHHHHHHHHhcCC----CCceEEEEecCccc
Q 010005 119 CREC--KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQ-DLMCDLKAQAEALVLFANNI----DGLLTCALRPSNVF 191 (520)
Q Consensus 119 a~~~--gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~-~~Y~~sK~~~E~~~~~~~~~----~gi~~~ilRp~~vy 191 (520)
+... .-.++|++||..... +.... ..|+.||+..+.+.+.++.+ +|+++.++-||.+-
T Consensus 164 ~~p~m~~~G~II~isS~a~~~---------------~~p~~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~PG~v~ 228 (303)
T PLN02730 164 FGPIMNPGGASISLTYIASER---------------IIPGYGGGMSSAKAALESDTRVLAFEAGRKYKIRVNTISAGPLG 228 (303)
T ss_pred HHHHHhcCCEEEEEechhhcC---------------CCCCCchhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEeeCCcc
Confidence 7553 115899999976531 11112 37999999999988877542 58999999999887
Q ss_pred cCCCCCc--hHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 192 GPGDTQL--VPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 192 Gp~~~~~--~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.+..... .+.......... ....+...+|++.+++.++.. ......|+.+.+.++.
T Consensus 229 T~~~~~~~~~~~~~~~~~~~~---------pl~r~~~peevA~~~~fLaS~---~a~~itG~~l~vdGG~ 286 (303)
T PLN02730 229 SRAAKAIGFIDDMIEYSYANA---------PLQKELTADEVGNAAAFLASP---LASAITGATIYVDNGL 286 (303)
T ss_pred CchhhcccccHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCc---cccCccCCEEEECCCc
Confidence 6532211 111111111111 112345689999999988751 1234577777776653
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-10 Score=117.57 Aligned_cols=175 Identities=14% Similarity=0.102 Sum_probs=116.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccc---cCCCCCCCCCCCCCC--CCCcEEEEecCCCHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQ---LDPSESNSLLPDSLS--SGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~---l~r~~~~~~l~~~~~--~~~v~~~~~Dl~d~~~l~~ 80 (520)
+++|+++||||++-||.++++.|++.| ++|++.++..... ..+........+.+. ..++..+.+|+.|++++.+
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~ 84 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAG-ATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRA 84 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 457899999999999999999999999 5998865432100 000000000011111 1246778999999988876
Q ss_pred HHc-------CCCEEEEcc-cCC-----------CCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccc
Q 010005 81 VLE-------GASTVFYVD-ATD-----------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVF 137 (520)
Q Consensus 81 ~l~-------~~D~Vih~a-a~~-----------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg 137 (520)
+++ +.|++||+| +.. ....++...+++|+.++..+.+++.. .+-.++|++||.....
T Consensus 85 ~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~~~~~ 164 (305)
T PRK08303 85 LVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDGTAEY 164 (305)
T ss_pred HHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCccccc
Confidence 664 479999999 631 11123456778899998888777653 3335899999864321
Q ss_pred cCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccC
Q 010005 138 DGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGP 193 (520)
Q Consensus 138 ~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp 193 (520)
.. . +......|+.+|+..+.+.+.++.+ +|+++.++.||.+-.+
T Consensus 165 ~~----------~--~~~~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T~ 211 (305)
T PRK08303 165 NA----------T--HYRLSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRSE 211 (305)
T ss_pred cC----------c--CCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCccccH
Confidence 00 0 1122457999999999888766543 5899999999987543
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.1e-11 Score=118.73 Aligned_cols=190 Identities=16% Similarity=0.079 Sum_probs=130.9
Q ss_pred CCCCCCCCCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHH
Q 010005 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIK 79 (520)
Q Consensus 1 m~~~~~~~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~ 79 (520)
|.++..+|+||+|+|++|.||+.++..|..++. ++++.+|+. ...... ..+.+ ........+..|+.++.
T Consensus 1 ~~~~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~----~~~g~a-~Dl~~----~~~~~~v~~~td~~~~~ 71 (321)
T PTZ00325 1 MRPSALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV----GAPGVA-ADLSH----IDTPAKVTGYADGELWE 71 (321)
T ss_pred CCCcCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC----CCcccc-cchhh----cCcCceEEEecCCCchH
Confidence 666777889999999999999999999986553 479998872 111111 01111 11123445666655567
Q ss_pred HHHcCCCEEEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCC
Q 010005 80 KVLEGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQD 158 (520)
Q Consensus 80 ~~l~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~ 158 (520)
+.++++|+||+++|.. ....++...+..|+..++++++++++++++++|+++|..+-...........+.. ...|..
T Consensus 72 ~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~s--g~p~~~ 149 (321)
T PTZ00325 72 KALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAG--VYDPRK 149 (321)
T ss_pred HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhcc--CCChhh
Confidence 8899999999999983 3345678899999999999999999999999999999988643322110112222 446677
Q ss_pred hHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC-CchHHH
Q 010005 159 LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-QLVPLL 202 (520)
Q Consensus 159 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~-~~~~~l 202 (520)
.||.+-...-++-...+++.+++...++ +.|+|.... ..++.+
T Consensus 150 viG~g~LDs~R~r~~la~~l~v~~~~V~-~~VlGeHGd~s~v~~~ 193 (321)
T PTZ00325 150 LFGVTTLDVVRARKFVAEALGMNPYDVN-VPVVGGHSGVTIVPLL 193 (321)
T ss_pred eeechhHHHHHHHHHHHHHhCcChhheE-EEEEeecCCcccccch
Confidence 7887644444555555666788888888 778886444 344433
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-09 Score=108.00 Aligned_cols=231 Identities=10% Similarity=-0.001 Sum_probs=137.8
Q ss_pred CCCCCCCCCeEEEEcCC--ChhHHHHHHHHHhcCCcEEEEecCCcccccC-CCCCCCCCCCC---CC-------------
Q 010005 1 MPFDEAIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLD-PSESNSLLPDS---LS------------- 61 (520)
Q Consensus 1 m~~~~~~~~~ILVtGat--GfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~-r~~~~~~l~~~---~~------------- 61 (520)
|+....++|.++||||+ .-||+++++.|.++| .+|++.|+....... ++......... ..
T Consensus 1 ~~~~~~~gk~alITGa~~~~GIG~a~A~~la~~G-a~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (299)
T PRK06300 1 MLKIDLTGKIAFIAGIGDDQGYGWGIAKALAEAG-ATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMD 79 (299)
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHHHHCC-CEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhh
Confidence 55556678999999995 899999999999999 698886542100011 11110000000 00
Q ss_pred --CCCcEEEEecCCCH--------HHHHHHH-------cCCCEEEEcccCC---------CCCcchhhHHhhhHHHHHHH
Q 010005 62 --SGRAEYHQVDVRDI--------SQIKKVL-------EGASTVFYVDATD---------LNTDDFYNCYMIIVQGAKNV 115 (520)
Q Consensus 62 --~~~v~~~~~Dl~d~--------~~l~~~l-------~~~D~Vih~aa~~---------~~~~~~~~~~~~Nv~gt~~l 115 (520)
-...+.+.+|+++. +++.+++ .++|++||+||.. .+..+++..+++|+.|+.++
T Consensus 80 ~d~~~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l 159 (299)
T PRK06300 80 ASFDTPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSL 159 (299)
T ss_pred hhcCCCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHH
Confidence 01122333333331 1233333 2589999999741 12346678899999999999
Q ss_pred HHHHHHC--CCCEEEEeecccccccCCCCCCCCCCCccCCCCCC-ChHHHHHHHHHHHHHHhcC----CCCceEEEEecC
Q 010005 116 VTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQ-DLMCDLKAQAEALVLFANN----IDGLLTCALRPS 188 (520)
Q Consensus 116 l~aa~~~--gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~-~~Y~~sK~~~E~~~~~~~~----~~gi~~~ilRp~ 188 (520)
.+++... .-.++|.+||....- +.... ..|+.+|+..+.+.+.++. ++|+++.++.||
T Consensus 160 ~~a~~p~m~~~G~ii~iss~~~~~---------------~~p~~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~PG 224 (299)
T PRK06300 160 LSHFGPIMNPGGSTISLTYLASMR---------------AVPGYGGGMSSAKAALESDTKVLAWEAGRRWGIRVNTISAG 224 (299)
T ss_pred HHHHHHHhhcCCeEEEEeehhhcC---------------cCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeC
Confidence 9888654 124788888765421 10112 3799999999988776653 248999999999
Q ss_pred ccccCCCCCc--hHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 189 NVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 189 ~vyGp~~~~~--~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.+-.+..... .+..........+ ...+...+|++.++..++.. ......|+.+.+.++.
T Consensus 225 ~v~T~~~~~~~~~~~~~~~~~~~~p---------~~r~~~peevA~~v~~L~s~---~~~~itG~~i~vdGG~ 285 (299)
T PRK06300 225 PLASRAGKAIGFIERMVDYYQDWAP---------LPEPMEAEQVGAAAAFLVSP---LASAITGETLYVDHGA 285 (299)
T ss_pred CccChhhhcccccHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCc---cccCCCCCEEEECCCc
Confidence 8875532111 1111111111111 12345689999999987751 1235677888886643
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.3e-10 Score=106.53 Aligned_cols=194 Identities=16% Similarity=0.113 Sum_probs=135.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
++..||||||++-+|+.++.++.++|. .+.+.|+.... ..+......+ ...+..+.||++|.+++.+..+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~---~~etv~~~~~---~g~~~~y~cdis~~eei~~~a~~Vk 109 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQG---NEETVKEIRK---IGEAKAYTCDISDREEIYRLAKKVK 109 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccc---hHHHHHHHHh---cCceeEEEecCCCHHHHHHHHHHHH
Confidence 468999999999999999999999994 88888875421 1111111111 1368899999999987765543
Q ss_pred ----CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHH----HHHCCCCEEEEeecccccccCCCCCCCCCC
Q 010005 84 ----GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 ----~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~a----a~~~gvkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
.+|++||.||. ..+++.-+.++++|+.|.....++ +.+.+-.++|-++|..-+.
T Consensus 110 ~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~~----------- 178 (300)
T KOG1201|consen 110 KEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGLF----------- 178 (300)
T ss_pred HhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhccc-----------
Confidence 58999999998 234455678999999998776555 4555556999999887542
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHh------cCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccc
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFA------NNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~------~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
+......|..||.++.-.-+.+ .+..|++++.+-|+.+= .+ ++ .+ ...-..+.
T Consensus 179 ----g~~gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~-Tg-------mf----~~-----~~~~~~l~ 237 (300)
T KOG1201|consen 179 ----GPAGLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFIN-TG-------MF----DG-----ATPFPTLA 237 (300)
T ss_pred ----CCccchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeecc-cc-------cc----CC-----CCCCcccc
Confidence 2344678999999876654443 23467889988886553 11 00 01 11123457
Q ss_pred ccccHHHHHHHHHHHHH
Q 010005 223 DFTYVENVAHAHVCAAE 239 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~ 239 (520)
+.+..+.+|+.++.+++
T Consensus 238 P~L~p~~va~~Iv~ai~ 254 (300)
T KOG1201|consen 238 PLLEPEYVAKRIVEAIL 254 (300)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 88889999999998887
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.1e-10 Score=105.21 Aligned_cols=156 Identities=22% Similarity=0.194 Sum_probs=110.9
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCC---CCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLL---PDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~-~~~l---~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
++|||||+|-||..+++.|.++|..+|++ +.|++. .... .+.+ ....+.++.+|++|++++.++++
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il--------~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~ 73 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLIL--------LGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALA 73 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEE--------EESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHH
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEE--------eccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHH
Confidence 68999999999999999999998777888 555521 1000 0011 13468889999999999999986
Q ss_pred C-------CCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCC
Q 010005 84 G-------ASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDET 149 (520)
Q Consensus 84 ~-------~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~ 149 (520)
. ++.|||+|+.. .........+..-+.|+.+|.++.....++.||.+||.+..-
T Consensus 74 ~~~~~~~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SSis~~~------------ 141 (181)
T PF08659_consen 74 QLRQRFGPIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSSISSLL------------ 141 (181)
T ss_dssp TSHTTSS-EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEHHHHT------------
T ss_pred HHHhccCCcceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECChhHhc------------
Confidence 4 47899999881 222345667888899999999999998899999999988642
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCc
Q 010005 150 LTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSN 189 (520)
Q Consensus 150 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~ 189 (520)
.......|+..-...+.+...... .|.+++++.-+.
T Consensus 142 ---G~~gq~~YaaAN~~lda~a~~~~~-~g~~~~sI~wg~ 177 (181)
T PF08659_consen 142 ---GGPGQSAYAAANAFLDALARQRRS-RGLPAVSINWGA 177 (181)
T ss_dssp ---T-TTBHHHHHHHHHHHHHHHHHHH-TTSEEEEEEE-E
T ss_pred ---cCcchHhHHHHHHHHHHHHHHHHh-CCCCEEEEEccc
Confidence 112346899999999998887655 689988887554
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.1e-11 Score=114.58 Aligned_cols=208 Identities=17% Similarity=0.118 Sum_probs=141.9
Q ss_pred cCC--ChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC--CCCCCCCCCCCcEEEEecCCCHHHHHHHH--------
Q 010005 15 NGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN--SLLPDSLSSGRAEYHQVDVRDISQIKKVL-------- 82 (520)
Q Consensus 15 Gat--GfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~--~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l-------- 82 (520)
|++ +-||.+++++|+++| .+|++.|+.. .+ ..+.+.....+.+.+.+|+.|++++.+++
T Consensus 1 g~~~s~GiG~aia~~l~~~G-a~V~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 71 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEG-ANVILTDRNE--------EKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVERFG 71 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTT-EEEEEEESSH--------HHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHHHC
T ss_pred CCCCCCChHHHHHHHHHHCC-CEEEEEeCCh--------HHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhhcC
Confidence 566 999999999999999 6999955433 21 01111111123457999999998877664
Q ss_pred cCCCEEEEcccCCCC-----------CcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCCCCCCCCC
Q 010005 83 EGASTVFYVDATDLN-----------TDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDET 149 (520)
Q Consensus 83 ~~~D~Vih~aa~~~~-----------~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~~~~~~E~ 149 (520)
.++|++||+++.... ..++...+++|+.+...+.+++... .-.++|++||.....
T Consensus 72 g~iD~lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~------------ 139 (241)
T PF13561_consen 72 GRIDILVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQR------------ 139 (241)
T ss_dssp SSESEEEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTS------------
T ss_pred CCeEEEEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcc------------
Confidence 357999999987322 2355778999999999999988553 124799999886531
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHhcC---C-CCceEEEEecCccccCCCCCc--hHHHHHHhcCCCceEEecCCCcccc
Q 010005 150 LTCCWKFQDLMCDLKAQAEALVLFANN---I-DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 150 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~-~gi~~~ilRp~~vyGp~~~~~--~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
+......|+.+|+..|.+.+.++. . +|+++.++.||.+-.+..... .+.+.+......| ...
T Consensus 140 ---~~~~~~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~~~~~~~~~~~~~~~~~p---------l~r 207 (241)
T PF13561_consen 140 ---PMPGYSAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPMTERIPGNEEFLEELKKRIP---------LGR 207 (241)
T ss_dssp ---BSTTTHHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHHHHHHHTHHHHHHHHHHHST---------TSS
T ss_pred ---cCccchhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccchhccccccchhhhhhhhhc---------cCC
Confidence 223345899999999998877642 3 699999999998885532111 2333333332222 223
Q ss_pred cccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
+...+|+|.++..++.- ......|++..+.+|
T Consensus 208 ~~~~~evA~~v~fL~s~---~a~~itG~~i~vDGG 239 (241)
T PF13561_consen 208 LGTPEEVANAVLFLASD---AASYITGQVIPVDGG 239 (241)
T ss_dssp HBEHHHHHHHHHHHHSG---GGTTGTSEEEEESTT
T ss_pred CcCHHHHHHHHHHHhCc---cccCccCCeEEECCC
Confidence 45699999999988861 123578888888765
|
... |
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-09 Score=107.27 Aligned_cols=222 Identities=18% Similarity=0.112 Sum_probs=146.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-----CC-CCCCCCCCCcEEEEecCCCHHHH
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-----SL-LPDSLSSGRAEYHQVDVRDISQI 78 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-----~~-l~~~~~~~~v~~~~~Dl~d~~~l 78 (520)
..++|.++||||+.-||.+++++|.+.| .+|++.+ |+.+. .. .......+++..+.+|+++.++.
T Consensus 5 ~l~gkvalVTG~s~GIG~aia~~la~~G-a~v~i~~--------r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~ 75 (270)
T KOG0725|consen 5 RLAGKVALVTGGSSGIGKAIALLLAKAG-AKVVITG--------RSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDV 75 (270)
T ss_pred cCCCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEe--------CCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHH
Confidence 3467899999999999999999999999 4988844 43321 00 01111134678899999988766
Q ss_pred HHHHc--------CCCEEEEcccC--------CCCCcchhhHHhhhHHH-HHHHHHHHHHC----CCCEEEEeecccccc
Q 010005 79 KKVLE--------GASTVFYVDAT--------DLNTDDFYNCYMIIVQG-AKNVVTACREC----KVRRLVYNSTADVVF 137 (520)
Q Consensus 79 ~~~l~--------~~D~Vih~aa~--------~~~~~~~~~~~~~Nv~g-t~~ll~aa~~~----gvkr~V~~SS~~vyg 137 (520)
.++++ +.|++|+.||. +.+...++.++++|+.| +..+..++..+ +-..++++||..-+.
T Consensus 76 ~~l~~~~~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~ 155 (270)
T KOG0725|consen 76 EKLVEFAVEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVG 155 (270)
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEecccccc
Confidence 55542 48999999998 23456778899999995 66666666543 345789998886642
Q ss_pred cCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCC-Cc----hHHHHHHhcCC
Q 010005 138 DGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT-QL----VPLLVNLAKPG 209 (520)
Q Consensus 138 ~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~-~~----~~~l~~~~~~g 209 (520)
.. +..+ ..|+.+|...+++.+..+.+ +|+++.++-|+.|..+-.. .. ...+.+.....
T Consensus 156 ~~-------------~~~~-~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~ 221 (270)
T KOG0725|consen 156 PG-------------PGSG-VAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEATDSK 221 (270)
T ss_pred CC-------------CCCc-ccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCccccccccchhhHHhhhhccc
Confidence 11 1112 78999999999998887543 7999999999998887511 11 11222210011
Q ss_pred CceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 210 WTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 210 ~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
. .+ ..-.+.-.+|++.++..++.- ......|+...+.++.
T Consensus 222 ~--~~-----p~gr~g~~~eva~~~~fla~~---~asyitG~~i~vdgG~ 261 (270)
T KOG0725|consen 222 G--AV-----PLGRVGTPEEVAEAAAFLASD---DASYITGQTIIVDGGF 261 (270)
T ss_pred c--cc-----ccCCccCHHHHHHhHHhhcCc---ccccccCCEEEEeCCE
Confidence 1 11 122345589999998877651 1124566666666543
|
|
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.9e-09 Score=103.01 Aligned_cols=199 Identities=20% Similarity=0.180 Sum_probs=137.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-----CCCCCCCCCCCcEEEEecCCCHHHHHHHH
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-----SLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-----~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
..+|+||||+.-+|..++..+..+|+ .|++ +.|+..+ ..+.-......+.+..+|+.|.+++...+
T Consensus 33 ~~hi~itggS~glgl~la~e~~~~ga-~Vti--------~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~ 103 (331)
T KOG1210|consen 33 RRHILITGGSSGLGLALALECKREGA-DVTI--------TARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVI 103 (331)
T ss_pred cceEEEecCcchhhHHHHHHHHHccC-ceEE--------EeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHH
Confidence 36899999999999999999999995 8999 6777552 12221122234678899999999988887
Q ss_pred cC-------CCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHHHC----C-CCEEEEeecccccccCCCCC
Q 010005 83 EG-------ASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 83 ~~-------~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~~~----g-vkr~V~~SS~~vyg~~~~~~ 143 (520)
++ +|.+|+|||. ..+....+...++|..|+.|++.++... . ..+++.+||.....
T Consensus 104 ~~l~~~~~~~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~------ 177 (331)
T KOG1210|consen 104 EELRDLEGPIDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAML------ 177 (331)
T ss_pred hhhhhccCCcceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhc------
Confidence 63 5999999998 2333456778999999999999887543 1 23788888876531
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhc---CCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCc
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~---~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~ 220 (520)
+....+.|+.+|...-.+..... .++|+.++..-|+.+-.||-.. +...+.....+...+.
T Consensus 178 ---------~i~GysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tpGfE~------En~tkP~~t~ii~g~s- 241 (331)
T KOG1210|consen 178 ---------GIYGYSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTPGFER------ENKTKPEETKIIEGGS- 241 (331)
T ss_pred ---------CcccccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCCcccc------ccccCchheeeecCCC-
Confidence 44556778888877655544332 3378999999999988886421 0001111112222222
Q ss_pred ccccccHHHHHHHHHHHHH
Q 010005 221 MSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~ 239 (520)
+-+-.+++|.+++.-+.
T Consensus 242 --s~~~~e~~a~~~~~~~~ 258 (331)
T KOG1210|consen 242 --SVIKCEEMAKAIVKGMK 258 (331)
T ss_pred --CCcCHHHHHHHHHhHHh
Confidence 33679999999987665
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.9e-10 Score=100.95 Aligned_cols=158 Identities=15% Similarity=0.120 Sum_probs=116.5
Q ss_pred CCCeEEEEcC-CChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 7 IPRTCVVLNG-RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 7 ~~~~ILVtGa-tGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
..++|||||+ .|-||.+|++.+.+.| +.|.+ ..|+.+ ...+...+.++...+.|+.+++++.+...
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G-~~V~A--------taR~~e--~M~~L~~~~gl~~~kLDV~~~~~V~~v~~ev 74 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNG-YLVYA--------TARRLE--PMAQLAIQFGLKPYKLDVSKPEEVVTVSGEV 74 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCC-eEEEE--------Eccccc--hHhhHHHhhCCeeEEeccCChHHHHHHHHHH
Confidence 4689999986 5799999999999999 79998 566544 22222234578899999999998876653
Q ss_pred ------CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHHHC--C-CCEEEEeecccccccCCCCCCCCC
Q 010005 84 ------GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACREC--K-VRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 ------~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~~~--g-vkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
+.|+.++.||. +....+-+.++++|+.|..++.++.... + ...+|++.|...|-
T Consensus 75 r~~~~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~v---------- 144 (289)
T KOG1209|consen 75 RANPDGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVV---------- 144 (289)
T ss_pred hhCCCCceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEe----------
Confidence 25999999987 2334556789999999999998887643 1 24799999998873
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCcc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNV 190 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v 190 (520)
|....+.|..||++.-++.+.+.-+ .|++++.+-+|.|
T Consensus 145 -----pfpf~~iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv 185 (289)
T KOG1209|consen 145 -----PFPFGSIYSASKAAIHAYARTLRLELKPFGVRVINAITGGV 185 (289)
T ss_pred -----ccchhhhhhHHHHHHHHhhhhcEEeeeccccEEEEecccce
Confidence 3345678999999988877665432 4555555555444
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.3e-09 Score=104.35 Aligned_cols=161 Identities=19% Similarity=0.167 Sum_probs=113.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC---CCCCC--CCC-CCcEEEEecCCC-HHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS---LLPDS--LSS-GRAEYHQVDVRD-ISQI 78 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~---~l~~~--~~~-~~v~~~~~Dl~d-~~~l 78 (520)
.++|+|+||||++-||..+++.|.++| +.|++. .|..... ...+. ... ..+....+|+++ .+++
T Consensus 3 ~~~~~ilITGas~GiG~aia~~l~~~G-~~v~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v 73 (251)
T COG1028 3 LSGKVALVTGASSGIGRAIARALAREG-ARVVVA--------ARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESV 73 (251)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CeEEEE--------cCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHH
Confidence 356899999999999999999999999 586663 2222110 00000 001 256778899998 7766
Q ss_pred HHHHc-------CCCEEEEcccCC--------CCCcchhhHHhhhHHHHHHHHHHHHHCC-CCEEEEeecccccccCCCC
Q 010005 79 KKVLE-------GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 79 ~~~l~-------~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-vkr~V~~SS~~vyg~~~~~ 142 (520)
..+++ +.|++||.||.. ......+..+++|+.+...+.+++...- .+++|.+||.... ..
T Consensus 74 ~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~-~~--- 149 (251)
T COG1028 74 EALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL-GG--- 149 (251)
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc-CC---
Confidence 65553 389999999962 1235678899999999999888544331 1289999998753 11
Q ss_pred CCCCCCCccCCCCC-CChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccc
Q 010005 143 IHNGDETLTCCWKF-QDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVF 191 (520)
Q Consensus 143 ~~~~~E~~~~~~~p-~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vy 191 (520)
.+ ...|+.||+..+.+.+.++. .+|+.+.++-||.+-
T Consensus 150 ------------~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~ 190 (251)
T COG1028 150 ------------PPGQAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYID 190 (251)
T ss_pred ------------CCCcchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCC
Confidence 11 47899999999988777763 368999999999544
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.6e-09 Score=106.75 Aligned_cols=180 Identities=13% Similarity=0.047 Sum_probs=124.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-----CCCCCCCCCCCCcEEEEecCCCHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-----NSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~-----~~~l~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (520)
..++.++||||++-||.++++.|.++| .+|+. ..|+.. ...+........+.++++|+.|.+++.+
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~G-a~Vv~--------~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~ 103 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRG-AHVVL--------ACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRK 103 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCC-CEEEE--------EeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHH
Confidence 456899999999999999999999999 68988 455542 1122222334567889999999988877
Q ss_pred HHc-------CCCEEEEcccCC-----CCCcchhhHHhhhHHHHHHHHHH----HHHCCCCEEEEeecccccccCCCCCC
Q 010005 81 VLE-------GASTVFYVDATD-----LNTDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 81 ~l~-------~~D~Vih~aa~~-----~~~~~~~~~~~~Nv~gt~~ll~a----a~~~gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
..+ ..|+.|+.||.. ...+..+.++.+|..|...+.+. ++.....|+|++||..- +....-..
T Consensus 104 fa~~~~~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~-~~~~~~~~ 182 (314)
T KOG1208|consen 104 FAEEFKKKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILG-GGKIDLKD 182 (314)
T ss_pred HHHHHHhcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccc-cCccchhh
Confidence 664 369999999982 22345788999999998776655 45554469999999764 11100000
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCCC--CceEEEEecCccccCCCC
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDT 196 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~vyGp~~~ 196 (520)
...|... .......|+.||........+++++. |+.+..+.||.+.+++-.
T Consensus 183 l~~~~~~-~~~~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~l~ 235 (314)
T KOG1208|consen 183 LSGEKAK-LYSSDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTGLS 235 (314)
T ss_pred ccchhcc-CccchhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCccccccee
Confidence 1111110 01222359999999887777776554 799999999999887443
|
|
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-08 Score=94.57 Aligned_cols=202 Identities=16% Similarity=0.101 Sum_probs=135.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC--CCC-CCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS--LLP-DSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~--~l~-~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
++.|+||||+.-||-.|+++|++...-++.+. ..|++++. ++. ....+++++.++.|+++.+++.+..+
T Consensus 3 pksv~ItGaNRGIGlgLVk~llk~~~i~~iia-------t~r~~e~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~ 75 (249)
T KOG1611|consen 3 PKSVFITGANRGIGLGLVKELLKDKGIEVIIA-------TARDPEKAATELALKSKSDSRVHIIQLDVTCDESIDNFVQE 75 (249)
T ss_pred CccEEEeccCcchhHHHHHHHhcCCCcEEEEE-------ecCChHHhhHHHHHhhccCCceEEEEEecccHHHHHHHHHH
Confidence 46799999999999999999998632344442 45544431 111 12246899999999999887766653
Q ss_pred --------CCCEEEEcccCC--------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCC-----------EEEEeec
Q 010005 84 --------GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVR-----------RLVYNST 132 (520)
Q Consensus 84 --------~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvk-----------r~V~~SS 132 (520)
|.|+.|+.||.. ........++++|+.|+..+.+++ ++...+ .+|++||
T Consensus 76 V~~iVg~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS 155 (249)
T KOG1611|consen 76 VEKIVGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISS 155 (249)
T ss_pred HHhhcccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeec
Confidence 579999999981 122235678999999988776654 222222 6898988
Q ss_pred ccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhc---CCCCceEEEEecCccccCCCCCchHHHHHHhcCC
Q 010005 133 ADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPG 209 (520)
Q Consensus 133 ~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~---~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g 209 (520)
...-- .. ....+...|..||++.-...+... +++++-++.+-||.|--..
T Consensus 156 ~~~s~---------~~---~~~~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~TDM--------------- 208 (249)
T KOG1611|consen 156 SAGSI---------GG---FRPGGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQTDM--------------- 208 (249)
T ss_pred ccccc---------CC---CCCcchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEcCC---------------
Confidence 76421 01 134567899999999888877653 3467888888888775221
Q ss_pred CceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEE
Q 010005 210 WTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFI 255 (520)
Q Consensus 210 ~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni 255 (520)
|. .-.-+.+++-+.-++..+..+. +...|..||-
T Consensus 209 ------gg---~~a~ltveeSts~l~~~i~kL~---~~hnG~ffn~ 242 (249)
T KOG1611|consen 209 ------GG---KKAALTVEESTSKLLASINKLK---NEHNGGFFNR 242 (249)
T ss_pred ------CC---CCcccchhhhHHHHHHHHHhcC---cccCcceEcc
Confidence 11 1234558888888888887663 4455555554
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-09 Score=97.59 Aligned_cols=161 Identities=16% Similarity=0.123 Sum_probs=117.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC-CCCCcEEEEecCCCHHHHHHHHc--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~-~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.+-+||||||+.-||..+++++.+.|. +|++ ..|+.. .+.+.. ..+.+.-..||+.|.++.+++++
T Consensus 4 tgnTiLITGG~sGIGl~lak~f~elgN-~VIi--------~gR~e~--~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewL 72 (245)
T COG3967 4 TGNTILITGGASGIGLALAKRFLELGN-TVII--------CGRNEE--RLAEAKAENPEIHTEVCDVADRDSRRELVEWL 72 (245)
T ss_pred cCcEEEEeCCcchhhHHHHHHHHHhCC-EEEE--------ecCcHH--HHHHHHhcCcchheeeecccchhhHHHHHHHH
Confidence 357999999999999999999999995 8888 677755 222211 24577889999999887666554
Q ss_pred -----CCCEEEEcccCC---------CCCcchhhHHhhhHHHHHHHHHHHHHC----CCCEEEEeecccccccCCCCCCC
Q 010005 84 -----GASTVFYVDATD---------LNTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 -----~~D~Vih~aa~~---------~~~~~~~~~~~~Nv~gt~~ll~aa~~~----gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
..+++|++||+. ....+-...+++|..++.+|..+...+ .-.-+|.+||.-.+-
T Consensus 73 kk~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafv-------- 144 (245)
T COG3967 73 KKEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFV-------- 144 (245)
T ss_pred HhhCCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccC--------
Confidence 369999999981 111223567889999999998887554 234689999876641
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHh---cCCCCceEEEEecCccccC
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFA---NNIDGLLTCALRPSNVFGP 193 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~---~~~~gi~~~ilRp~~vyGp 193 (520)
|......|..+|+..-.+-..+ .+..+++++-+-|+.|--+
T Consensus 145 -------Pm~~~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 145 -------PMASTPVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT 188 (245)
T ss_pred -------cccccccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence 3333457999999887764443 3445788998888887653
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.5e-10 Score=111.99 Aligned_cols=181 Identities=14% Similarity=0.041 Sum_probs=126.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
..||+|||++|.||++++..|..++. .+++++|+.. .......+. +........++.+.+++.+.++++|
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-----~~g~a~Dl~----~~~~~~~i~~~~~~~d~~~~l~~aD 88 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-----TPGVAADVS----HINTPAQVRGFLGDDQLGDALKGAD 88 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-----CCeeEchhh----hCCcCceEEEEeCCCCHHHHcCCCC
Confidence 47999999999999999999997664 4799988743 111000111 1111223335444445778899999
Q ss_pred EEEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHH
Q 010005 87 TVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKA 165 (520)
Q Consensus 87 ~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~ 165 (520)
+|||+||.. ....+.......|+..++++.+++++++.+++|+++|.-+=+....-........ ...|...||.++.
T Consensus 89 iVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s--~~p~~~viG~~~L 166 (323)
T PLN00106 89 LVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAG--VYDPKKLFGVTTL 166 (323)
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcC--CCCcceEEEEecc
Confidence 999999983 3346788999999999999999999999999999999866211100000111222 4567788999999
Q ss_pred HHHHHHHHhcCCCCceEEEEecCccccCC-CCCchH
Q 010005 166 QAEALVLFANNIDGLLTCALRPSNVFGPG-DTQLVP 200 (520)
Q Consensus 166 ~~E~~~~~~~~~~gi~~~ilRp~~vyGp~-~~~~~~ 200 (520)
..+++-..++++.|++...++ +.|+|.. +...++
T Consensus 167 Ds~Rl~~~lA~~lgv~~~~V~-~~ViGeHg~~s~vp 201 (323)
T PLN00106 167 DVVRANTFVAEKKGLDPADVD-VPVVGGHAGITILP 201 (323)
T ss_pred hHHHHHHHHHHHhCCChhheE-EEEEEeCCCccEee
Confidence 999999999988999988886 4555643 434444
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.8e-09 Score=101.19 Aligned_cols=161 Identities=19% Similarity=0.158 Sum_probs=120.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
..+-|+|||+-.-.|..++.+|.++| +.|.+... ..... ..+.....+++...++.|+++++++.++.+
T Consensus 28 ~~k~VlITGCDSGfG~~LA~~L~~~G-f~V~Agcl------~~~ga-e~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~ 99 (322)
T KOG1610|consen 28 SDKAVLITGCDSGFGRLLAKKLDKKG-FRVFAGCL------TEEGA-ESLRGETKSPRLRTLQLDVTKPESVKEAAQWVK 99 (322)
T ss_pred CCcEEEEecCCcHHHHHHHHHHHhcC-CEEEEEee------cCchH-HHHhhhhcCCcceeEeeccCCHHHHHHHHHHHH
Confidence 45779999999999999999999999 58887432 22221 122222236788899999999999888775
Q ss_pred ------CCCEEEEcccCC--------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCC
Q 010005 84 ------GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 ------~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
+--.|||.||.. ...+++....++|..|+.++..+. |++. .|+|++||..- ..
T Consensus 100 ~~l~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~ar-GRvVnvsS~~G----R~---- 170 (322)
T KOG1610|consen 100 KHLGEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRAR-GRVVNVSSVLG----RV---- 170 (322)
T ss_pred HhcccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc-CeEEEeccccc----Cc----
Confidence 346999999961 233577889999999998887775 3443 49999999752 00
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCcccc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFG 192 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyG 192 (520)
+.....+|..||+..|.....+..+ +|+.+.++-|| +|-
T Consensus 171 -------~~p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG-~f~ 212 (322)
T KOG1610|consen 171 -------ALPALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPG-FFK 212 (322)
T ss_pred -------cCcccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccC-ccc
Confidence 2234679999999999887665443 79999999999 453
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=98.98 E-value=9e-09 Score=126.45 Aligned_cols=172 Identities=14% Similarity=0.079 Sum_probs=123.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccc--------cC----------------CCCCC----CC---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQ--------LD----------------PSESN----SL--- 55 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~--------l~----------------r~~~~----~~--- 55 (520)
+++.+|||||+|-||..++++|.+++-.+|+++++..... .. +.+.. ..
T Consensus 1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813 1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence 4679999999999999999999998325888866541000 00 00000 00
Q ss_pred ----------CCCC-CCCCCcEEEEecCCCHHHHHHHHc------CCCEEEEcccCC-------CCCcchhhHHhhhHHH
Q 010005 56 ----------LPDS-LSSGRAEYHQVDVRDISQIKKVLE------GASTVFYVDATD-------LNTDDFYNCYMIIVQG 111 (520)
Q Consensus 56 ----------l~~~-~~~~~v~~~~~Dl~d~~~l~~~l~------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~g 111 (520)
+... -....+.++.+|++|.+++.++++ ++|.|||.||.. ....++...+++|+.|
T Consensus 2076 ~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~G 2155 (2582)
T TIGR02813 2076 VLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVDG 2155 (2582)
T ss_pred cchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHHH
Confidence 0000 012357889999999998887775 479999999971 2335678899999999
Q ss_pred HHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCCC-CceEEEEecCcc
Q 010005 112 AKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-GLLTCALRPSNV 190 (520)
Q Consensus 112 t~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-gi~~~ilRp~~v 190 (520)
+.++++++.....+++|++||...+. .......|+.+|...+.+...+..+. ++++.++.+|.+
T Consensus 2156 ~~~Ll~al~~~~~~~IV~~SSvag~~---------------G~~gqs~YaaAkaaL~~la~~la~~~~~irV~sI~wG~w 2220 (2582)
T TIGR02813 2156 LLSLLAALNAENIKLLALFSSAAGFY---------------GNTGQSDYAMSNDILNKAALQLKALNPSAKVMSFNWGPW 2220 (2582)
T ss_pred HHHHHHHHHHhCCCeEEEEechhhcC---------------CCCCcHHHHHHHHHHHHHHHHHHHHcCCcEEEEEECCee
Confidence 99999999887778999999987642 11234679999999888887776544 688999998877
Q ss_pred ccC
Q 010005 191 FGP 193 (520)
Q Consensus 191 yGp 193 (520)
-|+
T Consensus 2221 dtg 2223 (2582)
T TIGR02813 2221 DGG 2223 (2582)
T ss_pred cCC
Confidence 654
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-08 Score=94.06 Aligned_cols=217 Identities=15% Similarity=0.044 Sum_probs=141.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~-- 84 (520)
+++.+++|||.|-||..+.++|+++|...+.+.|+.. -.+....|.+..+...+-++++|+.+..++++.++.
T Consensus 4 tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~E-----n~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~ 78 (261)
T KOG4169|consen 4 TGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEE-----NPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKIL 78 (261)
T ss_pred cCceEEEecCCchhhHHHHHHHHHcCchheeehhhhh-----CHHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHH
Confidence 4789999999999999999999999964455533321 111123455566677899999999999888888763
Q ss_pred -----CCEEEEcccCCCCCcchhhHHhhhHHHHHHH----HHHHHHC-C--CCEEEEeecccccccCCCCCCCCCCCccC
Q 010005 85 -----ASTVFYVDATDLNTDDFYNCYMIIVQGAKNV----VTACREC-K--VRRLVYNSTADVVFDGSHDIHNGDETLTC 152 (520)
Q Consensus 85 -----~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~l----l~aa~~~-g--vkr~V~~SS~~vyg~~~~~~~~~~E~~~~ 152 (520)
.|++||-||... +.+++.++.+|..|..|= +....+. | -.-+|.+||. +|..
T Consensus 79 ~~fg~iDIlINgAGi~~-dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv--~GL~------------- 142 (261)
T KOG4169|consen 79 ATFGTIDILINGAGILD-DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSV--AGLD------------- 142 (261)
T ss_pred HHhCceEEEEccccccc-chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccc--cccC-------------
Confidence 699999999844 478999999998776664 4444332 1 2357888875 4321
Q ss_pred CCCCCChHHHHHHHHHHHHHH-----hcCCCCceEEEEecCccccCCCCCchHHHHHHhcC-CCceEEecCC----Cccc
Q 010005 153 CWKFQDLMCDLKAQAEALVLF-----ANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKP-GWTKFIIGSG----ENMS 222 (520)
Q Consensus 153 ~~~p~~~Y~~sK~~~E~~~~~-----~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~-g~~~~i~g~g----~~~~ 222 (520)
|..-...|+.||+..=...++ +..+.|+.+..+-|+.+= ..+...+.. +... -.++- -...
T Consensus 143 P~p~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~--------t~l~~~~~~~~~~~-e~~~~~~~~l~~~ 213 (261)
T KOG4169|consen 143 PMPVFPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTR--------TDLAENIDASGGYL-EYSDSIKEALERA 213 (261)
T ss_pred ccccchhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcch--------HHHHHHHHhcCCcc-cccHHHHHHHHHc
Confidence 223356799999875544444 233468888888887542 122222222 1111 01100 0011
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+-....+++.-++.++| ....|.+|-++.+.
T Consensus 214 ~~q~~~~~a~~~v~aiE------~~~NGaiw~v~~g~ 244 (261)
T KOG4169|consen 214 PKQSPACCAINIVNAIE------YPKNGAIWKVDSGS 244 (261)
T ss_pred ccCCHHHHHHHHHHHHh------hccCCcEEEEecCc
Confidence 22347889999999998 45667788887753
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.4e-08 Score=89.02 Aligned_cols=100 Identities=20% Similarity=0.200 Sum_probs=72.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCC-CCCCCCcEEEEecCCCHHHHHHHHcC--
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPD-SLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~-~~~~~~v~~~~~Dl~d~~~l~~~l~~-- 84 (520)
|+++||||+||+|. +++.|.++| ++|++.+ |++.. ..+.. ......+..+.+|++|.+++.+++++
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G-~~V~v~~--------R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l 70 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKG-FHVSVIA--------RREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTI 70 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCc-CEEEEEE--------CCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 58999999999886 999999999 6999844 33221 01111 00123577889999999988887763
Q ss_pred -----CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCC----EEEEeecc
Q 010005 85 -----ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR----RLVYNSTA 133 (520)
Q Consensus 85 -----~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk----r~V~~SS~ 133 (520)
.|.+|+.. .+.++.++.++|++.|++ ||+++=..
T Consensus 71 ~~~g~id~lv~~v---------------h~~~~~~~~~~~~~~gv~~~~~~~~h~~gs 113 (177)
T PRK08309 71 EKNGPFDLAVAWI---------------HSSAKDALSVVCRELDGSSETYRLFHVLGS 113 (177)
T ss_pred HHcCCCeEEEEec---------------cccchhhHHHHHHHHccCCCCceEEEEeCC
Confidence 45666443 355778999999999998 89987644
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.6e-07 Score=92.33 Aligned_cols=119 Identities=13% Similarity=0.037 Sum_probs=79.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCC------cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHH
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGK------CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~------~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
+.||+||||+|+||++++..|+..+. ++|+++|+..+ +....+. ...+.+. ......|+.+..++.+.
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~----~~~~~g~-~~Dl~d~-~~~~~~~~~~~~~~~~~ 75 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPA----LKALEGV-VMELQDC-AFPLLKSVVATTDPEEA 75 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCc----cccccce-eeehhhc-cccccCCceecCCHHHH
Confidence 46899999999999999999998552 38999776431 0000000 0000000 00112355445567788
Q ss_pred HcCCCEEEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCC--CCEEEEeec
Q 010005 82 LEGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNST 132 (520)
Q Consensus 82 l~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~g--vkr~V~~SS 132 (520)
++++|+|||+||.. ....+....++.|+.-.+.+.+...++. -..+|.+|.
T Consensus 76 l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 76 FKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred hCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 99999999999983 3345678999999999999999998883 234555554
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-07 Score=96.82 Aligned_cols=99 Identities=22% Similarity=0.287 Sum_probs=76.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCE
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~ 87 (520)
||+|||.|+ |+||+.++..|.++|..+|+++|+ +..+.........++++..+.|+.|.+.+.+++++.|+
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdR--------s~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~ 71 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADR--------SKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDL 71 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeC--------CHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCE
Confidence 489999997 999999999999999668999554 43321111111234789999999999999999999999
Q ss_pred EEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEee
Q 010005 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131 (520)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~S 131 (520)
||+++.+.. ..+++++|.+.|+ ++|=+|
T Consensus 72 VIn~~p~~~---------------~~~i~ka~i~~gv-~yvDts 99 (389)
T COG1748 72 VINAAPPFV---------------DLTILKACIKTGV-DYVDTS 99 (389)
T ss_pred EEEeCCchh---------------hHHHHHHHHHhCC-CEEEcc
Confidence 999997522 1378999999998 555433
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.8e-07 Score=94.31 Aligned_cols=191 Identities=12% Similarity=0.037 Sum_probs=127.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCc------EEEEecCCcccccCCCCCCCCCCCCC-C-CCCcEEEEecCCCHHHHH
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKC------IVRVTDSTQSLQLDPSESNSLLPDSL-S-SGRAEYHQVDVRDISQIK 79 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~------~V~~~D~~~~~~l~r~~~~~~l~~~~-~-~~~v~~~~~Dl~d~~~l~ 79 (520)
.+||.|+|++|.||++++..|...|.. +++.+|+............ .+.+.. . ..++.. .. ...
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~-Dl~~~~~~~~~~~~i-----~~--~~~ 73 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAM-ELEDCAFPLLAEIVI-----TD--DPN 73 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeeh-hhhhccccccCceEE-----ec--CcH
Confidence 579999999999999999999987642 6999887432101111110 111110 0 011221 11 125
Q ss_pred HHHcCCCEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCC--CEEEEeecccccccCCCCCCCCCCCccCCCCC
Q 010005 80 KVLEGASTVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKV--RRLVYNSTADVVFDGSHDIHNGDETLTCCWKF 156 (520)
Q Consensus 80 ~~l~~~D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gv--kr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p 156 (520)
+.++++|+||.+||. .....+.......|+.-.+.+.+...+++. ..+|.+|...=. -..-.-+..+ ...+
T Consensus 74 ~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~-----~t~~~~k~sg-~~p~ 147 (322)
T cd01338 74 VAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNT-----NALIAMKNAP-DIPP 147 (322)
T ss_pred HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHH-----HHHHHHHHcC-CCCh
Confidence 678899999999998 334467888999999999999999998862 355555532100 0000001110 1456
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCce
Q 010005 157 QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTK 212 (520)
Q Consensus 157 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~ 212 (520)
...||.++...+++...++++.|++...+|...|||+.....++.+......|.++
T Consensus 148 ~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~s~vp~~S~~~v~g~pl 203 (322)
T cd01338 148 DNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSPTQYPDFTNATIGGKPA 203 (322)
T ss_pred HheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcccEEEehhhcEECCEeH
Confidence 67899999999999999999899999999999999987666677666666666654
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.7e-07 Score=84.54 Aligned_cols=166 Identities=10% Similarity=0.024 Sum_probs=113.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~-~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
..+.+-|||||++--||..++..+.+++...++.. ..|... ...+..... ....+..+|+.+...+.+..+
T Consensus 3 ~~~r~villTGaSrgiG~~~v~~i~aed~e~~r~g-------~~r~~a~~~~L~v~~g-d~~v~~~g~~~e~~~l~al~e 74 (253)
T KOG1204|consen 3 LNMRKVILLTGASRGIGTGSVATILAEDDEALRYG-------VARLLAELEGLKVAYG-DDFVHVVGDITEEQLLGALRE 74 (253)
T ss_pred cccceEEEEecCCCCccHHHHHHHHhcchHHHHHh-------hhcccccccceEEEec-CCcceechHHHHHHHHHHHHh
Confidence 34567799999999999999999999874223221 222221 111111111 233455667766654544443
Q ss_pred -------CCCEEEEcccC----------CCCCcchhhHHhhhHHHHHHHHHHHHHC----C-CCEEEEeecccccccCCC
Q 010005 84 -------GASTVFYVDAT----------DLNTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSH 141 (520)
Q Consensus 84 -------~~D~Vih~aa~----------~~~~~~~~~~~~~Nv~gt~~ll~aa~~~----g-vkr~V~~SS~~vyg~~~~ 141 (520)
.-|.|||.||. ..+...++.+++.|+.+...+...+... . .+-+|++||....-
T Consensus 75 ~~r~k~gkr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav~---- 150 (253)
T KOG1204|consen 75 APRKKGGKRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAVR---- 150 (253)
T ss_pred hhhhcCCceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhhc----
Confidence 25999999998 1234567889999999999888877543 1 36789999887651
Q ss_pred CCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCCC--CceEEEEecCccccC
Q 010005 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGP 193 (520)
Q Consensus 142 ~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~vyGp 193 (520)
|......|+.+|++-+.+.+.++.+. ++.+..++||.+--+
T Consensus 151 -----------p~~~wa~yc~~KaAr~m~f~~lA~EEp~~v~vl~~aPGvvDT~ 193 (253)
T KOG1204|consen 151 -----------PFSSWAAYCSSKAARNMYFMVLASEEPFDVRVLNYAPGVVDTQ 193 (253)
T ss_pred -----------cccHHHHhhhhHHHHHHHHHHHhhcCccceeEEEccCCcccch
Confidence 34456789999999999998887654 788999999887654
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.3e-08 Score=86.54 Aligned_cols=199 Identities=14% Similarity=0.102 Sum_probs=138.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCC--CCCcEEEEecCCCHHHHHHHHcC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS--SGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~--~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
.++.|++||+.--||+.++..|.+.| -+|++ +.|.+. ++..... ..-++.+.+|+.+.+.+.+.+..
T Consensus 6 aG~~vlvTgagaGIG~~~v~~La~aG-A~ViA--------vaR~~a--~L~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~ 74 (245)
T KOG1207|consen 6 AGVIVLVTGAGAGIGKEIVLSLAKAG-AQVIA--------VARNEA--NLLSLVKETPSLIIPIVGDLSAWEALFKLLVP 74 (245)
T ss_pred cceEEEeecccccccHHHHHHHHhcC-CEEEE--------EecCHH--HHHHHHhhCCcceeeeEecccHHHHHHHhhcc
Confidence 46899999999999999999999999 49999 677655 2322222 12378899999999888888875
Q ss_pred ---CCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHC----C-CCEEEEeecccccccCCCCCCCCCCC
Q 010005 85 ---ASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIHNGDET 149 (520)
Q Consensus 85 ---~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~----g-vkr~V~~SS~~vyg~~~~~~~~~~E~ 149 (520)
.|..++.||.. ...++++..+++|+.+..++.+...+. + ...+|.+||.+..-
T Consensus 75 v~pidgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~R------------ 142 (245)
T KOG1207|consen 75 VFPIDGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASIR------------ 142 (245)
T ss_pred cCchhhhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhccc------------
Confidence 59999999871 234567788999999998888874332 2 23589999886531
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCC-CchHHHHHHhcCCCceEEecCCCcccccc
Q 010005 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT-QLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (520)
Q Consensus 150 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~-~~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (520)
+....+.|..+|++.+.+.+.++-+ +++++..+.|..|.-...+ .+- +-.++++. -+.-+.--|.
T Consensus 143 ---~~~nHtvYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~dnWS----DP~K~k~m----L~riPl~rFa 211 (245)
T KOG1207|consen 143 ---PLDNHTVYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGRDNWS----DPDKKKKM----LDRIPLKRFA 211 (245)
T ss_pred ---ccCCceEEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEecccccccC----Cchhccch----hhhCchhhhh
Confidence 3445678999999999887776544 4688888899888754221 110 01111111 1112233577
Q ss_pred cHHHHHHHHHHHHH
Q 010005 226 YVENVAHAHVCAAE 239 (520)
Q Consensus 226 ~v~Dva~ai~~~~~ 239 (520)
-|+.++.|+..++-
T Consensus 212 EV~eVVnA~lfLLS 225 (245)
T KOG1207|consen 212 EVDEVVNAVLFLLS 225 (245)
T ss_pred HHHHHHhhheeeee
Confidence 78888888876654
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.9e-06 Score=78.67 Aligned_cols=82 Identities=21% Similarity=0.241 Sum_probs=58.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
+++.++||||+|.||..+++.|.+.| ++|.+.|+.... .. .....+.. .......+.+|++|.+++.++++
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G-~~V~l~~r~~~~-~~--~~~~~l~~--~~~~~~~~~~Dl~~~~~v~~~v~~~~ 88 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQG-AKVIVTDIDQES-GQ--ATVEEITN--LGGEALFVSYDMEKQGDWQRVISITL 88 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCC-CEEEEEECCHHH-HH--HHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 699986543210 00 00001110 12345678999999988776553
Q ss_pred ----CCCEEEEcccC
Q 010005 84 ----GASTVFYVDAT 94 (520)
Q Consensus 84 ----~~D~Vih~aa~ 94 (520)
++|++||+||.
T Consensus 89 ~~~G~iDilVnnAG~ 103 (169)
T PRK06720 89 NAFSRIDMLFQNAGL 103 (169)
T ss_pred HHcCCCCEEEECCCc
Confidence 58999999997
|
|
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.5e-06 Score=83.16 Aligned_cols=78 Identities=13% Similarity=0.147 Sum_probs=54.2
Q ss_pred CCCeEEEEcCC----------------ChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEe
Q 010005 7 IPRTCVVLNGR----------------GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV 70 (520)
Q Consensus 7 ~~~~ILVtGat----------------GfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~ 70 (520)
++|+||||+|. ||+|++++++|+++| ++|+++|...+ ..+. ... .......+.+
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~G-a~V~li~g~~~----~~~~--~~~---~~~~~~~V~s 71 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKG-AHVIYLHGYFA----EKPN--DIN---NQLELHPFEG 71 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCC-CeEEEEeCCCc----CCCc--ccC---CceeEEEEec
Confidence 46899999986 999999999999999 59998654211 0010 000 1123345666
Q ss_pred cCCCHHHHHHHHc--CCCEEEEcccC
Q 010005 71 DVRDISQIKKVLE--GASTVFYVDAT 94 (520)
Q Consensus 71 Dl~d~~~l~~~l~--~~D~Vih~aa~ 94 (520)
|....+.+.++++ ++|+|||+||.
T Consensus 72 ~~d~~~~l~~~~~~~~~D~VIH~AAv 97 (229)
T PRK09620 72 IIDLQDKMKSIITHEKVDAVIMAAAG 97 (229)
T ss_pred HHHHHHHHHHHhcccCCCEEEECccc
Confidence 4444467888885 68999999998
|
|
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1e-06 Score=77.82 Aligned_cols=215 Identities=17% Similarity=0.106 Sum_probs=135.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
++-..+||||..-+|...++.|.+.| -.|..+|+-.+ ... ...+. -..++.+..+|++.++++..++.
T Consensus 8 kglvalvtggasglg~ataerlakqg-asv~lldlp~s------kg~-~vake-lg~~~vf~padvtsekdv~aala~ak 78 (260)
T KOG1199|consen 8 KGLVALVTGGASGLGKATAERLAKQG-ASVALLDLPQS------KGA-DVAKE-LGGKVVFTPADVTSEKDVRAALAKAK 78 (260)
T ss_pred cCeeEEeecCcccccHHHHHHHHhcC-ceEEEEeCCcc------cch-HHHHH-hCCceEEeccccCcHHHHHHHHHHHH
Confidence 44568999999999999999999999 59999886432 111 11111 13467899999999998888875
Q ss_pred ----CCCEEEEcccCC-------------CCCcchhhHHhhhHHHHHHHHHHHHH--------CCCCEEEEeeccccccc
Q 010005 84 ----GASTVFYVDATD-------------LNTDDFYNCYMIIVQGAKNVVTACRE--------CKVRRLVYNSTADVVFD 138 (520)
Q Consensus 84 ----~~D~Vih~aa~~-------------~~~~~~~~~~~~Nv~gt~~ll~aa~~--------~gvkr~V~~SS~~vyg~ 138 (520)
+.|+.++|||.. ..-.+++..+++|+.||.|+++.... ++-.|=|.+-+++|-..
T Consensus 79 ~kfgrld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaaf 158 (260)
T KOG1199|consen 79 AKFGRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAF 158 (260)
T ss_pred hhccceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeee
Confidence 369999999981 12346778899999999999886542 12234444555544311
Q ss_pred CCCCCCCCCCCccCCCCCCChHHHHHHHHHH----HHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEE
Q 010005 139 GSHDIHNGDETLTCCWKFQDLMCDLKAQAEA----LVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFI 214 (520)
Q Consensus 139 ~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~----~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i 214 (520)
. .......|+.||...-- +.+.++. .|++++.+-|+.+--|--. .+|.-+....... ++.
T Consensus 159 d-------------gq~gqaaysaskgaivgmtlpiardla~-~gir~~tiapglf~tplls-slpekv~~fla~~-ipf 222 (260)
T KOG1199|consen 159 D-------------GQTGQAAYSASKGAIVGMTLPIARDLAG-DGIRFNTIAPGLFDTPLLS-SLPEKVKSFLAQL-IPF 222 (260)
T ss_pred c-------------CccchhhhhcccCceEeeechhhhhccc-CceEEEeecccccCChhhh-hhhHHHHHHHHHh-CCC
Confidence 1 11235689999986443 3445554 6899999888765434221 1222222222211 111
Q ss_pred ecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeC
Q 010005 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (520)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~ 257 (520)
+. -.-|..+-++.+-.++| ++-..|++.-+.+
T Consensus 223 ps------rlg~p~eyahlvqaiie-----np~lngevir~dg 254 (260)
T KOG1199|consen 223 PS------RLGHPHEYAHLVQAIIE-----NPYLNGEVIRFDG 254 (260)
T ss_pred ch------hcCChHHHHHHHHHHHh-----CcccCCeEEEecc
Confidence 11 23345666777766777 5667777766654
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.2e-05 Score=80.77 Aligned_cols=117 Identities=20% Similarity=0.112 Sum_probs=81.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHh-cCC-cEEEEecCCcccccCCCCCCCCCCCCCCC-CCcEEEEecCCCHHHHHHHHcCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLE-LGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSS-GRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~-~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~~~~-~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
|||+|+||+|.+|++++..|.. .+. ++++++|+... +.. ..-.+.+ +....+.+ .+.+++.+.++++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~----~~g----~alDl~~~~~~~~i~~--~~~~d~~~~l~~~ 70 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV----TPG----VAVDLSHIPTAVKIKG--FSGEDPTPALEGA 70 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC----Ccc----eehhhhcCCCCceEEE--eCCCCHHHHcCCC
Confidence 6999999999999999998855 221 47888665421 100 0000111 11122333 2233456677899
Q ss_pred CEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccc
Q 010005 86 STVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135 (520)
Q Consensus 86 D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~v 135 (520)
|+||.++|. .....+....+..|.....++++++++++.+++|.+.|.-+
T Consensus 71 DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 999999998 33345678899999999999999999999999998888755
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.5e-06 Score=80.70 Aligned_cols=163 Identities=11% Similarity=0.079 Sum_probs=111.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-----CCCCCCCCCCCcEEEEecCCCHHH----
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-----SLLPDSLSSGRAEYHQVDVRDISQ---- 77 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-----~~l~~~~~~~~v~~~~~Dl~d~~~---- 77 (520)
.+...+|||||.-||++.+++|.++| .+|++ +.|+.++ .++.+.. +-.+..+..|..+.+.
T Consensus 48 ~g~WAVVTGaTDGIGKayA~eLAkrG-~nvvL--------IsRt~~KL~~v~kEI~~~~-~vev~~i~~Dft~~~~~ye~ 117 (312)
T KOG1014|consen 48 LGSWAVVTGATDGIGKAYARELAKRG-FNVVL--------ISRTQEKLEAVAKEIEEKY-KVEVRIIAIDFTKGDEVYEK 117 (312)
T ss_pred cCCEEEEECCCCcchHHHHHHHHHcC-CEEEE--------EeCCHHHHHHHHHHHHHHh-CcEEEEEEEecCCCchhHHH
Confidence 34789999999999999999999999 69998 7787652 1111111 1357788999987654
Q ss_pred HHHHHcC--CCEEEEcccCCCC---------CcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCC
Q 010005 78 IKKVLEG--ASTVFYVDATDLN---------TDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 78 l~~~l~~--~D~Vih~aa~~~~---------~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~ 142 (520)
+.+.+.+ +-++||++|.... ....+....+|+.++..+.+... +.+-.-+|++||.+-.-
T Consensus 118 i~~~l~~~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~~----- 192 (312)
T KOG1014|consen 118 LLEKLAGLDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGLI----- 192 (312)
T ss_pred HHHHhcCCceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEeccccccc-----
Confidence 5555555 5689999998321 11234566778777665555443 33344689999875420
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPG 194 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~ 194 (520)
|..-.+.|+.||...+..-..+.++ +|+.+-++-|..|-++.
T Consensus 193 ----------p~p~~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTkm 237 (312)
T KOG1014|consen 193 ----------PTPLLSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATKM 237 (312)
T ss_pred ----------cChhHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheeccc
Confidence 3344678999999888776655433 58888888887776653
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.6e-06 Score=88.62 Aligned_cols=95 Identities=29% Similarity=0.350 Sum_probs=67.0
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCc-EEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCEEE
Q 010005 11 CVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTVF 89 (520)
Q Consensus 11 ILVtGatGfIG~~lv~~L~~~g~~-~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~Vi 89 (520)
|+|.|| |++|+.+++.|.+++.. +|++.|++... - ..+.+.+...+++.+++|+.|.+++.++++++|+||
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~----~---~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVi 72 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEK----A---ERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVI 72 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHH----H---HHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEE
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHH----H---HHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEE
Confidence 799999 99999999999999755 78986654321 0 011111134689999999999999999999999999
Q ss_pred EcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEE
Q 010005 90 YVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129 (520)
Q Consensus 90 h~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~ 129 (520)
|+++.. ....++++|.+.|+ ++|=
T Consensus 73 n~~gp~---------------~~~~v~~~~i~~g~-~yvD 96 (386)
T PF03435_consen 73 NCAGPF---------------FGEPVARACIEAGV-HYVD 96 (386)
T ss_dssp E-SSGG---------------GHHHHHHHHHHHT--EEEE
T ss_pred ECCccc---------------hhHHHHHHHHHhCC-Ceec
Confidence 999753 12468999999997 6665
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.1e-05 Score=77.55 Aligned_cols=93 Identities=11% Similarity=0.135 Sum_probs=56.6
Q ss_pred cCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCC--HHHHHHHHcCCCEEEEcc
Q 010005 15 NGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD--ISQIKKVLEGASTVFYVD 92 (520)
Q Consensus 15 GatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d--~~~l~~~l~~~D~Vih~a 92 (520)
.+|||+|++++++|+++| ++|++++ |..... .....+++++.++-.+ .+.+.+.++++|+|||+|
T Consensus 23 ~SSG~iG~aLA~~L~~~G-~~V~li~--------r~~~~~----~~~~~~v~~i~v~s~~~m~~~l~~~~~~~DivIh~A 89 (229)
T PRK06732 23 HSTGQLGKIIAETFLAAG-HEVTLVT--------TKTAVK----PEPHPNLSIIEIENVDDLLETLEPLVKDHDVLIHSM 89 (229)
T ss_pred ccchHHHHHHHHHHHhCC-CEEEEEE--------Cccccc----CCCCCCeEEEEEecHHHHHHHHHHHhcCCCEEEeCC
Confidence 348999999999999999 5999954 322110 0012355666654432 245666778899999999
Q ss_pred cCCCCCcchhhHHhhhHHHHHHHHHHHHH
Q 010005 93 ATDLNTDDFYNCYMIIVQGAKNVVTACRE 121 (520)
Q Consensus 93 a~~~~~~~~~~~~~~Nv~gt~~ll~aa~~ 121 (520)
|.... ......-..+...+.++.+.+++
T Consensus 90 Avsd~-~~~~~~~~~~~~~~~~v~~~~~~ 117 (229)
T PRK06732 90 AVSDY-TPVYMTDLEEVSASDNLNEFLTK 117 (229)
T ss_pred ccCCc-eehhhhhhhhhhhhhhhhhhhcc
Confidence 98431 11222223344555566666654
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.9e-05 Score=78.33 Aligned_cols=105 Identities=10% Similarity=0.089 Sum_probs=75.8
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCCc------EEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCH--------
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGKC------IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI-------- 75 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~~------~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~-------- 75 (520)
||.||||+|.||++++..|...|.. +++.+|+..+ . + ..+-...|+.|.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~--~----~-----------~~~g~~~Dl~d~~~~~~~~~ 64 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPA--M----K-----------ALEGVVMELQDCAFPLLKGV 64 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCc--c----C-----------ccceeeeehhhhcccccCCc
Confidence 7999999999999999999986532 4888776431 0 1 112222233222
Q ss_pred ---HHHHHHHcCCCEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCC-CC-EEEEee
Q 010005 76 ---SQIKKVLEGASTVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECK-VR-RLVYNS 131 (520)
Q Consensus 76 ---~~l~~~l~~~D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-vk-r~V~~S 131 (520)
....+.++++|+|||+||. .....+.......|+.-.+.+.+..+++. .. .+|.+|
T Consensus 65 ~i~~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 65 VITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred EEecChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 2346788999999999998 34456788899999999999999999983 33 455555
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=98.09 E-value=2e-05 Score=76.67 Aligned_cols=93 Identities=16% Similarity=0.204 Sum_probs=68.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--CCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~~D 86 (520)
|+|||+||||. |+.+++.|.++| ++|++ ..++...... +...+...+..+..|.+++.+.++ ++|
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g-~~v~~--------s~~t~~~~~~---~~~~g~~~v~~g~l~~~~l~~~l~~~~i~ 67 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQG-IEILV--------TVTTSEGKHL---YPIHQALTVHTGALDPQELREFLKRHSID 67 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCC-CeEEE--------EEccCCcccc---ccccCCceEEECCCCHHHHHHHHHhcCCC
Confidence 68999999999 999999999999 58888 5555432111 112233455667778888888886 489
Q ss_pred EEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCE
Q 010005 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRR 126 (520)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr 126 (520)
+|||.+.+ +. ...+.|+.++|++.|+.-
T Consensus 68 ~VIDAtHP------fA------~~is~~a~~a~~~~~ipy 95 (256)
T TIGR00715 68 ILVDATHP------FA------AQITTNATAVCKELGIPY 95 (256)
T ss_pred EEEEcCCH------HH------HHHHHHHHHHHHHhCCcE
Confidence 99998853 22 355788999999999853
|
This enzyme was found to be a monomer by gel filtration. |
| >PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.9e-06 Score=62.18 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=27.4
Q ss_pred ceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 323 TRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 323 ~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
..+.|++||+++|||+|+++++|+++++.+|++++..
T Consensus 24 ~~~Ad~~kA~~~LgW~p~~~L~~~i~~~w~W~~~np~ 60 (62)
T PF13950_consen 24 HLVADISKAREELGWKPKYSLEDMIRDAWNWQKKNPN 60 (62)
T ss_dssp EE-B--HHHHHHC----SSSHHHHHHHHHHHHHHSTT
T ss_pred hhhCCHHHHHHHhCCCcCCCHHHHHHHHHHHHHHCcC
Confidence 5677999999999999999999999999999998754
|
... |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.02 E-value=6e-05 Score=76.10 Aligned_cols=106 Identities=13% Similarity=0.059 Sum_probs=75.4
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCCc------EEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHH-------
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGKC------IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS------- 76 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~~------~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~------- 76 (520)
||.|+|++|.||++++..|...+.. +++.+|+..... ..+-...|+.|..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~-----------------~a~g~~~Dl~d~~~~~~~~~ 63 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMK-----------------VLEGVVMELMDCAFPLLDGV 63 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCccc-----------------ccceeEeehhcccchhcCce
Confidence 6899999999999999999986543 588977643210 0122233333322
Q ss_pred ----HHHHHHcCCCEEEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCC-C-CEEEEeec
Q 010005 77 ----QIKKVLEGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECK-V-RRLVYNST 132 (520)
Q Consensus 77 ----~l~~~l~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-v-kr~V~~SS 132 (520)
...+.++++|+|||+||.. ....+.......|+.-.+.+.+...++. . ..+|.+|.
T Consensus 64 ~~~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsN 126 (324)
T TIGR01758 64 VPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGN 126 (324)
T ss_pred eccCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 3357888999999999983 3345578899999999999999999984 3 35555553
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00042 Score=64.66 Aligned_cols=214 Identities=14% Similarity=0.116 Sum_probs=126.1
Q ss_pred CCCCeEEEEcCCC--hhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC----CCCCCCCCCCCCcEEEEecCCCHHHHH
Q 010005 6 AIPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES----NSLLPDSLSSGRAEYHQVDVRDISQIK 79 (520)
Q Consensus 6 ~~~~~ILVtGatG--fIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~----~~~l~~~~~~~~v~~~~~Dl~d~~~l~ 79 (520)
.++||+||+|-.- -|+..+++.|.++|. ++.. ....+. -.++.+.+ ...-.++||+.+.+++.
T Consensus 4 L~GK~~lI~Gvan~rSIAwGIAk~l~~~GA-eL~f--------Ty~~e~l~krv~~la~~~--~s~~v~~cDV~~d~~i~ 72 (259)
T COG0623 4 LEGKRILIMGVANNRSIAWGIAKALAEQGA-ELAF--------TYQGERLEKRVEELAEEL--GSDLVLPCDVTNDESID 72 (259)
T ss_pred cCCceEEEEEecccccHHHHHHHHHHHcCC-EEEE--------EeccHHHHHHHHHHHhhc--cCCeEEecCCCCHHHHH
Confidence 4579999999654 899999999999995 7555 222211 00111111 12346899999998888
Q ss_pred HHHc-------CCCEEEEcccCCC-----------CCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEE---Eeeccccc
Q 010005 80 KVLE-------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLV---YNSTADVV 136 (520)
Q Consensus 80 ~~l~-------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V---~~SS~~vy 136 (520)
++++ +.|.++|+.|... +-.++....++..-+...+.++|+.. +-..+| |..|..+.
T Consensus 73 ~~f~~i~~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlgs~r~v 152 (259)
T COG0623 73 ALFATIKKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLGSERVV 152 (259)
T ss_pred HHHHHHHHhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEeccceeec
Confidence 8775 4799999998721 12234445555555556666666543 111233 33332221
Q ss_pred ccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCC--CchHHHHHHhcCCCc
Q 010005 137 FDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWT 211 (520)
Q Consensus 137 g~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~--~~~~~l~~~~~~g~~ 211 (520)
...+.-|..|+..|.-++.++.+ +|+++..+--|.|=---.. .-+..+++.....-|
T Consensus 153 ------------------PnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAGPIrTLAasgI~~f~~~l~~~e~~aP 214 (259)
T COG0623 153 ------------------PNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAGPIRTLAASGIGDFRKMLKENEANAP 214 (259)
T ss_pred ------------------CCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeecccchHHHHhhccccHHHHHHHHHhhCC
Confidence 23468899999999888877543 4666655443322100000 112233333222222
Q ss_pred eEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 212 KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 212 ~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
.+.-+..+||+...+.++--+ .....|++.++.++-+
T Consensus 215 ---------l~r~vt~eeVG~tA~fLlSdL---ssgiTGei~yVD~G~~ 251 (259)
T COG0623 215 ---------LRRNVTIEEVGNTAAFLLSDL---SSGITGEIIYVDSGYH 251 (259)
T ss_pred ---------ccCCCCHHHhhhhHHHHhcch---hcccccceEEEcCCce
Confidence 233345889988887776544 3578899999987654
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00013 Score=68.35 Aligned_cols=79 Identities=27% Similarity=0.281 Sum_probs=58.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCC-CCCcEEEEecCCCHHHHHHHHcC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLS-SGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~-~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
++++++|+||+|.+|+.+++.|.+.| .+|+++ .|+..+. .+.+.+. ..+.+...+|..|.+++.+.+++
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~--------~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLV--------GRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKG 97 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEE--------cCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhc
Confidence 56899999999999999999999999 599984 4443210 0111111 12345667889999999999999
Q ss_pred CCEEEEcccC
Q 010005 85 ASTVFYVDAT 94 (520)
Q Consensus 85 ~D~Vih~aa~ 94 (520)
+|+||+..+.
T Consensus 98 ~diVi~at~~ 107 (194)
T cd01078 98 ADVVFAAGAA 107 (194)
T ss_pred CCEEEECCCC
Confidence 9999997654
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00024 Score=73.31 Aligned_cols=102 Identities=14% Similarity=0.139 Sum_probs=63.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHH-HHcCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK-VLEGA 85 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~-~l~~~ 85 (520)
++|||.|.||||++|+.+++.|.++.+.+|+.+ .+....+.. +.........+|..+.+.++. .++++
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l--------~s~~saG~~---i~~~~~~l~~~~~~~~~~~~~~~~~~~ 105 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVM--------TADRKAGQS---FGSVFPHLITQDLPNLVAVKDADFSDV 105 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEE--------EChhhcCCC---chhhCccccCccccceecCCHHHhcCC
Confidence 467999999999999999999999965688884 332221111 010111122234433222222 25789
Q ss_pred CEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccccc
Q 010005 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (520)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vy 136 (520)
|+||-+.+. ..+.+++.++ +.| +++|-.|+..-+
T Consensus 106 DvVf~Alp~---------------~~s~~i~~~~-~~g-~~VIDlSs~fRl 139 (381)
T PLN02968 106 DAVFCCLPH---------------GTTQEIIKAL-PKD-LKIVDLSADFRL 139 (381)
T ss_pred CEEEEcCCH---------------HHHHHHHHHH-hCC-CEEEEcCchhcc
Confidence 999976642 1455677776 456 489999988765
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00088 Score=68.34 Aligned_cols=86 Identities=14% Similarity=0.047 Sum_probs=56.1
Q ss_pred CCCeEEEEcCCChhHHH--HHHHHHhcCCcEEEEecCCcccccCCCC------CCCCCCCCCC--CCCcEEEEecCCCHH
Q 010005 7 IPRTCVVLNGRGFVGRS--LVLRLLELGKCIVRVTDSTQSLQLDPSE------SNSLLPDSLS--SGRAEYHQVDVRDIS 76 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~--lv~~L~~~g~~~V~~~D~~~~~~l~r~~------~~~~l~~~~~--~~~v~~~~~Dl~d~~ 76 (520)
.+|++|||||++-+|.+ +++.| +.| ..|.+++..... ..... ....+.+... ...+..+.+|+.+.+
T Consensus 40 ggK~aLVTGaSsGIGlA~~IA~al-~~G-A~Vi~v~~~~~~-~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E 116 (398)
T PRK13656 40 GPKKVLVIGASSGYGLASRIAAAF-GAG-ADTLGVFFEKPG-TEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDE 116 (398)
T ss_pred CCCEEEEECCCchHhHHHHHHHHH-HcC-CeEEEEecCcch-hhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence 35899999999999999 89999 999 577775532100 00000 0000111111 123567899999988
Q ss_pred HHHHHHc-------CCCEEEEcccCC
Q 010005 77 QIKKVLE-------GASTVFYVDATD 95 (520)
Q Consensus 77 ~l~~~l~-------~~D~Vih~aa~~ 95 (520)
++.++++ ++|++||.+|..
T Consensus 117 ~v~~lie~I~e~~G~IDiLVnSaA~~ 142 (398)
T PRK13656 117 IKQKVIELIKQDLGQVDLVVYSLASP 142 (398)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCccC
Confidence 8776664 489999999983
|
|
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00032 Score=72.71 Aligned_cols=72 Identities=15% Similarity=0.216 Sum_probs=54.6
Q ss_pred CCCCeEEEEcC----------------CChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEE
Q 010005 6 AIPRTCVVLNG----------------RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69 (520)
Q Consensus 6 ~~~~~ILVtGa----------------tGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~ 69 (520)
.++++|||||| +|.+|.+++++|.++| .+|++++ ++... .. ..+ ...
T Consensus 186 l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~G-a~V~~v~--------~~~~~---~~---~~~--~~~ 248 (399)
T PRK05579 186 LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRG-ADVTLVS--------GPVNL---PT---PAG--VKR 248 (399)
T ss_pred cCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCC-CEEEEeC--------CCccc---cC---CCC--cEE
Confidence 46789999999 9999999999999999 5999854 33211 00 012 346
Q ss_pred ecCCCHHHHHHHHc----CCCEEEEcccC
Q 010005 70 VDVRDISQIKKVLE----GASTVFYVDAT 94 (520)
Q Consensus 70 ~Dl~d~~~l~~~l~----~~D~Vih~aa~ 94 (520)
.|+.+.+++.+.++ ++|++||+||.
T Consensus 249 ~dv~~~~~~~~~v~~~~~~~DilI~~Aav 277 (399)
T PRK05579 249 IDVESAQEMLDAVLAALPQADIFIMAAAV 277 (399)
T ss_pred EccCCHHHHHHHHHHhcCCCCEEEEcccc
Confidence 79999877776663 58999999998
|
|
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00032 Score=66.19 Aligned_cols=171 Identities=13% Similarity=0.097 Sum_probs=107.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcE----EEEecCCcccccCCCCCCC-----CCCCCCC--CCCcEEEEecCCCH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCI----VRVTDSTQSLQLDPSESNS-----LLPDSLS--SGRAEYHQVDVRDI 75 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~----V~~~D~~~~~~l~r~~~~~-----~l~~~~~--~~~v~~~~~Dl~d~ 75 (520)
+.|-+||||++.-+|-.++.+|++..... ++. ..|+-++. .+.+... ..+++++.+|+++-
T Consensus 2 ~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~l--------tcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm 73 (341)
T KOG1478|consen 2 MRKVALITGANSGLGLAICKRLLAEDDENVRLTLCL--------TCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNM 73 (341)
T ss_pred CceEEEEecCCCcccHHHHHHHHhccCCceeEEEEE--------EeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhH
Confidence 45678999999999999999999986332 333 23332210 1111112 34678899999997
Q ss_pred HHHHHH-------HcCCCEEEEcccC-CC---------------------------------CCcchhhHHhhhHHHHHH
Q 010005 76 SQIKKV-------LEGASTVFYVDAT-DL---------------------------------NTDDFYNCYMIIVQGAKN 114 (520)
Q Consensus 76 ~~l~~~-------l~~~D~Vih~aa~-~~---------------------------------~~~~~~~~~~~Nv~gt~~ 114 (520)
.++.++ ++..|.|+-.||. +. +.++-.++++.||.|..-
T Consensus 74 ~Sv~~A~~di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfy 153 (341)
T KOG1478|consen 74 QSVFRASKDIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFY 153 (341)
T ss_pred HHHHHHHHHHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhh
Confidence 665544 4457999888876 11 123345689999999887
Q ss_pred HHHHHHHC----CCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEec
Q 010005 115 VVTACREC----KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRP 187 (520)
Q Consensus 115 ll~aa~~~----gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp 187 (520)
++...... ...++|.+||..+= .. ..+-++-...+...+|..||...+-+-....++ .|+.--++.|
T Consensus 154 li~~l~pll~~~~~~~lvwtSS~~a~---kk---~lsleD~q~~kg~~pY~sSKrl~DlLh~A~~~~~~~~g~~qyvv~p 227 (341)
T KOG1478|consen 154 LIRELEPLLCHSDNPQLVWTSSRMAR---KK---NLSLEDFQHSKGKEPYSSSKRLTDLLHVALNRNFKPLGINQYVVQP 227 (341)
T ss_pred hHhhhhhHhhcCCCCeEEEEeecccc---cc---cCCHHHHhhhcCCCCcchhHHHHHHHHHHHhccccccchhhhcccC
Confidence 77665432 23489999998651 11 111111124566789999999988665444332 3455555556
Q ss_pred Cccc
Q 010005 188 SNVF 191 (520)
Q Consensus 188 ~~vy 191 (520)
|...
T Consensus 228 g~~t 231 (341)
T KOG1478|consen 228 GIFT 231 (341)
T ss_pred ceee
Confidence 5544
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00012 Score=64.82 Aligned_cols=113 Identities=13% Similarity=0.096 Sum_probs=74.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCC--CCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~--~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
|||.|+|++|.+|++++..|...+. .+++.+|+.... ..... ..+.+. ....+..... .+ .+.++++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~--~~g~a-~Dl~~~~~~~~~~~~i~~---~~----~~~~~~a 70 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDK--AEGEA-LDLSHASAPLPSPVRITS---GD----YEALKDA 70 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHH--HHHHH-HHHHHHHHGSTEEEEEEE---SS----GGGGTTE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCccc--ceeee-hhhhhhhhhccccccccc---cc----ccccccc
Confidence 6999999999999999999999864 479998876320 00000 000000 0001122222 22 3356689
Q ss_pred CEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEee
Q 010005 86 STVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (520)
Q Consensus 86 D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~S 131 (520)
|+||-+|+. .....+....++.|..-.+.+.+...+.+.+ .++.+|
T Consensus 71 Divvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt 118 (141)
T PF00056_consen 71 DIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT 118 (141)
T ss_dssp SEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred cEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence 999999998 3445678889999999999999999998743 455444
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00013 Score=73.67 Aligned_cols=73 Identities=18% Similarity=0.210 Sum_probs=49.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhc-CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~-g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
.++++|+||||+|+||++++++|.++ |..+++++ .|+..+ +... . .++..+|+. .+.+.+.+
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv--------~R~~~r--l~~L-a---~el~~~~i~---~l~~~l~~ 215 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLV--------ARQQER--LQEL-Q---AELGGGKIL---SLEEALPE 215 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEE--------cCCHHH--HHHH-H---HHhccccHH---hHHHHHcc
Confidence 35689999999999999999999865 54578884 444321 1110 0 011123443 46688889
Q ss_pred CCEEEEcccCC
Q 010005 85 ASTVFYVDATD 95 (520)
Q Consensus 85 ~D~Vih~aa~~ 95 (520)
+|+|||+++..
T Consensus 216 aDiVv~~ts~~ 226 (340)
T PRK14982 216 ADIVVWVASMP 226 (340)
T ss_pred CCEEEECCcCC
Confidence 99999999873
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0027 Score=63.95 Aligned_cols=120 Identities=11% Similarity=0.106 Sum_probs=74.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCc-EEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~-~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~ 87 (520)
|||.|+|++|.+|++++..|+..|+. +|+++|+......-.... ..+.+.+...+... .....+ +. +.++++|+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~-~dl~d~~~~~~~~~-~i~~~~--d~-~~l~~aDi 75 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLR-LDIYDALAAAGIDA-EIKISS--DL-SDVAGSDI 75 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECccccccccccc-chhhhchhccCCCc-EEEECC--CH-HHhCCCCE
Confidence 68999999999999999999999863 599987732100111100 01111100111110 111111 12 34889999
Q ss_pred EEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCCC-CEEEEeecc
Q 010005 88 VFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKV-RRLVYNSTA 133 (520)
Q Consensus 88 Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~gv-kr~V~~SS~ 133 (520)
||-+++.+ ....+.....+.|+.-.+.+++...+.+. .++|..++.
T Consensus 76 Viitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~np 123 (309)
T cd05294 76 VIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNP 123 (309)
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 99999973 23345577889999999999999888753 256666654
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0018 Score=60.79 Aligned_cols=116 Identities=14% Similarity=0.179 Sum_probs=75.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--C--C------------CCCCCCCCCCcEEE
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--N--S------------LLPDSLSSGRAEYH 68 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~--~--~------------~l~~~~~~~~v~~~ 68 (520)
+..+|+|.|++| +|+++++.|...|..+++++|.+. ..++.|..- . . .+.+..+.-+++.+
T Consensus 18 ~~s~VlviG~gg-lGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~ 96 (198)
T cd01485 18 RSAKVLIIGAGA-LGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIV 96 (198)
T ss_pred hhCcEEEECCCH-HHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEE
Confidence 357999999777 999999999999987899998763 222333310 0 0 01111112234445
Q ss_pred EecCCC-HHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccccccc
Q 010005 69 QVDVRD-ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFD 138 (520)
Q Consensus 69 ~~Dl~d-~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~ 138 (520)
..++.+ .+...+.++++|+||.+.. + ......+-+.|++.++ .+|+.++.+.||.
T Consensus 97 ~~~~~~~~~~~~~~~~~~dvVi~~~d------~--------~~~~~~ln~~c~~~~i-p~i~~~~~G~~G~ 152 (198)
T cd01485 97 EEDSLSNDSNIEEYLQKFTLVIATEE------N--------YERTAKVNDVCRKHHI-PFISCATYGLIGY 152 (198)
T ss_pred ecccccchhhHHHHHhCCCEEEECCC------C--------HHHHHHHHHHHHHcCC-CEEEEEeecCEEE
Confidence 555542 3455677889999996632 1 2223446689999997 7999998888764
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00042 Score=59.56 Aligned_cols=96 Identities=17% Similarity=0.222 Sum_probs=55.8
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCC-CCCCCCCCCC-CCCc-EEEEecCCCHHHHHHHHcCCC
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSE-SNSLLPDSLS-SGRA-EYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~-~~~~l~~~~~-~~~v-~~~~~Dl~d~~~l~~~l~~~D 86 (520)
||.|+||||++|+.+++.|.+..+.++..+ ..++. ....+..... ..+. .....| .+.+ .+.++|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~-------~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~D 68 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVAL-------VSSSRSAGKPLSEVFPHPKGFEDLSVED-ADPE----ELSDVD 68 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEE-------EESTTTTTSBHHHTTGGGTTTEEEBEEE-TSGH----HHTTES
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEe-------eeeccccCCeeehhccccccccceeEee-cchh----HhhcCC
Confidence 799999999999999999999765564442 22222 1111111111 0112 222222 3333 337899
Q ss_pred EEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecc
Q 010005 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (520)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~ 133 (520)
+||.+.+ -..+..+...+.+.|+ ++|=.|+.
T Consensus 69 vvf~a~~---------------~~~~~~~~~~~~~~g~-~ViD~s~~ 99 (121)
T PF01118_consen 69 VVFLALP---------------HGASKELAPKLLKAGI-KVIDLSGD 99 (121)
T ss_dssp EEEE-SC---------------HHHHHHHHHHHHHTTS-EEEESSST
T ss_pred EEEecCc---------------hhHHHHHHHHHhhCCc-EEEeCCHH
Confidence 9998875 2234567777788887 66655544
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0019 Score=65.27 Aligned_cols=180 Identities=10% Similarity=0.046 Sum_probs=100.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCC-c-----EEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEEecCCCHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-C-----IVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQI 78 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~-~-----~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~~Dl~d~~~l 78 (520)
+..||.|+|++|.||++++..|...|. . +++.+|+........... ..+.+.. ...+... .. ..
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a-~Dl~~~~~~~~~~~~i-~~------~~ 73 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVA-MELEDCAFPLLAGVVA-TT------DP 73 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHH-HHHhhccccccCCcEE-ec------Ch
Confidence 457999999999999999999998874 3 688988743110011110 0111100 0011111 11 22
Q ss_pred HHHHcCCCEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCC-C-EEEEeecccccccCCCCCCCCCCCccCCCC
Q 010005 79 KKVLEGASTVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKV-R-RLVYNSTADVVFDGSHDIHNGDETLTCCWK 155 (520)
Q Consensus 79 ~~~l~~~D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gv-k-r~V~~SS~~vyg~~~~~~~~~~E~~~~~~~ 155 (520)
.+.++++|+||..||. .....+.......|+.-.+.+.+.+.+++- + .++.+|...=. -..-.-+..+ ...
T Consensus 74 ~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv-----~t~v~~k~s~-g~p 147 (323)
T TIGR01759 74 EEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANT-----NALIASKNAP-DIP 147 (323)
T ss_pred HHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHH-----HHHHHHHHcC-CCC
Confidence 4677899999999998 344567889999999999999999999864 3 45545421100 0000001000 001
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchH
Q 010005 156 FQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVP 200 (520)
Q Consensus 156 p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~ 200 (520)
+....|.+....-++-...+++.+++...++-..|+|......++
T Consensus 148 ~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~s~v~ 192 (323)
T TIGR01759 148 PKNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHSNTQVP 192 (323)
T ss_pred HHHEEEeeHHHHHHHHHHHHHHhCcChHHeEEeEEEecCCCceee
Confidence 111222233332233333344467777777666777864344444
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0033 Score=63.59 Aligned_cols=117 Identities=15% Similarity=0.061 Sum_probs=76.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCC-c-----EEEEecCCcccccCCCCCCCCCCCCC-C-CCCcEEEEecCCCHHHHH
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGK-C-----IVRVTDSTQSLQLDPSESNSLLPDSL-S-SGRAEYHQVDVRDISQIK 79 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~-~-----~V~~~D~~~~~~l~r~~~~~~l~~~~-~-~~~v~~~~~Dl~d~~~l~ 79 (520)
++||.|+|++|.+|++++..|...|. . ++..+|+........... -.+.+.. . ..++.. +. ...
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a-~Dl~~~~~~~~~~~~i-----~~--~~y 75 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVV-MELDDCAFPLLAGVVI-----TD--DPN 75 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceee-hhhhhhhhhhcCCcEE-----ec--ChH
Confidence 57999999999999999999987653 2 688988743210011111 0111110 0 011211 11 224
Q ss_pred HHHcCCCEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCC--CCEEEEeec
Q 010005 80 KVLEGASTVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNST 132 (520)
Q Consensus 80 ~~l~~~D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g--vkr~V~~SS 132 (520)
+.++++|+||-+||. .....+.......|+.-.+.+.+...++. -..++.+|.
T Consensus 76 ~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN 131 (326)
T PRK05442 76 VAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGN 131 (326)
T ss_pred HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 678899999999997 33456788999999999999999999953 345666663
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0026 Score=64.82 Aligned_cols=95 Identities=20% Similarity=0.189 Sum_probs=58.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCc--EEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKC--IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~--~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
+|+|+|.||||++|+.+++.|.+++|. +++. +.+....+.. +...+.+....|+.+. .++++
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~--------l~s~~~~g~~---l~~~g~~i~v~d~~~~-----~~~~v 64 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRL--------LASARSAGKE---LSFKGKELKVEDLTTF-----DFSGV 64 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEE--------EEccccCCCe---eeeCCceeEEeeCCHH-----HHcCC
Confidence 479999999999999999999998752 3566 3332221111 1112234555566432 24689
Q ss_pred CEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccc
Q 010005 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (520)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~ 134 (520)
|+||-+.+.. -+..+.....+.|+ ++|=.|+..
T Consensus 65 DvVf~A~g~g---------------~s~~~~~~~~~~G~-~VIDlS~~~ 97 (334)
T PRK14874 65 DIALFSAGGS---------------VSKKYAPKAAAAGA-VVIDNSSAF 97 (334)
T ss_pred CEEEECCChH---------------HHHHHHHHHHhCCC-EEEECCchh
Confidence 9999877531 23445666666776 566666553
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0027 Score=55.62 Aligned_cols=113 Identities=13% Similarity=0.145 Sum_probs=76.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--CCCCC------------CCCCCCCcEEEEec
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--NSLLP------------DSLSSGRAEYHQVD 71 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~--~~~l~------------~~~~~~~v~~~~~D 71 (520)
.+||+|.| .|-+|+.+++.|...|..+++++|.+. ..++.|..- ..... +....-+++.+..+
T Consensus 2 ~~~v~iiG-~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIG-AGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEES-TSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 47899998 899999999999999977899998865 223444321 00100 01112345566677
Q ss_pred CCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccc
Q 010005 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (520)
Q Consensus 72 l~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg 137 (520)
+ +.+...+.++++|+||.+... ......+.+.|++.+. .+|+.++.+.+|
T Consensus 81 ~-~~~~~~~~~~~~d~vi~~~d~--------------~~~~~~l~~~~~~~~~-p~i~~~~~g~~G 130 (135)
T PF00899_consen 81 I-DEENIEELLKDYDIVIDCVDS--------------LAARLLLNEICREYGI-PFIDAGVNGFYG 130 (135)
T ss_dssp C-SHHHHHHHHHTSSEEEEESSS--------------HHHHHHHHHHHHHTT--EEEEEEEETTEE
T ss_pred c-ccccccccccCCCEEEEecCC--------------HHHHHHHHHHHHHcCC-CEEEEEeecCEE
Confidence 7 556778888999999987531 2233457789999987 799888776664
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0014 Score=66.49 Aligned_cols=97 Identities=20% Similarity=0.231 Sum_probs=57.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCc--EEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKC--IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~--~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
+|++|.|+||||++|+.+++.|.+++|- +++.+. .....+ +.+...+ ...++.+.+.. .+++
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~--------s~~~aG---~~l~~~~---~~l~~~~~~~~--~~~~ 66 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLA--------SSESAG---HSVPFAG---KNLRVREVDSF--DFSQ 66 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEE--------CcccCC---CeeccCC---cceEEeeCChH--HhcC
Confidence 3489999999999999999999987652 333421 111111 1111112 12333332211 2478
Q ss_pred CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccc
Q 010005 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135 (520)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~v 135 (520)
+|+||-+.+.. .+..+++.+.+.|+ ++|=.|+..-
T Consensus 67 vD~vFla~p~~---------------~s~~~v~~~~~~G~-~VIDlS~~fR 101 (336)
T PRK05671 67 VQLAFFAAGAA---------------VSRSFAEKARAAGC-SVIDLSGALP 101 (336)
T ss_pred CCEEEEcCCHH---------------HHHHHHHHHHHCCC-eEEECchhhc
Confidence 99999776421 12347778888887 5776776653
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0017 Score=66.25 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=58.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEE-EecCCCHHHHHHHHcCCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH-QVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~-~~Dl~d~~~l~~~l~~~D 86 (520)
|+||+|+||||++|+.+++.|.+....+++.+ ..|......+.+.. +..... ..++.+.+.. ..+++|
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v-------~~~~~~g~~l~~~~--~~~~~~~~~~~~~~~~~--~~~~vD 70 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAV-------TSRSSAGKPLSDVH--PHLRGLVDLVLEPLDPE--ILAGAD 70 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEE-------ECccccCcchHHhC--cccccccCceeecCCHH--HhcCCC
Confidence 58999999999999999999998754576652 12211111111111 111111 1223333322 456899
Q ss_pred EEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccccc
Q 010005 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (520)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vy 136 (520)
+||-+... .....++.++.+.|+ ++|=.|+..-+
T Consensus 71 ~Vf~alP~---------------~~~~~~v~~a~~aG~-~VID~S~~fR~ 104 (343)
T PRK00436 71 VVFLALPH---------------GVSMDLAPQLLEAGV-KVIDLSADFRL 104 (343)
T ss_pred EEEECCCc---------------HHHHHHHHHHHhCCC-EEEECCcccCC
Confidence 99876542 122456667777775 78877776544
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0053 Score=61.90 Aligned_cols=116 Identities=13% Similarity=0.101 Sum_probs=76.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCc-EEEEecCCcccccCCCCCCCCCCCCCC-CCCcEEEEecCCCHHHHHHHH
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSLS-SGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~-~V~~~D~~~~~~l~r~~~~~~l~~~~~-~~~v~~~~~Dl~d~~~l~~~l 82 (520)
++..+||.|+|+ |.||++++..|...|.. ++..+|+.... .... ...+.+... ..++..... | .+.+
T Consensus 3 ~~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~--~~g~-~~Dl~~~~~~~~~~~i~~~---~----~~~~ 71 (315)
T PRK00066 3 KKQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEK--AEGD-AMDLSHAVPFTSPTKIYAG---D----YSDC 71 (315)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCch--hHHH-HHHHHhhccccCCeEEEeC---C----HHHh
Confidence 345689999997 99999999999988843 69998875421 0000 001111100 012223221 2 2347
Q ss_pred cCCCEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEee
Q 010005 83 EGASTVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (520)
Q Consensus 83 ~~~D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~S 131 (520)
+++|+||-.||. .....+.......|+.-.+.+++.+++++.+ .++.+|
T Consensus 72 ~~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 72 KDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred CCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 899999999998 3344677889999999999999999998743 444444
|
|
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00074 Score=66.31 Aligned_cols=77 Identities=12% Similarity=0.084 Sum_probs=54.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
+...++|-||+||.|..++++|..+|+ +-.+ -.|+..+ +......-+-+.-..++.+++.+++.+.+++
T Consensus 5 ~e~d~iiYGAtGy~G~lvae~l~~~g~-~~aL--------AgRs~~k--l~~l~~~LG~~~~~~p~~~p~~~~~~~~~~~ 73 (382)
T COG3268 5 REYDIIIYGATGYAGGLVAEYLAREGL-TAAL--------AGRSSAK--LDALRASLGPEAAVFPLGVPAALEAMASRTQ 73 (382)
T ss_pred cceeEEEEccccchhHHHHHHHHHcCC-chhh--------ccCCHHH--HHHHHHhcCccccccCCCCHHHHHHHHhcce
Confidence 346799999999999999999999996 4333 3565441 1111111123344445555889999999999
Q ss_pred EEEEcccC
Q 010005 87 TVFYVDAT 94 (520)
Q Consensus 87 ~Vih~aa~ 94 (520)
+|+||+|+
T Consensus 74 VVlncvGP 81 (382)
T COG3268 74 VVLNCVGP 81 (382)
T ss_pred EEEecccc
Confidence 99999998
|
|
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0014 Score=65.00 Aligned_cols=92 Identities=18% Similarity=0.234 Sum_probs=66.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHh----cCCcEEEEecCCcccccCCCCCCCCCCCCC---------CCCCcEEEEecCCCH
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLE----LGKCIVRVTDSTQSLQLDPSESNSLLPDSL---------SSGRAEYHQVDVRDI 75 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~----~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~---------~~~~v~~~~~Dl~d~ 75 (520)
=-++|.||+||-|..+++++++ .| ...-+ ..|++.+ +.+-+ .-+...++.+|..|+
T Consensus 6 yDvVIyGASGfTG~yivee~v~~~~~~~-~slav--------AGRn~~K--L~~vL~~~~~k~~~~ls~~~i~i~D~~n~ 74 (423)
T KOG2733|consen 6 YDVVIYGASGFTGKYIVEEAVSSQVFEG-LSLAV--------AGRNEKK--LQEVLEKVGEKTGTDLSSSVILIADSANE 74 (423)
T ss_pred eeEEEEccccccceeeHHHHhhhhcccC-ceEEE--------ecCCHHH--HHHHHHHHhhccCCCcccceEEEecCCCH
Confidence 3589999999999999999998 44 35555 4565431 11100 012334889999999
Q ss_pred HHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCC
Q 010005 76 SQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKV 124 (520)
Q Consensus 76 ~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gv 124 (520)
+++.+..+.+.+|+||+|+-.... .++++||.+.|.
T Consensus 75 ~Sl~emak~~~vivN~vGPyR~hG-------------E~VVkacienG~ 110 (423)
T KOG2733|consen 75 ASLDEMAKQARVIVNCVGPYRFHG-------------EPVVKACIENGT 110 (423)
T ss_pred HHHHHHHhhhEEEEeccccceecC-------------cHHHHHHHHcCC
Confidence 999999999999999999821111 258899999986
|
|
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0016 Score=62.39 Aligned_cols=62 Identities=18% Similarity=0.302 Sum_probs=42.7
Q ss_pred cCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHH-------cCCCE
Q 010005 15 NGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL-------EGAST 87 (520)
Q Consensus 15 GatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l-------~~~D~ 87 (520)
.++|.+|.+++++|.++| ++|++++ +... +.. .....+|+.|.++..+++ .++|+
T Consensus 22 ~SSGgIG~AIA~~la~~G-a~Vvlv~--------~~~~---l~~------~~~~~~Dv~d~~s~~~l~~~v~~~~g~iDi 83 (227)
T TIGR02114 22 HSTGHLGKIITETFLSAG-HEVTLVT--------TKRA---LKP------EPHPNLSIREIETTKDLLITLKELVQEHDI 83 (227)
T ss_pred CcccHHHHHHHHHHHHCC-CEEEEEc--------Chhh---ccc------ccCCcceeecHHHHHHHHHHHHHHcCCCCE
Confidence 348999999999999999 6998843 2111 100 001347888876655443 35899
Q ss_pred EEEcccC
Q 010005 88 VFYVDAT 94 (520)
Q Consensus 88 Vih~aa~ 94 (520)
+||+||.
T Consensus 84 LVnnAgv 90 (227)
T TIGR02114 84 LIHSMAV 90 (227)
T ss_pred EEECCEe
Confidence 9999997
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0058 Score=62.22 Aligned_cols=115 Identities=16% Similarity=0.178 Sum_probs=77.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCCC----------------CCCCCCCCCCCcEEE
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSESN----------------SLLPDSLSSGRAEYH 68 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~~----------------~~l~~~~~~~~v~~~ 68 (520)
+..+|+|.| .|.+|++++..|...|..+++++|.+. ..++.|..-- ..+.+....-.++.+
T Consensus 23 ~~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~ 101 (339)
T PRK07688 23 REKHVLIIG-AGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI 101 (339)
T ss_pred cCCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 457899998 599999999999999977899999864 1123333100 011111112234556
Q ss_pred EecCCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccccccc
Q 010005 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFD 138 (520)
Q Consensus 69 ~~Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~ 138 (520)
..++. .+.+.++++++|+||.+.. ++ ..-..+-++|.+.++ .+|+.|+...||.
T Consensus 102 ~~~~~-~~~~~~~~~~~DlVid~~D------n~--------~~r~~ln~~~~~~~i-P~i~~~~~g~~G~ 155 (339)
T PRK07688 102 VQDVT-AEELEELVTGVDLIIDATD------NF--------ETRFIVNDAAQKYGI-PWIYGACVGSYGL 155 (339)
T ss_pred eccCC-HHHHHHHHcCCCEEEEcCC------CH--------HHHHHHHHHHHHhCC-CEEEEeeeeeeeE
Confidence 66764 4567788999999998752 22 223357788999986 6999998888764
|
|
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0024 Score=66.02 Aligned_cols=101 Identities=12% Similarity=0.116 Sum_probs=67.4
Q ss_pred CCCCeEEEEcC----------------CChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEE
Q 010005 6 AIPRTCVVLNG----------------RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69 (520)
Q Consensus 6 ~~~~~ILVtGa----------------tGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~ 69 (520)
.++++|||||| +|.+|..+++.|.++| .+|+. +.+..... .... ...
T Consensus 183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~G-a~V~~--------~~g~~~~~------~~~~--~~~ 245 (390)
T TIGR00521 183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRG-ADVTL--------ITGPVSLL------TPPG--VKS 245 (390)
T ss_pred cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCC-CEEEE--------eCCCCccC------CCCC--cEE
Confidence 46799999999 4789999999999999 59888 34333210 0112 256
Q ss_pred ecCCCHHHH-HHHH----cCCCEEEEcccCCCCC------c---chhhHHhhhHHHHHHHHHHHHHCC
Q 010005 70 VDVRDISQI-KKVL----EGASTVFYVDATDLNT------D---DFYNCYMIIVQGAKNVVTACRECK 123 (520)
Q Consensus 70 ~Dl~d~~~l-~~~l----~~~D~Vih~aa~~~~~------~---~~~~~~~~Nv~gt~~ll~aa~~~g 123 (520)
.|+.+.+++ ++++ .++|++|++||..... . ........|..-+-.+++..++..
T Consensus 246 ~~v~~~~~~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~~ 313 (390)
T TIGR00521 246 IKVSTAEEMLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRKIK 313 (390)
T ss_pred EEeccHHHHHHHHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHhhC
Confidence 788888777 4444 3589999999982110 0 001223466677777888777654
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0044 Score=63.49 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEe
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~ 39 (520)
|++||+|+||+|++|+.+++.|.+....+++++
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~ 34 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTAL 34 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEE
Confidence 458999999999999999999998775578875
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0059 Score=57.19 Aligned_cols=114 Identities=11% Similarity=0.105 Sum_probs=72.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCC-----CCC---------CCCCCCCCCCcEEEEe
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSE-----SNS---------LLPDSLSSGRAEYHQV 70 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~-----~~~---------~l~~~~~~~~v~~~~~ 70 (520)
+..+|+|.|+.| +|+++++.|...|..+++++|.+. ..++.|.- +-+ .+.+..+.-.++.+..
T Consensus 20 ~~s~VlIiG~gg-lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~ 98 (197)
T cd01492 20 RSARILLIGLKG-LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTD 98 (197)
T ss_pred HhCcEEEEcCCH-HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEec
Confidence 357899999666 999999999999987899998764 12233321 000 0111111223444444
Q ss_pred cCCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccccccc
Q 010005 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFD 138 (520)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~ 138 (520)
.+.+ ...+.++++|+||.+.. +. ..-..+-++|++.++ .+|+.++.+.||.
T Consensus 99 ~~~~--~~~~~~~~~dvVi~~~~------~~--------~~~~~ln~~c~~~~i-p~i~~~~~G~~G~ 149 (197)
T cd01492 99 DISE--KPEEFFSQFDVVVATEL------SR--------AELVKINELCRKLGV-KFYATGVHGLFGF 149 (197)
T ss_pred Cccc--cHHHHHhCCCEEEECCC------CH--------HHHHHHHHHHHHcCC-CEEEEEecCCEEE
Confidence 5542 23566789999996642 12 222446688999997 6899998887753
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0065 Score=60.93 Aligned_cols=117 Identities=18% Similarity=0.098 Sum_probs=78.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~ 87 (520)
|||.|+|++|.||++++..|...|. .+++++|+. ..+... -.+.+.. ......... ..+++.+.++++|+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~----~a~g~a-lDL~~~~--~~~~i~~~~--~~~~~y~~~~daDi 71 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV----NTPGVA-ADLSHIN--TPAKVTGYL--GPEELKKALKGADV 71 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC----ccceee-hHhHhCC--CcceEEEec--CCCchHHhcCCCCE
Confidence 5899999999999999999988874 479998874 111111 0111111 111121110 11234577889999
Q ss_pred EEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEeeccc
Q 010005 88 VFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTAD 134 (520)
Q Consensus 88 Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~SS~~ 134 (520)
||-+||. .....+.....+.|..-.+.+.+..++++.+ .++.+|.+.
T Consensus 72 vvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv 120 (310)
T cd01337 72 VVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120 (310)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 9999998 3345678899999999999999999998743 555555443
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0019 Score=74.12 Aligned_cols=99 Identities=23% Similarity=0.190 Sum_probs=67.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcE-------------EEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCI-------------VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVR 73 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~-------------V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~ 73 (520)
.+++|+|.|+ |++|+..++.|.+.+..+ |.+.|.... +. ..+.+. .++++.+..|+.
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~----~a---~~la~~--~~~~~~v~lDv~ 637 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLK----DA---KETVEG--IENAEAVQLDVS 637 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHH----HH---HHHHHh--cCCCceEEeecC
Confidence 4789999995 999999999998864333 777554321 00 011111 135778999999
Q ss_pred CHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEee
Q 010005 74 DISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131 (520)
Q Consensus 74 d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~S 131 (520)
|.+++.++++++|+||.+..... ...++++|.++|+ +++-.|
T Consensus 638 D~e~L~~~v~~~DaVIsalP~~~---------------H~~VAkaAieaGk-Hvv~ek 679 (1042)
T PLN02819 638 DSESLLKYVSQVDVVISLLPASC---------------HAVVAKACIELKK-HLVTAS 679 (1042)
T ss_pred CHHHHHHhhcCCCEEEECCCchh---------------hHHHHHHHHHcCC-CEEECc
Confidence 99999999999999999986411 1346666666664 454443
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0063 Score=61.95 Aligned_cols=115 Identities=10% Similarity=0.122 Sum_probs=76.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC-----C-----------CCCCCCCCCCCcEEE
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES-----N-----------SLLPDSLSSGRAEYH 68 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~-----~-----------~~l~~~~~~~~v~~~ 68 (520)
+.++|+|.|+ |-+|+++++.|...|..+++++|.+. ..++.|..- . ..+.+....-.++.+
T Consensus 23 ~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 23 REKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 4679999995 66999999999999977899988864 112333310 0 011111122345566
Q ss_pred EecCCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccccccc
Q 010005 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFD 138 (520)
Q Consensus 69 ~~Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~ 138 (520)
..|+. .+.+.++++++|+||.+.. +++ .-..+-++|++.++ .+|+.+..+.+|.
T Consensus 102 ~~~~~-~~~~~~~~~~~DlVid~~D------~~~--------~r~~in~~~~~~~i-p~i~~~~~g~~G~ 155 (338)
T PRK12475 102 VTDVT-VEELEELVKEVDLIIDATD------NFD--------TRLLINDLSQKYNI-PWIYGGCVGSYGV 155 (338)
T ss_pred eccCC-HHHHHHHhcCCCEEEEcCC------CHH--------HHHHHHHHHHHcCC-CEEEEEecccEEE
Confidence 67774 4567888999999997762 222 11235678888987 6889888777763
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0061 Score=60.65 Aligned_cols=113 Identities=19% Similarity=0.124 Sum_probs=74.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCc-EEEEecCCcccccCCCCCCCCCCCCCCC-CCcEEEEecCCCHHHHHHHHcCCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSLSS-GRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~-~V~~~D~~~~~~l~r~~~~~~l~~~~~~-~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
+||.|+|+ |.||+.++..|+.++.. +++++|+... ...... -.+.+.... ..-..+.+| .| .+.++++|
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~--~~~G~a-~DL~~~~~~~~~~~~i~~~-~~----y~~~~~aD 71 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEE--KAEGVA-LDLSHAAAPLGSDVKITGD-GD----YEDLKGAD 71 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccc--cccchh-cchhhcchhccCceEEecC-CC----hhhhcCCC
Confidence 58999999 99999999999887654 8999887621 111110 111111100 011222332 22 45678999
Q ss_pred EEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEe
Q 010005 87 TVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130 (520)
Q Consensus 87 ~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~ 130 (520)
+|+-.||. ...........+.|..-...+.+...+.+.+-++.+
T Consensus 72 iVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlV 116 (313)
T COG0039 72 IVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLV 116 (313)
T ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEE
Confidence 99999988 334467888999999999999999999875444433
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.009 Score=60.01 Aligned_cols=113 Identities=16% Similarity=0.110 Sum_probs=75.5
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCEE
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~V 88 (520)
||.|+|++|.||++++..|..++. .+++++|+... ....-.+.+.. ......... +.+++.+.++++|+|
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a-----~g~a~DL~~~~--~~~~i~~~~--~~~~~~~~~~daDiv 71 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGA-----AGVAADLSHIP--TAASVKGFS--GEEGLENALKGADVV 71 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCC-----cEEEchhhcCC--cCceEEEec--CCCchHHHcCCCCEE
Confidence 689999999999999999988874 47999887430 01111111111 111222101 112245688999999
Q ss_pred EEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEee
Q 010005 89 FYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (520)
Q Consensus 89 ih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~S 131 (520)
|-.||. .....+.......|+.-.+.+.+...+++.+ .++.+|
T Consensus 72 vitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvs 116 (312)
T TIGR01772 72 VIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVIT 116 (312)
T ss_pred EEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEec
Confidence 999998 3445678889999999999999999998743 344444
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0018 Score=55.82 Aligned_cols=92 Identities=15% Similarity=0.147 Sum_probs=53.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEE-EecCCcccccCCCCCCCCCCCCCC--CCCcEEEEecCCCHHHHHHHHcCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVR-VTDSTQSLQLDPSESNSLLPDSLS--SGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~-~~D~~~~~~l~r~~~~~~l~~~~~--~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
|||.|.|++|-.|+.+++.+.+....++. ++|+..+..... ...+... ..++.. .++++++++.+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~-----d~g~~~~~~~~~~~v-------~~~l~~~~~~~ 68 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGK-----DVGELAGIGPLGVPV-------TDDLEELLEEA 68 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTS-----BCHHHCTSST-SSBE-------BS-HHHHTTH-
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccc-----hhhhhhCcCCccccc-------chhHHHhcccC
Confidence 58999999999999999999995435655 433322100000 0000000 111111 14567778789
Q ss_pred CEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEE
Q 010005 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (520)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V 128 (520)
|+||++.. ...+...++.|.++|+ .+|
T Consensus 69 DVvIDfT~---------------p~~~~~~~~~~~~~g~-~~V 95 (124)
T PF01113_consen 69 DVVIDFTN---------------PDAVYDNLEYALKHGV-PLV 95 (124)
T ss_dssp SEEEEES----------------HHHHHHHHHHHHHHT--EEE
T ss_pred CEEEEcCC---------------hHHhHHHHHHHHhCCC-CEE
Confidence 99998863 3445668888888987 444
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0048 Score=59.10 Aligned_cols=73 Identities=21% Similarity=0.258 Sum_probs=55.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC-CCCCcEEEEecCCCHHHHHHH-HcCCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKV-LEGAS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~-~~~~v~~~~~Dl~d~~~l~~~-l~~~D 86 (520)
|+++|.| .|-+|+++++.|.+.|| +|+++|.+... ..+.. .......+.+|-+|++.+.++ ++++|
T Consensus 1 m~iiIiG-~G~vG~~va~~L~~~g~-~Vv~Id~d~~~----------~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD 68 (225)
T COG0569 1 MKIIIIG-AGRVGRSVARELSEEGH-NVVLIDRDEER----------VEEFLADELDTHVVIGDATDEDVLEEAGIDDAD 68 (225)
T ss_pred CEEEEEC-CcHHHHHHHHHHHhCCC-ceEEEEcCHHH----------HHHHhhhhcceEEEEecCCCHHHHHhcCCCcCC
Confidence 6788887 89999999999999995 89986665421 00100 123578899999999999988 78899
Q ss_pred EEEEccc
Q 010005 87 TVFYVDA 93 (520)
Q Consensus 87 ~Vih~aa 93 (520)
+++=+.+
T Consensus 69 ~vva~t~ 75 (225)
T COG0569 69 AVVAATG 75 (225)
T ss_pred EEEEeeC
Confidence 9995554
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0075 Score=59.02 Aligned_cols=87 Identities=16% Similarity=0.135 Sum_probs=53.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEE-ecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRV-TDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~-~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
+|||.|+|++|.+|+.+++.+.+....++++ +|.. +.... .. -..++...+++.++++++|
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~--------~~~~~--~~--------~~~~i~~~~dl~~ll~~~D 62 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRP--------GSPLV--GQ--------GALGVAITDDLEAVLADAD 62 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC--------Ccccc--cc--------CCCCccccCCHHHhccCCC
Confidence 3799999999999999999988753246554 4432 22100 00 1112323344566677899
Q ss_pred EEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEE
Q 010005 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (520)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V 128 (520)
+||+++.+ .....+++.|.++|+ ++|
T Consensus 63 vVid~t~p---------------~~~~~~~~~al~~G~-~vv 88 (257)
T PRK00048 63 VLIDFTTP---------------EATLENLEFALEHGK-PLV 88 (257)
T ss_pred EEEECCCH---------------HHHHHHHHHHHHcCC-CEE
Confidence 99999842 122456777777876 444
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0033 Score=54.50 Aligned_cols=94 Identities=13% Similarity=0.083 Sum_probs=68.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
+.++|++.| .| -|.+++..|.+.| ++|+++|+.... . +......++.+.+|+.+++ .++-+++|
T Consensus 16 ~~~kileIG-~G-fG~~vA~~L~~~G-~~ViaIDi~~~a---V--------~~a~~~~~~~v~dDlf~p~--~~~y~~a~ 79 (134)
T PRK04148 16 KNKKIVELG-IG-FYFKVAKKLKESG-FDVIVIDINEKA---V--------EKAKKLGLNAFVDDLFNPN--LEIYKNAK 79 (134)
T ss_pred cCCEEEEEE-ec-CCHHHHHHHHHCC-CEEEEEECCHHH---H--------HHHHHhCCeEEECcCCCCC--HHHHhcCC
Confidence 458999998 66 7889999999999 599999886531 0 0011235789999999987 66677899
Q ss_pred EEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEe
Q 010005 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130 (520)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~ 130 (520)
.|+-+ +.|.+++ ..+++.|++.++.-+|..
T Consensus 80 liysi-------rpp~el~-------~~~~~la~~~~~~~~i~~ 109 (134)
T PRK04148 80 LIYSI-------RPPRDLQ-------PFILELAKKINVPLIIKP 109 (134)
T ss_pred EEEEe-------CCCHHHH-------HHHHHHHHHcCCCEEEEc
Confidence 99833 4443333 468999999998655543
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.007 Score=61.20 Aligned_cols=117 Identities=10% Similarity=0.080 Sum_probs=76.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC--CCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~--~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
+.+||.|+|| |.+|+.++..|...|..+|+.+|+..... .... -.+... ....... +.+ -.| .+ .+++
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~--~g~~-lDl~~~~~~~~~~~~-i~~-~~d---~~-~l~~ 73 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVP--QGKA-LDLKHFSTLVGSNIN-ILG-TNN---YE-DIKD 73 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccc--hhHH-HHHhhhccccCCCeE-EEe-CCC---HH-HhCC
Confidence 4579999996 99999999999888855799988765321 1000 001000 0011111 121 112 33 6789
Q ss_pred CCEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCE-EEEeecc
Q 010005 85 ASTVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVRR-LVYNSTA 133 (520)
Q Consensus 85 ~D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr-~V~~SS~ 133 (520)
+|+||-+++. .............|..-.+.+++.+.+...+- ++.+|..
T Consensus 74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP 124 (319)
T PTZ00117 74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNP 124 (319)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCh
Confidence 9999999987 33345677888999999999999999887444 6666543
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0089 Score=56.27 Aligned_cols=114 Identities=13% Similarity=0.137 Sum_probs=72.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--C------------CCCCCCCCCCCcEEEEe
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--N------------SLLPDSLSSGRAEYHQV 70 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~--~------------~~l~~~~~~~~v~~~~~ 70 (520)
+..+|+|.| .|-+|+++++.|...|..+++++|.+. ..++.|..- . ..+.+....-.++.+..
T Consensus 20 ~~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 98 (202)
T TIGR02356 20 LNSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE 98 (202)
T ss_pred cCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence 457899998 889999999999999966899988763 112333210 0 01111111122333444
Q ss_pred cCCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccc
Q 010005 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (520)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg 137 (520)
++ +.+.+.+.++++|+||.+.. ++ ..-..+-++|++.++ .+|+.++.+.+|
T Consensus 99 ~i-~~~~~~~~~~~~D~Vi~~~d------~~--------~~r~~l~~~~~~~~i-p~i~~~~~g~~G 149 (202)
T TIGR02356 99 RV-TAENLELLINNVDLVLDCTD------NF--------ATRYLINDACVALGT-PLISAAVVGFGG 149 (202)
T ss_pred cC-CHHHHHHHHhCCCEEEECCC------CH--------HHHHHHHHHHHHcCC-CEEEEEeccCeE
Confidence 44 34567788899999997753 12 222346788999986 689988776664
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0029 Score=67.24 Aligned_cols=76 Identities=22% Similarity=0.194 Sum_probs=52.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
.+.++|+|+|+++ +|..+++.|+++| ++|++.|......+ . ...+.+...++..+.+|..| +...++
T Consensus 3 ~~~k~v~iiG~g~-~G~~~A~~l~~~G-~~V~~~d~~~~~~~-----~-~~~~~l~~~~~~~~~~~~~~-----~~~~~~ 69 (450)
T PRK14106 3 LKGKKVLVVGAGV-SGLALAKFLKKLG-AKVILTDEKEEDQL-----K-EALEELGELGIELVLGEYPE-----EFLEGV 69 (450)
T ss_pred cCCCEEEEECCCH-HHHHHHHHHHHCC-CEEEEEeCCchHHH-----H-HHHHHHHhcCCEEEeCCcch-----hHhhcC
Confidence 3568999999888 9999999999999 69999776431101 0 00011122356778888766 335679
Q ss_pred CEEEEcccC
Q 010005 86 STVFYVDAT 94 (520)
Q Consensus 86 D~Vih~aa~ 94 (520)
|+||+.++.
T Consensus 70 d~vv~~~g~ 78 (450)
T PRK14106 70 DLVVVSPGV 78 (450)
T ss_pred CEEEECCCC
Confidence 999999886
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.026 Score=54.20 Aligned_cols=114 Identities=15% Similarity=0.083 Sum_probs=74.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC-----CC---------CCCCCCCCCCcEEEEe
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES-----NS---------LLPDSLSSGRAEYHQV 70 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~-----~~---------~l~~~~~~~~v~~~~~ 70 (520)
+..+|+|.| .|-+|+++++.|...|..+++++|.+. ..++.|..- -+ .+.+....-+++.+..
T Consensus 20 ~~~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~ 98 (228)
T cd00757 20 KNARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE 98 (228)
T ss_pred hCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence 457999998 889999999999999987899988764 112333210 00 0001111123455555
Q ss_pred cCCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccc
Q 010005 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (520)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg 137 (520)
++ +.+.+.+.++++|+||.+... + ..-..+-++|++.++ .+|+.+....+|
T Consensus 99 ~i-~~~~~~~~~~~~DvVi~~~d~------~--------~~r~~l~~~~~~~~i-p~i~~g~~g~~g 149 (228)
T cd00757 99 RL-DAENAEELIAGYDLVLDCTDN------F--------ATRYLINDACVKLGK-PLVSGAVLGFEG 149 (228)
T ss_pred ee-CHHHHHHHHhCCCEEEEcCCC------H--------HHHHHHHHHHHHcCC-CEEEEEeccCEE
Confidence 55 345677888999999987631 2 122457788999986 788888776654
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.012 Score=59.90 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=58.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCc--EEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKC--IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~--~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
+.++|.|.||||++|+.+++.|.+++|. ++..+. -.|+..+ .+. ..+.+....++. . +.+++
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~la------s~rsaGk-~~~----~~~~~~~v~~~~-~----~~~~~ 69 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLA------SARSAGK-KVT----FEGRDYTVEELT-E----DSFDG 69 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEE------ccCCCCC-eee----ecCceeEEEeCC-H----HHHcC
Confidence 4689999999999999999999997752 344421 1233221 111 112333333442 2 23578
Q ss_pred CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccc
Q 010005 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135 (520)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~v 135 (520)
+|+||-+++.. .+..+...+.+.|+ ++|=.|+..-
T Consensus 70 ~D~vf~a~p~~---------------~s~~~~~~~~~~g~-~VIDlS~~fR 104 (344)
T PLN02383 70 VDIALFSAGGS---------------ISKKFGPIAVDKGA-VVVDNSSAFR 104 (344)
T ss_pred CCEEEECCCcH---------------HHHHHHHHHHhCCC-EEEECCchhh
Confidence 99999777532 12345555666776 6777776643
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.012 Score=56.62 Aligned_cols=95 Identities=19% Similarity=0.104 Sum_probs=54.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
++|||.|.|++|-.|+.+++.+.+.++.++.+. +.|.+....-...-.-.+......-+.|. +.....++|
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa-------~~~~~~~~~g~d~ge~~g~~~~gv~v~~~--~~~~~~~~D 71 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAA-------FDRPGSLSLGSDAGELAGLGLLGVPVTDD--LLLVKADAD 71 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEE-------EecCCccccccchhhhccccccCceeecc--hhhcccCCC
Confidence 368999999999999999999999875564431 33433210000000000111111111111 344456789
Q ss_pred EEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCC
Q 010005 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR 125 (520)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk 125 (520)
++|.+..+ .++...++.|.+++++
T Consensus 72 V~IDFT~P---------------~~~~~~l~~~~~~~~~ 95 (266)
T COG0289 72 VLIDFTTP---------------EATLENLEFALEHGKP 95 (266)
T ss_pred EEEECCCc---------------hhhHHHHHHHHHcCCC
Confidence 99988753 2345677888888864
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.022 Score=57.60 Aligned_cols=120 Identities=8% Similarity=0.040 Sum_probs=75.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
+.+||.|+| +|.+|+.++..+...|..+|+.+|+.......+.-+.... ............. .| . +.++++|
T Consensus 5 ~~~KI~IIG-aG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~-~~~~~~~~~I~~~--~d---~-~~l~~aD 76 (321)
T PTZ00082 5 KRRKISLIG-SGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHS-NVIAGSNSKVIGT--NN---Y-EDIAGSD 76 (321)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhh-hhccCCCeEEEEC--CC---H-HHhCCCC
Confidence 357999999 6999999999999888557999888654210000000000 0001111222210 12 2 3578999
Q ss_pred EEEEcccCC-CCCc-----chhhHHhhhHHHHHHHHHHHHHCCCC-EEEEeeccc
Q 010005 87 TVFYVDATD-LNTD-----DFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTAD 134 (520)
Q Consensus 87 ~Vih~aa~~-~~~~-----~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~SS~~ 134 (520)
+||.+++.. .... +.......|+.-.+.+++.+.+...+ .++.+|...
T Consensus 77 iVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~ 131 (321)
T PTZ00082 77 VVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPL 131 (321)
T ss_pred EEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 999999872 2222 55667888999999999999988754 577666543
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0073 Score=61.80 Aligned_cols=102 Identities=14% Similarity=0.168 Sum_probs=59.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEe-cCCcccccCCCCCCCCCCCCCCCCCcEEE-EecCCCHHHHHHHHcCCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVT-DSTQSLQLDPSESNSLLPDSLSSGRAEYH-QVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~-D~~~~~~l~r~~~~~~l~~~~~~~~v~~~-~~Dl~d~~~l~~~l~~~D 86 (520)
|+|.|.||||++|..+++.|.+....+++.+ +... +.. ..+.... +.+... ..++.+. +..++++++|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~------sag-k~~~~~~--~~l~~~~~~~~~~~-~~~~~~~~~D 70 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE------SAG-KPVSEVH--PHLRGLVDLNLEPI-DEEEIAEDAD 70 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch------hcC-CChHHhC--ccccccCCceeecC-CHHHhhcCCC
Confidence 5899999999999999999998754577742 3221 111 1111101 111111 1112211 1233445899
Q ss_pred EEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccccc
Q 010005 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (520)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vy 136 (520)
+||-+.... .+..++..+.+.|+ ++|=.|+..=+
T Consensus 71 vVf~alP~~---------------~s~~~~~~~~~~G~-~VIDlS~~fR~ 104 (346)
T TIGR01850 71 VVFLALPHG---------------VSAELAPELLAAGV-KVIDLSADFRL 104 (346)
T ss_pred EEEECCCch---------------HHHHHHHHHHhCCC-EEEeCChhhhc
Confidence 999776522 33567777777884 88888877543
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.018 Score=55.91 Aligned_cols=113 Identities=14% Similarity=0.100 Sum_probs=72.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC-----C---------CCCCCCCCCCCcEEEEe
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES-----N---------SLLPDSLSSGRAEYHQV 70 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~-----~---------~~l~~~~~~~~v~~~~~ 70 (520)
+..+|+|.|+ |-+|+++++.|...|..+++++|.+. ..++.|..- - ..+.+....-.++.+..
T Consensus 31 ~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~ 109 (245)
T PRK05690 31 KAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINA 109 (245)
T ss_pred cCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEec
Confidence 3579999986 99999999999999977899988765 112333210 0 00111111223445555
Q ss_pred cCCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccccc
Q 010005 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (520)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vy 136 (520)
.+. .+.+.+.++++|+||.+.. ++ ..-..+-++|+++++ .+|+.++...+
T Consensus 110 ~i~-~~~~~~~~~~~DiVi~~~D------~~--------~~r~~ln~~~~~~~i-p~v~~~~~g~~ 159 (245)
T PRK05690 110 RLD-DDELAALIAGHDLVLDCTD------NV--------ATRNQLNRACFAAKK-PLVSGAAIRME 159 (245)
T ss_pred cCC-HHHHHHHHhcCCEEEecCC------CH--------HHHHHHHHHHHHhCC-EEEEeeeccCC
Confidence 553 4557788899999998763 22 222346788999986 68887665444
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.015 Score=51.30 Aligned_cols=111 Identities=13% Similarity=0.141 Sum_probs=69.7
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCCC--C------------CCCCCCCCCCcEEEEecCC
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSESN--S------------LLPDSLSSGRAEYHQVDVR 73 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~~--~------------~l~~~~~~~~v~~~~~Dl~ 73 (520)
+|+|.| .|-+|+++++.|...|..+++++|.+. ..++.|..-- . .+.+..+.-.++.+..++.
T Consensus 1 ~VliiG-~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVG-LGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS 79 (143)
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence 588998 599999999999999977899988763 1122222110 0 0001111123344555554
Q ss_pred CHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccc
Q 010005 74 DISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (520)
Q Consensus 74 d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg 137 (520)
+. ...+.+.++|+||.+... ......+.++|++.++ .+|..++...+|
T Consensus 80 ~~-~~~~~~~~~diVi~~~d~--------------~~~~~~l~~~~~~~~i-~~i~~~~~g~~g 127 (143)
T cd01483 80 ED-NLDDFLDGVDLVIDAIDN--------------IAVRRALNRACKELGI-PVIDAGGLGLGG 127 (143)
T ss_pred hh-hHHHHhcCCCEEEECCCC--------------HHHHHHHHHHHHHcCC-CEEEEcCCCcEE
Confidence 33 346778899999987642 2234567789999986 688877765443
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.023 Score=54.94 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=72.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--CCCC------------CCCCCCCCcEEEEe
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--NSLL------------PDSLSSGRAEYHQV 70 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~--~~~l------------~~~~~~~~v~~~~~ 70 (520)
+..+|+|.| .|-+|++++..|...|..+++++|.+. ..++.|+.- .... .+....-.++.+..
T Consensus 23 ~~~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~ 101 (240)
T TIGR02355 23 KASRVLIVG-LGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINA 101 (240)
T ss_pred hCCcEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence 357899998 888999999999999977899988765 112333210 0000 00011122334444
Q ss_pred cCCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccc
Q 010005 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (520)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg 137 (520)
.+ +.+.+.+.++++|+||.+.. +++ ....+-++|++.++ .+|+.++...+|
T Consensus 102 ~i-~~~~~~~~~~~~DlVvd~~D------~~~--------~r~~ln~~~~~~~i-p~v~~~~~g~~G 152 (240)
T TIGR02355 102 KL-DDAELAALIAEHDIVVDCTD------NVE--------VRNQLNRQCFAAKV-PLVSGAAIRMEG 152 (240)
T ss_pred cC-CHHHHHHHhhcCCEEEEcCC------CHH--------HHHHHHHHHHHcCC-CEEEEEecccEe
Confidence 44 34567788899999998763 222 22446688999987 688877666554
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.026 Score=56.67 Aligned_cols=111 Identities=13% Similarity=0.145 Sum_probs=73.1
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCC--CC-CCCcEEEEecCCCHHHHHHHHcCC
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDS--LS-SGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~--~~-~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
||.|.|+ |.||+.++..|+.++. .+++.+|+... ..+... ..+.+. +. ..++....+| .+.++++
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~--~a~g~a-~DL~~~~~~~~~~~~~i~~~~-------y~~~~~a 69 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEG--VAEGEA-LDFHHATALTYSTNTKIRAGD-------YDDCADA 69 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcc--hhhHHH-HHHHhhhccCCCCCEEEEECC-------HHHhCCC
Confidence 5889997 9999999999998874 36999887542 111111 011111 11 1133444333 3567899
Q ss_pred CEEEEcccCC-CCCcc--hhhHHhhhHHHHHHHHHHHHHCCCCE-EEEee
Q 010005 86 STVFYVDATD-LNTDD--FYNCYMIIVQGAKNVVTACRECKVRR-LVYNS 131 (520)
Q Consensus 86 D~Vih~aa~~-~~~~~--~~~~~~~Nv~gt~~ll~aa~~~gvkr-~V~~S 131 (520)
|+||-.||.. ....+ ....+..|+.-.+.+.+.+.+++..- ++.+|
T Consensus 70 DivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvs 119 (307)
T cd05290 70 DIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILIT 119 (307)
T ss_pred CEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 9999999983 22233 47889999999999999999998543 44444
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0029 Score=63.09 Aligned_cols=83 Identities=7% Similarity=0.124 Sum_probs=54.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCC--CCCcEEEEecCCCHHHHHHHHcC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS--SGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~--~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
++++++|+|| |-+|++++..|.+.|..+|+++++.... ..|. ..+.+.+. ........+|+.|.+++.+.++.
T Consensus 125 ~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~-~~~a---~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~ 199 (289)
T PRK12548 125 KGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDF-YERA---EQTAEKIKQEVPECIVNVYDLNDTEKLKAEIAS 199 (289)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchH-HHHH---HHHHHHHhhcCCCceeEEechhhhhHHHhhhcc
Confidence 4689999998 8999999999999996459995543200 0000 01111111 12344566888888788888888
Q ss_pred CCEEEEcccC
Q 010005 85 ASTVFYVDAT 94 (520)
Q Consensus 85 ~D~Vih~aa~ 94 (520)
+|+|||+...
T Consensus 200 ~DilINaTp~ 209 (289)
T PRK12548 200 SDILVNATLV 209 (289)
T ss_pred CCEEEEeCCC
Confidence 8999987755
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0099 Score=60.58 Aligned_cols=92 Identities=16% Similarity=0.259 Sum_probs=56.0
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCCcE--EEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCE
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGKCI--VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~~~--V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~ 87 (520)
+|+|.||+|++|+.|++.|.+++|.. +.. +.+....+. .+...+.+....|+. ...++++|+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~--------~as~~~~g~---~~~~~~~~~~~~~~~-----~~~~~~~D~ 64 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVL--------LASDRSAGR---KVTFKGKELEVNEAK-----IESFEGIDI 64 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEE--------EeccccCCC---eeeeCCeeEEEEeCC-----hHHhcCCCE
Confidence 58999999999999999999988532 223 222222111 111123456666663 223578999
Q ss_pred EEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecc
Q 010005 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (520)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~ 133 (520)
||-+++.. -+..++....+.|+ ++|=.|+.
T Consensus 65 v~~a~g~~---------------~s~~~a~~~~~~G~-~VID~ss~ 94 (339)
T TIGR01296 65 ALFSAGGS---------------VSKEFAPKAAKCGA-IVIDNTSA 94 (339)
T ss_pred EEECCCHH---------------HHHHHHHHHHHCCC-EEEECCHH
Confidence 99888632 22345566666786 56655554
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK08057 cobalt-precorrin-6x reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.04 Score=53.45 Aligned_cols=94 Identities=16% Similarity=0.161 Sum_probs=68.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--C
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~ 84 (520)
|+++|||.|||+= |+.+++.|.+.| +.|++. .-.+.. . ..........+-+.|.+.+.+.++ +
T Consensus 1 ~~~~IlvlgGT~e-gr~la~~L~~~g-~~v~~S--------vat~~g-~----~~~~~~~v~~G~l~~~~~l~~~l~~~~ 65 (248)
T PRK08057 1 MMPRILLLGGTSE-ARALARALAAAG-VDIVLS--------LAGRTG-G----PADLPGPVRVGGFGGAEGLAAYLREEG 65 (248)
T ss_pred CCceEEEEechHH-HHHHHHHHHhCC-CeEEEE--------EccCCC-C----cccCCceEEECCCCCHHHHHHHHHHCC
Confidence 3678999999975 999999999999 576652 111111 0 123467788899889999999996 6
Q ss_pred CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEE
Q 010005 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRL 127 (520)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~ 127 (520)
+++||+.. +++. .+-+.|+.++|++.|++-+
T Consensus 66 i~~VIDAT------HPfA------~~is~~a~~ac~~~~ipyi 96 (248)
T PRK08057 66 IDLVIDAT------HPYA------AQISANAAAACRALGIPYL 96 (248)
T ss_pred CCEEEECC------CccH------HHHHHHHHHHHHHhCCcEE
Confidence 99999775 3333 3456789999999998533
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.046 Score=52.55 Aligned_cols=115 Identities=15% Similarity=0.063 Sum_probs=74.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC-----CCC----------CCCCCCCCCcEEEE
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES-----NSL----------LPDSLSSGRAEYHQ 69 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~-----~~~----------l~~~~~~~~v~~~~ 69 (520)
+..+|+|.| .|-+|++++..|...|..+++++|.+. ..++.|+.- -+. +.+....-.++.+.
T Consensus 26 ~~~~VlIiG-~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~ 104 (231)
T PRK08328 26 KKAKVAVVG-VGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV 104 (231)
T ss_pred hCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe
Confidence 356899998 788999999999999977899988654 112333210 000 00111122344445
Q ss_pred ecCCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccccccc
Q 010005 70 VDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFD 138 (520)
Q Consensus 70 ~Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~ 138 (520)
..+ +.+.+.+.++++|+||.+... +. .-..+-++|++.++ .+|+.++.+.||.
T Consensus 105 ~~~-~~~~~~~~l~~~D~Vid~~d~------~~--------~r~~l~~~~~~~~i-p~i~g~~~g~~G~ 157 (231)
T PRK08328 105 GRL-SEENIDEVLKGVDVIVDCLDN------FE--------TRYLLDDYAHKKGI-PLVHGAVEGTYGQ 157 (231)
T ss_pred ccC-CHHHHHHHHhcCCEEEECCCC------HH--------HHHHHHHHHHHcCC-CEEEEeeccCEEE
Confidence 555 445577788999999987631 21 11235578889986 6899888888764
|
|
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0084 Score=55.43 Aligned_cols=74 Identities=19% Similarity=0.333 Sum_probs=44.3
Q ss_pred CCCeEEEEcC----------------CChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEe
Q 010005 7 IPRTCVVLNG----------------RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV 70 (520)
Q Consensus 7 ~~~~ILVtGa----------------tGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~ 70 (520)
++++||||+| ||-.|..|++.+..+| ++|+. +..... +. ...+++.+.+
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~G-a~V~l--------i~g~~~---~~---~p~~~~~i~v 66 (185)
T PF04127_consen 2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRG-AEVTL--------IHGPSS---LP---PPPGVKVIRV 66 (185)
T ss_dssp TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT--EEEE--------EE-TTS----------TTEEEEE-
T ss_pred CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCC-CEEEE--------EecCcc---cc---ccccceEEEe
Confidence 4678888876 7999999999999999 48888 333321 10 1235666654
Q ss_pred cCCC--HHHHHHHHcCCCEEEEcccCC
Q 010005 71 DVRD--ISQIKKVLEGASTVFYVDATD 95 (520)
Q Consensus 71 Dl~d--~~~l~~~l~~~D~Vih~aa~~ 95 (520)
.-.+ .+.+.+.+.++|++||+||..
T Consensus 67 ~sa~em~~~~~~~~~~~Di~I~aAAVs 93 (185)
T PF04127_consen 67 ESAEEMLEAVKELLPSADIIIMAAAVS 93 (185)
T ss_dssp SSHHHHHHHHHHHGGGGSEEEE-SB--
T ss_pred cchhhhhhhhccccCcceeEEEecchh
Confidence 4322 133445556789999999983
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.32 Score=43.20 Aligned_cols=183 Identities=16% Similarity=0.095 Sum_probs=96.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCC--H-------HHH
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD--I-------SQI 78 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d--~-------~~l 78 (520)
..||+|-||.|-+|+.+++.+.+++ |-|--+|...+ ++ ... -+.+|..+ . +++
T Consensus 3 agrVivYGGkGALGSacv~~Fkann-ywV~siDl~eN------e~----------Ad~-sI~V~~~~swtEQe~~v~~~v 64 (236)
T KOG4022|consen 3 AGRVIVYGGKGALGSACVEFFKANN-YWVLSIDLSEN------EQ----------ADS-SILVDGNKSWTEQEQSVLEQV 64 (236)
T ss_pred CceEEEEcCcchHhHHHHHHHHhcC-eEEEEEeeccc------cc----------ccc-eEEecCCcchhHHHHHHHHHH
Confidence 4799999999999999999999999 78888775432 11 011 12223222 1 233
Q ss_pred HHHHc--CCCEEEEcccC--CCCCc------chhhHHhhhHHHHHHHHHHHHHC-CCCEEEEeecccccccCCCCCCCCC
Q 010005 79 KKVLE--GASTVFYVDAT--DLNTD------DFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 79 ~~~l~--~~D~Vih~aa~--~~~~~------~~~~~~~~Nv~gt~~ll~aa~~~-gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
.+.+. ++|+||-.||- ..... +-+.+++..+-...--...+.++ +..-++-+..+.. .-
T Consensus 65 g~sL~gekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAka----------Al 134 (236)
T KOG4022|consen 65 GSSLQGEKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAKA----------AL 134 (236)
T ss_pred HHhhcccccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeeccccc----------cc
Confidence 34444 48999999887 22211 22333333332222222222222 1222332222211 11
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC-CCce----EEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI-DGLL----TCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-~gi~----~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
+ +....-.||..|++..++.+.++.+ .|+| ...+-|-..--|..+..+| + -..-
T Consensus 135 ~----gTPgMIGYGMAKaAVHqLt~SLaak~SGlP~gsaa~~ilPVTLDTPMNRKwMP----------------~-ADfs 193 (236)
T KOG4022|consen 135 G----GTPGMIGYGMAKAAVHQLTSSLAAKDSGLPDGSAALTILPVTLDTPMNRKWMP----------------N-ADFS 193 (236)
T ss_pred C----CCCcccchhHHHHHHHHHHHHhcccccCCCCCceeEEEeeeeccCccccccCC----------------C-Cccc
Confidence 1 1123457999999999999998654 4654 2233333333333222111 1 2234
Q ss_pred ccccHHHHHHHHHHHHH
Q 010005 223 DFTYVENVAHAHVCAAE 239 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~ 239 (520)
+|+...-+++-+..-.+
T Consensus 194 sWTPL~fi~e~flkWtt 210 (236)
T KOG4022|consen 194 SWTPLSFISEHFLKWTT 210 (236)
T ss_pred CcccHHHHHHHHHHHhc
Confidence 66777777777665544
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0065 Score=64.59 Aligned_cols=73 Identities=18% Similarity=0.128 Sum_probs=54.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHH-HcCCCE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAST 87 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~-l~~~D~ 87 (520)
|+|+|.|+ |.+|+++++.|.+.| ++|+++|.. +.. ........+++.+.+|..+.+.+.++ ++++|+
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g-~~v~vid~~--------~~~--~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~ 68 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGEN-NDVTVIDTD--------EER--LRRLQDRLDVRTVVGNGSSPDVLREAGAEDADL 68 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CcEEEEECC--------HHH--HHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCE
Confidence 58999986 999999999999999 488885543 221 11111113678999999999988888 888999
Q ss_pred EEEccc
Q 010005 88 VFYVDA 93 (520)
Q Consensus 88 Vih~aa 93 (520)
||-+..
T Consensus 69 vi~~~~ 74 (453)
T PRK09496 69 LIAVTD 74 (453)
T ss_pred EEEecC
Confidence 986653
|
|
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.041 Score=53.07 Aligned_cols=116 Identities=17% Similarity=0.105 Sum_probs=78.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcC-CcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELG-KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g-~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
.+-||.|.||+|-||+.|...|.... ..++..+|+....-+.- .+ .+-+.........-+++++++++++
T Consensus 27 ~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaa-----Dl----SHI~T~s~V~g~~g~~~L~~al~~a 97 (345)
T KOG1494|consen 27 RGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAA-----DL----SHINTNSSVVGFTGADGLENALKGA 97 (345)
T ss_pred CcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccc-----cc----cccCCCCceeccCChhHHHHHhcCC
Confidence 45799999999999999987766543 13467777653211110 11 1112222233344456899999999
Q ss_pred CEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEee
Q 010005 86 STVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (520)
Q Consensus 86 D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~S 131 (520)
|+|+--||. .-.....+..+++|.--.+.|.+++.++-.+ ++.++|
T Consensus 98 dvVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIs 145 (345)
T KOG1494|consen 98 DVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVIS 145 (345)
T ss_pred CEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeec
Confidence 999999998 4445667889999999999999999888543 444444
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.043 Score=55.21 Aligned_cols=109 Identities=15% Similarity=0.123 Sum_probs=70.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCC-CCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~~-~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
|+|.|.|+ |.+|+.++..|..+|. .+|.++|+.... .+... ..+.... .........+ |. +.++++|
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~--~~g~a-~dl~~~~~~~~~~~i~~~---d~----~~l~~aD 69 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAK--AEGEA-MDLAHGTPFVKPVRIYAG---DY----ADCKGAD 69 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchh--hhhHH-HHHHccccccCCeEEeeC---CH----HHhCCCC
Confidence 58999996 9999999999999984 479998875421 11100 0011000 0011222222 22 3478999
Q ss_pred EEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEE
Q 010005 87 TVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (520)
Q Consensus 87 ~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V 128 (520)
+||-+++. .....+.......|+.-.+.+.+..++.+-+-++
T Consensus 70 iViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~gii 112 (308)
T cd05292 70 VVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAIL 112 (308)
T ss_pred EEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEE
Confidence 99999997 3334567778899999999999999888643333
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.052 Score=55.75 Aligned_cols=114 Identities=13% Similarity=0.080 Sum_probs=73.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--C------------CCCCCCCCCCCcEEEEe
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--N------------SLLPDSLSSGRAEYHQV 70 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~--~------------~~l~~~~~~~~v~~~~~ 70 (520)
+..+|+|.| .|-+|+++++.|...|..+++++|.+. ..++.|..- . ..+.+....-.++.+..
T Consensus 27 ~~~~VlivG-~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~ 105 (355)
T PRK05597 27 FDAKVAVIG-AGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR 105 (355)
T ss_pred hCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence 457999998 588999999999999977899988765 112333210 0 00011111123444555
Q ss_pred cCCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccc
Q 010005 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (520)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg 137 (520)
.+. .+...+.++++|+||.+.. ++ ..-..+-++|.+.++ .+|+.++.+.+|
T Consensus 106 ~i~-~~~~~~~~~~~DvVvd~~d------~~--------~~r~~~n~~c~~~~i-p~v~~~~~g~~g 156 (355)
T PRK05597 106 RLT-WSNALDELRDADVILDGSD------NF--------DTRHLASWAAARLGI-PHVWASILGFDA 156 (355)
T ss_pred ecC-HHHHHHHHhCCCEEEECCC------CH--------HHHHHHHHHHHHcCC-CEEEEEEecCeE
Confidence 554 4556778899999998863 22 122236678999987 699988776664
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.024 Score=56.73 Aligned_cols=84 Identities=15% Similarity=0.177 Sum_probs=53.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
|+++|.|.||||++|..|++.|.++...++.. +..+... |+.+ ..+.++++|
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~--------~~s~~~~-----------------~~~~---~~~~~~~~D 52 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLS--------IPEAKRK-----------------DAAA---RRELLNAAD 52 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEE--------EecCCCC-----------------cccC---chhhhcCCC
Confidence 36799999999999999999999887444554 2222211 1111 134556899
Q ss_pred EEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccc
Q 010005 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (520)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~ 134 (520)
+||-+... ..+..+...+.+.|+ ++|=.|+..
T Consensus 53 vvFlalp~---------------~~s~~~~~~~~~~g~-~VIDlSadf 84 (313)
T PRK11863 53 VAILCLPD---------------DAAREAVALIDNPAT-RVIDASTAH 84 (313)
T ss_pred EEEECCCH---------------HHHHHHHHHHHhCCC-EEEECChhh
Confidence 99876642 122345556666776 677777654
|
|
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.053 Score=56.90 Aligned_cols=182 Identities=11% Similarity=0.022 Sum_probs=102.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhc---CCc---EEEEecCCcccccCCCCCCCCCCC---CCCCCCcEEEEecCCCHHHH
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLEL---GKC---IVRVTDSTQSLQLDPSESNSLLPD---SLSSGRAEYHQVDVRDISQI 78 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~---g~~---~V~~~D~~~~~~l~r~~~~~~l~~---~~~~~~v~~~~~Dl~d~~~l 78 (520)
.-+|+||||+|.||.+|+..+..- |.. .++.+|+........... -.+.+ .+. .++... .| +
T Consensus 123 p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~a-mDL~D~a~pll-~~v~i~-~~--~---- 193 (452)
T cd05295 123 PLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLV-MEVEDLAFPLL-RGISVT-TD--L---- 193 (452)
T ss_pred ceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHH-HHHHHhHHhhc-CCcEEE-EC--C----
Confidence 468999999999999999998872 422 366766521100100000 00000 000 122222 21 1
Q ss_pred HHHHcCCCEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCC--CEEEEeecccccccCCCCCCCCCCCccCCCC
Q 010005 79 KKVLEGASTVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKV--RRLVYNSTADVVFDGSHDIHNGDETLTCCWK 155 (520)
Q Consensus 79 ~~~l~~~D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gv--kr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~ 155 (520)
.+.++++|+||-+||. .....+.....+.|+.-.+.+.++..++.- .+++.+.|.-+= ....-.-..+| ...
T Consensus 194 ~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD----~~t~i~~k~ap-giP 268 (452)
T cd05295 194 DVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLN----LKTSILIKYAP-SIP 268 (452)
T ss_pred HHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHH----HHHHHHHHHcC-CCC
Confidence 4678899999999998 334467888999999999999999998875 566666543220 00000000110 111
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHH
Q 010005 156 FQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLV 203 (520)
Q Consensus 156 p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~ 203 (520)
+....|.+....-++....+++.|+++..++-..|+|......++.+-
T Consensus 269 ~~rVig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~sqvpd~S 316 (452)
T cd05295 269 RKNIIAVARLQENRAKALLARKLNVNSAGIKDVIVWGNIGGNTYIDLS 316 (452)
T ss_pred HHHEEEecchHHHHHHHHHHHHhCcCHHHceeeEEEEccCCceeeeee
Confidence 222233333333344444555678888888777888865544444443
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.017 Score=58.13 Aligned_cols=115 Identities=11% Similarity=0.061 Sum_probs=71.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCC--CCCcEEEEecCCCHHHHHHHHcCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS--SGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~--~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
||||.|+|+ |.+|+.++..+...|..+|+++|+.... .+.... .+.+... ...... ... .| . +.++++
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~--~~~~~~-dl~~~~~~~~~~~~i-~~~-~d---~-~~~~~a 71 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGV--PQGKAL-DIAEAAPVEGFDTKI-TGT-ND---Y-EDIAGS 71 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCch--hHHHHH-HHHhhhhhcCCCcEE-EeC-CC---H-HHHCCC
Confidence 479999998 9999999999998873389998885431 111000 0101000 001111 111 12 2 347899
Q ss_pred CEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEeec
Q 010005 86 STVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (520)
Q Consensus 86 D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~SS 132 (520)
|+||-+++. .....+..+....|+.-.+.+++...+...+ .+|..|.
T Consensus 72 DiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tN 120 (307)
T PRK06223 72 DVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTN 120 (307)
T ss_pred CEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999999887 2233455667788999999999988887643 3555553
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.034 Score=52.68 Aligned_cols=114 Identities=14% Similarity=0.089 Sum_probs=72.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCCC-------------CCCCCCCCCCCcEEEEec
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSESN-------------SLLPDSLSSGRAEYHQVD 71 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~~-------------~~l~~~~~~~~v~~~~~D 71 (520)
+..+|+|.| .|-+|+++++.|...|..+++++|.+. ..++.|..-. ..+.+....-+++.+...
T Consensus 27 ~~~~V~ViG-~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~ 105 (212)
T PRK08644 27 KKAKVGIAG-AGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEK 105 (212)
T ss_pred hCCCEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeee
Confidence 357899998 799999999999999977799998873 2224443110 000011111234445555
Q ss_pred CCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHC-CCCEEEEeecccccc
Q 010005 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVF 137 (520)
Q Consensus 72 l~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-gvkr~V~~SS~~vyg 137 (520)
+.+ +.+.+.++++|+||.+.. ++ ..-..+.+.|.+. ++ .+|+.+...-|+
T Consensus 106 i~~-~~~~~~~~~~DvVI~a~D------~~--------~~r~~l~~~~~~~~~~-p~I~~~~~~~~~ 156 (212)
T PRK08644 106 IDE-DNIEELFKDCDIVVEAFD------NA--------ETKAMLVETVLEHPGK-KLVAASGMAGYG 156 (212)
T ss_pred cCH-HHHHHHHcCCCEEEECCC------CH--------HHHHHHHHHHHHhCCC-CEEEeehhhccC
Confidence 543 456778899999998742 22 2224566788887 75 688886555443
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.039 Score=56.43 Aligned_cols=95 Identities=17% Similarity=0.184 Sum_probs=55.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcE---EEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCI---VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~---V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
++|.|.||||++|+.+++.|++..+.. ++.+... ++.. ... .+. +......++.|.+. ++++
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~------~sg~--~~~-~f~--g~~~~v~~~~~~~~----~~~~ 66 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTS------QAGG--AAP-SFG--GKEGTLQDAFDIDA----LKKL 66 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecch------hhCC--ccc-ccC--CCcceEEecCChhH----hcCC
Confidence 789999999999999999777665455 5552221 1111 111 111 11223344444433 4679
Q ss_pred CEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEeecc
Q 010005 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTA 133 (520)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~SS~ 133 (520)
|+||.+++. ..+..+...+.+.|++ .+|=.||.
T Consensus 67 Divf~a~~~---------------~~s~~~~~~~~~aG~~~~VID~Ss~ 100 (369)
T PRK06598 67 DIIITCQGG---------------DYTNEVYPKLRAAGWQGYWIDAAST 100 (369)
T ss_pred CEEEECCCH---------------HHHHHHHHHHHhCCCCeEEEECChH
Confidence 999988763 1235567777778863 35544544
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0085 Score=60.34 Aligned_cols=34 Identities=21% Similarity=0.421 Sum_probs=29.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~ 43 (520)
+|+|.|+| +|.+|+.++..|.++| ++|+++|+..
T Consensus 2 ~~~V~VIG-~G~mG~~iA~~la~~G-~~V~v~d~~~ 35 (308)
T PRK06129 2 MGSVAIIG-AGLIGRAWAIVFARAG-HEVRLWDADP 35 (308)
T ss_pred CcEEEEEC-ccHHHHHHHHHHHHCC-CeeEEEeCCH
Confidence 36899999 9999999999999999 5999977653
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.029 Score=55.32 Aligned_cols=115 Identities=15% Similarity=0.102 Sum_probs=72.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--CCCC------------CCCCCCCCcEEEEe
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--NSLL------------PDSLSSGRAEYHQV 70 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~--~~~l------------~~~~~~~~v~~~~~ 70 (520)
+..+|+|.| .|-+|++++..|...|..+++++|.+. ..++.|+-- .... .+....-+++.+..
T Consensus 26 ~~s~VlIvG-~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~ 104 (287)
T PRK08223 26 RNSRVAIAG-LGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPE 104 (287)
T ss_pred hcCCEEEEC-CCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 357899998 788999999999999987899998864 223444321 0000 01111123444555
Q ss_pred cCCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccccc
Q 010005 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (520)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vy 136 (520)
.+. .+...++++++|+||.+.- ++ ++..-..+-++|++.++ .+|+.|.....
T Consensus 105 ~l~-~~n~~~ll~~~DlVvD~~D------~~------~~~~r~~ln~~c~~~~i-P~V~~~~~g~~ 156 (287)
T PRK08223 105 GIG-KENADAFLDGVDVYVDGLD------FF------EFDARRLVFAACQQRGI-PALTAAPLGMG 156 (287)
T ss_pred ccC-ccCHHHHHhCCCEEEECCC------CC------cHHHHHHHHHHHHHcCC-CEEEEeccCCe
Confidence 554 4456788899999995542 11 11223457789999996 68887655543
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.016 Score=58.36 Aligned_cols=112 Identities=17% Similarity=0.173 Sum_probs=73.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
+||.|.|+ |.+|+.++..|+..|. ++|+++|+.... .... ...+.+.. ......... .+. +.++++
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~--~~~~-a~dL~~~~~~~~~~~~i~~---~~~----~~l~~a 69 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEK--AEGE-ALDLEDALAFLPSPVKIKA---GDY----SDCKDA 69 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcch--hhHh-HhhHHHHhhccCCCeEEEc---CCH----HHhCCC
Confidence 47999995 9999999999999984 279997765421 0000 00111100 011122221 222 236899
Q ss_pred CEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEee
Q 010005 86 STVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (520)
Q Consensus 86 D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~S 131 (520)
|+||.+++. .....+.....+.|..-.+.+.+..++++-+ .++.+|
T Consensus 70 DIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 70 DIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred CEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 999999998 3344577889999999999999999998743 455555
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.021 Score=57.31 Aligned_cols=116 Identities=14% Similarity=0.111 Sum_probs=71.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCEE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~V 88 (520)
|||.|.|+ |++|..++..|...|+.+|+++|+... +.+.... .+.+....... .+.+.-..++.+ ++++|+|
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~--l~~g~a~-d~~~~~~~~~~---~~~i~~t~d~~~-~~~aDiV 73 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEG--IPQGKAL-DMYEASPVGGF---DTKVTGTNNYAD-TANSDIV 73 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCC--hhHHHHH-hhhhhhhccCC---CcEEEecCCHHH-hCCCCEE
Confidence 68999995 999999999999988547999988442 1111100 00000000000 011111111233 6789999
Q ss_pred EEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEeec
Q 010005 89 FYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (520)
Q Consensus 89 ih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~SS 132 (520)
|-+++.+ ....+.......|..-...+++...+++-+ .+|.+|.
T Consensus 74 Iitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN 119 (305)
T TIGR01763 74 VITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN 119 (305)
T ss_pred EEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9999973 223456678889999999999998887632 4555553
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.037 Score=57.05 Aligned_cols=117 Identities=15% Similarity=0.042 Sum_probs=73.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCc------EEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEEecCCCHHHHH
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKC------IVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIK 79 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~------~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~~Dl~d~~~l~ 79 (520)
.-||.|+|++|.+|++++..|...|.. .++.+|++.+......... .+.+.. ...++... . .| .
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~-DL~d~a~~~~~~v~i~-~--~~----y 115 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAM-ELEDSLYPLLREVSIG-I--DP----Y 115 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHH-HHHHhhhhhcCceEEe-c--CC----H
Confidence 469999999999999999999988643 2445433211001111000 011100 00122111 1 12 4
Q ss_pred HHHcCCCEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCC--CCEEEEeec
Q 010005 80 KVLEGASTVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNST 132 (520)
Q Consensus 80 ~~l~~~D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g--vkr~V~~SS 132 (520)
+.++++|+||-.||. .....+.......|+.-.+.+.+...++. -.++|.+|.
T Consensus 116 ~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN 171 (387)
T TIGR01757 116 EVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN 171 (387)
T ss_pred HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 567899999999998 33446788899999999999999999953 235666664
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.037 Score=56.56 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=26.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEe
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~ 39 (520)
+||.|+|++|++|+++++.|.+.+..+|..+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v 31 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKV 31 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEE
Confidence 5899999999999999999988764466664
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.08 Score=54.08 Aligned_cols=113 Identities=14% Similarity=0.093 Sum_probs=73.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCC-CCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLS-SGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~~~-~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
+||.|+|+ |.||++++..|+..+. .++..+|+.... ..... -.+..... ..... +.++ .|. +.++++|
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~--~~g~a-~DL~~~~~~~~~~~-i~~~-~dy----~~~~daD 107 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDK--LRGEM-LDLQHAAAFLPRTK-ILAS-TDY----AVTAGSD 107 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCch--hhHHH-HHHHhhhhcCCCCE-EEeC-CCH----HHhCCCC
Confidence 69999995 9999999999988774 369998875421 11100 01111100 01122 2221 122 2378999
Q ss_pred EEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEee
Q 010005 87 TVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (520)
Q Consensus 87 ~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~S 131 (520)
+||-+||. .....+.......|+.-.+.+.+..++++.+ .+|.+|
T Consensus 108 iVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 108 LCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 99999998 3334567888999999999999999998743 455555
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.043 Score=57.16 Aligned_cols=114 Identities=13% Similarity=0.060 Sum_probs=74.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--CCCC------------CCCCCCCCcEEEEe
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--NSLL------------PDSLSSGRAEYHQV 70 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~--~~~l------------~~~~~~~~v~~~~~ 70 (520)
+..+|+|.| .|-+|++++..|...|..+++++|.+. ..++.|+.- .... .+....-+++.+..
T Consensus 41 ~~~~VlviG-~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 119 (392)
T PRK07878 41 KNARVLVIG-AGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEF 119 (392)
T ss_pred hcCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEec
Confidence 357899998 788999999999999977899988764 112333211 0000 01011123444555
Q ss_pred cCCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccc
Q 010005 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (520)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg 137 (520)
++. .+...++++++|+||.+.. ++ ..-..+-++|++.++ .||+.+....+|
T Consensus 120 ~i~-~~~~~~~~~~~D~Vvd~~d------~~--------~~r~~ln~~~~~~~~-p~v~~~~~g~~G 170 (392)
T PRK07878 120 RLD-PSNAVELFSQYDLILDGTD------NF--------ATRYLVNDAAVLAGK-PYVWGSIYRFEG 170 (392)
T ss_pred cCC-hhHHHHHHhcCCEEEECCC------CH--------HHHHHHHHHHHHcCC-CEEEEEeccCEE
Confidence 554 3456778899999997752 22 222336688999986 699998888776
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.036 Score=57.42 Aligned_cols=114 Identities=17% Similarity=0.148 Sum_probs=71.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCCC--------------CCCCCCCCCCCcEEEEe
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSESN--------------SLLPDSLSSGRAEYHQV 70 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~~--------------~~l~~~~~~~~v~~~~~ 70 (520)
+..+|+|.| .|-+|++++..|...|..+++++|.+. ..++.|..-- ..+.+....-.++.+..
T Consensus 134 ~~~~VlvvG-~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~ 212 (376)
T PRK08762 134 LEARVLLIG-AGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE 212 (376)
T ss_pred hcCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 457899997 678999999999999977899988863 1123332110 00000011112334444
Q ss_pred cCCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccc
Q 010005 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (520)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg 137 (520)
.+. .+.+.++++++|+||++.. ++. .-..+-++|++.++ .+|+.+....+|
T Consensus 213 ~~~-~~~~~~~~~~~D~Vv~~~d------~~~--------~r~~ln~~~~~~~i-p~i~~~~~g~~g 263 (376)
T PRK08762 213 RVT-SDNVEALLQDVDVVVDGAD------NFP--------TRYLLNDACVKLGK-PLVYGAVFRFEG 263 (376)
T ss_pred cCC-hHHHHHHHhCCCEEEECCC------CHH--------HHHHHHHHHHHcCC-CEEEEEeccCEE
Confidence 443 4567778899999998863 221 11236688999997 688887665554
|
|
| >KOG1496 consensus Malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.042 Score=51.73 Aligned_cols=172 Identities=12% Similarity=0.055 Sum_probs=93.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhc---CCcE---EEEecCCcccccCCCCCCCCCCC---CCCCCCcEE-EEecCCCHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLEL---GKCI---VRVTDSTQSLQLDPSESNSLLPD---SLSSGRAEY-HQVDVRDIS 76 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~---g~~~---V~~~D~~~~~~l~r~~~~~~l~~---~~~~~~v~~-~~~Dl~d~~ 76 (520)
+.-||+||||+|.||.+|+..+.+- |.++ +..+|+.+ ..+ .+.. ++...-... ..++..+.+
T Consensus 3 epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~------~~~--~LegV~mELqD~a~PlL~~Vvattd~ 74 (332)
T KOG1496|consen 3 EPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPP------MMS--VLEGVKMELQDCALPLLKGVVATTDE 74 (332)
T ss_pred CceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCch------HHH--HHHHHHHHHHhhhhhHHHhhhcccCh
Confidence 3579999999999999999987652 2111 33333321 100 0000 000000111 112222222
Q ss_pred HHHHHHcCCCEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHC---CCCEEEEeecccccccCCCCCC-CCCCCcc
Q 010005 77 QIKKVLEGASTVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIH-NGDETLT 151 (520)
Q Consensus 77 ~l~~~l~~~D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~---gvkr~V~~SS~~vyg~~~~~~~-~~~E~~~ 151 (520)
.++++++|+.|-.++. .............|+.-.+.--.|..++ .+| ++..... ..+.. -..+..|
T Consensus 75 --~~afkdv~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~K-VlVVgNP------aNTNali~~k~Ap 145 (332)
T KOG1496|consen 75 --VEAFKDVDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVK-VLVVGNP------ANTNALILKKFAP 145 (332)
T ss_pred --hhhhccCcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCce-EEEecCc------cccchhHHhhhCC
Confidence 5678899999999988 3444556778888887766655555544 354 3333322 11111 1123332
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC
Q 010005 152 CCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT 196 (520)
Q Consensus 152 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~ 196 (520)
.....+.-+.++..-.+...+.+.+.|.++.-+..-.|+|....
T Consensus 146 -sIP~kNfs~lTRLDhNRA~~QlA~klgv~~~~VkNviIWGNHSs 189 (332)
T KOG1496|consen 146 -SIPEKNFSALTRLDHNRALAQLALKLGVPVSDVKNVIIWGNHSS 189 (332)
T ss_pred -CCchhcchhhhhhchhhHHHHHHHhhCCchhhcceeEEeccccc
Confidence 11223444556666666677777777888877777777886543
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.077 Score=53.09 Aligned_cols=114 Identities=17% Similarity=0.125 Sum_probs=65.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcE---EEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCI---VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~---V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
+++|.|.||||.+|+.+++.|.++. .. +..+- -.|+..+. ..+ .....+. +.-|..|. ..+++
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~-f~~~~~~~~A------S~rSaG~~-~~~-f~~~~~~-v~~~~~~~----~~~~~ 66 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERH-FPFEELVLLA------SARSAGKK-YIE-FGGKSIG-VPEDAADE----FVFSD 66 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcC-CCcceEEEEe------cccccCCc-ccc-ccCcccc-Cccccccc----ccccc
Confidence 4789999999999999999999973 32 33311 23332211 000 0111111 11111222 22338
Q ss_pred CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHH
Q 010005 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (520)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~ 161 (520)
+|.||.+++.+. ++.+...+.++|+ +.++.++.| ..+++.|....+.++..
T Consensus 67 ~Divf~~ag~~~---------------s~~~~p~~~~~G~---~VIdnsSa~--------Rm~~DVPLVVPeVN~~~ 117 (334)
T COG0136 67 VDIVFFAAGGSV---------------SKEVEPKAAEAGC---VVIDNSSAF--------RMDPDVPLVVPEVNPEH 117 (334)
T ss_pred CCEEEEeCchHH---------------HHHHHHHHHHcCC---EEEeCCccc--------ccCCCCCEecCCcCHHH
Confidence 999999997422 2457778888984 455555555 44556665556666644
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.075 Score=53.49 Aligned_cols=114 Identities=14% Similarity=0.089 Sum_probs=73.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCC-CCCcEEEEecCCCHHHHHHHHcCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLS-SGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~~~-~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
.+||.|+|+ |.||+.++..|...|. .+++.+|+... ...... ..+..... ......... .|. + .++++
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~--~~~g~a-~Dl~~~~~~~~~~~v~~~--~dy---~-~~~~a 72 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVED--KLKGEA-MDLQHGSAFLKNPKIEAD--KDY---S-VTANS 72 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcc--HHHHHH-HHHHHhhccCCCCEEEEC--CCH---H-HhCCC
Confidence 469999995 9999999999988764 46999887542 111110 01111100 011122221 122 2 37899
Q ss_pred CEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEee
Q 010005 86 STVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (520)
Q Consensus 86 D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~S 131 (520)
|+||-+||. .....+.......|..-.+.+.+..++++-+ .++.+|
T Consensus 73 divvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs 120 (312)
T cd05293 73 KVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS 120 (312)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc
Confidence 999999987 3334567888999999999999999998743 455555
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.052 Score=49.74 Aligned_cols=111 Identities=10% Similarity=0.036 Sum_probs=68.1
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCCC-------------CCCCCCCCCCCcEEEEecCCC
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSESN-------------SLLPDSLSSGRAEYHQVDVRD 74 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~~-------------~~l~~~~~~~~v~~~~~Dl~d 74 (520)
+|+|.| .|-+|+++++.|...|..+++++|.+. ..++.|.... ..+.+....-+++.+...+.
T Consensus 1 ~VlViG-~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~- 78 (174)
T cd01487 1 KVGIAG-AGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKID- 78 (174)
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecC-
Confidence 588998 699999999999999976799999875 1123333210 00001111223444555553
Q ss_pred HHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHC-CCCEEEEeecccccc
Q 010005 75 ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVF 137 (520)
Q Consensus 75 ~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-gvkr~V~~SS~~vyg 137 (520)
.+.+.+.++++|+||.+.. ++ ..-..+.+.|.+. ++ .+|+.+...-||
T Consensus 79 ~~~~~~~l~~~DlVi~~~d------~~--------~~r~~i~~~~~~~~~i-p~i~~~~~~~~~ 127 (174)
T cd01487 79 ENNLEGLFGDCDIVVEAFD------NA--------ETKAMLAESLLGNKNK-PVVCASGMAGFG 127 (174)
T ss_pred hhhHHHHhcCCCEEEECCC------CH--------HHHHHHHHHHHHHCCC-CEEEEehhhccC
Confidence 3557788999999998742 12 1123466676666 65 678776554443
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.096 Score=52.52 Aligned_cols=113 Identities=14% Similarity=0.147 Sum_probs=73.6
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCC-----CCC---------CCCCCCCCCCcEEEEecCC
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSE-----SNS---------LLPDSLSSGRAEYHQVDVR 73 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~-----~~~---------~l~~~~~~~~v~~~~~Dl~ 73 (520)
||||.| .|-+|.++++.|...|..+++++|.+. ..++.|+- +-+ .+.+....-.++.+..++.
T Consensus 1 kVlIVG-aGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~ 79 (312)
T cd01489 1 KVLVVG-AGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312)
T ss_pred CEEEEC-CCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 589998 599999999999999977899988765 11233321 000 0001111224556677777
Q ss_pred CHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccccccc
Q 010005 74 DISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFD 138 (520)
Q Consensus 74 d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~ 138 (520)
+.....+.++++|+||.+.. + ...-..+-+.|++.++ .||..++.+.+|.
T Consensus 80 ~~~~~~~f~~~~DvVv~a~D------n--------~~ar~~in~~c~~~~i-p~I~~gt~G~~G~ 129 (312)
T cd01489 80 DPDFNVEFFKQFDLVFNALD------N--------LAARRHVNKMCLAADV-PLIESGTTGFLGQ 129 (312)
T ss_pred CccchHHHHhcCCEEEECCC------C--------HHHHHHHHHHHHHCCC-CEEEEecCcceeE
Confidence 64444577889999997642 1 2333456788888886 6898888877653
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.035 Score=58.22 Aligned_cols=188 Identities=12% Similarity=0.010 Sum_probs=102.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhc-------CC-cEEEEecCCcccccCCCCCCCCCCCCC-C-CCCcEEEEecCCCHHH
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLEL-------GK-CIVRVTDSTQSLQLDPSESNSLLPDSL-S-SGRAEYHQVDVRDISQ 77 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~-------g~-~~V~~~D~~~~~~l~r~~~~~~l~~~~-~-~~~v~~~~~Dl~d~~~ 77 (520)
.-||.|+|++|.||++++..|... |. .++..+|+.... ..... -.+.+.. . ..++.+. . .|
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~--a~G~a-mDL~daa~~~~~~v~i~-~--~~--- 170 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQA--LEGVA-MELEDSLYPLLREVSIG-I--DP--- 170 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcch--hHHHH-HHHHHhhhhhcCceEEe-c--CC---
Confidence 468999999999999999999987 42 257776654321 11000 0111100 0 0112111 1 12
Q ss_pred HHHHHcCCCEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHH-CCC-CEEEEeecccccccCCCCCCCCCCCccCCC
Q 010005 78 IKKVLEGASTVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRE-CKV-RRLVYNSTADVVFDGSHDIHNGDETLTCCW 154 (520)
Q Consensus 78 l~~~l~~~D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~-~gv-kr~V~~SS~~vyg~~~~~~~~~~E~~~~~~ 154 (520)
.+.++++|+||-.||. .....+.....+.|+.-.+.+.+...+ ++- ..+|.+|...=.- ..-.-+..+.+.
T Consensus 171 -ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~-----t~v~~k~sg~~~ 244 (444)
T PLN00112 171 -YEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTN-----ALICLKNAPNIP 244 (444)
T ss_pred -HHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHH-----HHHHHHHcCCCC
Confidence 3567899999999998 344467889999999999999999999 553 3566666432000 000001111111
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCc
Q 010005 155 KFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT 211 (520)
Q Consensus 155 ~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~ 211 (520)
....=..+....-++-...+++.|++...++-..|+|......++.+-..-..|.+
T Consensus 245 -~rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGdsqvp~wS~a~V~G~p 300 (444)
T PLN00112 245 -AKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKINGLP 300 (444)
T ss_pred -cceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCCceeeccceeEECCcc
Confidence 01111111222222223334446777777777778886554555544443334443
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.063 Score=59.84 Aligned_cols=108 Identities=13% Similarity=0.064 Sum_probs=71.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCc--ccccCCCCC-CCC------------CCCCCCCCCcEEEEe
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQ--SLQLDPSES-NSL------------LPDSLSSGRAEYHQV 70 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~--~~~l~r~~~-~~~------------l~~~~~~~~v~~~~~ 70 (520)
+..+|+|.|. | +|++++..|...|. -+++++|.+. -.++.|... ... +.+....-+++.+..
T Consensus 106 ~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~ 183 (722)
T PRK07877 106 GRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTD 183 (722)
T ss_pred hcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEec
Confidence 3579999998 8 99999999999994 6899988765 223444210 000 001111234556666
Q ss_pred cCCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeec
Q 010005 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (520)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS 132 (520)
.+. .+.+.++++++|+||.+.- ++ ..=..+-++|.+.|+ .+|+.++
T Consensus 184 ~i~-~~n~~~~l~~~DlVvD~~D------~~--------~~R~~ln~~a~~~~i-P~i~~~~ 229 (722)
T PRK07877 184 GLT-EDNVDAFLDGLDVVVEECD------SL--------DVKVLLREAARARRI-PVLMATS 229 (722)
T ss_pred cCC-HHHHHHHhcCCCEEEECCC------CH--------HHHHHHHHHHHHcCC-CEEEEcC
Confidence 664 6778999999999998862 22 222346688999987 5777775
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.15 Score=52.64 Aligned_cols=114 Identities=15% Similarity=0.111 Sum_probs=74.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--CC------------CCCCCCCCCCcEEEEe
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--NS------------LLPDSLSSGRAEYHQV 70 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~--~~------------~l~~~~~~~~v~~~~~ 70 (520)
+..+|+|.| .|-+|++++..|...|..+++++|.+. ..++.|+.- .. .+.+....-+++.+..
T Consensus 40 ~~~~VliiG-~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 118 (370)
T PRK05600 40 HNARVLVIG-AGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE 118 (370)
T ss_pred cCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence 357899998 788999999999999977899988864 223444310 00 0001111223455555
Q ss_pred cCCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccc
Q 010005 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (520)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg 137 (520)
.+. .+...++++++|+||.+.. ++ ..-..+-++|.+.++ .+|+.+...-+|
T Consensus 119 ~i~-~~~~~~~~~~~DlVid~~D------n~--------~~r~~in~~~~~~~i-P~v~~~~~g~~G 169 (370)
T PRK05600 119 RLT-AENAVELLNGVDLVLDGSD------SF--------ATKFLVADAAEITGT-PLVWGTVLRFHG 169 (370)
T ss_pred ecC-HHHHHHHHhCCCEEEECCC------CH--------HHHHHHHHHHHHcCC-CEEEEEEecCEE
Confidence 564 4567788999999998763 22 222345678888887 588888766554
|
|
| >cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.1 Score=54.66 Aligned_cols=115 Identities=11% Similarity=0.104 Sum_probs=70.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCC-----CCC---------CCCCCCCCCCCcEEEEec
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPS-----ESN---------SLLPDSLSSGRAEYHQVD 71 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~-----~~~---------~~l~~~~~~~~v~~~~~D 71 (520)
..+|+|.|++| +|+.+++.|...|...++++|.+. ..++.|. ..- ..+.+....-.++.+..+
T Consensus 20 ~s~VlliG~gg-lGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~V~i~~~~e~ 98 (425)
T cd01493 20 SAHVCLLNATA-TGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVEES 98 (425)
T ss_pred hCeEEEEcCcH-HHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 46899998655 999999999999977899988763 1112221 000 001111111233445544
Q ss_pred CCCH-HHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccccccc
Q 010005 72 VRDI-SQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFD 138 (520)
Q Consensus 72 l~d~-~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~ 138 (520)
+.+. +...+.+.++|+||-+.. + ......+.+.|++.++ .+|+++|.+.||.
T Consensus 99 ~~~ll~~~~~f~~~fdiVI~t~~------~--------~~~~~~L~~~c~~~~i-PlI~~~s~G~~G~ 151 (425)
T cd01493 99 PEALLDNDPSFFSQFTVVIATNL------P--------ESTLLRLADVLWSANI-PLLYVRSYGLYGY 151 (425)
T ss_pred cchhhhhHHHHhcCCCEEEECCC------C--------HHHHHHHHHHHHHcCC-CEEEEecccCEEE
Confidence 4331 122466788899984321 1 1222447788999987 6999999999984
|
APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. |
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.29 Score=52.32 Aligned_cols=166 Identities=15% Similarity=0.128 Sum_probs=95.7
Q ss_pred CCeEEEEcCC-ChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC--CCCCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 8 PRTCVVLNGR-GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES--NSLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 8 ~~~ILVtGat-GfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~--~~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
++-.|||||+ |.||..+++.|++-|. +|++.... +.+... ...+.... .....-.+..+.....+++.++
T Consensus 396 d~valVTGA~~gSIaa~Vv~~LL~gGA-tVI~TTS~----~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlI 470 (866)
T COG4982 396 DKVALVTGASKGSIAAAVVARLLAGGA-TVIATTSR----LSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALI 470 (866)
T ss_pred cceEEEecCCCcchHHHHHHHHHhCCc-EEEEEccc----ccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHH
Confidence 4678999976 7999999999999994 88874432 111110 00011111 1123455667776665555555
Q ss_pred c---------------------CCCEEEEcccCC----CCCcch--hhHHhhhHHHHHHHHHHHHHCCCCE-------EE
Q 010005 83 E---------------------GASTVFYVDATD----LNTDDF--YNCYMIIVQGAKNVVTACRECKVRR-------LV 128 (520)
Q Consensus 83 ~---------------------~~D~Vih~aa~~----~~~~~~--~~~~~~Nv~gt~~ll~aa~~~gvkr-------~V 128 (520)
+ ..|.+|-+|++. ....++ +...++-.....+++-..++.|..| +|
T Consensus 471 ewIg~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~~R~hVV 550 (866)
T COG4982 471 EWIGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLHVV 550 (866)
T ss_pred HHhccccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcccceEEE
Confidence 3 148899999882 111222 3344454555566776666665332 33
Q ss_pred EeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCCCC----ceEEEEecCccccCC
Q 010005 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDG----LLTCALRPSNVFGPG 194 (520)
Q Consensus 129 ~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g----i~~~ilRp~~vyGp~ 194 (520)
.-.|.. ++ .......|+.+|...|.++.+++.+.+ +..|-.++|.+=|.|
T Consensus 551 LPgSPN------rG----------~FGgDGaYgEsK~aldav~~RW~sEs~Wa~~vsl~~A~IGWtrGTG 604 (866)
T COG4982 551 LPGSPN------RG----------MFGGDGAYGESKLALDAVVNRWHSESSWAARVSLAHALIGWTRGTG 604 (866)
T ss_pred ecCCCC------CC----------ccCCCcchhhHHHHHHHHHHHhhccchhhHHHHHhhhheeeecccc
Confidence 222221 00 223456899999999999999887653 233444555555543
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.043 Score=53.86 Aligned_cols=113 Identities=13% Similarity=0.054 Sum_probs=71.5
Q ss_pred EEEEcCCChhHHHHHHHHHhcC--C-cEEEEecCCcccccCCCCCCCCCCCCCCCC-CcEEEEecCCCHHHHHHHHcCCC
Q 010005 11 CVVLNGRGFVGRSLVLRLLELG--K-CIVRVTDSTQSLQLDPSESNSLLPDSLSSG-RAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 11 ILVtGatGfIG~~lv~~L~~~g--~-~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~-~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
|.|+||+|.+|+.++..|+..| . .+|..+|+.... +.... ..+.+..... ..+... ..+..+.++++|
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~-l~~~~--~dl~~~~~~~~~~~i~~-----~~d~~~~~~~aD 72 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEK-LKGVA--MDLQDAVEPLADIKVSI-----TDDPYEAFKDAD 72 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCccc-chHHH--HHHHHhhhhccCcEEEE-----CCchHHHhCCCC
Confidence 5789999999999999999887 2 379998875421 11100 0111111000 111111 112466789999
Q ss_pred EEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEee
Q 010005 87 TVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (520)
Q Consensus 87 ~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~S 131 (520)
+||-.++. .............|+.-.+.+++..++..-+ .++..|
T Consensus 73 iVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t 119 (263)
T cd00650 73 VVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS 119 (263)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 99999987 3333455668888999999999999988633 344443
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.047 Score=55.36 Aligned_cols=97 Identities=15% Similarity=0.136 Sum_probs=56.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcC--CcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELG--KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g--~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
+.++|.|.||||++|..+++.|.++. ..+++.+.. .++..+ .+. +......+. |+ + ...+.+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS------~~saG~-~~~--~~~~~~~v~--~~---~--~~~~~~ 66 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALAS------EESAGE-TLR--FGGKSVTVQ--DA---A--EFDWSQ 66 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEc------cCcCCc-eEE--ECCcceEEE--eC---c--hhhccC
Confidence 45899999999999999999999954 345665321 122111 111 111111111 32 1 122367
Q ss_pred CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccc
Q 010005 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135 (520)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~v 135 (520)
+|+||.+++.. .+..++..+.+.|+ ++|=.|+..=
T Consensus 67 ~Dvvf~a~p~~---------------~s~~~~~~~~~~g~-~VIDlS~~fR 101 (336)
T PRK08040 67 AQLAFFVAGRE---------------ASAAYAEEATNAGC-LVIDSSGLFA 101 (336)
T ss_pred CCEEEECCCHH---------------HHHHHHHHHHHCCC-EEEECChHhc
Confidence 99999877521 23456666667787 6776666543
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.2 Score=48.12 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=67.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCCC--CCC------------CCCCCCCCcEEEEe
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSESN--SLL------------PDSLSSGRAEYHQV 70 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~~--~~l------------~~~~~~~~v~~~~~ 70 (520)
+..+|+|.| .|-+|+++++.|...|..+++++|.+. ..++.|.--. ... .+....-.++.+..
T Consensus 10 ~~~~VlVvG-~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~ 88 (231)
T cd00755 10 RNAHVAVVG-LGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE 88 (231)
T ss_pred hCCCEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee
Confidence 357899998 888999999999999977899988765 1123332110 000 00111123444444
Q ss_pred cCCCHHHHHHHHc-CCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecc
Q 010005 71 DVRDISQIKKVLE-GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (520)
Q Consensus 71 Dl~d~~~l~~~l~-~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~ 133 (520)
.+. ++...+.+. ++|+||.+... ...-..+.+.|++.++ .+|...+.
T Consensus 89 ~i~-~~~~~~l~~~~~D~VvdaiD~--------------~~~k~~L~~~c~~~~i-p~I~s~g~ 136 (231)
T cd00755 89 FLT-PDNSEDLLGGDPDFVVDAIDS--------------IRAKVALIAYCRKRKI-PVISSMGA 136 (231)
T ss_pred ecC-HhHHHHHhcCCCCEEEEcCCC--------------HHHHHHHHHHHHHhCC-CEEEEeCC
Confidence 443 345566664 69999987531 2233568899999987 46654433
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.028 Score=63.45 Aligned_cols=159 Identities=14% Similarity=0.149 Sum_probs=108.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCC----CCCCCCcE--EEEecCCCHHHHHHH
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD----SLSSGRAE--YHQVDVRDISQIKKV 81 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~----~~~~~~v~--~~~~Dl~d~~~l~~~ 81 (520)
.+..+|+||-|--|-.|++.|.++|...++. ..|+.-+.-++. ..+..+++ .-.-|++..+.-.++
T Consensus 1768 eksYii~GGLGGFGLELaqWLi~RGar~lVL--------tSRsGirtGYQa~~vrrWr~~GVqV~vsT~nitt~~ga~~L 1839 (2376)
T KOG1202|consen 1768 EKSYIIVGGLGGFGLELAQWLIQRGARKLVL--------TSRSGIRTGYQALMVRRWRRRGVQVQVSTSNITTAEGARGL 1839 (2376)
T ss_pred cceEEEeccccchhHHHHHHHHhcCceEEEE--------eccccchhhHHHHHHHHHHhcCeEEEEecccchhhhhHHHH
Confidence 4689999999999999999999999645555 455543211111 01122332 223445444545555
Q ss_pred HcC------CCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHHHCC--CCEEEEeecccccccCCCCCCCC
Q 010005 82 LEG------ASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 82 l~~------~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g--vkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++. +-.|||+|+. +....+++..-+.-+.||.|+=...++.- .+-||..||.+- |.+.
T Consensus 1840 i~~s~kl~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvsc-GRGN------ 1912 (2376)
T KOG1202|consen 1840 IEESNKLGPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSC-GRGN------ 1912 (2376)
T ss_pred HHHhhhcccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeecc-cCCC------
Confidence 553 5789999987 23445667777778889999988888774 578999998864 3222
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCcc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNV 190 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v 190 (520)
...+-||.+-...|+++.+-.. +|+|-+.+.-|.|
T Consensus 1913 --------~GQtNYG~aNS~MERiceqRr~-~GfPG~AiQWGAI 1947 (2376)
T KOG1202|consen 1913 --------AGQTNYGLANSAMERICEQRRH-EGFPGTAIQWGAI 1947 (2376)
T ss_pred --------CcccccchhhHHHHHHHHHhhh-cCCCcceeeeecc
Confidence 3457799999999999988654 7888777765543
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.062 Score=45.34 Aligned_cols=70 Identities=24% Similarity=0.291 Sum_probs=49.5
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHH-HcCCCEEE
Q 010005 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGASTVF 89 (520)
Q Consensus 11 ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~-l~~~D~Vi 89 (520)
|+|.| .|-+|..+++.|.+.+ .+|+++|.++.. .+.....++..+.+|.+|++.+.++ +++++.|+
T Consensus 1 vvI~G-~g~~~~~i~~~L~~~~-~~vvvid~d~~~-----------~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv 67 (116)
T PF02254_consen 1 VVIIG-YGRIGREIAEQLKEGG-IDVVVIDRDPER-----------VEELREEGVEVIYGDATDPEVLERAGIEKADAVV 67 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTT-SEEEEEESSHHH-----------HHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEE
T ss_pred eEEEc-CCHHHHHHHHHHHhCC-CEEEEEECCcHH-----------HHHHHhcccccccccchhhhHHhhcCccccCEEE
Confidence 57777 5899999999999966 689997655320 1111223588999999999988775 56789888
Q ss_pred Eccc
Q 010005 90 YVDA 93 (520)
Q Consensus 90 h~aa 93 (520)
=+..
T Consensus 68 ~~~~ 71 (116)
T PF02254_consen 68 ILTD 71 (116)
T ss_dssp EESS
T ss_pred EccC
Confidence 6553
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.26 Score=48.37 Aligned_cols=110 Identities=17% Similarity=0.158 Sum_probs=66.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCCC--------------CCCCCCCCCCCcEEEEe
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSESN--------------SLLPDSLSSGRAEYHQV 70 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~~--------------~~l~~~~~~~~v~~~~~ 70 (520)
+..+|+|.| .|-+|+++++.|...|..+++++|.+. ..++.|.--. ..+.+....-.+..+.
T Consensus 29 ~~s~VlVvG-~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~- 106 (268)
T PRK15116 29 ADAHICVVG-IGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVD- 106 (268)
T ss_pred cCCCEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEe-
Confidence 457899997 889999999999999976899988764 1123332100 0000001111233332
Q ss_pred cCCCHHHHHHHHc-CCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecc
Q 010005 71 DVRDISQIKKVLE-GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (520)
Q Consensus 71 Dl~d~~~l~~~l~-~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~ 133 (520)
+..+++...+.+. ++|+||.+... +..-..+.+.|++.++ .+|.+..+
T Consensus 107 ~~i~~e~~~~ll~~~~D~VIdaiD~--------------~~~k~~L~~~c~~~~i-p~I~~gGa 155 (268)
T PRK15116 107 DFITPDNVAEYMSAGFSYVIDAIDS--------------VRPKAALIAYCRRNKI-PLVTTGGA 155 (268)
T ss_pred cccChhhHHHHhcCCCCEEEEcCCC--------------HHHHHHHHHHHHHcCC-CEEEECCc
Confidence 2224555666664 69999977642 2223458899999987 56655443
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.026 Score=57.36 Aligned_cols=114 Identities=20% Similarity=0.146 Sum_probs=63.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCccc--ccCCCCCCCCCCCCCCCCCcEE-EEec-----CCCHHHHHH
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSL--QLDPSESNSLLPDSLSSGRAEY-HQVD-----VRDISQIKK 80 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~--~l~r~~~~~~l~~~~~~~~v~~-~~~D-----l~d~~~l~~ 80 (520)
|||.|.| +||+|-....-|.+.|| +|+++|++.++ .+.+... .. -.++++- ++-+ ++-..+..+
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GH-eVv~vDid~~KV~~ln~g~~--PI----~EpgLe~ll~~~~~~gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGH-EVVCVDIDESKVELLNKGIS--PI----YEPGLEELLKENLASGRLRFTTDYEE 72 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHhCCCC--CC----cCccHHHHHHhccccCcEEEEcCHHH
Confidence 6899998 99999999999999996 99999987643 0111111 11 1111110 0101 111223567
Q ss_pred HHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEeecccc
Q 010005 81 VLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTADV 135 (520)
Q Consensus 81 ~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~SS~~v 135 (520)
+++.+|++|-+-+.+..... ..+......+++...++-.+ ++|.+=|.-.
T Consensus 73 a~~~adv~fIavgTP~~~dg-----~aDl~~V~ava~~i~~~~~~~~vvV~KSTVP 123 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDG-----SADLSYVEAVAKDIGEILDGKAVVVIKSTVP 123 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCC-----CccHHHHHHHHHHHHhhcCCCeEEEEcCCCC
Confidence 78889999988876332211 22233334444444444322 5555555433
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.074 Score=54.04 Aligned_cols=97 Identities=16% Similarity=0.211 Sum_probs=56.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcE---EEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCI---VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~---V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
+.++|.|.||||++|+.+++.|.+....+ ++.+.. .|+..+ .+ .+... +...-++ |++ .++
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS------~~saGk-~~--~~~~~--~l~v~~~-~~~----~~~ 67 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSS------KRSAGK-TV--QFKGR--EIIIQEA-KIN----SFE 67 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEEC------cccCCC-Ce--eeCCc--ceEEEeC-CHH----Hhc
Confidence 34799999999999999999999644355 554321 222221 11 11111 2222233 333 236
Q ss_pred CCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccc
Q 010005 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135 (520)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~v 135 (520)
++|+||-+++.. .+..+...+.+.|+ .+|=.||..-
T Consensus 68 ~~Divf~a~~~~---------------~s~~~~~~~~~~G~-~VID~Ss~fR 103 (347)
T PRK06728 68 GVDIAFFSAGGE---------------VSRQFVNQAVSSGA-IVIDNTSEYR 103 (347)
T ss_pred CCCEEEECCChH---------------HHHHHHHHHHHCCC-EEEECchhhc
Confidence 899999877531 23456666777775 5666666543
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.22 Score=47.84 Aligned_cols=112 Identities=14% Similarity=0.054 Sum_probs=72.3
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCC-----CCC---------CCCCCCCCCCcEEEEecCC
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSE-----SNS---------LLPDSLSSGRAEYHQVDVR 73 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~-----~~~---------~l~~~~~~~~v~~~~~Dl~ 73 (520)
||||.| .|-+|+++++.|...|..+++++|.+. ..++.|+- +-+ .+.+....-+++.+..++.
T Consensus 1 kVlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVG-AGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 588988 889999999999999977899988765 12233331 100 0001111224556777775
Q ss_pred CHHHH-HHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccc
Q 010005 74 DISQI-KKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (520)
Q Consensus 74 d~~~l-~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg 137 (520)
+.+.+ .+.++++|+||.+.. |...-..+-+.|.+.++ .+|..++.+-+|
T Consensus 80 ~~~~~~~~f~~~~DvVi~a~D--------------n~~aR~~ln~~c~~~~i-plI~~g~~G~~G 129 (234)
T cd01484 80 PEQDFNDTFFEQFHIIVNALD--------------NIIARRYVNGMLIFLIV-PLIESGTEGFKG 129 (234)
T ss_pred hhhhchHHHHhCCCEEEECCC--------------CHHHHHHHHHHHHHcCC-CEEEEcccCCce
Confidence 54332 456789999997642 13334557788888886 688888876665
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.14 Score=53.40 Aligned_cols=114 Identities=17% Similarity=0.114 Sum_probs=73.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--CCCC------------CCCCCCCCcEEEEe
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--NSLL------------PDSLSSGRAEYHQV 70 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~--~~~l------------~~~~~~~~v~~~~~ 70 (520)
+..+|+|.| .|-+|+++++.|...|..+++++|.+. ..++.|+.- .... .+....-+++.+..
T Consensus 37 ~~~~VlivG-~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~ 115 (390)
T PRK07411 37 KAASVLCIG-TGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYET 115 (390)
T ss_pred hcCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEec
Confidence 357899998 788999999999999987899988764 223444311 0000 01111224455555
Q ss_pred cCCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccc
Q 010005 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (520)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg 137 (520)
.+.. +...+.+.++|+||.+.. ++. .-..+-++|.+.++ .+|+.+...-||
T Consensus 116 ~~~~-~~~~~~~~~~D~Vvd~~d------~~~--------~r~~ln~~~~~~~~-p~v~~~~~g~~g 166 (390)
T PRK07411 116 RLSS-ENALDILAPYDVVVDGTD------NFP--------TRYLVNDACVLLNK-PNVYGSIFRFEG 166 (390)
T ss_pred ccCH-HhHHHHHhCCCEEEECCC------CHH--------HHHHHHHHHHHcCC-CEEEEEEccCEE
Confidence 5543 456778899999998763 222 22335578888885 688887776665
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.065 Score=53.70 Aligned_cols=111 Identities=12% Similarity=0.078 Sum_probs=71.2
Q ss_pred EEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCC-CCcEEEEecCCCHHHHHHHHcCCCEE
Q 010005 11 CVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSS-GRAEYHQVDVRDISQIKKVLEGASTV 88 (520)
Q Consensus 11 ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~~~~-~~v~~~~~Dl~d~~~l~~~l~~~D~V 88 (520)
|.|.| +|.+|+.++..|+..|. .+++++|+.... .... ...+.+.... .......+ .| .+.++++|+|
T Consensus 1 i~iiG-aG~VG~~~a~~l~~~~~~~el~l~D~~~~~--~~g~-~~DL~~~~~~~~~~~i~~~--~~----~~~l~~aDiV 70 (300)
T cd00300 1 ITIIG-AGNVGAAVAFALIAKGLASELVLVDVNEEK--AKGD-ALDLSHASAFLATGTIVRG--GD----YADAADADIV 70 (300)
T ss_pred CEEEC-CCHHHHHHHHHHHhcCCCCEEEEEeCCccH--HHHH-HHhHHHhccccCCCeEEEC--CC----HHHhCCCCEE
Confidence 46788 48999999999998873 379998875421 0000 0011111110 11222221 12 3478899999
Q ss_pred EEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEee
Q 010005 89 FYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (520)
Q Consensus 89 ih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~S 131 (520)
|.+++. .....+.......|+.-.+.+.+..++++.+ .++..|
T Consensus 71 Iitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 71 VITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 999997 3344577888999999999999999998743 455444
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.15 Score=49.46 Aligned_cols=94 Identities=26% Similarity=0.279 Sum_probs=65.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--CCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~~D 86 (520)
|+|||.|||+= |+.++..|.++| + |.+. . .+.-.. .+.. ...+..+...+-+.|.+.+.+.++ +++
T Consensus 1 m~ILvlgGTtE-~r~la~~L~~~g-~-v~~s-v-----~t~~g~--~~~~-~~~~~~~v~~G~lg~~~~l~~~l~~~~i~ 68 (249)
T PF02571_consen 1 MKILVLGGTTE-GRKLAERLAEAG-Y-VIVS-V-----ATSYGG--ELLK-PELPGLEVRVGRLGDEEGLAEFLRENGID 68 (249)
T ss_pred CEEEEEechHH-HHHHHHHHHhcC-C-EEEE-E-----EhhhhH--hhhc-cccCCceEEECCCCCHHHHHHHHHhCCCc
Confidence 79999999975 999999999999 4 3320 0 000000 0000 012356788888889999999995 699
Q ss_pred EEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCE
Q 010005 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRR 126 (520)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr 126 (520)
.||+.. +++. .+.+.|+.++|++.|+.-
T Consensus 69 ~vIDAT------HPfA------~~is~na~~a~~~~~ipy 96 (249)
T PF02571_consen 69 AVIDAT------HPFA------AEISQNAIEACRELGIPY 96 (249)
T ss_pred EEEECC------CchH------HHHHHHHHHHHhhcCcce
Confidence 999776 3343 345688999999999853
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.046 Score=58.09 Aligned_cols=103 Identities=13% Similarity=0.150 Sum_probs=67.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHH-HcCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGA 85 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~-l~~~ 85 (520)
.+++|+|.|+ |.+|+.+++.|.+.| ++|+++|.+... .. .+.+ ...++..+.+|..|.+.+.++ ++++
T Consensus 230 ~~~~iiIiG~-G~~g~~l~~~L~~~~-~~v~vid~~~~~----~~---~~~~--~~~~~~~i~gd~~~~~~L~~~~~~~a 298 (453)
T PRK09496 230 PVKRVMIVGG-GNIGYYLAKLLEKEG-YSVKLIERDPER----AE---ELAE--ELPNTLVLHGDGTDQELLEEEGIDEA 298 (453)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCC-CeEEEEECCHHH----HH---HHHH--HCCCCeEEECCCCCHHHHHhcCCccC
Confidence 3689999996 999999999999999 589996654310 00 0000 113577899999999888544 4679
Q ss_pred CEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccc
Q 010005 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (520)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~ 134 (520)
|+||-+... + ..|.. +...|++.+++++|......
T Consensus 299 ~~vi~~~~~-----~-----~~n~~----~~~~~~~~~~~~ii~~~~~~ 333 (453)
T PRK09496 299 DAFIALTND-----D-----EANIL----SSLLAKRLGAKKVIALVNRP 333 (453)
T ss_pred CEEEECCCC-----c-----HHHHH----HHHHHHHhCCCeEEEEECCc
Confidence 999844331 1 23433 33456667777776555443
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.11 Score=51.93 Aligned_cols=82 Identities=18% Similarity=0.173 Sum_probs=52.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCEE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~V 88 (520)
.||.|.||+||.|..|++.|....+.++..+. .... .+-.+ ..++++++|+|
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~--------s~~~-----------------~~~~~---~~~~~~~~D~v 53 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIA--------PDRR-----------------KDAAE---RAKLLNAADVA 53 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEe--------cccc-----------------cCcCC---HhHhhcCCCEE
Confidence 47999999999999999999998755555521 1110 01112 23556789999
Q ss_pred EEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccc
Q 010005 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (520)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~ 134 (520)
|-+.... .+..++..+.+.|+ ++|=.|+..
T Consensus 54 Flalp~~---------------~s~~~~~~~~~~g~-~VIDlSadf 83 (310)
T TIGR01851 54 ILCLPDD---------------AAREAVSLVDNPNT-CIIDASTAY 83 (310)
T ss_pred EECCCHH---------------HHHHHHHHHHhCCC-EEEECChHH
Confidence 8766421 22345555666676 677777653
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.1 Score=52.25 Aligned_cols=33 Identities=12% Similarity=0.150 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEe
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~ 39 (520)
+|+||.|.||+||-|..|++.|....+.++...
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ 33 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILI 33 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEe
Confidence 468999999999999999999999886676663
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.023 Score=50.75 Aligned_cols=75 Identities=16% Similarity=0.252 Sum_probs=46.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
.++++|+|+|+ |.+|..+++.|.+.|.++|++.|+. ..+. .+.+.. +...+..+..|. .+.+++
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~--------~~~~~~~~~~~---~~~~~~~~~~~~---~~~~~~ 81 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRT--------LEKAKALAERF---GELGIAIAYLDL---EELLAE 81 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCC--------HHHHHHHHHHH---hhcccceeecch---hhcccc
Confidence 35689999996 9999999999999863589985543 2210 011111 111112233333 334788
Q ss_pred CCEEEEcccCC
Q 010005 85 ASTVFYVDATD 95 (520)
Q Consensus 85 ~D~Vih~aa~~ 95 (520)
+|+||.+....
T Consensus 82 ~Dvvi~~~~~~ 92 (155)
T cd01065 82 ADLIINTTPVG 92 (155)
T ss_pred CCEEEeCcCCC
Confidence 99999998763
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.072 Score=55.16 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=29.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEec
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD 40 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D 40 (520)
..++|.|.||.|.+|..++..|.+.| +.|+++|
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G-~~V~~~d 129 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSG-YQVRILE 129 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCC-CeEEEeC
Confidence 45899999999999999999999999 4899954
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.086 Score=54.58 Aligned_cols=67 Identities=25% Similarity=0.371 Sum_probs=50.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCE
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~ 87 (520)
|++|+|.|| |.+|+.++..+.+.| ++|+++|.... .+. ... --..+.+|..|.+.+.++.+.+|+
T Consensus 2 ~~~igilG~-Gql~~ml~~aa~~lG-~~v~~~d~~~~-----~pa-----~~~---ad~~~~~~~~D~~~l~~~a~~~dv 66 (372)
T PRK06019 2 MKTIGIIGG-GQLGRMLALAAAPLG-YKVIVLDPDPD-----SPA-----AQV---ADEVIVADYDDVAALRELAEQCDV 66 (372)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcC-CEEEEEeCCCC-----Cch-----hHh---CceEEecCCCCHHHHHHHHhcCCE
Confidence 478999996 899999999999999 69999664321 011 000 124667899999999999999998
Q ss_pred EE
Q 010005 88 VF 89 (520)
Q Consensus 88 Vi 89 (520)
|.
T Consensus 67 it 68 (372)
T PRK06019 67 IT 68 (372)
T ss_pred EE
Confidence 74
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.26 Score=46.26 Aligned_cols=83 Identities=16% Similarity=0.128 Sum_probs=54.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC-CCCCC------------CCCCCCCcEEEEec
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES-NSLLP------------DSLSSGRAEYHQVD 71 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~-~~~l~------------~~~~~~~v~~~~~D 71 (520)
+..+|+|.| .|-+|+.++..|...|..+++++|.+. ..++.|... ..... +.....+++.+..+
T Consensus 20 ~~~~V~IvG-~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~ 98 (200)
T TIGR02354 20 EQATVAICG-LGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEK 98 (200)
T ss_pred hCCcEEEEC-cCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeee
Confidence 457899999 577999999999999966799999872 122444311 00000 00111234455566
Q ss_pred CCCHHHHHHHHcCCCEEEEc
Q 010005 72 VRDISQIKKVLEGASTVFYV 91 (520)
Q Consensus 72 l~d~~~l~~~l~~~D~Vih~ 91 (520)
+. .+.+.++++++|+||.+
T Consensus 99 i~-~~~~~~~~~~~DlVi~a 117 (200)
T TIGR02354 99 IT-EENIDKFFKDADIVCEA 117 (200)
T ss_pred CC-HhHHHHHhcCCCEEEEC
Confidence 64 46678889999999977
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.26 Score=48.79 Aligned_cols=111 Identities=13% Similarity=0.104 Sum_probs=69.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--------------CCCCCCCCCCCCcEEEEe
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--------------NSLLPDSLSSGRAEYHQV 70 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~--------------~~~l~~~~~~~~v~~~~~ 70 (520)
+..+|||.| .|-+|..+++.|...|..+|+++|.+. ..++.|+-- ...+.+....-+++.+..
T Consensus 18 ~~s~VLIvG-~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~ 96 (286)
T cd01491 18 QKSNVLISG-LGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTG 96 (286)
T ss_pred hcCcEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 357899998 778999999999999987899998764 111222200 000111111112333333
Q ss_pred cCCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccccccc
Q 010005 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFD 138 (520)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~ 138 (520)
++ + .+.+.++|+||.+.. +. ..-..+-++|++.++ .||.+.+.+.+|.
T Consensus 97 ~~-~----~~~l~~fdvVV~~~~------~~--------~~~~~in~~c~~~~i-pfI~a~~~G~~G~ 144 (286)
T cd01491 97 PL-T----TDELLKFQVVVLTDA------SL--------EDQLKINEFCHSPGI-KFISADTRGLFGS 144 (286)
T ss_pred cC-C----HHHHhcCCEEEEecC------CH--------HHHHHHHHHHHHcCC-EEEEEeccccEEE
Confidence 32 2 345678999987642 22 222346689999987 7999999888874
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.27 Score=50.37 Aligned_cols=107 Identities=12% Similarity=0.049 Sum_probs=69.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC---CCCCCC----------CC--CCCCcEEEE
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES---NSLLPD----------SL--SSGRAEYHQ 69 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~---~~~l~~----------~~--~~~~v~~~~ 69 (520)
+..+|+|.| .|-+|++++..|.+.|..+++++|-+. ..++.|... ...+.+ .+ ..+++..+.
T Consensus 175 ~~~~VaIVG-~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~~~ 253 (393)
T PRK06153 175 EGQRIAIIG-LGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVPHP 253 (393)
T ss_pred hhCcEEEEc-CCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEEEe
Confidence 357999998 777999999999999987899998864 234555531 111111 00 123455566
Q ss_pred ecCCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEee
Q 010005 70 VDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131 (520)
Q Consensus 70 ~Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~S 131 (520)
..+ +++.+. .+.++|+||.|.- |..+-.-+.++|.+.++ -+|.++
T Consensus 254 ~~I-~~~n~~-~L~~~DiV~dcvD--------------n~~aR~~ln~~a~~~gI-P~Id~G 298 (393)
T PRK06153 254 EYI-DEDNVD-ELDGFTFVFVCVD--------------KGSSRKLIVDYLEALGI-PFIDVG 298 (393)
T ss_pred ecC-CHHHHH-HhcCCCEEEEcCC--------------CHHHHHHHHHHHHHcCC-CEEEee
Confidence 566 555444 6789999998874 23333457788888887 466544
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.078 Score=55.69 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=30.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~ 43 (520)
+|+|.|.| .|++|..++..|.++| ++|+++|+..
T Consensus 3 ~~kI~VIG-lG~~G~~~A~~La~~G-~~V~~~D~~~ 36 (415)
T PRK11064 3 FETISVIG-LGYIGLPTAAAFASRQ-KQVIGVDINQ 36 (415)
T ss_pred ccEEEEEC-cchhhHHHHHHHHhCC-CEEEEEeCCH
Confidence 58999997 8999999999999999 5999988754
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.024 Score=49.60 Aligned_cols=77 Identities=14% Similarity=0.274 Sum_probs=49.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
.++++++|.|+ |-.|+.++..|.+.|..+|+++ .|+.++ ..+.+.+....++. .++ +++.+.+.+
T Consensus 10 l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~--------nRt~~ra~~l~~~~~~~~~~~--~~~---~~~~~~~~~ 75 (135)
T PF01488_consen 10 LKGKRVLVIGA-GGAARAVAAALAALGAKEITIV--------NRTPERAEALAEEFGGVNIEA--IPL---EDLEEALQE 75 (135)
T ss_dssp GTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEE--------ESSHHHHHHHHHHHTGCSEEE--EEG---GGHCHHHHT
T ss_pred cCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEE--------ECCHHHHHHHHHHcCccccce--eeH---HHHHHHHhh
Confidence 35789999995 8899999999999997669994 444331 11111121122333 333 334577888
Q ss_pred CCEEEEcccCCC
Q 010005 85 ASTVFYVDATDL 96 (520)
Q Consensus 85 ~D~Vih~aa~~~ 96 (520)
+|+||++.+...
T Consensus 76 ~DivI~aT~~~~ 87 (135)
T PF01488_consen 76 ADIVINATPSGM 87 (135)
T ss_dssp ESEEEE-SSTTS
T ss_pred CCeEEEecCCCC
Confidence 999999987643
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=94.60 E-value=1.8 Score=43.00 Aligned_cols=91 Identities=14% Similarity=0.173 Sum_probs=58.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~-- 84 (520)
+..||+|-|-||.+|+.+.+.|...|...|.. +.+..... + ...+.-..++.++-+.
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~--------V~p~~~~~-----------~--v~G~~~y~sv~dlp~~~~ 63 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAYGTNIVGG--------VTPGKGGT-----------T--VLGLPVFDSVKEAVEETG 63 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhCCCCEEEE--------ECCCCCcc-----------e--ecCeeccCCHHHHhhccC
Confidence 45799999999999999999999998433443 22221100 0 1122333445555554
Q ss_pred CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecc
Q 010005 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (520)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~ 133 (520)
+|.++-+.. -.....+++.|.+.|+|..|.+|+-
T Consensus 64 ~Dlavi~vp---------------a~~v~~~l~e~~~~Gvk~avIis~G 97 (286)
T TIGR01019 64 ANASVIFVP---------------APFAADAIFEAIDAGIELIVCITEG 97 (286)
T ss_pred CCEEEEecC---------------HHHHHHHHHHHHHCCCCEEEEECCC
Confidence 788876654 2223457788888999988877764
|
ATP citrate lyases appear to form an outgroup. |
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.2 Score=57.21 Aligned_cols=115 Identities=10% Similarity=0.047 Sum_probs=73.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--CCCC------------CCCCCCCCcEEEEe
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--NSLL------------PDSLSSGRAEYHQV 70 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~--~~~l------------~~~~~~~~v~~~~~ 70 (520)
+..+|+|.| .|-+|+.++..|...|.-+++++|.+. ..++.|+-- .... .+....-+++.+..
T Consensus 331 ~~srVlVvG-lGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~ 409 (989)
T PRK14852 331 LRSRVAIAG-LGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPE 409 (989)
T ss_pred hcCcEEEEC-CcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEec
Confidence 357899998 788999999999999987899988765 122444311 0000 01111123445555
Q ss_pred cCCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccccc
Q 010005 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (520)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vy 136 (520)
.+ +.+.+.+.++++|+||.+.-. +. +..-..+.+.|++.++ .+|+.++.+-+
T Consensus 410 ~I-~~en~~~fl~~~DiVVDa~D~------~~------~~~rr~l~~~c~~~~I-P~I~ag~~G~~ 461 (989)
T PRK14852 410 GV-AAETIDAFLKDVDLLVDGIDF------FA------LDIRRRLFNRALELGI-PVITAGPLGYS 461 (989)
T ss_pred CC-CHHHHHHHhhCCCEEEECCCC------cc------HHHHHHHHHHHHHcCC-CEEEeeccccC
Confidence 55 556788899999999966521 11 1223457778988987 58887765444
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.26 Score=54.80 Aligned_cols=111 Identities=11% Similarity=0.105 Sum_probs=71.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--CCCC------------CCCCCCCCcEEEEe
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--NSLL------------PDSLSSGRAEYHQV 70 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~--~~~l------------~~~~~~~~v~~~~~ 70 (520)
+..+|+|.| .|-+|++++..|...|.-+++++|.+. ..++.|+-- .... .+.....+++.+..
T Consensus 42 ~~~~VlIvG-~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~ 120 (679)
T PRK14851 42 AEAKVAIPG-MGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPA 120 (679)
T ss_pred hcCeEEEEC-cCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEec
Confidence 357999998 888999999999999977899988765 223444321 0000 01111234566667
Q ss_pred cCCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeec
Q 010005 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (520)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS 132 (520)
.+. .+.+.+.++++|+||.+.- ++. +..-..+.++|++.++ .+|+.+.
T Consensus 121 ~i~-~~n~~~~l~~~DvVid~~D------~~~------~~~r~~l~~~c~~~~i-P~i~~g~ 168 (679)
T PRK14851 121 GIN-ADNMDAFLDGVDVVLDGLD------FFQ------FEIRRTLFNMAREKGI-PVITAGP 168 (679)
T ss_pred CCC-hHHHHHHHhCCCEEEECCC------CCc------HHHHHHHHHHHHHCCC-CEEEeec
Confidence 774 5567888999999996652 110 1122357788999987 4776653
|
|
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.6 Score=44.47 Aligned_cols=112 Identities=16% Similarity=0.116 Sum_probs=69.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCccc--ccCCCCCC--CCCCCC--------C--CCCCcEEE-EecC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSL--QLDPSESN--SLLPDS--------L--SSGRAEYH-QVDV 72 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~--~l~r~~~~--~~l~~~--------~--~~~~v~~~-~~Dl 72 (520)
..+|+|.| -|-+|++.+++|.+.|.-+++++|.+.-. ++.|+-.. +...+. . -.|..+.. .-|.
T Consensus 30 ~~~V~VvG-iGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f 108 (263)
T COG1179 30 QAHVCVVG-IGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDF 108 (263)
T ss_pred hCcEEEEe-cCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhh
Confidence 46899998 77799999999999997789998886510 12221100 000000 0 01222222 2333
Q ss_pred CCHHHHHHHHc-CCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccc
Q 010005 73 RDISQIKKVLE-GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (520)
Q Consensus 73 ~d~~~l~~~l~-~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg 137 (520)
-+++.+++.+. ++|+||.+.- |+..-..|+..|++++.+ ++||.++-|
T Consensus 109 ~t~en~~~~~~~~~DyvIDaiD--------------~v~~Kv~Li~~c~~~ki~---vIss~Gag~ 157 (263)
T COG1179 109 ITEENLEDLLSKGFDYVIDAID--------------SVRAKVALIAYCRRNKIP---VISSMGAGG 157 (263)
T ss_pred hCHhHHHHHhcCCCCEEEEchh--------------hhHHHHHHHHHHHHcCCC---EEeeccccC
Confidence 45666777775 4899997752 255556799999999873 567776643
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.2 Score=51.12 Aligned_cols=110 Identities=14% Similarity=0.132 Sum_probs=62.8
Q ss_pred CeEEEEcCCChhHHHHHHHHH-hcCCcE---EEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLL-ELGKCI---VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~-~~g~~~---V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
|+|.|.||||.+|+.+++.|. ++. +. ++.+.. .|+..+ .. ... +.+...-++.+. +.+.+
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~-fp~~~~~~~ss------~~s~g~--~~-~f~--~~~~~v~~~~~~----~~~~~ 64 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERD-FDAIRPVFFST------SQLGQA--AP-SFG--GTTGTLQDAFDI----DALKA 64 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCC-CccccEEEEEc------hhhCCC--cC-CCC--CCcceEEcCccc----ccccC
Confidence 479999999999999999999 444 43 444221 122211 00 111 112233344332 24568
Q ss_pred CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEeecccccccCCCCCCCCCCCccCCCCCCCh
Q 010005 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDL 159 (520)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~ 159 (520)
+|+||.+++. ..+..+...+.++|.. .+|=.||+ + ..+++.|....+.++
T Consensus 65 vDivffa~g~---------------~~s~~~~p~~~~aG~~~~VIDnSSa--~--------Rmd~dVPLVVPeVN~ 115 (366)
T TIGR01745 65 LDIIITCQGG---------------DYTNEIYPKLRESGWQGYWIDAASS--L--------RMKDDAVIILDPVNQ 115 (366)
T ss_pred CCEEEEcCCH---------------HHHHHHHHHHHhCCCCeEEEECChh--h--------hcCCCCCEEeCCcCH
Confidence 9999998863 2245677888889852 44444444 3 345566554455555
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.22 Score=49.90 Aligned_cols=111 Identities=12% Similarity=0.051 Sum_probs=67.2
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEEecCCCHHHHHHHHcCCCEE
Q 010005 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLEGASTV 88 (520)
Q Consensus 11 ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~~~D~V 88 (520)
|.|+|+ |.+|+.++..|...|..+|+++|+.... .+.... .+.+.. ....... ... .| . +.++++|+|
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~--~~g~~~-dl~~~~~~~~~~~~I-~~t-~d---~-~~l~dADiV 70 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGL--PQGKAL-DISQAAPILGSDTKV-TGT-ND---Y-EDIAGSDVV 70 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcH--HHHHHH-HHHHhhhhcCCCeEE-EEc-CC---H-HHhCCCCEE
Confidence 468897 9999999999988873389998886531 110000 001100 0011121 111 12 2 347899999
Q ss_pred EEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEee
Q 010005 89 FYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (520)
Q Consensus 89 ih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~S 131 (520)
|-+++.+ ....+.......|+.-.+.+++...+...+ .+|.+|
T Consensus 71 Iit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~s 115 (300)
T cd01339 71 VITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVT 115 (300)
T ss_pred EEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 9999872 233444556778898889999988887644 344444
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.42 Score=47.38 Aligned_cols=33 Identities=27% Similarity=0.484 Sum_probs=29.2
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~ 43 (520)
||||.| .|-+|+++++.|...|..+++++|.+.
T Consensus 1 kVLIvG-aGGLGs~vA~~La~aGVg~ItlvD~D~ 33 (307)
T cd01486 1 KCLLLG-AGTLGCNVARNLLGWGVRHITFVDSGK 33 (307)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 588987 788999999999999987899998764
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.14 Score=46.65 Aligned_cols=56 Identities=21% Similarity=0.258 Sum_probs=44.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
..+++|+|+|+++.+|..+++.|.++|. +|++.+ |. .+++.+.+.++
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~--------r~------------------------~~~l~~~l~~a 88 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCH--------SK------------------------TKNLKEHTKQA 88 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEE--------CC------------------------chhHHHHHhhC
Confidence 3578999999877899999999999994 788733 22 13567788899
Q ss_pred CEEEEcccC
Q 010005 86 STVFYVDAT 94 (520)
Q Consensus 86 D~Vih~aa~ 94 (520)
|+||-+.+.
T Consensus 89 DiVIsat~~ 97 (168)
T cd01080 89 DIVIVAVGK 97 (168)
T ss_pred CEEEEcCCC
Confidence 999988765
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.35 Score=45.85 Aligned_cols=107 Identities=21% Similarity=0.183 Sum_probs=69.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCC----------CCCCCCCCCCCCCcEEE---EecCCCH
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSE----------SNSLLPDSLSSGRAEYH---QVDVRDI 75 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~----------~~~~l~~~~~~~~v~~~---~~Dl~d~ 75 (520)
|+|-++| -|-.|..++++|++.|| +|+++|+.+. .+.. +..++...+..++..++ .+|+.|.
T Consensus 1 M~iGmiG-LGrMG~n~v~rl~~~gh-dvV~yD~n~~---av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~ 75 (300)
T COG1023 1 MQIGMIG-LGRMGANLVRRLLDGGH-DVVGYDVNQT---AVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDA 75 (300)
T ss_pred Ccceeec-cchhhHHHHHHHHhCCC-eEEEEcCCHH---HHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHH
Confidence 4677776 89999999999999995 9999998762 1111 01122233455666654 4667764
Q ss_pred --HHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccc
Q 010005 76 --SQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (520)
Q Consensus 76 --~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~ 134 (520)
+++...++.-|+||.-+- . |..-+.+-.+...+.|+ +|+=++|..
T Consensus 76 vi~~la~~L~~GDivIDGGN-----S--------~y~Ds~rr~~~l~~kgi-~flD~GTSG 122 (300)
T COG1023 76 VIDDLAPLLSAGDIVIDGGN-----S--------NYKDSLRRAKLLAEKGI-HFLDVGTSG 122 (300)
T ss_pred HHHHHHhhcCCCCEEEECCc-----c--------chHHHHHHHHHHHhcCC-eEEeccCCC
Confidence 567777777899996542 1 22333455666777887 777766543
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.17 Score=51.27 Aligned_cols=74 Identities=23% Similarity=0.261 Sum_probs=45.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCH---HHHHHHHc-
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI---SQIKKVLE- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~---~~l~~~l~- 83 (520)
+.+|||+||+|-+|+..++.+.+.|. .+++. ..++.....+ ...+...+ .|.++. +++.++..
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~-------~~s~~k~~~~----~~lGAd~v-i~y~~~~~~~~v~~~t~g 209 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGA-TVVAV-------VSSSEKLELL----KELGADHV-INYREEDFVEQVRELTGG 209 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCC-cEEEE-------ecCHHHHHHH----HhcCCCEE-EcCCcccHHHHHHHHcCC
Confidence 67999999999999999999999994 55542 2333221111 11122221 223332 34445554
Q ss_pred -CCCEEEEcccC
Q 010005 84 -GASTVFYVDAT 94 (520)
Q Consensus 84 -~~D~Vih~aa~ 94 (520)
++|+|++..+.
T Consensus 210 ~gvDvv~D~vG~ 221 (326)
T COG0604 210 KGVDVVLDTVGG 221 (326)
T ss_pred CCceEEEECCCH
Confidence 59999988873
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.17 Score=50.08 Aligned_cols=56 Identities=13% Similarity=0.266 Sum_probs=44.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
-++++|+|.|++|.+|+.++..|+++|. +|++.+ |. ...+.+.++++
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~--------~~------------------------t~~L~~~~~~a 203 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICH--------SR------------------------TQNLPELVKQA 203 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEe--------CC------------------------chhHHHHhccC
Confidence 3578999999999999999999999995 888832 21 12356667899
Q ss_pred CEEEEcccC
Q 010005 86 STVFYVDAT 94 (520)
Q Consensus 86 D~Vih~aa~ 94 (520)
|+||++.+.
T Consensus 204 DIvI~AtG~ 212 (283)
T PRK14192 204 DIIVGAVGK 212 (283)
T ss_pred CEEEEccCC
Confidence 999999864
|
|
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.14 Score=52.37 Aligned_cols=76 Identities=21% Similarity=0.213 Sum_probs=49.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++++|||.||+|-+|+..++.....|...|++ .++.+...+.+.+ + .-...|..|++-.++..+
T Consensus 156 ~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t---------~~s~e~~~l~k~l---G-Ad~vvdy~~~~~~e~~kk~~ 222 (347)
T KOG1198|consen 156 SKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVT---------ACSKEKLELVKKL---G-ADEVVDYKDENVVELIKKYT 222 (347)
T ss_pred CCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEE---------EcccchHHHHHHc---C-CcEeecCCCHHHHHHHHhhc
Confidence 356899999999999999999999888324554 3333222222222 2 223457777554444444
Q ss_pred --CCCEEEEcccC
Q 010005 84 --GASTVFYVDAT 94 (520)
Q Consensus 84 --~~D~Vih~aa~ 94 (520)
++|+|++|.+.
T Consensus 223 ~~~~DvVlD~vg~ 235 (347)
T KOG1198|consen 223 GKGVDVVLDCVGG 235 (347)
T ss_pred CCCccEEEECCCC
Confidence 59999999986
|
|
| >PRK06901 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.35 Score=48.32 Aligned_cols=94 Identities=7% Similarity=0.033 Sum_probs=56.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCC--cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~--~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
++|.| ||||-+|+.+.+.|.+++. .+++.++.. .++..+ .+.-.+-++..-++.+. .++++|
T Consensus 4 ~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~-----~~s~gk-----~i~f~g~~~~V~~l~~~-----~f~~vD 67 (322)
T PRK06901 4 LNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIE-----PFGEEQ-----GIRFNNKAVEQIAPEEV-----EWADFN 67 (322)
T ss_pred ceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccc-----cccCCC-----EEEECCEEEEEEECCcc-----CcccCC
Confidence 68999 9999999999999999872 135553322 022221 11112223333444332 357899
Q ss_pred EEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccc
Q 010005 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135 (520)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~v 135 (520)
++|. ++.. .+......+.+.|+ .+|=.||+.-
T Consensus 68 ia~f-ag~~---------------~s~~~ap~a~~aG~-~VIDnSsa~R 99 (322)
T PRK06901 68 YVFF-AGKM---------------AQAEHLAQAAEAGC-IVIDLYGICA 99 (322)
T ss_pred EEEE-cCHH---------------HHHHHHHHHHHCCC-EEEECChHhh
Confidence 9998 7632 23456667788887 5666666543
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.29 Score=49.47 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=51.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCE
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~ 87 (520)
+++|.|+| .|.+|+-++.+-.+.| ++|+++|...+ .+. ..---..+.++..|.+.+.++.++||+
T Consensus 1 ~~tvgIlG-GGQLgrMm~~aa~~lG-~~v~vLdp~~~-----~PA--------~~va~~~i~~~~dD~~al~ela~~~DV 65 (375)
T COG0026 1 MKTVGILG-GGQLGRMMALAAARLG-IKVIVLDPDAD-----APA--------AQVADRVIVAAYDDPEALRELAAKCDV 65 (375)
T ss_pred CCeEEEEc-CcHHHHHHHHHHHhcC-CEEEEecCCCC-----Cch--------hhcccceeecCCCCHHHHHHHHhhCCE
Confidence 47899998 8999999999999999 59999664331 111 001235677888899999999999998
Q ss_pred EE
Q 010005 88 VF 89 (520)
Q Consensus 88 Vi 89 (520)
|=
T Consensus 66 iT 67 (375)
T COG0026 66 IT 67 (375)
T ss_pred EE
Confidence 83
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.27 Score=52.17 Aligned_cols=75 Identities=15% Similarity=0.072 Sum_probs=47.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc-CC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-GA 85 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-~~ 85 (520)
++++|+|||++| +|.+.++.|.++| ++|.+.|.... ...+. ...+...+++...++-. . ..+. ++
T Consensus 4 ~~k~v~v~G~g~-~G~s~a~~l~~~G-~~V~~~d~~~~---~~~~~----~~~l~~~g~~~~~~~~~--~---~~~~~~~ 69 (447)
T PRK02472 4 QNKKVLVLGLAK-SGYAAAKLLHKLG-ANVTVNDGKPF---SENPE----AQELLEEGIKVICGSHP--L---ELLDEDF 69 (447)
T ss_pred CCCEEEEEeeCH-HHHHHHHHHHHCC-CEEEEEcCCCc---cchhH----HHHHHhcCCEEEeCCCC--H---HHhcCcC
Confidence 468999999988 9999999999999 59999775431 11110 01112234555443321 1 1233 48
Q ss_pred CEEEEcccCC
Q 010005 86 STVFYVDATD 95 (520)
Q Consensus 86 D~Vih~aa~~ 95 (520)
|.||..+|..
T Consensus 70 d~vV~s~gi~ 79 (447)
T PRK02472 70 DLMVKNPGIP 79 (447)
T ss_pred CEEEECCCCC
Confidence 9999999874
|
|
| >COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.44 E-value=1 Score=43.26 Aligned_cols=96 Identities=13% Similarity=0.099 Sum_probs=64.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--C
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~ 84 (520)
++|+|+|.|||+= ++.|++.|...+. .+++.-. ..+... + ..+......+-..+.+.+.+.++ +
T Consensus 1 ~~~~ilvlGGT~D-ar~la~~L~~~~~-~~~~ss~-----t~~g~~---l----~~~~~~~~~~G~l~~e~l~~~l~e~~ 66 (257)
T COG2099 1 SMMRILLLGGTSD-ARALAKKLAAAPV-DIILSSL-----TGYGAK---L----AEQIGPVRVGGFLGAEGLAAFLREEG 66 (257)
T ss_pred CCceEEEEeccHH-HHHHHHHhhccCc-cEEEEEc-----cccccc---c----hhccCCeeecCcCCHHHHHHHHHHcC
Confidence 3689999999986 8899999999884 3332111 122221 1 11112256666778889999986 5
Q ss_pred CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEE
Q 010005 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (520)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V 128 (520)
+|.||+.. .++. .+.+.|.+++|++.|+.-+.
T Consensus 67 i~llIDAT------HPyA------a~iS~Na~~aake~gipy~r 98 (257)
T COG2099 67 IDLLIDAT------HPYA------ARISQNAARAAKETGIPYLR 98 (257)
T ss_pred CCEEEECC------ChHH------HHHHHHHHHHHHHhCCcEEE
Confidence 89999654 3333 45578899999999986444
|
|
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.29 Score=51.03 Aligned_cols=70 Identities=17% Similarity=0.294 Sum_probs=50.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--C
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~ 84 (520)
+.|+|+|+| +|..|..++..+.+.| ++|+++|..+. .+. . .. .-..+..|..|.+.+.++++ +
T Consensus 11 ~~~~ilIiG-~g~~~~~~~~a~~~~G-~~v~~~~~~~~-----~~~---~--~~---ad~~~~~~~~d~~~l~~~~~~~~ 75 (395)
T PRK09288 11 SATRVMLLG-SGELGKEVAIEAQRLG-VEVIAVDRYAN-----APA---M--QV---AHRSHVIDMLDGDALRAVIEREK 75 (395)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEeCCCC-----Cch---H--Hh---hhheEECCCCCHHHHHHHHHHhC
Confidence 357999998 5799999999999999 58888665331 010 0 00 11356788889998888887 7
Q ss_pred CCEEEEc
Q 010005 85 ASTVFYV 91 (520)
Q Consensus 85 ~D~Vih~ 91 (520)
+|+|+-.
T Consensus 76 id~vi~~ 82 (395)
T PRK09288 76 PDYIVPE 82 (395)
T ss_pred CCEEEEe
Confidence 9999843
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.24 Score=54.69 Aligned_cols=72 Identities=11% Similarity=0.094 Sum_probs=54.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHH-HcCCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAS 86 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~-l~~~D 86 (520)
.++|+|.| .|-+|+.+++.|.++|+ +++++|.++. +- +..+..+...+.||.+|++.++++ ++++|
T Consensus 400 ~~~vII~G-~Gr~G~~va~~L~~~g~-~vvvID~d~~----~v-------~~~~~~g~~v~~GDat~~~~L~~agi~~A~ 466 (601)
T PRK03659 400 KPQVIIVG-FGRFGQVIGRLLMANKM-RITVLERDIS----AV-------NLMRKYGYKVYYGDATQLELLRAAGAEKAE 466 (601)
T ss_pred cCCEEEec-CchHHHHHHHHHHhCCC-CEEEEECCHH----HH-------HHHHhCCCeEEEeeCCCHHHHHhcCCccCC
Confidence 46898887 99999999999999994 8999776542 10 111234678999999999988765 56789
Q ss_pred EEEEcc
Q 010005 87 TVFYVD 92 (520)
Q Consensus 87 ~Vih~a 92 (520)
+||-+.
T Consensus 467 ~vv~~~ 472 (601)
T PRK03659 467 AIVITC 472 (601)
T ss_pred EEEEEe
Confidence 888544
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.098 Score=48.82 Aligned_cols=28 Identities=32% Similarity=0.497 Sum_probs=23.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRV 38 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~ 38 (520)
|+|.| ||+|.||+.++++|.+.|| +|++
T Consensus 2 ~~~~i-~GtGniG~alA~~~a~ag~-eV~i 29 (211)
T COG2085 2 MIIAI-IGTGNIGSALALRLAKAGH-EVII 29 (211)
T ss_pred cEEEE-eccChHHHHHHHHHHhCCC-eEEE
Confidence 55655 6699999999999999996 7776
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.21 Score=52.79 Aligned_cols=32 Identities=28% Similarity=0.269 Sum_probs=28.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
|+|.|+||+|.+|+.+++.|.+.|+ +|+++|+
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r 32 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF-EVIVTGR 32 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 5899999999999999999999994 8999554
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.097 Score=57.29 Aligned_cols=70 Identities=17% Similarity=0.196 Sum_probs=51.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHH-HcCCCE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAST 87 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~-l~~~D~ 87 (520)
-+|+|.| .|-+|+++++.|.++|+ +|+++|.++. + .+...+.+.+.+.+|.+|++.++++ ++++|+
T Consensus 418 ~hiiI~G-~G~~G~~la~~L~~~g~-~vvvId~d~~--------~---~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~ 484 (558)
T PRK10669 418 NHALLVG-YGRVGSLLGEKLLAAGI-PLVVIETSRT--------R---VDELRERGIRAVLGNAANEEIMQLAHLDCARW 484 (558)
T ss_pred CCEEEEC-CChHHHHHHHHHHHCCC-CEEEEECCHH--------H---HHHHHHCCCeEEEcCCCCHHHHHhcCccccCE
Confidence 5788887 89999999999999995 8898775432 1 0111234688999999999877754 467887
Q ss_pred EEEc
Q 010005 88 VFYV 91 (520)
Q Consensus 88 Vih~ 91 (520)
|+=+
T Consensus 485 viv~ 488 (558)
T PRK10669 485 LLLT 488 (558)
T ss_pred EEEE
Confidence 7643
|
|
| >KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.39 Score=47.13 Aligned_cols=109 Identities=21% Similarity=0.237 Sum_probs=62.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCccc--ccCCCCCCCCCCCCCC----------CCCcEEEEecCCC--
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSL--QLDPSESNSLLPDSLS----------SGRAEYHQVDVRD-- 74 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~--~l~r~~~~~~l~~~~~----------~~~v~~~~~Dl~d-- 74 (520)
.=|+|.| .|-+|++++..|++.|...++++|.++-. .+.|..- ..+..... ..-.++.+.|-++
T Consensus 75 syVVVVG-~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~-Atl~DVG~PK~~clkkh~skiaPw~eIdar~~l 152 (430)
T KOG2018|consen 75 SYVVVVG-AGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSC-ATLADVGTPKVMCLKKHFSKIAPWCEIDARNML 152 (430)
T ss_pred cEEEEEe-cCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhh-hhHhhcCCchHHHHHHHHHhhCccceecHHHhh
Confidence 4567776 77799999999999998789999876510 0111110 00000000 0112233333322
Q ss_pred --HHHHHHHHc-CCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccccc
Q 010005 75 --ISQIKKVLE-GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (520)
Q Consensus 75 --~~~l~~~l~-~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vy 136 (520)
.+.=++++. ++|.|++|.- |++.-..|+++|..+|.+ .+||+++-
T Consensus 153 ~~~~s~edll~gnPdFvvDciD--------------NidtKVdLL~y~~~~~l~---Viss~Gaa 200 (430)
T KOG2018|consen 153 WTSSSEEDLLSGNPDFVVDCID--------------NIDTKVDLLEYCYNHGLK---VISSTGAA 200 (430)
T ss_pred cCCCchhhhhcCCCCeEeEhhh--------------hhhhhhHHHHHHHHcCCc---eEeccCcc
Confidence 122233333 4788887752 466667899999999986 34665553
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.62 Score=45.82 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=24.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRV 38 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~ 38 (520)
+||.|.|++|.+|+.+++.+.+....++++
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elva 31 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVA 31 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEE
Confidence 699999999999999999998753246554
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.5 Score=48.24 Aligned_cols=102 Identities=9% Similarity=0.043 Sum_probs=56.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEe-cCCcccc--cCC-CCCC--CCCCCC---CCCCCcEEEEecCCCHHHH
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT-DSTQSLQ--LDP-SESN--SLLPDS---LSSGRAEYHQVDVRDISQI 78 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~-D~~~~~~--l~r-~~~~--~~l~~~---~~~~~v~~~~~Dl~d~~~l 78 (520)
|+||.|.|. |-+|+.+++.+.+....+|+++ |...... +.. .... ...... ....++ .+.+ ..
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i-~V~~------~~ 72 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGI-PVAG------TI 72 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCce-EEcC------Ch
Confidence 479999998 9999999999887654566653 2211000 000 0000 000000 000011 1111 23
Q ss_pred HHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecc
Q 010005 79 KKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (520)
Q Consensus 79 ~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~ 133 (520)
.++++++|+||.+++... +...++.+.++| +++|+.|+.
T Consensus 73 ~el~~~vDVVIdaT~~~~---------------~~e~a~~~~~aG-k~VI~~~~~ 111 (341)
T PRK04207 73 EDLLEKADIVVDATPGGV---------------GAKNKELYEKAG-VKAIFQGGE 111 (341)
T ss_pred hHhhccCCEEEECCCchh---------------hHHHHHHHHHCC-CEEEEcCCC
Confidence 455678999999986422 234667888889 578887774
|
|
| >TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.23 Score=53.52 Aligned_cols=116 Identities=13% Similarity=0.120 Sum_probs=74.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcc-cccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS-LQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~-~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
..||+|.| .|-+|++++..|++.|..+++++|.+.- .++.|-......... ..+++.+...|..+.+.+.+++++.|
T Consensus 129 ~akVlVlG-~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~-~n~~v~v~~i~~~~~~dl~ev~~~~D 206 (637)
T TIGR03693 129 NAKILAAG-SGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEE-TDDALLVQEIDFAEDQHLHEAFEPAD 206 (637)
T ss_pred cccEEEEe-cCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHH-hCCCCceEeccCCcchhHHHhhcCCc
Confidence 46899998 7888999999999999777888765541 111111110000011 23566666667777888999999999
Q ss_pred EEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCC--EEEEeecccccc
Q 010005 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR--RLVYNSTADVVF 137 (520)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk--r~V~~SS~~vyg 137 (520)
.|++.+.. + +......+-++|.+.|.. -++..++....|
T Consensus 207 iVi~vsDd------y------~~~~Lr~lN~acvkegk~~IPai~~G~~~liG 247 (637)
T TIGR03693 207 WVLYVSDN------G------DIDDLHALHAFCKEEGKGFIPAICLKQVGLAG 247 (637)
T ss_pred EEEEECCC------C------ChHHHHHHHHHHHHcCCCeEEEEEcccceeec
Confidence 99999842 1 123345677889888832 344445544444
|
Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein. |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.35 Score=41.22 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=25.1
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCCcEEEEe
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~~~V~~~ 39 (520)
||.|+|++|.+|..+++.|.+..+.++.++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av 30 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVAL 30 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEE
Confidence 588999999999999999999643677764
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.21 Score=53.16 Aligned_cols=36 Identities=17% Similarity=0.130 Sum_probs=30.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcc
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQS 44 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~ 44 (520)
+|+|.|.| .|++|..++..|.+.|+ ++|+++|+...
T Consensus 1 ~m~I~ViG-~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 1 MVKICCIG-AGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 47899996 99999999999999853 48999988653
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=92.96 E-value=7 Score=38.88 Aligned_cols=91 Identities=13% Similarity=0.153 Sum_probs=58.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~-- 84 (520)
+..||+|-|-+|-+|+.+.+.|++.|...|+. +.+..... + ...+.-..++.++-+.
T Consensus 7 ~~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~p--------Vnp~~~~~-----------~--v~G~~~y~sv~dlp~~~~ 65 (291)
T PRK05678 7 KDTKVIVQGITGKQGTFHTEQMLAYGTNIVGG--------VTPGKGGT-----------T--VLGLPVFNTVAEAVEATG 65 (291)
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHCCCCEEEE--------ECCCCCCC-----------e--EeCeeccCCHHHHhhccC
Confidence 46799999999999999999999987324445 33331000 0 0122233445555555
Q ss_pred CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecc
Q 010005 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (520)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~ 133 (520)
+|.++-+.. ......+++.|.+.|+|..|.+|+-
T Consensus 66 ~DlAvi~vp---------------~~~v~~~l~e~~~~gvk~avI~s~G 99 (291)
T PRK05678 66 ANASVIYVP---------------PPFAADAILEAIDAGIDLIVCITEG 99 (291)
T ss_pred CCEEEEEcC---------------HHHHHHHHHHHHHCCCCEEEEECCC
Confidence 888875543 2234567888888999988877764
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.15 Score=48.47 Aligned_cols=32 Identities=31% Similarity=0.451 Sum_probs=28.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
|+|.|+||+|.+|+.++..|.+.| ++|.+.++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r 32 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG-NKIIIGSR 32 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEc
Confidence 589999999999999999999999 48988544
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.41 Score=48.07 Aligned_cols=32 Identities=25% Similarity=0.166 Sum_probs=28.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEe
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~ 39 (520)
.+.+++|+||+|.+|..+++.+.+.| ..|+++
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g-~~v~~~ 193 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALG-ARVIAV 193 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcC-CeEEEE
Confidence 35789999999999999999999999 588873
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.13 Score=51.98 Aligned_cols=75 Identities=17% Similarity=0.148 Sum_probs=57.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHH-HHHHHHcCCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS-QIKKVLEGAS 86 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~-~l~~~l~~~D 86 (520)
+++||+.| +||+.+-.+..|.+++.-+|++. .|... .-++.....+++.+..|+.|.+ .+++..+..|
T Consensus 2 ~~~vlllg-sg~v~~p~~d~ls~~~dv~vtva--------~~~~~--~~~~~~~~~~~~av~ldv~~~~~~L~~~v~~~D 70 (445)
T KOG0172|consen 2 KKGVLLLG-SGFVSRPVADFLSRKKDVNVTVA--------SRTLK--DAEALVKGINIKAVSLDVADEELALRKEVKPLD 70 (445)
T ss_pred CcceEEec-CccccchHHHHHhhcCCceEEEe--------hhhHH--HHHHHhcCCCccceEEEccchHHHHHhhhcccc
Confidence 57899998 99999999999999986678873 33322 1122233456889999999988 8899999999
Q ss_pred EEEEccc
Q 010005 87 TVFYVDA 93 (520)
Q Consensus 87 ~Vih~aa 93 (520)
.|+-+-.
T Consensus 71 ~viSLlP 77 (445)
T KOG0172|consen 71 LVISLLP 77 (445)
T ss_pred eeeeecc
Confidence 9996653
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.33 Score=48.02 Aligned_cols=101 Identities=13% Similarity=0.077 Sum_probs=64.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
.++++.|+|+.| +|+--++.-.+.| .+|++.|. +..+ ..+....-+.+.+..-..|++.+.++.+-.|
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKAMG-~rV~vis~--------~~~k--keea~~~LGAd~fv~~~~d~d~~~~~~~~~d 248 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKAMG-MRVTVIST--------SSKK--KEEAIKSLGADVFVDSTEDPDIMKAIMKTTD 248 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHHhC-cEEEEEeC--------Cchh--HHHHHHhcCcceeEEecCCHHHHHHHHHhhc
Confidence 468999999999 9999999888899 59999554 3211 1122223355666555558888877777666
Q ss_pred EEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecc
Q 010005 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (520)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~ 133 (520)
.++|....- ...+ ...+++.+|..| ++|+++-.
T Consensus 249 g~~~~v~~~-a~~~-----------~~~~~~~lk~~G--t~V~vg~p 281 (360)
T KOG0023|consen 249 GGIDTVSNL-AEHA-----------LEPLLGLLKVNG--TLVLVGLP 281 (360)
T ss_pred Ccceeeeec-cccc-----------hHHHHHHhhcCC--EEEEEeCc
Confidence 666665421 1111 123566676666 78877744
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=92.49 E-value=4.2 Score=43.22 Aligned_cols=88 Identities=19% Similarity=0.288 Sum_probs=57.2
Q ss_pred CCCeEEEEcCC---ChhHHHHHHHHHhcCCc--EEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHH
Q 010005 7 IPRTCVVLNGR---GFVGRSLVLRLLELGKC--IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 7 ~~~~ILVtGat---GfIG~~lv~~L~~~g~~--~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
..++|.|.|++ |-+|..+.+.|.+.| + .|+.+ .+... .. .+ +.-..++.++
T Consensus 6 ~p~siavvGaS~~~~~~g~~~~~~l~~~g-f~g~v~~V--------np~~~--~i------~G-------~~~~~sl~~l 61 (447)
T TIGR02717 6 NPKSVAVIGASRDPGKVGYAIMKNLIEGG-YKGKIYPV--------NPKAG--EI------LG-------VKAYPSVLEI 61 (447)
T ss_pred CCCEEEEEccCCCCCchHHHHHHHHHhCC-CCCcEEEE--------CCCCC--cc------CC-------ccccCCHHHC
Confidence 35899999998 678999999999988 4 57773 33321 00 01 1122233444
Q ss_pred HcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecc
Q 010005 82 LEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (520)
Q Consensus 82 l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~ 133 (520)
-+.+|.++-+.. ...+..+++.|.+.|++.+|.+|+-
T Consensus 62 p~~~Dlavi~vp---------------~~~~~~~l~e~~~~gv~~~vi~s~g 98 (447)
T TIGR02717 62 PDPVDLAVIVVP---------------AKYVPQVVEECGEKGVKGAVVITAG 98 (447)
T ss_pred CCCCCEEEEecC---------------HHHHHHHHHHHHhcCCCEEEEECCC
Confidence 356787775543 2334567888888999988887764
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.43 Score=46.89 Aligned_cols=113 Identities=12% Similarity=0.164 Sum_probs=72.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--C
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~ 84 (520)
...||++.| +|=+|..++-.+.+.|. +|+++|++.+ .+.-. ---.-+..|+.|.+++..+++ +
T Consensus 11 ~a~kvmLLG-SGELGKEvaIe~QRLG~-eViAVDrY~~---APAmq----------VAhrs~Vi~MlD~~al~avv~rek 75 (394)
T COG0027 11 QATKVMLLG-SGELGKEVAIEAQRLGV-EVIAVDRYAN---APAMQ----------VAHRSYVIDMLDGDALRAVVEREK 75 (394)
T ss_pred CCeEEEEec-CCccchHHHHHHHhcCC-EEEEecCcCC---Chhhh----------hhhheeeeeccCHHHHHHHHHhhC
Confidence 346899998 99999999999999994 9999888652 11111 012456789999999999996 5
Q ss_pred CCEEEEcccC-CC-------------CCcchhhHHhhhHHHHHHHHHHHHHCC--CCEEEEeeccccc
Q 010005 85 ASTVFYVDAT-DL-------------NTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVV 136 (520)
Q Consensus 85 ~D~Vih~aa~-~~-------------~~~~~~~~~~~Nv~gt~~ll~aa~~~g--vkr~V~~SS~~vy 136 (520)
+|+||--... .. -......-...|-++.++++ +.+.| ..++-|+.|...+
T Consensus 76 Pd~IVpEiEAI~td~L~elE~~G~~VVP~ArAt~ltMnRegiRrlA--AeeLglpTs~Y~fa~s~~e~ 141 (394)
T COG0027 76 PDYIVPEIEAIATDALVELEEEGYTVVPNARATKLTMNREGIRRLA--AEELGLPTSKYRFADSLEEL 141 (394)
T ss_pred CCeeeehhhhhhHHHHHHHHhCCceEccchHHHHhhhcHHHHHHHH--HHHhCCCCccccccccHHHH
Confidence 8888743211 00 00112233455666666654 34444 3466677665554
|
|
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.43 Score=50.56 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=50.1
Q ss_pred CCCCeEEEEcC----------------CChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEE
Q 010005 6 AIPRTCVVLNG----------------RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69 (520)
Q Consensus 6 ~~~~~ILVtGa----------------tGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~ 69 (520)
.++++||||+| ||-.|.+|++.+..+|. +|+. +..... +. ...+++.+.
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA-~Vtl--------I~Gp~~---~~---~p~~v~~i~ 318 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGA-EVTL--------ISGPVD---LA---DPQGVKVIH 318 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCC-cEEE--------EeCCcC---CC---CCCCceEEE
Confidence 56899999987 79999999999999995 8887 332211 11 123566654
Q ss_pred ecCCCHHHHHHHHc---CCCEEEEcccC
Q 010005 70 VDVRDISQIKKVLE---GASTVFYVDAT 94 (520)
Q Consensus 70 ~Dl~d~~~l~~~l~---~~D~Vih~aa~ 94 (520)
+ ...+++.++++ ..|++|+.||.
T Consensus 319 V--~ta~eM~~av~~~~~~Di~I~aAAV 344 (475)
T PRK13982 319 V--ESARQMLAAVEAALPADIAIFAAAV 344 (475)
T ss_pred e--cCHHHHHHHHHhhCCCCEEEEeccc
Confidence 4 34555555443 37999999998
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.4 Score=48.02 Aligned_cols=109 Identities=15% Similarity=0.110 Sum_probs=70.2
Q ss_pred EEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCC--CCCCCcEEEEecCCCHHHHHHHHcCCCEEE
Q 010005 13 VLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLEGASTVF 89 (520)
Q Consensus 13 VtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~--~~~~~v~~~~~Dl~d~~~l~~~l~~~D~Vi 89 (520)
|.| +|.||++++..|...+. .++..+|+... ...... ..+.+. ....++... + .| .+.++++|+||
T Consensus 1 iIG-aG~VG~~~a~~l~~~~l~~el~L~Di~~~--~~~g~a-~Dl~~~~~~~~~~~~i~-~--~~----~~~~~daDivV 69 (299)
T TIGR01771 1 IIG-AGNVGSSTAFALLNQGIADEIVLIDINKD--KAEGEA-MDLQHAASFLPTPKKIR-S--GD----YSDCKDADLVV 69 (299)
T ss_pred CCC-cCHHHHHHHHHHHhcCCCCEEEEEeCCCC--hhhHHH-HHHHHhhcccCCCeEEe-c--CC----HHHHCCCCEEE
Confidence 345 69999999999988774 36999887542 111111 011110 001122222 1 22 35778999999
Q ss_pred EcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEeec
Q 010005 90 YVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (520)
Q Consensus 90 h~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~SS 132 (520)
-.||. .....+.....+.|+.-.+.+.+.+++++.+ .++.+|.
T Consensus 70 itag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 114 (299)
T TIGR01771 70 ITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATN 114 (299)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 99998 3334567889999999999999999998733 4555553
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.41 Score=47.33 Aligned_cols=56 Identities=16% Similarity=0.221 Sum_probs=45.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
-.+++|+|+|+++.+|+.++..|.++| .+|++.+ +.. ..+.+.++++
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL~~~g-atVtv~~--------s~t------------------------~~l~~~~~~A 202 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLLLQKN-ASVTILH--------SRS------------------------KDMASYLKDA 202 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCC-CeEEEEe--------CCc------------------------hhHHHHHhhC
Confidence 357999999999999999999999999 5888832 210 2467788899
Q ss_pred CEEEEcccC
Q 010005 86 STVFYVDAT 94 (520)
Q Consensus 86 D~Vih~aa~ 94 (520)
|+||-..+.
T Consensus 203 DIVIsAvg~ 211 (286)
T PRK14175 203 DVIVSAVGK 211 (286)
T ss_pred CEEEECCCC
Confidence 999988875
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.44 Score=48.38 Aligned_cols=32 Identities=22% Similarity=0.039 Sum_probs=28.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEe
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~ 39 (520)
.+.+|+|+||+|-+|..+++.+...|. +|++.
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~ 182 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGC-YVVGS 182 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCC-EEEEE
Confidence 457999999999999999999999994 78873
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >TIGR01408 Ube1 ubiquitin-activating enzyme E1 | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.52 Score=54.76 Aligned_cols=110 Identities=12% Similarity=0.131 Sum_probs=68.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCC-----CC---------CCCCCCCCCCCcEEEEec
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSE-----SN---------SLLPDSLSSGRAEYHQVD 71 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~-----~~---------~~l~~~~~~~~v~~~~~D 71 (520)
..+|||.|. |-+|.++++.|...|..+++++|... ..++.|+- .- ..+.+....-.++.+..+
T Consensus 24 ~s~VLIiG~-gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~ 102 (1008)
T TIGR01408 24 KSNVLISGM-GGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNPYVHVSSSSVP 102 (1008)
T ss_pred hCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCCCceEEEeccc
Confidence 468999995 55999999999999987899988654 01122210 00 001111111123334444
Q ss_pred CCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCC--CCEEEEeeccccccc
Q 010005 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFD 138 (520)
Q Consensus 72 l~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g--vkr~V~~SS~~vyg~ 138 (520)
+. .+.++++|+||.+.. +. .....+-++|++.+ + .||+.++.+.||.
T Consensus 103 l~-----~e~l~~fdvVV~t~~------~~--------~~~~~in~~cr~~~~~I-~fI~~~~~G~~G~ 151 (1008)
T TIGR01408 103 FN-----EEFLDKFQCVVLTEM------SL--------PLQKEINDFCHSQCPPI-AFISADVRGLFGS 151 (1008)
T ss_pred CC-----HHHHcCCCEEEECCC------CH--------HHHHHHHHHHHHcCCCe-EEEEEeecceEEE
Confidence 42 346789999997532 22 22245678999999 5 7999999988873
|
This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.25 Score=46.41 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=28.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEe
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~ 39 (520)
.++++|+|.|| |-+|...++.|++.| .+|+++
T Consensus 8 l~~k~vLVIGg-G~va~~ka~~Ll~~g-a~V~VI 39 (202)
T PRK06718 8 LSNKRVVIVGG-GKVAGRRAITLLKYG-AHIVVI 39 (202)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCC-CeEEEE
Confidence 45789999995 999999999999999 488884
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.72 Score=42.69 Aligned_cols=78 Identities=21% Similarity=0.162 Sum_probs=52.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCC-HHHHHHHHc
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD-ISQIKKVLE 83 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d-~~~l~~~l~ 83 (520)
+..+++|+|.|-+..+|+-|+..|+++| .+|++.|+..-....+..+ .........| ..++.+.++
T Consensus 59 ~l~GK~vvVIGrS~iVGkPla~lL~~~~-AtVti~~~~~~~~~~~~~~------------~~hs~t~~~~~~~~l~~~~~ 125 (197)
T cd01079 59 RLYGKTITIINRSEVVGRPLAALLANDG-ARVYSVDINGIQVFTRGES------------IRHEKHHVTDEEAMTLDCLS 125 (197)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCC-CEEEEEecCcccccccccc------------cccccccccchhhHHHHHhh
Confidence 3568999999999999999999999999 5999976543211111110 1111111123 234678888
Q ss_pred CCCEEEEcccCC
Q 010005 84 GASTVFYVDATD 95 (520)
Q Consensus 84 ~~D~Vih~aa~~ 95 (520)
.+|+||-..|..
T Consensus 126 ~ADIVIsAvG~~ 137 (197)
T cd01079 126 QSDVVITGVPSP 137 (197)
T ss_pred hCCEEEEccCCC
Confidence 999999888763
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.32 Score=48.89 Aligned_cols=53 Identities=25% Similarity=0.268 Sum_probs=40.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCE
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~ 87 (520)
.|+|.|.| +|.+|+.++..|.+.|| +|++.| |+.. .++.++++++|+
T Consensus 4 ~m~I~iiG-~G~~G~~lA~~l~~~G~-~V~~~~--------r~~~-----------------------~~~~~~~~~adv 50 (308)
T PRK14619 4 PKTIAILG-AGAWGSTLAGLASANGH-RVRVWS--------RRSG-----------------------LSLAAVLADADV 50 (308)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCC-EEEEEe--------CCCC-----------------------CCHHHHHhcCCE
Confidence 57899997 89999999999999994 999844 3321 124566778999
Q ss_pred EEEccc
Q 010005 88 VFYVDA 93 (520)
Q Consensus 88 Vih~aa 93 (520)
||-+..
T Consensus 51 vi~~vp 56 (308)
T PRK14619 51 IVSAVS 56 (308)
T ss_pred EEEECC
Confidence 987663
|
|
| >TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.53 Score=48.75 Aligned_cols=67 Identities=15% Similarity=0.263 Sum_probs=49.2
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--CCCE
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAST 87 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~~D~ 87 (520)
||+|+| +|..|..+++.+.+.| +.|+++|.... .+. . .+ --..+..|..|.+.+.++.+ ++|+
T Consensus 1 kililG-~g~~~~~l~~aa~~~G-~~v~~~d~~~~-----~~~---~--~~---ad~~~~~~~~d~~~l~~~~~~~~id~ 65 (380)
T TIGR01142 1 RVLLLG-SGELGKEVAIEAQRLG-VEVIAVDRYAN-----APA---M--QV---AHRSYVINMLDGDALRAVIEREKPDY 65 (380)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcC-CEEEEEeCCCC-----Cch---h--hh---CceEEEcCCCCHHHHHHHHHHhCCCE
Confidence 689999 6999999999999999 58998665331 000 0 01 12456778899999988887 7999
Q ss_pred EEEc
Q 010005 88 VFYV 91 (520)
Q Consensus 88 Vih~ 91 (520)
|+-.
T Consensus 66 v~~~ 69 (380)
T TIGR01142 66 IVPE 69 (380)
T ss_pred EEec
Confidence 9854
|
This enzyme is an alternative to PurN (TIGR00639) |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.14 Score=51.12 Aligned_cols=69 Identities=17% Similarity=0.138 Sum_probs=46.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
.+++|+|+|. |-+|+.++..|.+.| .+|+++|+.. ...... ...+.+.+ +.+++.+.+.++|
T Consensus 151 ~g~kvlViG~-G~iG~~~a~~L~~~G-a~V~v~~r~~--------~~~~~~---~~~G~~~~-----~~~~l~~~l~~aD 212 (296)
T PRK08306 151 HGSNVLVLGF-GRTGMTLARTLKALG-ANVTVGARKS--------AHLARI---TEMGLSPF-----HLSELAEEVGKID 212 (296)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCC-CEEEEEECCH--------HHHHHH---HHcCCeee-----cHHHHHHHhCCCC
Confidence 4689999995 889999999999999 4999965542 210000 01122222 2345678888999
Q ss_pred EEEEccc
Q 010005 87 TVFYVDA 93 (520)
Q Consensus 87 ~Vih~aa 93 (520)
+||++..
T Consensus 213 iVI~t~p 219 (296)
T PRK08306 213 IIFNTIP 219 (296)
T ss_pred EEEECCC
Confidence 9999763
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.39 Score=49.45 Aligned_cols=33 Identities=21% Similarity=0.077 Sum_probs=29.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhc-CCcEEEEecC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDS 41 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~-g~~~V~~~D~ 41 (520)
.++|.|.|.+|.+|+.+++.|.+. | ++|+++|+
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~-~~V~g~D~ 37 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQ-LEVIGHDP 37 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCC-CEEEEEcC
Confidence 479999999999999999999976 6 68999664
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.41 Score=47.60 Aligned_cols=56 Identities=23% Similarity=0.320 Sum_probs=44.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
-.+++|.|.|.+|.+|+.++..|+++| ++|++.++ ... ++.++.+.+
T Consensus 157 l~Gk~V~vIG~s~ivG~PmA~~L~~~g-atVtv~~~--------~t~------------------------~l~e~~~~A 203 (301)
T PRK14194 157 LTGKHAVVIGRSNIVGKPMAALLLQAH-CSVTVVHS--------RST------------------------DAKALCRQA 203 (301)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCC-CEEEEECC--------CCC------------------------CHHHHHhcC
Confidence 357999999999999999999999999 59998432 210 356677789
Q ss_pred CEEEEcccC
Q 010005 86 STVFYVDAT 94 (520)
Q Consensus 86 D~Vih~aa~ 94 (520)
|+||-+.+.
T Consensus 204 DIVIsavg~ 212 (301)
T PRK14194 204 DIVVAAVGR 212 (301)
T ss_pred CEEEEecCC
Confidence 999988875
|
|
| >PF08732 HIM1: HIM1; InterPro: IPR014843 HIM1 (high induction of mutagenesis protein 1) plays a role in the control of spontaneous and induced mutagenesis [] | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.41 Score=48.66 Aligned_cols=75 Identities=13% Similarity=-0.017 Sum_probs=55.8
Q ss_pred hhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCCCCce
Q 010005 106 MIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLL 181 (520)
Q Consensus 106 ~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~ 181 (520)
.+..+-+..++++.. +.+.|++|.++|...- ......+|-..|...|+.+.....-.=-.
T Consensus 227 ~IDy~Lnl~laq~f~~~~~~~~~K~~vIvTSfn~~----------------~~s~~f~Yfk~K~~LE~dl~~~l~~~l~~ 290 (410)
T PF08732_consen 227 KIDYQLNLDLAQTFANDIKNTGNKKLVIVTSFNNN----------------AISSMFPYFKTKGELENDLQNLLPPKLKH 290 (410)
T ss_pred hccccccHHHHHHhhhhhccCCCceEEEEEecCcc----------------hhhhhhhhhHHHHHHHHHHHhhcccccce
Confidence 555556667777766 6788999999987542 22446799999999999998865421235
Q ss_pred EEEEecCccccCCCC
Q 010005 182 TCALRPSNVFGPGDT 196 (520)
Q Consensus 182 ~~ilRp~~vyGp~~~ 196 (520)
.+|||||.+.|...+
T Consensus 291 lvILRPGplvG~h~~ 305 (410)
T PF08732_consen 291 LVILRPGPLVGEHGS 305 (410)
T ss_pred EEEecCccccCCCCC
Confidence 899999999997653
|
It is thought to participate in the control of processing of mutational intermediates appearing during error-prone bypass of DNA damage. |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.15 Score=50.80 Aligned_cols=69 Identities=16% Similarity=0.133 Sum_probs=46.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
.+++|+|+|. |.+|+.+++.|.+.| .+|++.|+ ++.+ .... ...+...+ +.+.+.+.++++|
T Consensus 150 ~gk~v~IiG~-G~iG~avA~~L~~~G-~~V~v~~R--------~~~~--~~~~-~~~g~~~~-----~~~~l~~~l~~aD 211 (287)
T TIGR02853 150 HGSNVMVLGF-GRTGMTIARTFSALG-ARVFVGAR--------SSAD--LARI-TEMGLIPF-----PLNKLEEKVAEID 211 (287)
T ss_pred CCCEEEEEcC-hHHHHHHHHHHHHCC-CEEEEEeC--------CHHH--HHHH-HHCCCeee-----cHHHHHHHhccCC
Confidence 4689999995 889999999999999 49999554 3221 0000 00111111 2345677888999
Q ss_pred EEEEccc
Q 010005 87 TVFYVDA 93 (520)
Q Consensus 87 ~Vih~aa 93 (520)
+||++..
T Consensus 212 iVint~P 218 (287)
T TIGR02853 212 IVINTIP 218 (287)
T ss_pred EEEECCC
Confidence 9999763
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.44 Score=50.07 Aligned_cols=33 Identities=33% Similarity=0.424 Sum_probs=29.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~ 43 (520)
|+|.|.| .|++|..++..|.+.|| +|+++|+..
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G~-~V~~~d~~~ 33 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLGH-EVTGVDIDQ 33 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcCC-eEEEEECCH
Confidence 5799997 89999999999999995 999988754
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=92.01 E-value=2 Score=45.03 Aligned_cols=113 Identities=15% Similarity=0.058 Sum_probs=69.2
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCC-----cEEEEecCCc--ccccCCCCC--CCCC------------CCCCCCCCcEEE
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGK-----CIVRVTDSTQ--SLQLDPSES--NSLL------------PDSLSSGRAEYH 68 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~-----~~V~~~D~~~--~~~l~r~~~--~~~l------------~~~~~~~~v~~~ 68 (520)
+|+|.| +|-+|..+++.|...|. .+++++|.+. ..++.|+-- .... .+....-+++.+
T Consensus 1 kVlvVG-aGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~ 79 (435)
T cd01490 1 KVFLVG-AGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITAL 79 (435)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEE
Confidence 588998 88899999999999996 6899988765 112333210 0000 001111234445
Q ss_pred EecCCCH-H-HH-HHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccccccc
Q 010005 69 QVDVRDI-S-QI-KKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFD 138 (520)
Q Consensus 69 ~~Dl~d~-~-~l-~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~ 138 (520)
...+... + .+ .+.++++|+|+.+.- |+..-..+-+.|...++ .+|..++.+.+|.
T Consensus 80 ~~~v~~~~~~~~~~~f~~~~DvVi~alD--------------n~~aR~~vn~~C~~~~i-Pli~~gt~G~~G~ 137 (435)
T cd01490 80 QNRVGPETEHIFNDEFWEKLDGVANALD--------------NVDARMYVDRRCVYYRK-PLLESGTLGTKGN 137 (435)
T ss_pred ecccChhhhhhhhHHHhcCCCEEEECCC--------------CHHHHHHHHHHHHHhCC-CEEEEecccceeE
Confidence 5555321 1 11 345678899986642 23344567789999986 6888888877764
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=92.01 E-value=1.6 Score=43.31 Aligned_cols=80 Identities=15% Similarity=0.128 Sum_probs=51.6
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCC-----CCC---------CCCCCCCCCCcEEEEecCC
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSE-----SNS---------LLPDSLSSGRAEYHQVDVR 73 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~-----~~~---------~l~~~~~~~~v~~~~~Dl~ 73 (520)
||||.| .|-+|.++++.|...|..+++++|.+. ..++.|+- +-+ .+.+....-+++.+..++.
T Consensus 1 kVlVVG-aGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~ 79 (291)
T cd01488 1 KILVIG-AGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ 79 (291)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccC
Confidence 589998 888999999999999987899988764 11233321 000 0001111224556677776
Q ss_pred CHHHHHHHHcCCCEEEEcc
Q 010005 74 DISQIKKVLEGASTVFYVD 92 (520)
Q Consensus 74 d~~~l~~~l~~~D~Vih~a 92 (520)
+.+ .+.++++|+||.+.
T Consensus 80 ~~~--~~f~~~fdvVi~al 96 (291)
T cd01488 80 DKD--EEFYRQFNIIICGL 96 (291)
T ss_pred chh--HHHhcCCCEEEECC
Confidence 543 56788999999753
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=91.99 E-value=1.8 Score=35.28 Aligned_cols=86 Identities=15% Similarity=0.196 Sum_probs=60.9
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCEEE
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTVF 89 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~Vi 89 (520)
+|||.||...--..+-+.+.+.| .+... ..|... +-.....+...+.++|.||
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G-~~~~~--------hg~~~~------------------~~~~~~~l~~~i~~aD~VI 53 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYG-GKLIH--------HGRDGG------------------DEKKASRLPSKIKKADLVI 53 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcC-CEEEE--------EecCCC------------------CccchhHHHHhcCCCCEEE
Confidence 58999997777788888888889 47666 211111 1122345788889999999
Q ss_pred EcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccc
Q 010005 90 YVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135 (520)
Q Consensus 90 h~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~v 135 (520)
-+... ++-..+..+-+.|++.++ +++|+.+.++
T Consensus 54 v~t~~------------vsH~~~~~vk~~akk~~i-p~~~~~~~~~ 86 (97)
T PF10087_consen 54 VFTDY------------VSHNAMWKVKKAAKKYGI-PIIYSRSRGV 86 (97)
T ss_pred EEeCC------------cChHHHHHHHHHHHHcCC-cEEEECCCCH
Confidence 88754 234556778899999997 7888886654
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.29 Score=50.53 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=51.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
...+|+|+|+ |-+|...++.|...|. +|+++|+... |.. .+...+ + ..+..+..+.+.+.+.+.++|
T Consensus 166 ~~~~VlViGa-G~vG~~aa~~a~~lGa-~V~v~d~~~~----~~~---~l~~~~---g-~~v~~~~~~~~~l~~~l~~aD 232 (370)
T TIGR00518 166 EPGDVTIIGG-GVVGTNAAKMANGLGA-TVTILDINID----RLR---QLDAEF---G-GRIHTRYSNAYEIEDAVKRAD 232 (370)
T ss_pred CCceEEEEcC-CHHHHHHHHHHHHCCC-eEEEEECCHH----HHH---HHHHhc---C-ceeEeccCCHHHHHHHHccCC
Confidence 3567999985 9999999999999995 8999665421 000 000000 1 123345567788899999999
Q ss_pred EEEEcccC
Q 010005 87 TVFYVDAT 94 (520)
Q Consensus 87 ~Vih~aa~ 94 (520)
+||.++..
T Consensus 233 vVI~a~~~ 240 (370)
T TIGR00518 233 LLIGAVLI 240 (370)
T ss_pred EEEEcccc
Confidence 99998754
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.23 Score=45.98 Aligned_cols=33 Identities=30% Similarity=0.345 Sum_probs=26.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~ 43 (520)
|||.|.| .||+|-.++..|.+.| ++|+++|++.
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G-~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKG-HQVIGVDIDE 33 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTT-SEEEEE-S-H
T ss_pred CEEEEEC-CCcchHHHHHHHHhCC-CEEEEEeCCh
Confidence 7899996 9999999999999999 5999999875
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.63 Score=46.88 Aligned_cols=32 Identities=22% Similarity=-0.016 Sum_probs=27.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEe
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~ 39 (520)
++.+|||+||+|-+|..+++.+...|. +|++.
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~ 169 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGA 169 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEE
Confidence 457999999999999999999988994 88873
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.23 Score=50.02 Aligned_cols=71 Identities=14% Similarity=0.231 Sum_probs=47.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
.+++|+|.|+ |-+|..+++.|.+.|..+|+++| |++.+ ..+...+ +.. ..+.+++.+.+.++
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~--------r~~~ra~~la~~~---g~~-----~~~~~~~~~~l~~a 239 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGVAEITIAN--------RTYERAEELAKEL---GGN-----AVPLDELLELLNEA 239 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEe--------CCHHHHHHHHHHc---CCe-----EEeHHHHHHHHhcC
Confidence 4689999985 99999999999987755788844 44321 1111111 111 22334567778889
Q ss_pred CEEEEcccC
Q 010005 86 STVFYVDAT 94 (520)
Q Consensus 86 D~Vih~aa~ 94 (520)
|+||-+.+.
T Consensus 240 DvVi~at~~ 248 (311)
T cd05213 240 DVVISATGA 248 (311)
T ss_pred CEEEECCCC
Confidence 999988764
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PLN02775 Probable dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=91.45 E-value=4.8 Score=39.73 Aligned_cols=94 Identities=9% Similarity=-0.008 Sum_probs=54.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHH-HHH-cC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIK-KVL-EG 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~-~~l-~~ 84 (520)
+.++|+|.|++|-.|+.+++.+.+.+ .++++. +.+.+......-.+...+++. ....|.+++. ... +.
T Consensus 10 ~~i~V~V~Ga~G~MG~~~~~av~~~~-~~Lv~~-------~~~~~~~~~~~~~~~g~~v~~--~~~~dl~~~l~~~~~~~ 79 (286)
T PLN02775 10 SAIPIMVNGCTGKMGHAVAEAAVSAG-LQLVPV-------SFTGPAGVGVTVEVCGVEVRL--VGPSEREAVLSSVKAEY 79 (286)
T ss_pred CCCeEEEECCCChHHHHHHHHHhcCC-CEEEEE-------eccccccccccceeccceeee--ecCccHHHHHHHhhccC
Confidence 34799999999999999999999966 576552 222222111110011111222 1123333322 221 24
Q ss_pred CC-EEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCC
Q 010005 85 AS-TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR 125 (520)
Q Consensus 85 ~D-~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk 125 (520)
+| ++|.+..+ ..+...++.|.++|+.
T Consensus 80 ~~~VvIDFT~P---------------~a~~~~~~~~~~~g~~ 106 (286)
T PLN02775 80 PNLIVVDYTLP---------------DAVNDNAELYCKNGLP 106 (286)
T ss_pred CCEEEEECCCh---------------HHHHHHHHHHHHCCCC
Confidence 89 89988642 3345678899999984
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.41 E-value=0.54 Score=46.33 Aligned_cols=32 Identities=9% Similarity=0.060 Sum_probs=25.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhc-CCcEEEE
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRV 38 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~-g~~~V~~ 38 (520)
|+++||.|.| .|.||+.+++.|.+. ...+|.+
T Consensus 4 m~~irIGIIG-~G~IG~~~a~~L~~~~~~~el~a 36 (271)
T PRK13302 4 RPELRVAIAG-LGAIGKAIAQALDRGLPGLTLSA 36 (271)
T ss_pred CCeeEEEEEC-ccHHHHHHHHHHHhcCCCeEEEE
Confidence 5678999998 899999999999874 3246653
|
|
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.77 Score=50.32 Aligned_cols=70 Identities=19% Similarity=0.216 Sum_probs=51.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
+++|+|+|.| +|.+|+-+++...+.| ++|+++|.... .+. ... --..+.+|..|.+.+.++.+++
T Consensus 20 ~~~k~IgIIG-gGqlg~mla~aA~~lG-~~Vi~ld~~~~-----apa-----~~~---AD~~~v~~~~D~~~l~~~a~~~ 84 (577)
T PLN02948 20 VSETVVGVLG-GGQLGRMLCQAASQMG-IKVKVLDPLED-----CPA-----SSV---AARHVVGSFDDRAAVREFAKRC 84 (577)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEeCCCC-----Cch-----hhh---CceeeeCCCCCHHHHHHHHHHC
Confidence 4578999998 6799999999999999 69999765321 010 000 1235668899999998888889
Q ss_pred CEEEE
Q 010005 86 STVFY 90 (520)
Q Consensus 86 D~Vih 90 (520)
|+|..
T Consensus 85 dvIt~ 89 (577)
T PLN02948 85 DVLTV 89 (577)
T ss_pred CEEEE
Confidence 98743
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=91.29 E-value=0.26 Score=54.61 Aligned_cols=72 Identities=14% Similarity=0.117 Sum_probs=53.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHH-HcCCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAS 86 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~-l~~~D 86 (520)
.++|+|.| .|-+|+.+++.|.++| .+++++|.++. |- +..+..+...+.+|.+|++-++++ ++++|
T Consensus 400 ~~~vII~G-~Gr~G~~va~~L~~~g-~~vvvID~d~~----~v-------~~~~~~g~~v~~GDat~~~~L~~agi~~A~ 466 (621)
T PRK03562 400 QPRVIIAG-FGRFGQIVGRLLLSSG-VKMTVLDHDPD----HI-------ETLRKFGMKVFYGDATRMDLLESAGAAKAE 466 (621)
T ss_pred cCcEEEEe-cChHHHHHHHHHHhCC-CCEEEEECCHH----HH-------HHHHhcCCeEEEEeCCCHHHHHhcCCCcCC
Confidence 46899987 8999999999999999 58999776542 11 111224678999999999877753 45788
Q ss_pred EEEEcc
Q 010005 87 TVFYVD 92 (520)
Q Consensus 87 ~Vih~a 92 (520)
.||-+.
T Consensus 467 ~vvv~~ 472 (621)
T PRK03562 467 VLINAI 472 (621)
T ss_pred EEEEEe
Confidence 888544
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.9 Score=45.76 Aligned_cols=66 Identities=12% Similarity=0.116 Sum_probs=47.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
..+++|.|.| .|-||+.+++.|...| .+|+++|.. .... +++... ...+++.++++++
T Consensus 134 l~g~tvgIvG-~G~IG~~vA~~l~afG-~~V~~~~~~--------~~~~--------~~~~~~----~~~~~l~e~l~~a 191 (312)
T PRK15469 134 REDFTIGILG-AGVLGSKVAQSLQTWG-FPLRCWSRS--------RKSW--------PGVQSF----AGREELSAFLSQT 191 (312)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEeCC--------CCCC--------CCceee----cccccHHHHHhcC
Confidence 3568999998 9999999999999999 599996542 1100 111111 1244688999999
Q ss_pred CEEEEccc
Q 010005 86 STVFYVDA 93 (520)
Q Consensus 86 D~Vih~aa 93 (520)
|+|+.+..
T Consensus 192 Dvvv~~lP 199 (312)
T PRK15469 192 RVLINLLP 199 (312)
T ss_pred CEEEECCC
Confidence 99987765
|
|
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=91.06 E-value=1.8 Score=47.29 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~ 43 (520)
+..+|||.| .|-+|+++++.|...|..+++++|.+.
T Consensus 337 ~~~kVLIvG-aGGLGs~VA~~La~~GVg~ItlVD~D~ 372 (664)
T TIGR01381 337 SQLKVLLLG-AGTLGCNVARCLIGWGVRHITFVDNGK 372 (664)
T ss_pred hcCeEEEEC-CcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 357899998 788999999999999987899999765
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.90 E-value=0.37 Score=50.13 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~ 43 (520)
++|+|||||++..+|-++++.|.+.|+ +|+++|...
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~-~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGH-TVILADSLK 38 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 468999999999999999999999995 999977653
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.94 Score=40.78 Aligned_cols=56 Identities=21% Similarity=0.330 Sum_probs=41.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
-++|+|+|.|.++.+|+.++..|.++| ..|+..+.. . .++.+.++.+
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~-atVt~~h~~--------T------------------------~~l~~~~~~A 80 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKG-ATVTICHSK--------T------------------------KNLQEITRRA 80 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT--EEEEE-TT--------S------------------------SSHHHHHTTS
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCC-CeEEeccCC--------C------------------------Ccccceeeec
Confidence 467999999999999999999999999 588884321 0 2356777889
Q ss_pred CEEEEcccC
Q 010005 86 STVFYVDAT 94 (520)
Q Consensus 86 D~Vih~aa~ 94 (520)
|+||-.+|.
T Consensus 81 DIVVsa~G~ 89 (160)
T PF02882_consen 81 DIVVSAVGK 89 (160)
T ss_dssp SEEEE-SSS
T ss_pred cEEeeeecc
Confidence 999988876
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=90.71 E-value=1.2 Score=41.83 Aligned_cols=89 Identities=24% Similarity=0.185 Sum_probs=58.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
.++++|||.| .|-+|..-++.|++.|. +|++++ +.... .+.......+++++..+... ..++++
T Consensus 7 l~gk~vlVvG-gG~va~rk~~~Ll~~ga-~VtVvs--------p~~~~-~l~~l~~~~~i~~~~~~~~~-----~dl~~~ 70 (205)
T TIGR01470 7 LEGRAVLVVG-GGDVALRKARLLLKAGA-QLRVIA--------EELES-ELTLLAEQGGITWLARCFDA-----DILEGA 70 (205)
T ss_pred cCCCeEEEEC-cCHHHHHHHHHHHHCCC-EEEEEc--------CCCCH-HHHHHHHcCCEEEEeCCCCH-----HHhCCc
Confidence 3568999998 89999999999999994 888843 32221 12222223468888888753 236788
Q ss_pred CEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCC
Q 010005 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKV 124 (520)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gv 124 (520)
+.||-+.+ ++ +.| ..+...|++.|+
T Consensus 71 ~lVi~at~------d~----~ln----~~i~~~a~~~~i 95 (205)
T TIGR01470 71 FLVIAATD------DE----ELN----RRVAHAARARGV 95 (205)
T ss_pred EEEEECCC------CH----HHH----HHHHHHHHHcCC
Confidence 88873322 11 122 358888888875
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.61 E-value=0.25 Score=48.97 Aligned_cols=34 Identities=24% Similarity=0.478 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
++++++|+|+ |-+|+.++..|.+.|..+|+++++
T Consensus 122 ~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R 155 (278)
T PRK00258 122 KGKRILILGA-GGAARAVILPLLDLGVAEITIVNR 155 (278)
T ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeC
Confidence 4689999996 999999999999999558999544
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=90.48 E-value=0.57 Score=49.37 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=29.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~ 43 (520)
.+|+|.|.| .|++|..++..|.+ | ++|+++|+..
T Consensus 5 ~~mkI~vIG-lGyvGlpmA~~la~-~-~~V~g~D~~~ 38 (425)
T PRK15182 5 DEVKIAIIG-LGYVGLPLAVEFGK-S-RQVVGFDVNK 38 (425)
T ss_pred CCCeEEEEC-cCcchHHHHHHHhc-C-CEEEEEeCCH
Confidence 358999997 89999999999766 7 6999988765
|
|
| >TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein | Back alignment and domain information |
|---|
Probab=90.43 E-value=0.86 Score=46.70 Aligned_cols=64 Identities=27% Similarity=0.337 Sum_probs=47.3
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCEE
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~V 88 (520)
+|+|.|| |.+|..+++.+.+.| ++|+++|.... .+. ... --+.+.+|..|.+.+.++.+.+|+|
T Consensus 1 ~igiiG~-gql~~~l~~aa~~lG-~~v~~~d~~~~-----~p~-----~~~---ad~~~~~~~~d~~~i~~~a~~~dvi 64 (352)
T TIGR01161 1 TVGILGG-GQLGRMLALAARPLG-IKVHVLDPDAN-----SPA-----VQV---ADHVVLAPFFDPAAIRELAESCDVI 64 (352)
T ss_pred CEEEECC-CHHHHHHHHHHHHcC-CEEEEECCCCC-----CCh-----hHh---CceeEeCCCCCHHHHHHHHhhCCEE
Confidence 4889996 899999999999999 69999664321 011 000 1235578999999999999999976
|
Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. |
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.43 E-value=3.7 Score=43.52 Aligned_cols=125 Identities=12% Similarity=0.039 Sum_probs=70.9
Q ss_pred CeEE----EEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 9 RTCV----VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 9 ~~IL----VtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
.++| |+||+|-+|..+++.|...| .+|++ ..+.+.+. ......++.-+..|.+..+..+++
T Consensus 35 ~~~~~~~~l~~~~~g~~~~~~~~~~~~g-~~v~~--------~~~~~~~~---~~~~~~~~~~~~~d~~~~~~~~~l--- 99 (450)
T PRK08261 35 QPLLDGPVLVGGAGRLAEALAALLAGLG-YDVVA--------NNDGGLTW---AAGWGDRFGALVFDATGITDPADL--- 99 (450)
T ss_pred CCCCCCceEEccCchhHHHHHHHHhhCC-Ceeee--------cCcccccc---ccCcCCcccEEEEECCCCCCHHHH---
Confidence 3556 88899999999999999999 58887 33332210 111122333333444332211111
Q ss_pred CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHH
Q 010005 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (520)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK 164 (520)
.. -.......++.... ..|+|+++|.... .....|+.+|
T Consensus 100 --------------------~~-~~~~~~~~l~~l~~--~griv~i~s~~~~------------------~~~~~~~~ak 138 (450)
T PRK08261 100 --------------------KA-LYEFFHPVLRSLAP--CGRVVVLGRPPEA------------------AADPAAAAAQ 138 (450)
T ss_pred --------------------HH-HHHHHHHHHHhccC--CCEEEEEcccccc------------------CCchHHHHHH
Confidence 00 01112222222222 2489999987552 0112589999
Q ss_pred HHHHHHHHHhcCC--CCceEEEEecCc
Q 010005 165 AQAEALVLFANNI--DGLLTCALRPSN 189 (520)
Q Consensus 165 ~~~E~~~~~~~~~--~gi~~~ilRp~~ 189 (520)
...+.+.+.++.+ .++.+..+.|+.
T Consensus 139 aal~gl~rsla~E~~~gi~v~~i~~~~ 165 (450)
T PRK08261 139 RALEGFTRSLGKELRRGATAQLVYVAP 165 (450)
T ss_pred HHHHHHHHHHHHHhhcCCEEEEEecCC
Confidence 9999998877655 467777777653
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.66 Score=45.58 Aligned_cols=32 Identities=9% Similarity=0.016 Sum_probs=24.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcC-CcE-EEEec
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELG-KCI-VRVTD 40 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g-~~~-V~~~D 40 (520)
||||.|.| .|.+|+.+++.|.+.+ ..+ +.++|
T Consensus 1 mmrIgIIG-~G~iG~~ia~~l~~~~~~~elv~v~d 34 (265)
T PRK13304 1 MLKIGIVG-CGAIASLITKAILSGRINAELYAFYD 34 (265)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHcCCCCeEEEEEEC
Confidence 37999999 6999999999998863 234 44544
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.83 Score=45.47 Aligned_cols=56 Identities=16% Similarity=0.222 Sum_probs=44.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
.++++|+|.|.+|.+|..++..|+++| ++|++.+ .|+. .+.++.+.+
T Consensus 156 ~~Gk~V~viGrs~~mG~PmA~~L~~~g-~tVtv~~-------~rT~-------------------------~l~e~~~~A 202 (296)
T PRK14188 156 LSGLNAVVIGRSNLVGKPMAQLLLAAN-ATVTIAH-------SRTR-------------------------DLPAVCRRA 202 (296)
T ss_pred CCCCEEEEEcCCcchHHHHHHHHHhCC-CEEEEEC-------CCCC-------------------------CHHHHHhcC
Confidence 457999999999999999999999999 5999842 1221 135667789
Q ss_pred CEEEEcccC
Q 010005 86 STVFYVDAT 94 (520)
Q Consensus 86 D~Vih~aa~ 94 (520)
|+||-+.+.
T Consensus 203 DIVIsavg~ 211 (296)
T PRK14188 203 DILVAAVGR 211 (296)
T ss_pred CEEEEecCC
Confidence 999987764
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.13 E-value=0.33 Score=47.92 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=25.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEec
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD 40 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D 40 (520)
++++|+|.| .|.+|+.+++.|.++| +.|.+++
T Consensus 2 ~~~~v~IvG-~GliG~s~a~~l~~~g-~~v~i~g 33 (279)
T COG0287 2 ASMKVGIVG-LGLMGGSLARALKEAG-LVVRIIG 33 (279)
T ss_pred CCcEEEEEC-CchHHHHHHHHHHHcC-CeEEEEe
Confidence 346777766 9999999999999999 5776643
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=89.99 E-value=0.36 Score=50.90 Aligned_cols=72 Identities=15% Similarity=0.247 Sum_probs=47.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
..+++|+|.|+ |-+|..+++.|...|..+|++.|+ +..+. .+...+ +. +..+.+++.+.+.+
T Consensus 180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r--------~~~ra~~la~~~---g~-----~~~~~~~~~~~l~~ 242 (423)
T PRK00045 180 LSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANR--------TLERAEELAEEF---GG-----EAIPLDELPEALAE 242 (423)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeC--------CHHHHHHHHHHc---CC-----cEeeHHHHHHHhcc
Confidence 35689999984 999999999999999557888544 33210 111111 11 22233556677889
Q ss_pred CCEEEEcccC
Q 010005 85 ASTVFYVDAT 94 (520)
Q Consensus 85 ~D~Vih~aa~ 94 (520)
+|+||.+.+.
T Consensus 243 aDvVI~aT~s 252 (423)
T PRK00045 243 ADIVISSTGA 252 (423)
T ss_pred CCEEEECCCC
Confidence 9999988764
|
|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=89.89 E-value=0.87 Score=47.37 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=50.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHH-HcCCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAS 86 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~-l~~~D 86 (520)
+.+++|.| .|-+|+.+++.|.++|+ +|+++|.+. . +.....+...+.||.+|++.++++ +++++
T Consensus 240 k~HvII~G-~g~lg~~v~~~L~~~g~-~vvVId~d~--------~-----~~~~~~g~~vI~GD~td~e~L~~AgI~~A~ 304 (393)
T PRK10537 240 KDHFIICG-HSPLAINTYLGLRQRGQ-AVTVIVPLG--------L-----EHRLPDDADLIPGDSSDSAVLKKAGAARAR 304 (393)
T ss_pred CCeEEEEC-CChHHHHHHHHHHHCCC-CEEEEECch--------h-----hhhccCCCcEEEeCCCCHHHHHhcCcccCC
Confidence 35799988 78899999999999994 777755321 1 111223578999999999888765 56789
Q ss_pred EEEEcc
Q 010005 87 TVFYVD 92 (520)
Q Consensus 87 ~Vih~a 92 (520)
+||=+.
T Consensus 305 aVI~~t 310 (393)
T PRK10537 305 AILALR 310 (393)
T ss_pred EEEEcC
Confidence 888444
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.78 E-value=0.26 Score=49.57 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=29.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDST 42 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~ 42 (520)
++.++|.|.| .|-+|..++..|.+.|+ .+|+++|+.
T Consensus 4 ~~~~~I~IIG-~G~mG~sla~~l~~~g~~~~V~~~dr~ 40 (307)
T PRK07502 4 PLFDRVALIG-IGLIGSSLARAIRRLGLAGEIVGADRS 40 (307)
T ss_pred cCCcEEEEEe-eCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 3467999998 99999999999999984 378886553
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=89.76 E-value=0.69 Score=43.37 Aligned_cols=36 Identities=33% Similarity=0.289 Sum_probs=30.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCC
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~ 42 (520)
+.++|+|+|+|. |-+|+++++.|.+.|+ +|++.|+.
T Consensus 25 ~l~gk~v~I~G~-G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGL-GKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 456789999995 7999999999999995 99896654
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=89.67 E-value=1.1 Score=45.31 Aligned_cols=31 Identities=26% Similarity=0.022 Sum_probs=26.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEe
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~ 39 (520)
.+|||+||+|-+|..+++.+...|..+|++.
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~ 186 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGI 186 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEE
Confidence 7999999999999999999888993268873
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=89.62 E-value=1.8 Score=43.30 Aligned_cols=98 Identities=17% Similarity=0.108 Sum_probs=57.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHH---HHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIK---KVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~---~~l~ 83 (520)
.+.+++|+|++|-+|..+++.+...| .+|++.+. +..+...... .+.. ...|..+.+... +...
T Consensus 166 ~~~~vlI~g~~~~iG~~~~~~~~~~g-~~v~~~~~--------~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~ 232 (342)
T cd08266 166 PGETVLVHGAGSGVGSAAIQIAKLFG-ATVIATAG--------SEDKLERAKE---LGAD-YVIDYRKEDFVREVRELTG 232 (342)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcC-CEEEEEeC--------CHHHHHHHHH---cCCC-eEEecCChHHHHHHHHHhC
Confidence 35789999999999999999999999 58887443 2221000000 0111 123454443323 3232
Q ss_pred --CCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccc
Q 010005 84 --GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (520)
Q Consensus 84 --~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~ 134 (520)
++|.++++++.. .....++..+..| +++.+|+..
T Consensus 233 ~~~~d~~i~~~g~~---------------~~~~~~~~l~~~G--~~v~~~~~~ 268 (342)
T cd08266 233 KRGVDVVVEHVGAA---------------TWEKSLKSLARGG--RLVTCGATT 268 (342)
T ss_pred CCCCcEEEECCcHH---------------HHHHHHHHhhcCC--EEEEEecCC
Confidence 589999998631 1123445555444 788887654
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.58 E-value=1.3 Score=44.08 Aligned_cols=99 Identities=12% Similarity=0.151 Sum_probs=56.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEE-EecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHH--Hc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVR-VTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV--LE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~-~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~--l~ 83 (520)
++.+|.|.| +|.||+.++..+.+....++. ++|++ ++...+.. -...++.... .+.+.+.+. ++
T Consensus 3 ~klrVAIIG-tG~IGt~hm~~l~~~~~velvAVvdid--------~es~gla~-A~~~Gi~~~~---~~ie~LL~~~~~~ 69 (302)
T PRK08300 3 SKLKVAIIG-SGNIGTDLMIKILRSEHLEPGAMVGID--------PESDGLAR-ARRLGVATSA---EGIDGLLAMPEFD 69 (302)
T ss_pred CCCeEEEEc-CcHHHHHHHHHHhcCCCcEEEEEEeCC--------hhhHHHHH-HHHcCCCccc---CCHHHHHhCcCCC
Confidence 457999999 999999988888875434655 43332 21100000 0011222222 233333322 35
Q ss_pred CCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccc
Q 010005 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (520)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~ 134 (520)
++|+||.+.+. .........+.++|+ ++|-.|++.
T Consensus 70 dIDiVf~AT~a---------------~~H~e~a~~a~eaGk-~VID~sPA~ 104 (302)
T PRK08300 70 DIDIVFDATSA---------------GAHVRHAAKLREAGI-RAIDLTPAA 104 (302)
T ss_pred CCCEEEECCCH---------------HHHHHHHHHHHHcCC-eEEECCccc
Confidence 68999988752 122456777788885 677777666
|
|
| >PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional | Back alignment and domain information |
|---|
Probab=89.58 E-value=1.6 Score=45.13 Aligned_cols=31 Identities=13% Similarity=-0.011 Sum_probs=25.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcC--CcEEEE
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELG--KCIVRV 38 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g--~~~V~~ 38 (520)
|.+||.|-|. |-||+.+.+.|.+++ ..+|++
T Consensus 59 ~~~kVaInGf-GrIGR~vlr~l~~~~~~~~evva 91 (395)
T PLN03096 59 AKIKVAINGF-GRIGRNFLRCWHGRKDSPLDVVA 91 (395)
T ss_pred cccEEEEECc-CHHHHHHHHHHHhCCCCCeEEEE
Confidence 3479999998 999999999999873 246664
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.50 E-value=0.96 Score=48.48 Aligned_cols=75 Identities=23% Similarity=0.130 Sum_probs=48.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
++++|+|.| .|.+|..+++.|.++| .+|+++|.... .+. ....+.+...+++++.++-.+ ...++|
T Consensus 15 ~~~~v~viG-~G~~G~~~A~~L~~~G-~~V~~~d~~~~---~~~---~~~~~~l~~~gv~~~~~~~~~------~~~~~D 80 (480)
T PRK01438 15 QGLRVVVAG-LGVSGFAAADALLELG-ARVTVVDDGDD---ERH---RALAAILEALGATVRLGPGPT------LPEDTD 80 (480)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEeCCch---hhh---HHHHHHHHHcCCEEEECCCcc------ccCCCC
Confidence 467999999 5889999999999999 59999775421 000 011112233466666554322 235689
Q ss_pred EEEEcccCC
Q 010005 87 TVFYVDATD 95 (520)
Q Consensus 87 ~Vih~aa~~ 95 (520)
.||...|..
T Consensus 81 ~Vv~s~Gi~ 89 (480)
T PRK01438 81 LVVTSPGWR 89 (480)
T ss_pred EEEECCCcC
Confidence 999887763
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=89.48 E-value=0.98 Score=43.55 Aligned_cols=33 Identities=33% Similarity=0.265 Sum_probs=28.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
++.+|+|+|++| +|..+++.+...| .+|++++.
T Consensus 134 ~~~~vli~g~~~-~G~~~~~~a~~~g-~~v~~~~~ 166 (271)
T cd05188 134 PGDTVLVLGAGG-VGLLAAQLAKAAG-ARVIVTDR 166 (271)
T ss_pred CCCEEEEECCCH-HHHHHHHHHHHcC-CeEEEEcC
Confidence 457999999999 9999999999999 58888443
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.48 E-value=1.2 Score=47.36 Aligned_cols=75 Identities=16% Similarity=0.187 Sum_probs=48.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCE
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~ 87 (520)
+++|+|.| .|-.|..+++.|.++| ++|++.|..... ... .....+...++.++.++-. + +.+.++|.
T Consensus 14 ~~~i~v~G-~G~sG~a~a~~L~~~G-~~V~~~D~~~~~---~~~---~~~~~l~~~gi~~~~~~~~-~----~~~~~~dl 80 (458)
T PRK01710 14 NKKVAVVG-IGVSNIPLIKFLVKLG-AKVTAFDKKSEE---ELG---EVSNELKELGVKLVLGENY-L----DKLDGFDV 80 (458)
T ss_pred CCeEEEEc-ccHHHHHHHHHHHHCC-CEEEEECCCCCc---cch---HHHHHHHhCCCEEEeCCCC-h----HHhccCCE
Confidence 57899987 8889999999999999 699998764310 000 0001122235666655432 2 22467999
Q ss_pred EEEcccCC
Q 010005 88 VFYVDATD 95 (520)
Q Consensus 88 Vih~aa~~ 95 (520)
||...|..
T Consensus 81 VV~Spgi~ 88 (458)
T PRK01710 81 IFKTPSMR 88 (458)
T ss_pred EEECCCCC
Confidence 99987764
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.38 E-value=0.53 Score=48.93 Aligned_cols=33 Identities=24% Similarity=0.163 Sum_probs=27.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcc
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~ 44 (520)
|+|.|.| .|++|..++..|. .| ++|+++|++..
T Consensus 1 mkI~VIG-lGyvGl~~A~~lA-~G-~~VigvD~d~~ 33 (388)
T PRK15057 1 MKITISG-TGYVGLSNGLLIA-QN-HEVVALDILPS 33 (388)
T ss_pred CEEEEEC-CCHHHHHHHHHHH-hC-CcEEEEECCHH
Confidence 4799996 9999999996655 58 59999888653
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=89.35 E-value=1.2 Score=44.59 Aligned_cols=32 Identities=25% Similarity=0.022 Sum_probs=28.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEe
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~ 39 (520)
++.+|||+||+|-+|..+++.+...|. +|++.
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~ 174 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGC 174 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCC-EEEEE
Confidence 457999999999999999999999994 78873
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 520 | ||||
| 3icp_A | 312 | Crystal Structure Of Udp-Galactose 4-Epimerase Leng | 7e-08 | ||
| 3aw9_A | 308 | Structure Of Udp-Galactose 4-Epimerase Mutant Lengt | 5e-07 | ||
| 1sb8_A | 352 | Crystal Structure Of Pseudomonas Aeruginosa Udp-N-A | 1e-06 | ||
| 2c29_D | 337 | Structure Of Dihydroflavonol Reductase From Vitis V | 6e-06 | ||
| 1bxk_A | 355 | Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = | 8e-06 | ||
| 3ru9_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 2e-04 | ||
| 3ru7_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 2e-04 | ||
| 3ruc_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 3e-04 | ||
| 3lu1_A | 364 | Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4- | 3e-04 | ||
| 1g1a_A | 361 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 7e-04 |
| >pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Length = 312 | Back alignment and structure |
|
| >pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant Length = 308 | Back alignment and structure |
|
| >pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Udp-N-Acetylglucosamine 4- Epimerase Complexed With Udp-N-Acetylgalactosamine Length = 352 | Back alignment and structure |
|
| >pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera At 1.8 A. Length = 337 | Back alignment and structure |
|
| >pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = 355 | Back alignment and structure |
|
| >pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4-Epimerase Length = 364 | Back alignment and structure |
|
| >pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb)from Salmonella Enterica Serovar Typhimurium Length = 361 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 187 bits (476), Expect = 6e-55
Identities = 46/346 (13%), Positives = 93/346 (26%), Gaps = 43/346 (12%)
Query: 18 GFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD 74
G +G + G I R + Q L E ++ D
Sbjct: 23 GLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLE---------------PECRVAEMLD 67
Query: 75 ISQIKKVLEGASTVFYVDA-TDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133
+ +++ L G V + + + AC + +V R++Y +A
Sbjct: 68 HAGLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSA 127
Query: 134 DVVFDGSHDIHNGDETLTCCWKFQDLMCDL----KAQAEALVLFANNIDGLLTCALRPSN 189
+ G E + K + +GL P
Sbjct: 128 YAMPRH-PQGLPGHE--GLFYDSLPSGKSSYVLCKWALDEQAREQAR-NGLPVVIGIPGM 183
Query: 190 VFGPGDTQLVPL-LVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSV 248
V G D ++ G + N + A E
Sbjct: 184 VLGELDIGPTTGRVITAIGNGEMTHYVAGQRN---VIDAAEAGRGLLMALER------GR 234
Query: 249 AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYN 308
G + +T ++ D I E LG P + + + + +
Sbjct: 235 IGERYLLTG-HNLEMADLTRRIAELLGQPAP-QPMSMAMAR----ALATLGRLRYRVSGQ 288
Query: 309 HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
L +++ + + D A++ +G+ +L++ + I F
Sbjct: 289 LPLLDETAIEVMAGGQFLDGRKAREELGFFSTTALDDTLLRAIDWF 334
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227 | Back alignment and structure |
|---|
Score = 97.1 bits (242), Expect = 4e-23
Identities = 40/239 (16%), Positives = 76/239 (31%), Gaps = 47/239 (19%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAE 66
V++ GFVG +L+ L G +VR P + +
Sbjct: 6 KIVLIGASGFVGSALLNEALNRGFEVTAVVR----------HPEKIKIENE------HLK 49
Query: 67 YHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRR 126
+ DV + ++ +V +GA V N D Y+ ++ ++ ++ V R
Sbjct: 50 VKKADVSSLDEVCEVCKGADAVISAFNPGWNNPDIYD---ETIKVYLTIIDGVKKAGVNR 106
Query: 127 LVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALR 186
+ A GS I G + ++++ +KA E + F +
Sbjct: 107 FLMVGGA-----GSLFIAPGLRLMDSGEVPENILPGVKALGEFYLNFLMKEKEIDWVFFS 161
Query: 187 PSNVFGPGD------TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239
P+ PG ++V++ VE+ A A + E
Sbjct: 162 PAADMRPGVRTGRYRLGKDDMIVDIVGNSH--------------ISVEDYAAAMIDELE 206
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 2e-21
Identities = 69/392 (17%), Positives = 124/392 (31%), Gaps = 100/392 (25%)
Query: 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD--STQSLQLDPSESNSLLPD 58
M + +V+ G GFVG +LV RLLELG V V D + N +PD
Sbjct: 25 MNASKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEK------IN--VPD 76
Query: 59 SLSSGRAEYHQVDVRDISQIKKVLEGASTVF----------YVD--ATDLNTDDFYNCYM 106
+ + + D + + + + VF + D +
Sbjct: 77 H---PAVRFSETSITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENN------- 126
Query: 107 IIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC-DL- 163
+ + K ++++VY++ + + + D E + +
Sbjct: 127 --TLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMS 184
Query: 164 KAQAEALVLFANNIDGLLTCALRPSNVFGP---------------GDTQLVPLLVNLAKP 208
K E ++ + L T R NV+GP + P + A
Sbjct: 185 KIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALK 244
Query: 209 GWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLS 268
G + G DF +VE+VA+ + A G + N+
Sbjct: 245 GMPLPLENGGVATRDFIFVEDVANGLIACAAD------GTPGGVY---NI---------- 285
Query: 269 IILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRT----- 323
+G I L I+E G + + +L R
Sbjct: 286 ----A-----------SGKETSIADLATKINEITG--------NNTELDRLPKRPWDNSG 322
Query: 324 -RTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
R A++ +G+S VS+++G+ TI+
Sbjct: 323 KRFGSPEKARRELGFSADVSIDDGLRKTIEWT 354
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 5e-21
Identities = 68/378 (17%), Positives = 112/378 (29%), Gaps = 92/378 (24%)
Query: 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD--ST-QSLQLDPSESNSLLPDSLSSGR 64
P+ ++ GF+G +L+ LL+L V D +T LD S
Sbjct: 27 PKVWLITGVAGFIGSNLLETLLKLD-QKVVGLDNFATGHQRNLDEVRSLVSEKQW---SN 82
Query: 65 AEYHQVDVRDISQIKKVLEGASTVFY--------------VDATDLNTDDFYNCYMIIVQ 110
++ Q D+R++ G V + + + N +
Sbjct: 83 FKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATN-----------ID 131
Query: 111 GAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL------- 163
G N++ A R+ KV+ Y +++ G H E
Sbjct: 132 GFLNMLIAARDAKVQSFTYAASSSTY--GDHPGLPKVED----------TIGKPLSPYAV 179
Query: 164 -KAQAEALVLFANNIDGLLTCALRPSNVFGP-GDTQL-----VPLLVNLAKPGWTKFIIG 216
K E + G T LR NVFG D +P + G +I G
Sbjct: 180 TKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYING 239
Query: 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGY 276
GE DF Y+EN A++ AA A + I + +GL
Sbjct: 240 DGETSRDFCYIENTVQANLLAATAGL----DARNQVYNIAVGGRTSLNQLFFALRDGLAE 295
Query: 277 QRPFIKLPTGVVWYIILLVKWIHEKLG--LRTYNHSLSACYIVQLASRTRTFDCIAAQKH 334
+ + G + A ++ A K
Sbjct: 296 NGVSYHRE----------PVYRDFREGDVRHSL------------ADISK------AAKL 327
Query: 335 IGYSPVVSLEEGVSSTIQ 352
+GY+P + GV+ +
Sbjct: 328 LGYAPKYDVSAGVALAMP 345
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 2e-20
Identities = 46/370 (12%), Positives = 90/370 (24%), Gaps = 107/370 (28%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGR----AEYHQVD 71
G GF+G+ +V + G + + + EY D
Sbjct: 10 GTGFLGQYVVESIKNDGNTPIIL-------------------TRSIGNKAINDYEYRVSD 50
Query: 72 VRDISQIKKVLEGASTVFY----------VDATDLNTDDFYNCYMIIVQGAKNVVTACRE 121
I + L V + + N +N+ AC E
Sbjct: 51 YTLEDLINQ-LNDVDAVVHLAATRGSQGKISEFHDN-----------EILTQNLYDACYE 98
Query: 122 CKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL--------KAQAEALVLF 173
+ +VY ST +E L K E +
Sbjct: 99 NNISNIVYASTISAY--SDETSLPWNEK----------ELPLPDLMYGVSKLACEHIGNI 146
Query: 174 ANNIDGLLTCALRPSNVFGP-GDTQLV-PLLVNLAKPGWTKFIIGSGENMSDFTYVENVA 231
+ GL LR ++++G + A G + + +F Y ++ A
Sbjct: 147 YSRKKGLCIKNLRFAHLYGFNEKNNYMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAA 206
Query: 232 HAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYI 291
+ + A + F I + + + ++ + I G + +
Sbjct: 207 KSVIYALKQ------EKVSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNP------ 254
Query: 292 ILLVKWIHEKLG--LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSS 349
+Y D A++ + +S + V
Sbjct: 255 --------NANEGIHSSY------------------MDSSKAKELLDFSTDYNFATAVEE 288
Query: 350 TIQSFSHLAR 359
L
Sbjct: 289 IHLLMRGLDD 298
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 4e-20
Identities = 58/365 (15%), Positives = 100/365 (27%), Gaps = 92/365 (25%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G +G LV L E + D + ++ G ++ +DV +
Sbjct: 7 SSGQIGTELVPYLAEKYGKKNVIAS-------DIVQRDT--------GGIKFITLDVSNR 51
Query: 76 SQIKKVLE--GASTVFY----VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129
+I + +E +F+ + A D Y + + G N++ A ++ +V ++V
Sbjct: 52 DEIDRAVEKYSIDAIFHLAGILSAKGE--KDPALAYKVNMNGTYNILEAAKQHRVEKVVI 109
Query: 130 NSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL---------KAQAEALVLFANNIDGL 180
ST V F + K AE L + GL
Sbjct: 110 PSTIGV-FGPETPKNKVPSI-----------TITRPRTMFGVTKIAAELLGQYYYEKFGL 157
Query: 181 LTCALRPSNVFGP------GDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234
+LR + G T + A + Y+ + A
Sbjct: 158 DVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKAL 217
Query: 235 VCAAEALDSRMVS-----VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVW 289
V EA ++V V F T E S I E + K
Sbjct: 218 VDLYEADRDKLVLRNGYNVTAYTF--TPSE------LYSKIKERIPEFEIEYKED----- 264
Query: 290 YIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSS 349
+K+ A+ + D A G+S L+ +
Sbjct: 265 --------FRDKIA----------------ATWPESLDSSEASNEWGFSIEYDLDRTIDD 300
Query: 350 TIQSF 354
I
Sbjct: 301 MIDHI 305
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 3e-19
Identities = 58/374 (15%), Positives = 111/374 (29%), Gaps = 111/374 (29%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGR---------AEYH 68
G +G + LLE G +V + D+ ++GR +
Sbjct: 31 GQIGSHIAELLLERGDKVVGI-------------------DNFATGRREHLKDHPNLTFV 71
Query: 69 QVDVRDISQIKKVLEGAS--TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRR 126
+ + D + + +++ V + A+ + DD+YN + G NVV A ++ V R
Sbjct: 72 EGSIADHALVNQLIGDLQPDAVVHTAASYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGR 131
Query: 127 LVYNSTADVVFDGSHDI-----HNGDET-----LTCCWKFQDLMCDLKAQAEA-LVLFAN 175
VY TA H + ++ K+ E L
Sbjct: 132 FVYFQTALCYGVKPIQQPVRLDHPRNPANSSYAIS------------KSANEDYLEYS-- 177
Query: 176 NIDGLLTCALRPSNVFGP-GDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234
GL R +NV GP + +P+ G F+ + DF +V+++A A
Sbjct: 178 ---GLDFVTFRLANVVGPRNVSGPLPIFFQRLSEGKKCFV---TKARRDFVFVKDLARAT 231
Query: 235 VCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILL 294
V A + + A+ ++ + + ++E +
Sbjct: 232 VRAVDGVGHG-------AYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIR--------- 275
Query: 295 VKWIHEKLG--LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTI- 351
D + G L+E V++ +
Sbjct: 276 ----ELGPDDAPSIL------------------LDPSRTIQDFGKIEFTPLKETVAAAVA 313
Query: 352 --------QSFSHL 357
++HL
Sbjct: 314 YFREYGVSGGYTHL 327
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 8e-19
Identities = 72/385 (18%), Positives = 122/385 (31%), Gaps = 106/385 (27%)
Query: 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD--ST-QSLQLDPSESNSLLPDSLSSGR 64
P+T ++ GF+G +L+ +LL+L +V D ST LD ++ L + R
Sbjct: 25 PKTWLITGVAGFIGSNLLEKLLKLN-QVVIGLDNFSTGHQYNLDEVKT---LVSTEQWSR 80
Query: 65 AEYHQVDVRDISQIKKVLEGASTVF-----------------YVDATDLNTDDFYNCYMI 107
+ + D+RD++ ++V++G V N
Sbjct: 81 FCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNAT---------N---- 127
Query: 108 IVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL---- 163
+ G N++ A + +V+ Y +++ G H E
Sbjct: 128 -ITGFLNILHAAKNAQVQSFTYAASSSTY--GDHPALPKVEE----------NIGNPLSP 174
Query: 164 ----KAQAEALVLFANNIDGLLTCALRPSNVFGP-GDTQL-----VPLLVNLAKPGWTKF 213
K E G T LR NVFG D +P G +
Sbjct: 175 YAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVY 234
Query: 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEG 273
I G GE DF Y++NV ++ +A A D S + + + + I +
Sbjct: 235 INGDGETSRDFCYIDNVIQMNILSALAKD----SAKDNIYNVAVGDRTTLNELSGYIYDE 290
Query: 274 LGYQRPFIKLPTGVVWYIILL------VKWIHEKLGLRTYNHSLSACYIVQLASRTRTFD 327
L KL I V+ HS + D
Sbjct: 291 LNLIHHIDKLS------IKYREFRSGDVR------------HSQA--------------D 318
Query: 328 CIAAQKHIGYSPVVSLEEGVSSTIQ 352
A + Y P + + EG+ ++
Sbjct: 319 VTKAIDLLKYRPNIKIREGLRLSMP 343
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 2e-17
Identities = 65/349 (18%), Positives = 113/349 (32%), Gaps = 90/349 (25%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGR----- 64
VV G GF+G +V +L E + + V D+ LSSG
Sbjct: 3 LIVVTGGAGFIGSHVVDKLSESNE--IVVIDN------------------LSSGNEEFVN 42
Query: 65 --AEYHQVDVRDISQIKKVLEGASTVF----YVDATDLNTDDFYNCYMIIVQGAKNVVTA 118
A + D+ IK L+GA V+ D ++ Y V ++ A
Sbjct: 43 EAARLVKADLAA-DDIKDYLKGAEEVWHIAANPDVRI-GAENPDEIYRNNVLATYRLLEA 100
Query: 119 CRECKVRRLVYNSTADVVFDGSHDIHNGDET----------LTCCWKFQDLMCDLKAQAE 168
R+ V R+V+ ST+ V G + E + K E
Sbjct: 101 MRKAGVSRIVFTSTSTVY--GEAKVIPTPEDYPTHPISLYGAS------------KLACE 146
Query: 169 ALVLFANNIDGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKPGWTKFIIGSGENMSDFTY 226
AL+ + + R +NV G T + ++ L + I+G+GE + Y
Sbjct: 147 ALIESYCHTFDMQAWIYRFANVIGRRSTHGVIYDFIMKLKRNPEELEILGNGEQNKSYIY 206
Query: 227 VENVAHAHVCAAEALDSRMV-------------------SVAGMAFFITNLEPIKFWD-- 265
+ + A + + + G++ + W
Sbjct: 207 ISDCVDAMLFGLRGDERVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGD 266
Query: 266 ----FLSII-LEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNH 309
LSI L+ LG+ +P + + V+ + E L ++H
Sbjct: 267 VPVMLLSIEKLKRLGW-KPRYNSEEA----VRMAVRDLVEDLDEEGHHH 310
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311 | Back alignment and structure |
|---|
Score = 80.6 bits (200), Expect = 7e-17
Identities = 54/268 (20%), Positives = 96/268 (35%), Gaps = 69/268 (25%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGR----- 64
+V G GF+G +V LL G + + D+L++G+
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGLEVAVL-------------------DNLATGKRENVP 42
Query: 65 --AEYHQVDVRDISQIKKVLEGAS--TVF------YVDATDLNTDDFYNCYMIIVQGAKN 114
+ +VD+RD +++ V V + +D + + + G N
Sbjct: 43 KGVPFFRVDLRDKEGVERAFREFRPTHVSHQAAQASVKVS---VEDPVLDFEVNLLGGLN 99
Query: 115 VVTACRECKVRRLVYNSTADVVFDGSHDIHNGDET----------LTCCWKFQDLMCDLK 164
++ ACR+ V +LV+ ST ++ + +ET + K
Sbjct: 100 LLEACRQYGVEKLVFASTGGAIYGEVPEGERAEETWPPRPKSPYAAS------------K 147
Query: 165 AQAEALVLFANNIDGLLTCALRPSNVFGP-----GDTQLVPLLVNLAKPGWTKFIIGS-- 217
A E + GL +LR NV+GP G+ +V + G +
Sbjct: 148 AAFEHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKT 207
Query: 218 ---GENMSDFTYVENVAHAHVCAAEALD 242
+ D+ YV +VA AH A +L+
Sbjct: 208 PGDEGCVRDYVYVGDVAEAHALALFSLE 235
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364 | Back alignment and structure |
|---|
Score = 78.6 bits (193), Expect = 6e-16
Identities = 51/373 (13%), Positives = 103/373 (27%), Gaps = 44/373 (11%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCI----VRVTDSTQSLQLDPSESNSLLPDSLSSGR 64
+++ G +G SL L V + P
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGV------------ARRTRPAWHEDNP 49
Query: 65 AEYHQVDVRDISQIKKVLEGASTVFYV-DATDLNTDDFYNCYMIIVQGAKNVVTACREC- 122
Y Q D+ D + L + V +V T N + +NV+ A
Sbjct: 50 INYVQCDISDPDDSQAKLSPLTDVTHVFYVTWANRSTEQENCEANSKMFRNVLDAVIPNC 109
Query: 123 -KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL---KAQAEALVLFANNID 178
++ + + + + + + + ++ +
Sbjct: 110 PNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRLKYMNFYYDLEDIMLEEVEKKE 169
Query: 179 GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIG----------SGENMSDFTYVE 228
GL RP N+FG ++ L+ L G + + SD + +
Sbjct: 170 GLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDAD 229
Query: 229 NVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLG-----YQRPFIKL 283
+A H+ AA AF ++N + K+ F ++ E G Y+
Sbjct: 230 LIAEHHIWAAVD-----PYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDLK 284
Query: 284 PTGVVWYIILLVKWIHEKLGLR--TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVV 341
++ + + I + GL + + D + K G+
Sbjct: 285 LQDLMKGKEPVWEEIVRENGLTPTKLKDVGIWWFGDVILGNECFLDSMNKSKEHGFLGFR 344
Query: 342 SLEEGVSSTIQSF 354
+ + S I
Sbjct: 345 NSKNAFISWIDKA 357
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 7e-16
Identities = 34/234 (14%), Positives = 68/234 (29%), Gaps = 56/234 (23%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G +GR + RL + + I+R+ D L P + E Q D+ D
Sbjct: 11 AAGQLGRVMRERLAPMAE-ILRLAD--------------LSPLDPAGPNEECVQCDLADA 55
Query: 76 SQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135
+ + ++ G + ++ F + G N+ A R R+V+ S+
Sbjct: 56 NAVNAMVAGCDGIVHL-GGISVEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHT 114
Query: 136 VFDGSHDIHNG-DET----------LTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCA 184
+ G + ++ K E L + G T
Sbjct: 115 I--GYYPQTERLGPDVPARPDGLYGVS------------KCFGENLARMYFDKFGQETAL 160
Query: 185 LRPSNVFGPGD--------------TQLVPLLVNLAKPGWTKFIIGSGENMSDF 224
+R + + L+ + G + G+ N + +
Sbjct: 161 VRIGSCTPEPNNYRMLSTWFSHDDFVSLIEAVFRAPVLGCP-VVWGASANDAGW 213
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 1e-15
Identities = 73/374 (19%), Positives = 123/374 (32%), Gaps = 100/374 (26%)
Query: 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGR------ 64
VV G GF+G LV +L+ELG +V V D+LSSGR
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEVVVV-------------------DNLSSGRREFVNP 43
Query: 65 -AEYHQVDVRDISQIKKVLEGASTVF----------YVDATDLNTDDFYNCYMIIVQGAK 113
AE H D++D S + VF + F V
Sbjct: 44 SAELHVRDLKDYSWGAGI--KGDVVFHFAANPEVRLSTTEPIV---HFNEN----VVATF 94
Query: 114 NVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDET----------LTCCWKFQDLMCDL 163
NV+ R+ VR +V+ S++ V G D+ E
Sbjct: 95 NVLEWARQTGVRTVVFASSSTVY--GDADVIPTPEEEPYKPISVYGAA------------ 140
Query: 164 KAQAEALVLFANNIDGLLTCALRPSNVFGP-GDTQLVPLLVNLAKPGWTKFII-GSGENM 221
KA E + + G+ A+R +NV GP ++ + + + G G
Sbjct: 141 KAAGEVMCATYARLFGVRCLAVRYANVVGPRLRHGVIYDFIMKLRRNPNVLEVLGDGTQR 200
Query: 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFI 281
+ YV + A + A + + + +A + N++ ++ D I+ E LG +
Sbjct: 201 KSYLYVRDAVEATLAAWKKFEE--MDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIR 258
Query: 282 KLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQL-ASRTRTFDCIAAQKHIGYSPV 340
+P T + + + + T+ K G+ P
Sbjct: 259 LVP--------------------STPDGRGWPGDVKYMTLAVTK------LMKLTGWRPT 292
Query: 341 VSLEEGVSSTIQSF 354
++ E V T +
Sbjct: 293 MTSAEAVKKTAEDL 306
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 1e-15
Identities = 38/254 (14%), Positives = 67/254 (26%), Gaps = 80/254 (31%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRA----EYHQVD 71
G VG ++ L L VR++D + G A E D
Sbjct: 10 AAGGVGSAIRPHLGTLA-HEVRLSDI------------------VDLGAAEAHEEIVACD 50
Query: 72 VRDISQIKKVLEGASTVF----------YVDATDLNTDDFYNCYMIIVQGAKNVVTACRE 121
+ D + +++ + + D N + GA N+ A R
Sbjct: 51 LADAQAVHDLVKDCDGIIHLGGVSVERPWNDILQAN-----------IIGAYNLYEAARN 99
Query: 122 CKVRRLVYNSTADVVFDGSHDIHNGDET---------LTCCWKFQDLMCDLKAQAEALVL 172
R+V+ S+ + E L+ K E L
Sbjct: 100 LGKPRIVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLS------------KCFGEDLAS 147
Query: 173 FANNIDGLLTCALRPSNVFGPGDT--------------QLVPLLVNLAKPGWTKFIIGSG 218
+ + T +R + F +L+ K G T + G+
Sbjct: 148 LYYHKFDIETLNIRIGSCFPKPKDARMMATWLSVDDFMRLMKRAFVAPKLGCT-VVYGAS 206
Query: 219 ENMSDFTYVENVAH 232
N + + A
Sbjct: 207 ANTESWWDNDKSAF 220
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 5e-15
Identities = 61/365 (16%), Positives = 104/365 (28%), Gaps = 83/365 (22%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G GF+G ++V L + G + V D+ L L D + + D
Sbjct: 54 GAGFIGSNIVKALNDKGITDILVVDN-----LKDGTKFVNLVDL--NIADYMDKEDFLIQ 106
Query: 76 SQIKKVLEGASTVF----YVDATDLNTDDFYNCYMII--VQGAKNVVTACRECKVRRLVY 129
+ +F T+ + YM+ Q +K ++ C E ++ +Y
Sbjct: 107 IMAGEEFGDVEAIFHEGACSSTTEWDGK-----YMMDNNYQYSKELLHYCLEREIP-FLY 160
Query: 130 NSTADVVFDGSHDIHNGDETL--------TCCWKFQDLMCDLKAQAEALVLFANNIDGLL 181
S+A + D E + K + V
Sbjct: 161 ASSAATYGGRTSDFIESREYEKPLNVFGYS------------KFLFDEYVRQILPEANSQ 208
Query: 182 TCALRPSNVFGP-----GDTQLV-PLLVNLAKPGWTKFII-GSGENMSDFTYVENVAHAH 234
R NV+GP G V L G + + GS DF YV +VA +
Sbjct: 209 IVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVN 268
Query: 235 VCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP-FIKLPTGVVWYIIL 293
+ E S + ++ T F L + +I P
Sbjct: 269 LWFLENGVSGIFNLG------TG-RAESFQAVADATLAYHKKGQIEYIPFP--------- 312
Query: 294 LVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQS 353
+KL R + + D + P ++ EGV+ +
Sbjct: 313 ------DKLKGRYQAFTQA--------------DLTNLRAAGYDKPFKTVAEGVTEYMAW 352
Query: 354 FSHLA 358
+ A
Sbjct: 353 LNRDA 357
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 1e-14
Identities = 62/377 (16%), Positives = 102/377 (27%), Gaps = 89/377 (23%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G GF+G L L+ G V V D L++ P L E + D+ D+
Sbjct: 15 GAGFIGGHLARALVASG-EEVTVLDD---LRVPPMIPPEGTGKFLEKPVLELEERDLSDV 70
Query: 76 SQIKKVLEGA--STVFYVD---ATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130
+ + S N V ++++ C V ++V
Sbjct: 71 RLV--YHLASHKSVPRSFKQPLDYLDN-----------VDSGRHLLALCTSVGVPKVVVG 117
Query: 131 STADVVFDGSHDIHNGDETLTCCWKFQDLMCDL--------KAQAEALVL-FANNIDGLL 181
ST +V G D E K E +
Sbjct: 118 STCEVY--GQADTLPTPED----------SPLSPRSPYAASKVGLEMVAGAHQRASVAPE 165
Query: 182 TCALRPSNVFGP-GDTQLV-PLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239
+R NV+GP + P L + G GE DFTY+ +V V A
Sbjct: 166 VGIVRFFNVYGPGERPDALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALAN 225
Query: 240 ALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP-FIKLPTGVVWYIILLVKWI 298
+ + + D + I+ + +
Sbjct: 226 -------RPLPSVVNFGSGQSLSVNDVIRILQATSPAAEVARKQPRPNEI---------- 268
Query: 299 HEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGY-SPVVSLEEGVSSTIQSFSHL 357
+ D + IG S + +EEG+ T++ +
Sbjct: 269 ---------TEFRA--------------DTALQTRQIGERSGGIGIEEGIRLTLEWWQ-- 303
Query: 358 ARDSSLAYSRDFNEQSK 374
+RD R F E+
Sbjct: 304 SRDLDDIRQRIFQEEGA 320
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 2e-14
Identities = 62/370 (16%), Positives = 102/370 (27%), Gaps = 93/370 (25%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G GF+G ++V L + G + V D+ L L D + + D
Sbjct: 7 GAGFIGSNIVKALNDKGITDILVVDN-----LKDGTKFVNLVDL--NIADYMDKEDFLIQ 59
Query: 76 SQIKKVLEGASTVF----YVDATDLNTDDFYNCYMII--VQGAKNVVTACRECKVRRLVY 129
+ +F T+ + YM+ Q +K ++ C E ++ +Y
Sbjct: 60 IMAGEEFGDVEAIFHEGACSSTTEWDGK-----YMMDNNYQYSKELLHYCLEREIPF-LY 113
Query: 130 NSTADVVFDGSHDIHNGDET----------LTCCWKFQDLMCDLKAQAEALVLFANNIDG 179
S+A G + + K + V
Sbjct: 114 ASSAATY--GGRTSDFIESREYEKPLNVYGYS------------KFLFDEYVRQILPEAN 159
Query: 180 LLTCALRPSNVFGP-----GDTQLV-PLLVNLAKPGWTKFII-GSGENMSDFTYVENVAH 232
R NV+GP G V L G + + GS DF YV +VA
Sbjct: 160 SQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAD 219
Query: 233 AHVCAAEALDSRMVSVAGMAFFITNL---EPIKFWDFLSIILEGLGYQRP-FIKLPTGVV 288
++ E S I NL F L + +I P
Sbjct: 220 VNLWFLENGVSG----------IFNLGTGRAESFQAVADATLAYHKKGQIEYIPFP---- 265
Query: 289 WYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVS 348
+KL R + + D + P ++ EGV+
Sbjct: 266 -----------DKLKGRYQAFTQA--------------DLTNLRAAGYDKPFKTVAEGVT 300
Query: 349 STIQSFSHLA 358
+ + A
Sbjct: 301 EYMAWLNRDA 310
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 64/376 (17%), Positives = 112/376 (29%), Gaps = 86/376 (22%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+ GF+ + RL G V +D + E+H VD
Sbjct: 33 SITGAGGFIASHIARRLKHEG-HYVIASDW-----KKNEHMTEDMFCD------EFHLVD 80
Query: 72 VRDISQIKKVLEGASTVF----------YVDATDLNTDDFYNCYMIIVQGAKNVVTACRE 121
+R + KV EG VF ++ + YN + N++ A R
Sbjct: 81 LRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVI--MYNN----TMISFNMIEAARI 134
Query: 122 CKVRRLVYNSTADVVFDGSHDIHNGDETLT---CCWKFQDLMC-DL-KAQAEALVLFANN 176
++R Y S+A + W + L K E L N
Sbjct: 135 NGIKRFFYASSACIY--PEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNK 192
Query: 177 IDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFII-GSGENMSDFTYVEN 229
G+ R N++GP T + A+ +F + G G FT+++
Sbjct: 193 DFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDE 252
Query: 230 VAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP--FIKLPTGV 287
E + S I + E + + ++L + P I P GV
Sbjct: 253 C-------VEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGV 305
Query: 288 VWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGV 347
R R D ++ +G++P + L+EG+
Sbjct: 306 ----------------------------------RGRNSDNNLIKEKLGWAPNMRLKEGL 331
Query: 348 SSTIQSF-SHLARDSS 362
T + ++ +
Sbjct: 332 RITYFWIKEQIEKEKA 347
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 70/378 (18%), Positives = 128/378 (33%), Gaps = 87/378 (23%)
Query: 3 FDEAIPRTCVVLNGRGFVGRSLVLRLLELG-KCIVRVTD--STQSLQLDPSESNSLLPDS 59
DE +T ++ G GFVG +L E K V V D + +L + S+ +
Sbjct: 5 DDELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKN 64
Query: 60 LSSGRAEYHQVDVRDISQIKKVLE-GASTVFY------VDATDLNTDDFYNCYMIIVQGA 112
L + E D+ + ++++ + +F+ + N Q
Sbjct: 65 LIGFKGEVIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTN-----YQAF 119
Query: 113 KNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL--------K 164
N++ R K + ++Y S+A V G+ + K
Sbjct: 120 LNLLEIARSKKAK-VIYASSAGVY---------GNTKAP----NVVGKNESPENVYGFSK 165
Query: 165 AQAEALVLFANNIDGLLTCALRPSNVFGP-----GDTQLV-PLLVNLAKPGWTKFIIGSG 218
+ VL ++ + + LR NV+GP T + L A + G
Sbjct: 166 LCMDEFVL--SHSNDNVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFG 223
Query: 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQR 278
E + DF Y+E+V A+V A +A S + +V + + + + +SI+ E LG +
Sbjct: 224 EQLRDFVYIEDVIQANVKAMKAQKSGVYNVG------YS-QARSYNEIVSILKEHLGDFK 276
Query: 279 P-FIKLP-TGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIG 336
+IK P + H+ A +
Sbjct: 277 VTYIKNPYAF---FQ----------------KHT--------QAHIEP------TILDLD 303
Query: 337 YSPVVSLEEGVSSTIQSF 354
Y+P+ LE G+ +
Sbjct: 304 YTPLYDLESGIKDYLPHI 321
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 3e-13
Identities = 44/263 (16%), Positives = 90/263 (34%), Gaps = 39/263 (14%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ 77
G +G L RL G VT +S + +G + DV
Sbjct: 12 GDLGLELARRLTAQG---HEVTGLRRS------------AQPMPAG-VQTLIADVTRPDT 55
Query: 78 IKKVLEGASTVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136
+ ++ + +D+ Y + V+G +N ++A ++ + + S+ V
Sbjct: 56 LASIVHLRPEILVYCVAASEYSDEHYR--LSYVEGLRNTLSALEGAPLQHVFFVSSTGVY 113
Query: 137 FDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT 196
+ DE +D +AEAL+ + LR S ++GPG
Sbjct: 114 GQEVEEW--LDEDTPP--IAKDFSGKRMLEAEALLA------AYSSTILRFSGIYGPGRL 163
Query: 197 QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFIT 256
+++ T + ++ + ++ A A + R +V + +T
Sbjct: 164 RMIRQAQ-------TPEQWPARNAWTNRIHRDDGAAF---IAYLIQQRSHAVPERLYIVT 213
Query: 257 NLEPIKFWDFLSIILEGLGYQRP 279
+ +P+ D L + + G P
Sbjct: 214 DNQPLPVHDLLRWLADRQGIAYP 236
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 4e-13
Identities = 53/241 (21%), Positives = 91/241 (37%), Gaps = 31/241 (12%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ 77
GF+G ++ LLE G V T ++ + + L +S + + D+ +
Sbjct: 11 GFLGSWIIKSLLENG-YSVNTT--IRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDS 67
Query: 78 IKKVLEGASTVFYVDAT--DLNTDDFYNCYMII--VQGAKNVVTACRECK-VRRLVYNST 132
+EG +F+ A+ D + + V GA ++ AC K V+R +Y S+
Sbjct: 68 FAAAIEGCVGIFHT-ASPIDFAVSEPEE-IVTKRTVDGALGILKACVNSKTVKRFIYTSS 125
Query: 133 ADVVFDGSHDIHNGDET----LTCCWKFQDLM---CDLKAQAEALVL-FA--NNIDGLLT 182
V D DE+ + + K AE VL F N ID ++T
Sbjct: 126 GSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNGID-VVT 184
Query: 183 CALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY----VENVAHAHVCAA 238
L + G +P + A ++G E + + V++VA AH+
Sbjct: 185 --LILPFIVGRFVCPKLPDSIEKAL----VLVLGKKEQIGVTRFHMVHVDDVARAHIYLL 238
Query: 239 E 239
E
Sbjct: 239 E 239
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 8e-13
Identities = 60/241 (24%), Positives = 100/241 (41%), Gaps = 31/241 (12%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ 77
GF+G LV+RLLE G VR T + + + LL + + D+ D
Sbjct: 15 GFIGSWLVMRLLERG-YTVRAT--VRDPT-NVKKVKHLLDLPKAETHLTLWKADLADEGS 70
Query: 78 IKKVLEGASTVFYVDAT--DLNTDDFYNCYMII--VQGAKNVVTACRECK-VRRLVYNST 132
+ ++G + VF+V AT D + D N +I ++G ++ +C K VRRLV+ S+
Sbjct: 71 FDEAIKGCTGVFHV-ATPMDFESKDPEN-EVIKPTIEGMLGIMKSCAAAKTVRRLVFTSS 128
Query: 133 ADVVFDGSHDIHNGDET----LTCCWKFQDLM---CDLKAQAEALVL-FA--NNIDGLLT 182
A V H + DE+ + C + K AE +A NNID +T
Sbjct: 129 AGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKENNID-FIT 187
Query: 183 CALRPSNVFGPGDTQLVP----LLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238
+ P+ V GP +P ++ + I ++++ +AH+
Sbjct: 188 --IIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVH---LDDLCNAHIYLF 242
Query: 239 E 239
E
Sbjct: 243 E 243
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 48/369 (13%), Positives = 106/369 (28%), Gaps = 99/369 (26%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ 77
G +G L +L +L + D + N+ D ++SG + V+ D +Q
Sbjct: 12 GQIGTELTQKLRKLYGTENVIAS-------DIRKLNT---DVVNSGP--FEVVNALDFNQ 59
Query: 78 IKKVL--EGASTVF---------YVD----ATDLNTDDFYNCYMIIVQGAKNVVTACREC 122
I+ ++ + ++ A DLN + +V+ +
Sbjct: 60 IEHLVEVHKITDIYLMAALLSATAEKNPAFAWDLN-----------MNSLFHVLNLAKAK 108
Query: 123 KVRRLVYNSTADVVFDGSHDIHNGDET----------LTCCWKFQDLMCDLKAQAEALVL 172
K++++ + S+ VF + N + ++ K E
Sbjct: 109 KIKKIFWPSSIA-VFGPTTPKENTPQYTIMEPSTVYGIS------------KQAGERWCE 155
Query: 173 FANNIDGLLTCALRPSNVFGP------GDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY 226
+ +NI G+ ++R + G T + A S E Y
Sbjct: 156 YYHNIYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYKAIADKKYECFLSSETKMPMMY 215
Query: 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTG 286
+++ A + +A ++ + + P + + + +
Sbjct: 216 MDDAIDATINIMKAPVEKIKIHSSYNLAAMSFTPTEIANEIKKHIPEFT----------- 264
Query: 287 VVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEG 346
I +K+ S + D A++ + LE
Sbjct: 265 -----ITYEPDFRQKIA----------------DSWPASIDDSQAREDWDWKHTFDLESM 303
Query: 347 VSSTIQSFS 355
I+ S
Sbjct: 304 TKDMIEHLS 312
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 2e-12
Identities = 36/229 (15%), Positives = 72/229 (31%), Gaps = 53/229 (23%)
Query: 18 GFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD 74
G G + + + ++ G +VR D S S P A DV
Sbjct: 13 GQTGLTTLAQAVQAGYEVTVLVR----------DSSRLPSEGPR-----PAHVVVGDVLQ 57
Query: 75 ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134
+ + K + G V + T + ++ +GA+N+V A + V ++V ++A
Sbjct: 58 AADVDKTVAGQDAVIVLLGTRNDLSP----TTVMSEGARNIVAAMKAHGVDKVVACTSAF 113
Query: 135 VVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPG 194
+++D + + Q + D + ++ + GL A+ P G
Sbjct: 114 LLWDPTKVPP----------RLQAVTDD-HIRMHKVLRES----GLKYVAVMPP-HIGDQ 157
Query: 195 DTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243
+ G S ++ H L +
Sbjct: 158 P------------LTGAYTVTLDGRGPSRVISKHDLGH---FMLRCLTT 191
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221 | Back alignment and structure |
|---|
Score = 65.0 bits (158), Expect = 3e-12
Identities = 33/238 (13%), Positives = 64/238 (26%), Gaps = 40/238 (16%)
Query: 18 GFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD 74
G G ++ G IVR + + Q D+ D
Sbjct: 10 GRAGSRILEEAKNRGHEVTAIVR----------NAGKITQTHK------DINILQKDIFD 53
Query: 75 ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134
L + V + + + V ++++ RL+ A
Sbjct: 54 --LTLSDLSDQNVVVDAYGISPDEAEKH------VTSLDHLISVLNGTVSPRLLVVGGAA 105
Query: 135 VVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPG 194
+ + + +AQA+ L ++ + PS +F PG
Sbjct: 106 SLQIDEDGNTLLESK---GLREAPYYPTARAQAKQLEHLKSHQAEFSWTYISPSAMFEPG 162
Query: 195 DTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE--ALDSRMVSVAG 250
+ + G + F +E+ A A + E + +VAG
Sbjct: 163 ERTGDYQIG-----KDHLLFGSDGNS---FISMEDYAIAVLDEIERPNHLNEHFTVAG 212
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 3e-11
Identities = 45/276 (16%), Positives = 74/276 (26%), Gaps = 50/276 (18%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLP-----------DSLS 61
V+ G G+ G + L L + + V + + L SL P +L+
Sbjct: 16 VIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT 75
Query: 62 SGRAEYHQVDVRDISQIKKVL--EGASTVF------YVDATDLNTDDFYNCYMIIVQGAK 113
E + D+ D + + +V + ++ V G
Sbjct: 76 GKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTL 135
Query: 114 NVVTACRECKVR-RLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL--------- 163
NV+ A +E LV T + DI G T+T + L
Sbjct: 136 NVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLS 195
Query: 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPG--------------------DTQLVPLLV 203
K + F G+ L V+G T L V
Sbjct: 196 KVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCV 255
Query: 204 NLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239
A G + G G + + + A
Sbjct: 256 QAAV-GHPLTVYGKGGQTRGYLDIRDTVQCVEIAIA 290
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 5e-11
Identities = 32/242 (13%), Positives = 49/242 (20%), Gaps = 54/242 (22%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELG-----KCIVRVTDSTQSLQLDPSESNSLLPDSLSSG 63
++ +L G GR L+ +LE G I R L D +
Sbjct: 19 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGR---------------RKLTFDEEAYK 63
Query: 64 RAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK 123
VD + +G F T + +
Sbjct: 64 NVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGG 123
Query: 124 VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTC 183
+ S+ G+ N K + EA V +
Sbjct: 124 CKHFNLLSSK-----GADKSSNFLYLQV------------KGEVEAKVE---ELKFDRYS 163
Query: 184 ALRPSNVFGPGDT-----QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238
RP + LV W V V A +
Sbjct: 164 VFRPGVLLCDRQESRPGEWLVRKFFGSLPDSWASGH---------SVPVVTVVRAMLNNV 214
Query: 239 EA 240
Sbjct: 215 VR 216
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 3e-10
Identities = 33/235 (14%), Positives = 65/235 (27%), Gaps = 52/235 (22%)
Query: 12 VVLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+V+ G V R L+ L G +VR + + L G ++
Sbjct: 25 LVVGANGKVARYLLSELKNKGHEPVAMVR----------NEEQGPELRER----GASDIV 70
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
++ + V + A +I + GA + + ++R +
Sbjct: 71 VANLEE--DFSHAFASIDAVVFA-AGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFI 127
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
S+ G+ D G + K A+ + + L +RP
Sbjct: 128 MVSSV-----GTVDPDQGPMNMR-------HYLVAKRLADDELKRS----SLDYTIVRPG 171
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243
+ T V + ++ +VA AE +D
Sbjct: 172 PLSNEESTGKVTV-------------SPHFSEITRSITRHDVAK---VIAELVDQ 210
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 6e-10
Identities = 32/256 (12%), Positives = 65/256 (25%), Gaps = 61/256 (23%)
Query: 18 GFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD 74
G G ++V G +VR DP ++ L A +
Sbjct: 10 GRAGSAIVAEARRRGHEVLAVVR----------DPQKAADRL-------GATVATLVKEP 52
Query: 75 ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134
+ + L+ V + + Y + + A ++V+ R + +A
Sbjct: 53 LVLTEADLDSVDAVVDALSVPWGSGRGY----LHLDFATHLVSLLRNSDTLAVFILGSAS 108
Query: 135 VVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-----GLLTCALRPSN 189
+ G+ D F + AL + + + PS
Sbjct: 109 LAMPGADHPMILD--------FPESAASQPWYDGALYQYYEYQFLQMNANVNWIGISPSE 160
Query: 190 VFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD-----FTYVENVAHAHVCAAEALDSR 244
F G T ++ G + N+A A + E
Sbjct: 161 AFPSGPA--------------TSYVAGKDTLLVGEDGQSHITTGNMALAILDQLEHP--- 203
Query: 245 MVSVAGMAFFITNLEP 260
+ + + +
Sbjct: 204 --TAIRDRIVVRDADL 217
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 7e-10
Identities = 56/368 (15%), Positives = 102/368 (27%), Gaps = 90/368 (24%)
Query: 18 GFVGRSLVLRLLELGKCI------VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
G VGR L RL++ G + D P SG + D
Sbjct: 24 GMVGRKLTQRLVKDGSLGGKPVEKFTLIDV-----FQPEAPAGF------SGAVDARAAD 72
Query: 72 VRDISQIKKVLE-GASTVF----YVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR- 125
+ + +K++E +F V DF Y I + G + + A R +
Sbjct: 73 LSAPGEAEKLVEARPDVIFHLAAIVSGE--AELDFDKGYRINLDGTRYLFDAIRIANGKD 130
Query: 126 ----RLVYNSTADVVFDGSHDIHNGDETLT------CCWKFQDLMCDLKAQAEALVLFAN 175
R+V+ S+ VF DE T K +C E L+ +
Sbjct: 131 GYKPRVVFTSSI-AVFGAPLPYPIPDEFHTTPLTSYGTQK---AIC------ELLLSDYS 180
Query: 176 NIDGLLTCALRPSNVFGP------GDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY--- 226
+R + + ++ G +
Sbjct: 181 RRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIRHWHASPRS 240
Query: 227 -VENVAHAHVCAAEAL-DSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLP 284
V + H + E + R +S+ G++ T E +E L
Sbjct: 241 AVGFLIHGAMIDVEKVGPRRNLSMPGLSA--TVGE----------QIEALRKVAG----- 283
Query: 285 TGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLE 344
+ + L + + F+ A++ +G++ S E
Sbjct: 284 --------------EKAVALIRREPNEMIMRMC--EGWAPGFEAKRARE-LGFTAESSFE 326
Query: 345 EGVSSTIQ 352
E + I+
Sbjct: 327 EIIQVHIE 334
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 9e-10
Identities = 31/247 (12%), Positives = 63/247 (25%), Gaps = 63/247 (25%)
Query: 18 GFVGRSLVLRLLELG-----KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV 72
G G+ + +L E K +VR + + A+ D+
Sbjct: 14 GRTGQIVYKKLKEGSDKFVAKGLVR----------SAQGKEKIGGE------ADVFIGDI 57
Query: 73 RDISQIKKVLEGASTVFYV----------------DATDLNTDDFYNCYMIIVQGAKNVV 116
D I +G + + + +D + G KN +
Sbjct: 58 TDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQI 117
Query: 117 TACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN 176
A + V+ +V + G+ + K +AE + +
Sbjct: 118 DAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNI----------LVWKRKAEQYLADS-- 165
Query: 177 IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236
G +R + L+ G ++ + +VA
Sbjct: 166 --GTPYTIIRAGGLLDKEGGVRELLV------GKDDELLQTDTKTVP---RADVAE---V 211
Query: 237 AAEALDS 243
+AL
Sbjct: 212 CIQALLF 218
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A Length = 299 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 1e-09
Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 24/133 (18%)
Query: 8 PRTCVVLNGRGFVGRSLVLRLLELGK----CIVRVTDSTQSLQLDPSESNSLLPDSLSSG 63
+ VV G G G S+ LLE G + R + +L
Sbjct: 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKEL-------------RLQ 51
Query: 64 RAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMII-VQGAKNVVTACREC 122
AE Q D D ++ L GA F + T+ + +C V+ K + R
Sbjct: 52 GAEVVQGDQDDQVIMELALNGAYATF------IVTNYWESCSQEQEVKQGKLLADLARRL 105
Query: 123 KVRRLVYNSTADV 135
+ +VY+ ++
Sbjct: 106 GLHYVVYSGLENI 118
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 2e-09
Identities = 32/227 (14%), Positives = 63/227 (27%), Gaps = 53/227 (23%)
Query: 18 GFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV-R 73
G VG+SL+ L R + + DV
Sbjct: 10 GRVGKSLLKSLSTTDYQIYAGAR----------KVEQVPQY-------NNVKAVHFDVDW 52
Query: 74 DISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133
++ K L G + ++ + + + GA ++ A + +V+R + ST
Sbjct: 53 TPEEMAKQLHGMDAI--INVSGSGGKSLLK---VDLYGAVKLMQAAEKAEVKRFILLSTI 107
Query: 134 DVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGP 193
I G + L K A+ + N+D ++P +
Sbjct: 108 F-SLQPEKWIGAGFDALK-------DYYIAKHFADLYLTKETNLD---YTIIQPGALTEE 156
Query: 194 GDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEA 240
T L+ + + +S + +VA
Sbjct: 157 EATGLIDI----------------NDEVSASNTIGDVADTIKELVMT 187
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 2e-09
Identities = 69/249 (27%), Positives = 97/249 (38%), Gaps = 39/249 (15%)
Query: 18 GFVGRSLVLRLLELGKCIVRVT--DSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
GFV LV LL+ G V T D D + S L + G + + D+ D
Sbjct: 19 GFVASLLVKLLLQKG-YAVNTTVRD------PDNQKKVSHLLELQELGDLKIFRADLTDE 71
Query: 76 SQIKKVLEGASTVFYVDAT--DLNTDDFYNCYMII--VQGAKNVVTACRECK-VRRLVYN 130
+ + G VF+V AT ++D N MI +QG NV+ AC K V+R++
Sbjct: 72 LSFEAPIAGCDFVFHV-ATPVHFASEDPEN-DMIKPAIQGVVNVMKACTRAKSVKRVILT 129
Query: 131 STADVVFDGSHDIHNG--DET----LTCCWKFQDLM---CDLKAQAEALVL-FA--NNID 178
S+A V D DE + + K AE FA NNID
Sbjct: 130 SSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEENNID 189
Query: 179 GLLTCALRPSNVFGPGDTQLVP----LLVNLAKPGWTKFIIGSGENMSDFTY----VENV 230
L+T + P+ + G T VP L ++L G M + VE+V
Sbjct: 190 -LIT--VIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVEDV 246
Query: 231 AHAHVCAAE 239
AH+ AE
Sbjct: 247 CRAHIFVAE 255
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 2e-08
Identities = 27/279 (9%), Positives = 67/279 (24%), Gaps = 66/279 (23%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
+GFVG++L L +
Sbjct: 8 AKGFVGKNLKADLTSTTDHHIFEVH------------------------------RQTKE 37
Query: 76 SQIKKVLEGASTVFYVDATDLNTDDFYNCYMII-VQGAKNVVTACRECKVRRLVYNSTAD 134
+++ L A + ++ +N + + + V +V+ + + S++
Sbjct: 38 EELESALLKADFIVHLAG--VNRPEHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSS- 94
Query: 135 VVFDGSHDIHNGDET---LTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVF 191
I + + K Q E L+ G R N+F
Sbjct: 95 --------IQATQDNPYGES------------KLQGEQLLREYAEEYGNTVYIYRWPNLF 134
Query: 192 GPG----DTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247
G ++ + YV+++ A E +
Sbjct: 135 GKWCKPNYNSVIATFCYKIARNEE-IQVNDRNVELTLNYVDDIVAEIKRAIEGTPTIE-- 191
Query: 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTG 286
+ N+ + + + ++ + +
Sbjct: 192 --NGVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKLD 228
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 2e-08
Identities = 33/233 (14%), Positives = 65/233 (27%), Gaps = 46/233 (19%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+L G + + L LL + + + P+ + R +
Sbjct: 9 TILGAAGQIAQXLTATLLTYTDMHITL--------YGRQLKTRIPPEIIDHERVTVIEGS 60
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131
++ +++ + A VF M ++V A +RR++ S
Sbjct: 61 FQNPGXLEQAVTNAEVVF-------------VGAMESGSDMASIVKALSRXNIRRVIGVS 107
Query: 132 TADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVF 191
A + S + E T + + QA ++ L LR + ++
Sbjct: 108 MAGL----SGEFPVALEKWTFDNLPISYVQG-ERQARNVL----RESNLNYTILRLTWLY 158
Query: 192 GPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYV--ENVAHAHVCAAEALD 242
P T + + + V E V A A D
Sbjct: 159 ND--------------PEXTDYELIPEGAQFNDAQVSREAVVKAIFDILHAAD 197
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 3e-08
Identities = 45/319 (14%), Positives = 93/319 (29%), Gaps = 65/319 (20%)
Query: 6 AIPRTCVVL--NGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSL 60
+P +VL GFV +V +LLE G + R S+ +L
Sbjct: 7 VLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTAR----------SASKLANLQKRWD 56
Query: 61 SSGRAEYHQVDVRDISQ---IKKVLEGASTVFYVDATDLNTDDFYNCYMII--VQGAKNV 115
+ + V D+ + +V++GA+ V ++ A+ ++ + Y+ ++ + G N
Sbjct: 57 AKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAHI-ASVVSFSNKYD-EVVTPAIGGTLNA 114
Query: 116 VTACRECK-VRRLVYNSTADVVFDGSHDIHNG--------DETLTCCWKFQDLMCDL--- 163
+ A V+R V S+ ++ E++ +
Sbjct: 115 LRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLW 174
Query: 164 -----KAQAE--ALVLFANNIDGLLTCALRPSNVFGP---------GDTQLVPLLVNLAK 207
K +AE A N A+ P+ G + + L N
Sbjct: 175 VYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEV 234
Query: 208 PGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFL 267
+ + ++ H+ + + T + L
Sbjct: 235 SPALALMPPQY-----YVSAVDIGLLHLGCLVL-----PQIERRRVYGTA-GTFDWNTVL 283
Query: 268 SIILEGLGYQRPFIKLPTG 286
+ + P P
Sbjct: 284 ATFRK----LYPSKTFPAD 298
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 4e-08
Identities = 78/488 (15%), Positives = 139/488 (28%), Gaps = 191/488 (39%)
Query: 5 EAIPRTCVVLNGRGFVGRS-LVLRL----------------LELGKC--IVRVTDSTQSL 45
E P V+++G G++ + L + L L C V + Q L
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 46 --QLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYN 103
Q+DP+ ++ D S+ + H + + L L + + N
Sbjct: 206 LYQIDPNWTS--RSDHSSNIKLRIHSIQAE-----LRRL-------------LKSKPYEN 245
Query: 104 CYMII--VQGAKNVVTACR-ECKVRRLV---YNSTADVVFDGSHDIH----NGDETLTCC 153
C +++ VQ AK A CK+ L+ + D + + H + TLT
Sbjct: 246 CLLVLLNVQNAK-AWNAFNLSCKI--LLTTRFKQVTDFL-SAATTTHISLDHHSMTLT-- 299
Query: 154 WKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKF 213
E L +D L + P +++
Sbjct: 300 ------------PDEVKSLLLKYLDCRPQD-LPREVL------TTNPRRLSII------- 333
Query: 214 IIGSGENMSDF--TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK----FWDFL 267
E++ D T+ +N H + + L + ++ + LEP + F L
Sbjct: 334 ----AESIRDGLATW-DNWKHVNC---DKL-TTIIES-----SLNVLEPAEYRKMFDR-L 378
Query: 268 SIILEGLGYQRPFIKLPTGV---VWY---------II-------LLVKW-------IH-- 299
S+ +PT + +W+ ++ L+ K I
Sbjct: 379 SVFPPS-------AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 300 -----EKLGLRTYNH-SLSACYIVQLASRTRTFDCIAAQK---------HIGYSPVVSLE 344
KL H S+ Y + +TFD HIG+
Sbjct: 432 YLELKVKLENEYALHRSIVDHY-----NIPKTFDSDDLIPPYLDQYFYSHIGH------- 479
Query: 345 EGVSSTIQSFSHLAR----DSSLAYSR---DFN-EQSKVEK----LLGGGKVADILLWKD 392
HL + + DF + K+ G + + L
Sbjct: 480 -----------HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ--Q 526
Query: 393 EKKTFTYF 400
K Y
Sbjct: 527 LKFYKPYI 534
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 1e-07
Identities = 56/400 (14%), Positives = 115/400 (28%), Gaps = 100/400 (25%)
Query: 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD-STQSLQLDPSESNSLLPDSLSSGRAE 66
+ ++L GF+G L R+LE V D T L D + R
Sbjct: 24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLG-----------DLVKHERMH 72
Query: 67 YHQVDVRDISQIKKVLEG-----------ASTVFY----VDATDLNTDDFYNCYMIIVQG 111
+ + D+ + + A+ Y + +L+ +
Sbjct: 73 FFEGDITINKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELD-----------FEA 121
Query: 112 AKNVVTACRECKVRRL------VYNSTADVVFDGSHDIHNG----------DETLTCCWK 155
+V + + + VY AD FD +
Sbjct: 122 NLPIVRSAVKYGKHLVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACS------ 175
Query: 156 FQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGP----------GDTQLVPLLVNL 205
K + ++ + ++GL RP N GP G +++V +
Sbjct: 176 --------KQLMDRVI-WGYGMEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGH 226
Query: 206 AKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN-LEPIKFW 264
G ++ G FTYV++ A + E + G + I N
Sbjct: 227 IVRGENISLVDGGSQKRAFTYVDDGISALMKIIENSNGVAT---GKIYNIGNPNNNFSVR 283
Query: 265 DFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTR 324
+ + +LE + V ++ + G + R
Sbjct: 284 ELANKMLELAAEFPEYADSAKRVK--LVETTSGAYYGNG--------------YQDVQNR 327
Query: 325 TFDCIAAQKHIGYSPVVSLEEGVSSTIQSF-SHLARDSSL 363
+ +G++P + ++ + +++ H+A +L
Sbjct: 328 VPKIENTMQELGWAPQFTFDDALRQIFEAYRGHVADARAL 367
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 2e-07
Identities = 20/122 (16%), Positives = 47/122 (38%), Gaps = 30/122 (24%)
Query: 18 GFVGRSLVLRLLELG----KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVR 73
G + R ++ +L + R P++ + P ++ DV
Sbjct: 33 GQIARHVINQLADKQTIKQTLFAR----------QPAKIHKPYPT-----NSQIIMGDVL 77
Query: 74 DISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133
+ + +K+ ++G V+ L +D + A +V+ A + C V+RL++ +
Sbjct: 78 NHAALKQAMQGQDIVYAN----LTGED-------LDIQANSVIAAMKACDVKRLIFVLSL 126
Query: 134 DV 135
+
Sbjct: 127 GI 128
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} Length = 289 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 11/114 (9%), Positives = 35/114 (30%), Gaps = 18/114 (15%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ 77
G +G + + + + + + Q+D +
Sbjct: 10 GHLGTHITNQAIANHIDHFHIGVR------NVEKVPDDWRGK-----VSVRQLDYFNQES 58
Query: 78 IKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131
+ + +G TV ++ + + + +N+V A ++ V +++
Sbjct: 59 MVEAFKGMDTVVFIPSIIHPSFKR-------IPEVENLVYAAKQSGVAHIIFIG 105
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Length = 308 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 2e-06
Identities = 35/255 (13%), Positives = 81/255 (31%), Gaps = 45/255 (17%)
Query: 18 GFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD 74
G++GR + L+LG +VR + + ++ L +S + A + D
Sbjct: 14 GYIGRHVAKASLDLGHPTFLLVR----ESTASSNSEKAQLL--ESFKASGANIVHGSIDD 67
Query: 75 ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134
+ + + ++ V + + ++ N++ A +E + + S
Sbjct: 68 HASLVEAVKNVDVVISTVGS------------LQIESQVNIIKAIKEVGTVKRFFPSE-- 113
Query: 135 VVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPG 194
D + + ++KA+ + + SN F
Sbjct: 114 ---------FGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEG-----IPYTYVSSNCFAGY 159
Query: 195 DTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS-----RMVSVA 249
+ + A P I+G G F E++ +A+D + + +
Sbjct: 160 FLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTF---TIKAVDDPRTLNKTLYLR 216
Query: 250 GMAFFITNLEPIKFW 264
A ++ E + W
Sbjct: 217 LPANTLSLNELVALW 231
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 3e-06
Identities = 50/311 (16%), Positives = 83/311 (26%), Gaps = 65/311 (20%)
Query: 18 GFVGRSLVLRLLELGK------CIVRVTDSTQSLQ------LDPSESNSLLPDSLSSGRA 65
GF+GR LVL LL C+VR + + L++ R
Sbjct: 83 GFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRL 142
Query: 66 EYHQVDVR------DISQIKKVLEGASTVF----------YVDATDLNTDDFYNCYMIIV 109
E D D +++ E + Y + N V
Sbjct: 143 EVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAFPYHELFGPN-----------V 191
Query: 110 QGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL------ 163
G ++ K++ Y STADV D + + +
Sbjct: 192 AGTAELIRIALTTKLKPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVDGGWAGGYGT 251
Query: 164 -KAQAEALVLFANNIDGLLTCALRPSNVFGPGD-------TQLVPLLVNLAK-------- 207
K E L+ AN++ L R + + V +V
Sbjct: 252 SKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLSLMATGIAPRS 311
Query: 208 PGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN--LEPIKFWD 265
D V VA A A + + + N + I +
Sbjct: 312 FYEPDSEGNRQRAHFDGLPVTFVAEAIAVLG-ARVAGSSLAGFATYHVMNPHDDGIGLDE 370
Query: 266 FLSIILEGLGY 276
++ ++E GY
Sbjct: 371 YVDWLIE-AGY 380
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 3e-06
Identities = 59/351 (16%), Positives = 109/351 (31%), Gaps = 54/351 (15%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ 77
GF G L L L +G V L SL + + + D+RD ++
Sbjct: 19 GFKGGWLSLWLQTMG---ATVK----GYSLTAPTVPSLFETARVADGMQSEIGDIRDQNK 71
Query: 78 IKKVLEGA--STVFYVDATDLNTD---DFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132
+ + + VF++ A L + Y V G ++ A R + V N T
Sbjct: 72 LLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNIT 131
Query: 133 ADVVFDGSHDIHNGDETL----TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCAL 185
+D +D I E + +L + F G +
Sbjct: 132 SDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATV 191
Query: 186 RPSNVFGPGDTQLVPLLVNLAKPGWTK--FIIGSGENMSDFTYVENVAHAHVCAAEALDS 243
R NV G GD L ++ ++ + II + + + +V ++ A+ L +
Sbjct: 192 RAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGYLLLAQKLYT 251
Query: 244 RMVSVAGMAF-FITNLE-PIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEK 301
A + F N + + +++ G + + HE
Sbjct: 252 DGAEYAE-GWNFGPNDADATPVKNIVEQMVKYWG----------EGASWQLDGNAHPHEA 300
Query: 302 LGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQ 352
L+ L DC A+ +G+ P +L + +
Sbjct: 301 HYLK-----L---------------DCSKAKMQLGWHPRWNLNTTLEYIVG 331
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Length = 313 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 6e-06
Identities = 35/258 (13%), Positives = 75/258 (29%), Gaps = 34/258 (13%)
Query: 12 VVLNGRGFVGRSLVLRLLELGK---CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+++ G G++G+ +V + LG + R + + +L G A+
Sbjct: 8 LIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNI------DKVQMLLYFKQLG-AKLI 60
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
+ + D ++ L+ V A + + + +V A +E +
Sbjct: 61 EASLDDHQRLVDALKQVDVVISALAGGVLSHH--------ILEQLKLVEAIKEAGNIKRF 112
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
S F G F D +A A + + +
Sbjct: 113 LPSE----F-GMDPDIMEHALQPGSITFIDKRKVRRAIEAA---------SIPYTYVSSN 158
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAH--AHVCAAEALDSRMV 246
G L L ++ P I G G + ++V ++ +
Sbjct: 159 MFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTM 218
Query: 247 SVAGMAFFITNLEPIKFW 264
+ ++ E I+ W
Sbjct: 219 YIRPPMNILSQKEVIQIW 236
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 56/392 (14%), Positives = 114/392 (29%), Gaps = 87/392 (22%)
Query: 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV 70
++L GF+G L RLL V LD + L+ + +
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEVYG--------LDIGSDA--ISRFLNHPHFHFVEG 52
Query: 71 DVRDISQIKKVLEG-----------ASTVFY----VDATDLNTDDFYNCYMIIVQGAKNV 115
D+ S+ + A+ + Y + +L+ + +
Sbjct: 53 DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELD-----------FEENLRI 101
Query: 116 VTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCC---------WKFQDLMC--DLK 164
+ C + + +R+++ ST++V G DE + W K
Sbjct: 102 IRYCVKYR-KRIIFPSTSEVY--GMCSDKYFDEDHSNLIVGPVNKPRW------IYSVSK 152
Query: 165 AQAEALVLFANNIDGLLTCALRPSNVFGP----------GDTQLVPLLVNLAKPGWTKFI 214
+ ++ +GL RP N GP G ++ + L+ G +
Sbjct: 153 QLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKL 212
Query: 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP-IKFWDFLSIILEG 273
I G+ FT + + A +++ G I N E + ++L
Sbjct: 213 IDGGKQKRCFTDIRDGIEALY---RIIENAGNRCDGEIINIGNPENEASIEELGEMLLAS 269
Query: 274 LGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQK 333
P + ++ S S R A +
Sbjct: 270 FEKHPLRHHFPPFAGFRVV----------------ESSSYYGKGYQDVEHRKPSIRNAHR 313
Query: 334 HIGYSPVVSLEEGVSSTIQSF-SHLARDSSLA 364
+ + P + ++E + T+ F + +
Sbjct: 314 CLDWEPKIDMQETIDETLDFFLRTVDLTDKPS 345
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Length = 307 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 3e-05
Identities = 34/261 (13%), Positives = 77/261 (29%), Gaps = 44/261 (16%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
++L G +GR +V ++ G + T + ++ + D+ S + D
Sbjct: 6 LILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELI--DNYQSLGVILLEGD 63
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131
+ D + K ++ V + A ++++ ++ A +E + + S
Sbjct: 64 INDHETLVKAIKQVDIV--ICAAG----------RLLIEDQVKIIKAIKEAGNVKKFFPS 111
Query: 132 TADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS--- 188
D + + + KA ++ G+ L
Sbjct: 112 -----------EFGLDVDRHDAVEPVRQVFEEKASIRRVIEAE----GVPYTYLCCHAFT 156
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS----- 243
F Q + + I+G G + +V A +
Sbjct: 157 GYFLRNLAQ--LDATDPPRDKVV--ILGDGNVKGAYVTEADVGTF---TIRAANDPNTLN 209
Query: 244 RMVSVAGMAFFITNLEPIKFW 264
+ V + ++T E I W
Sbjct: 210 KAVHIRLPKNYLTQNEVIALW 230
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* Length = 352 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 21/133 (15%), Positives = 42/133 (31%), Gaps = 26/133 (19%)
Query: 8 PRTCVVLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGR 64
+T V+ G G SL+ +G + V + +L +
Sbjct: 5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEEL------------QAIPN 52
Query: 65 AEYHQVDVRD-ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC- 122
Q + + + + + EGA F T D + K++ A +
Sbjct: 53 VTLFQGPLLNNVPLMDTLFEGAHLAFIN--TTSQAGD-------EIAIGKDLADAAKRAG 103
Query: 123 KVRRLVYNSTADV 135
++ +Y+S D
Sbjct: 104 TIQHYIYSSMPDH 116
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D Length = 287 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 22/131 (16%), Positives = 43/131 (32%), Gaps = 27/131 (20%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELG-----KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGR 64
+ V G +G ++ LL+ IVR + ++++L
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVR----------NVEKASTLADQG----- 46
Query: 65 AEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKV 124
E D ++K G S + ++ + ++ NVV A R+ V
Sbjct: 47 VEVRHGDYNQPESLQKAFAGVSKLLFISGPHYDNTL-------LIVQHANVVKAARDAGV 99
Query: 125 RRLVYNSTADV 135
+ + Y A
Sbjct: 100 KHIAYTGYAFA 110
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 6e-05
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 4/63 (6%)
Query: 179 GLLTCALRPSNVFGP-GDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCA 237
+ +LR +NV GP +P K G F + + DF + + +
Sbjct: 175 DVPVVSLRLANVTGPRLAIGPIPTFYKRLKAGQKCFC---SDTVRDFLDMSDFLAIADLS 231
Query: 238 AEA 240
+
Sbjct: 232 LQE 234
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 27/134 (20%), Positives = 49/134 (36%), Gaps = 30/134 (22%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAE------ 66
+ G G +G +L+ L G I+ + D+ ++G+ E
Sbjct: 25 ITGGAGCLGSNLIEHWLPQGHEILVI-------------------DNFATGKREVLPPVA 65
Query: 67 ---YHQVDVRDISQIKKVLEGAS--TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRE 121
+ V D +++ + V + A + DD+ VQG+ NV A +
Sbjct: 66 GLSVIEGSVTDAGLLERAFDSFKPTHVVHSAAAYKDPDDWAEDAATNVQGSINVAKAASK 125
Query: 122 CKVRRLVYNSTADV 135
V+RL+ TA
Sbjct: 126 AGVKRLLNFQTALC 139
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* Length = 286 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 34/134 (25%)
Query: 18 GFVGRSLVLRLLELGK-----CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV 72
G +G ++ L++ IVR +P+++ +L Q D
Sbjct: 9 GQLGHYVIESLMKTVPASQIVAIVR----------NPAKAQALAAQG-----ITVRQADY 53
Query: 73 RDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS- 131
D + + L+G + + ++++ +NV+ A + V+ + Y S
Sbjct: 54 GDEAALTSALQGVEKLLLISSSEVGQR---------APQHRNVINAAKAAGVKFIAYTSL 104
Query: 132 ----TADVVFDGSH 141
T+ + H
Sbjct: 105 LHADTSPLGLADEH 118
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 73/385 (18%), Positives = 117/385 (30%), Gaps = 97/385 (25%)
Query: 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGR 64
E + ++ G GFVG L +L+ G + V D+ +GR
Sbjct: 24 EKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVV-------------------DNFFTGR 64
Query: 65 A------------EYHQVDVRD-----ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMI 107
E DV + + QI + AS Y+ +
Sbjct: 65 KRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMY-------NPIKTLKT 117
Query: 108 IVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDET---LTCCWKFQDLMCDLK 164
G N++ + R L+ ST++V G ++H E + + K
Sbjct: 118 NTIGTLNMLGLAKRVGAR-LLLASTSEVY--GDPEVHPQSEDYWGHVNPIGPRACYDEGK 174
Query: 165 AQAEALVLFANNIDGLLTCALRPSNVFGPG----DTQLVPLLVNLAKPGWTKFIIGSGEN 220
AE + +G+ R N FGP D ++V + A G + GSG
Sbjct: 175 RVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQ 234
Query: 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPF 280
F YV ++ L + M S + N E +F +I +G
Sbjct: 235 TRAFQYVSDLV-------NGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEI 287
Query: 281 IKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLAS---RTRTFDCIAAQKHIGY 337
L A + R D A+ +G+
Sbjct: 288 QFLS----------------------------------EAQDDPQKRKPDIKKAKLMLGW 313
Query: 338 SPVVSLEEGVSSTIQSFSHLARDSS 362
PVV LEEG++ I F +
Sbjct: 314 EPVVPLEEGLNKAIHYFRKELEYQA 338
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Length = 346 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 3e-04
Identities = 31/263 (11%), Positives = 68/263 (25%), Gaps = 49/263 (18%)
Query: 12 VVLNGRGFVGRSLVLRLLELGK---CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
++ GF+G+ + L+ + + R S S + + +L A
Sbjct: 14 LIAGATGFIGQFVATASLDAHRPTYILARPGPR--------SPSKAKIFKALEDKGAIIV 65
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
+ + ++K+L+ V + + +V A + +
Sbjct: 66 YGLINEQEAMEKILKEHEIDIVVSTVGGES----------ILDQIALVKAMKAVGTIKRF 115
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN--IDGLLTCALR 186
S + + + G + + L ++ N +
Sbjct: 116 LPSEFGHDVNRADPVEPGLNMYREKRRVRQL---VEESGIPFTYICCNSIASWPYYNNIH 172
Query: 187 PSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS--- 243
PS V P D I G G + F ++ + +D
Sbjct: 173 PSEVLPPTDFFQ---------------IYGDGNVKAYFVAGTDIGKF---TMKTVDDVRT 214
Query: 244 --RMVSVAGMAFFITNLEPIKFW 264
+ V + E W
Sbjct: 215 LNKSVHFRPSCNCLNINELASVW 237
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 520 | |||
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 100.0 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 100.0 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 100.0 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 100.0 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 100.0 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 100.0 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 100.0 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 100.0 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 100.0 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 100.0 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 100.0 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 100.0 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 100.0 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 100.0 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 100.0 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 100.0 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 100.0 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 100.0 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 100.0 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 100.0 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 100.0 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 100.0 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 100.0 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 100.0 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 100.0 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 100.0 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 100.0 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 100.0 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 100.0 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 100.0 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 100.0 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 100.0 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 100.0 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 100.0 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 100.0 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 100.0 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 100.0 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 100.0 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 100.0 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 100.0 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 100.0 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 100.0 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 100.0 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 100.0 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 100.0 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 100.0 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 100.0 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 100.0 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 100.0 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 100.0 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 100.0 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 100.0 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 100.0 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 100.0 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 100.0 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 100.0 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 100.0 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 100.0 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 100.0 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 100.0 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 100.0 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 100.0 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 100.0 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 99.98 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.98 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 99.97 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.97 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.97 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.97 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.97 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.96 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.96 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.96 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.96 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.96 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.95 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.95 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.95 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.95 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.95 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.94 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.94 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.92 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.92 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.91 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.91 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.9 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.9 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.9 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.9 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.9 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.89 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.89 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.89 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.89 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.88 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.88 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.88 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.88 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.88 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.88 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.88 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.88 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.87 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.87 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.87 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.87 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.87 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.87 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.86 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.86 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.86 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.86 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.86 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.86 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.86 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.86 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.86 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.86 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.86 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.86 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.86 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.86 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.86 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.86 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.86 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.86 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.86 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.85 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.85 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.85 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.85 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.85 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.85 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.85 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.85 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.85 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.85 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.85 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.85 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.85 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.85 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.85 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.84 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.84 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.84 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.84 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.84 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.84 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.84 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.84 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.84 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.84 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.84 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.84 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.84 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.84 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.84 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.84 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.84 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.84 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.83 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.83 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.83 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.83 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.83 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.83 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.83 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.83 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.83 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.83 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.83 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.83 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.83 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.83 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.83 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.83 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.83 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.83 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.83 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.83 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.83 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.83 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.83 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.83 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.83 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.83 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.83 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.83 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.83 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.82 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.82 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.82 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.82 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.82 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.82 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.82 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.82 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.82 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.82 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.82 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.82 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.82 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.82 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.82 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.82 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.81 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.81 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.81 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.81 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.81 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.81 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.81 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.81 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.8 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.8 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.8 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.8 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.8 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.8 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.8 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.8 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.8 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.8 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.79 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.79 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.79 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.79 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.79 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.79 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.79 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.79 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.79 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.79 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.79 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.79 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.79 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.79 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.78 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.78 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.78 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.78 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.78 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.78 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.78 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.78 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.78 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.77 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.77 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.77 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.77 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.77 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.77 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.77 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.77 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.77 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.77 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.77 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.76 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.76 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.76 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.76 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.75 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.75 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.75 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.74 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.74 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.74 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.74 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.74 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.73 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.73 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.72 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.72 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.72 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.71 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.7 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.7 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.7 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.69 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.68 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.67 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.67 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.67 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.66 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.65 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.65 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.64 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.64 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.64 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.63 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.62 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.59 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.57 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.56 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.55 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.55 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.48 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.43 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.22 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.21 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.2 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.19 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.17 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.15 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 99.13 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 99.06 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 99.02 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 98.99 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 98.95 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 98.9 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 98.79 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.75 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 98.75 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.55 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.42 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 98.42 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.29 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 98.27 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.27 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.26 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.23 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.12 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 98.12 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.08 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 98.03 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.94 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.92 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 97.87 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 97.83 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 97.65 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.6 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.56 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.55 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 97.52 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.5 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.43 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.34 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 97.25 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.24 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 97.23 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.23 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 97.21 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 97.11 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 97.1 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 96.99 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 96.98 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 96.95 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 96.87 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 96.79 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 96.76 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 96.73 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 96.73 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 96.72 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 96.72 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 96.69 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 96.67 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 96.66 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 96.58 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 96.57 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 96.57 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 96.55 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 96.5 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 96.45 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.39 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.36 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.31 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 96.26 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 96.24 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 96.24 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 96.18 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 96.16 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 96.16 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 96.13 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 96.13 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 96.13 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 96.12 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 96.05 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 95.99 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 95.98 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 95.9 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 95.9 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 95.9 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 95.89 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 95.88 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 95.79 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 95.78 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.71 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.71 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 95.69 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 95.66 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 95.65 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 95.65 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 95.59 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 95.57 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 95.48 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 95.41 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 95.39 | |
| 3ax6_A | 380 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 95.34 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 95.31 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 95.3 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 95.26 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 95.24 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 95.23 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 95.22 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 95.2 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 95.15 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 95.1 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 95.09 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 95.05 | |
| 1kjq_A | 391 | GART 2, phosphoribosylglycinamide formyltransferas | 94.98 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 94.97 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 94.96 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 94.95 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 94.9 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 94.89 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 94.82 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 94.78 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 94.78 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 94.78 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 94.66 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 94.66 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 94.65 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 94.64 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 94.49 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 94.46 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 94.4 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 94.26 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 94.25 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 94.23 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 94.22 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 94.21 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 94.18 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 94.12 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 94.1 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 94.08 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 94.01 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 93.94 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 93.86 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 93.84 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 93.8 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 93.79 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 93.77 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 93.76 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 93.75 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 93.75 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 93.74 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 93.73 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 93.72 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 93.67 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 93.66 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 93.64 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 93.63 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 93.59 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 93.57 | |
| 2dwc_A | 433 | PH0318, 433AA long hypothetical phosphoribosylglyc | 93.52 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 93.46 | |
| 1rm4_O | 337 | Glyceraldehyde 3-phosphate dehydrogenase A; rossma | 93.23 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 93.18 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 93.12 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 93.12 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 93.07 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 93.06 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 93.05 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 93.04 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 93.02 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 92.97 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 92.94 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 92.9 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 92.74 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 92.72 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 92.67 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 92.67 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 92.6 | |
| 3cmm_A | 1015 | Ubiquitin-activating enzyme E1 1; UBA1, protein tu | 92.58 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 92.54 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 92.53 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 92.51 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 92.51 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 92.48 | |
| 1tt5_B | 434 | Ubiquitin-activating enzyme E1C isoform 1; cell cy | 92.45 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 92.4 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 92.39 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 92.38 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 92.37 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 92.34 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 92.33 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 92.21 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 92.2 | |
| 1tt5_A | 531 | APPBP1, amyloid protein-binding protein 1; cell cy | 92.13 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 92.11 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 92.1 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 92.06 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 92.05 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 92.05 |
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=381.07 Aligned_cols=310 Identities=17% Similarity=0.180 Sum_probs=252.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
+++|+||||||+||||++++++|+++|+ ++|+++|+... .+ ....+......++++++.+|++|.+++.+++++
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~---~~--~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 96 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTY---SG--NLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKE 96 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCT---TC--CGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEecccc---cc--chhhhhhhccCCCeEEEEcCCCCHHHHHHHHhh
Confidence 4568999999999999999999999983 36777655321 11 111223333346899999999999999999987
Q ss_pred --CCEEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCCh
Q 010005 85 --ASTVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDL 159 (520)
Q Consensus 85 --~D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~ 159 (520)
+|+|||+|+.. .+..++...+++|+.++.+++++|++.+++||||+||.++||... ...+.+|+. +..|.+.
T Consensus 97 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~~~~-~~~~~~E~~--~~~p~~~ 173 (346)
T 4egb_A 97 RDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLG-KTGRFTEET--PLAPNSP 173 (346)
T ss_dssp HTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGCCCC-SSCCBCTTS--CCCCCSH
T ss_pred cCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhCCCC-cCCCcCCCC--CCCCCCh
Confidence 99999999983 344678889999999999999999999999999999999998653 234778887 5688999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC--CchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHH
Q 010005 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCA 237 (520)
Q Consensus 160 Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~ 237 (520)
|+.+|..+|++++.+++++|++++++||+.+|||+.. ..++.++..+..|+++.++++|++.++|+|++|+|++++.+
T Consensus 174 Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 253 (346)
T 4egb_A 174 YSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQYPEKLIPLMVTNALEGKKLPLYGDGLNVRDWLHVTDHCSAIDVV 253 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCCEEETTSCCEECEEEHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCCCccchHHHHHHHHHcCCCceeeCCCCeEEeeEEHHHHHHHHHHH
Confidence 9999999999999998878999999999999999874 67888899999999888999999999999999999999999
Q ss_pred HHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHH
Q 010005 238 AEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIV 317 (520)
Q Consensus 238 ~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (520)
++ ....|++||+++++++++.|+++.+.+.+|.+.+.+.... ..+ .
T Consensus 254 ~~------~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~----------------------~~~-~----- 299 (346)
T 4egb_A 254 LH------KGRVGEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVT----------------------DRL-G----- 299 (346)
T ss_dssp HH------HCCTTCEEEECCSCCEEHHHHHHHHHHHHTCCGGGCEEEC----------------------C---C-----
T ss_pred Hh------cCCCCCEEEECCCCceeHHHHHHHHHHHhCCCcccccccC----------------------CCC-C-----
Confidence 98 2347889999999999999999999999998754222110 000 0
Q ss_pred HHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 318 QLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 318 ~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
....+.+|++|++++|||+|+++++|+|+++++||+++..
T Consensus 300 --~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~~~ 339 (346)
T 4egb_A 300 --HDRRYAINAEKMKNEFDWEPKYTFEQGLQETVQWYEKNEE 339 (346)
T ss_dssp --CCSCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCHH
T ss_pred --CcceeeccHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhh
Confidence 0124568999999999999999999999999999998654
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-46 Score=371.53 Aligned_cols=296 Identities=16% Similarity=0.156 Sum_probs=251.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCE
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~ 87 (520)
+|+||||||+||||+++++.|+++| ++|+++ .|++... . + .+++++.+|++ .+++.++++++|+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~--------~r~~~~~---~-~--~~~~~~~~Dl~-~~~~~~~~~~~d~ 65 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDG-NTPIIL--------TRSIGNK---A-I--NDYEYRVSDYT-LEDLINQLNDVDA 65 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEE--------ESCCC-----------CCEEEECCCC-HHHHHHHTTTCSE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCC-CEEEEE--------eCCCCcc---c-C--CceEEEEcccc-HHHHHHhhcCCCE
Confidence 5899999999999999999999999 599994 4442211 1 1 27899999999 9999999999999
Q ss_pred EEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHH
Q 010005 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQA 167 (520)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~ 167 (520)
|||+|+..... ++...+++|+.++.+++++|++.+++||||+||.++||... ..+.+|++ +..|.+.|+.+|..+
T Consensus 66 Vih~a~~~~~~-~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~vyg~~~--~~~~~E~~--~~~p~~~Y~~sK~~~ 140 (311)
T 3m2p_A 66 VVHLAATRGSQ-GKISEFHDNEILTQNLYDACYENNISNIVYASTISAYSDET--SLPWNEKE--LPLPDLMYGVSKLAC 140 (311)
T ss_dssp EEECCCCCCSS-SCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCCGG--GCSBCTTS--CCCCSSHHHHHHHHH
T ss_pred EEEccccCCCC-ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCC--CCCCCCCC--CCCCCchhHHHHHHH
Confidence 99999984433 78889999999999999999999999999999999997543 24678887 668899999999999
Q ss_pred HHHHHHhcCCCCceEEEEecCccccCCCC--CchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhccc
Q 010005 168 EALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRM 245 (520)
Q Consensus 168 E~~~~~~~~~~gi~~~ilRp~~vyGp~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~ 245 (520)
|++++.++.+.|++++++||+.+|||+.. ..++.++..+..|+++.+++++++.++|+|++|+|++++.+++ .
T Consensus 141 E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~-----~ 215 (311)
T 3m2p_A 141 EHIGNIYSRKKGLCIKNLRFAHLYGFNEKNNYMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALK-----Q 215 (311)
T ss_dssp HHHHHHHHHHSCCEEEEEEECEEECSCC--CCHHHHHHHHHHTCCCEEESSBCCCCEEEEEHHHHHHHHHHHTT-----C
T ss_pred HHHHHHHHHHcCCCEEEEeeCceeCcCCCCCCHHHHHHHHHHcCCCeEEecCCCeEEceEEHHHHHHHHHHHHh-----c
Confidence 99999998888999999999999999887 6888899999999998888999999999999999999999887 2
Q ss_pred ccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccceE
Q 010005 246 VSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRT 325 (520)
Q Consensus 246 ~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (520)
+ ..+++||+++++++++.|+++.+.+.+|.+.+....|.+ .+ .......
T Consensus 216 ~-~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~----------------------~~--------~~~~~~~ 264 (311)
T 3m2p_A 216 E-KVSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPN----------------------AN--------EGIHSSY 264 (311)
T ss_dssp T-TCCEEEEECCSCEECHHHHHHHHHHHTTCTTCEEECSSS----------------------BC--------CSCCCBC
T ss_pred C-CCCCeEEeCCCCcccHHHHHHHHHHHhCCCCcceecCCC----------------------CC--------CCcCcee
Confidence 3 378899999999999999999999999988665554421 00 0012567
Q ss_pred echHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhc
Q 010005 326 FDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (520)
Q Consensus 326 ~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~ 360 (520)
+|++|++++|||+|+++++|+++++++|+++..+.
T Consensus 265 ~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~~ 299 (311)
T 3m2p_A 265 MDSSKAKELLDFSTDYNFATAVEEIHLLMRGLDDV 299 (311)
T ss_dssp BCCHHHHHHSCCCCSCCHHHHHHHHHHHHCC----
T ss_pred cCHHHHHHHhCCCcccCHHHHHHHHHHHHHhcccC
Confidence 89999999999999999999999999999887654
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-46 Score=380.03 Aligned_cols=313 Identities=20% Similarity=0.240 Sum_probs=252.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCCCCCC---CCCcEEEEecCCCHHHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDSLS---SGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~-~~~l~~~~~---~~~v~~~~~Dl~d~~~l~~~l 82 (520)
++|+||||||+||||+++++.|+++| ++|+++++... +... ...+..... ..+++++.+|++|.+++.+++
T Consensus 24 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 98 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLLEKLLKLN-QVVIGLDNFST----GHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVM 98 (351)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSS----CCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHT
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCCC----CchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHh
Confidence 56899999999999999999999999 59999654321 0000 000000000 057899999999999999999
Q ss_pred cCCCEEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCCh
Q 010005 83 EGASTVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDL 159 (520)
Q Consensus 83 ~~~D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~ 159 (520)
+++|+|||+|+.. .+..++...+++|+.++.+++++|++.+++||||+||.++||.... .+.+|+. +..|.+.
T Consensus 99 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~--~~~~E~~--~~~p~~~ 174 (351)
T 3ruf_A 99 KGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPA--LPKVEEN--IGNPLSP 174 (351)
T ss_dssp TTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCC--SSBCTTC--CCCCCSH
T ss_pred cCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcCCCCC--CCCccCC--CCCCCCh
Confidence 9999999999972 2335677899999999999999999999999999999999976543 4678887 5688999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC------CchHHHHHHhcCCCceEEecCCCcccccccHHHHHHH
Q 010005 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHA 233 (520)
Q Consensus 160 Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~------~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~a 233 (520)
|+.+|..+|++++.++++.|++++++||+.+|||+.. .+++.++..+..++++.++++|++.++|+|++|+|++
T Consensus 175 Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a 254 (351)
T 3ruf_A 175 YAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQM 254 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCCCCcchhhHHHHHHHHHHcCCCcEEeCCCCeEEeeEEHHHHHHH
Confidence 9999999999999998878999999999999999864 4678888888888988899999999999999999999
Q ss_pred HHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCch
Q 010005 234 HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSA 313 (520)
Q Consensus 234 i~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (520)
++.+++. .+...+++||+++++++++.|+++.+.+.+|.+......+... .. ..+
T Consensus 255 ~~~~~~~----~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~--------------~~----~~~--- 309 (351)
T 3ruf_A 255 NILSALA----KDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKY--------------RE----FRS--- 309 (351)
T ss_dssp HHHHHTC----CGGGCSEEEEESCSCCEEHHHHHHHHHHHHHTTCCC-----EE--------------EC----CCT---
T ss_pred HHHHHhh----ccccCCCEEEeCCCCcccHHHHHHHHHHHhCcccccccccccc--------------cC----CCC---
Confidence 9998872 1356789999999999999999999999999854332222100 00 000
Q ss_pred HHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhh
Q 010005 314 CYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (520)
Q Consensus 314 ~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~ 358 (520)
. ......+|++|++++|||+|+++++|+++++++||+++.
T Consensus 310 -~----~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~ 349 (351)
T 3ruf_A 310 -G----DVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRFL 349 (351)
T ss_dssp -T----CCSBCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred -C----ccceeeeCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhh
Confidence 0 012567899999999999999999999999999998864
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=375.89 Aligned_cols=296 Identities=20% Similarity=0.195 Sum_probs=253.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
.++|+||||||+||||+++++.|+++| ++|+++|+ .+.. .+++++.+|+.|.+++.++++++
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r--------~~~~---------~~~~~~~~Dl~d~~~~~~~~~~~ 78 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQG-RTVRGFDL--------RPSG---------TGGEEVVGSLEDGQALSDAIMGV 78 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTT-CCEEEEES--------SCCS---------SCCSEEESCTTCHHHHHHHHTTC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCC-CEEEEEeC--------CCCC---------CCccEEecCcCCHHHHHHHHhCC
Confidence 456899999999999999999999999 59999544 3321 36789999999999999999999
Q ss_pred CEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHH
Q 010005 86 STVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (520)
Q Consensus 86 D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK 164 (520)
|+|||+|+. ..........+++|+.++.+++++|++.+++||||+||.++||.......+.+|+. +..|.+.|+.+|
T Consensus 79 d~vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~--~~~~~~~Y~~sK 156 (347)
T 4id9_A 79 SAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRPEFLPVTEDH--PLCPNSPYGLTK 156 (347)
T ss_dssp SEEEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGTTTTSCSSSSBCTTS--CCCCCSHHHHHH
T ss_pred CEEEECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHHhCCCCCCCCCcCCCC--CCCCCChHHHHH
Confidence 999999998 33334458899999999999999999999999999999999987544555788887 568899999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEecCccc-------------cCCC-------------CCchHHHHHHhcCCCceEEecCC
Q 010005 165 AQAEALVLFANNIDGLLTCALRPSNVF-------------GPGD-------------TQLVPLLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 165 ~~~E~~~~~~~~~~gi~~~ilRp~~vy-------------Gp~~-------------~~~~~~l~~~~~~g~~~~i~g~g 218 (520)
..+|++++.++.+.|++++++||+.+| ||++ ...++.++..+..|+++.++++|
T Consensus 157 ~~~E~~~~~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 236 (347)
T 4id9_A 157 LLGEELVRFHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDIGEPSHILARN 236 (347)
T ss_dssp HHHHHHHHHHHHHSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHHHHHHHHHHHTCHHHHHHHHHHCCSSCCEEEEEC
T ss_pred HHHHHHHHHHHHhcCCceEEEccceEeecccccccccccCCCCcccccccccccccchhHHHHHHHHHHcCCCeEEeCCC
Confidence 999999999988889999999999999 8873 45677888889999988899999
Q ss_pred Cccccc----ccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHH
Q 010005 219 ENMSDF----TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILL 294 (520)
Q Consensus 219 ~~~~~~----i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~ 294 (520)
++.++| +|++|+|++++.+++ .+...+++||+++++++++.|+++.+.+.+|.+.+...+|.
T Consensus 237 ~~~~~~~~~~i~v~Dva~ai~~~~~-----~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~--------- 302 (347)
T 4id9_A 237 ENGRPFRMHITDTRDMVAGILLALD-----HPEAAGGTFNLGADEPADFAALLPKIAALTGLPIVTVDFPG--------- 302 (347)
T ss_dssp TTCCBCEECEEEHHHHHHHHHHHHH-----CGGGTTEEEEESCSSCEEHHHHHHHHHHHHCCCEEEEECSS---------
T ss_pred CcccCCccCcEeHHHHHHHHHHHhc-----CcccCCCeEEECCCCcccHHHHHHHHHHHhCCCCceeeCCC---------
Confidence 999999 999999999999998 34466899999999999999999999999998765554441
Q ss_pred HHHHHHHhcccccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhc
Q 010005 295 VKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (520)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~ 360 (520)
.+ ....+|++|++++|||+|+++++|+|+++++||+++...
T Consensus 303 --------------~~-----------~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~~ 343 (347)
T 4id9_A 303 --------------DG-----------VYYHTSNERIRNTLGFEAEWTMDRMLEEAATARRQRLAK 343 (347)
T ss_dssp --------------CC-----------CBCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC-
T ss_pred --------------cc-----------cccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhhhc
Confidence 11 145789999999999999999999999999999987643
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=380.42 Aligned_cols=319 Identities=16% Similarity=0.187 Sum_probs=249.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhc-CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCC-CHHHHHHHHc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVR-DISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~-g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~-d~~~l~~~l~ 83 (520)
+++|+||||||+||||++|+++|+++ | ++|+++++ +.. ........++++++.+|++ |.+.+.++++
T Consensus 22 m~~~~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r--------~~~--~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~ 90 (372)
T 3slg_A 22 MKAKKVLILGVNGFIGHHLSKRILETTD-WEVFGMDM--------QTD--RLGDLVKHERMHFFEGDITINKEWVEYHVK 90 (372)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHHSS-CEEEEEES--------CCT--TTGGGGGSTTEEEEECCTTTCHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCC-CEEEEEeC--------Chh--hhhhhccCCCeEEEeCccCCCHHHHHHHhc
Confidence 56789999999999999999999999 8 59999554 332 1122223468999999999 9999999999
Q ss_pred CCCEEEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccC-----CCC
Q 010005 84 GASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC-----CWK 155 (520)
Q Consensus 84 ~~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~-----~~~ 155 (520)
++|+|||+|+... ...++...+++|+.++.+++++|++.+ +||||+||.++||.... .+.+|+++. ...
T Consensus 91 ~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~v~~SS~~vyg~~~~--~~~~e~~~~~~~~p~~~ 167 (372)
T 3slg_A 91 KCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSEVYGMCAD--EQFDPDASALTYGPINK 167 (372)
T ss_dssp HCSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT-CEEEEECCGGGGBSCCC--SSBCTTTCCEEECCTTC
T ss_pred cCCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC-CcEEEeCcHHHhCCCCC--CCCCccccccccCCCCC
Confidence 9999999999732 234677899999999999999999999 99999999999986433 245555421 115
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCC----------chHHHHHHhcCCCceEEecCCCcccccc
Q 010005 156 FQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ----------LVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (520)
Q Consensus 156 p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~----------~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (520)
|.+.|+.+|..+|++++.++.+ |++++++||+.+|||++.. +++.++..+..|+++.++++|++.++|+
T Consensus 168 p~~~Y~~sK~~~E~~~~~~~~~-g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i 246 (372)
T 3slg_A 168 PRWIYACSKQLMDRVIWGYGME-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFT 246 (372)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTT-TCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTCCEEEGGGGCCEEECE
T ss_pred CCCcHHHHHHHHHHHHHHHHHC-CCCEEEEccccccCCCcccccccccccchHHHHHHHHHHcCCCcEEeCCCceEEEEE
Confidence 6779999999999999999987 9999999999999998643 6788888888899888999999999999
Q ss_pred cHHHHHHHHHHHHHhhhccccc--CCCceEEEeCC-CCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHh
Q 010005 226 YVENVAHAHVCAAEALDSRMVS--VAGMAFFITNL-EPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKL 302 (520)
Q Consensus 226 ~v~Dva~ai~~~~~~~~~~~~~--~~g~~yni~~~-~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~ 302 (520)
|++|+|++++.+++. +. ..+++||++++ +++|++|+++.+.+.+|.+.+....|.. .
T Consensus 247 ~v~Dva~a~~~~~~~-----~~~~~~~~~~ni~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~---------------~ 306 (372)
T 3slg_A 247 YVDDGISALMKIIEN-----SNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKR---------------V 306 (372)
T ss_dssp EHHHHHHHHHHHHHC-----GGGTTTTEEEEECCTTCEEEHHHHHHHHHHHHHHCTTTHHHHHT---------------C
T ss_pred EHHHHHHHHHHHHhc-----ccCcCCCceEEeCCCCCCccHHHHHHHHHHHhCCCccccccccc---------------c
Confidence 999999999999982 33 57899999994 8999999999999999976543322200 0
Q ss_pred cccccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhc
Q 010005 303 GLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (520)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~ 360 (520)
.........+... .........+|++|++++|||+|+++++|+|+++++||+++...
T Consensus 307 ~~~~~~~~~~~~~-~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 363 (372)
T 3slg_A 307 KLVETTSGAYYGN-GYQDVQNRVPKIENTMQELGWAPQFTFDDALRQIFEAYRGHVAD 363 (372)
T ss_dssp CEEEC--------------CCCCBCCHHHHHHHTCCCCCCHHHHHHHHHHHHTTCHHH
T ss_pred eeeeccccccccC-CccccceeecCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 0000000000000 00112356779999999999999999999999999999886543
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=363.70 Aligned_cols=301 Identities=21% Similarity=0.214 Sum_probs=242.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCE
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~ 87 (520)
||+||||||+||||++++++|+++| +.|.+ ..|+..... ....+++++.+|++| +++.++++++|+
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g-~~v~~--------~~~~~~~~~----~~~~~~~~~~~Dl~~-~~~~~~~~~~d~ 66 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESN-EIVVI--------DNLSSGNEE----FVNEAARLVKADLAA-DDIKDYLKGAEE 66 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTS-CEEEE--------CCCSSCCGG----GSCTTEEEECCCTTT-SCCHHHHTTCSE
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC-CEEEE--------EcCCCCChh----hcCCCcEEEECcCCh-HHHHHHhcCCCE
Confidence 4789999999999999999999999 46655 223322111 113568999999999 889999999999
Q ss_pred EEEcccC---CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHH
Q 010005 88 VFYVDAT---DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (520)
Q Consensus 88 Vih~aa~---~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK 164 (520)
|||+|+. ..+..++...+++|+.++.+++++|++.+++||||+||.++||... ..+.+|+. +..|.+.|+.+|
T Consensus 67 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~vyg~~~--~~~~~E~~--~~~~~~~Y~~sK 142 (313)
T 3ehe_A 67 VWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEAK--VIPTPEDY--PTHPISLYGASK 142 (313)
T ss_dssp EEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGGGCSCS--SSSBCTTS--CCCCCSHHHHHH
T ss_pred EEECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCchHHhCcCC--CCCCCCCC--CCCCCCHHHHHH
Confidence 9999996 3455788999999999999999999999999999999999997643 34677877 567889999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEecCccccCCCC-CchHHHHHHhcCC-CceEEecCCCcccccccHHHHHHHHHHHHHhhh
Q 010005 165 AQAEALVLFANNIDGLLTCALRPSNVFGPGDT-QLVPLLVNLAKPG-WTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242 (520)
Q Consensus 165 ~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~-~~~~~l~~~~~~g-~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~ 242 (520)
..+|.+++.++.++|++++++||+.+|||++. ..++.++..+..+ .++.++++|++.++|+|++|+|++++.+++
T Consensus 143 ~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~--- 219 (313)
T 3ehe_A 143 LACEALIESYCHTFDMQAWIYRFANVIGRRSTHGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLR--- 219 (313)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSCEESTTCCCSHHHHHHHHHHHCTTEEEESTTSCCEECCEEHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHhcCCCEEEEeeccccCcCCCcChHHHHHHHHHcCCCceEEeCCCCeEEeEEEHHHHHHHHHHHhc---
Confidence 99999999998888999999999999999875 4566666665554 666788999999999999999999998887
Q ss_pred cccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhcc
Q 010005 243 SRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASR 322 (520)
Q Consensus 243 ~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (520)
+...+++||++++++++++|+++.+.+.+|.+.+....|... ..... ..
T Consensus 220 ---~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~------------------------~~~~~----~~ 268 (313)
T 3ehe_A 220 ---GDERVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDR------------------------GWKGD----VP 268 (313)
T ss_dssp ---CCSSEEEEECCCSCCEEHHHHHHHHHHHTTCCCEEEEC---------------------------------------
T ss_pred ---cCCCCceEEECCCCCeeHHHHHHHHHHHhCCCCceEECCCcc------------------------CCccc----cc
Confidence 456678999999999999999999999999875432222100 00000 01
Q ss_pred ceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhcc
Q 010005 323 TRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDS 361 (520)
Q Consensus 323 ~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~~ 361 (520)
...+|++|+++ |||+|+++++|+|+++++||+++.+.+
T Consensus 269 ~~~~d~~k~~~-lG~~p~~~~~e~l~~~~~~~~~~~~~~ 306 (313)
T 3ehe_A 269 VMLLSIEKLKR-LGWKPRYNSEEAVRMAVRDLVEDLDEE 306 (313)
T ss_dssp -CCBCCHHHHH-HTCCCSCCHHHHHHHHHHHHHHHHHC-
T ss_pred eeccCHHHHHH-cCCCCCCCHHHHHHHHHHHHHhCcccc
Confidence 35679999965 999999999999999999999987765
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=367.25 Aligned_cols=319 Identities=15% Similarity=0.170 Sum_probs=245.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
++|+||||||+||||++++++|+++| ++|+++++ ++.+. +.+...+++++.+|+.|.+++.++++++|
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r--------~~~~~---~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d 79 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAG-HDLVLIHR--------PSSQI---QRLAYLEPECRVAEMLDHAGLERALRGLD 79 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEEC--------TTSCG---GGGGGGCCEEEECCTTCHHHHHHHTTTCS
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEec--------ChHhh---hhhccCCeEEEEecCCCHHHHHHHHcCCC
Confidence 45799999999999999999999999 59999554 33211 11122368999999999999999999999
Q ss_pred EEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCC----CChHH
Q 010005 87 TVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF----QDLMC 161 (520)
Q Consensus 87 ~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p----~~~Y~ 161 (520)
+|||+|+. ..+..++...+++|+.++.+++++|++.+++||||+||.++|+.......+ +|++ +..| .+.|+
T Consensus 80 ~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~-~E~~--~~~p~~~~~~~Y~ 156 (342)
T 2x4g_A 80 GVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYAMPRHPQGLPG-HEGL--FYDSLPSGKSSYV 156 (342)
T ss_dssp EEEEC------------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGGGSCCCTTSSCB-CTTC--CCSSCCTTSCHHH
T ss_pred EEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHhhCcCCCCCCC-CCCC--CCCccccccChHH
Confidence 99999997 333467788999999999999999999999999999999999765432234 7777 4566 88999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEecCccccCCC-C-CchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHH
Q 010005 162 DLKAQAEALVLFANNIDGLLTCALRPSNVFGPGD-T-QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 162 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~-~-~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~ 239 (520)
.+|..+|++++.++.+ |++++++||+.+|||+. + . ++.++..+..|....+ |++.++|+|++|+|++++.+++
T Consensus 157 ~sK~~~e~~~~~~~~~-g~~~~ilrp~~v~g~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~i~v~Dva~~~~~~~~ 231 (342)
T 2x4g_A 157 LCKWALDEQAREQARN-GLPVVIGIPGMVLGELDIGPT-TGRVITAIGNGEMTHY---VAGQRNVIDAAEAGRGLLMALE 231 (342)
T ss_dssp HHHHHHHHHHHHHHHT-TCCEEEEEECEEECSCCSSCS-TTHHHHHHHTTCCCEE---ECCEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc-CCcEEEEeCCceECCCCcccc-HHHHHHHHHcCCCccc---cCCCcceeeHHHHHHHHHHHHh
Confidence 9999999999998876 99999999999999987 3 3 6667777777776544 5788999999999999999998
Q ss_pred hhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHH
Q 010005 240 ALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQL 319 (520)
Q Consensus 240 ~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (520)
. +. .|++||+++++ +++.|+++.+.+.+|.+.+. .+|.+.....+.+.+++.+..+ ..+++.+.....
T Consensus 232 ~-----~~-~g~~~~v~~~~-~s~~e~~~~i~~~~g~~~~~-~~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 299 (342)
T 2x4g_A 232 R-----GR-IGERYLLTGHN-LEMADLTRRIAELLGQPAPQ-PMSMAMARALATLGRLRYRVSG----QLPLLDETAIEV 299 (342)
T ss_dssp H-----SC-TTCEEEECCEE-EEHHHHHHHHHHHHTCCCCE-EECHHHHHHHHHHHHC--------------------CC
T ss_pred C-----CC-CCceEEEcCCc-ccHHHHHHHHHHHhCCCCCC-cCCHHHHHHHHHHHHHHHHhhC----CCCCCCHHHHHH
Confidence 2 22 38899999999 99999999999999998776 8898877776666665544333 123333333333
Q ss_pred hccceEechHHHHHhcCC-CCCCCHHHHHHHHHHHHHhhh
Q 010005 320 ASRTRTFDCIAAQKHIGY-SPVVSLEEGVSSTIQSFSHLA 358 (520)
Q Consensus 320 ~~~~~~~d~~ka~~~LG~-~p~~sleegi~~~~~~~~~~~ 358 (520)
+.....+|++|++++||| +| ++++|+++++++||+++.
T Consensus 300 ~~~~~~~d~~k~~~~lG~~~p-~~~~~~l~~~~~~~~~~g 338 (342)
T 2x4g_A 300 MAGGQFLDGRKAREELGFFST-TALDDTLLRAIDWFRDNG 338 (342)
T ss_dssp TTCCCCBCCHHHHHHHCCCCC-SCHHHHHHHHHHHHHHTT
T ss_pred HhcCcccChHHHHHhCCCCCC-CCHHHHHHHHHHHHHHcC
Confidence 345678899999999999 99 899999999999998753
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-44 Score=368.10 Aligned_cols=309 Identities=20% Similarity=0.206 Sum_probs=250.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHh--cCCcEEEEecCCcccccC--CCCCCCCCCCCCCCCCcEEEEecCCCHHHHHH
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLE--LGKCIVRVTDSTQSLQLD--PSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~--~g~~~V~~~D~~~~~~l~--r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (520)
.+++|+||||||+||||+++++.|++ +| ++|+++|+....... +..............+++++.+|++|.+++.+
T Consensus 7 ~~~~~~vlVTGatG~IG~~l~~~L~~~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 85 (362)
T 3sxp_A 7 ELENQTILITGGAGFVGSNLAFHFQENHPK-AKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRR 85 (362)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHCTT-SEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHH
T ss_pred hcCCCEEEEECCCCHHHHHHHHHHHhhCCC-CeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHH
Confidence 34578999999999999999999999 89 599997764320000 00000000011233467999999999999999
Q ss_pred H-HcCCCEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCC
Q 010005 81 V-LEGASTVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQD 158 (520)
Q Consensus 81 ~-l~~~D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~ 158 (520)
+ ..++|+|||+||. ..+..++...+++|+.++.+++++|++.+++ |||+||.++||.... +.+|+. +..|.+
T Consensus 86 ~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~V~~SS~~vyg~~~~---~~~E~~--~~~p~~ 159 (362)
T 3sxp_A 86 LEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK-VIYASSAGVYGNTKA---PNVVGK--NESPEN 159 (362)
T ss_dssp HTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE-EEEEEEGGGGCSCCS---SBCTTS--CCCCSS
T ss_pred hhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc-EEEeCcHHHhCCCCC---CCCCCC--CCCCCC
Confidence 9 7899999999997 3355788999999999999999999999986 999999999976543 778887 668899
Q ss_pred hHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC------CchHHHHHHhcCCCceEEecCCCcccccccHHHHHH
Q 010005 159 LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAH 232 (520)
Q Consensus 159 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~------~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ 232 (520)
+|+.+|..+|++++.++.+ ++++++||+++|||+.. .+++.++..+..+.++.++++|++.++|+|++|+|+
T Consensus 160 ~Y~~sK~~~E~~~~~~~~~--~~~~~lR~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~ 237 (362)
T 3sxp_A 160 VYGFSKLCMDEFVLSHSND--NVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQ 237 (362)
T ss_dssp HHHHHHHHHHHHHHHTTTT--SCEEEEEECSEESTTCGGGGGGSCHHHHHHHHHHTTSEEECSGGGCCEEECEEHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcc--CCEEEEEeCceeCcCCCCCCcchhHHHHHHHHHHhCCCeEEECCCCeEEccEEHHHHHH
Confidence 9999999999999999875 89999999999999874 567888888999998888899999999999999999
Q ss_pred HHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCc
Q 010005 233 AHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLS 312 (520)
Q Consensus 233 ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (520)
+++.+++ ....| +||+++++++++.|+++.+.+.+| +.+....|.+.
T Consensus 238 ai~~~~~------~~~~g-~~~i~~~~~~s~~e~~~~i~~~~g-~~~~~~~~~~~------------------------- 284 (362)
T 3sxp_A 238 ANVKAMK------AQKSG-VYNVGYSQARSYNEIVSILKEHLG-DFKVTYIKNPY------------------------- 284 (362)
T ss_dssp HHHHHTT------CSSCE-EEEESCSCEEEHHHHHHHHHHHHC-CCEEECCC----------------------------
T ss_pred HHHHHHh------cCCCC-EEEeCCCCCccHHHHHHHHHHHcC-CCceEECCCCC-------------------------
Confidence 9999887 33456 999999999999999999999999 65544444220
Q ss_pred hHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhc
Q 010005 313 ACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (520)
Q Consensus 313 ~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~ 360 (520)
........+|++|+++.|||+|+++++|+++++++||++....
T Consensus 285 -----~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 327 (362)
T 3sxp_A 285 -----AFFQKHTQAHIEPTILDLDYTPLYDLESGIKDYLPHIHAIFKG 327 (362)
T ss_dssp ---------CCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHTCC---
T ss_pred -----cCcccceecCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 0112356789999999999999999999999999999987654
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=362.85 Aligned_cols=305 Identities=24% Similarity=0.295 Sum_probs=243.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCEE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~V 88 (520)
|+||||||+||||++++++|+++| ++|+++| |.+... ......+++++.+|+.|.+ +.+++++ |+|
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~--------r~~~~~---~~~~~~~~~~~~~Dl~d~~-~~~~~~~-d~v 66 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELG-YEVVVVD--------NLSSGR---REFVNPSAELHVRDLKDYS-WGAGIKG-DVV 66 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEC--------CCSSCC---GGGSCTTSEEECCCTTSTT-TTTTCCC-SEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCC-CEEEEEe--------CCCCCc---hhhcCCCceEEECccccHH-HHhhcCC-CEE
Confidence 689999999999999999999999 5999954 433211 1112457899999999998 8888888 999
Q ss_pred EEcccC---CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHH
Q 010005 89 FYVDAT---DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKA 165 (520)
Q Consensus 89 ih~aa~---~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~ 165 (520)
||+|+. ..+..++...+++|+.++.+++++|++.+++||||+||.++||... ..+.+|+. +..|.+.|+.+|.
T Consensus 67 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg~~~--~~~~~e~~--~~~p~~~Y~~sK~ 142 (312)
T 3ko8_A 67 FHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDAD--VIPTPEEE--PYKPISVYGAAKA 142 (312)
T ss_dssp EECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCS--SSSBCTTS--CCCCCSHHHHHHH
T ss_pred EECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhCCCC--CCCCCCCC--CCCCCChHHHHHH
Confidence 999996 3345678889999999999999999999999999999999997543 34677876 5688999999999
Q ss_pred HHHHHHHHhcCCCCceEEEEecCccccCCCC-CchHHHHHHhcCC-CceEEecCCCcccccccHHHHHHHHHHHHHhhhc
Q 010005 166 QAEALVLFANNIDGLLTCALRPSNVFGPGDT-QLVPLLVNLAKPG-WTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (520)
Q Consensus 166 ~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~-~~~~~l~~~~~~g-~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~ 243 (520)
.+|++++.++.+.|++++++||+++|||+.. ..++.++..+..+ .++.++++|++.++|+|++|+|++++.+++.+.
T Consensus 143 ~~e~~~~~~~~~~g~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~- 221 (312)
T 3ko8_A 143 AGEVMCATYARLFGVRCLAVRYANVVGPRLRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFE- 221 (312)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECEEECTTCCSSHHHHHHHHHHHCTTEEEEC----CEECEEEHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCEEEEeeccccCcCCCCChHHHHHHHHHhCCCCeEEcCCCCeEEeeEEHHHHHHHHHHHHHhcc-
Confidence 9999999998878999999999999999865 4566666666555 566788999999999999999999999998321
Q ss_pred ccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccc
Q 010005 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRT 323 (520)
Q Consensus 244 ~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (520)
.....+++||+++++++++.|+++.+.+.+|.+.+...+|.... . .+ .+ .....
T Consensus 222 -~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~----------~--~~-----~~--------~~~~~ 275 (312)
T 3ko8_A 222 -EMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPD----------G--RG-----WP--------GDVKY 275 (312)
T ss_dssp -HSCCSEEEEEESCSSCEEHHHHHHHHHHHHTCCCEEEEC-----------------------------------CCCSE
T ss_pred -ccCCCCcEEEEcCCCceeHHHHHHHHHHHhCCCCceeecCcccc----------c--cC-----CC--------CCccc
Confidence 13456789999999999999999999999998865555442210 0 00 00 00124
Q ss_pred eEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhh
Q 010005 324 RTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (520)
Q Consensus 324 ~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~ 358 (520)
..+|++|+++.|||+|+++++|+|+++++|++++.
T Consensus 276 ~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~ 310 (312)
T 3ko8_A 276 MTLAVTKLMKLTGWRPTMTSAEAVKKTAEDLAKEL 310 (312)
T ss_dssp ECBCCHHHHHHHCCCCSSCHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhh
Confidence 67899999999999999999999999999998764
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-44 Score=362.35 Aligned_cols=306 Identities=19% Similarity=0.217 Sum_probs=246.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC-CCCC---CCCCCcEEEEecCCCHHHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL-LPDS---LSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~-l~~~---~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
++|+||||||+||||++++++|+++| ++|+++|+ ...... ..+. ....+++++.+|++|.+++.+++
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHG-YDVVIADN--------LVNSKREAIARIEKITGKTPAFHETDVSDERALARIF 74 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECC--------CSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHH
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCC-CcEEEEec--------CCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHH
Confidence 45899999999999999999999999 59999544 322100 0000 01246889999999999999999
Q ss_pred c--CCCEEEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCC
Q 010005 83 E--GASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQ 157 (520)
Q Consensus 83 ~--~~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~ 157 (520)
+ ++|+|||+|+... ...++...++.|+.++.+++++|++.+++||||+||.++||... ..+.+|+. +..|.
T Consensus 75 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~--~~~~~e~~--~~~~~ 150 (341)
T 3enk_A 75 DAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGVPE--RSPIDETF--PLSAT 150 (341)
T ss_dssp HHSCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGBCSCS--SSSBCTTS--CCBCS
T ss_pred hccCCcEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceEecCCC--CCCCCCCC--CCCCC
Confidence 8 8999999999732 33456788999999999999999999999999999999997543 34678877 55788
Q ss_pred ChHHHHHHHHHHHHHHhcCCCC-ceEEEEecCccccCCC------------CCchHHHHHHhcC-CCceEEec------C
Q 010005 158 DLMCDLKAQAEALVLFANNIDG-LLTCALRPSNVFGPGD------------TQLVPLLVNLAKP-GWTKFIIG------S 217 (520)
Q Consensus 158 ~~Y~~sK~~~E~~~~~~~~~~g-i~~~ilRp~~vyGp~~------------~~~~~~l~~~~~~-g~~~~i~g------~ 217 (520)
+.|+.+|..+|++++.++.+.+ ++++++||+++|||+. ..+++.+...... ..++.++| +
T Consensus 151 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 230 (341)
T 3enk_A 151 NPYGQTKLMAEQILRDVEAADPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPD 230 (341)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCSSHHHHHHHHHHTSSSCEEEECSCSSSTT
T ss_pred ChhHHHHHHHHHHHHHHhhcCCCceEEEEeeccccCCccccccCCCcccCccchHHHHHHHHhcCCCceEEeCCccCCCC
Confidence 9999999999999999877665 9999999999999964 2355655554443 35566777 8
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHH
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKW 297 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~ 297 (520)
|++.++|+|++|+|++++.+++.+. +...+++||++++++++++|+++.+.+.+|.+.+....|..
T Consensus 231 g~~~~~~i~v~Dva~a~~~~~~~~~---~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~----------- 296 (341)
T 3enk_A 231 GTGVRDYIHVVDLARGHIAALDALE---RRDASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVARR----------- 296 (341)
T ss_dssp SSCEECEEEHHHHHHHHHHHHHHHH---HHTSCEEEEESCSCCEEHHHHHHHHHHHHCSCCCEEEECCC-----------
T ss_pred CCeeEeeEEHHHHHHHHHHHHHhhh---cCCcceEEEeCCCCceeHHHHHHHHHHHhCCCcceeeCCCC-----------
Confidence 8999999999999999999998421 24568899999999999999999999999987665444311
Q ss_pred HHHHhcccccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 298 IHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
+. ......+|++|++++|||+|+++++|+|+++++||+++.+
T Consensus 297 ------------~~--------~~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~~~~~~~~ 338 (341)
T 3enk_A 297 ------------PG--------DVAECYANPAAAAETIGWKAERDLERMCADHWRWQENNPR 338 (341)
T ss_dssp ------------TT--------CCSEECBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHSTT
T ss_pred ------------CC--------CccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCc
Confidence 00 0124678999999999999999999999999999998754
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-43 Score=364.91 Aligned_cols=303 Identities=19% Similarity=0.169 Sum_probs=251.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
+||+||||||+||||++++++|+++| ++|+++++. ..... .....+++++.+|++|.+++.++++++|
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~--------~~~~~---~~~~~~v~~~~~Dl~d~~~~~~~~~~~d 95 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEG-HYVIASDWK--------KNEHM---TEDMFCDEFHLVDLRVMENCLKVTEGVD 95 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESS--------CCSSS---CGGGTCSEEEECCTTSHHHHHHHHTTCS
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEECC--------Cccch---hhccCCceEEECCCCCHHHHHHHhCCCC
Confidence 56899999999999999999999999 599995543 22110 1112468999999999999999999999
Q ss_pred EEEEcccCCCC----CcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCC---CCCCCCCCccCCCCCCCh
Q 010005 87 TVFYVDATDLN----TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSH---DIHNGDETLTCCWKFQDL 159 (520)
Q Consensus 87 ~Vih~aa~~~~----~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~---~~~~~~E~~~~~~~p~~~ 159 (520)
+|||+|+.... ..++...+++|+.++.+++++|++.+++||||+||.++|+.... ...+.+|+++.+..|.+.
T Consensus 96 ~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~~~~~~~~ 175 (379)
T 2c5a_A 96 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDA 175 (379)
T ss_dssp EEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSH
T ss_pred EEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeehheeCCCCCCCccCCCcCcccCCCCCCCCh
Confidence 99999997332 46788899999999999999999999999999999999975432 123467776545678899
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCC------chHHHHHHhcCCCc-eEEecCCCcccccccHHHHHH
Q 010005 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ------LVPLLVNLAKPGWT-KFIIGSGENMSDFTYVENVAH 232 (520)
Q Consensus 160 Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~------~~~~l~~~~~~g~~-~~i~g~g~~~~~~i~v~Dva~ 232 (520)
|+.+|..+|++++.++.++|++++++||+.+|||++.. .++.++..+..+.+ +.++++|++.++|+|++|+|+
T Consensus 176 Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~ 255 (379)
T 2c5a_A 176 FGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVE 255 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCCCcccccccHHHHHHHHHHhCCCceEEeCCCCeeEEEEEHHHHHH
Confidence 99999999999999887779999999999999998642 57777777766665 778899999999999999999
Q ss_pred HHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCc
Q 010005 233 AHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLS 312 (520)
Q Consensus 233 ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (520)
+++.+++ .+ .+++||+++++++++.|+++.+.+.+|.+.+...+|.+. .
T Consensus 256 ai~~~l~-----~~--~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~--------------------~---- 304 (379)
T 2c5a_A 256 GVLRLTK-----SD--FREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPE--------------------G---- 304 (379)
T ss_dssp HHHHHHH-----SS--CCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCCC--------------------C----
T ss_pred HHHHHhh-----cc--CCCeEEeCCCCccCHHHHHHHHHHHhCCCCceeeCCCCC--------------------C----
Confidence 9999998 22 567999999999999999999999999876655454210 0
Q ss_pred hHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhc
Q 010005 313 ACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (520)
Q Consensus 313 ~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~ 360 (520)
.....+|++|++++|||+|+++++|+++++++||+++...
T Consensus 305 --------~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 344 (379)
T 2c5a_A 305 --------VRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIEK 344 (379)
T ss_dssp --------CSBCEECCHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred --------cccccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhHhh
Confidence 1245789999999999999999999999999999887553
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-43 Score=356.67 Aligned_cols=307 Identities=21% Similarity=0.200 Sum_probs=245.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcC-CcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELG-KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g-~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
++|+||||||+||||++++++|+++| .++|+++|+... ......+.......+++++.+|++|.+++.+++.++
T Consensus 2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~-----~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 76 (336)
T 2hun_A 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGY-----GSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKV 76 (336)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCT-----TCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTC
T ss_pred CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcc-----cCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCC
Confidence 35799999999999999999999996 258999665321 001111212112457899999999999999999999
Q ss_pred CEEEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHCCC-CEEEEeecccccccCCCCCCCCCCCccCCCCCCChHH
Q 010005 86 STVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKV-RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (520)
Q Consensus 86 D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~gv-kr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~ 161 (520)
|+|||+|+... +..++...+++|+.++.+++++|++.++ +||||+||.++||... ..+.+|+. +..|.+.|+
T Consensus 77 d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~--~~~~~E~~--~~~~~~~Y~ 152 (336)
T 2hun_A 77 DGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDIL--KGSFTEND--RLMPSSPYS 152 (336)
T ss_dssp SEEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCS--SSCBCTTB--CCCCCSHHH
T ss_pred CEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCC--CCCcCCCC--CCCCCCccH
Confidence 99999999732 2346778999999999999999999875 7999999999997543 23678877 557889999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC--CchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHH
Q 010005 162 DLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 162 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~ 239 (520)
.+|..+|++++.++.++|++++++||+.+|||+.. .+++.++..+..++++.++++|++.++|+|++|+|++++.+++
T Consensus 153 ~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~ 232 (336)
T 2hun_A 153 ATKAASDMLVLGWTRTYNLNASITRCTNNYGPYQFPEKLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVLL 232 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCEEEETC---CEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeeeeeeCcCCCcCchHHHHHHHHHcCCCceEeCCCCceeeeEEHHHHHHHHHHHHh
Confidence 99999999999998778999999999999999864 4677788888888888888999999999999999999999987
Q ss_pred hhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHH
Q 010005 240 ALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQL 319 (520)
Q Consensus 240 ~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (520)
....|++||+++++++++.|+++.+.+.+|.+.+.+... . ..+.
T Consensus 233 ------~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~------------------~----~~~~-------- 276 (336)
T 2hun_A 233 ------KGESREIYNISAGEEKTNLEVVKIILRLMGKGEELIELV------------------E----DRPG-------- 276 (336)
T ss_dssp ------HCCTTCEEEECCSCEECHHHHHHHHHHHTTCCSTTEEEE------------------C----CCTT--------
T ss_pred ------CCCCCCEEEeCCCCcccHHHHHHHHHHHhCCCccccccc------------------C----CCCC--------
Confidence 234688999999999999999999999999875422210 0 0000
Q ss_pred hccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhh
Q 010005 320 ASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (520)
Q Consensus 320 ~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~ 358 (520)
......+|++|++++|||+|+++++|+++++++||+++.
T Consensus 277 ~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~ 315 (336)
T 2hun_A 277 HDLRYSLDSWKITRDLKWRPKYTFDEGIKKTIDWYLKNE 315 (336)
T ss_dssp CCCCCCBCCHHHHHHHCCCCSSCHHHHHHHHHHHHHHTH
T ss_pred chhhhcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCc
Confidence 011356799999999999999999999999999998754
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-44 Score=359.06 Aligned_cols=294 Identities=16% Similarity=0.152 Sum_probs=241.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG- 84 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~- 84 (520)
+++|+||||||+||||++++++|+++|+ . ... ....++.+.+|+.|.+++.+++++
T Consensus 4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~----~-----------~~~--------~~~~~~~~~~D~~d~~~~~~~~~~~ 60 (319)
T 4b8w_A 4 FQSMRILVTGGSGLVGKAIQKVVADGAG----L-----------PGE--------DWVFVSSKDADLTDTAQTRALFEKV 60 (319)
T ss_dssp CCCCEEEEETCSSHHHHHHHHHHHTTTC----C-----------TTC--------EEEECCTTTCCTTSHHHHHHHHHHS
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhcCC----c-----------ccc--------cccccCceecccCCHHHHHHHHhhc
Confidence 5679999999999999999999999994 0 000 001234457899999999999987
Q ss_pred -CCEEEEcccCCC----CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccC--CCCCC
Q 010005 85 -ASTVFYVDATDL----NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC--CWKFQ 157 (520)
Q Consensus 85 -~D~Vih~aa~~~----~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~--~~~p~ 157 (520)
+|+|||+|+... +..++...+++|+.++.+++++|++.+++||||+||.++||... ..+.+|+++. +..|.
T Consensus 61 ~~d~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS~~vyg~~~--~~~~~E~~~~~~~~~p~ 138 (319)
T 4b8w_A 61 QPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKT--TYPIDETMIHNGPPHNS 138 (319)
T ss_dssp CCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSCSSC--CSSBCGGGGGBSCCCSS
T ss_pred CCCEEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcchhhcCCCC--CCCccccccccCCCCCC
Confidence 999999999832 34678889999999999999999999999999999999997543 3467887643 34555
Q ss_pred C-hHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC------CchHHHHHH----hcCCCceEEecCCCccccccc
Q 010005 158 D-LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNL----AKPGWTKFIIGSGENMSDFTY 226 (520)
Q Consensus 158 ~-~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~------~~~~~l~~~----~~~g~~~~i~g~g~~~~~~i~ 226 (520)
+ +|+.+|..+|++++.+++++|++++++||+++|||++. .+++.++.. +..|+++.++++|++.++|+|
T Consensus 139 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~ 218 (319)
T 4b8w_A 139 NFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIY 218 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCCCTTTSCHHHHHHHHHHHHHHHTCCEEEESCSCCEECEEE
T ss_pred cchHHHHHHHHHHHHHHHHHhhCCCEEEEeeccccCCCCCCCCccccccHHHHHHHHHHhccCCceEEeCCCCeeEEEEe
Confidence 5 69999999999999998878999999999999999874 356666666 788888889999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccc
Q 010005 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRT 306 (520)
Q Consensus 227 v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~ 306 (520)
++|+|++++.+++.. ....+++||+++++++++.|+++.+.+.+|.+.+....|.
T Consensus 219 v~Dva~a~~~~~~~~----~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~--------------------- 273 (319)
T 4b8w_A 219 SLDLAQLFIWVLREY----NEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTT--------------------- 273 (319)
T ss_dssp HHHHHHHHHHHHHHC----CCSSCEEECCCGGGCEEHHHHHHHHHHHTTCCSCEEEETT---------------------
T ss_pred HHHHHHHHHHHHhcc----ccCCceEEEecCCCceeHHHHHHHHHHHhCCCCcEEeCCC---------------------
Confidence 999999999999831 2345789999999999999999999999998765433321
Q ss_pred cCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 307 YNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
.+. . .....+|++|+++.|||+|.++++|+++++++||+++..
T Consensus 274 --~~~-~-------~~~~~~d~~k~~~~lg~~p~~~~~~~l~~~~~~~~~~~~ 316 (319)
T 4b8w_A 274 --KSD-G-------QFKKTASNSKLRTYLPDFRFTPFKQAVKETCAWFTDNYE 316 (319)
T ss_dssp --SCC-C-------CSCCCBCCHHHHHHCTTCCCCCHHHHHHHHHHHHHHSCS
T ss_pred --CCc-C-------cccccCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 000 0 013568999999999999999999999999999998654
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-43 Score=354.54 Aligned_cols=302 Identities=19% Similarity=0.250 Sum_probs=243.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--CC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GA 85 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~~ 85 (520)
||+||||||+||||++++++|+++| ++|+++|+.. ... .+.+. .+++++.+|+.|.+++.++++ ++
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~--------~~~--~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~ 68 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEG-LSVVVVDNLQ--------TGH--EDAIT-EGAKFYNGDLRDKAFLRDVFTQENI 68 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCS--------SCC--GGGSC-TTSEEEECCTTCHHHHHHHHHHSCE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeCCC--------cCc--hhhcC-CCcEEEECCCCCHHHHHHHHhhcCC
Confidence 4799999999999999999999999 5999965432 110 01111 268899999999999999998 89
Q ss_pred CEEEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHH
Q 010005 86 STVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (520)
Q Consensus 86 D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~ 162 (520)
|+|||+|+... +..++...+++|+.++.+++++|++.+++||||+||.++||... ..+.+|++ +..|.+.|+.
T Consensus 69 d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~--~~~~~E~~--~~~~~~~Y~~ 144 (330)
T 2c20_A 69 EAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYGEVD--VDLITEET--MTNPTNTYGE 144 (330)
T ss_dssp EEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGGCSCS--SSSBCTTS--CCCCSSHHHH
T ss_pred CEEEECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCCceeeCCCC--CCCCCcCC--CCCCCChHHH
Confidence 99999999732 23467889999999999999999999999999999999997543 34678887 4578899999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEecCccccCCC-----------CCchHHHHHHhcC-CCceEEec------CCCccccc
Q 010005 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGD-----------TQLVPLLVNLAKP-GWTKFIIG------SGENMSDF 224 (520)
Q Consensus 163 sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~-----------~~~~~~l~~~~~~-g~~~~i~g------~g~~~~~~ 224 (520)
+|..+|++++.++.++|++++++||+.+|||+. ..+++.+...+.. +.++.+++ +|++.++|
T Consensus 145 sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 224 (330)
T 2c20_A 145 TKLAIEKMLHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDY 224 (330)
T ss_dssp HHHHHHHHHHHHHHTSSCEEEEEECSEEECCCTTCSSCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCCSSSSSSCEECE
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCcccCCCCcCccccccccccchHHHHHHHHhhcCCCeEEeCCccccCCCceeEee
Confidence 999999999999887899999999999999963 2356666665553 44566776 78889999
Q ss_pred ccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcc
Q 010005 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGL 304 (520)
Q Consensus 225 i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~ 304 (520)
+|++|+|++++.+++... ....+++||+++++++++.|+++.+.+.+|.+.+....|..
T Consensus 225 v~v~Dva~a~~~~~~~~~---~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~------------------ 283 (330)
T 2c20_A 225 IHVEDLVAAHFLGLKDLQ---NGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRR------------------ 283 (330)
T ss_dssp EEHHHHHHHHHHHHHHHH---TTCCCEEEECCCTTCBCHHHHHHHHHHHTTSCCCEEEECCC------------------
T ss_pred EeHHHHHHHHHHHHhccc---cCCCCCeEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCCC------------------
Confidence 999999999999988421 11246899999999999999999999999987654433310
Q ss_pred cccCCCCchHHHHHHhccceEechHHHHHhcCCCCCC-CHHHHHHHHHHHHHhhhh
Q 010005 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVV-SLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~-sleegi~~~~~~~~~~~~ 359 (520)
. ..+ ....+|++|++++|||+|++ +++|+++++++||+++.+
T Consensus 284 -~-~~~-----------~~~~~d~~k~~~~lG~~p~~~~l~~~l~~~~~~~~~~~~ 326 (330)
T 2c20_A 284 -A-GDP-----------ARLVASSQKAKEKLGWDPRYVNVKTIIEHAWNWHQKQPN 326 (330)
T ss_dssp -S-SCC-----------SEECBCCHHHHHHHCCCCSCCCHHHHHHHHHHHHHHCSS
T ss_pred -C-Ccc-----------cccccCHHHHHHHhCCCCccCCHHHHHHHHHHHHHHhhh
Confidence 0 000 14678999999999999998 999999999999988654
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-43 Score=355.68 Aligned_cols=297 Identities=18% Similarity=0.130 Sum_probs=244.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~-- 84 (520)
++|+||||||+||||++++++|+++| ++|+++|+ ++... . + +++++.+|++|.+++.+++++
T Consensus 11 ~~~~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r--------~~~~~---~-l---~~~~~~~Dl~d~~~~~~~~~~~~ 74 (321)
T 2pk3_A 11 GSMRALITGVAGFVGKYLANHLTEQN-VEVFGTSR--------NNEAK---L-P---NVEMISLDIMDSQRVKKVISDIK 74 (321)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEES--------CTTCC---C-T---TEEEEECCTTCHHHHHHHHHHHC
T ss_pred CcceEEEECCCChHHHHHHHHHHHCC-CEEEEEec--------CCccc---c-c---eeeEEECCCCCHHHHHHHHHhcC
Confidence 46899999999999999999999999 59999554 33211 1 1 688999999999999999986
Q ss_pred CCEEEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHC-CCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChH
Q 010005 85 ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLM 160 (520)
Q Consensus 85 ~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~-gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y 160 (520)
+|+|||+|+... +..++...+++|+.|+.+++++|++. +++||||+||.++||.......+.+|++ +..|.+.|
T Consensus 75 ~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~~--~~~~~~~Y 152 (321)
T 2pk3_A 75 PDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEEN--QLRPMSPY 152 (321)
T ss_dssp CSEEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTTS--CCBCCSHH
T ss_pred CCEEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCCC--CCCCCCcc
Confidence 999999999732 34478889999999999999999886 6899999999999975421334678887 55788999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC--CchHHHHHHhcC---C--CceEEecCCCcccccccHHHHHHH
Q 010005 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKP---G--WTKFIIGSGENMSDFTYVENVAHA 233 (520)
Q Consensus 161 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~--~~~~~l~~~~~~---g--~~~~i~g~g~~~~~~i~v~Dva~a 233 (520)
+.+|..+|++++.++.++|++++++||+++|||+.. ..++.++..+.. | .++.+++++++.++|+|++|+|++
T Consensus 153 ~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~v~Dva~a 232 (321)
T 2pk3_A 153 GVSKASVGMLARQYVKAYGMDIIHTRTFNHIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQA 232 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHHTTSSCSEEEESCSSCEEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEeCcccCcCCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCcEEeeEEHHHHHHH
Confidence 999999999999988777999999999999999875 356666666555 6 567788999999999999999999
Q ss_pred HHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCch
Q 010005 234 HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSA 313 (520)
Q Consensus 234 i~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (520)
++.+++. ...|++||+++++++++.|+++.+.+.+|.+.+....|.. ..+ .
T Consensus 233 ~~~~~~~------~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~---------------------~~~-~- 283 (321)
T 2pk3_A 233 YWLLSQY------GKTGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQ---------------------LRP-S- 283 (321)
T ss_dssp HHHHHHH------CCTTCEEEESCSCEEEHHHHHHHHHHHSSSCCEEEECGGG---------------------CCS-S-
T ss_pred HHHHHhC------CCCCCeEEeCCCCCeeHHHHHHHHHHHhCCCCceeecccc---------------------CCC-c-
Confidence 9999982 3467899999999999999999999999987554444311 000 0
Q ss_pred HHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Q 010005 314 CYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSH 356 (520)
Q Consensus 314 ~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~ 356 (520)
......+|++|++++|||+|+++++|+|+++++||++
T Consensus 284 ------~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~ 320 (321)
T 2pk3_A 284 ------EVPTLIGSNKRLKDSTGWKPRIPLEKSLFEILQSYRQ 320 (321)
T ss_dssp ------CCSBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHT
T ss_pred ------ccchhccCHHHHHHHcCCCcCCCHHHHHHHHHHHHhc
Confidence 0125678999999999999999999999999999975
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-43 Score=355.92 Aligned_cols=305 Identities=20% Similarity=0.230 Sum_probs=246.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhc---CC--cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLEL---GK--CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~---g~--~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
|+||||||+||||++++++|+++ |. ++|+++|+... .+.. ..+.......+++++.+|++|.+++.+++.
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~---~~~~--~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 75 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTY---AGNR--ANLAPVDADPRLRFVHGDIRDAGLLARELR 75 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCT---TCCG--GGGGGGTTCTTEEEEECCTTCHHHHHHHTT
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCc---cCch--hhhhhcccCCCeEEEEcCCCCHHHHHHHhc
Confidence 58999999999999999999996 51 38999665321 0011 111111123578999999999999999999
Q ss_pred CCCEEEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChH
Q 010005 84 GASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLM 160 (520)
Q Consensus 84 ~~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y 160 (520)
++|+|||+|+... +..++...+++|+.++.+++++|++.+++||||+||.++||... ..+.+|+. +..|.+.|
T Consensus 76 ~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS~~vyg~~~--~~~~~E~~--~~~~~~~Y 151 (337)
T 1r6d_A 76 GVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSID--SGSWTESS--PLEPNSPY 151 (337)
T ss_dssp TCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCS--SSCBCTTS--CCCCCSHH
T ss_pred CCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHhCCCC--CCCCCCCC--CCCCCCch
Confidence 9999999999732 22467789999999999999999999999999999999997543 23677876 55788999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC--CchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHH
Q 010005 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238 (520)
Q Consensus 161 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~ 238 (520)
+.+|..+|++++.++.++|++++++||+.+|||+.. .+++.++..+..++++.++++|++.++|+|++|+|++++.++
T Consensus 152 ~~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~ 231 (337)
T 1r6d_A 152 AASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVL 231 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCCCCCCChHHHHHHHHhcCCCcEEeCCCCeeEeeEeHHHHHHHHHHHH
Confidence 999999999999988777999999999999999874 567778888888888888899999999999999999999998
Q ss_pred HhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHH
Q 010005 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQ 318 (520)
Q Consensus 239 ~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (520)
+ ....|++||+++++++++.|+++.+.+.+|.+.+.+... . ..+.
T Consensus 232 ~------~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~------------------~----~~~~------- 276 (337)
T 1r6d_A 232 A------GGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKV------------------A----DRKG------- 276 (337)
T ss_dssp H------HCCTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEE------------------C----CCTT-------
T ss_pred h------CCCCCCEEEeCCCCCccHHHHHHHHHHHhCCCcccceec------------------C----CCCC-------
Confidence 7 234678999999999999999999999999864322110 0 0010
Q ss_pred HhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhh
Q 010005 319 LASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (520)
Q Consensus 319 ~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~ 358 (520)
....+.+|++|++++|||+|+++++|+++++++||++..
T Consensus 277 -~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~~ 315 (337)
T 1r6d_A 277 -HDLRYSLDGGKIERELGYRPQVSFADGLARTVRWYRENR 315 (337)
T ss_dssp -CCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHCH
T ss_pred -CcceeecCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhch
Confidence 011345799999999999999999999999999998754
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-43 Score=355.03 Aligned_cols=305 Identities=18% Similarity=0.207 Sum_probs=247.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhc--CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLEL--GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~--g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
||+||||||+||||++++++|+++ | ++|+++|+... ... ...+. .+...+++++.+|++|.+++.++++++
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~---~~~--~~~~~-~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 76 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPD-VHVTVLDKLTY---AGN--KANLE-AILGDRVELVVGDIADAELVDKLAAKA 76 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTT-CEEEEEECCCT---TCC--GGGTG-GGCSSSEEEEECCTTCHHHHHHHHTTC
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCC-CEEEEEeCCCC---CCC--hhHHh-hhccCCeEEEECCCCCHHHHHHHhhcC
Confidence 579999999999999999999999 7 59999665321 000 01111 122357899999999999999999999
Q ss_pred CEEEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCC----------CCCCCCCccC
Q 010005 86 STVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHD----------IHNGDETLTC 152 (520)
Q Consensus 86 D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~----------~~~~~E~~~~ 152 (520)
|+|||+|+... +..+++..+++|+.++.+++++|++.++ ||||+||.++||..... ..+.+|++
T Consensus 77 d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~-~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~~-- 153 (348)
T 1oc2_A 77 DAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAET-- 153 (348)
T ss_dssp SEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTS--
T ss_pred CEEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC-eEEEecccceeCCCcccccccccccccCCCcCCCC--
Confidence 99999999732 2246778999999999999999999998 99999999999754221 13677776
Q ss_pred CCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC--CchHHHHHHhcCCCceEEecCCCcccccccHHHH
Q 010005 153 CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENV 230 (520)
Q Consensus 153 ~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dv 230 (520)
+..|.+.|+.+|..+|++++.++.+.|++++++||+.+|||+.. ..++.++..+..|+++.++++|++.++|+|++|+
T Consensus 154 ~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dv 233 (348)
T 1oc2_A 154 NYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDH 233 (348)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTTSHHHHHHHHHHHTCCCEEETTSCCEEECEEHHHH
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCCccchHHHHHHHHHcCCCceEecCCCceEeeEEHHHH
Confidence 45688999999999999999988777999999999999999874 5677777777778877888999999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCC
Q 010005 231 AHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHS 310 (520)
Q Consensus 231 a~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (520)
|++++.+++ ....|++||+++++++++.|+++.+.+.+|.+.+.+... . ..+
T Consensus 234 a~~~~~~~~------~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~------------------~----~~~ 285 (348)
T 1oc2_A 234 STGVWAILT------KGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHV------------------T----DRA 285 (348)
T ss_dssp HHHHHHHHH------HCCTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEE------------------C----CCT
T ss_pred HHHHHHHhh------CCCCCCeEEeCCCCCCCHHHHHHHHHHHhCCCccccccC------------------C----CCC
Confidence 999999987 234688999999999999999999999999875422110 0 001
Q ss_pred CchHHHHHHhccceEechHHHHHhcCCCCCCC-HHHHHHHHHHHHHhhh
Q 010005 311 LSACYIVQLASRTRTFDCIAAQKHIGYSPVVS-LEEGVSSTIQSFSHLA 358 (520)
Q Consensus 311 ~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~s-leegi~~~~~~~~~~~ 358 (520)
. ....+.+|++|++++|||+|+++ ++|+++++++||+++.
T Consensus 286 ~--------~~~~~~~d~~k~~~~lG~~p~~~~~~~~l~~~~~~~~~~~ 326 (348)
T 1oc2_A 286 G--------HDLRYAIDASKLRDELGWTPQFTDFSEGLEETIQWYTDNQ 326 (348)
T ss_dssp T--------CCCBCCBCCHHHHHHHCCCCSCCCHHHHHHHHHHHHHHTH
T ss_pred C--------cccccccCHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHhh
Confidence 0 01235689999999999999998 9999999999998754
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-43 Score=363.33 Aligned_cols=303 Identities=22% Similarity=0.289 Sum_probs=241.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcC-CcEEEEecCCcccccCCCCCCCCCCCCC-CCCCcEEEEecCCCHHHHHHHHc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELG-KCIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g-~~~V~~~D~~~~~~l~r~~~~~~l~~~~-~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
.++|+||||||+||||+++++.|+++| + +|++++ |..... .+.+ ...+++++.+|++|.+++.++++
T Consensus 30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~-~V~~~~--------r~~~~~--~~~l~~~~~v~~~~~Dl~d~~~l~~~~~ 98 (377)
T 2q1s_A 30 LANTNVMVVGGAGFVGSNLVKRLLELGVN-QVHVVD--------NLLSAE--KINVPDHPAVRFSETSITDDALLASLQD 98 (377)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTCS-EEEEEC--------CCTTCC--GGGSCCCTTEEEECSCTTCHHHHHHCCS
T ss_pred hCCCEEEEECCccHHHHHHHHHHHHcCCc-eEEEEE--------CCCCCc--hhhccCCCceEEEECCCCCHHHHHHHhh
Confidence 456899999999999999999999999 6 999954 433211 0111 24578999999999999999999
Q ss_pred CCCEEEEcccCCCC---CcchhhHHhhhHHHHHHHHHHHHHC-CCCEEEEeecccccccCCCCCCCCC--CCccC-CC-C
Q 010005 84 GASTVFYVDATDLN---TDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGSHDIHNGD--ETLTC-CW-K 155 (520)
Q Consensus 84 ~~D~Vih~aa~~~~---~~~~~~~~~~Nv~gt~~ll~aa~~~-gvkr~V~~SS~~vyg~~~~~~~~~~--E~~~~-~~-~ 155 (520)
++|+|||+|+.... ..++...+++|+.++.+++++|++. +++||||+||.++||.... .+.+ |+.+. +. .
T Consensus 99 ~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~--~~~~~~E~~~~~~~~~ 176 (377)
T 2q1s_A 99 EYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTF--DDAKATEETDIVSLHN 176 (377)
T ss_dssp CCSEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC----------------CCCCCCCSSC
T ss_pred CCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcCCCCC--CCcCcccccccccccC
Confidence 99999999997321 2467889999999999999999999 8999999999999975432 2456 66521 33 6
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCC---------------CCchHHHHHHhcCCCceEEecCCCc
Q 010005 156 FQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGD---------------TQLVPLLVNLAKPGWTKFIIGSGEN 220 (520)
Q Consensus 156 p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~---------------~~~~~~l~~~~~~g~~~~i~g~g~~ 220 (520)
|.++|+.+|..+|++++.++.+.|++++++||+.+|||+. ...++.++..+..++++.++++|++
T Consensus 177 ~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~ 256 (377)
T 2q1s_A 177 NDSPYSMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVA 256 (377)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHHHHHHHTTCCCCCSGGGCC
T ss_pred CCCchHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCcccccccccCcccccccHHHHHHHHHHcCCCeEEeCCCCe
Confidence 7889999999999999998876799999999999999987 3567888888888888778899999
Q ss_pred ccccccHHHHHHH-HHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHH
Q 010005 221 MSDFTYVENVAHA-HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIH 299 (520)
Q Consensus 221 ~~~~i~v~Dva~a-i~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~ 299 (520)
.++|+|++|+|++ ++.+++ .+ ..| +||++++++++++|+++.+.+.+|.+.+....|..
T Consensus 257 ~~~~i~v~Dva~a~i~~~~~-----~~-~~g-~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~------------- 316 (377)
T 2q1s_A 257 TRDFIFVEDVANGLIACAAD-----GT-PGG-VYNIASGKETSIADLATKINEITGNNTELDRLPKR------------- 316 (377)
T ss_dssp EECCEEHHHHHHHHHHHHHH-----CC-TTE-EEECCCCCCEEHHHHHHHHHHHHTCCSCCCCCCCC-------------
T ss_pred EEeeEEHHHHHHHHHHHHHh-----cC-CCC-eEEecCCCceeHHHHHHHHHHHhCCCCCceeCCCC-------------
Confidence 9999999999999 999888 22 356 99999999999999999999999987554444310
Q ss_pred HHhcccccCCCCchHHHHHHhcc-ceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 300 EKLGLRTYNHSLSACYIVQLASR-TRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
+. ... ...+|++|++++|||+|+++++|+|+++++||+++..
T Consensus 317 --------------~~----~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 359 (377)
T 2q1s_A 317 --------------PW----DNSGKRFGSPEKARRELGFSADVSIDDGLRKTIEWTKANLA 359 (377)
T ss_dssp --------------GG----GCC-CCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHTHH
T ss_pred --------------cc----ccccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhhh
Confidence 00 011 4678999999999999999999999999999987643
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-43 Score=350.99 Aligned_cols=293 Identities=22% Similarity=0.299 Sum_probs=240.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--CCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~~D 86 (520)
|+||||||+||||++++++|+++| ++|+++|+ .... .. ..+ ..+++++.+|++|.+++.++++ ++|
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r--------~~~~-~~-~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~d 68 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARG-LEVAVLDN--------LATG-KR-ENV-PKGVPFFRVDLRDKEGVERAFREFRPT 68 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT-CEEEEECC--------CSSC-CG-GGS-CTTCCEECCCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCC-CEEEEEEC--------CCcC-ch-hhc-ccCeEEEECCCCCHHHHHHHHHhcCCC
Confidence 589999999999999999999999 59999554 2110 00 111 1357889999999999999998 899
Q ss_pred EEEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecc-cccccCCCCCCCCCCCccCCCCCCChHHH
Q 010005 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA-DVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (520)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~-~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~ 162 (520)
+|||+|+... +..++...+++|+.|+.+++++|++.+++|+||+||. ++||... ...+.+|+. +..|.+.|+.
T Consensus 69 ~vi~~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~~g~~~-~~~~~~E~~--~~~~~~~Y~~ 145 (311)
T 2p5y_A 69 HVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGAIYGEVP-EGERAEETW--PPRPKSPYAA 145 (311)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEHHHHHCCCC-TTCCBCTTS--CCCCCSHHHH
T ss_pred EEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCChhhcCCCC-CCCCcCCCC--CCCCCChHHH
Confidence 9999999732 2346778999999999999999999999999999999 8997522 223667776 4568889999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEecCccccCCCCC-----chHHHHHHhcCCCceEEe-----cCCCcccccccHHHHHH
Q 010005 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-----LVPLLVNLAKPGWTKFII-----GSGENMSDFTYVENVAH 232 (520)
Q Consensus 163 sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~-----~~~~l~~~~~~g~~~~i~-----g~g~~~~~~i~v~Dva~ 232 (520)
+|..+|++++.++.++|++++++||+++|||++.. +++.++..+..+.++.++ ++|++.++|+|++|+|+
T Consensus 146 sK~~~e~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~ 225 (311)
T 2p5y_A 146 SKAAFEHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAE 225 (311)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCSSSTTHHHHHHHHHHHHTCCEEEECSSSTTSCCCEECEEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeeccccCcCCCCCCcCcHHHHHHHHHHcCCCcEEEecccCCCCCeEEeeEEHHHHHH
Confidence 99999999999887779999999999999998642 466777777778877777 88999999999999999
Q ss_pred HHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCc
Q 010005 233 AHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLS 312 (520)
Q Consensus 233 ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (520)
+++.+++ .. +++||+++++++|++|+++.+.+.+|.+.+....|.. + .
T Consensus 226 a~~~~~~------~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~-----------------------~-~ 273 (311)
T 2p5y_A 226 AHALALF------SL--EGIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPR-----------------------P-G 273 (311)
T ss_dssp HHHHHHH------HC--CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEEECCC-----------------------T-T
T ss_pred HHHHHHh------CC--CCEEEeCCCCCccHHHHHHHHHHHhCCCCCceeCCCC-----------------------c-c
Confidence 9999987 22 7899999999999999999999999987554433311 0 0
Q ss_pred hHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Q 010005 313 ACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSH 356 (520)
Q Consensus 313 ~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~ 356 (520)
. .....+|++|+++ |||+|+++++|+++++++||++
T Consensus 274 ~-------~~~~~~d~~k~~~-lg~~p~~~~~~~l~~~~~~~~~ 309 (311)
T 2p5y_A 274 D-------LERSVLSPLKLMA-HGWRPKVGFQEGIRLTVDHFRG 309 (311)
T ss_dssp C-------CSBCCBCCHHHHT-TTCCCSSCHHHHHHHHHHHHHT
T ss_pred c-------hhhccCCHHHHHH-CCCCCCCCHHHHHHHHHHHHHh
Confidence 0 0246789999999 9999999999999999999976
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-43 Score=356.77 Aligned_cols=310 Identities=22% Similarity=0.234 Sum_probs=247.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCC---CCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS---SGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~---~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
++|+||||||+||||+++++.|+++| ++|+++|+.... .......+.+.+. ..+++++.+|++|.+++.++++
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 101 (352)
T 1sb8_A 26 QPKVWLITGVAGFIGSNLLETLLKLD-QKVVGLDNFATG---HQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA 101 (352)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSC---CHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT
T ss_pred cCCeEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCCcc---chhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhc
Confidence 56899999999999999999999999 599996543210 0000000000000 2478899999999999999999
Q ss_pred CCCEEEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChH
Q 010005 84 GASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLM 160 (520)
Q Consensus 84 ~~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y 160 (520)
++|+|||+|+... +..++...+++|+.++.+++++|++.+++||||+||.++|+.... .+.+|++ +..|.+.|
T Consensus 102 ~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~--~~~~E~~--~~~~~~~Y 177 (352)
T 1sb8_A 102 GVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPG--LPKVEDT--IGKPLSPY 177 (352)
T ss_dssp TCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCC--SSBCTTC--CCCCCSHH
T ss_pred CCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhcCCCCC--CCCCCCC--CCCCCChh
Confidence 9999999999732 234678899999999999999999999999999999999975432 3677877 45788999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC------CchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHH
Q 010005 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234 (520)
Q Consensus 161 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~------~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai 234 (520)
+.+|..+|++++.++.+.|++++++||+.+|||+.. .+++.++..+..|.++.++++|++.++|+|++|+|+++
T Consensus 178 ~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~ 257 (352)
T 1sb8_A 178 AVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQAN 257 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCCCcchhhHHHHHHHHHHCCCCcEEeCCCCceEeeEEHHHHHHHH
Confidence 999999999999988777999999999999999864 34677777777888878889999999999999999999
Q ss_pred HHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHc---CCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCC
Q 010005 235 VCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGL---GYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSL 311 (520)
Q Consensus 235 ~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~---g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (520)
+.+++. .+...+++||+++++++|+.|+++.+.+.+ |.+.+.. |.. .. ..+
T Consensus 258 ~~~~~~----~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~--~~~----------------~~---~~~- 311 (352)
T 1sb8_A 258 LLAATA----GLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHRE--PVY----------------RD---FRE- 311 (352)
T ss_dssp HHHHTC----CGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCC--CEE----------------EC---CCT-
T ss_pred HHHHhc----cccCCCceEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCC--cee----------------cC---CCc-
Confidence 988872 124568899999999999999999999999 8765421 100 00 000
Q ss_pred chHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhh
Q 010005 312 SACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (520)
Q Consensus 312 ~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~ 357 (520)
. ......+|++|++++|||+|+++++|+++++++||+++
T Consensus 312 ---~----~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~ 350 (352)
T 1sb8_A 312 ---G----DVRHSLADISKAAKLLGYAPKYDVSAGVALAMPWYIMF 350 (352)
T ss_dssp ---T----CCSBCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHH
T ss_pred ---c----chhhccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 0 01245679999999999999999999999999999875
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-42 Score=350.30 Aligned_cols=310 Identities=17% Similarity=0.205 Sum_probs=243.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC--CCCCCCC--CCCCCcEEEEecCCCHHHHHHHHc
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES--NSLLPDS--LSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~--~~~l~~~--~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
+|+||||||+||||++++++|+++| ++|+++|+... -.|+.. ...+... ....+++++.+|++|.+++.++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~--~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAG-YLPVVIDNFHN--AFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFK 78 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTT-CCEEEEECSSS--SCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEecCCc--ccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHH
Confidence 5899999999999999999999999 59999765421 011110 0000000 012468899999999999999998
Q ss_pred --CCCEEEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCC-C
Q 010005 84 --GASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF-Q 157 (520)
Q Consensus 84 --~~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p-~ 157 (520)
++|+|||+|+... ...++...+++|+.++.+++++|++.+++||||+||.++||... ..+.+|+. +..| .
T Consensus 79 ~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~--~~~~~E~~--~~~p~~ 154 (348)
T 1ek6_A 79 KYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQ--YLPLDEAH--PTGGCT 154 (348)
T ss_dssp HCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCS--SSSBCTTS--CCCCCS
T ss_pred hcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCC--CCCcCCCC--CCCCCC
Confidence 8999999999732 23467789999999999999999999999999999999997542 34678877 4456 7
Q ss_pred ChHHHHHHHHHHHHHHhcCC-CCceEEEEecCccccCCC------------CCchHHHHHHhc-CCCceEEec------C
Q 010005 158 DLMCDLKAQAEALVLFANNI-DGLLTCALRPSNVFGPGD------------TQLVPLLVNLAK-PGWTKFIIG------S 217 (520)
Q Consensus 158 ~~Y~~sK~~~E~~~~~~~~~-~gi~~~ilRp~~vyGp~~------------~~~~~~l~~~~~-~g~~~~i~g------~ 217 (520)
+.|+.+|..+|++++.++.+ .+++++++||+++|||+. ..+++.+...+. .+.++.+++ +
T Consensus 155 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 234 (348)
T 1ek6_A 155 NPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTED 234 (348)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSS
T ss_pred CchHHHHHHHHHHHHHHHhcCCCcceEEEeeccccCCCcccccCcCcccchhhHHHHHHHHHHhcCCCeEEeCCcccCCC
Confidence 89999999999999998764 249999999999999952 246677777776 677777776 6
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCC-ceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHH
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAG-MAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVK 296 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g-~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~ 296 (520)
|++.++|+|++|+|++++.+++.. ....+ ++||+++++++++.|+++.+.+.+|.+.+....|..
T Consensus 235 g~~~~~~i~v~Dva~a~~~~~~~~----~~~~g~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~---------- 300 (348)
T 1ek6_A 235 GTGVRDYIHVVDLAKGHIAALRKL----KEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARR---------- 300 (348)
T ss_dssp SSCEECEEEHHHHHHHHHHHHHHH----TTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECCC----------
T ss_pred CceEEeeEEHHHHHHHHHHHHhcc----cccCCceEEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCCC----------
Confidence 788999999999999999998832 11344 899999999999999999999999987554433310
Q ss_pred HHHHHhcccccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 297 WIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
+. . .....+|++|++++|||+|+++++|+++++++||+++..
T Consensus 301 -------------~~-~-------~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~w~~~~~~ 342 (348)
T 1ek6_A 301 -------------EG-D-------VAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPS 342 (348)
T ss_dssp -------------TT-C-------CSEECBCCHHHHHTTCCCCCCCHHHHHHHHHHHHHHCTT
T ss_pred -------------Cc-c-------chhhccCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhccc
Confidence 00 0 124678999999999999999999999999999987643
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-43 Score=351.15 Aligned_cols=293 Identities=17% Similarity=0.194 Sum_probs=236.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--C
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~ 84 (520)
++|+||||||+||||++++++|+++| ++|++ +.|+. .+|+.|.+++.++++ +
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~v~~--------~~r~~-----------------~~D~~d~~~~~~~~~~~~ 55 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRG-DVELV--------LRTRD-----------------ELNLLDSRAVHDFFASER 55 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCT-TEEEE--------CCCTT-----------------TCCTTCHHHHHHHHHHHC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCC-CeEEE--------EecCc-----------------cCCccCHHHHHHHHHhcC
Confidence 45899999999999999999999999 58988 44431 269999999999999 9
Q ss_pred CCEEEEcccCCC----CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccC--CCCCC-
Q 010005 85 ASTVFYVDATDL----NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC--CWKFQ- 157 (520)
Q Consensus 85 ~D~Vih~aa~~~----~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~--~~~p~- 157 (520)
+|+|||+|+... ...++...+++|+.++.+++++|++.+++||||+||.++||... ..+.+|+++. +..|.
T Consensus 56 ~d~vih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~vyg~~~--~~~~~E~~~~~~~~~p~~ 133 (321)
T 1e6u_A 56 IDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLA--KQPMAESELLQGTLEPTN 133 (321)
T ss_dssp CSEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTC--CSSBCGGGTTSSCCCGGG
T ss_pred CCEEEEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccHHHcCCCC--CCCcCccccccCCCCCCC
Confidence 999999999743 23567889999999999999999999999999999999997543 2366777632 23443
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC------CchHHHHHHhcC----C-CceEEecCCCccccccc
Q 010005 158 DLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKP----G-WTKFIIGSGENMSDFTY 226 (520)
Q Consensus 158 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~------~~~~~l~~~~~~----g-~~~~i~g~g~~~~~~i~ 226 (520)
+.|+.+|..+|++++.++.+.|++++++||+.+|||++. .+++.++..+.. | .++.++++|++.++|+|
T Consensus 134 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~i~ 213 (321)
T 1e6u_A 134 EPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLH 213 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEE
T ss_pred CccHHHHHHHHHHHHHHHHHhCCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHHHHHhhhcCCCceEEcCCCCEEEEeEE
Confidence 599999999999999988767999999999999999875 467777776653 3 56777899999999999
Q ss_pred HHHHHHHHHHHHHhhhcc---cccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhc
Q 010005 227 VENVAHAHVCAAEALDSR---MVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLG 303 (520)
Q Consensus 227 v~Dva~ai~~~~~~~~~~---~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~ 303 (520)
++|+|++++.+++..... .+...+++||+++++++++.|+++.+.+.+|.+.+....|.
T Consensus 214 v~Dva~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~------------------ 275 (321)
T 1e6u_A 214 VDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDAS------------------ 275 (321)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETT------------------
T ss_pred HHHHHHHHHHHHhCcccccccccccCCceEEeCCCCCccHHHHHHHHHHHhCCCCceEeCCC------------------
Confidence 999999999999832100 00113689999999999999999999999998754333221
Q ss_pred ccccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 304 LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
.+. ......+|++|+++ |||+|+++++|+++++++||+++..
T Consensus 276 -----~~~--------~~~~~~~d~~k~~~-lG~~p~~~~~~~l~~~~~~~~~~~~ 317 (321)
T 1e6u_A 276 -----KPD--------GTPRKLLDVTRLHQ-LGWYHEISLEAGLASTYQWFLENQD 317 (321)
T ss_dssp -----SCC--------CCSBCCBCCHHHHH-TTCCCCCCHHHHHHHHHHHHHHTC-
T ss_pred -----CCC--------CcccccCCHHHHHh-cCCccCCcHHHHHHHHHHHHHHHHH
Confidence 010 01246789999999 9999999999999999999988654
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-43 Score=357.84 Aligned_cols=316 Identities=17% Similarity=0.177 Sum_probs=244.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhc-CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCC-HHHHHHHHcCCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD-ISQIKKVLEGAS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~-g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d-~~~l~~~l~~~D 86 (520)
|+||||||+||||++++++|+++ | ++|+++++ +..+ ........+++++.+|++| .+.+.++++++|
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r--------~~~~--~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d 69 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDH-YEVYGLDI--------GSDA--ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCD 69 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTT-CEEEEEES--------CCGG--GGGGTTCTTEEEEECCTTTCSHHHHHHHHHCS
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCC-CEEEEEeC--------Ccch--HHHhhcCCCeEEEeccccCcHHHHHhhccCCC
Confidence 58999999999999999999998 8 59999554 3221 1111233578999999998 457888999999
Q ss_pred EEEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccC----C-CCCCC
Q 010005 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC----C-WKFQD 158 (520)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~----~-~~p~~ 158 (520)
+|||+|+... ...++...+++|+.++.+++++|++.+ +||||+||.++||.... .+.+|+.+. + ..|.+
T Consensus 70 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~v~~SS~~v~g~~~~--~~~~e~~~~~~~~~~~~~~~ 146 (345)
T 2bll_A 70 VVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVYGMCSD--KYFDEDHSNLIVGPVNKPRW 146 (345)
T ss_dssp EEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECCGGGGBTCCC--SSBCTTTCCCBCCCTTCGGG
T ss_pred EEEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecHHHcCCCCC--CCcCCcccccccCcccCccc
Confidence 9999999732 224677889999999999999999999 89999999999976432 356676532 1 13556
Q ss_pred hHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC----------CchHHHHHHhcCCCceEEecCCCcccccccHH
Q 010005 159 LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT----------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVE 228 (520)
Q Consensus 159 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~----------~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~ 228 (520)
.|+.+|..+|++++.++++.|++++++||+.+|||+.. ..++.++..+..|+++.++++|++.++|+|++
T Consensus 147 ~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~ 226 (345)
T 2bll_A 147 IYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIR 226 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHH
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHcCCCcEEECCCCEEEEEEEHH
Confidence 89999999999999988777999999999999999864 24667777778888878889999999999999
Q ss_pred HHHHHHHHHHHhhhccccc--CCCceEEEeCCC-CcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhccc
Q 010005 229 NVAHAHVCAAEALDSRMVS--VAGMAFFITNLE-PIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLR 305 (520)
Q Consensus 229 Dva~ai~~~~~~~~~~~~~--~~g~~yni~~~~-~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~ 305 (520)
|+|++++.+++. +. ..+++||+++++ ++|+.|+++.+.+.+|.+.+.+.+|.+....... .....+
T Consensus 227 Dva~a~~~~~~~-----~~~~~~g~~~~i~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~-- 295 (345)
T 2bll_A 227 DGIEALYRIIEN-----AGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE----SSSYYG-- 295 (345)
T ss_dssp HHHHHHHHHHHC-----GGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC-------------
T ss_pred HHHHHHHHHHhh-----ccccCCCceEEeCCCCCCCCHHHHHHHHHHHhCCCcccccCcccccccccc----chhhcc--
Confidence 999999999982 22 468899999986 8999999999999999876655555321000000 000000
Q ss_pred ccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 306 TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
.... ......+|++|++++|||+|+++++|+++++++||+++..
T Consensus 296 ---------~~~~-~~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~~~~~~~~ 339 (345)
T 2bll_A 296 ---------KGYQ-DVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVD 339 (345)
T ss_dssp ---------------CCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHSC
T ss_pred ---------cccc-chhhhcccHHHHHHhcCCCccccHHHHHHHHHHHHHHcCC
Confidence 0000 0124677999999999999999999999999999987644
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-43 Score=357.25 Aligned_cols=310 Identities=22% Similarity=0.245 Sum_probs=242.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC--C
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--A 85 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~--~ 85 (520)
||+||||||+||||+++++.|+++| ++|+++|+.. |..............+++++.+|++|.+++.+++++ +
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~-----~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 74 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQG-IDLIVFDNLS-----RKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMP 74 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCC-----STTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCC
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCC-CEEEEEeCCC-----ccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCC
Confidence 3799999999999999999999999 5999966521 111100000000123588999999999999999998 9
Q ss_pred CEEEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEeecccccccCCCCC--------------CCCC
Q 010005 86 STVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTADVVFDGSHDI--------------HNGD 147 (520)
Q Consensus 86 D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~SS~~vyg~~~~~~--------------~~~~ 147 (520)
|+|||+|+... +..++...+++|+.++.+++++|++.+++ ||||+||.++||...... .+.+
T Consensus 75 d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~ 154 (347)
T 1orr_A 75 DSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYD 154 (347)
T ss_dssp SEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBC
T ss_pred CEEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCcccccccccccccccCcc
Confidence 99999999732 23467889999999999999999999986 999999999997543210 1245
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC-----CchHHHHHHhcCCC-----ceEEecC
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-----QLVPLLVNLAKPGW-----TKFIIGS 217 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~-----~~~~~l~~~~~~g~-----~~~i~g~ 217 (520)
|+. +..|.+.|+.+|..+|++++.++.++|++++++||+.+|||+.. ..++.++..+..++ ++.++++
T Consensus 155 e~~--~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 232 (347)
T 1orr_A 155 EST--QLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGN 232 (347)
T ss_dssp TTS--CCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESS
T ss_pred ccC--CCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCCcCcHHHHHHHHHHhCcccCCCCeEEecC
Confidence 555 44678899999999999999988777999999999999999764 34666666655554 6778899
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC--CcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHH
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE--PIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLV 295 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~--~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~ 295 (520)
|++.++|+|++|+|++++.+++. .+...|++||+++++ +++++|+++.+.+.+|.+.+....|..
T Consensus 233 g~~~~~~i~v~Dva~a~~~~~~~----~~~~~g~~~~v~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~--------- 299 (347)
T 1orr_A 233 GKQVRDVLHAEDMISLYFTALAN----VSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVR--------- 299 (347)
T ss_dssp SCCEEECEEHHHHHHHHHHHHHT----HHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECCC---------
T ss_pred CcceEeeEEHHHHHHHHHHHHhc----cccCCCCEEEeCCCCCCCccHHHHHHHHHHHhCCCCCceeCCCC---------
Confidence 99999999999999999998872 124567899999986 499999999999999987654444410
Q ss_pred HHHHHHhcccccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhc
Q 010005 296 KWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (520)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~ 360 (520)
+ . ......+|++|+++.|||+|+++++|+++++++|+++....
T Consensus 300 --------------~-~-------~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~~~~ 342 (347)
T 1orr_A 300 --------------E-S-------DQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSSILEH 342 (347)
T ss_dssp --------------S-S-------CCSEECBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHC---
T ss_pred --------------C-C-------CcceeecCHHHHHHHHCCCccCCHHHHHHHHHHHHHHHHHh
Confidence 0 0 01245679999999999999989999999999999987653
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-43 Score=352.32 Aligned_cols=296 Identities=18% Similarity=0.196 Sum_probs=239.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
.++|+||||||+||||++++++|+++| ++|+++++...... .....+.......+++++.+|+. ++
T Consensus 5 ~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~Dl~----------~~ 70 (321)
T 3vps_A 5 TLKHRILITGGAGFIGGHLARALVASG-EEVTVLDDLRVPPM---IPPEGTGKFLEKPVLELEERDLS----------DV 70 (321)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT-CCEEEECCCSSCCS---SCCTTSSEEECSCGGGCCHHHHT----------TE
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHCC-CEEEEEecCCcccc---cchhhhhhhccCCCeeEEeCccc----------cC
Confidence 457899999999999999999999999 59999654331000 01111222222345666667765 79
Q ss_pred CEEEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHH
Q 010005 86 STVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (520)
Q Consensus 86 D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~ 162 (520)
|+|||+|+... ...++...++ |+.++.+++++|++.+++||||+||.++||... ..+.+|+. +..|.+.|+.
T Consensus 71 d~vi~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v~~SS~~v~~~~~--~~~~~E~~--~~~p~~~Y~~ 145 (321)
T 3vps_A 71 RLVYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCEVYGQAD--TLPTPEDS--PLSPRSPYAA 145 (321)
T ss_dssp EEEEECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCS--SSSBCTTS--CCCCCSHHHH
T ss_pred CEEEECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCeEEEecCHHHhCCCC--CCCCCCCC--CCCCCChhHH
Confidence 99999999732 2455666777 999999999999999999999999999997553 34678887 5678999999
Q ss_pred HHHHHHHHHHHhcCCCCc-eEEEEecCccccCCCC--CchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHH
Q 010005 163 LKAQAEALVLFANNIDGL-LTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 163 sK~~~E~~~~~~~~~~gi-~~~ilRp~~vyGp~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~ 239 (520)
+|..+|++++.++.++|+ +++++||+.+|||+.. .+++.++..+..++++.++++|++.++|+|++|+|++++.+++
T Consensus 146 sK~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~ 225 (321)
T 3vps_A 146 SKVGLEMVAGAHQRASVAPEVGIVRFFNVYGPGERPDALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALAN 225 (321)
T ss_dssp HHHHHHHHHHHHHHSSSSCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHSEEEEETTSCCEECEEEHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEeccccCcCCCCCChHHHHHHHHHcCCCeEEeCCCCceEceEEHHHHHHHHHHHHh
Confidence 999999999999988899 9999999999999875 4688888888889988899999999999999999999998887
Q ss_pred hhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHH
Q 010005 240 ALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQL 319 (520)
Q Consensus 240 ~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (520)
....| +||+++++++++.|+++.+. .+|.+.+....|.. +.
T Consensus 226 ------~~~~g-~~~i~~~~~~s~~e~~~~i~-~~g~~~~~~~~~~~-----------------------~~-------- 266 (321)
T 3vps_A 226 ------RPLPS-VVNFGSGQSLSVNDVIRILQ-ATSPAAEVARKQPR-----------------------PN-------- 266 (321)
T ss_dssp ------SCCCS-EEEESCSCCEEHHHHHHHHH-TTCTTCEEEEECCC-----------------------TT--------
T ss_pred ------cCCCC-eEEecCCCcccHHHHHHHHH-HhCCCCccccCCCC-----------------------CC--------
Confidence 23346 99999999999999999999 99988655444421 00
Q ss_pred hccceEechHHHHHhcCCCC-CCCHHHHHHHHHHHHHhhhh
Q 010005 320 ASRTRTFDCIAAQKHIGYSP-VVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 320 ~~~~~~~d~~ka~~~LG~~p-~~sleegi~~~~~~~~~~~~ 359 (520)
......+|++|++++|||+| +++++|+++++++||+++..
T Consensus 267 ~~~~~~~d~~k~~~~lG~~p~~~~~~~~l~~~~~~~~~~~~ 307 (321)
T 3vps_A 267 EITEFRADTALQTRQIGERSGGIGIEEGIRLTLEWWQSRDL 307 (321)
T ss_dssp CCSBCCBCCHHHHHHHCCCSCCCCHHHHHHHHHHHHHTSCT
T ss_pred CcceeeccHHHHHHHhCCCCCcCCHHHHHHHHHHHHHhCCC
Confidence 01256789999999999999 88999999999999998654
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-42 Score=346.93 Aligned_cols=306 Identities=17% Similarity=0.134 Sum_probs=240.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC---CCCCCCCCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS---LLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~---~l~~~~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++|+||||||+||||+++++.|+++| ++|+++++.. ... .+.......+++++.+|++|.+++.+++
T Consensus 12 ~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 82 (335)
T 1rpn_A 12 SMTRSALVTGITGQDGAYLAKLLLEKG-YRVHGLVARR--------SSDTRWRLRELGIEGDIQYEDGDMADACSVQRAV 82 (335)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCC--------SSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHH
T ss_pred ccCCeEEEECCCChHHHHHHHHHHHCC-CeEEEEeCCC--------ccccccchhhccccCceEEEECCCCCHHHHHHHH
Confidence 457999999999999999999999999 5999965432 210 0101102346889999999999999999
Q ss_pred cC--CCEEEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHCCC-CEEEEeecccccccCCCCCCCCCCCccCCCCC
Q 010005 83 EG--ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKV-RRLVYNSTADVVFDGSHDIHNGDETLTCCWKF 156 (520)
Q Consensus 83 ~~--~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~gv-kr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p 156 (520)
++ +|+|||+|+... +..++...+++|+.++.+++++|++.++ +||||+||.++||.... .+.+|+. +..|
T Consensus 83 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~~--~~~~E~~--~~~p 158 (335)
T 1rpn_A 83 IKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQA--ERQDENT--PFYP 158 (335)
T ss_dssp HHHCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSS--SSBCTTS--CCCC
T ss_pred HHcCCCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCCC--CCCCccc--CCCC
Confidence 85 699999999732 2457888999999999999999999996 89999999999975432 3678877 5578
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCC-c----hHHHHHHhcCCC-ceEEecCCCcccccccHHHH
Q 010005 157 QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-L----VPLLVNLAKPGW-TKFIIGSGENMSDFTYVENV 230 (520)
Q Consensus 157 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~-~----~~~l~~~~~~g~-~~~i~g~g~~~~~~i~v~Dv 230 (520)
.+.|+.+|..+|++++.++.+++++++++||+.+|||+... . +..++..+..|+ +...+++|++.++|+|++|+
T Consensus 159 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~g~~~~~~i~v~Dv 238 (335)
T 1rpn_A 159 RSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDY 238 (335)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHcCCcEEEEeeCcccCCCCCCCcchHHHHHHHHHHHcCCCceEEeCCCcceeceEEHHHH
Confidence 89999999999999999887779999999999999998642 2 445555566665 34567899999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCC-cccCChHHHHHHHHHHHHHHHHhcccccCC
Q 010005 231 AHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP-FIKLPTGVVWYIILLVKWIHEKLGLRTYNH 309 (520)
Q Consensus 231 a~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~-~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (520)
|++++.+++ .+. +++||+++++++|+.|+++.+.+.+|.+.+ .+.++..
T Consensus 239 a~a~~~~~~-----~~~--~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~----------------------- 288 (335)
T 1rpn_A 239 VEAMWLMLQ-----QDK--ADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPA----------------------- 288 (335)
T ss_dssp HHHHHHHHH-----SSS--CCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGG-----------------------
T ss_pred HHHHHHHHh-----cCC--CCEEEEeCCCCccHHHHHHHHHHHhCCCcccccccccc-----------------------
Confidence 999999998 222 479999999999999999999999997632 1111100
Q ss_pred CCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 310 SLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 310 ~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
...+. ......+|++|++++|||+|+++++|+++++++||+++..
T Consensus 289 -~~~~~----~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 333 (335)
T 1rpn_A 289 -FFRPA----EVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADLRRVS 333 (335)
T ss_dssp -GCCSS----CCCBCCBCTHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred -ccCCC----cchhhcCCHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhc
Confidence 00000 0124567999999999999999999999999999998754
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-42 Score=350.39 Aligned_cols=312 Identities=22% Similarity=0.250 Sum_probs=246.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhc-CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--CC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GA 85 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~-g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~~ 85 (520)
|+||||||+||||+++++.|+++ | ++|+++|+... ......+.+.....+++++.+|++|.+++.++++ ++
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g-~~V~~~~r~~~-----~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 74 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQ-DTVVNIDKLTY-----AGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQP 74 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCS-CEEEEEECCCT-----TCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CEEEEECCCchHhHHHHHHHHhcCC-CeEEEEecCCC-----CCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCC
Confidence 58999999999999999999998 6 59999665321 0011112121123578999999999999999998 89
Q ss_pred CEEEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHC--CCC-------EEEEeecccccccCCCCC--------CC
Q 010005 86 STVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACREC--KVR-------RLVYNSTADVVFDGSHDI--------HN 145 (520)
Q Consensus 86 D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvk-------r~V~~SS~~vyg~~~~~~--------~~ 145 (520)
|+|||+|+... +..++...+++|+.|+.+++++|++. +++ ||||+||.++||...... .+
T Consensus 75 d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~ 154 (361)
T 1kew_A 75 DAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPL 154 (361)
T ss_dssp SEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCC
T ss_pred CEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCC
Confidence 99999999732 23467889999999999999999998 887 999999999997543111 15
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC--CchHHHHHHhcCCCceEEecCCCcccc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
.+|+. +..|.+.|+.+|..+|.+++.++.++|++++++||+.+|||+.. ..++.++..+..++++.++++|++.++
T Consensus 155 ~~E~~--~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (361)
T 1kew_A 155 FTETT--AYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRD 232 (361)
T ss_dssp BCTTS--CCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEETTSCCEEE
T ss_pred CCCCC--CCCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCCCcccHHHHHHHHHHcCCCceEcCCCceeEe
Confidence 67776 45788999999999999999988777999999999999999874 466777777778888788899999999
Q ss_pred cccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhc
Q 010005 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLG 303 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~ 303 (520)
|+|++|+|++++.+++ ....|++||+++++++++.|+++.+.+.+|.+.+... |.. +...
T Consensus 233 ~i~v~Dva~a~~~~~~------~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~-p~~-------------~~~~ 292 (361)
T 1kew_A 233 WLYVEDHARALHMVVT------EGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKAT-SYR-------------EQIT 292 (361)
T ss_dssp EEEHHHHHHHHHHHHH------HCCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSS-CGG-------------GGEE
T ss_pred eEEHHHHHHHHHHHHh------CCCCCCEEEecCCCeeeHHHHHHHHHHHhCCcCcccc-ccc-------------ccee
Confidence 9999999999999987 2356889999999999999999999999987644221 210 0000
Q ss_pred ccccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhh
Q 010005 304 LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (520)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~ 357 (520)
... ..+. ....+.+|++|++++|||+|+++++|+|+++++||+++
T Consensus 293 ~~~-~~~~--------~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~ 337 (361)
T 1kew_A 293 YVA-DRPG--------HDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLAN 337 (361)
T ss_dssp EEC-CCTT--------CCCBCCBCCHHHHHHHCCCCSCCHHHHHHHHHHHHHHC
T ss_pred ecC-CCCc--------ccceeecCHHHHHHHhCCCCccCHHHHHHHHHHHHHhc
Confidence 000 0010 01245689999999999999999999999999999875
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-42 Score=350.19 Aligned_cols=310 Identities=17% Similarity=0.175 Sum_probs=244.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCC-CCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDS-LSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~-~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
++|+||||||+||||++++++|+++| ++|+++++.. ... .+... ....+++++.+|++|.+++.+++++
T Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 78 (357)
T 1rkx_A 8 QGKRVFVTGHTGFKGGWLSLWLQTMG-ATVKGYSLTA--------PTVPSLFETARVADGMQSEIGDIRDQNKLLESIRE 78 (357)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSC--------SSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCC-CeEEEEeCCC--------cccchhhHhhccCCceEEEEccccCHHHHHHHHHh
Confidence 46899999999999999999999999 5999965432 210 00000 0134789999999999999999986
Q ss_pred --CCEEEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHCC-CCEEEEeecccccccCCCCCCCCCCCccCCCCCCC
Q 010005 85 --ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQD 158 (520)
Q Consensus 85 --~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~g-vkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~ 158 (520)
+|+|||+|+... +..++...+++|+.++.+++++|++.+ ++||||+||.++||.... ..+.+|++ +..|.+
T Consensus 79 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~-~~~~~E~~--~~~~~~ 155 (357)
T 1rkx_A 79 FQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEW-IWGYRENE--AMGGYD 155 (357)
T ss_dssp HCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCS-SSCBCTTS--CBCCSS
T ss_pred cCCCEEEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCc-CCCCCCCC--CCCCCC
Confidence 899999999622 235677899999999999999999987 899999999999975432 13567766 456789
Q ss_pred hHHHHHHHHHHHHHHhcCCC---------CceEEEEecCccccCCCC---CchHHHHHHhcCCCceEEecCCCccccccc
Q 010005 159 LMCDLKAQAEALVLFANNID---------GLLTCALRPSNVFGPGDT---QLVPLLVNLAKPGWTKFIIGSGENMSDFTY 226 (520)
Q Consensus 159 ~Y~~sK~~~E~~~~~~~~~~---------gi~~~ilRp~~vyGp~~~---~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~ 226 (520)
.|+.+|..+|++++.++.++ |++++++||+.+|||++. .+++.++..+..|+++. .+++++.++|+|
T Consensus 156 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~v~ 234 (357)
T 1rkx_A 156 PYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVI-IRNPHAIRPWQH 234 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEE-CSCTTCEECCEE
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCccccHHHHHHHHHhcCCCEE-ECCCCCeeccEe
Confidence 99999999999999887543 899999999999999873 57888888888888754 456788999999
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCceEEEeCC--CCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcc
Q 010005 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNL--EPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGL 304 (520)
Q Consensus 227 v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~--~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~ 304 (520)
++|+|++++.+++..... +...+++||++++ +++++.|+++.+.+.+|.+.+. ..+..
T Consensus 235 v~Dva~a~~~~~~~~~~~-~~~~~~~~ni~~~~~~~~s~~e~~~~i~~~~g~~~~~-~~~~~------------------ 294 (357)
T 1rkx_A 235 VLEPLSGYLLLAQKLYTD-GAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASW-QLDGN------------------ 294 (357)
T ss_dssp THHHHHHHHHHHHHHHHT-CGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCE-EC---------------------
T ss_pred HHHHHHHHHHHHHhhhhc-CCCCCceEEECCCCCCcccHHHHHHHHHHHhCCCCcc-ccCCC------------------
Confidence 999999999988742111 1245789999974 6899999999999999986542 22210
Q ss_pred cccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhc
Q 010005 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (520)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~ 360 (520)
+ .+ .......+|++|++++|||+|+++++|+|+++++||+++...
T Consensus 295 -----~--~~----~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 339 (357)
T 1rkx_A 295 -----A--HP----HEAHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWLSG 339 (357)
T ss_dssp ---------------CCCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred -----C--CC----cCcccccCCHHHHHHHhCCCcCCcHHHHHHHHHHHHHHHhcC
Confidence 0 00 011256789999999999999999999999999999887654
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-41 Score=349.65 Aligned_cols=317 Identities=18% Similarity=0.191 Sum_probs=241.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHH-hcCCcEEEEecCCcccccCCCCC---CCCCC----CCCC---CCC---cEEEEecCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLL-ELGKCIVRVTDSTQSLQLDPSES---NSLLP----DSLS---SGR---AEYHQVDVR 73 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~-~~g~~~V~~~D~~~~~~l~r~~~---~~~l~----~~~~---~~~---v~~~~~Dl~ 73 (520)
+|+||||||+||||++++++|+ ++| ++|+++|+..... ..... ...+. +... ..+ ++++.+|++
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 79 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTN-HSVVIVDSLVGTH-GKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVR 79 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCC-CEEEEEECCTTTT-TCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCC-CEEEEEecCCccc-ccccccchHHHHHHHHHHhhccccccCCceEEEEECCCC
Confidence 4799999999999999999999 999 5999966542100 00000 00000 0000 124 889999999
Q ss_pred CHHHHHHHHc--C-CCEEEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCC-----C
Q 010005 74 DISQIKKVLE--G-ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSH-----D 142 (520)
Q Consensus 74 d~~~l~~~l~--~-~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~-----~ 142 (520)
|.+++.++++ + +|+|||+|+... +..++...+++|+.++.+++++|++.+++||||+||.++||.... .
T Consensus 80 d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS~~v~g~~~~~~~~~~ 159 (397)
T 1gy8_A 80 NEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTN 159 (397)
T ss_dssp CHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----C
T ss_pred CHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECCHHHhCCCCccccccc
Confidence 9999999998 7 999999999732 234678899999999999999999999999999999999975431 1
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCC-----------CCchHHHH----HHhc
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGD-----------TQLVPLLV----NLAK 207 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~-----------~~~~~~l~----~~~~ 207 (520)
..+.+|++ +..|.+.|+.+|+.+|++++.++.++|++++++||+.+|||+. ..+++.+. ..+.
T Consensus 160 ~~~~~E~~--~~~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 237 (397)
T 1gy8_A 160 AEPIDINA--KKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIA 237 (397)
T ss_dssp CCCBCTTS--CCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHS
T ss_pred ccCcCccC--CCCCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCCccccccccccchhHHHHHHHHHHHHHHH
Confidence 34678887 4578899999999999999998877799999999999999963 24556555 2333
Q ss_pred CCC------------ceEEec------CCCcccccccHHHHHHHHHHHHHhhhcccccCCC---ceEEEeCCCCcCHHHH
Q 010005 208 PGW------------TKFIIG------SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAG---MAFFITNLEPIKFWDF 266 (520)
Q Consensus 208 ~g~------------~~~i~g------~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g---~~yni~~~~~~t~~el 266 (520)
.+. ++.+++ +|++.++|+|++|+|++++.+++......+...+ ++||+++++++++.|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~ 317 (397)
T 1gy8_A 238 PDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREV 317 (397)
T ss_dssp CC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHHH
T ss_pred hcCccccccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHHhcccccccccccCCCcEEEeCCCCcccHHHH
Confidence 443 466776 7889999999999999999998732110000013 7999999999999999
Q ss_pred HHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccceEechHHHHHhcCCCCCC-CHHH
Q 010005 267 LSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVV-SLEE 345 (520)
Q Consensus 267 ~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~-slee 345 (520)
++.+.+.+|.+.+....|.. . .. .....+|++|++++|||+|++ +++|
T Consensus 318 ~~~i~~~~g~~~~~~~~~~~-------------------~-~~-----------~~~~~~d~~k~~~~lG~~p~~~~l~e 366 (397)
T 1gy8_A 318 IEVARKTTGHPIPVRECGRR-------------------E-GD-----------PAYLVAASDKAREVLGWKPKYDTLEA 366 (397)
T ss_dssp HHHHHHHHCCCCCEEEECCC-------------------T-TC-----------CSEECBCCHHHHHHTCCCCSCCSHHH
T ss_pred HHHHHHHhCCCCCeeeCCCC-------------------C-Cc-----------ccccccCHHHHHHHhCCCCCcCCHHH
Confidence 99999999987554333310 0 00 014678999999999999999 9999
Q ss_pred HHHHHHHHHHhhhh
Q 010005 346 GVSSTIQSFSHLAR 359 (520)
Q Consensus 346 gi~~~~~~~~~~~~ 359 (520)
+++++++||+++..
T Consensus 367 ~l~~~~~~~~~~~~ 380 (397)
T 1gy8_A 367 IMETSWKFQRTHPN 380 (397)
T ss_dssp HHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHhccc
Confidence 99999999988644
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=344.73 Aligned_cols=302 Identities=21% Similarity=0.232 Sum_probs=240.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
.+++|+||||||+||||++++++|+++| ++|+++++... +.. ..+.......+++++.+|+.|.. +.+
T Consensus 24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~----~~~--~~~~~~~~~~~~~~~~~D~~~~~-----~~~ 91 (343)
T 2b69_A 24 EKDRKRILITGGAGFVGSHLTDKLMMDG-HEVTVVDNFFT----GRK--RNVEHWIGHENFELINHDVVEPL-----YIE 91 (343)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSS----CCG--GGTGGGTTCTTEEEEECCTTSCC-----CCC
T ss_pred ccCCCEEEEEcCccHHHHHHHHHHHHCC-CEEEEEeCCCc----cch--hhhhhhccCCceEEEeCccCChh-----hcC
Confidence 3457899999999999999999999999 59999665321 000 11112222457899999998863 568
Q ss_pred CCEEEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCcc---CCCCCCC
Q 010005 85 ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLT---CCWKFQD 158 (520)
Q Consensus 85 ~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~---~~~~p~~ 158 (520)
+|+|||+|+... ...++...+++|+.++.+++++|++.++ |+||+||.++||... ..+.+|+.+ .+..|.+
T Consensus 92 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~g~~~--~~~~~E~~~~~~~~~~~~~ 168 (343)
T 2b69_A 92 VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPE--VHPQSEDYWGHVNPIGPRA 168 (343)
T ss_dssp CSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGGBSCS--SSSBCTTCCCBCCSSSTTH
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC-cEEEECcHHHhCCCC--CCCCcccccccCCCCCCCC
Confidence 999999999732 2356788899999999999999999997 999999999997543 235666632 1446678
Q ss_pred hHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC----CchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHH
Q 010005 159 LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT----QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234 (520)
Q Consensus 159 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~----~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai 234 (520)
.|+.+|..+|++++.++.+.|++++++||+.+|||+.. ..++.++..+..++++.++++|++.++|+|++|+|+++
T Consensus 169 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~ 248 (343)
T 2b69_A 169 CYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGL 248 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCCcEEEEEEcceeCcCCCCCcccHHHHHHHHHHcCCCceEcCCCCeEEeeEeHHHHHHHH
Confidence 89999999999999988777999999999999999753 46777777777888878899999999999999999999
Q ss_pred HHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchH
Q 010005 235 VCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSAC 314 (520)
Q Consensus 235 ~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (520)
+.+++ . ..+++||+++++++++.|+++.+.+.+|.+.+...+|... ..+
T Consensus 249 ~~~~~------~-~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~--------------------~~~---- 297 (343)
T 2b69_A 249 VALMN------S-NVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQ--------------------DDP---- 297 (343)
T ss_dssp HHHHT------S-SCCSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCCT--------------------TCC----
T ss_pred HHHHh------c-CCCCeEEecCCCCCcHHHHHHHHHHHhCCCCCceeCCCCC--------------------CCC----
Confidence 98886 2 2367999999999999999999999999876554444210 000
Q ss_pred HHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 315 YIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 315 ~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
....+|++|++++|||+|+++++|+|+++++||++...
T Consensus 298 -------~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 335 (343)
T 2b69_A 298 -------QKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELE 335 (343)
T ss_dssp -------CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred -------ceecCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 14567999999999999999999999999999987654
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=337.18 Aligned_cols=276 Identities=18% Similarity=0.192 Sum_probs=233.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--CCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~~D 86 (520)
|+||||||+||||+++++.|+++| ++|++ +.|. .+|+.|.+++.++++ ++|
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g-~~V~~--------~~r~------------------~~D~~d~~~~~~~~~~~~~d 58 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEE-YDIYP--------FDKK------------------LLDITNISQVQQVVQEIRPH 58 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTT-EEEEE--------ECTT------------------TSCTTCHHHHHHHHHHHCCS
T ss_pred eEEEEECCCCHHHHHHHHHHHhCC-CEEEE--------eccc------------------ccCCCCHHHHHHHHHhcCCC
Confidence 599999999999999999999999 69999 4441 279999999999998 799
Q ss_pred EEEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHH
Q 010005 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (520)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~s 163 (520)
+|||+|+... +..++...+++|+.++.+++++|++.++ ||||+||.++||... ..+.+|++ +..|.+.|+.+
T Consensus 59 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~v~~SS~~vy~~~~--~~~~~E~~--~~~p~~~Y~~s 133 (287)
T 3sc6_A 59 IIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGA-KLVYISTDYVFQGDR--PEGYDEFH--NPAPINIYGAS 133 (287)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCCCC--SSCBCTTS--CCCCCSHHHHH
T ss_pred EEEECCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEchhhhcCCCC--CCCCCCCC--CCCCCCHHHHH
Confidence 9999999832 3357889999999999999999999998 799999999997543 24788887 56889999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhc
Q 010005 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (520)
Q Consensus 164 K~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~ 243 (520)
|..+|++++.++. +++++||+.+|||+...+++.+...+..++++.+.++ +.++|+|++|+|++++.+++
T Consensus 134 K~~~E~~~~~~~~----~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~Dva~~~~~~~~---- 203 (287)
T 3sc6_A 134 KYAGEQFVKELHN----KYFIVRTSWLYGKYGNNFVKTMIRLGKEREEISVVAD--QIGSPTYVADLNVMINKLIH---- 203 (287)
T ss_dssp HHHHHHHHHHHCS----SEEEEEECSEECSSSCCHHHHHHHHHTTCSEEEEECS--CEECCEEHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHhCC----CcEEEeeeeecCCCCCcHHHHHHHHHHcCCCeEeecC--cccCceEHHHHHHHHHHHHh----
Confidence 9999999999865 5799999999999988889999999999998777754 88999999999999999988
Q ss_pred ccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccc
Q 010005 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRT 323 (520)
Q Consensus 244 ~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (520)
.+. +++||+++++++++.|+++.+.+.+|.+.+...+|.... .... ..+ ..
T Consensus 204 -~~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~--------------~~~~-~~~-----------~~ 254 (287)
T 3sc6_A 204 -TSL--YGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEF--------------GAAA-ARP-----------KY 254 (287)
T ss_dssp -SCC--CEEEECCCBSCEEHHHHHHHHHHHHTCCCEEEEECHHHH--------------CCSS-CCC-----------SB
T ss_pred -CCC--CCeEEEcCCCcccHHHHHHHHHHHcCCCcceeeeehhhc--------------Cccc-CCC-----------Cc
Confidence 222 779999999999999999999999998866555653311 1000 000 24
Q ss_pred eEechHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Q 010005 324 RTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSH 356 (520)
Q Consensus 324 ~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~ 356 (520)
..+|++|++ .|||+|.++++|+++++++|+++
T Consensus 255 ~~~d~~k~~-~lg~~p~~~~~~~l~~~~~~~~~ 286 (287)
T 3sc6_A 255 SIFQHNMLR-LNGFLQMPSWEEGLERFFIETKS 286 (287)
T ss_dssp CCBCCHHHH-HTTCCCCCBHHHHHHHHHHHTC-
T ss_pred ccccHHHHH-hhCCCCCccHHHHHHHHHHHHhc
Confidence 568999999 79999999999999999999865
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-42 Score=344.31 Aligned_cols=295 Identities=14% Similarity=0.119 Sum_probs=232.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhc--CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLEL--GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~--g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
+|+||||||+||||++++++|+++ | ++|+++|+ +.....+ ..+++++.+|++|.+++.++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r--------~~~~~~~-----~~~~~~~~~D~~d~~~~~~~~~~~ 67 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGT-ENVIASDI--------RKLNTDV-----VNSGPFEVVNALDFNQIEHLVEVH 67 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCG-GGEEEEES--------CCCSCHH-----HHSSCEEECCTTCHHHHHHHHHHT
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCC-CEEEEEcC--------CCccccc-----cCCCceEEecCCCHHHHHHHHhhc
Confidence 579999999999999999999999 8 59999554 3221111 1256789999999999999998
Q ss_pred CCCEEEEcccCCC--CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHH
Q 010005 84 GASTVFYVDATDL--NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (520)
Q Consensus 84 ~~D~Vih~aa~~~--~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~ 161 (520)
++|+|||+|+... ...++...+++|+.++.+++++|++.+++||||+||.++||.... ..+.+|+. +..|.+.|+
T Consensus 68 ~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~~~e~~--~~~~~~~Y~ 144 (312)
T 2yy7_A 68 KITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPTTP-KENTPQYT--IMEPSTVYG 144 (312)
T ss_dssp TCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCEEGGGCCTTSC-SSSBCSSC--BCCCCSHHH
T ss_pred CCCEEEECCccCCCchhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHHhCCCCC-CCCccccC--cCCCCchhH
Confidence 8999999999732 235678899999999999999999999999999999999976432 23566766 567889999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC------C-chHHHHHHhcCCCceEEecCCCcccccccHHHHHHHH
Q 010005 162 DLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------Q-LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234 (520)
Q Consensus 162 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~------~-~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai 234 (520)
.+|..+|++++.++.++|++++++||+.+|||+.. . ..+.+...+..+. +..++++++.++|+|++|+|+++
T Consensus 145 ~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~v~Dva~a~ 223 (312)
T 2yy7_A 145 ISKQAGERWCEYYHNIYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYKAIADKK-YECFLSSETKMPMMYMDDAIDAT 223 (312)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEECEEECEEECSSSCCCSCTTTHHHHHHHHHHHTSE-EEESSCTTCCEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEeCCeEecCCCCCCCchhhhHHHHHHHHHcCCC-eEEecCCCceeeeeeHHHHHHHH
Confidence 99999999999988777999999999999997532 1 3445555555554 56778889999999999999999
Q ss_pred HHHHHhhhcccccC---CCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCC
Q 010005 235 VCAAEALDSRMVSV---AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSL 311 (520)
Q Consensus 235 ~~~~~~~~~~~~~~---~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (520)
+.+++. +.. .+++||+++ +++|++|+++.+.+.+|.. .+... |.
T Consensus 224 ~~~~~~-----~~~~~~~~~~~ni~~-~~~s~~e~~~~i~~~~~~~--~i~~~-------------------------~~ 270 (312)
T 2yy7_A 224 INIMKA-----PVEKIKIHSSYNLAA-MSFTPTEIANEIKKHIPEF--TITYE-------------------------PD 270 (312)
T ss_dssp HHHHHS-----CGGGCCCSSCEECCS-EEECHHHHHHHHHTTCTTC--EEEEC-------------------------CC
T ss_pred HHHHhC-----cccccccCceEEeCC-CccCHHHHHHHHHHHCCCC--ceEec-------------------------cC
Confidence 999983 222 248999997 8899999999999998831 11110 10
Q ss_pred chHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 010005 312 SACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFS 355 (520)
Q Consensus 312 ~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~ 355 (520)
...... ......+|++|++++|||+|+++++|+|+++++||+
T Consensus 271 -~~~~~~-~~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~~~k 312 (312)
T 2yy7_A 271 -FRQKIA-DSWPASIDDSQAREDWDWKHTFDLESMTKDMIEHLS 312 (312)
T ss_dssp -THHHHH-TTSCSSBCCHHHHHHHCCCCCCCHHHHHHHHHHHHC
T ss_pred -cccccc-ccccccCCHHHHHHHcCCCCCCCHHHHHHHHHHHhC
Confidence 011110 112356899999999999999999999999999984
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-41 Score=344.63 Aligned_cols=297 Identities=18% Similarity=0.150 Sum_probs=238.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
++|+||||||+||||+++++.|+++|.++|+++++. ........ + .++. +.+|+.|.+.+.++++
T Consensus 45 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~--------~~~~~~~~-~--~~~~-~~~d~~~~~~~~~~~~~~~ 112 (357)
T 2x6t_A 45 EGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNL--------KDGTKFVN-L--VDLN-IADYMDKEDFLIQIMAGEE 112 (357)
T ss_dssp ---CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECC--------SSGGGGGG-T--TTSC-CSEEEEHHHHHHHHHTTCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecC--------CCcchhhc-c--cCce-EeeecCcHHHHHHHHhhcc
Confidence 458999999999999999999999994489995543 22110111 1 1233 6799999999999997
Q ss_pred --CCCEEEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChH
Q 010005 84 --GASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLM 160 (520)
Q Consensus 84 --~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y 160 (520)
++|+|||+|+.. ....+++..+++|+.++.+++++|++.++ ||||+||.++||... ..+.+|+. +..|.+.|
T Consensus 113 ~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~-r~V~~SS~~v~g~~~--~~~~~E~~--~~~p~~~Y 187 (357)
T 2x6t_A 113 FGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRT--SDFIESRE--YEKPLNVF 187 (357)
T ss_dssp CSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGCSCS--SCCCSSGG--GCCCSSHH
T ss_pred cCCCCEEEECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcchHHhCCCC--CCCcCCcC--CCCCCChh
Confidence 599999999983 34567889999999999999999999999 999999999997543 23678877 56788999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC------CchHHHHHHhcCCCceEEecCCCc-ccccccHHHHHHH
Q 010005 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSGEN-MSDFTYVENVAHA 233 (520)
Q Consensus 161 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~------~~~~~l~~~~~~g~~~~i~g~g~~-~~~~i~v~Dva~a 233 (520)
+.+|..+|++++.++.+.|++++++||+.+|||++. ..++.++..+..++++.++++|++ .++|+|++|+|++
T Consensus 188 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a 267 (357)
T 2x6t_A 188 GYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADV 267 (357)
T ss_dssp HHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHHHTTCCCEEETTGGGCEECEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecCeEECCCCCCCcccchHHHHHHHHHHcCCCcEEeCCCCcceEccEEHHHHHHH
Confidence 999999999999998888999999999999999864 567778888888888788899989 9999999999999
Q ss_pred HHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCC-CCcccCChHHHHHHHHHHHHHHHHhcccccCCCCc
Q 010005 234 HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQ-RPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLS 312 (520)
Q Consensus 234 i~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~-~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (520)
++.+++. +. +++||+++++++++.|+++.+.+.+|.+ .+.++.|.+. .
T Consensus 268 i~~~~~~-----~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~--------------~---------- 316 (357)
T 2x6t_A 268 NLWFLEN-----GV--SGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKL--------------K---------- 316 (357)
T ss_dssp HHHHHHH-----CC--CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEECCCGGG--------------T----------
T ss_pred HHHHHhc-----CC--CCeEEecCCCcccHHHHHHHHHHHcCCCCceecCCCccc--------------c----------
Confidence 9999982 22 8899999999999999999999999987 2223333210 0
Q ss_pred hHHHHHHhccceEechHHHHHhcCC-CCCCCHHHHHHHHHHHHHhh
Q 010005 313 ACYIVQLASRTRTFDCIAAQKHIGY-SPVVSLEEGVSSTIQSFSHL 357 (520)
Q Consensus 313 ~~~~~~~~~~~~~~d~~ka~~~LG~-~p~~sleegi~~~~~~~~~~ 357 (520)
........+|++|+++ ||| .|.++++|+++++++||+++
T Consensus 317 -----~~~~~~~~~~~~k~~~-lG~~~~~~~l~e~l~~~~~~~~~~ 356 (357)
T 2x6t_A 317 -----GRYQAFTQADLTNLRA-AGYDKPFKTVAEGVTEYMAWLNRD 356 (357)
T ss_dssp -----TSCCSBCCCCCHHHHH-TTCCCCCCCHHHHHHHHHHHHC--
T ss_pred -----cccccccccCHHHHHH-cCCCCCCCCHHHHHHHHHHHHhhc
Confidence 0011245679999987 999 78889999999999999763
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-41 Score=350.63 Aligned_cols=314 Identities=15% Similarity=0.123 Sum_probs=241.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCccccc------CCCCCCC----CCCC--CCCCCCcEEEEecCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQL------DPSESNS----LLPD--SLSSGRAEYHQVDVRD 74 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l------~r~~~~~----~l~~--~~~~~~v~~~~~Dl~d 74 (520)
++++||||||+||||++++++|+++| ++|+++|+...... .+-.... .+.. .....+++++.+|++|
T Consensus 10 ~~~~vlVTG~tGfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~d 88 (404)
T 1i24_A 10 HGSRVMVIGGDGYCGWATALHLSKKN-YEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICD 88 (404)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTS
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHhCC-CeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCCC
Confidence 57899999999999999999999999 59999765321000 0000000 0000 0012468899999999
Q ss_pred HHHHHHHHcC--CCEEEEcccCCC---CCcch---hhHHhhhHHHHHHHHHHHHHCCC-CEEEEeecccccccCCCCCCC
Q 010005 75 ISQIKKVLEG--ASTVFYVDATDL---NTDDF---YNCYMIIVQGAKNVVTACRECKV-RRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 75 ~~~l~~~l~~--~D~Vih~aa~~~---~~~~~---~~~~~~Nv~gt~~ll~aa~~~gv-kr~V~~SS~~vyg~~~~~~~~ 145 (520)
.+++.+++++ +|+|||+||... ...++ ...+++|+.|+.+++++|++.++ +||||+||.++||... .+
T Consensus 89 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~vyg~~~---~~ 165 (404)
T 1i24_A 89 FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPN---ID 165 (404)
T ss_dssp HHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCS---SC
T ss_pred HHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHHhCCCC---CC
Confidence 9999999987 999999999732 11233 24789999999999999999987 5999999999997543 24
Q ss_pred CCCCc------------cCCCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC-----------------
Q 010005 146 GDETL------------TCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT----------------- 196 (520)
Q Consensus 146 ~~E~~------------~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~----------------- 196 (520)
.+|+. +.+..|.+.|+.||..+|++++.++.++|++++++||+.||||++.
T Consensus 166 ~~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~~~~~~~~~~~~~~ 245 (404)
T 1i24_A 166 IEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAV 245 (404)
T ss_dssp BCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTT
T ss_pred CCccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCCCccccccccccccccccc
Confidence 55541 1256788999999999999999887767999999999999999862
Q ss_pred --CchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCC--ceEEEeCCCCcCHHHHHHHHHH
Q 010005 197 --QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAG--MAFFITNLEPIKFWDFLSIILE 272 (520)
Q Consensus 197 --~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g--~~yni~~~~~~t~~el~~~i~~ 272 (520)
..++.++..+..|+++.++++|++.++|+|++|+|++++.+++ .+...| ++||+++ +++++.|+++.+.+
T Consensus 246 ~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~~l~-----~~~~~g~~~~yni~~-~~~s~~e~~~~i~~ 319 (404)
T 1i24_A 246 FGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIA-----NPAKAGEFRVFNQFT-EQFSVNELASLVTK 319 (404)
T ss_dssp TCCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHH-----SCCCTTCEEEEEECS-EEEEHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHcCCeeEEeCCCCceECcEEHHHHHHHHHHHHh-----CcccCCCceEEEECC-CCCcHHHHHHHHHH
Confidence 4678888888888888888999999999999999999999998 233345 7999998 88999999999999
Q ss_pred H---cCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHH
Q 010005 273 G---LGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSS 349 (520)
Q Consensus 273 ~---~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~ 349 (520)
. +|.+.+....|.+. . ........+|++|++ +|||+|++++++++++
T Consensus 320 ~~~~~g~~~~~~~~p~~~----------------------~-------~~~~~~~~~d~~k~~-~LG~~p~~~~~~~l~~ 369 (404)
T 1i24_A 320 AGSKLGLDVKKMTVPNPR----------------------V-------EAEEHYYNAKHTKLM-ELGLEPHYLSDSLLDS 369 (404)
T ss_dssp HHHTTTCCCCEEEECCSS----------------------C-------SCSSCCCCBCCCHHH-HTTCCCCCCCHHHHHH
T ss_pred HHHhhCCCccccccCccc----------------------C-------ccccceEecCHHHHH-HcCCCcCcCHHHHHHH
Confidence 8 77765544444210 0 000123567999998 5999999999999999
Q ss_pred HHHHHHhhhhc
Q 010005 350 TIQSFSHLARD 360 (520)
Q Consensus 350 ~~~~~~~~~~~ 360 (520)
+++|++.+...
T Consensus 370 ~~~~~~~~~~~ 380 (404)
T 1i24_A 370 LLNFAVQFKDR 380 (404)
T ss_dssp HHHHHHHTGGG
T ss_pred HHHHHHhhhhc
Confidence 99999876654
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=336.95 Aligned_cols=280 Identities=16% Similarity=0.158 Sum_probs=224.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC-C
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-A 85 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~-~ 85 (520)
++|+||||| +||||+++++.|+++| ++|+++ .|+... ...+++++.+|+.|.+++.+++++ +
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~g-~~V~~~--------~r~~~~-------~~~~~~~~~~Dl~d~~~~~~~~~~~~ 64 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQG-HEVTGL--------RRSAQP-------MPAGVQTLIADVTRPDTLASIVHLRP 64 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTT-CCEEEE--------ECTTSC-------CCTTCCEEECCTTCGGGCTTGGGGCC
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCC-CEEEEE--------eCCccc-------cccCCceEEccCCChHHHHHhhcCCC
Confidence 468999999 5999999999999999 599994 444331 125789999999999999999988 9
Q ss_pred CEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHH
Q 010005 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKA 165 (520)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~ 165 (520)
|+|||+|+.. ..++...+++|+.++.+++++|++.+++||||+||.++||... ..+.+|++ +..|.+.|+.+|.
T Consensus 65 d~vih~a~~~--~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~--~~~~~E~~--~~~p~~~Y~~sK~ 138 (286)
T 3gpi_A 65 EILVYCVAAS--EYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYGQEV--EEWLDEDT--PPIAKDFSGKRML 138 (286)
T ss_dssp SEEEECHHHH--HHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGGGCCCCC--SSEECTTS--CCCCCSHHHHHHH
T ss_pred CEEEEeCCCC--CCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccEEEcCCC--CCCCCCCC--CCCCCChhhHHHH
Confidence 9999999873 2456778899999999999999999999999999999997543 33668877 5678999999999
Q ss_pred HHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhccc
Q 010005 166 QAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRM 245 (520)
Q Consensus 166 ~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~ 245 (520)
.+|++ +.+ ++++++||+.+|||+... ++..+.. +. .++++++.++|+|++|+|++++.+++...
T Consensus 139 ~~E~~-~~~-----~~~~ilR~~~v~G~~~~~----~~~~~~~-~~--~~~~~~~~~~~i~v~Dva~~~~~~~~~~~--- 202 (286)
T 3gpi_A 139 EAEAL-LAA-----YSSTILRFSGIYGPGRLR----MIRQAQT-PE--QWPARNAWTNRIHRDDGAAFIAYLIQQRS--- 202 (286)
T ss_dssp HHHHH-GGG-----SSEEEEEECEEEBTTBCH----HHHHTTC-GG--GSCSSBCEECEEEHHHHHHHHHHHHHHHT---
T ss_pred HHHHH-Hhc-----CCeEEEecccccCCCchh----HHHHHHh-cc--cCCCcCceeEEEEHHHHHHHHHHHHhhhc---
Confidence 99999 654 899999999999998763 4444444 32 34788899999999999999999998321
Q ss_pred ccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccceE
Q 010005 246 VSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRT 325 (520)
Q Consensus 246 ~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (520)
....+++||+++++++++.|+++.+.+.+|.+.+....| .......
T Consensus 203 ~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~----------------------------------~~~~~~~ 248 (286)
T 3gpi_A 203 HAVPERLYIVTDNQPLPVHDLLRWLADRQGIAYPAGATP----------------------------------PVQGNKK 248 (286)
T ss_dssp TSCCCSEEEECCSCCEEHHHHHHHHHHHTTCCCCCSCCC----------------------------------CBCSSCE
T ss_pred cCCCCceEEEeCCCCCCHHHHHHHHHHHcCCCCCCCCCc----------------------------------ccCCCeE
Confidence 146688999999999999999999999999875432211 0113577
Q ss_pred echHHHHHhcCCCCCC-CHHHHHHHHHHHHHhhhhc
Q 010005 326 FDCIAAQKHIGYSPVV-SLEEGVSSTIQSFSHLARD 360 (520)
Q Consensus 326 ~d~~ka~~~LG~~p~~-sleegi~~~~~~~~~~~~~ 360 (520)
+|++|++ .|||+|++ +++|+++++++|+......
T Consensus 249 ~d~~k~~-~lG~~p~~~~l~e~l~~~~~~~~~~~~~ 283 (286)
T 3gpi_A 249 LSNARLL-ASGYQLIYPDYVSGYGALLAAMREGHHH 283 (286)
T ss_dssp ECCHHHH-HTTCCCSSCSHHHHHHHHHHHHTC----
T ss_pred eeHHHHH-HcCCCCcCCcHHHHHHHHHHHHhccccc
Confidence 8999998 79999999 6999999999999886554
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-41 Score=340.58 Aligned_cols=306 Identities=20% Similarity=0.221 Sum_probs=235.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCC--CCCCCCcEEEEecCCCHHHHHHHHc--C
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYHQVDVRDISQIKKVLE--G 84 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~--~~~~~~v~~~~~Dl~d~~~l~~~l~--~ 84 (520)
|+||||||+||||++++++|+++| ++|+++|+.. +... ..+.. .....+++++.+|++|.+++.++++ +
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 73 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVIILDNLC-----NSKR-SVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHA 73 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCS-----SCCT-THHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEecCC-----Ccch-hHHHHHHhhcCCcceEEEccCCCHHHHHHHhhccC
Confidence 589999999999999999999999 5999966432 1111 00000 0012357889999999999999987 5
Q ss_pred CCEEEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCC-CChH
Q 010005 85 ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF-QDLM 160 (520)
Q Consensus 85 ~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p-~~~Y 160 (520)
+|+|||+||... ...++...+++|+.++.+++++|++.+++||||+||.++||... ..+.+|+.+ ..| .+.|
T Consensus 74 ~D~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~--~~~~~e~~~--~~~~~~~Y 149 (338)
T 1udb_A 74 IDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNP--KIPYVESFP--TGTPQSPY 149 (338)
T ss_dssp CSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCC--SSSBCTTSC--CCCCSSHH
T ss_pred CCEEEECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccHHHhCCCC--CCCcCcccC--CCCCCChH
Confidence 999999999732 22456778999999999999999999999999999999997543 336677763 333 7899
Q ss_pred HHHHHHHHHHHHHhcCCC-CceEEEEecCccccCCC------------CCchHHHHHHhc-CCCceEEec------CCCc
Q 010005 161 CDLKAQAEALVLFANNID-GLLTCALRPSNVFGPGD------------TQLVPLLVNLAK-PGWTKFIIG------SGEN 220 (520)
Q Consensus 161 ~~sK~~~E~~~~~~~~~~-gi~~~ilRp~~vyGp~~------------~~~~~~l~~~~~-~g~~~~i~g------~g~~ 220 (520)
+.||..+|++++.++.++ +++++++||+++|||+. ..+++.+...+. .+.++.+++ +|++
T Consensus 150 ~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 229 (338)
T 1udb_A 150 GKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTG 229 (338)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSC
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEeeceecCCCcccccccccccchhhHHHHHHHHHHhcCCCcEEecCcccCCCCce
Confidence 999999999999987655 89999999999999842 234566665554 455555655 5788
Q ss_pred ccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHH
Q 010005 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHE 300 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~ 300 (520)
.++|+|++|+|++++.+++... ....+++||+++++++|++|+++.+.+.+|.+.+....|.
T Consensus 230 ~~~~i~v~Dva~a~~~~l~~~~---~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~--------------- 291 (338)
T 1udb_A 230 VRDYIHVMDLADGHVVAMEKLA---NKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPR--------------- 291 (338)
T ss_dssp EECEEEHHHHHHHHHHHHHHHT---TCCEEEEEEESCSCCEEHHHHHHHHHHHHTSCCCEEEECC---------------
T ss_pred eeeeEEHHHHHHHHHHHHhhhh---ccCCCcEEEecCCCceeHHHHHHHHHHHhCCCCcceeCCC---------------
Confidence 9999999999999999987321 0122379999999999999999999999998654333331
Q ss_pred HhcccccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 301 KLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
.+. . .....+|++|++++|||+|+++++|+++++++||+++..
T Consensus 292 --------~~~-~-------~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~w~~~~~~ 334 (338)
T 1udb_A 292 --------REG-D-------LPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQ 334 (338)
T ss_dssp --------CTT-C-------CSBCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCTT
T ss_pred --------CCC-c-------hhhhhcCHHHHHHHcCCCcCCCHHHHHHHHHHHHHhccc
Confidence 000 0 013567999999999999999999999999999987543
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=338.51 Aligned_cols=294 Identities=18% Similarity=0.157 Sum_probs=218.7
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC-----
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG----- 84 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~----- 84 (520)
+||||||+||||++++++|+++|.++|+++++ .+....... + .+++ +.+|+.|.+.+.+++++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r--------~~~~~~~~~-~--~~~~-~~~d~~~~~~~~~~~~~~~~~~ 68 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDN--------LKDGTKFVN-L--VDLN-IADYMDKEDFLIQIMAGEEFGD 68 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEEC--------CSSGGGGHH-H--HTSC-CSEEEEHHHHHHHHHTTCCCSS
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEcc--------CCCCchhhh-c--Ccce-eccccccHHHHHHHHhccccCC
Confidence 59999999999999999999999448999544 322110100 0 1223 67999999999999985
Q ss_pred CCEEEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHH
Q 010005 85 ASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (520)
Q Consensus 85 ~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~s 163 (520)
+|+|||+|+.. ....++...+++|+.++.+++++|++.++ ||||+||.++||.... .+.+|++ +..|.+.|+.+
T Consensus 69 ~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~g~~~~--~~~~E~~--~~~p~~~Y~~s 143 (310)
T 1eq2_A 69 VEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTS--DFIESRE--YEKPLNVYGYS 143 (310)
T ss_dssp CCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGTTCCS--CBCSSGG--GCCCSSHHHHH
T ss_pred CcEEEECcccccCcccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeHHHhCCCCC--CCCCCCC--CCCCCChhHHH
Confidence 99999999983 34567889999999999999999999999 9999999999975432 3677877 56788999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEecCccccCCCC------CchHHHHHHhcCCCceEEecCCCc-ccccccHHHHHHHHHH
Q 010005 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSGEN-MSDFTYVENVAHAHVC 236 (520)
Q Consensus 164 K~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~------~~~~~l~~~~~~g~~~~i~g~g~~-~~~~i~v~Dva~ai~~ 236 (520)
|..+|++++.++.++|++++++||+.+|||++. ..++.++..+..++++.++++|++ .++|+|++|+|++++.
T Consensus 144 K~~~e~~~~~~~~~~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~Dva~~~~~ 223 (310)
T 1eq2_A 144 KFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLW 223 (310)
T ss_dssp HHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcEECcCCCCCCccchHHHHHHHHHHcCCCcEEecCCCcceEccEEHHHHHHHHHH
Confidence 999999999998888999999999999999874 567888888888888778889999 9999999999999999
Q ss_pred HHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCC-CCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHH
Q 010005 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQ-RPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACY 315 (520)
Q Consensus 237 ~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~-~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (520)
+++. +. +++||+++++++++.|+++.+.+.+|.+ ...++.|.+.
T Consensus 224 ~~~~-----~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~---------------------------- 268 (310)
T 1eq2_A 224 FLEN-----GV--SGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKL---------------------------- 268 (310)
T ss_dssp HHHH-----CC--CEEEEESCSCCBCHHHHHHHC----------------------------------------------
T ss_pred HHhc-----CC--CCeEEEeCCCccCHHHHHHHHHHHcCCCCceeCCCChhh----------------------------
Confidence 9982 23 8899999999999999999999999876 2212222100
Q ss_pred HHHHhccceEechHHHHHhcCC-CCCCCHHHHHHHHHHHHHhh
Q 010005 316 IVQLASRTRTFDCIAAQKHIGY-SPVVSLEEGVSSTIQSFSHL 357 (520)
Q Consensus 316 ~~~~~~~~~~~d~~ka~~~LG~-~p~~sleegi~~~~~~~~~~ 357 (520)
.........+|++|+++ ||| .|.++++|+++++++||+++
T Consensus 269 -~~~~~~~~~~~~~~~~~-lG~~~~~~~l~~~l~~~~~~~~~~ 309 (310)
T 1eq2_A 269 -KGRYQAFTQADLTNLRA-AGYDKPFKTVAEGVTEYMAWLNRD 309 (310)
T ss_dssp ----CCCSCCBCCHHHHH-TTCCCCCCCHHHHHHHHHHHTC--
T ss_pred -hcccccccccchHHHHh-cCCCCCCCCHHHHHHHHHHHHHhc
Confidence 00111245679999987 999 78889999999999999764
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-40 Score=337.92 Aligned_cols=323 Identities=16% Similarity=0.111 Sum_probs=246.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCC----cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGK----CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~----~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
+|+||||||+||||++++++|+++|. ++|+++++ ++.... ....+++++.+|++|.+++.++++
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r--------~~~~~~----~~~~~~~~~~~Dl~d~~~~~~~~~ 68 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVAR--------RTRPAW----HEDNPINYVQCDISDPDDSQAKLS 68 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEES--------SCCCSC----CCSSCCEEEECCTTSHHHHHHHHT
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeC--------CCCccc----cccCceEEEEeecCCHHHHHHHHh
Confidence 37899999999999999999999992 38999554 332111 123578999999999999999999
Q ss_pred C---CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEE-------EeecccccccCCCCCCCCCCCcc
Q 010005 84 G---ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC--KVRRLV-------YNSTADVVFDGSHDIHNGDETLT 151 (520)
Q Consensus 84 ~---~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V-------~~SS~~vyg~~~~~~~~~~E~~~ 151 (520)
+ +|+|||+|+... .++...+++|+.++.+++++|++. +++||| |+||.++||.......+.+|++|
T Consensus 69 ~~~~~d~vih~a~~~~--~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~E~~~ 146 (364)
T 2v6g_A 69 PLTDVTHVFYVTWANR--STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLP 146 (364)
T ss_dssp TCTTCCEEEECCCCCC--SSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGGGTTTSCCCCSSBCTTSC
T ss_pred cCCCCCEEEECCCCCc--chHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechhhccccccCCCCCCcccc
Confidence 8 999999999743 468889999999999999999998 899998 89999999865433346788774
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhcCCCC-ceEEEEecCccccCCCCCc----hHH-HHHHh--cCCCceEEecCCC---c
Q 010005 152 CCWKFQDLMCDLKAQAEALVLFANNIDG-LLTCALRPSNVFGPGDTQL----VPL-LVNLA--KPGWTKFIIGSGE---N 220 (520)
Q Consensus 152 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~g-i~~~ilRp~~vyGp~~~~~----~~~-l~~~~--~~g~~~~i~g~g~---~ 220 (520)
.. .+.+.| ..+|+++..+++++| ++++++||+.+|||++... .+. +...+ ..|.++.++++|+ .
T Consensus 147 ~~-~~~~~y----~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~ 221 (364)
T 2v6g_A 147 RL-KYMNFY----YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDG 221 (364)
T ss_dssp CC-SSCCHH----HHHHHHHHHHHTTSTTCEEEEEEESSEECCCTTCSSCHHHHHHHHHHHHHHHTCCBCCCSCHHHHHS
T ss_pred CC-ccchhh----HHHHHHHHHHhhcCCCceEEEECCCceeCCCCCcccchHHHHHHHHHHHHhcCCceecCCCcccccc
Confidence 31 235678 358999999887777 9999999999999987532 333 34444 3677766788874 4
Q ss_pred ccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcc--cCChHHHHHHHH---HH
Q 010005 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFI--KLPTGVVWYIIL---LV 295 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v--~~p~~~~~~~~~---~~ 295 (520)
..+++|++|+|++++.+++ .+...|++||+++++++|++|+++.+.+.+|.+.+.+ .+|.++....+. .+
T Consensus 222 ~~~~~~v~Dva~a~~~~~~-----~~~~~g~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~ 296 (364)
T 2v6g_A 222 YSDCSDADLIAEHHIWAAV-----DPYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDLKLQDLMKGKEPVW 296 (364)
T ss_dssp CBCCEEHHHHHHHHHHHHH-----CGGGTTEEEEECCSCCBCHHHHHHHHHHHHTCCBCCCCTTCCCCHHHHTTTCHHHH
T ss_pred cCCCCcHHHHHHHHHHHHh-----CCCCCCceEEecCCCcCCHHHHHHHHHHHhCCCCCCCCCCCCccHHHHHhhhHHHH
Confidence 5778888999999999998 3445688999999999999999999999999887666 788777666655 33
Q ss_pred HHHHHHhcccccCCCCchHH-----HHHHhccc-eEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhh
Q 010005 296 KWIHEKLGLRTYNHSLSACY-----IVQLASRT-RTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (520)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~ 358 (520)
+.+.+..+. ........ ....+..+ ..+|++|+++ |||+|.++++|+++++++||++..
T Consensus 297 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~e~l~~~~~~~~~~g 361 (364)
T 2v6g_A 297 EEIVRENGL---TPTKLKDVGIWWFGDVILGNECFLDSMNKSKE-HGFLGFRNSKNAFISWIDKAKAYK 361 (364)
T ss_dssp HHHHHHTTC---CCCCHHHHCCHHHHHHHHTSCCCCBCCHHHHH-TTCCCCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCC---CccccccccccchhhhccccchhhcchHHHHh-cCCCCCCCHHHHHHHHHHHHHHcC
Confidence 333333221 11111010 00112345 5889999988 999998999999999999998753
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-40 Score=338.20 Aligned_cols=332 Identities=16% Similarity=0.111 Sum_probs=239.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC-----CCCCcEEEEecCCCHHHHHHHH
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL-----SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~-----~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
||+||||||+||||++++++|+++| ++|+++|+.... . ....+.... ...+++++.+|++|.+++.+++
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKG-YEVHGIKRRASS----F-NTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRIL 74 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECC--------------------------CCEEECCCCSSCHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEECCCcc----c-chHHHHHHhhccccCCCceEEEECCCCCHHHHHHHH
Confidence 4799999999999999999999999 599996543210 0 001111111 1246889999999999999999
Q ss_pred cC--CCEEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCCC---CEEEEeecccccccCCCCCCCCCCCccCCC
Q 010005 83 EG--ASTVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKV---RRLVYNSTADVVFDGSHDIHNGDETLTCCW 154 (520)
Q Consensus 83 ~~--~D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~gv---kr~V~~SS~~vyg~~~~~~~~~~E~~~~~~ 154 (520)
++ +|+|||+|+.. ....++...+++|+.++.+++++|++.++ +||||+||.++||... ..+.+|+. +.
T Consensus 75 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~--~~~~~E~~--~~ 150 (372)
T 1db3_A 75 REVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQ--EIPQKETT--PF 150 (372)
T ss_dssp HHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCC--SSSBCTTS--CC
T ss_pred HhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCC--CCCCCccC--CC
Confidence 85 79999999972 23456778899999999999999999998 8999999999997543 23677877 45
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCC-c----hHHHHHHhcCCC-ceEEecCCCcccccccHH
Q 010005 155 KFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-L----VPLLVNLAKPGW-TKFIIGSGENMSDFTYVE 228 (520)
Q Consensus 155 ~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~-~----~~~l~~~~~~g~-~~~i~g~g~~~~~~i~v~ 228 (520)
.|.+.|+.+|..+|.+++.++.+++++++++|++.+|||+... . +..++..+..|+ +...+++|++.++|+|++
T Consensus 151 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~ 230 (372)
T 1db3_A 151 YPRSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAK 230 (372)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhCCCeEEEEECCccCCCCCCcchhhHHHHHHHHHHcCCCCceeecCCCceeeeeEHH
Confidence 7789999999999999999987789999999999999997642 2 344555666665 345678999999999999
Q ss_pred HHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCccc--CChH-HHHHHHHHHHHHHHHhcc-
Q 010005 229 NVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIK--LPTG-VVWYIILLVKWIHEKLGL- 304 (520)
Q Consensus 229 Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~--~p~~-~~~~~~~~~~~~~~~~~~- 304 (520)
|+|++++.+++ .+ .+++||++++++++++|+++.+.+.+|.+.+... +|.+ ++..+. ..+......+.
T Consensus 231 Dva~a~~~~~~-----~~--~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~ 302 (372)
T 1db3_A 231 DYVKMQWMMLQ-----QE--QPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVT-GHDAPGVKPGDV 302 (372)
T ss_dssp HHHHHHHHTTS-----SS--SCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEEC-SSSCTTCCTTCE
T ss_pred HHHHHHHHHHh-----cC--CCceEEEcCCCceeHHHHHHHHHHHhCCCcccccccccccccccccc-cccccccccccc
Confidence 99999998876 12 2479999999999999999999999987543111 1110 000000 00000000000
Q ss_pred -cccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhcc
Q 010005 305 -RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDS 361 (520)
Q Consensus 305 -~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~~ 361 (520)
.........+. ......+|++|++++|||+|+++++|+++++++||.++....
T Consensus 303 ~~~~~~~~~~~~----~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~~ 356 (372)
T 1db3_A 303 IIAVDPRYFRPA----EVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKH 356 (372)
T ss_dssp EEEECGGGCCCC----C-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHTT
T ss_pred eeeccccccCCC----chhhhccCHHHHHHHhCCccccCHHHHHHHHHHHHHHhhhcc
Confidence 00000000000 012356799999999999999999999999999999887653
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-40 Score=338.19 Aligned_cols=322 Identities=16% Similarity=0.092 Sum_probs=241.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC------CCCCcEEEEecCCCHHHHHHH
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL------SSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~------~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
+|+||||||+||||+++++.|+++| ++|+++++.... . ....+.... ...+++++.+|++|.+++.++
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~----~-~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 97 (375)
T 1t2a_A 24 RNVALITGITGQDGSYLAEFLLEKG-YEVHGIVRRSSS----F-NTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKI 97 (375)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSS----C-CCTTTGGGC---------CEEEEECCTTCHHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHHHHCC-CEEEEEECCccc----c-chhhHHHHhhhhccccCCCceEEEccCCCHHHHHHH
Confidence 4799999999999999999999999 599996654311 0 000111110 234688999999999999999
Q ss_pred HcC--CCEEEEcccCCCC---CcchhhHHhhhHHHHHHHHHHHHHCCC---CEEEEeecccccccCCCCCCCCCCCccCC
Q 010005 82 LEG--ASTVFYVDATDLN---TDDFYNCYMIIVQGAKNVVTACRECKV---RRLVYNSTADVVFDGSHDIHNGDETLTCC 153 (520)
Q Consensus 82 l~~--~D~Vih~aa~~~~---~~~~~~~~~~Nv~gt~~ll~aa~~~gv---kr~V~~SS~~vyg~~~~~~~~~~E~~~~~ 153 (520)
+++ +|+|||+|+.... ..++...+++|+.++.+++++|++.++ +||||+||.++||... ..+.+|++ +
T Consensus 98 ~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~--~~~~~E~~--~ 173 (375)
T 1t2a_A 98 INEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQ--EIPQKETT--P 173 (375)
T ss_dssp HHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCS--SSSBCTTS--C
T ss_pred HHhcCCCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCC--CCCCCccC--C
Confidence 985 6999999997321 356788999999999999999999998 8999999999997543 23678877 4
Q ss_pred CCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC-Cc----hHHHHHHhcCCC-ceEEecCCCcccccccH
Q 010005 154 WKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-QL----VPLLVNLAKPGW-TKFIIGSGENMSDFTYV 227 (520)
Q Consensus 154 ~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~-~~----~~~l~~~~~~g~-~~~i~g~g~~~~~~i~v 227 (520)
..|.+.|+.+|..+|.+++.++.+++++++++||+.+|||+.. .. +..++..+..|. +...+++|++.++|+|+
T Consensus 174 ~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v 253 (375)
T 1t2a_A 174 FYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHA 253 (375)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEEH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEecccccCCCCCCCcchHHHHHHHHHHHcCCCceeEeCCCCceeeeEEH
Confidence 5778999999999999999998777999999999999999764 22 234444555554 44567899999999999
Q ss_pred HHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcc--cCChHHHHHHHHHHHHHHHHhccc
Q 010005 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFI--KLPTGVVWYIILLVKWIHEKLGLR 305 (520)
Q Consensus 228 ~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~ 305 (520)
+|+|++++.+++ .+. +++||+++++++++.|+++.+.+.+|.+.+.. .+|.+++. ...+..
T Consensus 254 ~Dva~a~~~~~~-----~~~--~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~----------~~~~~~ 316 (375)
T 1t2a_A 254 KDYVEAMWLMLQ-----NDE--PEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRC----------KETGKV 316 (375)
T ss_dssp HHHHHHHHHHHH-----SSS--CCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEE----------TTTCCE
T ss_pred HHHHHHHHHHHh-----cCC--CceEEEeCCCcccHHHHHHHHHHHhCCCcccccccccccccc----------cccccc
Confidence 999999999988 222 47999999999999999999999999864311 12322110 000000
Q ss_pred --ccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhc
Q 010005 306 --TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (520)
Q Consensus 306 --~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~ 360 (520)
....+...+. ......+|++|++++|||+|+++++|+++++++||++....
T Consensus 317 ~~~~~~~~~~~~----~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 369 (375)
T 1t2a_A 317 HVTVDLKYYRPT----EVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMRT 369 (375)
T ss_dssp EEEECGGGSCSS----CCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred eeecCcccCCcc----cchhhcCCHHHHHHhcCCCccCCHHHHHHHHHHHHHHhhcc
Confidence 0000000000 01235679999999999999999999999999999987654
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-40 Score=331.47 Aligned_cols=290 Identities=17% Similarity=0.160 Sum_probs=232.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
..++|+||||||+||||++++++|+++| ++|+++++. .... .....+ .+++++.+|++|.+++.++++
T Consensus 17 ~~~~~~vlVTGasG~iG~~l~~~L~~~g-~~V~~~~r~--------~~~~~~~~~~l--~~v~~~~~Dl~d~~~~~~~~~ 85 (330)
T 2pzm_A 17 RGSHMRILITGGAGCLGSNLIEHWLPQG-HEILVIDNF--------ATGKREVLPPV--AGLSVIEGSVTDAGLLERAFD 85 (330)
T ss_dssp TTTCCEEEEETTTSHHHHHHHHHHGGGT-CEEEEEECC--------SSSCGGGSCSC--TTEEEEECCTTCHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECC--------Cccchhhhhcc--CCceEEEeeCCCHHHHHHHHh
Confidence 4557899999999999999999999999 599995543 2110 000111 478899999999999999999
Q ss_pred --CCCEEEEcccCCC--CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCCh
Q 010005 84 --GASTVFYVDATDL--NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDL 159 (520)
Q Consensus 84 --~~D~Vih~aa~~~--~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~ 159 (520)
++|+|||+||... +..++. +++|+.++.+++++|++.+++||||+||.++||.......+.+|++ .|.+.
T Consensus 86 ~~~~D~vih~A~~~~~~~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~E~~----~~~~~ 159 (330)
T 2pzm_A 86 SFKPTHVVHSAAAYKDPDDWAED--AATNVQGSINVAKAASKAGVKRLLNFQTALCYGRPATVPIPIDSPT----APFTS 159 (330)
T ss_dssp HHCCSEEEECCCCCSCTTCHHHH--HHHHTHHHHHHHHHHHHHTCSEEEEEEEGGGGCSCSSSSBCTTCCC----CCCSH
T ss_pred hcCCCEEEECCccCCCccccChh--HHHHHHHHHHHHHHHHHcCCCEEEEecCHHHhCCCccCCCCcCCCC----CCCCh
Confidence 9999999999733 223444 8999999999999999999999999999999975432112566664 57789
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC-CchHHHHHHhcCCCceEEecCCCcccccccHHHHHH-HHHHH
Q 010005 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAH-AHVCA 237 (520)
Q Consensus 160 Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~-~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~-ai~~~ 237 (520)
|+.+|+.+|++++.+ +++++++||+++|||+.. .+++.++..+..+. .+++++. .++|+|++|+|+ +++.+
T Consensus 160 Y~~sK~~~e~~~~~~----~~~~~~iR~~~v~gp~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~i~~~Dva~~a~~~~ 232 (330)
T 2pzm_A 160 YGISKTAGEAFLMMS----DVPVVSLRLANVTGPRLAIGPIPTFYKRLKAGQ--KCFCSDT-VRDFLDMSDFLAIADLSL 232 (330)
T ss_dssp HHHHHHHHHHHHHTC----SSCEEEEEECEEECTTCCSSHHHHHHHHHHTTC--CCCEESC-EECEEEHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc----CCCEEEEeeeeeECcCCCCCHHHHHHHHHHcCC--EEeCCCC-EecceeHHHHHHHHHHHH
Confidence 999999999999886 789999999999999873 56677777776666 4556777 899999999999 99988
Q ss_pred HHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHH
Q 010005 238 AEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIV 317 (520)
Q Consensus 238 ~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (520)
++ .+ . +++||++++++++++|+++.+.+.+|.+ +....|.+ +
T Consensus 233 ~~-----~~-~-g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~-----------------------~------- 274 (330)
T 2pzm_A 233 QE-----GR-P-TGVFNVSTGEGHSIKEVFDVVLDYVGAT-LAEPVPVV-----------------------A------- 274 (330)
T ss_dssp ST-----TC-C-CEEEEESCSCCEEHHHHHHHHHHHHTCC-CSSCCCEE-----------------------C-------
T ss_pred hh-----cC-C-CCEEEeCCCCCCCHHHHHHHHHHHhCCC-CceeCCCC-----------------------c-------
Confidence 77 22 2 8899999999999999999999999987 43333311 0
Q ss_pred HHhccceEechHHH-----HHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 318 QLASRTRTFDCIAA-----QKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 318 ~~~~~~~~~d~~ka-----~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
......+|++|+ ++ |||+|+++++|+++++++||++...
T Consensus 275 --~~~~~~~d~~k~~~~~l~~-lG~~p~~~~~~~l~~~~~~~~~~~~ 318 (330)
T 2pzm_A 275 --PGADDVPSVVLDPSKTETE-FGWKAKVDFKDTITGQLAWYDKYGV 318 (330)
T ss_dssp --CCTTSCSEECBCCHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHCS
T ss_pred --chhhccCCHHHHhhchHHH-cCCcccCCHHHHHHHHHHHHHhhCc
Confidence 012456788888 77 9999999999999999999987643
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-40 Score=333.84 Aligned_cols=320 Identities=15% Similarity=0.123 Sum_probs=241.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC---CCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS---LLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~---~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
++|+||||||+||||++++++|+++| ++|+++|+ ++... .+.......+++++.+|++|.+++.++++
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 72 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKG-YEVYGADR--------RSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIE 72 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECS--------CCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEEC--------CCcccccccHhhccccCceeEEECCCCCHHHHHHHHH
Confidence 45899999999999999999999999 59999554 33211 11111122468899999999999999998
Q ss_pred C--CCEEEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHCCC-CEEEEeecccccccCCCCCCCCCCCccCCCCCC
Q 010005 84 G--ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKV-RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQ 157 (520)
Q Consensus 84 ~--~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~gv-kr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~ 157 (520)
+ +|+|||+||... +..++...+++|+.|+.+++++|++.++ +||||+||.++||.... .+.+|+. +..|.
T Consensus 73 ~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~--~~~~e~~--~~~~~ 148 (345)
T 2z1m_A 73 KVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQE--IPQTEKT--PFYPR 148 (345)
T ss_dssp HHCCSEEEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCSS--SSBCTTS--CCCCC
T ss_pred hcCCCEEEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCC--CCCCccC--CCCCC
Confidence 5 699999999732 2457888999999999999999999887 89999999999975432 3567776 55788
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC--Cc---hHHHHHHhcCCC-ceEEecCCCcccccccHHHHH
Q 010005 158 DLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QL---VPLLVNLAKPGW-TKFIIGSGENMSDFTYVENVA 231 (520)
Q Consensus 158 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~--~~---~~~l~~~~~~g~-~~~i~g~g~~~~~~i~v~Dva 231 (520)
+.|+.+|..+|.+++.++.+++++++++|++++|||+.. .. ++.++..+..|+ ....++++++.++|+|++|+|
T Consensus 149 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva 228 (345)
T 2z1m_A 149 SPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYV 228 (345)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEECCEEHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHhCCceEeeeeeeecCCCCCCcchhHHHHHHHHHHHcCCCCeeeeCCCCceeeeEEHHHHH
Confidence 999999999999999998777999999999999999864 22 233344445554 334678889999999999999
Q ss_pred HHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcc--cCChHHHHHHHHHHHHHHHHhccc--cc
Q 010005 232 HAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFI--KLPTGVVWYIILLVKWIHEKLGLR--TY 307 (520)
Q Consensus 232 ~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~--~~ 307 (520)
++++.+++ .+ .+++||++++++++++|+++.+.+.+|.+.+.. .+|.+.+. ...+.. ..
T Consensus 229 ~a~~~~~~-----~~--~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~----------~~~~~~~~~~ 291 (345)
T 2z1m_A 229 EAMWLMMQ-----QP--EPDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGID----------RNTGKVIVEV 291 (345)
T ss_dssp HHHHHHHT-----SS--SCCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEE----------TTTCCEEEEE
T ss_pred HHHHHHHh-----CC--CCceEEEeCCCCccHHHHHHHHHHHhCCCcccccccccccccc----------cccccccccc
Confidence 99999887 12 247999999999999999999999999874321 12221100 000000 00
Q ss_pred CCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhc
Q 010005 308 NHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (520)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~ 360 (520)
..+...+. ......+|++|++++|||+|+++++|+++++++||.++...
T Consensus 292 ~~~~~~~~----~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~~ 340 (345)
T 2z1m_A 292 SEEFFRPA----EVDILVGNPEKAMKKLGWKPRTTFDELVEIMMEADLKRVRD 340 (345)
T ss_dssp CGGGSCSS----CCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHC
T ss_pred CcccCCCC----CcceeecCHHHHHHHcCCcccCCHHHHHHHHHHHHHHHhcc
Confidence 00000000 01235679999999999999999999999999999987654
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-41 Score=332.72 Aligned_cols=290 Identities=13% Similarity=0.059 Sum_probs=231.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC--CC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--AS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~--~D 86 (520)
|+||||||+||||++++++|+ +| ++|++ +.|++. .+.+|+.|.+++.+++++ +|
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g-~~V~~--------~~r~~~--------------~~~~D~~d~~~~~~~~~~~~~d 56 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PV-GNLIA--------LDVHSK--------------EFCGDFSNPKGVAETVRKLRPD 56 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TT-SEEEE--------ECTTCS--------------SSCCCTTCHHHHHHHHHHHCCS
T ss_pred CeEEEECCCCHHHHHHHHHhh-cC-CeEEE--------eccccc--------------cccccCCCHHHHHHHHHhcCCC
Confidence 589999999999999999999 89 69999 445431 346899999999999986 99
Q ss_pred EEEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHH
Q 010005 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (520)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~s 163 (520)
+|||+|+... +..++...+++|+.++.+++++|++.++ ||||+||.++||... ..+.+|++ +..|.+.|+.+
T Consensus 57 ~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~vy~~~~--~~~~~E~~--~~~p~~~Y~~s 131 (299)
T 1n2s_A 57 VIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGA-WVVHYSTDYVFPGTG--DIPWQETD--ATSPLNVYGKT 131 (299)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC-EEEEEEEGGGSCCCT--TCCBCTTS--CCCCSSHHHHH
T ss_pred EEEECcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEecccEEeCCC--CCCCCCCC--CCCCccHHHHH
Confidence 9999999732 3467888999999999999999999998 899999999997543 24678877 56788999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhc
Q 010005 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (520)
Q Consensus 164 K~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~ 243 (520)
|..+|++++.++. +++++||+.+|||++..+++.+...+..+.++.+.+ ++.++|+|++|+|++++.+++...
T Consensus 132 K~~~E~~~~~~~~----~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~Dva~~~~~~~~~~~- 204 (299)
T 1n2s_A 132 KLAGEKALQDNCP----KHLIFRTSWVYAGKGNNFAKTMLRLAKERQTLSVIN--DQYGAPTGAELLADCTAHAIRVAL- 204 (299)
T ss_dssp HHHHHHHHHHHCS----SEEEEEECSEECSSSCCHHHHHHHHHHHCSEEEEEC--SCEECCEEHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCC----CeEEEeeeeecCCCcCcHHHHHHHHHhcCCCEEeec--CcccCCeeHHHHHHHHHHHHHHhc-
Confidence 9999999999754 799999999999988778888888888888766665 478999999999999999998311
Q ss_pred ccccC-CCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhcc
Q 010005 244 RMVSV-AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASR 322 (520)
Q Consensus 244 ~~~~~-~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (520)
... .+++||+++++++|++|+++.+.+.+|.+.+.+++|... .........+.. ...
T Consensus 205 --~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~-------------~~~~~~~~~~~~-------~~~ 262 (299)
T 1n2s_A 205 --NKPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELN-------------AVPTSAYPTPAS-------RPG 262 (299)
T ss_dssp --HCGGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEE-------------EECSTTSCCSSC-------CCS
T ss_pred --cccccCceEEEeCCCCCCHHHHHHHHHHHhCCCcccccccccc-------------ccccccccCcCC-------CCC
Confidence 012 478999999999999999999999998764322211000 000000000000 013
Q ss_pred ceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhh
Q 010005 323 TRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (520)
Q Consensus 323 ~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~ 357 (520)
...+|++|++++|||+|+ +++|+++++++||+++
T Consensus 263 ~~~~d~~k~~~~lG~~p~-~~~~~l~~~~~~~~~~ 296 (299)
T 1n2s_A 263 NSRLNTEKFQRNFDLILP-QWELGVKRMLTEMFTT 296 (299)
T ss_dssp BCCBCCHHHHHHHTCCCC-BHHHHHHHHHHHHHSC
T ss_pred ceeeeHHHHHHhcCCCCC-CHHHHHHHHHHHHHhc
Confidence 567899999999999998 9999999999999864
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-40 Score=339.08 Aligned_cols=307 Identities=16% Similarity=0.155 Sum_probs=238.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCC-----CC-CcEEEEecCCCHHHHHHH
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS-----SG-RAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~-----~~-~v~~~~~Dl~d~~~l~~~ 81 (520)
+|+||||||+||||+++++.|+++| ++|+++++.... . ....+..... .+ +++++.+|++|.+++.++
T Consensus 28 ~k~vlVtGatG~IG~~l~~~L~~~g-~~V~~~~r~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 101 (381)
T 1n7h_A 28 RKIALITGITGQDGSYLTEFLLGKG-YEVHGLIRRSSN----F-NTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRW 101 (381)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSS----C-CCTTTTTTC--------CCEEEEECCTTCHHHHHHH
T ss_pred CCeEEEEcCCchHHHHHHHHHHHCC-CEEEEEecCCcc----c-cchhhhhhhhccccccccceEEEECCCCCHHHHHHH
Confidence 3699999999999999999999999 599996654311 0 0001111111 12 688999999999999999
Q ss_pred HcC--CCEEEEcccCCCC---CcchhhHHhhhHHHHHHHHHHHHHCCCC-----EEEEeecccccccCCCCCCCCCCCcc
Q 010005 82 LEG--ASTVFYVDATDLN---TDDFYNCYMIIVQGAKNVVTACRECKVR-----RLVYNSTADVVFDGSHDIHNGDETLT 151 (520)
Q Consensus 82 l~~--~D~Vih~aa~~~~---~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-----r~V~~SS~~vyg~~~~~~~~~~E~~~ 151 (520)
+++ +|+|||+|+.... ..++...+++|+.++.+++++|++.+++ ||||+||.++||.... +.+|++
T Consensus 102 ~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~---~~~E~~- 177 (381)
T 1n7h_A 102 IDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPP---PQSETT- 177 (381)
T ss_dssp HHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCS---SBCTTS-
T ss_pred HHhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCC---CCCCCC-
Confidence 986 6999999997321 3567889999999999999999998876 9999999999976443 678877
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCC-c----hHHHHHHhcCCC-ceEEecCCCcccccc
Q 010005 152 CCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-L----VPLLVNLAKPGW-TKFIIGSGENMSDFT 225 (520)
Q Consensus 152 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~-~----~~~l~~~~~~g~-~~~i~g~g~~~~~~i 225 (520)
+..|.+.|+.+|..+|.+++.++.+++++++++|++++|||+... . +..++..+..|. ....+++|++.++|+
T Consensus 178 -~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v 256 (381)
T 1n7h_A 178 -PFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWG 256 (381)
T ss_dssp -CCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECE
T ss_pred -CCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCCcchhHHHHHHHHHHHcCCCCeEEeCCCCceeeeE
Confidence 557889999999999999999987779999999999999998642 2 334444445554 334678899999999
Q ss_pred cHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCC-cccCChHHHHHHHHHHHHHHHHhcc
Q 010005 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP-FIKLPTGVVWYIILLVKWIHEKLGL 304 (520)
Q Consensus 226 ~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~-~v~~p~~~~~~~~~~~~~~~~~~~~ 304 (520)
|++|+|++++.+++ .+ .+++||++++++++++|+++.+.+.+|.+.+ .+.++..
T Consensus 257 ~v~Dva~a~~~~~~-----~~--~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~------------------ 311 (381)
T 1n7h_A 257 FAGDYVEAMWLMLQ-----QE--KPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQR------------------ 311 (381)
T ss_dssp EHHHHHHHHHHHHT-----SS--SCCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGG------------------
T ss_pred EHHHHHHHHHHHHh-----CC--CCCeEEeeCCCCCcHHHHHHHHHHHcCCCcccccccCcc------------------
Confidence 99999999999987 22 2479999999999999999999999997532 1111100
Q ss_pred cccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhc
Q 010005 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (520)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~ 360 (520)
. ..+ . ......+|++|++++|||+|+++++|+++++++||.++...
T Consensus 312 -~-~~~----~----~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 357 (381)
T 1n7h_A 312 -Y-FRP----A----EVDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELAKR 357 (381)
T ss_dssp -G-SCS----S----CCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred -c-CCc----c----ccccccCCHHHHHHhcCCcccCCHHHHHHHHHHHHHhhccc
Confidence 0 000 0 01235679999999999999889999999999999987654
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=330.70 Aligned_cols=292 Identities=17% Similarity=0.165 Sum_probs=230.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG- 84 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~- 84 (520)
.++|+||||||+||||++++++|+++| ++|+++|+... .....+.. ..+++++.+|++|.+++.+++++
T Consensus 19 ~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~------~~~~~l~~---~~~~~~~~~Dl~d~~~~~~~~~~~ 88 (333)
T 2q1w_A 19 SHMKKVFITGICGQIGSHIAELLLERG-DKVVGIDNFAT------GRREHLKD---HPNLTFVEGSIADHALVNQLIGDL 88 (333)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSS------CCGGGSCC---CTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEECCCc------cchhhHhh---cCCceEEEEeCCCHHHHHHHHhcc
Confidence 457899999999999999999999999 59999654321 00001111 14788999999999999999988
Q ss_pred -CCEEEEcccCCC--CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccC--CCCCCCCCCCccCCCCCC-C
Q 010005 85 -ASTVFYVDATDL--NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDG--SHDIHNGDETLTCCWKFQ-D 158 (520)
Q Consensus 85 -~D~Vih~aa~~~--~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~--~~~~~~~~E~~~~~~~p~-~ 158 (520)
+|+|||+|+... +..++. +++|+.++.+++++|++.+++||||+||.++||.. .... +.+|+. .|. +
T Consensus 89 ~~D~vih~A~~~~~~~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~g~~~~~~~~-~~~E~~----~p~~~ 161 (333)
T 2q1w_A 89 QPDAVVHTAASYKDPDDWYND--TLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQPV-RLDHPR----NPANS 161 (333)
T ss_dssp CCSEEEECCCCCSCTTCHHHH--HHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGCSCCCSSSB-CTTSCC----CCTTC
T ss_pred CCcEEEECceecCCCccCChH--HHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCcccCCC-CcCCCC----CCCCC
Confidence 999999999732 223443 89999999999999999999999999999999721 1112 667764 566 8
Q ss_pred hHHHHHHHHHHHHHH-hcCCCCceEEEEecCccccCCCC-CchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHH
Q 010005 159 LMCDLKAQAEALVLF-ANNIDGLLTCALRPSNVFGPGDT-QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236 (520)
Q Consensus 159 ~Y~~sK~~~E~~~~~-~~~~~gi~~~ilRp~~vyGp~~~-~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ 236 (520)
.|+.+|..+|++++. ++ +++++||+++|||+.. .+++.++..+..+. .+++ +++.++|+|++|+|++++.
T Consensus 162 ~Y~~sK~~~E~~~~~s~~-----~~~ilR~~~v~gp~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~i~v~Dva~ai~~ 233 (333)
T 2q1w_A 162 SYAISKSANEDYLEYSGL-----DFVTFRLANVVGPRNVSGPLPIFFQRLSEGK--KCFV-TKARRDFVFVKDLARATVR 233 (333)
T ss_dssp HHHHHHHHHHHHHHHHTC-----CEEEEEESEEESTTCCSSHHHHHHHHHHTTC--CCEE-EECEECEEEHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhhC-----CeEEEeeceEECcCCcCcHHHHHHHHHHcCC--eeeC-CCceEeeEEHHHHHHHHHH
Confidence 999999999999998 75 7899999999999853 56777777777776 3455 6788999999999999999
Q ss_pred HHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHH
Q 010005 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYI 316 (520)
Q Consensus 237 ~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (520)
+++ .+. +++||+++++++++.|+++.+.+.+|.+ +...+|.+. ..
T Consensus 234 ~~~-----~~~--g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~--------------------~~------- 278 (333)
T 2q1w_A 234 AVD-----GVG--HGAYHFSSGTDVAIKELYDAVVEAMALP-SYPEPEIRE--------------------LG------- 278 (333)
T ss_dssp HHT-----TCC--CEEEECSCSCCEEHHHHHHHHHHHTTCS-SCCCCEEEE--------------------CC-------
T ss_pred HHh-----cCC--CCEEEeCCCCCccHHHHHHHHHHHhCCC-CceeCCCCC--------------------cc-------
Confidence 887 222 8899999999999999999999999987 333333110 00
Q ss_pred HHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhh
Q 010005 317 VQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (520)
Q Consensus 317 ~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~ 358 (520)
...+.....+|++|+++. ||+|+++++|+++++++||++..
T Consensus 279 ~~~~~~~~~~d~~k~~~~-G~~p~~~~~~~l~~~~~~~~~~~ 319 (333)
T 2q1w_A 279 PDDAPSILLDPSRTIQDF-GKIEFTPLKETVAAAVAYFREYG 319 (333)
T ss_dssp TTSCCCCCBCCHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHC
T ss_pred cccccccccCCHHHHHhc-CCCcCCCHHHHHHHHHHHHHHHC
Confidence 001123567899999998 99999999999999999998764
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=327.33 Aligned_cols=297 Identities=18% Similarity=0.141 Sum_probs=230.5
Q ss_pred eEEEEcCCChhHHHHHHHHHhc--CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--CC
Q 010005 10 TCVVLNGRGFVGRSLVLRLLEL--GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GA 85 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~--g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~~ 85 (520)
+||||||+||||++++++|+++ | ++|+++|+ +.... .+++++.+|++|.+++.++++ ++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r--------~~~~~--------~~~~~~~~D~~d~~~~~~~~~~~~~ 63 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGK-KNVIASDI--------VQRDT--------GGIKFITLDVSNRDEIDRAVEKYSI 63 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCG-GGEEEEES--------SCCCC--------TTCCEEECCTTCHHHHHHHHHHTTC
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCC-CEEEEecC--------CCccc--------cCceEEEecCCCHHHHHHHHhhcCC
Confidence 5999999999999999999998 7 58999554 22211 146789999999999999998 89
Q ss_pred CEEEEcccCCC--CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHH
Q 010005 86 STVFYVDATDL--NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (520)
Q Consensus 86 D~Vih~aa~~~--~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~s 163 (520)
|+|||+|+... ...++...+++|+.++.+++++|++.+++||||+||.++|+.... ..+.+|+. +..|.+.|+.+
T Consensus 64 d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~-~~~~~e~~--~~~p~~~Y~~s 140 (317)
T 3ajr_A 64 DAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVFGPETP-KNKVPSIT--ITRPRTMFGVT 140 (317)
T ss_dssp CEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCTTSC-SSSBCSSS--CCCCCSHHHHH
T ss_pred cEEEECCcccCCccccChHHHhhhhhHHHHHHHHHHHHcCCCEEEEecCHHHhCCCCC-CCCccccc--cCCCCchHHHH
Confidence 99999999732 234678899999999999999999999999999999999975422 22456665 56789999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEecCccccCCCC------C-chHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHH
Q 010005 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------Q-LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236 (520)
Q Consensus 164 K~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~------~-~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ 236 (520)
|..+|++++.++.++|++++++||+.+||++.. . ..+.+.+.+..+. ...++++++.++|+|++|+|++++.
T Consensus 141 K~~~e~~~~~~~~~~~~~~~~lR~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~v~Dva~a~~~ 219 (317)
T 3ajr_A 141 KIAAELLGQYYYEKFGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREK-YKCYLAPNRALPMMYMPDALKALVD 219 (317)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECEEECSSSCCCSCSSTHHHHHHHHHHTTCC-EEECSCTTCCEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecCcEeccCCCCCCcchhHHHHHHHHHHhCCC-ceeecCccceeeeeEHHHHHHHHHH
Confidence 999999999887778999999999999997532 1 3344444454444 4677888899999999999999999
Q ss_pred HHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHH
Q 010005 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYI 316 (520)
Q Consensus 237 ~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (520)
+++.... ....+++||+++ ++++++|+++.+.+.+|.. +....|. ....
T Consensus 220 ~l~~~~~--~~~~g~~~~i~~-~~~s~~e~~~~i~~~~~~~-~i~~~~~---------------------------~~~~ 268 (317)
T 3ajr_A 220 LYEADRD--KLVLRNGYNVTA-YTFTPSELYSKIKERIPEF-EIEYKED---------------------------FRDK 268 (317)
T ss_dssp HHHCCGG--GCSSCSCEECCS-EEECHHHHHHHHHTTCCSC-CEEECCC---------------------------HHHH
T ss_pred HHhCCcc--ccccCceEecCC-ccccHHHHHHHHHHHCCcc-ccccccc---------------------------cchh
Confidence 9882110 011358999997 6799999999999998732 1111121 0000
Q ss_pred HHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 317 VQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 317 ~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
.. ......+|++|++++|||+|+++++|+++++++||++...
T Consensus 269 ~~-~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~ 310 (317)
T 3ajr_A 269 IA-ATWPESLDSSEASNEWGFSIEYDLDRTIDDMIDHISEKLG 310 (317)
T ss_dssp HH-TTSCSCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHTT
T ss_pred hc-cccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhc
Confidence 00 0113467999999999999999999999999999988654
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=323.66 Aligned_cols=276 Identities=16% Similarity=0.132 Sum_probs=228.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--CC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GA 85 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~~ 85 (520)
.|+||||||+||||++++++|+++| ++|++ +.|+ .+|++|.+++.++++ ++
T Consensus 12 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~--------~~r~------------------~~Dl~d~~~~~~~~~~~~~ 64 (292)
T 1vl0_A 12 HMKILITGANGQLGREIQKQLKGKN-VEVIP--------TDVQ------------------DLDITNVLAVNKFFNEKKP 64 (292)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSS-EEEEE--------ECTT------------------TCCTTCHHHHHHHHHHHCC
T ss_pred cceEEEECCCChHHHHHHHHHHhCC-CeEEe--------ccCc------------------cCCCCCHHHHHHHHHhcCC
Confidence 5899999999999999999999999 69999 4443 279999999999998 89
Q ss_pred CEEEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHH
Q 010005 86 STVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (520)
Q Consensus 86 D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~ 162 (520)
|+|||+|+... +..++...+++|+.++.+++++|++.++ ||||+||.++|+... ..+.+|++ +..|.+.|+.
T Consensus 65 d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~-~iv~~SS~~v~~~~~--~~~~~E~~--~~~~~~~Y~~ 139 (292)
T 1vl0_A 65 NVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA-EIVQISTDYVFDGEA--KEPITEFD--EVNPQSAYGK 139 (292)
T ss_dssp SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCSCC--SSCBCTTS--CCCCCSHHHH
T ss_pred CEEEECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEechHHeECCCC--CCCCCCCC--CCCCccHHHH
Confidence 99999999732 2356788999999999999999999998 999999999997543 23678877 5578899999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhh
Q 010005 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242 (520)
Q Consensus 163 sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~ 242 (520)
+|..+|++++.++. +++++||+.+||| ...+++.+...+..+.++.+.+ ++.++|+|++|+|++++.+++.
T Consensus 140 sK~~~E~~~~~~~~----~~~~lR~~~v~G~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~Dva~~~~~~~~~-- 210 (292)
T 1vl0_A 140 TKLEGENFVKALNP----KYYIVRTAWLYGD-GNNFVKTMINLGKTHDELKVVH--DQVGTPTSTVDLARVVLKVIDE-- 210 (292)
T ss_dssp HHHHHHHHHHHHCS----SEEEEEECSEESS-SSCHHHHHHHHHHHCSEEEEES--SCEECCEEHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhCC----CeEEEeeeeeeCC-CcChHHHHHHHHhcCCcEEeec--CeeeCCccHHHHHHHHHHHHhc--
Confidence 99999999999754 5899999999999 5567777777777787766665 4789999999999999999982
Q ss_pred cccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhcc
Q 010005 243 SRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASR 322 (520)
Q Consensus 243 ~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (520)
. .+++||+++++++++.|+++.+.+.+|.+.+...+|.+.. . .+... ..
T Consensus 211 ----~-~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~--------------~-----~~~~~-------~~ 259 (292)
T 1vl0_A 211 ----K-NYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEF--------------P-----RPAKR-------PK 259 (292)
T ss_dssp ----T-CCEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTS--------------C-----CSSCC-------CS
T ss_pred ----C-CCcEEEecCCCCccHHHHHHHHHHHhCCCCceeecccccc--------------C-----cccCC-------Cc
Confidence 2 6889999999999999999999999998755444442210 0 00000 12
Q ss_pred ceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Q 010005 323 TRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSH 356 (520)
Q Consensus 323 ~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~ 356 (520)
...+|++|+++.|||+|+ +++|+++++++||++
T Consensus 260 ~~~~d~~k~~~~lG~~p~-~~~~~l~~~~~~~~~ 292 (292)
T 1vl0_A 260 YSVLRNYMLELTTGDITR-EWKESLKEYIDLLQM 292 (292)
T ss_dssp BCCBCCHHHHHTTCCCCC-BHHHHHHHHHHHHTC
T ss_pred cccccHHHHHHHcCCCCC-CHHHHHHHHHHHhcC
Confidence 467899999999999998 999999999999863
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=322.30 Aligned_cols=277 Identities=17% Similarity=0.136 Sum_probs=217.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
|+|+|||||| ||||++++++|+++| ++|+++ .|++.+. ..+...+++++.+|+.|.+ ++++|
T Consensus 4 m~~~ilVtGa-G~iG~~l~~~L~~~g-~~V~~~--------~r~~~~~---~~~~~~~~~~~~~D~~d~~-----~~~~d 65 (286)
T 3ius_A 4 MTGTLLSFGH-GYTARVLSRALAPQG-WRIIGT--------SRNPDQM---EAIRASGAEPLLWPGEEPS-----LDGVT 65 (286)
T ss_dssp -CCEEEEETC-CHHHHHHHHHHGGGT-CEEEEE--------ESCGGGH---HHHHHTTEEEEESSSSCCC-----CTTCC
T ss_pred CcCcEEEECC-cHHHHHHHHHHHHCC-CEEEEE--------EcChhhh---hhHhhCCCeEEEecccccc-----cCCCC
Confidence 5689999998 999999999999999 599994 4443311 1112247899999999954 78999
Q ss_pred EEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHH--CCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHH
Q 010005 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRE--CKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (520)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~--~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK 164 (520)
+|||+|+..... + ..+.+++++|++ .+++||||+||.++||... ..+.+|++ +..|.+.|+.+|
T Consensus 66 ~vi~~a~~~~~~-~---------~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~--~~~~~E~~--~~~p~~~Y~~sK 131 (286)
T 3ius_A 66 HLLISTAPDSGG-D---------PVLAALGDQIAARAAQFRWVGYLSTTAVYGDHD--GAWVDETT--PLTPTAARGRWR 131 (286)
T ss_dssp EEEECCCCBTTB-C---------HHHHHHHHHHHHTGGGCSEEEEEEEGGGGCCCT--TCEECTTS--CCCCCSHHHHHH
T ss_pred EEEECCCccccc-c---------HHHHHHHHHHHhhcCCceEEEEeecceecCCCC--CCCcCCCC--CCCCCCHHHHHH
Confidence 999999973321 1 235789999999 6899999999999997543 33678887 568889999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcc
Q 010005 165 AQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSR 244 (520)
Q Consensus 165 ~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~ 244 (520)
..+|++++.+ .|++++++||+.+|||++..+ ..+..|....+.++ ++.++|+|++|+|++++.+++
T Consensus 132 ~~~E~~~~~~---~~~~~~ilRp~~v~G~~~~~~-----~~~~~~~~~~~~~~-~~~~~~i~v~Dva~a~~~~~~----- 197 (286)
T 3ius_A 132 VMAEQQWQAV---PNLPLHVFRLAGIYGPGRGPF-----SKLGKGGIRRIIKP-GQVFSRIHVEDIAQVLAASMA----- 197 (286)
T ss_dssp HHHHHHHHHS---TTCCEEEEEECEEEBTTBSSS-----TTSSSSCCCEEECT-TCCBCEEEHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHhh---cCCCEEEEeccceECCCchHH-----HHHhcCCccccCCC-CcccceEEHHHHHHHHHHHHh-----
Confidence 9999999997 689999999999999986542 34556776666665 578999999999999999998
Q ss_pred cccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccce
Q 010005 245 MVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTR 324 (520)
Q Consensus 245 ~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (520)
....|++||++++++++++|+++.+.+.+|.+.+. .+|.. .....+....++....
T Consensus 198 -~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~-~~~~~----------------------~~~~~~~~~~~~~~~~ 253 (286)
T 3ius_A 198 -RPDPGAVYNVCDDEPVPPQDVIAYAAELQGLPLPP-AVDFD----------------------KADLTPMARSFYSENK 253 (286)
T ss_dssp -SCCTTCEEEECCSCCBCHHHHHHHHHHHHTCCCCC-EEEGG----------------------GSCCCHHHHHTTSCCC
T ss_pred -CCCCCCEEEEeCCCCccHHHHHHHHHHHcCCCCCc-ccchh----------------------hhccChhHHHhhcCCc
Confidence 33367899999999999999999999999987543 22211 0111222233344578
Q ss_pred EechHHHHHhcCCCCCC-CHHHHHHHHHHH
Q 010005 325 TFDCIAAQKHIGYSPVV-SLEEGVSSTIQS 353 (520)
Q Consensus 325 ~~d~~ka~~~LG~~p~~-sleegi~~~~~~ 353 (520)
.+|++|+++.|||+|++ +++|+++++++.
T Consensus 254 ~~d~~k~~~~lG~~p~~p~~~e~l~~~~~~ 283 (286)
T 3ius_A 254 RVRNDRIKEELGVRLKYPNYRVGLEALQAD 283 (286)
T ss_dssp EECCHHHHHTTCCCCSCSSHHHHHHHHHHT
T ss_pred eeehHHHHHHhCCCCCcCCHHHHHHHHHHh
Confidence 89999999999999999 799999998863
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-39 Score=323.84 Aligned_cols=288 Identities=14% Similarity=0.127 Sum_probs=207.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC--C
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--A 85 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~--~ 85 (520)
+|+||||||+||||++++++|+++| ++|+++ .|+... ++ ++.+|++|.+++.+++++ +
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~--------~r~~~~---------~~--~~~~Dl~d~~~~~~~~~~~~~ 61 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNN-WHAVGC--------GFRRAR---------PK--FEQVNLLDSNAVHHIIHDFQP 61 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTT-CEEEEE--------C-----------------------------CHHHHHHHCC
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC-CeEEEE--------ccCCCC---------CC--eEEecCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999999 599994 444321 12 788999999999999985 9
Q ss_pred CEEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHH
Q 010005 86 STVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (520)
Q Consensus 86 D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~ 162 (520)
|+|||+|+.. .+..++...+++|+.++.+++++|++.++ |+||+||.++|+.. ..+.+|++ +..|.+.|+.
T Consensus 62 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~~~~---~~~~~E~~--~~~~~~~Y~~ 135 (315)
T 2ydy_A 62 HVIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGA-FLIYISSDYVFDGT---NPPYREED--IPAPLNLYGK 135 (315)
T ss_dssp SEEEECC-------------------CHHHHHHHHHHHHHTC-EEEEEEEGGGSCSS---SCSBCTTS--CCCCCSHHHH
T ss_pred CEEEECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEchHHHcCCC---CCCCCCCC--CCCCcCHHHH
Confidence 9999999972 23467888999999999999999999987 99999999999752 34678877 5577899999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEecCccccCCCC---CchHHHHHHhc-CCCceEEecCCCcccccccHHHHHHHHHHHH
Q 010005 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT---QLVPLLVNLAK-PGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238 (520)
Q Consensus 163 sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~---~~~~~l~~~~~-~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~ 238 (520)
+|..+|++++.+ +++++++||+.+|||++. .+++.+...+. .+.++.+. +++.++|+|++|+|++++.++
T Consensus 136 sK~~~e~~~~~~----~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~v~Dva~a~~~~~ 209 (315)
T 2ydy_A 136 TKLDGEKAVLEN----NLGAAVLRIPILYGEVEKLEESAVTVMFDKVQFSNKSANMD--HWQQRFPTHVKDVATVCRQLA 209 (315)
T ss_dssp HHHHHHHHHHHH----CTTCEEEEECSEECSCSSGGGSTTGGGHHHHHCCSSCEEEE--CSSBBCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----CCCeEEEeeeeeeCCCCcccccHHHHHHHHHHhcCCCeeec--cCceECcEEHHHHHHHHHHHH
Confidence 999999999987 356799999999999876 56666777776 77765544 468899999999999999988
Q ss_pred HhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCC-cccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHH
Q 010005 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP-FIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIV 317 (520)
Q Consensus 239 ~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~-~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (520)
+... .....+++||+++++++++.|+++.+.+.+|.+.+ ..++|.. . ......
T Consensus 210 ~~~~--~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~----------------~----~~~~~~---- 263 (315)
T 2ydy_A 210 EKRM--LDPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDS----------------P----VLGAQR---- 263 (315)
T ss_dssp HHHH--TCTTCCEEEECCCSCCBCHHHHHHHHHHHTTCCCTTEEEECSC----------------C----CSSSCC----
T ss_pred Hhhc--cccCCCCeEEEcCCCcccHHHHHHHHHHHhCCChhheeccccc----------------c----ccccCC----
Confidence 7310 01356789999999999999999999999998754 2233310 0 000000
Q ss_pred HHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhh
Q 010005 318 QLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (520)
Q Consensus 318 ~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~ 357 (520)
.....+|++|+++. ||+|.++++|+++++++||+++
T Consensus 264 ---~~~~~~d~~k~~~~-G~~p~~~~~~~l~~~~~~~~~~ 299 (315)
T 2ydy_A 264 ---PRNAQLDCSKLETL-GIGQRTPFRIGIKESLWPFLID 299 (315)
T ss_dssp ---CSBCCBCCHHHHHT-TCCCCCCHHHHHHHHHGGGCC-
T ss_pred ---CcccccchHHHHhc-CCCCCCCHHHHHHHHHHHHccc
Confidence 12467899999997 9999999999999999999875
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-39 Score=328.47 Aligned_cols=301 Identities=15% Similarity=0.110 Sum_probs=237.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCC------cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGK------CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIK 79 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~------~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~ 79 (520)
+++|+||||||+||||++++++|+++|+ ++|+++|+.. .... . ....+++++.+|++|.+++.
T Consensus 12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~--------~~~~--~-~~~~~~~~~~~Dl~d~~~~~ 80 (342)
T 2hrz_A 12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQ--------PEAP--A-GFSGAVDARAADLSAPGEAE 80 (342)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSC--------CCCC--T-TCCSEEEEEECCTTSTTHHH
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccC--------Cccc--c-ccCCceeEEEcCCCCHHHHH
Confidence 4568999999999999999999999993 4899965532 1100 0 12346888999999999999
Q ss_pred HHHc-CCCEEEEcccCCC--CCcchhhHHhhhHHHHHHHHHHHHHCC-----CCEEEEeecccccccCCCCCCCCCCCcc
Q 010005 80 KVLE-GASTVFYVDATDL--NTDDFYNCYMIIVQGAKNVVTACRECK-----VRRLVYNSTADVVFDGSHDIHNGDETLT 151 (520)
Q Consensus 80 ~~l~-~~D~Vih~aa~~~--~~~~~~~~~~~Nv~gt~~ll~aa~~~g-----vkr~V~~SS~~vyg~~~~~~~~~~E~~~ 151 (520)
++++ ++|+|||+|+... +..++...+++|+.|+.+++++|++.+ ++||||+||.++||.... .+.+|++
T Consensus 81 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~--~~~~E~~- 157 (342)
T 2hrz_A 81 KLVEARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLP--YPIPDEF- 157 (342)
T ss_dssp HHHHTCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSCC--SSBCTTC-
T ss_pred HHHhcCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCCC--CCcCCCC-
Confidence 9995 8999999999732 235678889999999999999999886 899999999999975422 3678877
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCcccc-CCCC-----CchHHHHHHhcCCCceEEecCCCcccccc
Q 010005 152 CCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFG-PGDT-----QLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (520)
Q Consensus 152 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyG-p~~~-----~~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (520)
+..|.+.|+.+|..+|++++.++.+.+++.+++|++.+|| |+.. .+++.++..+..|++..++++++...+++
T Consensus 158 -~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
T 2hrz_A 158 -HTTPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIRHWHA 236 (342)
T ss_dssp -CCCCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSGGGHHHHHHHHHHTTCCEEECSCTTCEEEEE
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchhHHHHHHHHHHHhcCCCeeccCCCccceeeE
Confidence 5578899999999999999999887889999999999999 7652 24666777777888777777777788899
Q ss_pred cHHHHHHHHHHHHHhhhccccc---CCCceEEEeCCCCcCHHHHHHHHHHHcCCCCC--cccCChHHHHHHHHHHHHHHH
Q 010005 226 YVENVAHAHVCAAEALDSRMVS---VAGMAFFITNLEPIKFWDFLSIILEGLGYQRP--FIKLPTGVVWYIILLVKWIHE 300 (520)
Q Consensus 226 ~v~Dva~ai~~~~~~~~~~~~~---~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~--~v~~p~~~~~~~~~~~~~~~~ 300 (520)
|++|+|++++.+++. +. ..+++||+++ ++++++|+++.+.+.+|.+.+ ....|...
T Consensus 237 ~v~Dva~~~~~~~~~-----~~~~~~~~~~~ni~g-~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~------------- 297 (342)
T 2hrz_A 237 SPRSAVGFLIHGAMI-----DVEKVGPRRNLSMPG-LSATVGEQIEALRKVAGEKAVALIRREPNEM------------- 297 (342)
T ss_dssp CHHHHHHHHHHHHHS-----CHHHHCSCCEEECCC-EEEEHHHHHHHHHHHHCHHHHTTEEECCCHH-------------
T ss_pred ehHHHHHHHHHHHhc-----cccccCCccEEEcCC-CCCCHHHHHHHHHHHcCcccccceeeccCcc-------------
Confidence 999999999999872 22 2567999964 779999999999999987531 11122110
Q ss_pred HhcccccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 010005 301 KLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFS 355 (520)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~ 355 (520)
.... .......+|++|+++ |||+|+++++|+|+++++||+
T Consensus 298 -------------~~~~-~~~~~~~~d~~k~~~-lG~~p~~~l~e~l~~~~~~~~ 337 (342)
T 2hrz_A 298 -------------IMRM-CEGWAPGFEAKRARE-LGFTAESSFEEIIQVHIEDEL 337 (342)
T ss_dssp -------------HHHH-HTTSCCCBCCHHHHH-TTCCCCSSHHHHHHHHHHHHS
T ss_pred -------------hhhh-hcccccccChHHHHH-cCCCCCCCHHHHHHHHHHHhc
Confidence 0000 001123579999999 999999999999999999997
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-39 Score=355.60 Aligned_cols=318 Identities=18% Similarity=0.184 Sum_probs=247.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhc-CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHH-HHHHHcC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ-IKKVLEG 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~-g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~-l~~~l~~ 84 (520)
++|+||||||+||||++++++|+++ | ++|+++++. ... ........+++++.+|++|.++ +.+++++
T Consensus 314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g-~~V~~~~r~--------~~~--~~~~~~~~~v~~v~~Dl~d~~~~~~~~~~~ 382 (660)
T 1z7e_A 314 RRTRVLILGVNGFIGNHLTERLLREDH-YEVYGLDIG--------SDA--ISRFLNHPHFHFVEGDISIHSEWIEYHVKK 382 (660)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHSSS-EEEEEEESC--------CTT--TGGGTTCTTEEEEECCTTTCHHHHHHHHHH
T ss_pred cCceEEEEcCCcHHHHHHHHHHHhcCC-CEEEEEEcC--------chh--hhhhccCCceEEEECCCCCcHHHHHHhhcC
Confidence 5689999999999999999999998 7 599995543 221 1112234578999999999764 7888999
Q ss_pred CCEEEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccC-----CCCC
Q 010005 85 ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC-----CWKF 156 (520)
Q Consensus 85 ~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~-----~~~p 156 (520)
+|+|||+||... ...++...+++|+.++.+++++|++.+ +||||+||.++||.... .+.+|+++. ...|
T Consensus 383 ~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~-~r~V~~SS~~vyg~~~~--~~~~E~~~~~~~~p~~~p 459 (660)
T 1z7e_A 383 CDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVYGMCSD--KYFDEDHSNLIVGPVNKP 459 (660)
T ss_dssp CSEEEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECCGGGGBTCCS--SSBCTTTCCEEECCTTCT
T ss_pred CCEEEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC-CEEEEEecHHHcCCCCC--cccCCCccccccCcccCC
Confidence 999999999733 235678899999999999999999999 89999999999975432 356776632 1246
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC----------CchHHHHHHhcCCCceEEecCCCccccccc
Q 010005 157 QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT----------QLVPLLVNLAKPGWTKFIIGSGENMSDFTY 226 (520)
Q Consensus 157 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~----------~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~ 226 (520)
.+.|+.+|..+|++++.++.+.|++++++||+.+|||+.. ..++.++..+..|.++.++++|++.++|+|
T Consensus 460 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 539 (660)
T 1z7e_A 460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTD 539 (660)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHHHTCCEEEEGGGCCEEECEE
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCCccccccccccccchHHHHHHHHHcCCCcEEeCCCCeEEEEEE
Confidence 6789999999999999987767999999999999999863 456777778888888888899999999999
Q ss_pred HHHHHHHHHHHHHhhhccccc--CCCceEEEeCCC-CcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhc
Q 010005 227 VENVAHAHVCAAEALDSRMVS--VAGMAFFITNLE-PIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLG 303 (520)
Q Consensus 227 v~Dva~ai~~~~~~~~~~~~~--~~g~~yni~~~~-~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~ 303 (520)
++|+|++++.+++. +. ..|++||+++++ ++++.|+++.+.+.+|.+...+.+|.+..... .+. ....+
T Consensus 540 v~Dva~ai~~~l~~-----~~~~~~g~~~ni~~~~~~~s~~el~~~i~~~~g~~~~~~~~p~~~~~~~---~~~-~~~~~ 610 (660)
T 1z7e_A 540 IRDGIEALYRIIEN-----AGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRV---VES-SSYYG 610 (660)
T ss_dssp HHHHHHHHHHHHHC-----GGGTTTTEEEEECCGGGEEEHHHHHHHHHHHHHHCTTGGGSCCCCCEEE---ECT-HHHHC
T ss_pred HHHHHHHHHHHHhC-----ccccCCCeEEEECCCCCCcCHHHHHHHHHHHhcCCCcccccCccccccc---hhc-ccccc
Confidence 99999999999882 22 467899999986 89999999999999987755555553210000 000 00000
Q ss_pred ccccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 304 LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
.. .. ......+|++|++++|||+|+++++|+++++++||+++..
T Consensus 611 ~~---~~---------~~~~~~~d~~ka~~~LG~~p~~~l~egl~~~i~~~~~~~~ 654 (660)
T 1z7e_A 611 KG---YQ---------DVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVD 654 (660)
T ss_dssp TT---CC---------CCSCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHTTSC
T ss_pred cc---cc---------chhhcccCHHHHHHhcCCCccCcHHHHHHHHHHHHHhhcc
Confidence 00 00 0124577999999999999999999999999999988653
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-38 Score=350.02 Aligned_cols=318 Identities=17% Similarity=0.204 Sum_probs=238.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
+++|+||||||+||||++++++|+++| ++|+++|+.... .......+. .+...+++++.+|++|.+++.++++
T Consensus 9 ~~~~~ilVTGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~---~~~~~~~l~-~~~~~~v~~v~~Dl~d~~~l~~~~~~~ 83 (699)
T 1z45_A 9 STSKIVLVTGGAGYIGSHTVVELIENG-YDCVVADNLSNS---TYDSVARLE-VLTKHHIPFYEVDLCDRKGLEKVFKEY 83 (699)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSC---CTHHHHHHH-HHHTSCCCEEECCTTCHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCCcc---hHHHHHHHh-hccCCceEEEEcCCCCHHHHHHHHHhC
Confidence 356899999999999999999999999 599996543210 000000000 0012467899999999999999998
Q ss_pred CCCEEEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCC--CCCCCCCCccCCCCCCC
Q 010005 84 GASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSH--DIHNGDETLTCCWKFQD 158 (520)
Q Consensus 84 ~~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~--~~~~~~E~~~~~~~p~~ 158 (520)
++|+|||+|+... ...++...+++|+.++.+++++|++.+++||||+||.++||.... ...+.+|+. +..|.+
T Consensus 84 ~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS~~vyg~~~~~~~~~~~~E~~--~~~p~~ 161 (699)
T 1z45_A 84 KIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEEC--PLGPTN 161 (699)
T ss_dssp CCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTS--CCCCCS
T ss_pred CCCEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHHHhCCCccccccCCccccC--CCCCCC
Confidence 8999999999732 223566789999999999999999999999999999999975431 123567776 557889
Q ss_pred hHHHHHHHHHHHHHHhcCC--CCceEEEEecCccccCCCC------------CchHHHHHHhcC-CCceEEec------C
Q 010005 159 LMCDLKAQAEALVLFANNI--DGLLTCALRPSNVFGPGDT------------QLVPLLVNLAKP-GWTKFIIG------S 217 (520)
Q Consensus 159 ~Y~~sK~~~E~~~~~~~~~--~gi~~~ilRp~~vyGp~~~------------~~~~~l~~~~~~-g~~~~i~g------~ 217 (520)
.|+.+|..+|++++.++.+ .|++++++||+++|||+.. .+++.+...+.. ++++.+++ +
T Consensus 162 ~Y~~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 241 (699)
T 1z45_A 162 PYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRD 241 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CC
T ss_pred hHHHHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCcccccccccccchhHHHHHHHHHHhcCCCceEEeCCcccCCC
Confidence 9999999999999988655 6899999999999998532 345555555442 34555665 6
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcc-cccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHH
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSR-MVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVK 296 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~-~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~ 296 (520)
|++.++|+|++|+|++++.+++..... .....+++||+++++++++.|+++.+.+.+|.+.+....|.
T Consensus 242 g~~~~~~i~v~Dva~a~~~a~~~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~----------- 310 (699)
T 1z45_A 242 GTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGR----------- 310 (699)
T ss_dssp SSCEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC----------------
T ss_pred CCeeEeeEEHHHHHHHHHHHHhhhhccccccCCceEEEECCCCCCcHHHHHHHHHHHhCCCCCceecCC-----------
Confidence 889999999999999999998743210 01223579999999999999999999999998754322110
Q ss_pred HHHHHhcccccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhcc
Q 010005 297 WIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDS 361 (520)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~~ 361 (520)
..+ . .....+|++|++++|||+|+++++|+|+++++||+++....
T Consensus 311 ----~~~----~------------~~~~~~d~~ka~~~LG~~p~~~l~egl~~~~~w~~~~~~~~ 355 (699)
T 1z45_A 311 ----RAG----D------------VLNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTTENPFGY 355 (699)
T ss_dssp ------------------------CCCCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHCTTCS
T ss_pred ----CCC----c------------cccccCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhCCcch
Confidence 000 0 12467899999999999999999999999999998876543
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-39 Score=325.47 Aligned_cols=301 Identities=21% Similarity=0.242 Sum_probs=214.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC----CCCCCCC--CCCcEEEEecCCCHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS----LLPDSLS--SGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~----~l~~~~~--~~~v~~~~~Dl~d~~~l~~ 80 (520)
++|+||||||+||||++++++|+++| ++|++++ |+.... .+.+ +. ..+++++.+|++|.+++.+
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~--------r~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~ 73 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERG-YTVRATV--------RDPTNVKKVKHLLD-LPKAETHLTLWKADLADEGSFDE 73 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTT-CEEEEEE--------SCTTCHHHHHHHHT-STTHHHHEEEEECCTTSTTTTHH
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEE--------CCcchhHHHHHHHh-cccCCCeEEEEEcCCCCHHHHHH
Confidence 56899999999999999999999999 5999843 332210 0000 11 1257889999999999999
Q ss_pred HHcCCCEEEEcccCCC-CCcch-hhHHhhhHHHHHHHHHHHHHCC-CCEEEEeecccccccCCCCCCCCCCCccCCC---
Q 010005 81 VLEGASTVFYVDATDL-NTDDF-YNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCW--- 154 (520)
Q Consensus 81 ~l~~~D~Vih~aa~~~-~~~~~-~~~~~~Nv~gt~~ll~aa~~~g-vkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~--- 154 (520)
+++++|+|||+|+... ...++ ...+++|+.|+.+++++|++.+ ++||||+||.++|+.......+.+|+.+.+.
T Consensus 74 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~ 153 (337)
T 2c29_D 74 AIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFC 153 (337)
T ss_dssp HHTTCSEEEECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTCCCCHHHH
T ss_pred HHcCCCEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCcccCCchhhh
Confidence 9999999999998732 22333 3589999999999999999988 8999999999854322222234566653221
Q ss_pred ----CCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHh---cCCCceEEecCCCcccccccH
Q 010005 155 ----KFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLA---KPGWTKFIIGSGENMSDFTYV 227 (520)
Q Consensus 155 ----~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~---~~g~~~~i~g~g~~~~~~i~v 227 (520)
.|.++|+.||..+|+++..++.++|++++++||+++|||+....++...... ..|... ..+++. ...|+|+
T Consensus 154 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~-~~~~~~-~~~~i~v 231 (337)
T 2c29_D 154 RAKKMTAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEA-HYSIIR-QGQFVHL 231 (337)
T ss_dssp HHHCCTTHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCSSCCHHHHHHTHHHHTCGG-GHHHHT-EEEEEEH
T ss_pred cccCCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCCc-cccccC-CCCEEEH
Confidence 2456899999999999998876679999999999999998653222222221 223321 222222 2359999
Q ss_pred HHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhccccc
Q 010005 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTY 307 (520)
Q Consensus 228 ~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~ 307 (520)
+|+|++++.+++ . ...++.|++++ ..++++|+++.+.+.++.. .+|... .
T Consensus 232 ~Dva~a~~~~~~-----~-~~~~~~~~~~~-~~~s~~e~~~~i~~~~~~~----~~~~~~---------------~---- 281 (337)
T 2c29_D 232 DDLCNAHIYLFE-----N-PKAEGRYICSS-HDCIILDLAKMLREKYPEY----NIPTEF---------------K---- 281 (337)
T ss_dssp HHHHHHHHHHHH-----C-TTCCEEEEECC-EEEEHHHHHHHHHHHCTTS----CCCSCC---------------T----
T ss_pred HHHHHHHHHHhc-----C-cccCceEEEeC-CCCCHHHHHHHHHHHCCCc----cCCCCC---------------C----
Confidence 999999999887 2 23345776655 5689999999999987431 122100 0
Q ss_pred CCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhh
Q 010005 308 NHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (520)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~ 358 (520)
..+. ......+|++|+ ++|||+|+++++|+++++++||++..
T Consensus 282 ~~~~--------~~~~~~~d~~k~-~~lG~~p~~~l~e~l~~~~~~~~~~~ 323 (337)
T 2c29_D 282 GVDE--------NLKSVCFSSKKL-TDLGFEFKYSLEDMFTGAVDTCRAKG 323 (337)
T ss_dssp TCCT--------TCCCCEECCHHH-HHHTCCCCCCHHHHHHHHHHHHHHTT
T ss_pred cccC--------CCccccccHHHH-HHcCCCcCCCHHHHHHHHHHHHHHcC
Confidence 0000 012467899999 77999999999999999999998754
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=328.97 Aligned_cols=301 Identities=21% Similarity=0.204 Sum_probs=210.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CC---CCCCCCCCcEEEEecCCCHHHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LL---PDSLSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l---~~~~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
++|+||||||+||||++++++|+++| ++|++++ |+.... .. .......+++++.+|++|.+++.+++
T Consensus 8 ~~~~vlVTGatGfIG~~l~~~Ll~~G-~~V~~~~--------r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 78 (338)
T 2rh8_A 8 GKKTACVVGGTGFVASLLVKLLLQKG-YAVNTTV--------RDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPI 78 (338)
T ss_dssp -CCEEEEECTTSHHHHHHHHHHHHTT-CEEEEEE--------SCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHH
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEE--------cCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHH
Confidence 46899999999999999999999999 5999843 332210 00 00001246889999999999999999
Q ss_pred cCCCEEEEcccCC-CCCcch-hhHHhhhHHHHHHHHHHHHHCC-CCEEEEeecccc-cccCCC-CCCCCCCCccCCC---
Q 010005 83 EGASTVFYVDATD-LNTDDF-YNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADV-VFDGSH-DIHNGDETLTCCW--- 154 (520)
Q Consensus 83 ~~~D~Vih~aa~~-~~~~~~-~~~~~~Nv~gt~~ll~aa~~~g-vkr~V~~SS~~v-yg~~~~-~~~~~~E~~~~~~--- 154 (520)
+++|+|||+|+.. ....++ ...+++|+.|+.+++++|++.+ ++||||+||.++ |+.... ...+.+|+.+.+.
T Consensus 79 ~~~D~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~ 158 (338)
T 2rh8_A 79 AGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFL 158 (338)
T ss_dssp TTCSEEEEESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTTTTCC---
T ss_pred cCCCEEEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhhccchhhc
Confidence 9999999999873 222333 3489999999999999999996 999999999884 432211 1125677653221
Q ss_pred ---CC-CChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHH---hcCCCceEEecCC------Ccc
Q 010005 155 ---KF-QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNL---AKPGWTKFIIGSG------ENM 221 (520)
Q Consensus 155 ---~p-~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~---~~~g~~~~i~g~g------~~~ 221 (520)
.| .+.|+.||..+|+++..+++++|++++++||+++|||+....++..+.. ...|++. ..+++ ...
T Consensus 159 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~ 237 (338)
T 2rh8_A 159 TSAKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEF-LINGMKGMQMLSGS 237 (338)
T ss_dssp ----CCCCCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSSSSCCHHHHHHHHHHHTCHH-HHHHHHHHHHHHSS
T ss_pred cccCCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCcc-ccccccccccccCc
Confidence 12 2369999999999999887667999999999999999875322222211 1234331 12211 123
Q ss_pred cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHH
Q 010005 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEK 301 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~ 301 (520)
++|+|++|+|++++.+++ ....++.|++++ +.++++|+++.+.+.++.. .+|...
T Consensus 238 ~~~i~v~Dva~a~~~~~~------~~~~~~~~~~~~-~~~s~~e~~~~l~~~~~~~----~~~~~~-------------- 292 (338)
T 2rh8_A 238 VSIAHVEDVCRAHIFVAE------KESASGRYICCA-ANTSVPELAKFLSKRYPQY----KVPTDF-------------- 292 (338)
T ss_dssp EEEEEHHHHHHHHHHHHH------CTTCCEEEEECS-EEECHHHHHHHHHHHCTTS----CCCCCC--------------
T ss_pred ccEEEHHHHHHHHHHHHc------CCCcCCcEEEec-CCCCHHHHHHHHHHhCCCC----CCCCCC--------------
Confidence 489999999999999887 223345788876 5699999999999987531 122110
Q ss_pred hcccccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhh
Q 010005 302 LGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (520)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~ 357 (520)
+ ..+. .....+|++|+ ++|||+|+++++|+++++++||++.
T Consensus 293 -~----~~~~---------~~~~~~d~~k~-~~lG~~p~~~l~~gl~~~~~~~~~~ 333 (338)
T 2rh8_A 293 -G----DFPP---------KSKLIISSEKL-VKEGFSFKYGIEEIYDESVEYFKAK 333 (338)
T ss_dssp -T----TSCS---------SCSCCCCCHHH-HHHTCCCSCCHHHHHHHHHHHHHHT
T ss_pred -C----CCCc---------CcceeechHHH-HHhCCCCCCCHHHHHHHHHHHHHHc
Confidence 0 0000 01256799999 5599999999999999999999865
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-38 Score=317.05 Aligned_cols=300 Identities=19% Similarity=0.182 Sum_probs=211.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCC-CCCC-CCCC--CCCC--CCCcEEEEecCCCHHHHHHH
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDP-SESN-SLLP--DSLS--SGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r-~~~~-~~l~--~~~~--~~~v~~~~~Dl~d~~~l~~~ 81 (520)
+|+||||||+||||++++++|+++| ++|+++ .| ++.. .... ..+. ..+++++.+|++|.+++.++
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G-~~V~~~--------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 71 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENG-YSVNTT--------IRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAA 71 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEE--------CCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHH
T ss_pred CCEEEEECChhHHHHHHHHHHHHCC-CEEEEE--------EeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHH
Confidence 3789999999999999999999999 599984 33 2210 0000 0011 12467889999999999999
Q ss_pred HcCCCEEEEcccCC-CCCcc-hhhHHhhhHHHHHHHHHHHHHC-CCCEEEEeecccccccCCCCCCCCCCCccCC-----
Q 010005 82 LEGASTVFYVDATD-LNTDD-FYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGSHDIHNGDETLTCC----- 153 (520)
Q Consensus 82 l~~~D~Vih~aa~~-~~~~~-~~~~~~~Nv~gt~~ll~aa~~~-gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~----- 153 (520)
++++|+|||+|+.. ....+ ...++++|+.|+.+++++|++. +++||||+||.++++.......+.+|+.+.+
T Consensus 72 ~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~ 151 (322)
T 2p4h_X 72 IEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLR 151 (322)
T ss_dssp HTTCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHH
T ss_pred HcCCCEEEEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCCCCeecCCccccchhhhc
Confidence 99999999999763 12223 3458999999999999999998 7999999999986533222223456654321
Q ss_pred -CCCCC-hHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHH---hcCCCceEEecCCCcccccccHH
Q 010005 154 -WKFQD-LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNL---AKPGWTKFIIGSGENMSDFTYVE 228 (520)
Q Consensus 154 -~~p~~-~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~---~~~g~~~~i~g~g~~~~~~i~v~ 228 (520)
..|.+ .|+.||..+|+++..+++++|++++++||+.+|||+....++..... ...|.... .++ ..++|+|++
T Consensus 152 ~~~p~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~g~~~~-~~~--~~~~~i~v~ 228 (322)
T 2p4h_X 152 SVKPFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQ-IGV--TRFHMVHVD 228 (322)
T ss_dssp HHCCTTHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCSSSCCHHHHHHTHHHHSCGGG-CCE--EEEEEEEHH
T ss_pred ccCcccccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCCCCCCchHHHHHHHHhCCCcc-CcC--CCcCEEEHH
Confidence 12333 69999999999999988768999999999999999865322222211 12343322 222 234899999
Q ss_pred HHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccC
Q 010005 229 NVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYN 308 (520)
Q Consensus 229 Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~ 308 (520)
|+|++++.+++ .+...| .|| +++++++++|+++.+.+..+. ..+|... ..+ .
T Consensus 229 Dva~a~~~~~~-----~~~~~g-~~~-~~~~~~s~~e~~~~i~~~~~~----~~~~~~~-------------~~~----~ 280 (322)
T 2p4h_X 229 DVARAHIYLLE-----NSVPGG-RYN-CSPFIVPIEEMSQLLSAKYPE----YQILTVD-------------ELK----E 280 (322)
T ss_dssp HHHHHHHHHHH-----SCCCCE-EEE-CCCEEEEHHHHHHHHHHHCTT----SCCCCTT-------------TTT----T
T ss_pred HHHHHHHHHhh-----CcCCCC-CEE-EcCCCCCHHHHHHHHHHhCCC----CCCCCCc-------------ccc----C
Confidence 99999999887 233344 588 566889999999999988742 1222110 000 0
Q ss_pred CCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhh
Q 010005 309 HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (520)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~ 357 (520)
.+. .....+|++|+ ++|||+|+++++|+++++++||++.
T Consensus 281 ~~~---------~~~~~~d~~k~-~~lG~~p~~~~~~~l~~~~~~~~~~ 319 (322)
T 2p4h_X 281 IKG---------ARLPDLNTKKL-VDAGFDFKYTIEDMFDDAIQCCKEK 319 (322)
T ss_dssp CCC---------EECCEECCHHH-HHTTCCCCCCHHHHHHHHHHHHHHH
T ss_pred CCC---------CcceecccHHH-HHhCCccCCCHHHHHHHHHHHHHhc
Confidence 010 02467899999 5599999999999999999999864
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-37 Score=307.58 Aligned_cols=283 Identities=16% Similarity=0.105 Sum_probs=217.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCEE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~V 88 (520)
|||||||||||||++|+++|+++|| +|++ +.|++.+. .+..| +...+.++++|+|
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~-~V~~--------l~R~~~~~------------~~~~~----~~~~~~l~~~d~v 55 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGH-EVTL--------VSRKPGPG------------RITWD----ELAASGLPSCDAA 55 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEE--------EESSCCTT------------EEEHH----HHHHHCCCSCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-EEEE--------EECCCCcC------------eeecc----hhhHhhccCCCEE
Confidence 7899999999999999999999994 9999 56654321 12222 2335567899999
Q ss_pred EEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHCCC--CEEEEeecccccccCCCCCCCCCCCccCCCCCCCh
Q 010005 89 FYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECKV--RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDL 159 (520)
Q Consensus 89 ih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~gv--kr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~ 159 (520)
||+|+... .......+++.|+.+|.++++++++.++ ++||++||.++||+... .+.+|++ +..|.+.
T Consensus 56 ihla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~--~~~~E~~--p~~~~~~ 131 (298)
T 4b4o_A 56 VNLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLT--AEYDEDS--PGGDFDF 131 (298)
T ss_dssp EECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCSS--CCBCTTC--CCSCSSH
T ss_pred EEeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCCC--CcccccC--Cccccch
Confidence 99998621 1223456889999999999999999874 46999999999976543 4677877 5677888
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHH
Q 010005 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 160 Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~ 239 (520)
|+..|...|... .....+++++++||+.||||++ ..+..+......|.. ..+|+|+++++|||++|+|+++..+++
T Consensus 132 ~~~~~~~~e~~~--~~~~~~~~~~~~r~~~v~g~~~-~~~~~~~~~~~~~~~-~~~g~g~~~~~~ihv~Dva~a~~~~~~ 207 (298)
T 4b4o_A 132 FSNLVTKWEAAA--RLPGDSTRQVVVRSGVVLGRGG-GAMGHMLLPFRLGLG-GPIGSGHQFFPWIHIGDLAGILTHALE 207 (298)
T ss_dssp HHHHHHHHHHHH--CCSSSSSEEEEEEECEEECTTS-HHHHHHHHHHHTTCC-CCBTTSCSBCCEEEHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH--HhhccCCceeeeeeeeEEcCCC-CchhHHHHHHhcCCc-ceecccCceeecCcHHHHHHHHHHHHh
Confidence 998888887654 3445799999999999999985 455666666666665 467999999999999999999999998
Q ss_pred hhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHH
Q 010005 240 ALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQL 319 (520)
Q Consensus 240 ~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (520)
....+++||+++++++|++|+++.+++.+|++. .+++|.+++..... +... ..
T Consensus 208 ------~~~~~g~yn~~~~~~~t~~e~~~~ia~~lgrp~-~~pvP~~~~~~~~g--~~~~------------------~~ 260 (298)
T 4b4o_A 208 ------ANHVHGVLNGVAPSSATNAEFAQTFGAALGRRA-FIPLPSAVVQAVFG--RQRA------------------IM 260 (298)
T ss_dssp ------CTTCCEEEEESCSCCCBHHHHHHHHHHHHTCCC-CCCBCHHHHHHHHC--HHHH------------------HH
T ss_pred ------CCCCCCeEEEECCCccCHHHHHHHHHHHhCcCC-cccCCHHHHHHHhc--chhH------------------HH
Confidence 334456999999999999999999999999764 46788776553211 1111 11
Q ss_pred hccceEechHHHHHhcCCCCCC-CHHHHHHHHHH
Q 010005 320 ASRTRTFDCIAAQKHIGYSPVV-SLEEGVSSTIQ 352 (520)
Q Consensus 320 ~~~~~~~d~~ka~~~LG~~p~~-sleegi~~~~~ 352 (520)
...+..++++|+++ +||++++ +++|++++.++
T Consensus 261 ~l~~~rv~~~kl~~-~Gf~f~yp~l~~al~~l~~ 293 (298)
T 4b4o_A 261 LLEGQKVIPRRTLA-TGYQYSFPELGAALKEIAE 293 (298)
T ss_dssp HHCCCCBCCHHHHH-TTCCCSCCSHHHHHHHHHH
T ss_pred hhCCCEEcHHHHHH-CCCCCCCCCHHHHHHHHHH
Confidence 12245567889976 8999998 69999999887
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=321.70 Aligned_cols=301 Identities=16% Similarity=0.079 Sum_probs=230.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC---CCCCcEEE-EecCCCHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL---SSGRAEYH-QVDVRDISQIKK 80 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~---~~~~v~~~-~~Dl~d~~~l~~ 80 (520)
.++|+||||||+||||++++++|+++| ++|+++++. ..+. .+...+ ...+++++ .+|++|.+++.+
T Consensus 9 ~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~ 79 (342)
T 1y1p_A 9 PEGSLVLVTGANGFVASHVVEQLLEHG-YKVRGTARS--------ASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDE 79 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESS--------HHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTT
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCC--------cccHHHHHHHhhccCCCceEEEEecCCcChHHHHH
Confidence 456899999999999999999999999 599995543 2110 000000 01467888 799999999999
Q ss_pred HHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHH-CCCCEEEEeecccccccCCCC--CCCCCCCccC-----
Q 010005 81 VLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRE-CKVRRLVYNSTADVVFDGSHD--IHNGDETLTC----- 152 (520)
Q Consensus 81 ~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~-~gvkr~V~~SS~~vyg~~~~~--~~~~~E~~~~----- 152 (520)
+++++|+|||+|+......++...+++|+.++.+++++|++ .+++||||+||.++|+..... ..+.+|+++.
T Consensus 80 ~~~~~d~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~ 159 (342)
T 1y1p_A 80 VIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESID 159 (342)
T ss_dssp TTTTCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHH
T ss_pred HHcCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCCCCCCcccCccccCchhhh
Confidence 99999999999998544467888999999999999999995 678999999999999643221 1356676521
Q ss_pred ---------CCCCCChHHHHHHHHHHHHHHhcCCC--CceEEEEecCccccCCCCC-----chHHHHHHhcCCCceEEec
Q 010005 153 ---------CWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQ-----LVPLLVNLAKPGWTKFIIG 216 (520)
Q Consensus 153 ---------~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~vyGp~~~~-----~~~~l~~~~~~g~~~~i~g 216 (520)
+..|.+.|+.+|..+|++++.++.++ +++++++||+.+|||+... .++.++..+..|++..+.+
T Consensus 160 ~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (342)
T 1y1p_A 160 KAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALA 239 (342)
T ss_dssp HHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHH
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCCCccHHHHHHHHHcCCCccccc
Confidence 23466789999999999999887543 7899999999999997642 6778888888888766666
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHH
Q 010005 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVK 296 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~ 296 (520)
++ +.++|+|++|+|++++.+++ .+...|+.+ +++++++|+.|+++.+.+.+|.+. +..+
T Consensus 240 ~~-~~~~~v~v~Dva~a~~~~~~-----~~~~~g~~~-~~~g~~~s~~e~~~~i~~~~~~~~--~~~~------------ 298 (342)
T 1y1p_A 240 LM-PPQYYVSAVDIGLLHLGCLV-----LPQIERRRV-YGTAGTFDWNTVLATFRKLYPSKT--FPAD------------ 298 (342)
T ss_dssp TC-CSEEEEEHHHHHHHHHHHHH-----CTTCCSCEE-EECCEEECHHHHHHHHHHHCTTSC--CCCC------------
T ss_pred cC-CcCCEeEHHHHHHHHHHHHc-----CcccCCceE-EEeCCCCCHHHHHHHHHHHCCCcc--CCCC------------
Confidence 65 77899999999999999988 233455555 455678999999999999998751 1111
Q ss_pred HHHHHhcccccCCCCchHHHHHHhccceEechHHHHHhcCC---CCCCCHHHHHHHHHHHHH
Q 010005 297 WIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGY---SPVVSLEEGVSSTIQSFS 355 (520)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~---~p~~sleegi~~~~~~~~ 355 (520)
.+... .....+|++|+++.||| .|..+++|+|+++++||+
T Consensus 299 ------------~~~~~-------~~~~~~d~~k~~~~lg~~~~~~~~~l~~~l~~~~~~~~ 341 (342)
T 1y1p_A 299 ------------FPDQG-------QDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSET 341 (342)
T ss_dssp ------------CCCCC-------CCCCEECCHHHHHHHHHTTCCSCCCHHHHHHHHHCCSC
T ss_pred ------------CCccc-------cccccCChHHHHHHHhhcccCCcCCHHHHHHHHHHHhh
Confidence 00000 01356799999998887 566799999999999875
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-36 Score=321.97 Aligned_cols=292 Identities=15% Similarity=0.122 Sum_probs=215.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCE
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~ 87 (520)
+|+||||||+||||++|++.|+++| ++|+++ .|+..+ .+.+.+|+.|. +.++++++|+
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G-~~V~~l--------~R~~~~-----------~~~v~~d~~~~--~~~~l~~~D~ 204 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGG-HEVIQL--------VRKEPK-----------PGKRFWDPLNP--ASDLLDGADV 204 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEE--------ESSSCC-----------TTCEECCTTSC--CTTTTTTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEE--------ECCCCC-----------ccceeecccch--hHHhcCCCCE
Confidence 7899999999999999999999999 599994 444331 12367788754 3667789999
Q ss_pred EEEcccCC----CCCcchhhHHhhhHHHHHHHHHH-HHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHH
Q 010005 88 VFYVDATD----LNTDDFYNCYMIIVQGAKNVVTA-CRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (520)
Q Consensus 88 Vih~aa~~----~~~~~~~~~~~~Nv~gt~~ll~a-a~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~ 162 (520)
|||+|+.. ....++..++++|+.++.+++++ +++.++++|||+||.++||... ...+.+|+.+. |.+.|+.
T Consensus 205 Vih~A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~~vyg~~~-~~~~~~E~~~~---~~~~y~~ 280 (516)
T 3oh8_A 205 LVHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASAVGFYGHDR-GDEILTEESES---GDDFLAE 280 (516)
T ss_dssp EEECCCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEGGGGCSEE-EEEEECTTSCC---CSSHHHH
T ss_pred EEECCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcceEecCCC-CCCccCCCCCC---CcChHHH
Confidence 99999973 13356778899999999999999 6777899999999999997322 22356787643 7889999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhh
Q 010005 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242 (520)
Q Consensus 163 sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~ 242 (520)
+|...|.++..+. +.|++++++||+.+|||+. ..++.+...+..|.. ..+++|++.++|+|++|+|++++.+++
T Consensus 281 ~~~~~E~~~~~~~-~~gi~~~ilRp~~v~Gp~~-~~~~~~~~~~~~g~~-~~~g~g~~~~~~i~v~Dva~ai~~~l~--- 354 (516)
T 3oh8_A 281 VCRDWEHATAPAS-DAGKRVAFIRTGVALSGRG-GMLPLLKTLFSTGLG-GKFGDGTSWFSWIAIDDLTDIYYRAIV--- 354 (516)
T ss_dssp HHHHHHHTTHHHH-HTTCEEEEEEECEEEBTTB-SHHHHHHHTTC---C-CCCTTSCCEECEEEHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHH-hCCCCEEEEEeeEEECCCC-ChHHHHHHHHHhCCC-cccCCCCceEceEeHHHHHHHHHHHHh---
Confidence 9999998876543 4799999999999999985 567777777777765 467899999999999999999999998
Q ss_pred cccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhcc
Q 010005 243 SRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASR 322 (520)
Q Consensus 243 ~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (520)
....+++||+++++++|++|+++.+.+.+|.+. .+.+|.+.... ..+... .......
T Consensus 355 ---~~~~~g~~ni~~~~~~s~~el~~~i~~~~g~~~-~~~~p~~~~~~----------~~g~~~---------~~~~~~~ 411 (516)
T 3oh8_A 355 ---DAQISGPINAVAPNPVSNADMTKILATSMHRPA-FIQIPSLGPKI----------LLGSQG---------AEELALA 411 (516)
T ss_dssp ---CTTCCEEEEESCSCCEEHHHHHHHTTC--------------------------------CC---------GGGGGGC
T ss_pred ---CcccCCcEEEECCCCCCHHHHHHHHHHHhCCCC-CCCCCHHHHHH----------HhCCch---------hHHHhhc
Confidence 233456999999999999999999999999764 44555443211 011000 0112233
Q ss_pred ceEechHHHHHhcCCCCCCC-HHHHHHHHHHHHH
Q 010005 323 TRTFDCIAAQKHIGYSPVVS-LEEGVSSTIQSFS 355 (520)
Q Consensus 323 ~~~~d~~ka~~~LG~~p~~s-leegi~~~~~~~~ 355 (520)
+..++++|+++ |||+|+++ ++|+++++++...
T Consensus 412 ~~~~~~~kl~~-lG~~~~~~~l~e~l~~~l~~~~ 444 (516)
T 3oh8_A 412 SQRTAPAALEN-LSHTFRYTDIGAAIAHELGYEQ 444 (516)
T ss_dssp EEEECCHHHHH-TTCCCSCSSHHHHHHHHHTCCC
T ss_pred CCeechHHHHH-CCCCCCCCCHHHHHHHHhCccc
Confidence 56788999985 99999997 9999999988543
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-35 Score=305.90 Aligned_cols=317 Identities=15% Similarity=0.081 Sum_probs=228.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC--------CCCC-------CCCCCCcEEEEe
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS--------LLPD-------SLSSGRAEYHQV 70 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~--------~l~~-------~~~~~~v~~~~~ 70 (520)
.++|+||||||+||||+++++.|+++| ++|++++ |++... .+.. .....+++++.+
T Consensus 67 ~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~--------R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~ 137 (427)
T 4f6c_A 67 RPLGNTLLTGATGFLGAYLIEALQGYS-HRIYCFI--------RADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVG 137 (427)
T ss_dssp CCCEEEEEECTTSHHHHHHHHHHTTTE-EEEEEEE--------ECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEE
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHcCC-CEEEEEE--------CCCChHHHHHHHHHHHHHhccccccccccCceEEEeC
Confidence 456799999999999999999999999 6999954 443200 0000 001257899999
Q ss_pred cCCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccC---CCCCCCCC
Q 010005 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDG---SHDIHNGD 147 (520)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~---~~~~~~~~ 147 (520)
|++|.+++. .+.++|+|||+||......++...+++|+.|+.+++++|++ ++++|||+||.++ |.. .....+.+
T Consensus 138 Dl~d~~~l~-~~~~~d~Vih~A~~~~~~~~~~~~~~~Nv~g~~~l~~aa~~-~~~~~v~~SS~~~-G~~~~~~~~~~~~~ 214 (427)
T 4f6c_A 138 DFECMDDVV-LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISV-GTYFDIDTEDVTFS 214 (427)
T ss_dssp CC---CCCC-CSSCCSEEEECCCCC-------CHHHHHHHHHHHHHHHHHH-TTCEEEEEEEGGG-GSEECSSCSCCEEC
T ss_pred CCCCcccCC-CcCCCCEEEECCcccCCCCCHHHHHHHHHHHHHHHHHHHHh-cCCcEEEECchHh-CCCccCCCCCcccc
Confidence 999988777 77789999999998555577889999999999999999999 8899999999999 542 22334667
Q ss_pred CCccC-CCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCc---------hHHHHHHhcCCCceEEecC
Q 010005 148 ETLTC-CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQL---------VPLLVNLAKPGWTKFIIGS 217 (520)
Q Consensus 148 E~~~~-~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~---------~~~l~~~~~~g~~~~i~g~ 217 (520)
|+++. +..|.+.|+.+|+.+|++++.+.+ .|++++++||+.||||+.... ++.++..+..+..+.. ++
T Consensus 215 E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~ivRpg~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 292 (427)
T 4f6c_A 215 EADVYKGQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGV-SM 292 (427)
T ss_dssp TTCSCSSCCCCSHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCEESCSSSCCCCTTGGGCHHHHHHHHHHHSSEEEH-HH
T ss_pred ccccccCCCCCCchHHHHHHHHHHHHHHHH-cCCCEEEEeCCeeecCCCCCccccCcchHHHHHHHHHHHhcCCCCC-cc
Confidence 77643 245889999999999999999865 799999999999999987542 6677777777765433 45
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHH
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKW 297 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~ 297 (520)
++..++|+|++|+|++++.+++ .+. .+++||+++++++++.|+++.+.+ +| .+.++.+.|.......
T Consensus 293 ~~~~~~~v~v~DvA~ai~~~~~-----~~~-~g~~~~l~~~~~~s~~el~~~i~~-~g--~~~~~~~~~~~~l~~~---- 359 (427)
T 4f6c_A 293 AEMPVDFSFVDTTARQIVALAQ-----VNT-PQIIYHVLSPNKMPVKSLLECVKR-KE--IELVSDESFNEILQKQ---- 359 (427)
T ss_dssp HTCEECCEEHHHHHHHHHHHTT-----SCC-CCSEEEESCSCCEEHHHHHHHHHS-SC--CEEECHHHHHHHHHHT----
T ss_pred ccceEEEeeHHHHHHHHHHHHc-----CCC-CCCEEEecCCCCCcHHHHHHHHHH-cC--CcccCHHHHHHHHHhc----
Confidence 6889999999999999999887 233 889999999999999999999998 66 3333333322211110
Q ss_pred HHHHhcccccCCCCchHH-HHHHhccceEechHHHH---HhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 298 IHEKLGLRTYNHSLSACY-IVQLASRTRTFDCIAAQ---KHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~ka~---~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
+. +++... .-........+|+++.. +.+||++...-++.++++++++++...
T Consensus 360 -----~~-----~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~l~~~~~ 415 (427)
T 4f6c_A 360 -----DM-----YETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFN 415 (427)
T ss_dssp -----TC-----HHHHHHHHHHHTSEECEECCHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHC
T ss_pred -----Cc-----hhhhhhhhccccCCceeccHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 00 000000 00112235677888776 456998875567799999999988754
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=286.17 Aligned_cols=279 Identities=14% Similarity=0.135 Sum_probs=211.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhc--CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLEL--GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~--g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
|+||||||+||||+++++.|+++ | ++|++++ |++.+. . .+...+++++.+|+.|++++.++++++|
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g-~~V~~~~--------r~~~~~--~-~l~~~~~~~~~~D~~d~~~l~~~~~~~d 68 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPA-SQIIAIV--------RNVEKA--S-TLADQGVEVRHGDYNQPESLQKAFAGVS 68 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCG-GGEEEEE--------SCTTTT--H-HHHHTTCEEEECCTTCHHHHHHHTTTCS
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCC-CeEEEEE--------cCHHHH--h-HHhhcCCeEEEeccCCHHHHHHHHhcCC
Confidence 57999999999999999999998 8 6999954 433211 0 1112468899999999999999999999
Q ss_pred EEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHH
Q 010005 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQ 166 (520)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~ 166 (520)
+|||+|+... . .++|+.++.+++++|++.+++||||+||.++|. . ..+|+.+|..
T Consensus 69 ~vi~~a~~~~-----~--~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~------------~------~~~y~~~K~~ 123 (287)
T 2jl1_A 69 KLLFISGPHY-----D--NTLLIVQHANVVKAARDAGVKHIAYTGYAFAEE------------S------IIPLAHVHLA 123 (287)
T ss_dssp EEEECCCCCS-----C--HHHHHHHHHHHHHHHHHTTCSEEEEEEETTGGG------------C------CSTHHHHHHH
T ss_pred EEEEcCCCCc-----C--chHHHHHHHHHHHHHHHcCCCEEEEECCCCCCC------------C------CCchHHHHHH
Confidence 9999998631 1 167999999999999999999999999998861 0 1379999999
Q ss_pred HHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccc
Q 010005 167 AEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMV 246 (520)
Q Consensus 167 ~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~ 246 (520)
+|++++. .|++++++||+.++|+.....+. .....+.. ..+.|++.++|+|++|+|++++.+++ .+
T Consensus 124 ~E~~~~~----~~~~~~ilrp~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~i~~~Dva~~~~~~~~-----~~ 189 (287)
T 2jl1_A 124 TEYAIRT----TNIPYTFLRNALYTDFFVNEGLR---ASTESGAI--VTNAGSGIVNSVTRNELALAAATVLT-----EE 189 (287)
T ss_dssp HHHHHHH----TTCCEEEEEECCBHHHHSSGGGH---HHHHHTEE--EESCTTCCBCCBCHHHHHHHHHHHHT-----SS
T ss_pred HHHHHHH----cCCCeEEEECCEeccccchhhHH---HHhhCCce--eccCCCCccCccCHHHHHHHHHHHhc-----CC
Confidence 9999975 68999999999998875222222 22233432 35667888999999999999999987 33
Q ss_pred cCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCC-chH---HHHHHh-c
Q 010005 247 SVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSL-SAC---YIVQLA-S 321 (520)
Q Consensus 247 ~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~-~ 321 (520)
...|++||+++++++|+.|+++.+.+.+|.+.+...+|.+.+..... ..+ .+. ... .....+ .
T Consensus 190 ~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~-------~~~-----~~~~~~~~~~~~~~~~~~ 257 (287)
T 2jl1_A 190 GHENKTYNLVSNQPWTFDELAQILSEVSGKKVVHQPVSFEEEKNFLV-------NAG-----VPEPFTEITAAIYDAISK 257 (287)
T ss_dssp SCTTEEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHH-------HTT-----CCHHHHHHHHHHHHHHHT
T ss_pred CCCCcEEEecCCCcCCHHHHHHHHHHHHCCcceEEeCCHHHHHHHHH-------hCC-----CCHHHHHHHHHHHHHHhC
Confidence 45688999999999999999999999999987777788654332111 001 010 000 001111 1
Q ss_pred cceEechHHHHHhcCCCCCCCHHHHHHHHHH
Q 010005 322 RTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQ 352 (520)
Q Consensus 322 ~~~~~d~~ka~~~LG~~p~~sleegi~~~~~ 352 (520)
.....|++|+++.|| |.++++|+++++++
T Consensus 258 ~~~~~~~~~~~~~lG--~~~~l~e~l~~~~~ 286 (287)
T 2jl1_A 258 GEASKTSDDLQKLIG--SLTPLKETVKQALK 286 (287)
T ss_dssp TTTCCCCSHHHHHHS--SCCCHHHHHHHHHT
T ss_pred CCCcCCchHHHHHhC--CCCCHHHHHHHHhc
Confidence 345678999999999 66799999999875
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=283.98 Aligned_cols=266 Identities=17% Similarity=0.099 Sum_probs=210.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC--CC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--AS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~--~D 86 (520)
|+||||||+|+||++++++|++ | ++|+++++ ++.. . .+ +.+|++|++++.+++++ +|
T Consensus 1 m~ilVtGatG~iG~~l~~~L~~-g-~~V~~~~r--------~~~~---~-----~~---~~~Dl~~~~~~~~~~~~~~~d 59 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLSE-R-HEVIKVYN--------SSEI---Q-----GG---YKLDLTDFPRLEDFIIKKRPD 59 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHTT-T-SCEEEEES--------SSCC---T-----TC---EECCTTSHHHHHHHHHHHCCS
T ss_pred CEEEEECCCChhHHHHHHHHhc-C-CeEEEecC--------CCcC---C-----CC---ceeccCCHHHHHHHHHhcCCC
Confidence 5899999999999999999995 8 69999544 3321 0 12 88999999999999986 99
Q ss_pred EEEEcccCCCC---CcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHH
Q 010005 87 TVFYVDATDLN---TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (520)
Q Consensus 87 ~Vih~aa~~~~---~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~s 163 (520)
+|||+|+.... ..++...+++|+.++.+++++|++.++ |+||+||.++|+.... +.+|+. +..|.+.|+.+
T Consensus 60 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~iv~~SS~~~~~~~~~---~~~e~~--~~~~~~~Y~~s 133 (273)
T 2ggs_A 60 VIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDS-YIVHISTDYVFDGEKG---NYKEED--IPNPINYYGLS 133 (273)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC-EEEEEEEGGGSCSSSC---SBCTTS--CCCCSSHHHHH
T ss_pred EEEECCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEecceeEcCCCC---CcCCCC--CCCCCCHHHHH
Confidence 99999997331 346788999999999999999999987 9999999999964432 667776 55778899999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhc
Q 010005 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (520)
Q Consensus 164 K~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~ 243 (520)
|..+|++++. ++++++||+.+|| ...+...+...+..+.++.+.++ .++++|++|+|++++.+++.
T Consensus 134 K~~~e~~~~~------~~~~~iR~~~v~G--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~dva~~i~~~~~~--- 199 (273)
T 2ggs_A 134 KLLGETFALQ------DDSLIIRTSGIFR--NKGFPIYVYKTLKEGKTVFAFKG---YYSPISARKLASAILELLEL--- 199 (273)
T ss_dssp HHHHHHHHCC------TTCEEEEECCCBS--SSSHHHHHHHHHHTTCCEEEESC---EECCCBHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHhC------CCeEEEecccccc--ccHHHHHHHHHHHcCCCEEeecC---CCCceEHHHHHHHHHHHHhc---
Confidence 9999999866 5679999999998 34566667677777877666654 78999999999999999882
Q ss_pred ccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccc
Q 010005 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRT 323 (520)
Q Consensus 244 ~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (520)
.. +++||+++ ++++++|+++.+.+.+|.+.+.+. |.+.. + ..+.. ...
T Consensus 200 ---~~-~g~~~i~~-~~~s~~e~~~~~~~~~g~~~~~~~-~~~~~--------------~-----~~~~~-------~~~ 247 (273)
T 2ggs_A 200 ---RK-TGIIHVAG-ERISRFELALKIKEKFNLPGEVKE-VDEVR--------------G-----WIAKR-------PYD 247 (273)
T ss_dssp ---TC-CEEEECCC-CCEEHHHHHHHHHHHTTCCSCEEE-ESSCT--------------T-----CCSCC-------CSB
T ss_pred ---Cc-CCeEEECC-CcccHHHHHHHHHHHhCCChhhcc-ccccc--------------c-----cccCC-------Ccc
Confidence 22 55999999 999999999999999998755332 11100 0 00000 125
Q ss_pred eEechHHHHHhcCCCC-CCCHHHHH
Q 010005 324 RTFDCIAAQKHIGYSP-VVSLEEGV 347 (520)
Q Consensus 324 ~~~d~~ka~~~LG~~p-~~sleegi 347 (520)
..+|++|++++|||+| .++++|++
T Consensus 248 ~~~d~~k~~~~lG~~p~~~~l~~~~ 272 (273)
T 2ggs_A 248 SSLDSSRARKILSTDFYTLDLDGMV 272 (273)
T ss_dssp CCBCCHHHHHHCSSCCCSCCGGGCC
T ss_pred cccCHHHHHHHhCCCCCCccccccc
Confidence 6789999999999999 67998875
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-35 Score=311.36 Aligned_cols=316 Identities=15% Similarity=0.067 Sum_probs=229.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC--------CCC-------CCCCCCCcEEEEec
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS--------LLP-------DSLSSGRAEYHQVD 71 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~--------~l~-------~~~~~~~v~~~~~D 71 (520)
.+|+|||||||||||+++++.|+++| ++|++++ |+.... .+. ......+++++.+|
T Consensus 149 ~~~~VLVTGatG~iG~~l~~~L~~~g-~~V~~l~--------R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~D 219 (508)
T 4f6l_B 149 PLGNTLLTGATGFLGAYLIEALQGYS-HRIYCFI--------RADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGD 219 (508)
T ss_dssp CCEEEEESCTTSHHHHHHHHHTBTTE-EEEEEEE--------ESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEB
T ss_pred CCCeEEEECCccchHHHHHHHHHhcC-CEEEEEE--------CCCChHHHHHHHHHHHHHhcccccchhccCceEEEecC
Confidence 35899999999999999999998889 6999954 433200 000 00113579999999
Q ss_pred CCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccC---CCCCCCCCC
Q 010005 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDG---SHDIHNGDE 148 (520)
Q Consensus 72 l~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~---~~~~~~~~E 148 (520)
+.|++.+. +..++|+|||+|+......++...+++|+.++.+++++|++ ++++|||+||.++ |.. .....+.+|
T Consensus 220 l~d~~~l~-~~~~~D~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~-~~~~~v~iSS~~v-G~~~~~~~~~~~~~E 296 (508)
T 4f6l_B 220 FECMDDVV-LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISV-GTYFDIDTEDVTFSE 296 (508)
T ss_dssp TTBCSSCC-CSSCCSEEEECCCC--------CCHHHHHHHHHHHHHHHHT-TTCEEEEEEESCT-TSEECTTCSCCEECT
T ss_pred CcccccCC-CccCCCEEEECCceecCCCCHHHHhhhHHHHHHHHHHHHHh-CCCcEEEeCChhh-ccCCccCCcCccccc
Confidence 99977777 67789999999998655677888999999999999999999 7789999999999 432 223346677
Q ss_pred CccC-CCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCc---------hHHHHHHhcCCCceEEecCC
Q 010005 149 TLTC-CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQL---------VPLLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 149 ~~~~-~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~---------~~~l~~~~~~g~~~~i~g~g 218 (520)
+++. +..|.+.|+.+|..+|++++.+.+ .|++++++||+.|||++.... ++.++.....++.+.. ++|
T Consensus 297 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~g 374 (508)
T 4f6l_B 297 ADVYKGQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGV-SMA 374 (508)
T ss_dssp TCSCSSBCCCSHHHHHHHHHHHHHHHHHH-TTCEEEEEEECCEESCSSSCCCCTTCTTCHHHHHHHHHTTCSEEET-TGG
T ss_pred ccccccccCCCcHHHHHHHHHHHHHHHHH-cCCCEEEEecceeccCCCCCcccCCcchHHHHHHHHHHHHcCCCCC-Ccc
Confidence 7643 235789999999999999999865 799999999999999976543 6677777777775433 457
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHH
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWI 298 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~ 298 (520)
++.++|+|++|+|++++.+++ .+. .+++||+++++++++.|+++.+.+.. .+.++.|.|...
T Consensus 375 ~~~~~~v~v~DvA~ai~~~~~-----~~~-~~~~~nl~~~~~~s~~el~~~i~~~~---~~~~~~~~w~~~--------- 436 (508)
T 4f6l_B 375 EMPVDFSFVDTTARQIVALAQ-----VNT-PQIIYHVLSPNKMPVKSLLECVKRKE---IELVSDESFNEI--------- 436 (508)
T ss_dssp GSEEECEEHHHHHHHHHHHTT-----BCC-SCSEEEESCSCEEEHHHHHHHHHSSC---CEEECHHHHHHH---------
T ss_pred CceEEEEcHHHHHHHHHHHHh-----CCC-CCCEEEeCCCCCCCHHHHHHHHHHcC---CcccCHHHHHHH---------
Confidence 889999999999999999887 233 78899999999999999999999865 233333333211
Q ss_pred HHHhcccccCCCCchHHHH-HHhccceEechHHHH---HhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 299 HEKLGLRTYNHSLSACYIV-QLASRTRTFDCIAAQ---KHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~ka~---~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
+... ..+++..... ........+|+++.. +.+||++....++.++++++++++...
T Consensus 437 --l~~~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~~~~~~~ 496 (508)
T 4f6l_B 437 --LQKQ---DMYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFN 496 (508)
T ss_dssp --HHTT---CCHHHHHHHHTGGGSEECEECCHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHC
T ss_pred --HHhc---CCccchhcccccccCcceecchHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 1110 0000000000 112235677887766 446999886668899999999988754
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=283.67 Aligned_cols=279 Identities=14% Similarity=0.107 Sum_probs=203.5
Q ss_pred eEEEEcCCChhHHHHHHHHHhc--CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCE
Q 010005 10 TCVVLNGRGFVGRSLVLRLLEL--GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~--g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~ 87 (520)
+||||||+||||+++++.|+++ | ++|++++ |++.+. . .+...+++++.+|+.|++++.++++++|+
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g-~~V~~~~--------r~~~~~--~-~~~~~~~~~~~~D~~d~~~~~~~~~~~d~ 68 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPA-SQIVAIV--------RNPAKA--Q-ALAAQGITVRQADYGDEAALTSALQGVEK 68 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCG-GGEEEEE--------SCTTTC--H-HHHHTTCEEEECCTTCHHHHHHHTTTCSE
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCC-ceEEEEE--------cChHhh--h-hhhcCCCeEEEcCCCCHHHHHHHHhCCCE
Confidence 5899999999999999999998 8 6999954 433211 0 11124688999999999999999999999
Q ss_pred EEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHH
Q 010005 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQA 167 (520)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~ 167 (520)
|||+|+... ..|+.++.+++++|++.|++||||+||.++|. . ..+|+.+|..+
T Consensus 69 vi~~a~~~~---------~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~------------~------~~~y~~sK~~~ 121 (286)
T 2zcu_A 69 LLLISSSEV---------GQRAPQHRNVINAAKAAGVKFIAYTSLLHADT------------S------PLGLADEHIET 121 (286)
T ss_dssp EEECC-----------------CHHHHHHHHHHHHTCCEEEEEEETTTTT------------C------CSTTHHHHHHH
T ss_pred EEEeCCCCc---------hHHHHHHHHHHHHHHHcCCCEEEEECCCCCCC------------C------cchhHHHHHHH
Confidence 999998521 25899999999999999999999999998861 0 14799999999
Q ss_pred HHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhccccc
Q 010005 168 EALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247 (520)
Q Consensus 168 E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~ 247 (520)
|++++. .|++++++||+.++|+.. .. +......+ .+ ..++|++.++|+|++|+|++++.+++ .+.
T Consensus 122 e~~~~~----~~~~~~ilrp~~~~~~~~-~~---~~~~~~~~-~~-~~~~~~~~~~~i~~~Dva~~~~~~~~-----~~~ 186 (286)
T 2zcu_A 122 EKMLAD----SGIVYTLLRNGWYSENYL-AS---APAALEHG-VF-IGAAGDGKIASATRADYAAAAARVIS-----EAG 186 (286)
T ss_dssp HHHHHH----HCSEEEEEEECCBHHHHH-TT---HHHHHHHT-EE-EESCTTCCBCCBCHHHHHHHHHHHHH-----SSS
T ss_pred HHHHHH----cCCCeEEEeChHHhhhhH-HH---hHHhhcCC-ce-eccCCCCccccccHHHHHHHHHHHhc-----CCC
Confidence 999976 589999999987766532 11 22222233 33 36678889999999999999999998 334
Q ss_pred CCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCC-ch---HHHHHHh-cc
Q 010005 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSL-SA---CYIVQLA-SR 322 (520)
Q Consensus 248 ~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~-~~ 322 (520)
..|++||+++++++|+.|+++.+.+.+|.+.+...+|.+....... ..+ .+. .. ......+ ..
T Consensus 187 ~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~-------~~~-----~~~~~~~~~~~~~~~~~~~ 254 (286)
T 2zcu_A 187 HEGKVYELAGDSAWTLTQLAAELTKQSGKQVTYQNLSEADFAAALK-------SVG-----LPDGLADMLADSDVGASKG 254 (286)
T ss_dssp CTTCEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHT-------TSS-----CCHHHHHHHHHHHHHHHTT
T ss_pred CCCceEEEeCCCcCCHHHHHHHHHHHHCCCCceeeCCHHHHHHHHH-------HcC-----CCHHHHHHHHHHHHHHhCC
Confidence 5788999999999999999999999999987777788664332110 000 000 00 0011111 12
Q ss_pred ceEechHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 010005 323 TRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFS 355 (520)
Q Consensus 323 ~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~ 355 (520)
....|++|+++.|||.| ++++|+++++++||.
T Consensus 255 ~~~~~~~~~~~~lg~~~-~~~~e~l~~~~~~~~ 286 (286)
T 2zcu_A 255 GLFDDSKTLSKLIGHPT-TTLAESVSHLFNVNN 286 (286)
T ss_dssp TTCCCCCHHHHHHTSCC-CCHHHHHHGGGC---
T ss_pred CCccCchHHHHHhCcCC-CCHHHHHHHHHhhcC
Confidence 35668999999999755 699999999998873
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=270.44 Aligned_cols=224 Identities=17% Similarity=0.152 Sum_probs=175.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCE
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~ 87 (520)
||+||||||+||||++++++|+++| ++|++ +.|++.+. .. ...+++++.+|+.|.+++.++++++|+
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g-~~V~~--------~~r~~~~~--~~--~~~~~~~~~~Dl~d~~~~~~~~~~~d~ 70 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRG-FEVTA--------VVRHPEKI--KI--ENEHLKVKKADVSSLDEVCEVCKGADA 70 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTT-CEEEE--------ECSCGGGC--CC--CCTTEEEECCCTTCHHHHHHHHTTCSE
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCC-CEEEE--------EEcCcccc--hh--ccCceEEEEecCCCHHHHHHHhcCCCE
Confidence 5899999999999999999999999 59999 45544321 11 125789999999999999999999999
Q ss_pred EEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHH
Q 010005 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQA 167 (520)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~ 167 (520)
|||+|+.... ....+++|+.++.+++++|++.+++||||+||.++|+.... ...|+. +..|.+.|+.+|..+
T Consensus 71 vi~~a~~~~~---~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~~~~---~~~~~~--~~~p~~~Y~~sK~~~ 142 (227)
T 3dhn_A 71 VISAFNPGWN---NPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGSLFIAPG---LRLMDS--GEVPENILPGVKALG 142 (227)
T ss_dssp EEECCCC---------CCSHHHHHHHHHHHHHHHTTCSEEEEECCSTTSEEETT---EEGGGT--TCSCGGGHHHHHHHH
T ss_pred EEEeCcCCCC---ChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChhhccCCCC---CccccC--CcchHHHHHHHHHHH
Confidence 9999987422 22378999999999999999999999999999998864432 123333 557889999999999
Q ss_pred HHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhccccc
Q 010005 168 EALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247 (520)
Q Consensus 168 E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~ 247 (520)
|.+++.++++.|++++++||+.+|||++... ....+....+. .++. ++|+|++|+|++++.+++ .+.
T Consensus 143 e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~------~~~~~~~~~~~-~~~~-~~~i~~~Dva~ai~~~l~-----~~~ 209 (227)
T 3dhn_A 143 EFYLNFLMKEKEIDWVFFSPAADMRPGVRTG------RYRLGKDDMIV-DIVG-NSHISVEDYAAAMIDELE-----HPK 209 (227)
T ss_dssp HHHHHTGGGCCSSEEEEEECCSEEESCCCCC------CCEEESSBCCC-CTTS-CCEEEHHHHHHHHHHHHH-----SCC
T ss_pred HHHHHHHhhccCccEEEEeCCcccCCCcccc------ceeecCCCccc-CCCC-CcEEeHHHHHHHHHHHHh-----Ccc
Confidence 9999999877899999999999999986421 11112221222 2233 899999999999999999 567
Q ss_pred CCCceEEEeCCCCcCHHH
Q 010005 248 VAGMAFFITNLEPIKFWD 265 (520)
Q Consensus 248 ~~g~~yni~~~~~~t~~e 265 (520)
..|+.|+++++++.++.+
T Consensus 210 ~~g~~~~~~~~~~~~~~~ 227 (227)
T 3dhn_A 210 HHQERFTIGYLEHHHHHH 227 (227)
T ss_dssp CCSEEEEEECCSCCC---
T ss_pred ccCcEEEEEeehhcccCC
Confidence 889999999999988753
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=299.33 Aligned_cols=272 Identities=19% Similarity=0.160 Sum_probs=205.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhc---CCcEEEEecCCcccccCCCCCCC----CCCCCCC--------------CCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLEL---GKCIVRVTDSTQSLQLDPSESNS----LLPDSLS--------------SGR 64 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~---g~~~V~~~D~~~~~~l~r~~~~~----~l~~~~~--------------~~~ 64 (520)
.++|+||||||+||||++++++|+++ | ++|+++++ +.... .+.+.+. ..+
T Consensus 71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g-~~V~~l~R--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 141 (478)
T 4dqv_A 71 PELRTVLLTGATGFLGRYLVLELLRRLDVD-GRLICLVR--------AESDEDARRRLEKTFDSGDPELLRHFKELAADR 141 (478)
T ss_dssp SCCCEEEEECTTSHHHHHHHHHHHHHSCTT-CEEEEEEC--------SSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhcCCCC-CEEEEEEC--------CCCcHHHHHHHHHHHHhcchhhhhhhhhhccCc
Confidence 45799999999999999999999999 8 59999554 32210 0001111 257
Q ss_pred cEEEEecCC------CHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccccccc
Q 010005 65 AEYHQVDVR------DISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFD 138 (520)
Q Consensus 65 v~~~~~Dl~------d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~ 138 (520)
++++.+|++ |.+.+.++++++|+|||+||.... .++...+++|+.|+.+++++|++.+++||||+||.++|+.
T Consensus 142 v~~v~~Dl~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~-~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS~~v~~~ 220 (478)
T 4dqv_A 142 LEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA-FPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAA 220 (478)
T ss_dssp EEEEECCTTSGGGGCCHHHHHHHHHHCCEEEECCSSCSB-SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEEGGGGTT
T ss_pred eEEEEeECCCcccCCCHHHHHHHHcCCCEEEECccccCC-cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeehhhcCc
Confidence 999999998 667899999999999999998444 6777899999999999999999999999999999999975
Q ss_pred CCCCCCCCCCCccCCCCCC-----------ChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC-------CchH
Q 010005 139 GSHDIHNGDETLTCCWKFQ-----------DLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-------QLVP 200 (520)
Q Consensus 139 ~~~~~~~~~E~~~~~~~p~-----------~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~-------~~~~ 200 (520)
... .+.+|+.+. .|. +.|+.||..+|++++.++++.|++++++||++|||++.. .++.
T Consensus 221 ~~~--~~~~E~~~~--~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~~~~~~~~~ 296 (478)
T 4dqv_A 221 IEP--SAFTEDADI--RVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVT 296 (478)
T ss_dssp SCT--TTCCSSSCH--HHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSSSCCCTTBHHH
T ss_pred cCC--CCcCCcccc--cccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccCCcCCHHHHHH
Confidence 432 356666532 222 459999999999999998777999999999999998541 2455
Q ss_pred HHHHHhcC-CCc-eEEe---cCC---CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC--cCHHHHHHHH
Q 010005 201 LLVNLAKP-GWT-KFII---GSG---ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP--IKFWDFLSII 270 (520)
Q Consensus 201 ~l~~~~~~-g~~-~~i~---g~g---~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~--~t~~el~~~i 270 (520)
.++..... |.. ..+. ++| +..++|+||+|+|++++.++..... .+...+++||++++++ +++.|+++.+
T Consensus 297 ~l~~~~~~~g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~-~~~~~~~~ynv~~~~~~~~s~~el~~~l 375 (478)
T 4dqv_A 297 RMVLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAG-SSLAGFATYHVMNPHDDGIGLDEYVDWL 375 (478)
T ss_dssp HHHHHHHHHCEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC--CCCCSEEEEEESCCCCSSCSHHHHHHHH
T ss_pred HHHHHHHHcCcccccccccccccccccceeeeeeHHHHHHHHHHHHhhccc-CCCCCCceEEecCCCCCCcCHHHHHHHH
Confidence 55544333 321 1111 122 6789999999999999999873211 1345678999999987 9999999999
Q ss_pred HHHcCCCCCcc-cCChHHHHHHHH
Q 010005 271 LEGLGYQRPFI-KLPTGVVWYIIL 293 (520)
Q Consensus 271 ~~~~g~~~~~v-~~p~~~~~~~~~ 293 (520)
.+. |.+.+.+ ++|.|+......
T Consensus 376 ~~~-g~~~~~i~~~~~w~~~l~~~ 398 (478)
T 4dqv_A 376 IEA-GYPIRRIDDFAEWLQRFEAS 398 (478)
T ss_dssp HHT-TCSCEEESSHHHHHHHHHHH
T ss_pred HHc-CCCcccCCCHHHHHHHHHHH
Confidence 995 7776554 566666554443
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-33 Score=270.65 Aligned_cols=237 Identities=16% Similarity=0.123 Sum_probs=193.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCE
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~ 87 (520)
||+||||||+|+||++++++|+++| ++|++ +.|++.+. + ..+++++.+|++|.+++.++++++|+
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~--------~~r~~~~~-~-----~~~~~~~~~Dl~d~~~~~~~~~~~d~ 66 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLA-HEVRL--------SDIVDLGA-A-----EAHEEIVACDLADAQAVHDLVKDCDG 66 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTE-EEEEE--------CCSSCCCC-C-----CTTEEECCCCTTCHHHHHHHHTTCSE
T ss_pred CceEEEECCCCHHHHHHHHHHHhCC-CEEEE--------EeCCCccc-c-----CCCccEEEccCCCHHHHHHHHcCCCE
Confidence 4789999999999999999999999 69999 45544321 1 13678899999999999999999999
Q ss_pred EEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHH
Q 010005 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQA 167 (520)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~ 167 (520)
|||+|+.. ...++...+++|+.++.+++++|++.+++||||+||..+|+.... ..+.+|++ +..|.+.|+.+|..+
T Consensus 67 vi~~a~~~-~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~-~~~~~E~~--~~~~~~~Y~~sK~~~ 142 (267)
T 3ay3_A 67 IIHLGGVS-VERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSNHTIGYYPR-TTRIDTEV--PRRPDSLYGLSKCFG 142 (267)
T ss_dssp EEECCSCC-SCCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEEGGGSTTSBT-TSCBCTTS--CCCCCSHHHHHHHHH
T ss_pred EEECCcCC-CCCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCHHHhCCCCC-CCCCCCCC--CCCCCChHHHHHHHH
Confidence 99999975 335678899999999999999999999999999999999975432 24678887 557889999999999
Q ss_pred HHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhccccc
Q 010005 168 EALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247 (520)
Q Consensus 168 E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~ 247 (520)
|.+++.+..++|++++++||+.+|+.. .+++..++|+|++|+|++++.+++ .+.
T Consensus 143 e~~~~~~~~~~gi~~~~lrp~~v~~~~---------------------~~~~~~~~~~~~~dva~~~~~~~~-----~~~ 196 (267)
T 3ay3_A 143 EDLASLYYHKFDIETLNIRIGSCFPKP---------------------KDARMMATWLSVDDFMRLMKRAFV-----APK 196 (267)
T ss_dssp HHHHHHHHHTTCCCEEEEEECBCSSSC---------------------CSHHHHHHBCCHHHHHHHHHHHHH-----SSC
T ss_pred HHHHHHHHHHcCCCEEEEeceeecCCC---------------------CCCCeeeccccHHHHHHHHHHHHh-----CCC
Confidence 999998877789999999999999421 123456799999999999999988 233
Q ss_pred CCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccceEec
Q 010005 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFD 327 (520)
Q Consensus 248 ~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 327 (520)
..+++||+.+++. ..+.|
T Consensus 197 ~~~~~~~~~~~~~--------------------------------------------------------------~~~~d 214 (267)
T 3ay3_A 197 LGCTVVYGASANT--------------------------------------------------------------ESWWD 214 (267)
T ss_dssp CCEEEEEECCSCS--------------------------------------------------------------SCCBC
T ss_pred CCceeEecCCCcc--------------------------------------------------------------ccccC
Confidence 3356788765321 12347
Q ss_pred hHHHHHhcCCCCCCCHHHHHHHHHH
Q 010005 328 CIAAQKHIGYSPVVSLEEGVSSTIQ 352 (520)
Q Consensus 328 ~~ka~~~LG~~p~~sleegi~~~~~ 352 (520)
..++ +.|||+|+++++++++++.+
T Consensus 215 ~~~~-~~lg~~p~~~~~~~~~~~~~ 238 (267)
T 3ay3_A 215 NDKS-AFLGWVPQDSSEIWREEIEQ 238 (267)
T ss_dssp CGGG-GGGCCCCCCCGGGGHHHHHH
T ss_pred HHHH-HHcCCCCCCCHHHHHHHHHh
Confidence 7788 77999999999999887654
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-33 Score=283.48 Aligned_cols=234 Identities=19% Similarity=0.219 Sum_probs=193.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhc-CCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~-g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
++|+||||||+|+||++++++|+++ |+++|+++++ ++.+. .+...+...+++++.+|++|.+++.+++++
T Consensus 20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r--------~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 91 (344)
T 2gn4_A 20 DNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSR--------DELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEG 91 (344)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEES--------CHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEEC--------ChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhc
Confidence 4689999999999999999999999 9448999544 32210 011111235789999999999999999999
Q ss_pred CCEEEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHH
Q 010005 85 ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (520)
Q Consensus 85 ~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~ 161 (520)
+|+|||+||... ...++...+++|+.|+.+++++|++.+++|||++||..++ .|.+.|+
T Consensus 92 ~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~~~------------------~p~~~Y~ 153 (344)
T 2gn4_A 92 VDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDKAA------------------NPINLYG 153 (344)
T ss_dssp CSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGS------------------SCCSHHH
T ss_pred CCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCccC------------------CCccHHH
Confidence 999999999732 2346778999999999999999999999999999997664 3467999
Q ss_pred HHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCC-ceEEecCCCcccccccHHHHHHHHHHH
Q 010005 162 DLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGW-TKFIIGSGENMSDFTYVENVAHAHVCA 237 (520)
Q Consensus 162 ~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~-~~~i~g~g~~~~~~i~v~Dva~ai~~~ 237 (520)
.||+.+|.+++.++.+ .|++++++||+++|||+. .+++.+.+.+..|+ ++.+ .+++..++|+|++|+|++++.+
T Consensus 154 ~sK~~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~-~~i~~~~~~~~~g~~~~~i-~~~~~~r~~i~v~D~a~~v~~~ 231 (344)
T 2gn4_A 154 ATKLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRG-SVVPFFKKLVQNKASEIPI-TDIRMTRFWITLDEGVSFVLKS 231 (344)
T ss_dssp HHHHHHHHHHHHGGGCCCSSCCEEEEECCCEETTCTT-SHHHHHHHHHHHTCCCEEE-SCTTCEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEEeccEECCCC-CHHHHHHHHHHcCCCceEE-eCCCeEEeeEEHHHHHHHHHHH
Confidence 9999999999998753 689999999999999975 57788888888887 6555 4788889999999999999999
Q ss_pred HHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcC
Q 010005 238 AEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLG 275 (520)
Q Consensus 238 ~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g 275 (520)
++ ....|++|+++++ ++++.|+++.+.+.++
T Consensus 232 l~------~~~~g~~~~~~~~-~~s~~el~~~i~~~~~ 262 (344)
T 2gn4_A 232 LK------RMHGGEIFVPKIP-SMKMTDLAKALAPNTP 262 (344)
T ss_dssp HH------HCCSSCEEEECCC-EEEHHHHHHHHCTTCC
T ss_pred Hh------hccCCCEEecCCC-cEEHHHHHHHHHHhCC
Confidence 98 2346789998875 6999999999987553
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-33 Score=281.64 Aligned_cols=300 Identities=11% Similarity=0.018 Sum_probs=209.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC--CC--CCCCCCCCcEEEEecCCCHHHHHH
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS--LL--PDSLSSGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~--~l--~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (520)
+|++|+|||||||||||+++++.|+++| ++|++++ |++... .. ...+...+++++.+|+.|.+++.+
T Consensus 7 ~M~~~~IlVtGatG~iG~~l~~~L~~~g-~~V~~l~--------R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~ 77 (346)
T 3i6i_A 7 PSPKGRVLIAGATGFIGQFVATASLDAH-RPTYILA--------RPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEK 77 (346)
T ss_dssp ----CCEEEECTTSHHHHHHHHHHHHTT-CCEEEEE--------CSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHH
T ss_pred CCCCCeEEEECCCcHHHHHHHHHHHHCC-CCEEEEE--------CCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHH
Confidence 3456899999999999999999999999 5999954 433110 00 001123578999999999999999
Q ss_pred HHc--CCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCC-CCEEEEeecccccccCCCCCCCCCCCccCCCCCC
Q 010005 81 VLE--GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQ 157 (520)
Q Consensus 81 ~l~--~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-vkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~ 157 (520)
+++ ++|+|||+|+. .|+.++.+++++|++.| ++|||+ | +||. ..+|+. +..|.
T Consensus 78 ~~~~~~~d~Vi~~a~~------------~n~~~~~~l~~aa~~~g~v~~~v~-S---~~g~------~~~e~~--~~~p~ 133 (346)
T 3i6i_A 78 ILKEHEIDIVVSTVGG------------ESILDQIALVKAMKAVGTIKRFLP-S---EFGH------DVNRAD--PVEPG 133 (346)
T ss_dssp HHHHTTCCEEEECCCG------------GGGGGHHHHHHHHHHHCCCSEEEC-S---CCSS------CTTTCC--CCTTH
T ss_pred HHhhCCCCEEEECCch------------hhHHHHHHHHHHHHHcCCceEEee-c---ccCC------CCCccC--cCCCc
Confidence 999 99999999985 38999999999999999 999996 3 4542 234544 45677
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHH
Q 010005 158 DLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCA 237 (520)
Q Consensus 158 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~ 237 (520)
+.|+.+|..+|++++. .|++++++||+.+||........... ....+..+.++++|++.++|+|++|+|++++.+
T Consensus 134 ~~y~~sK~~~e~~l~~----~g~~~tivrpg~~~g~~~~~~~~~~~-~~~~~~~~~~~g~g~~~~~~i~~~Dva~~~~~~ 208 (346)
T 3i6i_A 134 LNMYREKRRVRQLVEE----SGIPFTYICCNSIASWPYYNNIHPSE-VLPPTDFFQIYGDGNVKAYFVAGTDIGKFTMKT 208 (346)
T ss_dssp HHHHHHHHHHHHHHHH----TTCCBEEEECCEESSCCCSCC------CCCCSSCEEEETTSCCCEEEECHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH----cCCCEEEEEecccccccCcccccccc-ccCCCceEEEccCCCceEEecCHHHHHHHHHHH
Confidence 8999999999999987 58999999999999976544332221 223455678999999999999999999999999
Q ss_pred HHhhhcccccCCCceEEEeC-CCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCC---ch
Q 010005 238 AEALDSRMVSVAGMAFFITN-LEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSL---SA 313 (520)
Q Consensus 238 ~~~~~~~~~~~~g~~yni~~-~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 313 (520)
++ .+...+++||+++ ++.+|+.|+++.+.+.+|.+.+...+|...+..... .. ..|. +.
T Consensus 209 l~-----~~~~~~~~~~i~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~---------~~---~~p~~~~~~ 271 (346)
T 3i6i_A 209 VD-----DVRTLNKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVTEDDLLAAAG---------EN---IIPQSVVAA 271 (346)
T ss_dssp TT-----CGGGTTEEEECCCGGGEECHHHHHHHHHHHHTSCCCEEEECHHHHHHHHH---------TC---CTTHHHHHH
T ss_pred Hh-----CccccCeEEEEeCCCCCCCHHHHHHHHHHHHCCCCceEecCHHHHHHHHh---------cC---CChhhhHHH
Confidence 88 3455688999985 488999999999999999998777777654321110 00 0000 00
Q ss_pred HHHHHHh-ccceEech-----HHHHHhc-CCCCCCCHHHHHHHHHHHHHhhhhc
Q 010005 314 CYIVQLA-SRTRTFDC-----IAAQKHI-GYSPVVSLEEGVSSTIQSFSHLARD 360 (520)
Q Consensus 314 ~~~~~~~-~~~~~~d~-----~ka~~~L-G~~p~~sleegi~~~~~~~~~~~~~ 360 (520)
....... .....++. .++.+.+ +++|+ +++|.++++++|++++...
T Consensus 272 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~t-~~~e~l~~~~~~~~~~~~~ 324 (346)
T 3i6i_A 272 FTHDIFIKGCQVNFSIDGPEDVEVTTLYPEDSFR-TVEECFGEYIVKMEEKQPT 324 (346)
T ss_dssp HHHHHHTTCTTTSSCCCSTTEEEHHHHSTTCCCC-CHHHHHHHHHCC-------
T ss_pred HHHHHhccCCCcccccCCCCcccHHHhCCCCCcC-cHHHHHHHHHHHhhccccc
Confidence 0000000 01111222 2244444 77885 9999999999999886543
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=99.98 E-value=8.8e-33 Score=283.89 Aligned_cols=213 Identities=12% Similarity=0.087 Sum_probs=186.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCEE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~V 88 (520)
||||||||+||||++++++|+++|+.+|+++| |+ .|.+++.++++++|+|
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d--------~~----------------------~d~~~l~~~~~~~d~V 50 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVH--------RQ----------------------TKEEELESALLKADFI 50 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECC--------TT----------------------CCHHHHHHHHHHCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEC--------CC----------------------CCHHHHHHHhccCCEE
Confidence 68999999999999999999999943788733 21 6888999999999999
Q ss_pred EEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHH
Q 010005 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQA 167 (520)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~ 167 (520)
||+|+.... .++...+++|+.++.+++++|++.+++ ||||+||..+|+ .+.|+.+|..+
T Consensus 51 ih~a~~~~~-~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~-------------------~~~Y~~sK~~~ 110 (369)
T 3st7_A 51 VHLAGVNRP-EHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQ-------------------DNPYGESKLQG 110 (369)
T ss_dssp EECCCSBCT-TCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGS-------------------CSHHHHHHHHH
T ss_pred EECCcCCCC-CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcC-------------------CCCchHHHHHH
Confidence 999998433 467788999999999999999999987 999999999983 47899999999
Q ss_pred HHHHHHhcCCCCceEEEEecCccccCCCC----CchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhc
Q 010005 168 EALVLFANNIDGLLTCALRPSNVFGPGDT----QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (520)
Q Consensus 168 E~~~~~~~~~~gi~~~ilRp~~vyGp~~~----~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~ 243 (520)
|++++.++++.|++++++||+++|||+.. .+++.++..+..+.++.+ +++++.++|+|++|+|++++.+++
T Consensus 111 E~~~~~~~~~~g~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~v~Dva~~~~~~l~---- 185 (369)
T 3st7_A 111 EQLLREYAEEYGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQV-NDRNVELTLNYVDDIVAEIKRAIE---- 185 (369)
T ss_dssp HHHHHHHHHHHCCCEEEEEECEEECTTCCTTSSCHHHHHHHHHHTTCCCCC-SCTTCEEEEEEHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHhCCCEEEEECCceeCCCCCCCcchHHHHHHHHHHcCCCeEe-cCCCeEEEEEEHHHHHHHHHHHHh----
Confidence 99999998878999999999999999764 578888888888887554 688999999999999999999998
Q ss_pred ccccCC-CceEEEeCCCCcCHHHHHHHHHHHcCCC
Q 010005 244 RMVSVA-GMAFFITNLEPIKFWDFLSIILEGLGYQ 277 (520)
Q Consensus 244 ~~~~~~-g~~yni~~~~~~t~~el~~~i~~~~g~~ 277 (520)
.+... +++||+++++++|+.|+++.+.+.+|.+
T Consensus 186 -~~~~~~~~~~~i~~~~~~s~~e~~~~~~~~~g~~ 219 (369)
T 3st7_A 186 -GTPTIENGVPTVPNVFKVTLGEIVDLLYKFKQSR 219 (369)
T ss_dssp -TCCCEETTEECCSCCEEEEHHHHHHHHHHHHHHH
T ss_pred -CCcccCCceEEeCCCCceeHHHHHHHHHHHhCCC
Confidence 23332 7899999999999999999999998865
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-31 Score=263.25 Aligned_cols=225 Identities=16% Similarity=0.143 Sum_probs=189.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
++|+||||||+|+||+++++.|+++| ++|+++|+ ++.+. ...+++++.+|++|.+++.++++++|
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G-~~V~~~~r--------~~~~~------~~~~~~~~~~Dl~d~~~~~~~~~~~D 66 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMA-EILRLADL--------SPLDP------AGPNEECVQCDLADANAVNAMVAGCD 66 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGE-EEEEEEES--------SCCCC------CCTTEEEEECCTTCHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcC-CEEEEEec--------CCccc------cCCCCEEEEcCCCCHHHHHHHHcCCC
Confidence 45789999999999999999999999 59999554 33211 13578999999999999999999999
Q ss_pred EEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHH
Q 010005 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQ 166 (520)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~ 166 (520)
+|||+||.. ...+++.++++|+.|+.+++++|++.+++|+||+||.++||.... ..+.+|+. +..|.+.|+.||..
T Consensus 67 ~vi~~Ag~~-~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~g~~~~-~~~~~e~~--~~~~~~~Y~~sK~~ 142 (267)
T 3rft_A 67 GIVHLGGIS-VEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYPQ-TERLGPDV--PARPDGLYGVSKCF 142 (267)
T ss_dssp EEEECCSCC-SCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGTTSBT-TSCBCTTS--CCCCCSHHHHHHHH
T ss_pred EEEECCCCc-CcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcchHHhCCCCC-CCCCCCCC--CCCCCChHHHHHHH
Confidence 999999983 446788999999999999999999999999999999999975433 33677776 56788999999999
Q ss_pred HHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccc
Q 010005 167 AEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMV 246 (520)
Q Consensus 167 ~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~ 246 (520)
+|.+++.+++++|++++++||+.+||+ +++++..++|+|++|+++++..+++ .+
T Consensus 143 ~e~~~~~~a~~~g~~~~~vr~~~v~~~---------------------~~~~~~~~~~~~~~d~a~~~~~~~~-----~~ 196 (267)
T 3rft_A 143 GENLARMYFDKFGQETALVRIGSCTPE---------------------PNNYRMLSTWFSHDDFVSLIEAVFR-----AP 196 (267)
T ss_dssp HHHHHHHHHHHHCCCEEEEEECBCSSS---------------------CCSTTHHHHBCCHHHHHHHHHHHHH-----CS
T ss_pred HHHHHHHHHHHhCCeEEEEEeecccCC---------------------CCCCCceeeEEcHHHHHHHHHHHHh-----CC
Confidence 999999998878999999999999987 2456677899999999999999998 34
Q ss_pred cCCCceEEEeCCCCcCHHHHHHHHHHHcCCCC
Q 010005 247 SVAGMAFFITNLEPIKFWDFLSIILEGLGYQR 278 (520)
Q Consensus 247 ~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~ 278 (520)
...+.++++.++++.+++++... +.+|+++
T Consensus 197 ~~~~~~~~~~s~~~~~~~~~~~~--~~~g~~p 226 (267)
T 3rft_A 197 VLGCPVVWGASANDAGWWDNSHL--GFLGWKP 226 (267)
T ss_dssp CCCSCEEEECCCCTTCCBCCGGG--GGGCCCC
T ss_pred CCCceEEEEeCCCCCCcccChhH--HHCCCCC
Confidence 55556899998888888876443 5667654
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=258.24 Aligned_cols=278 Identities=12% Similarity=0.101 Sum_probs=196.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhc-CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~-g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~ 87 (520)
|+||||||+|+||+++++.|.++ | ++|++ +.|++.+. ..+...+++++.+|+.|++++.++++++|+
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g-~~V~~--------~~R~~~~~---~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~ 68 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHI-DHFHI--------GVRNVEKV---PDDWRGKVSVRQLDYFNQESMVEAFKGMDT 68 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTC-TTEEE--------EESSGGGS---CGGGBTTBEEEECCTTCHHHHHHHTTTCSE
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCC-CcEEE--------EECCHHHH---HHhhhCCCEEEEcCCCCHHHHHHHHhCCCE
Confidence 58999999999999999999998 8 59999 44544321 112345799999999999999999999999
Q ss_pred EEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHH
Q 010005 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQA 167 (520)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~ 167 (520)
|||+|+.... ...|+.++.+++++|++.|++||||+||.+. +++.|+ .+...+..+
T Consensus 69 vi~~a~~~~~-------~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~~-----------~~~~~~------~~~~~~~~~ 124 (289)
T 3e48_A 69 VVFIPSIIHP-------SFKRIPEVENLVYAAKQSGVAHIIFIGYYAD-----------QHNNPF------HMSPYFGYA 124 (289)
T ss_dssp EEECCCCCCS-------HHHHHHHHHHHHHHHHHTTCCEEEEEEESCC-----------STTCCS------TTHHHHHHH
T ss_pred EEEeCCCCcc-------chhhHHHHHHHHHHHHHcCCCEEEEEcccCC-----------CCCCCC------ccchhHHHH
Confidence 9999986322 2358999999999999999999999999432 111111 122333456
Q ss_pred HHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhccccc
Q 010005 168 EALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247 (520)
Q Consensus 168 E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~ 247 (520)
|+.+.. .|++++++||+.+||+. ...+......+. ...+.|++.++|+|++|+|++++.+++ .+.
T Consensus 125 e~~~~~----~g~~~~ilrp~~~~~~~----~~~~~~~~~~~~--~~~~~g~~~~~~i~~~Dva~~~~~~l~-----~~~ 189 (289)
T 3e48_A 125 SRLLST----SGIDYTYVRMAMYMDPL----KPYLPELMNMHK--LIYPAGDGRINYITRNDIARGVIAIIK-----NPD 189 (289)
T ss_dssp HHHHHH----HCCEEEEEEECEESTTH----HHHHHHHHHHTE--ECCCCTTCEEEEECHHHHHHHHHHHHH-----CGG
T ss_pred HHHHHH----cCCCEEEEecccccccc----HHHHHHHHHCCC--EecCCCCceeeeEEHHHHHHHHHHHHc-----CCC
Confidence 666654 58999999999999873 222222222332 345678899999999999999999998 344
Q ss_pred CCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccceEec
Q 010005 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFD 327 (520)
Q Consensus 248 ~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 327 (520)
..|++||++ ++.+|+.|+++.+.+.+|.+.....+|...+. .....+.+ ....+..............+
T Consensus 190 ~~g~~~~~~-~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~p~~-~~~~~~~~~~~~~~g~~~~~ 258 (289)
T 3e48_A 190 TWGKRYLLS-GYSYDMKELAAILSEASGTEIKYEPVSLETFA---------EMYDEPKG-FGALLASMYHAGARGLLDQE 258 (289)
T ss_dssp GTTCEEEEC-CEEEEHHHHHHHHHHHHTSCCEECCCCHHHHH---------HHTCCSTT-HHHHHHHHHHHHHTTTTCCC
T ss_pred cCCceEEeC-CCcCCHHHHHHHHHHHHCCceeEEeCCHHHHH---------HHhcCCcc-HHHHHHHHHHHHHCCCcccc
Confidence 458899999 99999999999999999998776677754321 11100000 00000001111122233446
Q ss_pred hHHHHHhcCCCCCCCHHHHHHH
Q 010005 328 CIAAQKHIGYSPVVSLEEGVSS 349 (520)
Q Consensus 328 ~~ka~~~LG~~p~~sleegi~~ 349 (520)
.+..++.+|.+|+ +++|.+++
T Consensus 259 ~~~~~~~~G~~p~-~~~~~~~~ 279 (289)
T 3e48_A 259 SNDFKQLVNDQPQ-TLQSFLQE 279 (289)
T ss_dssp CSHHHHHHSSCCC-CHHHHHHC
T ss_pred CchHHHHhCCCCC-CHHHHHHH
Confidence 6778888999996 88876544
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-31 Score=249.62 Aligned_cols=209 Identities=16% Similarity=0.117 Sum_probs=170.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCC-HHHHHHHHcCCCE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD-ISQIKKVLEGAST 87 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d-~~~l~~~l~~~D~ 87 (520)
|+||||||+|+||+++++.|+++| ++|++++ |++.+ ... ..+++++.+|+.| .+++.++++++|+
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g-~~V~~~~--------R~~~~--~~~---~~~~~~~~~D~~d~~~~~~~~~~~~d~ 66 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTD-YQIYAGA--------RKVEQ--VPQ---YNNVKAVHFDVDWTPEEMAKQLHGMDA 66 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSS-CEEEEEE--------SSGGG--SCC---CTTEEEEECCTTSCHHHHHTTTTTCSE
T ss_pred CeEEEECCCCHHHHHHHHHHHHCC-CEEEEEE--------CCccc--hhh---cCCceEEEecccCCHHHHHHHHcCCCE
Confidence 589999999999999999999999 6999954 44331 111 1579999999999 9999999999999
Q ss_pred EEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHH
Q 010005 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQA 167 (520)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~ 167 (520)
|||+|+... ...+++|+.++.+++++|++.+++||||+||.++++.. +.+| . +..|.+.|+.+|..+
T Consensus 67 vi~~ag~~~-----~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~-----~~~e-~--~~~~~~~Y~~sK~~~ 133 (219)
T 3dqp_A 67 IINVSGSGG-----KSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFSLQPE-----KWIG-A--GFDALKDYYIAKHFA 133 (219)
T ss_dssp EEECCCCTT-----SSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTTTCGG-----GCCS-H--HHHHTHHHHHHHHHH
T ss_pred EEECCcCCC-----CCcEeEeHHHHHHHHHHHHHhCCCEEEEECcccccCCC-----cccc-c--ccccccHHHHHHHHH
Confidence 999999743 23788999999999999999999999999998877432 2334 2 446788999999999
Q ss_pred HHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhccccc
Q 010005 168 EALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247 (520)
Q Consensus 168 E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~ 247 (520)
|++++ ...|++++++||+.+||+..... ... ++..++++|++|+|++++.+++ .+.
T Consensus 134 e~~~~---~~~~i~~~ilrp~~v~g~~~~~~--------------~~~--~~~~~~~i~~~Dva~~i~~~l~-----~~~ 189 (219)
T 3dqp_A 134 DLYLT---KETNLDYTIIQPGALTEEEATGL--------------IDI--NDEVSASNTIGDVADTIKELVM-----TDH 189 (219)
T ss_dssp HHHHH---HSCCCEEEEEEECSEECSCCCSE--------------EEE--SSSCCCCEEHHHHHHHHHHHHT-----CGG
T ss_pred HHHHH---hccCCcEEEEeCceEecCCCCCc--------------ccc--CCCcCCcccHHHHHHHHHHHHh-----Ccc
Confidence 99996 24799999999999999864321 112 3678899999999999999998 355
Q ss_pred CCCceEEEeCCCCcCHHHHHHH
Q 010005 248 VAGMAFFITNLEPIKFWDFLSI 269 (520)
Q Consensus 248 ~~g~~yni~~~~~~t~~el~~~ 269 (520)
..|++||+++++ .+++|+.+.
T Consensus 190 ~~g~~~~i~~g~-~~~~e~~~~ 210 (219)
T 3dqp_A 190 SIGKVISMHNGK-TAIKEALES 210 (219)
T ss_dssp GTTEEEEEEECS-EEHHHHHHT
T ss_pred ccCcEEEeCCCC-ccHHHHHHH
Confidence 668999998864 899887753
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.8e-30 Score=253.40 Aligned_cols=242 Identities=18% Similarity=0.122 Sum_probs=184.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCE
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~ 87 (520)
+|+||||||+|+||++++++|+++|.++|+++ .|++.+... ..+...+++++.+|+.|++++.++++++|+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~--------~R~~~~~~~-~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~ 75 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVV--------TRNPRKKAA-KELRLQGAEVVQGDQDDQVIMELALNGAYA 75 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEE--------ESCTTSHHH-HHHHHTTCEEEECCTTCHHHHHHHHTTCSE
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEE--------EcCCCCHHH-HHHHHCCCEEEEecCCCHHHHHHHHhcCCE
Confidence 58999999999999999999999983499994 444331100 011124689999999999999999999999
Q ss_pred EEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHH
Q 010005 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQA 167 (520)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~ 167 (520)
|||+++... ....+.|+.++.+++++|++.|++||||+||..+|+.. ++ .+...|+.+|..+
T Consensus 76 vi~~a~~~~-----~~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~~~~~~~--------~~-----~~~~~y~~sK~~~ 137 (299)
T 2wm3_A 76 TFIVTNYWE-----SCSQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLT--------AG-----RLAAAHFDGKGEV 137 (299)
T ss_dssp EEECCCHHH-----HTCHHHHHHHHHHHHHHHHHHTCSEEEECCCCCHHHHT--------TT-----SCCCHHHHHHHHH
T ss_pred EEEeCCCCc-----cccchHHHHHHHHHHHHHHHcCCCEEEEEcCccccccC--------CC-----cccCchhhHHHHH
Confidence 999997511 11245789999999999999999999999998887421 11 2357899999999
Q ss_pred HHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCce-EEecCCCcccccccHHHHHHHHHHHHHhhhcccc
Q 010005 168 EALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTK-FIIGSGENMSDFTYVENVAHAHVCAAEALDSRMV 246 (520)
Q Consensus 168 E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~-~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~ 246 (520)
|++++. .|++++++||+.+||+....+.+ .....|+.. ...+.|+..++|+|++|+|++++.+++.. .
T Consensus 138 e~~~~~----~gi~~~ilrp~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~----~ 206 (299)
T 2wm3_A 138 EEYFRD----IGVPMTSVRLPCYFENLLSHFLP---QKAPDGKSYLLSLPTGDVPMDGMSVSDLGPVVLSLLKMP----E 206 (299)
T ss_dssp HHHHHH----HTCCEEEEECCEEGGGGGTTTCC---EECTTSSSEEECCCCTTSCEEEECGGGHHHHHHHHHHSH----H
T ss_pred HHHHHH----CCCCEEEEeecHHhhhchhhcCC---cccCCCCEEEEEecCCCCccceecHHHHHHHHHHHHcCh----h
Confidence 999986 48999999999999975332111 112234321 22334778899999999999999998721 1
Q ss_pred cCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHH
Q 010005 247 SVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVV 288 (520)
Q Consensus 247 ~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~ 288 (520)
...|++|++++ +.+|+.|+++.+.+.+|.+.+...+|.+..
T Consensus 207 ~~~g~~~~~~g-~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~ 247 (299)
T 2wm3_A 207 KYVGQNIGLST-CRHTAEEYAALLTKHTRKVVHDAKMTPEDY 247 (299)
T ss_dssp HHTTCEEECCS-EEECHHHHHHHHHHHHSSCEEECCCCTHHH
T ss_pred hhCCeEEEeee-ccCCHHHHHHHHHHHHCCCceeEecCHHHH
Confidence 24678999987 679999999999999999877777886654
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-30 Score=246.19 Aligned_cols=216 Identities=13% Similarity=0.064 Sum_probs=173.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCc-EEEEecCCCHHHHHHHHcC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRA-EYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v-~~~~~Dl~d~~~l~~~l~~ 84 (520)
.++|+||||||+|+||++++++|+++| ++|++++ |++.+ . +.+...++ +++.+|++ +++.+++++
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G-~~V~~~~--------R~~~~--~-~~~~~~~~~~~~~~Dl~--~~~~~~~~~ 84 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKG-HEPVAMV--------RNEEQ--G-PELRERGASDIVVANLE--EDFSHAFAS 84 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE--------SSGGG--H-HHHHHTTCSEEEECCTT--SCCGGGGTT
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCC-CeEEEEE--------CChHH--H-HHHHhCCCceEEEcccH--HHHHHHHcC
Confidence 457999999999999999999999999 5999954 44331 1 11112367 99999998 678888999
Q ss_pred CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHH
Q 010005 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (520)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK 164 (520)
+|+|||+||... ..++...+++|+.++.+++++|++.+++||||+||...+. .+.. + .+.+.|+.+|
T Consensus 85 ~D~vi~~ag~~~-~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~---------~~~~--~-~~~~~Y~~sK 151 (236)
T 3e8x_A 85 IDAVVFAAGSGP-HTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVD---------PDQG--P-MNMRHYLVAK 151 (236)
T ss_dssp CSEEEECCCCCT-TSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTCSC---------GGGS--C-GGGHHHHHHH
T ss_pred CCEEEECCCCCC-CCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCCCC---------CCCC--h-hhhhhHHHHH
Confidence 999999999743 3578899999999999999999999999999999955431 1211 1 4678999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcc
Q 010005 165 AQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSR 244 (520)
Q Consensus 165 ~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~ 244 (520)
..+|++++. .|++++++||+.+||+.... ......++.+.++++|++|+|++++.+++
T Consensus 152 ~~~e~~~~~----~gi~~~~lrpg~v~~~~~~~-------------~~~~~~~~~~~~~~i~~~Dva~~~~~~~~----- 209 (236)
T 3e8x_A 152 RLADDELKR----SSLDYTIVRPGPLSNEESTG-------------KVTVSPHFSEITRSITRHDVAKVIAELVD----- 209 (236)
T ss_dssp HHHHHHHHH----SSSEEEEEEECSEECSCCCS-------------EEEEESSCSCCCCCEEHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHH----CCCCEEEEeCCcccCCCCCC-------------eEEeccCCCcccCcEeHHHHHHHHHHHhc-----
Confidence 999999873 69999999999999986422 23445566778999999999999999988
Q ss_pred cccCCCceEEEeCCCCcCHHHHHHHHH
Q 010005 245 MVSVAGMAFFITNLEPIKFWDFLSIIL 271 (520)
Q Consensus 245 ~~~~~g~~yni~~~~~~t~~el~~~i~ 271 (520)
.+...|++||++++ ++++.|+++.+.
T Consensus 210 ~~~~~g~~~~v~~~-~~~~~e~~~~i~ 235 (236)
T 3e8x_A 210 QQHTIGKTFEVLNG-DTPIAKVVEQLG 235 (236)
T ss_dssp CGGGTTEEEEEEEC-SEEHHHHHHTC-
T ss_pred CccccCCeEEEeCC-CcCHHHHHHHhc
Confidence 34577899999987 599999998764
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-30 Score=265.12 Aligned_cols=237 Identities=16% Similarity=0.119 Sum_probs=179.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEec-CCCHHHHHHHHcCCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD-VRDISQIKKVLEGAS 86 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~D-l~d~~~l~~~l~~~D 86 (520)
+|+|+||||+||||+++++.|+++| ++|++++ |++.+.........++++.+.+| ++|++++.++++++|
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~--------R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d 75 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVG-HHVRAQV--------HSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAH 75 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTT-CCEEEEE--------SCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEE--------CCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCC
Confidence 5899999999999999999999999 5999944 44331100000112368899999 999999999999999
Q ss_pred EEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCC-CCEEEEeeccc--ccccCCCCCCCCCCCccCCCCCCChHHHH
Q 010005 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTAD--VVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (520)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-vkr~V~~SS~~--vyg~~~~~~~~~~E~~~~~~~p~~~Y~~s 163 (520)
+|||+++... .+.|..+ ++++++|++.| ++||||+||.+ .|+ ..+.+.|+.+
T Consensus 76 ~Vi~~a~~~~--------~~~~~~~-~~l~~aa~~~g~v~~~V~~SS~~~~~~~----------------~~~~~~y~~s 130 (352)
T 1xgk_A 76 LAFINTTSQA--------GDEIAIG-KDLADAAKRAGTIQHYIYSSMPDHSLYG----------------PWPAVPMWAP 130 (352)
T ss_dssp EEEECCCSTT--------SCHHHHH-HHHHHHHHHHSCCSEEEEEECCCGGGTS----------------SCCCCTTTHH
T ss_pred EEEEcCCCCC--------cHHHHHH-HHHHHHHHHcCCccEEEEeCCccccccC----------------CCCCccHHHH
Confidence 9999987521 1347776 99999999999 99999999986 331 1234679999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHH--hcCCCce-EEecCCCcccccccH-HHHHHHHHHHHH
Q 010005 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNL--AKPGWTK-FIIGSGENMSDFTYV-ENVAHAHVCAAE 239 (520)
Q Consensus 164 K~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~--~~~g~~~-~i~g~g~~~~~~i~v-~Dva~ai~~~~~ 239 (520)
|..+|++++. .|++++++||+ +||++.......++.. ...|... .+++++++.++++|+ +|+|++++.+++
T Consensus 131 K~~~E~~~~~----~gi~~~ivrpg-~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~~Dva~ai~~~l~ 205 (352)
T 1xgk_A 131 KFTVENYVRQ----LGLPSTFVYAG-IYNNNFTSLPYPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFK 205 (352)
T ss_dssp HHHHHHHHHT----SSSCEEEEEEC-EEGGGCBSSSCSSCBEEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCCEEEEecc-eecCCchhcccccccccccCCCceEEeeccCCCCceeeEecHHHHHHHHHHHHh
Confidence 9999999987 38999999976 7898754321111111 1344432 346778899999999 899999999987
Q ss_pred hhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHH
Q 010005 240 ALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGV 287 (520)
Q Consensus 240 ~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~ 287 (520)
.. .....|++||+++ +++|++|+++.+.+.+|.+.+.+++|.+.
T Consensus 206 ~~---~~~~~g~~~~l~~-~~~s~~e~~~~i~~~~G~~~~~~~vp~~~ 249 (352)
T 1xgk_A 206 DG---PQKWNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVPKVE 249 (352)
T ss_dssp HC---HHHHTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECSSCC
T ss_pred CC---chhhCCeEEEEec-CCCCHHHHHHHHHHHHCCCCceEECCHHH
Confidence 21 0123688999996 67999999999999999987777777554
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-29 Score=253.14 Aligned_cols=235 Identities=14% Similarity=0.145 Sum_probs=179.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~-~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
.|+++||||||+|+||++++++|+++| ++|+++ .|++. +......+...+++++.+|+.|++++.+++++
T Consensus 9 ~m~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l--------~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~ 79 (318)
T 2r6j_A 9 GMKSKILIFGGTGYIGNHMVKGSLKLG-HPTYVF--------TRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKK 79 (318)
T ss_dssp CCCCCEEEETTTSTTHHHHHHHHHHTT-CCEEEE--------ECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTT
T ss_pred CCCCeEEEECCCchHHHHHHHHHHHCC-CcEEEE--------ECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcC
Confidence 345689999999999999999999999 599994 44432 10000001234789999999999999999999
Q ss_pred CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCC-CCEEEEeecccccccCCCCCCCCCCCccCCCCC-CChHHH
Q 010005 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF-QDLMCD 162 (520)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-vkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p-~~~Y~~ 162 (520)
+|+|||+++.. ++.++.+++++|++.| ++|||+ | +||.. .+|.. +..| .+.| .
T Consensus 80 ~d~vi~~a~~~------------~~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~------~~~~~--~~~p~~~~y-~ 134 (318)
T 2r6j_A 80 VDVVISALAFP------------QILDQFKILEAIKVAGNIKRFLP-S---DFGVE------EDRIN--ALPPFEALI-E 134 (318)
T ss_dssp CSEEEECCCGG------------GSTTHHHHHHHHHHHCCCCEEEC-S---CCSSC------TTTCC--CCHHHHHHH-H
T ss_pred CCEEEECCchh------------hhHHHHHHHHHHHhcCCCCEEEe-e---ccccC------ccccc--CCCCcchhH-H
Confidence 99999999852 1567899999999998 999985 3 35421 12222 2233 3568 9
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhh
Q 010005 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242 (520)
Q Consensus 163 sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~ 242 (520)
+|..+|++++. .|++++++||+.+++. .++.+......++.+.++++|+..++|+|++|+|++++.+++
T Consensus 135 sK~~~e~~~~~----~~~~~~~lr~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~--- 203 (318)
T 2r6j_A 135 RKRMIRRAIEE----ANIPYTYVSANCFASY----FINYLLRPYDPKDEITVYGTGEAKFAMNYEQDIGLYTIKVAT--- 203 (318)
T ss_dssp HHHHHHHHHHH----TTCCBEEEECCEEHHH----HHHHHHCTTCCCSEEEEETTSCCEEEEECHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHh----cCCCeEEEEcceehhh----hhhhhccccCCCCceEEecCCCceeeEeeHHHHHHHHHHHhc---
Confidence 99999999976 5899999999887754 334444333455666788999999999999999999998887
Q ss_pred cccccCCCceEEEeC-CCCcCHHHHHHHHHHHcCCCCCcccCChHH
Q 010005 243 SRMVSVAGMAFFITN-LEPIKFWDFLSIILEGLGYQRPFIKLPTGV 287 (520)
Q Consensus 243 ~~~~~~~g~~yni~~-~~~~t~~el~~~i~~~~g~~~~~v~~p~~~ 287 (520)
.+...++.|++++ ++.+|+.|+++.+.+.+|.+.+...+|...
T Consensus 204 --~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~ 247 (318)
T 2r6j_A 204 --DPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVPEEE 247 (318)
T ss_dssp --CGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTCCCEEEEECHHH
T ss_pred --CccccCeEEEecCCCCccCHHHHHHHHHHHhCCCCceeecCHHH
Confidence 2344578888876 478999999999999999987777787654
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-29 Score=239.16 Aligned_cols=220 Identities=13% Similarity=-0.003 Sum_probs=162.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCEE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~V 88 (520)
||||||||+|+||++++++|+++| ++|+++ .|++.+ .. .+...+++++.+|++|.++ +.++++|+|
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g-~~V~~~--------~R~~~~--~~-~~~~~~~~~~~~D~~d~~~--~~~~~~d~v 66 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRG-HEVLAV--------VRDPQK--AA-DRLGATVATLVKEPLVLTE--ADLDSVDAV 66 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEE--------ESCHHH--HH-HHTCTTSEEEECCGGGCCH--HHHTTCSEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCC-CEEEEE--------Eecccc--cc-cccCCCceEEecccccccH--hhcccCCEE
Confidence 589999999999999999999999 599994 444331 11 1123578999999999887 888999999
Q ss_pred EEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCC-CCCCCCccCCCCCCChHHHHHHHH
Q 010005 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDI-HNGDETLTCCWKFQDLMCDLKAQA 167 (520)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~-~~~~E~~~~~~~p~~~Y~~sK~~~ 167 (520)
||+|+.... ....+.|+.++.+++++|++.| +|+|++||.++++...... ...+|+. ...|.+.|+.+|..+
T Consensus 67 i~~ag~~~~----~~~~~~n~~~~~~l~~a~~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~~~--~~~~~~~y~~sK~~~ 139 (224)
T 3h2s_A 67 VDALSVPWG----SGRGYLHLDFATHLVSLLRNSD-TLAVFILGSASLAMPGADHPMILDFPE--SAASQPWYDGALYQY 139 (224)
T ss_dssp EECCCCCTT----SSCTHHHHHHHHHHHHTCTTCC-CEEEEECCGGGSBCTTCSSCGGGGCCG--GGGGSTTHHHHHHHH
T ss_pred EECCccCCC----cchhhHHHHHHHHHHHHHHHcC-CcEEEEecceeeccCCCCccccccCCC--CCccchhhHHHHHHH
Confidence 999997411 1235789999999999999999 8999999987765333211 1223332 445688999999999
Q ss_pred HHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhccccc
Q 010005 168 EALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247 (520)
Q Consensus 168 E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~ 247 (520)
|.+ ..+.++.|++++++||+.+|||+..... ......+ ..+...++++|++|+|++++.+++ .+.
T Consensus 140 e~~-~~~~~~~~i~~~ivrp~~v~g~~~~~~~------~~~~~~~---~~~~~~~~~i~~~DvA~~~~~~l~-----~~~ 204 (224)
T 3h2s_A 140 YEY-QFLQMNANVNWIGISPSEAFPSGPATSY------VAGKDTL---LVGEDGQSHITTGNMALAILDQLE-----HPT 204 (224)
T ss_dssp HHH-HHHTTCTTSCEEEEEECSBCCCCCCCCE------EEESSBC---CCCTTSCCBCCHHHHHHHHHHHHH-----SCC
T ss_pred HHH-HHHHhcCCCcEEEEcCccccCCCcccCc------eeccccc---ccCCCCCceEeHHHHHHHHHHHhc-----Ccc
Confidence 954 5565668999999999999999653210 0111111 123455799999999999999998 467
Q ss_pred CCCceEEEeCCCCcCHH
Q 010005 248 VAGMAFFITNLEPIKFW 264 (520)
Q Consensus 248 ~~g~~yni~~~~~~t~~ 264 (520)
..|++|++++.++....
T Consensus 205 ~~g~~~~~~~~~~~~~~ 221 (224)
T 3h2s_A 205 AIRDRIVVRDADLEHHH 221 (224)
T ss_dssp CTTSEEEEEECC-----
T ss_pred ccCCEEEEecCcchhcc
Confidence 78999999987765543
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-29 Score=237.87 Aligned_cols=219 Identities=14% Similarity=0.073 Sum_probs=145.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCEE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~V 88 (520)
||||||||+|+||++++++|+++| ++|+++ .|++.+ +... . ++++++.+|++|.++ +.++++|+|
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g-~~V~~~--------~R~~~~--~~~~-~-~~~~~~~~D~~d~~~--~~~~~~d~v 65 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRG-HEVTAI--------VRNAGK--ITQT-H-KDINILQKDIFDLTL--SDLSDQNVV 65 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEE--------ESCSHH--HHHH-C-SSSEEEECCGGGCCH--HHHTTCSEE
T ss_pred CeEEEEcCCchhHHHHHHHHHhCC-CEEEEE--------EcCchh--hhhc-c-CCCeEEeccccChhh--hhhcCCCEE
Confidence 689999999999999999999999 599994 444331 1111 1 578999999999887 888999999
Q ss_pred EEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHH
Q 010005 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAE 168 (520)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E 168 (520)
||+|+.... ..+.|+.++.+++++|++.+++|+|++||..+|+..... .+..|+. +..|.+.|+.+|...|
T Consensus 66 i~~ag~~~~------~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~-~~~~~~~--~~~~~~~y~~~k~~~e 136 (221)
T 3ew7_A 66 VDAYGISPD------EAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQIDEDG-NTLLESK--GLREAPYYPTARAQAK 136 (221)
T ss_dssp EECCCSSTT------TTTSHHHHHHHHHHHHCSCCSSEEEEECCCC----------------------CCCSCCHHHHHH
T ss_pred EECCcCCcc------ccchHHHHHHHHHHHHHhcCCceEEEEecceEEEcCCCC-ccccccC--CCCCHHHHHHHHHHHH
Confidence 999997321 256799999999999999999999999999877533221 2344544 4567788999999999
Q ss_pred HHHHHhcC-CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhccccc
Q 010005 169 ALVLFANN-IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247 (520)
Q Consensus 169 ~~~~~~~~-~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~ 247 (520)
.+. .+.. ..|++++++||+.+|||+... ..+ ...+..+...+++. +++|++|+|++++.+++ .+.
T Consensus 137 ~~~-~~~~~~~gi~~~ivrp~~v~g~~~~~--~~~---~~~~~~~~~~~~~~---~~i~~~Dva~~~~~~l~-----~~~ 202 (221)
T 3ew7_A 137 QLE-HLKSHQAEFSWTYISPSAMFEPGERT--GDY---QIGKDHLLFGSDGN---SFISMEDYAIAVLDEIE-----RPN 202 (221)
T ss_dssp HHH-HHHTTTTTSCEEEEECSSCCCCC-----------------------------CCCHHHHHHHHHHHHH-----SCS
T ss_pred HHH-HHHhhccCccEEEEeCcceecCCCcc--Cce---EeccccceecCCCC---ceEeHHHHHHHHHHHHh-----Ccc
Confidence 873 3333 579999999999999985421 111 11223333444433 79999999999999999 567
Q ss_pred CCCceEEEeCCCCcCHHH
Q 010005 248 VAGMAFFITNLEPIKFWD 265 (520)
Q Consensus 248 ~~g~~yni~~~~~~t~~e 265 (520)
..|+.||++++++.+..|
T Consensus 203 ~~g~~~~~~~~~~~~~~~ 220 (221)
T 3ew7_A 203 HLNEHFTVAGKLEHHHHH 220 (221)
T ss_dssp CTTSEEECCC--------
T ss_pred ccCCEEEECCCCcccccc
Confidence 789999999988766544
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=237.98 Aligned_cols=230 Identities=15% Similarity=0.067 Sum_probs=172.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhc--CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLEL--GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~--g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
+++|+||||||+|+||++++++|+++ | ++|+++++ ++.+ .... ..+++++.+|++|.+++.++++
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g-~~V~~~~r--------~~~~--~~~~--~~~~~~~~~D~~d~~~~~~~~~ 68 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDK-FVAKGLVR--------SAQG--KEKI--GGEADVFIGDITDADSINPAFQ 68 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTT-CEEEEEES--------CHHH--HHHT--TCCTTEEECCTTSHHHHHHHHT
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCC-cEEEEEEc--------CCCc--hhhc--CCCeeEEEecCCCHHHHHHHHc
Confidence 35789999999999999999999999 7 59999544 3221 1111 2467899999999999999999
Q ss_pred CCCEEEEcccCCCC---------C-------cchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 GASTVFYVDATDLN---------T-------DDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 ~~D~Vih~aa~~~~---------~-------~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|+|||+|+.... . .+....+++|+.++.+++++|++.+++||||+||.+++.
T Consensus 69 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~~---------- 138 (253)
T 1xq6_A 69 GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTN---------- 138 (253)
T ss_dssp TCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTC----------
T ss_pred CCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcCccCCC----------
Confidence 99999999986311 0 111246799999999999999999999999999998752
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccH
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v 227 (520)
+..|......+.|+.+|..+|.+++. .|++++++||+.+||+..... ....+....+++ ...+++|+
T Consensus 139 ~~~~~~~~~~~~y~~sK~~~e~~~~~----~~i~~~~vrpg~v~~~~~~~~------~~~~~~~~~~~~---~~~~~~~~ 205 (253)
T 1xq6_A 139 PDHPLNKLGNGNILVWKRKAEQYLAD----SGTPYTIIRAGGLLDKEGGVR------ELLVGKDDELLQ---TDTKTVPR 205 (253)
T ss_dssp TTCGGGGGGGCCHHHHHHHHHHHHHT----SSSCEEEEEECEEECSCSSSS------CEEEESTTGGGG---SSCCEEEH
T ss_pred CCCccccccchhHHHHHHHHHHHHHh----CCCceEEEecceeecCCcchh------hhhccCCcCCcC---CCCcEEcH
Confidence 11111111225689999999999875 689999999999999865310 000000001111 13569999
Q ss_pred HHHHHHHHHHHHhhhcccccCCCceEEEeCCC---CcCHHHHHHHHHHHcCC
Q 010005 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNLE---PIKFWDFLSIILEGLGY 276 (520)
Q Consensus 228 ~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~---~~t~~el~~~i~~~~g~ 276 (520)
+|+|++++.+++ .+...+++||+++++ ++++.|+++.+.+.+|+
T Consensus 206 ~Dva~~~~~~~~-----~~~~~g~~~~i~~~~~~~~~s~~e~~~~~~~~~g~ 252 (253)
T 1xq6_A 206 ADVAEVCIQALL-----FEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTSR 252 (253)
T ss_dssp HHHHHHHHHHTT-----CGGGTTEEEEEEECCTTTSCCCCCHHHHHHTCCCC
T ss_pred HHHHHHHHHHHc-----CccccCCEEEecCCCcCCCCCHHHHHHHHHHHhCC
Confidence 999999999887 344568899999864 59999999999998875
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-28 Score=247.15 Aligned_cols=234 Identities=12% Similarity=0.111 Sum_probs=178.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCC-CCC---CCC--CCCCCCCcEEEEecCCCHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSE-SNS---LLP--DSLSSGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~-~~~---~l~--~~~~~~~v~~~~~Dl~d~~~l~~ 80 (520)
++|+|+||||+|+||++++++|+++| ++|++++ |++ ... ... ..+...+++++.+|+.|.+++.+
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~--------R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~ 73 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFS-HPTFIYA--------RPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVS 73 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTT-CCEEEEE--------CCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHH
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCC-CcEEEEE--------CCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHH
Confidence 46899999999999999999999999 5999954 433 100 000 00113468999999999999999
Q ss_pred HHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCC-CCEEEEeecccccccCCCCCCCCCCCccCCCCC-CC
Q 010005 81 VLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF-QD 158 (520)
Q Consensus 81 ~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-vkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p-~~ 158 (520)
+++++|+|||+++... +.++.+++++|++.| ++|||+ ++||... +|+. +..| .+
T Consensus 74 a~~~~d~vi~~a~~~~------------~~~~~~l~~aa~~~g~v~~~v~----S~~g~~~------~~~~--~~~p~~~ 129 (321)
T 3c1o_A 74 VLKQVDIVISALPFPM------------ISSQIHIINAIKAAGNIKRFLP----SDFGCEE------DRIK--PLPPFES 129 (321)
T ss_dssp HHTTCSEEEECCCGGG------------SGGGHHHHHHHHHHCCCCEEEC----SCCSSCG------GGCC--CCHHHHH
T ss_pred HHcCCCEEEECCCccc------------hhhHHHHHHHHHHhCCccEEec----cccccCc------cccc--cCCCcch
Confidence 9999999999998521 567899999999999 999983 3454221 2222 2233 45
Q ss_pred hHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHH---HhcCCCceEEecCCCcccccccHHHHHHHHH
Q 010005 159 LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVN---LAKPGWTKFIIGSGENMSDFTYVENVAHAHV 235 (520)
Q Consensus 159 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~---~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~ 235 (520)
.| .+|..+|++++. .|++++++||+.++|+. .+.+.. ....++.+.++++|+..++|+|++|+|++++
T Consensus 130 ~y-~sK~~~e~~~~~----~~~~~~~lrp~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~ 200 (321)
T 3c1o_A 130 VL-EKKRIIRRAIEA----AALPYTYVSANCFGAYF----VNYLLHPSPHPNRNDDIVIYGTGETKFVLNYEEDIAKYTI 200 (321)
T ss_dssp HH-HHHHHHHHHHHH----HTCCBEEEECCEEHHHH----HHHHHCCCSSCCTTSCEEEETTSCCEEEEECHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHH----cCCCeEEEEeceecccc----ccccccccccccccCceEEecCCCcceeEeeHHHHHHHHH
Confidence 79 999999999976 47999999999888752 233322 1234555678889999999999999999999
Q ss_pred HHHHhhhcccccCCCceEEEeC-CCCcCHHHHHHHHHHHcCCCCCcccCChHH
Q 010005 236 CAAEALDSRMVSVAGMAFFITN-LEPIKFWDFLSIILEGLGYQRPFIKLPTGV 287 (520)
Q Consensus 236 ~~~~~~~~~~~~~~g~~yni~~-~~~~t~~el~~~i~~~~g~~~~~v~~p~~~ 287 (520)
.+++ .+...|+.|++++ ++.+|+.|+++.+.+.+|.+.+...+|...
T Consensus 201 ~~l~-----~~~~~g~~~~~~g~~~~~t~~e~~~~~~~~~g~~~~~~~~~~~~ 248 (321)
T 3c1o_A 201 KVAC-----DPRCCNRIVIYRPPKNIISQNELISLWEAKSGLSFKKVHMPDEQ 248 (321)
T ss_dssp HHHH-----CGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTSCCCEEEECHHH
T ss_pred HHHh-----CccccCeEEEEeCCCCcccHHHHHHHHHHHcCCcceeeeCCHHH
Confidence 9998 3445678899986 478999999999999999988777787554
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-29 Score=235.60 Aligned_cols=205 Identities=17% Similarity=0.072 Sum_probs=161.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
|+|+|+||||+|+||++++++|+++|+ ++|++ +.|++.+ ..++++.+.+|+.|.+++.+++ +
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~--------~~r~~~~-------~~~~~~~~~~D~~~~~~~~~~~--~ 66 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIA--------PARKALA-------EHPRLDNPVGPLAELLPQLDGS--I 66 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEEC--------CBSSCCC-------CCTTEECCBSCHHHHGGGCCSC--C
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEE--------EeCCCcc-------cCCCceEEeccccCHHHHHHhh--h
Confidence 468999999999999999999999995 28999 4554432 1346888999999998888777 9
Q ss_pred CEEEEcccCCC-CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHH
Q 010005 86 STVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (520)
Q Consensus 86 D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK 164 (520)
|+|||+|+... ...+++..+++|+.++.+++++|++.+++|+||+||..+|+ .|.+.|+.+|
T Consensus 67 d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~-----------------~~~~~y~~sK 129 (215)
T 2a35_A 67 DTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADA-----------------KSSIFYNRVK 129 (215)
T ss_dssp SEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCT-----------------TCSSHHHHHH
T ss_pred cEEEECeeeccccCCCHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECCcccCC-----------------CCccHHHHHH
Confidence 99999999732 23567889999999999999999999999999999999873 1346899999
Q ss_pred HHHHHHHHHhcCCCCce-EEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhc
Q 010005 165 AQAEALVLFANNIDGLL-TCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (520)
Q Consensus 165 ~~~E~~~~~~~~~~gi~-~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~ 243 (520)
..+|++++. .|++ ++++||+.+|||+.... +...+. +.... .+++ .++++|++|+|++++.+++
T Consensus 130 ~~~e~~~~~----~~~~~~~~vrp~~v~g~~~~~~---~~~~~~-~~~~~-~~~~--~~~~i~~~Dva~~~~~~~~---- 194 (215)
T 2a35_A 130 GELEQALQE----QGWPQLTIARPSLLFGPREEFR---LAEILA-APIAR-ILPG--KYHGIEACDLARALWRLAL---- 194 (215)
T ss_dssp HHHHHHHTT----SCCSEEEEEECCSEESTTSCEE---GGGGTT-CCCC-----C--HHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHH----cCCCeEEEEeCceeeCCCCcch---HHHHHH-Hhhhh-ccCC--CcCcEeHHHHHHHHHHHHh----
Confidence 999999876 4899 99999999999986521 111222 11112 2233 7799999999999999988
Q ss_pred ccccCCCceEEEeCCCCcCH
Q 010005 244 RMVSVAGMAFFITNLEPIKF 263 (520)
Q Consensus 244 ~~~~~~g~~yni~~~~~~t~ 263 (520)
.+ .+++||+++++.+++
T Consensus 195 -~~--~~~~~~i~~~~~~~~ 211 (215)
T 2a35_A 195 -EE--GKGVRFVESDELRKL 211 (215)
T ss_dssp -CC--CSEEEEEEHHHHHHH
T ss_pred -cC--CCCceEEcHHHHHHh
Confidence 22 278999998765544
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-28 Score=245.76 Aligned_cols=242 Identities=13% Similarity=0.062 Sum_probs=180.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC---CCC--CCCCCCCcEEEEecCCCHHHHHHHH
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS---LLP--DSLSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~---~l~--~~~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
+|+|+||||||+||++++++|+++| ++|+++ .|+.... ... ..+...+++.+.+|+.|++++.+++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~--------~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~ 74 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLG-HPTYVL--------FRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDAL 74 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEE--------CCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC-CcEEEE--------ECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHH
Confidence 5789999999999999999999999 599994 4543210 000 0012357899999999999999999
Q ss_pred cCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCC-CCEEEEeecccccccCCCCCCCCCCCccCCCCC-CChH
Q 010005 83 EGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF-QDLM 160 (520)
Q Consensus 83 ~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-vkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p-~~~Y 160 (520)
+++|+|||+++.... ..|+.++.+++++|+++| ++|||+ | +||..... . +. +..| .+.|
T Consensus 75 ~~~d~vi~~a~~~~~--------~~~~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~~~---~--~~--~~~p~~~~y 135 (313)
T 1qyd_A 75 KQVDVVISALAGGVL--------SHHILEQLKLVEAIKEAGNIKRFLP-S---EFGMDPDI---M--EH--ALQPGSITF 135 (313)
T ss_dssp TTCSEEEECCCCSSS--------STTTTTHHHHHHHHHHSCCCSEEEC-S---CCSSCTTS---C--CC--CCSSTTHHH
T ss_pred hCCCEEEECCccccc--------hhhHHHHHHHHHHHHhcCCCceEEe-c---CCcCCccc---c--cc--CCCCCcchH
Confidence 999999999986322 237888999999999999 999996 3 45432111 0 11 2234 4578
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHh
Q 010005 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEA 240 (520)
Q Consensus 161 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~ 240 (520)
.+|..+|++++. .|++++++||+.++|+....+..........++.+.++++|+..++|+|++|+|++++.+++
T Consensus 136 -~sK~~~e~~~~~----~g~~~~ilrp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~~~l~- 209 (313)
T 1qyd_A 136 -IDKRKVRRAIEA----ASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSID- 209 (313)
T ss_dssp -HHHHHHHHHHHH----TTCCBCEEECCEEHHHHTTTSSCTTCCSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTT-
T ss_pred -HHHHHHHHHHHh----cCCCeEEEEeceeccccccccccccccccCCCCeEEEeCCCCceEEEEEHHHHHHHHHHHHh-
Confidence 999999999975 58999999999998853221110000011234455677889999999999999999999887
Q ss_pred hhcccccCCCceEEEeCC-CCcCHHHHHHHHHHHcCCCCCcccCChHH
Q 010005 241 LDSRMVSVAGMAFFITNL-EPIKFWDFLSIILEGLGYQRPFIKLPTGV 287 (520)
Q Consensus 241 ~~~~~~~~~g~~yni~~~-~~~t~~el~~~i~~~~g~~~~~v~~p~~~ 287 (520)
.+...++.|+++++ +.+|+.|+++.+.+.+|.+.+...+|...
T Consensus 210 ----~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~ 253 (313)
T 1qyd_A 210 ----DPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYISSQD 253 (313)
T ss_dssp ----CGGGSSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBCSHH
T ss_pred ----CcccCCceEEEeCCCCccCHHHHHHHHHHhcCCCCceEECCHHH
Confidence 34445788888865 78999999999999999987777777543
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=217.73 Aligned_cols=203 Identities=17% Similarity=0.210 Sum_probs=155.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCE
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~ 87 (520)
+|+|+||||+|+||++++++|+++| ++|+++++ ++.+ ... ....+++++.+|+.|.+++.++++++|+
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g-~~V~~~~r--------~~~~--~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 70 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVR--------DSSR--LPS-EGPRPAHVVVGDVLQAADVDKTVAGQDA 70 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEES--------CGGG--SCS-SSCCCSEEEESCTTSHHHHHHHHTTCSE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCC-CeEEEEEe--------Chhh--ccc-ccCCceEEEEecCCCHHHHHHHHcCCCE
Confidence 3899999999999999999999999 59999544 3331 111 1135789999999999999999999999
Q ss_pred EEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHH
Q 010005 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQA 167 (520)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~ 167 (520)
|||+|+.... .++ .++|+.++.+++++|++.+++||||+||.++|+.... . ..+.+.|+.+|..+
T Consensus 71 vi~~a~~~~~-~~~---~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~~~~~~~--------~---~~~~~~y~~~K~~~ 135 (206)
T 1hdo_A 71 VIVLLGTRND-LSP---TTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTK--------V---PPRLQAVTDDHIRM 135 (206)
T ss_dssp EEECCCCTTC-CSC---CCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTC--------S---CGGGHHHHHHHHHH
T ss_pred EEECccCCCC-CCc---cchHHHHHHHHHHHHHHhCCCeEEEEeeeeeccCccc--------c---cccchhHHHHHHHH
Confidence 9999997332 122 3589999999999999999999999999999853221 1 11567899999999
Q ss_pred HHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhccccc
Q 010005 168 EALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247 (520)
Q Consensus 168 E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~ 247 (520)
|++++. .+++++++||+.+ |++... +......+ +....+++|++|+|++++.+++ .+.
T Consensus 136 e~~~~~----~~i~~~~lrp~~~-~~~~~~-----------~~~~~~~~-~~~~~~~i~~~Dva~~~~~~~~-----~~~ 193 (206)
T 1hdo_A 136 HKVLRE----SGLKYVAVMPPHI-GDQPLT-----------GAYTVTLD-GRGPSRVISKHDLGHFMLRCLT-----TDE 193 (206)
T ss_dssp HHHHHH----TCSEEEEECCSEE-ECCCCC-----------SCCEEESS-SCSSCSEEEHHHHHHHHHHTTS-----CST
T ss_pred HHHHHh----CCCCEEEEeCCcc-cCCCCC-----------cceEeccc-CCCCCCccCHHHHHHHHHHHhc-----Ccc
Confidence 999865 6899999999997 443211 11111111 1111589999999999998887 345
Q ss_pred CCCceEEEeCCC
Q 010005 248 VAGMAFFITNLE 259 (520)
Q Consensus 248 ~~g~~yni~~~~ 259 (520)
..|++|++++++
T Consensus 194 ~~g~~~~i~~g~ 205 (206)
T 1hdo_A 194 YDGHSTYPSHQY 205 (206)
T ss_dssp TTTCEEEEECCC
T ss_pred ccccceeeeccc
Confidence 678999999875
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.5e-28 Score=240.35 Aligned_cols=242 Identities=15% Similarity=0.115 Sum_probs=177.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCC-CCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSE-SNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~-~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
||+|+||||+|+||++++++|+++| ++|+++++..+. ...+ .+......+...+++++.+|+.|.+++.++++++|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~--~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d 78 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAG-NPTYALVRKTIT--AANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVD 78 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHT-CCEEEEECCSCC--SSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCS
T ss_pred CcEEEEECCCchHHHHHHHHHHhCC-CcEEEEECCCcc--cCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCC
Confidence 5789999999999999999999999 599995443200 0000 10000001112468999999999999999999999
Q ss_pred EEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCC-CCEEEEeecccccccCCCCCCCCCCCccCCCCC-CChHHHHH
Q 010005 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF-QDLMCDLK 164 (520)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-vkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p-~~~Y~~sK 164 (520)
+|||+++... +.++.+++++|++.| ++|||+ | +||.. .+|+. +..| .+.| .+|
T Consensus 79 ~vi~~a~~~~------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~------~~~~~--~~~p~~~~y-~sK 133 (307)
T 2gas_A 79 IVICAAGRLL------------IEDQVKIIKAIKEAGNVKKFFP-S---EFGLD------VDRHD--AVEPVRQVF-EEK 133 (307)
T ss_dssp EEEECSSSSC------------GGGHHHHHHHHHHHCCCSEEEC-S---CCSSC------TTSCC--CCTTHHHHH-HHH
T ss_pred EEEECCcccc------------cccHHHHHHHHHhcCCceEEee-c---ccccC------ccccc--CCCcchhHH-HHH
Confidence 9999998632 567889999999998 999984 3 45421 12222 2233 4578 999
Q ss_pred HHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcc
Q 010005 165 AQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSR 244 (520)
Q Consensus 165 ~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~ 244 (520)
..+|++++. .|++++++||+.++|+....+... ......++.+.++++|+..++|+|++|+|++++.+++
T Consensus 134 ~~~e~~~~~----~~i~~~~lrp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~----- 203 (307)
T 2gas_A 134 ASIRRVIEA----EGVPYTYLCCHAFTGYFLRNLAQL-DATDPPRDKVVILGDGNVKGAYVTEADVGTFTIRAAN----- 203 (307)
T ss_dssp HHHHHHHHH----HTCCBEEEECCEETTTTGGGTTCT-TCSSCCSSEEEEETTSCSEEEEECHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHH----cCCCeEEEEcceeecccccccccc-ccccCCCCeEEEecCCCcceEEeeHHHHHHHHHHHHc-----
Confidence 999999876 489999999999987643211110 0011234456778889999999999999999999987
Q ss_pred cccCCCceEEEeCC-CCcCHHHHHHHHHHHcCCCCCcccCChHH
Q 010005 245 MVSVAGMAFFITNL-EPIKFWDFLSIILEGLGYQRPFIKLPTGV 287 (520)
Q Consensus 245 ~~~~~g~~yni~~~-~~~t~~el~~~i~~~~g~~~~~v~~p~~~ 287 (520)
.+...++.|++.++ +.+|+.|+++.+.+.+|.+.+...+|...
T Consensus 204 ~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~ 247 (307)
T 2gas_A 204 DPNTLNKAVHIRLPKNYLTQNEVIALWEKKIGKTLEKTYVSEEQ 247 (307)
T ss_dssp CGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTSCCEEEEECHHH
T ss_pred CccccCceEEEeCCCCcCCHHHHHHHHHHHhCCCCceeecCHHH
Confidence 34445788888764 68999999999999999987777777543
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-28 Score=242.13 Aligned_cols=236 Identities=14% Similarity=0.163 Sum_probs=177.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC----CC--CCCCCCCCcEEEEecCCCHHHHHHH
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS----LL--PDSLSSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~----~l--~~~~~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
+|+|+||||+|+||+++++.|+++| ++|+++ .|+.... .. ...+...+++++.+|+.|++++.++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l--------~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~ 74 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLG-HPTFLL--------VRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEA 74 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEE--------CCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC-CCEEEE--------ECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHH
Confidence 5789999999999999999999999 599994 4443210 00 0011235789999999999999999
Q ss_pred HcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCC-CCEEEEeecccccccCCCCCCCCCCCccCCCCC-CCh
Q 010005 82 LEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF-QDL 159 (520)
Q Consensus 82 l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-vkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p-~~~ 159 (520)
++++|+|||+++.. ++.++.+++++|+++| ++|||+ | +||.. .+|.. +..| .+.
T Consensus 75 ~~~~d~vi~~a~~~------------~~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~------~~~~~--~~~p~~~~ 130 (308)
T 1qyc_A 75 VKNVDVVISTVGSL------------QIESQVNIIKAIKEVGTVKRFFP-S---EFGND------VDNVH--AVEPAKSV 130 (308)
T ss_dssp HHTCSEEEECCCGG------------GSGGGHHHHHHHHHHCCCSEEEC-S---CCSSC------TTSCC--CCTTHHHH
T ss_pred HcCCCEEEECCcch------------hhhhHHHHHHHHHhcCCCceEee-c---ccccC------ccccc--cCCcchhH
Confidence 99999999999852 1556789999999998 999984 3 35421 12222 2234 457
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHH
Q 010005 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 160 Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~ 239 (520)
| .+|..+|++++. .|++++++||+.++|+....+.... .....++.+.++++|+..++|+|++|+|++++.+++
T Consensus 131 y-~sK~~~e~~~~~----~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~ 204 (308)
T 1qyc_A 131 F-EVKAKVRRAIEA----EGIPYTYVSSNCFAGYFLRSLAQAG-LTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVD 204 (308)
T ss_dssp H-HHHHHHHHHHHH----HTCCBEEEECCEEHHHHTTTTTCTT-CSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSS
T ss_pred H-HHHHHHHHHHHh----cCCCeEEEEeceecccccccccccc-ccCCCCCceEEecCCCceEEEecHHHHHHHHHHHHh
Confidence 8 999999999976 4799999999999885332211100 012244566788999999999999999999998876
Q ss_pred hhhcccccCCCceEEEeCC-CCcCHHHHHHHHHHHcCCCCCcccCChHH
Q 010005 240 ALDSRMVSVAGMAFFITNL-EPIKFWDFLSIILEGLGYQRPFIKLPTGV 287 (520)
Q Consensus 240 ~~~~~~~~~~g~~yni~~~-~~~t~~el~~~i~~~~g~~~~~v~~p~~~ 287 (520)
.+...++.|+++++ +.+|+.|+++.+.+.+|.+.+...+|...
T Consensus 205 -----~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~ 248 (308)
T 1qyc_A 205 -----DPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEE 248 (308)
T ss_dssp -----CGGGTTEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEECHHH
T ss_pred -----CccccCeEEEEeCCCCccCHHHHHHHHHHHhCCCCceEeCCHHH
Confidence 34455788998764 78999999999999999987777777543
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=222.23 Aligned_cols=207 Identities=14% Similarity=0.069 Sum_probs=157.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCc--EEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKC--IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~--~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
++|+|+||||+|+||++++++|+++| + +|+++++. +.+ +.. ....++.++.+|++|.+++.+++++
T Consensus 17 ~~~~vlVtGasg~iG~~l~~~L~~~G-~~~~V~~~~r~--------~~~--~~~-~~~~~~~~~~~D~~d~~~~~~~~~~ 84 (242)
T 2bka_A 17 QNKSVFILGASGETGRVLLKEILEQG-LFSKVTLIGRR--------KLT--FDE-EAYKNVNQEVVDFEKLDDYASAFQG 84 (242)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHT-CCSEEEEEESS--------CCC--CCS-GGGGGCEEEECCGGGGGGGGGGGSS
T ss_pred cCCeEEEECCCcHHHHHHHHHHHcCC-CCCEEEEEEcC--------CCC--ccc-cccCCceEEecCcCCHHHHHHHhcC
Confidence 45899999999999999999999999 5 89995543 221 111 1123678999999999999999999
Q ss_pred CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHH
Q 010005 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (520)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK 164 (520)
+|+|||+||......+++..+++|+.++.+++++|++.+++|+|++||.++|+. +.+.|+.+|
T Consensus 85 ~d~vi~~ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~-----------------~~~~Y~~sK 147 (242)
T 2bka_A 85 HDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKS-----------------SNFLYLQVK 147 (242)
T ss_dssp CSEEEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT-----------------CSSHHHHHH
T ss_pred CCEEEECCCcccccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcCCCC-----------------CcchHHHHH
Confidence 999999999743233567889999999999999999999999999999998731 246899999
Q ss_pred HHHHHHHHHhcCCCCc-eEEEEecCccccCCCCC-chHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhh
Q 010005 165 AQAEALVLFANNIDGL-LTCALRPSNVFGPGDTQ-LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242 (520)
Q Consensus 165 ~~~E~~~~~~~~~~gi-~~~ilRp~~vyGp~~~~-~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~ 242 (520)
...|.+++.+ ++ +++++||+.+|||+... ....+........+. .. ....+++++|+|++++.+++
T Consensus 148 ~~~e~~~~~~----~~~~~~~vrpg~v~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~dva~~~~~~~~--- 215 (242)
T 2bka_A 148 GEVEAKVEEL----KFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLPD-SW----ASGHSVPVVTVVRAMLNNVV--- 215 (242)
T ss_dssp HHHHHHHHTT----CCSEEEEEECCEEECTTGGGSHHHHHHHHHHCSCCT-TG----GGGTEEEHHHHHHHHHHHHT---
T ss_pred HHHHHHHHhc----CCCCeEEEcCceecCCCCCCcHHHHHHHHhhcccCc-cc----cCCcccCHHHHHHHHHHHHh---
Confidence 9999999874 56 69999999999997543 233333333322211 11 12358999999999999987
Q ss_pred cccccCCCceEEEeC
Q 010005 243 SRMVSVAGMAFFITN 257 (520)
Q Consensus 243 ~~~~~~~g~~yni~~ 257 (520)
....++.|++.+
T Consensus 216 ---~~~~~~~~~~~~ 227 (242)
T 2bka_A 216 ---RPRDKQMELLEN 227 (242)
T ss_dssp ---SCCCSSEEEEEH
T ss_pred ---CccccCeeEeeH
Confidence 333445666654
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.6e-26 Score=219.79 Aligned_cols=229 Identities=12% Similarity=0.016 Sum_probs=164.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc----
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~---- 83 (520)
||+||||||+|+||++++++|+++| ++|+++| |++.+ +.. .+.+|++|.+++.++++
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g-~~V~~~~--------r~~~~--~~~--------~~~~D~~~~~~~~~~~~~~~~ 61 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAG-HTVIGID--------RGQAD--IEA--------DLSTPGGRETAVAAVLDRCGG 61 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE--------SSSSS--EEC--------CTTSHHHHHHHHHHHHHHHTT
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCC-CEEEEEe--------CChhH--ccc--------cccCCcccHHHHHHHHHHcCC
Confidence 3689999999999999999999999 5999954 43321 110 15789999999988887
Q ss_pred CCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHC----CCCEEEEeecccccccCCCCCCC-------CCCCccC
Q 010005 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHN-------GDETLTC 152 (520)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~----gvkr~V~~SS~~vyg~~~~~~~~-------~~E~~~~ 152 (520)
++|+|||+||......+++..+++|+.++.++++++.+. +.+|+|++||..+|+..... .+ .+|+.+.
T Consensus 62 ~~d~vi~~Ag~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~-~~~~~~~~~~~~~~~~ 140 (255)
T 2dkn_A 62 VLDGLVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAE-LPMVEAMLAGDEARAI 140 (255)
T ss_dssp CCSEEEECCCCCTTSSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGG-CHHHHHHHHTCHHHHH
T ss_pred CccEEEECCCCCCcchhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccccc-cchhhhhcccchhhhh
Confidence 799999999985435678899999999999999988764 66899999999998643111 00 0111100
Q ss_pred -----CCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccccc
Q 010005 153 -----CWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (520)
Q Consensus 153 -----~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (520)
+..+.+.|+.+|+..|.+++.++.+ +|++++++||+.++|+.... +......+....... + ...++
T Consensus 141 ~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~~~----~~~~~~~~~~~~~~~-~-~~~~~ 214 (255)
T 2dkn_A 141 ELAEQQGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQA----SKADPRYGESTRRFV-A-PLGRG 214 (255)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHHHH----HHHCTTTHHHHHSCC-C-TTSSC
T ss_pred hhccccCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhhhh----cccchhhHHHHHHHH-H-HhcCC
Confidence 0135678999999999999988765 69999999999999874321 111111111000011 2 45689
Q ss_pred ccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHH
Q 010005 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWD 265 (520)
Q Consensus 225 i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~e 265 (520)
+|++|+|++++.+++.. .....|+.|+++++..++++|
T Consensus 215 ~~~~dva~~~~~l~~~~---~~~~~G~~~~v~gg~~~~~~e 252 (255)
T 2dkn_A 215 SEPREVAEAIAFLLGPQ---ASFIHGSVLFVDGGMDALMRA 252 (255)
T ss_dssp BCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTHHHHHCT
T ss_pred CCHHHHHHHHHHHhCCC---cccceeeEEEecCCeEeeeec
Confidence 99999999999988721 124678999999987666544
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.2e-24 Score=204.75 Aligned_cols=206 Identities=13% Similarity=0.131 Sum_probs=142.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
+++||+||||||+|+||+++++.|+++|.++|++++ |++.+ +. .+...+++.+.+|++|++++.+++++
T Consensus 20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~--------R~~~~--~~-~~~~~~~~~~~~Dl~d~~~~~~~~~~ 88 (236)
T 3qvo_A 20 QGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFA--------RQPAK--IH-KPYPTNSQIIMGDVLNHAALKQAMQG 88 (236)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEE--------SSGGG--SC-SSCCTTEEEEECCTTCHHHHHHHHTT
T ss_pred cCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEE--------cChhh--hc-ccccCCcEEEEecCCCHHHHHHHhcC
Confidence 456789999999999999999999999944899954 44331 11 12235789999999999999999999
Q ss_pred CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHH
Q 010005 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (520)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK 164 (520)
+|+|||+++... . ...+.++++++++.+++|||++||..+|+.......+.++.. ...+...|..
T Consensus 89 ~D~vv~~a~~~~----~-------~~~~~~~~~~~~~~~~~~iV~iSS~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-- 153 (236)
T 3qvo_A 89 QDIVYANLTGED----L-------DIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFVEWNNAV--IGEPLKPFRR-- 153 (236)
T ss_dssp CSEEEEECCSTT----H-------HHHHHHHHHHHHHTTCCEEEEECCCCC------------------CGGGHHHHH--
T ss_pred CCEEEEcCCCCc----h-------hHHHHHHHHHHHHcCCCEEEEEecceecCCCCcccccchhhc--ccchHHHHHH--
Confidence 999999998521 1 245779999999999999999999999975433222223322 2233444544
Q ss_pred HHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcc-cccccHHHHHHHHHHHHHhhhc
Q 010005 165 AQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM-SDFTYVENVAHAHVCAAEALDS 243 (520)
Q Consensus 165 ~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~-~~~i~v~Dva~ai~~~~~~~~~ 243 (520)
+|+.+. +.|++++++||+.++++..... .....+... ..+++++|+|++++.++..
T Consensus 154 --~~~~l~----~~gi~~~~vrPg~i~~~~~~~~--------------~~~~~~~~~~~~~i~~~DvA~~i~~ll~~--- 210 (236)
T 3qvo_A 154 --AADAIE----ASGLEYTILRPAWLTDEDIIDY--------------ELTSRNEPFKGTIVSRKSVAALITDIIDK--- 210 (236)
T ss_dssp --HHHHHH----TSCSEEEEEEECEEECCSCCCC--------------EEECTTSCCSCSEEEHHHHHHHHHHHHHS---
T ss_pred --HHHHHH----HCCCCEEEEeCCcccCCCCcce--------------EEeccCCCCCCcEECHHHHHHHHHHHHcC---
Confidence 455554 3699999999999998753211 122222222 4689999999999999982
Q ss_pred ccccCCCceEEEeCCCC
Q 010005 244 RMVSVAGMAFFITNLEP 260 (520)
Q Consensus 244 ~~~~~~g~~yni~~~~~ 260 (520)
.....++.|++++++.
T Consensus 211 -~~~~~g~~~~i~~~~~ 226 (236)
T 3qvo_A 211 -PEKHIGENIGINQPGT 226 (236)
T ss_dssp -TTTTTTEEEEEECSSC
T ss_pred -cccccCeeEEecCCCC
Confidence 1225789999998763
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.1e-25 Score=216.39 Aligned_cols=235 Identities=15% Similarity=0.065 Sum_probs=168.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
++|+||||||+|+||++++++|+++| ++|+++|+. ..+. .+... ...++.++.+|++|.+++.++++
T Consensus 4 ~~k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~--------~~~~~~~~~~-~~~~~~~~~~Dv~~~~~~~~~~~~~ 73 (281)
T 3m1a_A 4 SAKVWLVTGASSGFGRAIAEAAVAAG-DTVIGTARR--------TEALDDLVAA-YPDRAEAISLDVTDGERIDVVAADV 73 (281)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESS--------GGGGHHHHHH-CTTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCC--------HHHHHHHHHh-ccCCceEEEeeCCCHHHHHHHHHHH
Confidence 46899999999999999999999999 599995543 2210 00011 12468899999999998888876
Q ss_pred -----CCCEEEEcccC-------CCCCcchhhHHhhhHHH----HHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDAT-------DLNTDDFYNCYMIIVQG----AKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~g----t~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|+|||+||. .....++...+++|+.| ++.+++.+++.+.+++|++||...+.
T Consensus 74 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~---------- 143 (281)
T 3m1a_A 74 LARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQL---------- 143 (281)
T ss_dssp HHHHSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC----------
T ss_pred HHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccccC----------
Confidence 78999999997 12334567789999999 55566666777888999999987752
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCC-------CchHHHHHHhcCCCceEEecC
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT-------QLVPLLVNLAKPGWTKFIIGS 217 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~-------~~~~~l~~~~~~g~~~~i~g~ 217 (520)
+..+.+.|+.||+..|.+.+.++.+ +|++++++|||.++++... ...+.+......... ...
T Consensus 144 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 215 (281)
T 3m1a_A 144 -----SFAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQ---LVQ 215 (281)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHHHHHHH---HHH
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccccccccccCCcchhhHHHhHHHHH---HHh
Confidence 2345679999999999998887665 7999999999999887432 111111111111111 111
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLG 275 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g 275 (520)
+....++.+++|+|++++.+++ ....+..|+++++....+.+....+.+.++
T Consensus 216 ~~~~~~~~~~~dva~a~~~~~~------~~~~~~~~~l~s~~~~~i~g~~~~i~~~~~ 267 (281)
T 3m1a_A 216 GSDGSQPGDPAKAAAAIRLALD------TEKTPLRLALGGDAVDFLTGHLDSVRAELT 267 (281)
T ss_dssp C-----CBCHHHHHHHHHHHHH------SSSCCSEEEESHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCCCHHHHHHHHHHHHh------CCCCCeEEecCchHHHHHHHHHHHHHHHHH
Confidence 2334567889999999999998 345677999999777777777777766553
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.1e-24 Score=210.31 Aligned_cols=237 Identities=16% Similarity=0.148 Sum_probs=174.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC-CCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~-~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
.++|+||||||+|+||++++++|+++| ++|+++|+.... . ..+.+.+ ...++.++.+|++|.+++.++++
T Consensus 14 l~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~~~~------~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 85 (278)
T 2bgk_A 14 LQDKVAIITGGAGGIGETTAKLFVRYG-AKVVIADIADDH------G-QKVCNNIGSPDVISFVHCDVTKDEDVRNLVDT 85 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHH------H-HHHHHHHCCTTTEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCChhH------H-HHHHHHhCCCCceEEEECCCCCHHHHHHHHHH
Confidence 346899999999999999999999999 599996543210 0 0000001 11268899999999999888876
Q ss_pred ------CCCEEEEcccCCC---------CCcchhhHHhhhHHHHHHHHHHHHHC----CCCEEEEeecccccccCCCCCC
Q 010005 84 ------GASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 84 ------~~D~Vih~aa~~~---------~~~~~~~~~~~Nv~gt~~ll~aa~~~----gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
++|+|||+||... ...++...+++|+.++.++++++... +.+++|++||..+|...
T Consensus 86 ~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~----- 160 (278)
T 2bgk_A 86 TIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAG----- 160 (278)
T ss_dssp HHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCC-----
T ss_pred HHHHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCCC-----
Confidence 7999999999632 11355778999999999999998763 56799999999887421
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc---hHHHHHHhcCCCceEEecCC
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL---VPLLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~---~~~l~~~~~~g~~~~i~g~g 218 (520)
..+...|+.+|+..|.+++.++.+ +|++++++||+.++|+..... .+.......... .
T Consensus 161 ---------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~-------~ 224 (278)
T 2bgk_A 161 ---------EGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQA-------A 224 (278)
T ss_dssp ---------TTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHT-------C
T ss_pred ---------CCCCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhcccchhHHHHhhhcc-------c
Confidence 024568999999999998887643 689999999999999875432 122222221111 1
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHc
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGL 274 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~ 274 (520)
.....+++++|+|++++.++.. ......|+.|+++++..+++.|+++.+.+.+
T Consensus 225 ~~~~~~~~~~dva~~~~~l~~~---~~~~~~G~~~~v~gg~~~~~~e~~~~i~~~~ 277 (278)
T 2bgk_A 225 NLKGTLLRAEDVADAVAYLAGD---ESKYVSGLNLVIDGGYTRTNPAFPTALKHGL 277 (278)
T ss_dssp SSCSCCCCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGGGCCTHHHHHSCSCC
T ss_pred ccccccCCHHHHHHHHHHHcCc---ccccCCCCEEEECCcccccCCccchhhhhhc
Confidence 1234689999999999988851 1234678999999999999999999886543
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.7e-24 Score=198.31 Aligned_cols=185 Identities=14% Similarity=0.041 Sum_probs=147.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC---
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--- 84 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~--- 84 (520)
+|+|+||||+|+||++++++|+ +| ++|++++ |++. .+.+|++|++++.+++++
T Consensus 3 kM~vlVtGasg~iG~~~~~~l~-~g-~~V~~~~--------r~~~--------------~~~~D~~~~~~~~~~~~~~~~ 58 (202)
T 3d7l_A 3 AMKILLIGASGTLGSAVKERLE-KK-AEVITAG--------RHSG--------------DVTVDITNIDSIKKMYEQVGK 58 (202)
T ss_dssp SCEEEEETTTSHHHHHHHHHHT-TT-SEEEEEE--------SSSS--------------SEECCTTCHHHHHHHHHHHCC
T ss_pred CcEEEEEcCCcHHHHHHHHHHH-CC-CeEEEEe--------cCcc--------------ceeeecCCHHHHHHHHHHhCC
Confidence 3689999999999999999999 99 5999944 4321 478999999999988875
Q ss_pred CCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHC---CCCEEEEeecccccccCCCCCCCCCCCccCCC
Q 010005 85 ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGDETLTCCW 154 (520)
Q Consensus 85 ~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~---gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~ 154 (520)
+|+|||+||... ...++...+++|+.++.++++++.+. + +++|++||...+. +.
T Consensus 59 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~~~---------------~~ 122 (202)
T 3d7l_A 59 VDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDK-GSFTLTTGIMMED---------------PI 122 (202)
T ss_dssp EEEEEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEE-EEEEEECCGGGTS---------------CC
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccC-CEEEEEcchhhcC---------------CC
Confidence 899999999621 22344677899999999999999877 4 6999999987652 22
Q ss_pred CCCChHHHHHHHHHHHHHHhcCC--CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHH
Q 010005 155 KFQDLMCDLKAQAEALVLFANNI--DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAH 232 (520)
Q Consensus 155 ~p~~~Y~~sK~~~E~~~~~~~~~--~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ 232 (520)
.+...|+.+|...|.+++.++.+ .|++++++||+.++++... .+++...+++++++|+|+
T Consensus 123 ~~~~~Y~~sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~~~------------------~~~~~~~~~~~~~~dva~ 184 (202)
T 3d7l_A 123 VQGASAAMANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWDK------------------LEPFFEGFLPVPAAKVAR 184 (202)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTSCSTTCEEEEEEECCBGGGHHH------------------HGGGSTTCCCBCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHccCCeEEEEEecCccCCchhh------------------hhhhccccCCCCHHHHHH
Confidence 34578999999999999998865 4999999999999987420 012234568999999999
Q ss_pred HHHHHHHhhhcccccCCCceEEEe
Q 010005 233 AHVCAAEALDSRMVSVAGMAFFIT 256 (520)
Q Consensus 233 ai~~~~~~~~~~~~~~~g~~yni~ 256 (520)
+++.+++ ....|++||+.
T Consensus 185 ~~~~~~~------~~~~G~~~~vd 202 (202)
T 3d7l_A 185 AFEKSVF------GAQTGESYQVY 202 (202)
T ss_dssp HHHHHHH------SCCCSCEEEEC
T ss_pred HHHHhhh------ccccCceEecC
Confidence 9988775 45678888874
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=193.28 Aligned_cols=201 Identities=12% Similarity=0.051 Sum_probs=148.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHH-hcCCcEEEEecCCcccccCCCCC-CCCCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLL-ELGKCIVRVTDSTQSLQLDPSES-NSLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~-~~g~~~V~~~D~~~~~~l~r~~~-~~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
||++|+||||+|+||+++++.|+ ++| ++|++++ |++. + + +.+ ...+++.+.+|++|.+++.+++
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~~g-~~V~~~~--------r~~~~~--~-~~~~~~~~~~~~~~~D~~d~~~~~~~~ 71 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTYTD-MHITLYG--------RQLKTR--I-PPEIIDHERVTVIEGSFQNPGXLEQAV 71 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHHCC-CEEEEEE--------SSHHHH--S-CHHHHTSTTEEEEECCTTCHHHHHHHH
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhcCC-ceEEEEe--------cCcccc--c-hhhccCCCceEEEECCCCCHHHHHHHH
Confidence 34569999999999999999999 899 5999954 4332 1 1 111 2357899999999999999999
Q ss_pred cCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCC-hHH
Q 010005 83 EGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQD-LMC 161 (520)
Q Consensus 83 ~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~-~Y~ 161 (520)
+++|+|||+|+.. |+. ++++++++++.+++|+|++||..+|+..... ..+. ...... .|+
T Consensus 72 ~~~d~vv~~ag~~------------n~~-~~~~~~~~~~~~~~~iv~iSs~~~~~~~~~~---~~~~---~~~~~~~~y~ 132 (221)
T 3r6d_A 72 TNAEVVFVGAMES------------GSD-MASIVKALSRXNIRRVIGVSMAGLSGEFPVA---LEKW---TFDNLPISYV 132 (221)
T ss_dssp TTCSEEEESCCCC------------HHH-HHHHHHHHHHTTCCEEEEEEETTTTSCSCHH---HHHH---HHHTSCHHHH
T ss_pred cCCCEEEEcCCCC------------Chh-HHHHHHHHHhcCCCeEEEEeeceecCCCCcc---cccc---cccccccHHH
Confidence 9999999999843 445 9999999999999999999999998532210 0000 001223 799
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCc-ccccccHHHHHHHHHHHH--
Q 010005 162 DLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN-MSDFTYVENVAHAHVCAA-- 238 (520)
Q Consensus 162 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~-~~~~i~v~Dva~ai~~~~-- 238 (520)
.+|...|++++. .|++++++||+.++++... +.. .....+.. ...+++.+|+|++++.++
T Consensus 133 ~~K~~~e~~~~~----~~i~~~~vrpg~v~~~~~~------------~~~-~~~~~~~~~~~~~~~~~dvA~~~~~l~~~ 195 (221)
T 3r6d_A 133 QGERQARNVLRE----SNLNYTILRLTWLYNDPEX------------TDY-ELIPEGAQFNDAQVSREAVVKAIFDILHA 195 (221)
T ss_dssp HHHHHHHHHHHH----SCSEEEEEEECEEECCTTC------------CCC-EEECTTSCCCCCEEEHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh----CCCCEEEEechhhcCCCCC------------cce-eeccCCccCCCceeeHHHHHHHHHHHHHh
Confidence 999999999876 6899999999999987321 111 12222222 234899999999999998
Q ss_pred HhhhcccccCCCceEEEeCCC
Q 010005 239 EALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 239 ~~~~~~~~~~~g~~yni~~~~ 259 (520)
.. .....++.+.++++.
T Consensus 196 ~~----~~~~~~~~~~i~~~~ 212 (221)
T 3r6d_A 196 AD----ETPFHRTSIGVGEPG 212 (221)
T ss_dssp SC----CGGGTTEEEEEECTT
T ss_pred cC----hhhhhcceeeecCCC
Confidence 51 233567888888654
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.9e-24 Score=206.34 Aligned_cols=222 Identities=11% Similarity=0.081 Sum_probs=164.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
+++|+||||||+|+||++++++|+++| ++|+++|+.. ... .+.+.+ ...++.++.+|++|++++.+++
T Consensus 9 ~~~~~vlVtGasggiG~~la~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 79 (255)
T 1fmc_A 9 LDGKCAIITGAGAGIGKEIAITFATAG-ASVVVSDINA--------DAANHVVDEIQQLGGQAFACRCDITSEQELSALA 79 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTT-CEEEEEESCH--------HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEcCCH--------HHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHH
Confidence 346899999999999999999999999 5999955432 100 000000 1246788999999999988887
Q ss_pred c-------CCCEEEEcccCCC------CCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCC
Q 010005 83 E-------GASTVFYVDATDL------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~~------~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
+ ++|+|||+||... ...+++..+++|+.++.++++++. +.+.+++|++||...+.
T Consensus 80 ~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-------- 151 (255)
T 1fmc_A 80 DFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN-------- 151 (255)
T ss_dssp HHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC--------
T ss_pred HHHHHhcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcC--------
Confidence 6 7999999999722 234567789999999999999885 45678999999998763
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCC-chHHHHHHhcCCCceEEecCCCcc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-LVPLLVNLAKPGWTKFIIGSGENM 221 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~-~~~~l~~~~~~g~~~~i~g~g~~~ 221 (520)
+..+.+.|+.+|+..|.+++.++.+ .|++++++||+.++++.... ..+.+......+. ..
T Consensus 152 -------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~---------~~ 215 (255)
T 1fmc_A 152 -------KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHT---------PI 215 (255)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCCHHHHHHHHHTC---------SS
T ss_pred -------CCCCCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhhccChHHHHHHHhcC---------Cc
Confidence 2234678999999999998887643 58999999999999875322 2344433333332 23
Q ss_pred cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCH
Q 010005 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKF 263 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~ 263 (520)
..+.+++|+|++++.++.. ......|++|+++++..+|+
T Consensus 216 ~~~~~~~dva~~~~~l~~~---~~~~~~G~~~~v~gg~~~s~ 254 (255)
T 1fmc_A 216 RRLGQPQDIANAALFLCSP---AASWVSGQILTVSGGGVQEL 254 (255)
T ss_dssp CSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTSCCCC
T ss_pred ccCCCHHHHHHHHHHHhCC---ccccCCCcEEEECCceeccC
Confidence 4578999999999988861 11235688999999887764
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=9.7e-24 Score=203.55 Aligned_cols=218 Identities=16% Similarity=0.107 Sum_probs=161.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
.+++|+||||||+|+||++++++|+++| ++|+++|+. +... .+.+. ..+.+.+.+|++|.+++.++++
T Consensus 4 ~~~~~~vlVTGasggiG~~~a~~l~~~G-~~V~~~~r~--------~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~ 72 (244)
T 1cyd_A 4 NFSGLRALVTGAGKGIGRDTVKALHASG-AKVVAVTRT--------NSDLVSLAKE--CPGIEPVCVDLGDWDATEKALG 72 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESC--------HHHHHHHHHH--STTCEEEECCTTCHHHHHHHHT
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCC--------HHHHHHHHHh--ccCCCcEEecCCCHHHHHHHHH
Confidence 3567899999999999999999999999 599995543 2100 00000 1356788999999999999987
Q ss_pred C---CCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHC----C-CCEEEEeecccccccCCCCCCCCCC
Q 010005 84 G---ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 ~---~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~----g-vkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
+ +|+|||+||... ...+++..+++|+.++.++++++... + .+++|++||..+|..
T Consensus 73 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~---------- 142 (244)
T 1cyd_A 73 GIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVT---------- 142 (244)
T ss_dssp TCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSC----------
T ss_pred HcCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCC----------
Confidence 4 799999999621 23456778999999999999988654 5 579999999988731
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCC--CchHHHHHHhcCCCceEEecCCCcccc
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
..+...|+.+|+..|.+++.++.+ .|++++++||+.++|+... ...+.+...+..+ ...++
T Consensus 143 -----~~~~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~---------~~~~~ 208 (244)
T 1cyd_A 143 -----FPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKER---------HPLRK 208 (244)
T ss_dssp -----CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHH---------STTSS
T ss_pred -----CCCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCccccccccCHHHHHHHHhc---------CCccC
Confidence 123568999999999999887654 6899999999999987532 1122233333222 23468
Q ss_pred cccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
|++++|+|++++.++.. ......|+.+++.++..
T Consensus 209 ~~~~~dva~~~~~l~~~---~~~~~~G~~~~v~gG~~ 242 (244)
T 1cyd_A 209 FAEVEDVVNSILFLLSD---RSASTSGGGILVDAGYL 242 (244)
T ss_dssp CBCHHHHHHHHHHHHSG---GGTTCCSSEEEESTTGG
T ss_pred CCCHHHHHHHHHHHhCc---hhhcccCCEEEECCCcc
Confidence 99999999999988862 12345688999988653
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=198.54 Aligned_cols=211 Identities=11% Similarity=0.035 Sum_probs=162.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
++|+||||||+|+||++++++|+++| ++|+++|+ +... ....++.++.+|++|++++.++++
T Consensus 27 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r--------~~~~------~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 91 (260)
T 3un1_A 27 QQKVVVITGASQGIGAGLVRAYRDRN-YRVVATSR--------SIKP------SADPDIHTVAGDISKPETADRIVREGI 91 (260)
T ss_dssp TCCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEES--------SCCC------CSSTTEEEEESCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeC--------Chhh------cccCceEEEEccCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 59999554 3221 112368899999999999888876
Q ss_pred ----CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCCCC
Q 010005 84 ----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 ----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
++|++||+||.. ....+++..+++|+.|+.++++++ ++.+..++|++||...+...
T Consensus 92 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~--------- 162 (260)
T 3un1_A 92 ERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQPM--------- 162 (260)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSCB---------
T ss_pred HHCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhccCC---------
Confidence 799999999972 233456788999999999999988 56777899999998775211
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccc
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (520)
+..+...|+.||+..|.+.+.++.+ +|+++.+++|+.+++|....-.. .... +..+...+.
T Consensus 163 ----~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~---~~~~---------~~~p~~r~~ 226 (260)
T 3un1_A 163 ----VGMPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHPAETH---STLA---------GLHPVGRMG 226 (260)
T ss_dssp ----TTCCCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSCGGGH---HHHH---------TTSTTSSCB
T ss_pred ----CCCccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCCHHHH---HHHh---------ccCCCCCCc
Confidence 2345678999999999998877655 48999999999999986543111 1111 223345678
Q ss_pred cHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC
Q 010005 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (520)
Q Consensus 226 ~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t 262 (520)
+++|+|++++.+.+ .....|++++++++...+
T Consensus 227 ~~~dva~av~~L~~-----~~~itG~~i~vdGG~~~~ 258 (260)
T 3un1_A 227 EIRDVVDAVLYLEH-----AGFITGEILHVDGGQNAG 258 (260)
T ss_dssp CHHHHHHHHHHHHH-----CTTCCSCEEEESTTGGGC
T ss_pred CHHHHHHHHHHhcc-----cCCCCCcEEEECCCeecc
Confidence 89999999998854 456789999999876543
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=195.45 Aligned_cols=209 Identities=17% Similarity=0.072 Sum_probs=160.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc----
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~---- 83 (520)
+|+||||||+|+||++++++|+++| ++|+++|+ ++. ...+.++.+|++|.+++.++++
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G-~~V~~~~r--------~~~---------~~~~~~~~~D~~~~~~~~~~~~~~~~ 63 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARG-YRVVVLDL--------RRE---------GEDLIYVEGDVTREEDVRRAVARAQE 63 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEES--------SCC---------SSSSEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEcc--------Ccc---------ccceEEEeCCCCCHHHHHHHHHHHHh
Confidence 5799999999999999999999999 59999554 322 0135889999999999998887
Q ss_pred --CCCEEEEcccCCCC-------Cc----chhhHHhhhHHHHHHHHHHHHHCC----------CCEEEEeecccccccCC
Q 010005 84 --GASTVFYVDATDLN-------TD----DFYNCYMIIVQGAKNVVTACRECK----------VRRLVYNSTADVVFDGS 140 (520)
Q Consensus 84 --~~D~Vih~aa~~~~-------~~----~~~~~~~~Nv~gt~~ll~aa~~~g----------vkr~V~~SS~~vyg~~~ 140 (520)
++|+|||+||.... .. +++..+++|+.++.++++++.... .+++|++||...+..
T Consensus 64 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~-- 141 (242)
T 1uay_A 64 EAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEG-- 141 (242)
T ss_dssp HSCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHC--
T ss_pred hCCceEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccC--
Confidence 78999999997211 11 677899999999999999987642 129999999988742
Q ss_pred CCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecC
Q 010005 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGS 217 (520)
Q Consensus 141 ~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~ 217 (520)
..+...|+.+|+..|.+.+.++.+ +|++++++||+.++++......+.+......+.+.
T Consensus 142 -------------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~----- 203 (242)
T 1uay_A 142 -------------QIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLPEKAKASLAAQVPF----- 203 (242)
T ss_dssp -------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTSCHHHHHHHHTTCCS-----
T ss_pred -------------CCCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhhccchhHHHHHHhhCCC-----
Confidence 234578999999999988776543 58999999999999975433333333333333221
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t 262 (520)
...+++++|+|++++.++. .....|+.|++.++..++
T Consensus 204 ---~~~~~~~~dva~~~~~l~~-----~~~~~G~~~~v~gG~~~~ 240 (242)
T 1uay_A 204 ---PPRLGRPEEYAALVLHILE-----NPMLNGEVVRLDGALRMA 240 (242)
T ss_dssp ---SCSCCCHHHHHHHHHHHHH-----CTTCCSCEEEESTTCCCC
T ss_pred ---cccCCCHHHHHHHHHHHhc-----CCCCCCcEEEEcCCeecC
Confidence 0347889999999999988 345678999999876543
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.5e-23 Score=201.26 Aligned_cols=230 Identities=17% Similarity=0.104 Sum_probs=157.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC-----CCCCCcEEEEecCCCHHHHH
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS-----LSSGRAEYHQVDVRDISQIK 79 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~-----~~~~~v~~~~~Dl~d~~~l~ 79 (520)
.+++++|+||||+|+||+++++.|+++| ++|+++|+.... ... ....+... ....++.++.+|++|.+++.
T Consensus 4 ~~~~k~vlITGasggiG~~la~~l~~~G-~~V~~~~r~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 79 (264)
T 2pd6_A 4 RLRSALALVTGAGSGIGRAVSVRLAGEG-ATVAACDLDRAA-AQE--TVRLLGGPGSKEGPPRGNHAAFQADVSEARAAR 79 (264)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHH-HHH--HHHTC------------CCEEEECCTTSHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCChHH-HHH--HHHHHHhcCccccccCcceEEEEecCCCHHHHH
Confidence 3467899999999999999999999999 599996654311 000 00001000 01146789999999999888
Q ss_pred HHHcC-------C-CEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHC----C-CCEEEEeecccccccC
Q 010005 80 KVLEG-------A-STVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDG 139 (520)
Q Consensus 80 ~~l~~-------~-D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~----g-vkr~V~~SS~~vyg~~ 139 (520)
+++++ + |+|||+||... ...+++..+++|+.|+.++++++... + .+++|++||...+.
T Consensus 80 ~~~~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~-- 157 (264)
T 2pd6_A 80 CLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKV-- 157 (264)
T ss_dssp HHHHHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHH--
T ss_pred HHHHHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhcc--
Confidence 87764 3 99999999722 33466788999999999999998764 4 56999999987652
Q ss_pred CCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEec
Q 010005 140 SHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIG 216 (520)
Q Consensus 140 ~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g 216 (520)
+..+...|+.+|+..|.+.+.++.+ +|++++++||+.++++......+.+...+..+
T Consensus 158 -------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~------- 217 (264)
T 2pd6_A 158 -------------GNVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKVPQKVVDKITEM------- 217 (264)
T ss_dssp -------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC----------CTGGG-------
T ss_pred -------------CCCCChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchhhcCHHHHHHHHHh-------
Confidence 1234578999999999998887654 69999999999999987543322222211111
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHH
Q 010005 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWD 265 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~e 265 (520)
.....+.+++|+|++++.++.. ......|+.++++++..++...
T Consensus 218 --~~~~~~~~~~dva~~~~~l~~~---~~~~~~G~~~~v~gg~~~~~~~ 261 (264)
T 2pd6_A 218 --IPMGHLGDPEDVADVVAFLASE---DSGYITGTSVEVTGGLFMAENL 261 (264)
T ss_dssp --CTTCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTC------
T ss_pred --CCCCCCCCHHHHHHHHHHHcCC---cccCCCCCEEEECCCceecccc
Confidence 1234578999999999988762 1234678999999987665444
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=7.7e-23 Score=201.46 Aligned_cols=237 Identities=10% Similarity=0.049 Sum_probs=158.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCC-CCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD-SLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~-~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
+++|++|||||+|+||+++++.|+++| ++|+++|+.... +.. ....+.. .....++..+.+|++|++++.++++
T Consensus 4 ~~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~-~~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (278)
T 1spx_A 4 FAEKVAIITGSSNGIGRATAVLFAREG-AKVTITGRHAER-LEE--TRQQILAAGVSEQNVNSVVADVTTDAGQDEILST 79 (278)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHH--HHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHH-HHH--HHHHHHhcccCCCceeEEecccCCHHHHHHHHHH
Confidence 457899999999999999999999999 599995543210 000 0000000 0012357889999999999888887
Q ss_pred ------CCCEEEEcccCCC-----------CCcchhhHHhhhHHHHHHHHHHHHHC----CCCEEEEeecccc-cccCCC
Q 010005 84 ------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADV-VFDGSH 141 (520)
Q Consensus 84 ------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~ll~aa~~~----gvkr~V~~SS~~v-yg~~~~ 141 (520)
++|+|||+||... ...+++..+++|+.|+.++++++... + +++|++||... +.
T Consensus 80 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~---- 154 (278)
T 1spx_A 80 TLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNISSIASGLH---- 154 (278)
T ss_dssp HHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTTSSSS----
T ss_pred HHHHcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEeccccccc----
Confidence 7999999999721 33456778999999999999988764 5 79999999876 42
Q ss_pred CCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch---HHH------HHHhcCC
Q 010005 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV---PLL------VNLAKPG 209 (520)
Q Consensus 142 ~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~---~~l------~~~~~~g 209 (520)
+..+...|+.||+..|.+.+.++.+ +|++++++||+.++++...... +.. .......
T Consensus 155 -----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (278)
T 1spx_A 155 -----------ATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKEC 223 (278)
T ss_dssp -----------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHH
T ss_pred -----------CCCCccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchhhhhhhHHHHHHHhc
Confidence 1123568999999999998877543 6899999999999988542210 000 1111110
Q ss_pred CceEEecCCCcccccccHHHHHHHHHHHHHhhhccccc-CCCceEEEeCCCCcCHHHHHHHHHHHc
Q 010005 210 WTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS-VAGMAFFITNLEPIKFWDFLSIILEGL 274 (520)
Q Consensus 210 ~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~-~~g~~yni~~~~~~t~~el~~~i~~~~ 274 (520)
.....+.+++|+|++++.++... ... ..|+.+++.++..+++.|+++.+.+.+
T Consensus 224 ---------~p~~~~~~~~dvA~~v~~l~s~~---~~~~~tG~~~~vdgG~~~~~~~~~~~~~~~~ 277 (278)
T 1spx_A 224 ---------VPAGVMGQPQDIAEVIAFLADRK---TSSYIIGHQLVVDGGSSLIMGLHCQDFAKLL 277 (278)
T ss_dssp ---------CTTSSCBCHHHHHHHHHHHHCHH---HHTTCCSCEEEESTTGGGC------------
T ss_pred ---------CCCcCCCCHHHHHHHHHHHcCcc---ccCcccCcEEEECCCcccccCcccccHHHHh
Confidence 11235789999999999887511 122 578999999999999999999988754
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-23 Score=204.82 Aligned_cols=229 Identities=14% Similarity=0.121 Sum_probs=165.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
..++|++|||||+|+||++++++|+++| ++|++.|+.. ... ...+.+ ..++..+.+|++|++++.++++
T Consensus 5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~ 74 (259)
T 4e6p_A 5 RLEGKSALITGSARGIGRAFAEAYVREG-ATVAIADIDI--------ERARQAAAEI-GPAAYAVQMDVTRQDSIDAAIA 74 (259)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHH-CTTEEEEECCTTCHHHHHHHHH
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHh-CCCceEEEeeCCCHHHHHHHHH
Confidence 3456899999999999999999999999 5999965432 100 000111 2457889999999999888876
Q ss_pred -------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHC----C-CCEEEEeecccccccCCCCCC
Q 010005 84 -------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 84 -------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~----g-vkr~V~~SS~~vyg~~~~~~~ 144 (520)
++|+|||+||.. ....+++..+++|+.|+.++++++... + -.++|++||...+.
T Consensus 75 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------- 147 (259)
T 4e6p_A 75 ATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRR------- 147 (259)
T ss_dssp HHHHHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS-------
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhcc-------
Confidence 799999999972 233566788999999999999988653 2 35899999998762
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhc---CCCceEEecCC
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAK---PGWTKFIIGSG 218 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~---~g~~~~i~g~g 218 (520)
+..+...|+.||+..|.+.+.++.+ +|+++.+++|+.+++|...... .+..... .+......+++
T Consensus 148 --------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 218 (259)
T 4e6p_A 148 --------GEALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWDGVD-ALFARYENRPRGEKKRLVGEA 218 (259)
T ss_dssp --------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHHHHH-HHHHHHHTCCTTHHHHHHHHH
T ss_pred --------CCCCChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhhhhh-hhhhhhccCChHHHHHHHhcc
Confidence 2234568999999999998887643 5899999999999998643221 1111111 12212223344
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t 262 (520)
.+...+.+++|+|++++.++.. ......|++|+++++..+|
T Consensus 219 ~p~~r~~~~~dva~~v~~L~s~---~~~~itG~~i~vdgG~~~s 259 (259)
T 4e6p_A 219 VPFGRMGTAEDLTGMAIFLASA---ESDYIVSQTYNVDGGNWMS 259 (259)
T ss_dssp STTSSCBCTHHHHHHHHHTTSG---GGTTCCSCEEEESTTSSCC
T ss_pred CCCCCCcCHHHHHHHHHHHhCC---ccCCCCCCEEEECcChhcC
Confidence 5667899999999999877641 1245679999999987653
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-22 Score=194.28 Aligned_cols=223 Identities=14% Similarity=0.079 Sum_probs=160.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++++||||||+|+||++++++|+++| ++|+++|+.... .. .....+.. ...++.++.+|++|.+++.++++
T Consensus 11 l~~k~vlItGasggiG~~la~~l~~~G-~~V~~~~r~~~~-~~--~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 84 (260)
T 3awd_A 11 LDNRVAIVTGGAQNIGLACVTALAEAG-ARVIIADLDEAM-AT--KAVEDLRM--EGHDVSSVVMDVTNTESVQNAVRSV 84 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HH--HHHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHH-HH--HHHHHHHh--cCCceEEEEecCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 599996543210 00 00000000 12468899999999998888876
Q ss_pred -----CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCCC
Q 010005 84 -----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 -----~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|+|||+||... ...++...+++|+.++.++++++.. .+..++|++||...+...
T Consensus 85 ~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------- 157 (260)
T 3awd_A 85 HEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVN------- 157 (260)
T ss_dssp HHHHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-------
T ss_pred HHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhcccC-------
Confidence 6899999999632 1233467899999999999998864 467799999998765210
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCC-Cc-hHHHHHHhcCCCceEEecCCCcc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT-QL-VPLLVNLAKPGWTKFIIGSGENM 221 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~-~~-~~~l~~~~~~g~~~~i~g~g~~~ 221 (520)
+..|...|+.+|+..|.+++.++.+ +|++++++||+.++++... .. .+.+...+..+. ..
T Consensus 158 ------~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~ 222 (260)
T 3awd_A 158 ------RPQQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFGMEKPELYDAWIAGT---------PM 222 (260)
T ss_dssp ------SSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHHHHTCHHHHHHHHHTC---------TT
T ss_pred ------CCCCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhcccCChHHHHHHHhcC---------Cc
Confidence 2234578999999999999887665 7999999999999998754 11 123333332222 23
Q ss_pred cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..+++++|+|++++.++... .....|+.|+++++.
T Consensus 223 ~~~~~~~dva~~~~~l~~~~---~~~~~G~~~~v~gg~ 257 (260)
T 3awd_A 223 GRVGQPDEVASVVQFLASDA---ASLMTGAIVNVDAGF 257 (260)
T ss_dssp SSCBCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTT
T ss_pred CCCCCHHHHHHHHHHHhCch---hccCCCcEEEECCce
Confidence 45889999999999887521 234578899998864
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.8e-24 Score=198.86 Aligned_cols=183 Identities=14% Similarity=-0.004 Sum_probs=145.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHc---C
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE---G 84 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~---~ 84 (520)
|+|+||||+|+||++++++|+++ +|+++ .|++.+. .+.+... . +++.+|++|++++.++++ +
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~---~V~~~--------~r~~~~~~~~~~~~~--~-~~~~~D~~~~~~~~~~~~~~~~ 66 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH---DLLLS--------GRRAGALAELAREVG--A-RALPADLADELEAKALLEEAGP 66 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS---EEEEE--------CSCHHHHHHHHHHHT--C-EECCCCTTSHHHHHHHHHHHCS
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC---CEEEE--------ECCHHHHHHHHHhcc--C-cEEEeeCCCHHHHHHHHHhcCC
Confidence 58999999999999999999988 78884 4443210 0000111 1 788999999999999998 8
Q ss_pred CCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCC
Q 010005 85 ASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQ 157 (520)
Q Consensus 85 ~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~ 157 (520)
+|+|||+||.. ....+++..+++|+.++.++++++++.+.+++|++||..+|. +..+.
T Consensus 67 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~sS~~~~~---------------~~~~~ 131 (207)
T 2yut_A 67 LDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQKGARAVFFGAYPRYV---------------QVPGF 131 (207)
T ss_dssp EEEEEECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHH---------------SSTTB
T ss_pred CCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcCCcEEEEEcChhhcc---------------CCCCc
Confidence 99999999972 134567889999999999999999777788999999998873 22456
Q ss_pred ChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHH
Q 010005 158 DLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234 (520)
Q Consensus 158 ~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai 234 (520)
+.|+.+|+..|.+++.++.+ +|++++++||+.++++.. .+++....++++++|+|+++
T Consensus 132 ~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~-------------------~~~~~~~~~~~~~~dva~~~ 192 (207)
T 2yut_A 132 AAYAAAKGALEAYLEAARKELLREGVHLVLVRLPAVATGLW-------------------APLGGPPKGALSPEEAARKV 192 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGG-------------------GGGTSCCTTCBCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhhhCCEEEEEecCcccCCCc-------------------cccCCCCCCCCCHHHHHHHH
Confidence 78999999999998887654 699999999999998741 11234457899999999999
Q ss_pred HHHHH
Q 010005 235 VCAAE 239 (520)
Q Consensus 235 ~~~~~ 239 (520)
+.+++
T Consensus 193 ~~~~~ 197 (207)
T 2yut_A 193 LEGLF 197 (207)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 99887
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-23 Score=207.30 Aligned_cols=234 Identities=15% Similarity=0.096 Sum_probs=168.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCC---CCCcEEEEecCCCHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLS---SGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~---~~~v~~~~~Dl~d~~~l~~~ 81 (520)
+++|+|+||||+|+||++++++|+++| ++|+++|+. ..+. ...+.+. ..++.++.+|++|.+++.++
T Consensus 24 l~~k~vlITGasggiG~~la~~L~~~G-~~V~~~~r~--------~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~ 94 (302)
T 1w6u_A 24 FQGKVAFITGGGTGLGKGMTTLLSSLG-AQCVIASRK--------MDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNT 94 (302)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESC--------HHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCC--------HHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHH
Confidence 456899999999999999999999999 599995543 2200 0000000 24688999999999988877
Q ss_pred Hc-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH-----CCCCEEEEeecccccccCCCC
Q 010005 82 LE-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE-----CKVRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 82 l~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~-----~gvkr~V~~SS~~vyg~~~~~ 142 (520)
++ ++|+|||+||.. ....+++..+++|+.++.++++++.. .+.+++|++||...+.
T Consensus 95 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~----- 169 (302)
T 1w6u_A 95 VSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET----- 169 (302)
T ss_dssp HHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH-----
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEccccccc-----
Confidence 75 469999999962 22345678999999999999888853 3457999999987763
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCC-CchH--HHHHHhcCCCceEEec
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT-QLVP--LLVNLAKPGWTKFIIG 216 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~-~~~~--~l~~~~~~g~~~~i~g 216 (520)
+..+...|+.+|+..|.+.+.++.+ +|++++++||+.+++++.. ...+ ........+.
T Consensus 170 ----------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~------ 233 (302)
T 1w6u_A 170 ----------GSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRI------ 233 (302)
T ss_dssp ----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTC------
T ss_pred ----------CCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhcccchhhHHHHHhcC------
Confidence 2234578999999999999887655 7999999999999987421 1101 1111222222
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcC
Q 010005 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLG 275 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g 275 (520)
....+.+++|+|++++.++.. ......|+.|+++++..++++|+++.+.+..|
T Consensus 234 ---p~~~~~~~~dva~~~~~l~~~---~~~~~~G~~~~v~gg~~~~~~~~~~~~~~~~g 286 (302)
T 1w6u_A 234 ---PCGRLGTVEELANLAAFLCSD---YASWINGAVIKFDGGEEVLISGEFNDLRKVTK 286 (302)
T ss_dssp ---TTSSCBCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTHHHHHHSTTGGGGGCCH
T ss_pred ---CcCCCCCHHHHHHHHHHHcCC---cccccCCCEEEECCCeeeccCCccccchhhcc
Confidence 233578899999999988751 11235789999999988888888877766544
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-22 Score=194.50 Aligned_cols=218 Identities=16% Similarity=0.101 Sum_probs=159.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
..++++||||||+|+||++++++|+++| ++|+++++. ..+ ..+.+.. .+.+.+.+|++|.+++.++++
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~--------~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~ 72 (244)
T 3d3w_A 4 FLAGRRVLVTGAGKGIGRGTVQALHATG-ARVVAVSRT--------QADLDSLVREC--PGIEPVCVDLGDWEATERALG 72 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESC--------HHHHHHHHHHS--TTCEEEECCTTCHHHHHHHHT
T ss_pred ccCCcEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCC--------HHHHHHHHHHc--CCCCEEEEeCCCHHHHHHHHH
Confidence 3457899999999999999999999999 599995543 221 0000111 246788999999999999987
Q ss_pred ---CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHC----C-CCEEEEeecccccccCCCCCCCCCC
Q 010005 84 ---GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 ---~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~----g-vkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
++|+|||+||... ...+++..+++|+.++.++.+++... + .+++|++||...+.
T Consensus 73 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~----------- 141 (244)
T 3d3w_A 73 SVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR----------- 141 (244)
T ss_dssp TCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-----------
T ss_pred HcCCCCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhcc-----------
Confidence 4799999999721 22456789999999999999888653 5 67999999988762
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc--hHHHHHHhcCCCceEEecCCCcccc
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~--~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
+..+.+.|+.||+..|.+++.++.+ +|++++++||+.++++..... .+........ +.+...
T Consensus 142 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~---------~~~~~~ 208 (244)
T 3d3w_A 142 ----AVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLN---------RIPLGK 208 (244)
T ss_dssp ----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSCSTTHHHHHHH---------TCTTCS
T ss_pred ----CCCCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhccChHHHHHHHh---------hCCCCC
Confidence 1234578999999999998887654 589999999999998753210 0111111111 123357
Q ss_pred cccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
+++++|+|++++.++.. ......|+.|+++++..
T Consensus 209 ~~~~~dva~~~~~l~~~---~~~~~~G~~~~v~gG~~ 242 (244)
T 3d3w_A 209 FAEVEHVVNAILFLLSD---RSGMTTGSTLPVEGGFW 242 (244)
T ss_dssp CBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred CcCHHHHHHHHHHHcCc---cccCCCCCEEEECCCcc
Confidence 89999999999988862 11245789999988753
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-22 Score=197.84 Aligned_cols=222 Identities=14% Similarity=0.122 Sum_probs=160.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCC---CCCcEEEEecCCCHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLS---SGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~---~~~v~~~~~Dl~d~~~l~~~ 81 (520)
.++|++|||||+|+||++++++|+++| ++|+++|+. +.+ ....+.+. ..++.++.+|++|.+++.++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~--------~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~ 75 (263)
T 3ai3_A 5 ISGKVAVITGSSSGIGLAIAEGFAKEG-AHIVLVARQ--------VDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAV 75 (263)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESC--------HHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCC--------HHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 457899999999999999999999999 599995543 221 00000000 23678899999999988888
Q ss_pred Hc-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCC
Q 010005 82 LE-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 82 l~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~ 143 (520)
++ ++|+|||+||.. ....+++..+++|+.++.++++++. +.+.+++|++||...+..
T Consensus 76 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~----- 150 (263)
T 3ai3_A 76 VESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQP----- 150 (263)
T ss_dssp HHHHHHHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC-----
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCC-----
Confidence 76 799999999972 1234567889999999999988874 456789999999988731
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchH-----------HHHHHhcCC
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-----------LLVNLAKPG 209 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~-----------~l~~~~~~g 209 (520)
..+...|+.||+..|.+.+.++.+ +|++++++||+.+++|......+ .........
T Consensus 151 ----------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (263)
T 3ai3_A 151 ----------LWYEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADE 220 (263)
T ss_dssp ----------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHHHH
T ss_pred ----------CCCcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHHhc
Confidence 134568999999999998887654 69999999999999875322111 111111110
Q ss_pred CceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC
Q 010005 210 WTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (520)
Q Consensus 210 ~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t 262 (520)
+.+...+.+++|+|++++.++.. ......|+.|+++++..++
T Consensus 221 --------~~p~~~~~~~~dvA~~~~~l~s~---~~~~~~G~~~~vdgG~~~s 262 (263)
T 3ai3_A 221 --------HAPIKRFASPEELANFFVFLCSE---RATYSVGSAYFVDGGMLKT 262 (263)
T ss_dssp --------HCTTCSCBCHHHHHHHHHHHTST---TCTTCCSCEEEESTTCCCC
T ss_pred --------CCCCCCCcCHHHHHHHHHHHcCc---cccCCCCcEEEECCCcccc
Confidence 02234688999999999988751 1133568999999887654
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=190.27 Aligned_cols=220 Identities=14% Similarity=0.088 Sum_probs=157.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
..++|++|||||+|+||++++++|.++| ++|+++|+... +. ....+.+ ..++.++.+|++|.+++.++++
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~----~~---~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~ 74 (257)
T 3tpc_A 4 QLKSRVFIVTGASSGLGAAVTRMLAQEG-ATVLGLDLKPP----AG---EEPAAEL-GAAVRFRNADVTNEADATAALAF 74 (257)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESSCC--------------------CEEEECCTTCHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCChH----HH---HHHHHHh-CCceEEEEccCCCHHHHHHHHHH
Confidence 3457899999999999999999999999 59999665431 00 0111111 3468899999999998888876
Q ss_pred ------CCCEEEEcccCCC-----------CCcchhhHHhhhHHHHHHHHHHHHHC----------CCCEEEEeeccccc
Q 010005 84 ------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC----------KVRRLVYNSTADVV 136 (520)
Q Consensus 84 ------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~ll~aa~~~----------gvkr~V~~SS~~vy 136 (520)
++|++||+||... ...+++..+++|+.|+.++++++... +..++|++||...+
T Consensus 75 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~ 154 (257)
T 3tpc_A 75 AKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAF 154 (257)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHH
T ss_pred HHHHcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhc
Confidence 7999999999731 12456778999999999999998763 34689999999876
Q ss_pred ccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceE
Q 010005 137 FDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKF 213 (520)
Q Consensus 137 g~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~ 213 (520)
. +..+...|+.||+..|.+.+.++.+ +|+++.+++||.+.++......+.......
T Consensus 155 ~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~------ 213 (257)
T 3tpc_A 155 D---------------GQIGQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAGMPQDVQDALA------ 213 (257)
T ss_dssp H---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC--------------------
T ss_pred c---------------CCCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhccCCHHHHHHHH------
Confidence 3 2234578999999999998777654 789999999999998864432222222111
Q ss_pred EecCCCcc-cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC
Q 010005 214 IIGSGENM-SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (520)
Q Consensus 214 i~g~g~~~-~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t 262 (520)
..... ..+.+++|+|+++..++. .....|+.+++.++..++
T Consensus 214 ---~~~p~~~r~~~~~dva~~v~~l~s-----~~~itG~~i~vdGG~~~~ 255 (257)
T 3tpc_A 214 ---ASVPFPPRLGRAEEYAALVKHICE-----NTMLNGEVIRLDGALRMA 255 (257)
T ss_dssp ---CCSSSSCSCBCHHHHHHHHHHHHH-----CTTCCSCEEEESTTCCC-
T ss_pred ---hcCCCCCCCCCHHHHHHHHHHHcc-----cCCcCCcEEEECCCccCC
Confidence 12222 457889999999999987 356789999999876554
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-22 Score=192.98 Aligned_cols=219 Identities=15% Similarity=0.142 Sum_probs=164.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEEecCCCHHHHHHHHc-
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
++|++|||||+|+||++++++|+++| ++|++.|+... .......+.+ ...++..+.+|++|.+++.++++
T Consensus 3 ~~k~~lVTGas~gIG~~ia~~l~~~G-~~V~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 75 (246)
T 3osu_A 3 MTKSALVTGASRGIGRSIALQLAEEG-YNVAVNYAGSK------EKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKE 75 (246)
T ss_dssp CSCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCH------HHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCCH------HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 45899999999999999999999999 58888554221 0000000000 12467889999999998888776
Q ss_pred ------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCC
Q 010005 84 ------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 ------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|++||+||.. ....+++..+++|+.|+.++++++ ++.+..++|++||...+.
T Consensus 76 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 146 (246)
T 3osu_A 76 VVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAV--------- 146 (246)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH---------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcC---------
Confidence 789999999972 133456779999999999999998 556677999999987763
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
+..+...|+.||+..|.+.+.++. .+|+++.+++|+.+.++......+........+.+ ...
T Consensus 147 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p---------~~r 211 (246)
T 3osu_A 147 ------GNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIP---------LAR 211 (246)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCSCSCHHHHHHHHTTCT---------TCS
T ss_pred ------CCCCChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCcccccCHHHHHHHHhcCC---------CCC
Confidence 223457899999999998887765 46899999999999998776665655555544433 345
Q ss_pred cccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+.+.+|+|++++.++.. ......|++++++++.
T Consensus 212 ~~~~~dva~~v~~l~s~---~~~~itG~~i~vdgG~ 244 (246)
T 3osu_A 212 FGQDTDIANTVAFLASD---KAKYITGQTIHVNGGM 244 (246)
T ss_dssp CBCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTS
T ss_pred CcCHHHHHHHHHHHhCc---cccCCCCCEEEeCCCc
Confidence 77899999999987751 1234679999998874
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-22 Score=194.54 Aligned_cols=219 Identities=15% Similarity=0.093 Sum_probs=157.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC---CCCCcEEEEecCCCHHHHHH
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL---SSGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~---~~~~v~~~~~Dl~d~~~l~~ 80 (520)
..++++|+||||+|+||++++++|+++| ++|+++++. ..+. .+.+.+ ...++..+.+|++|.+++.+
T Consensus 4 ~~~~~~vlVtGasggiG~~la~~l~~~G-~~V~~~~r~--------~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 74 (248)
T 2pnf_A 4 KLQGKVSLVTGSTRGIGRAIAEKLASAG-STVIITGTS--------GERAKAVAEEIANKYGVKAHGVEMNLLSEESINK 74 (248)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESS--------HHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCC--------hHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHH
Confidence 3467899999999999999999999999 599995543 2100 000000 12367889999999999988
Q ss_pred HHc-------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCC
Q 010005 81 VLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 81 ~l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~ 142 (520)
+++ ++|+|||+||... ...+++..+++|+.++.++.+++ ++.+.+|+|++||...+.
T Consensus 75 ~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~----- 149 (248)
T 2pnf_A 75 AFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFT----- 149 (248)
T ss_dssp HHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHH-----
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcC-----
Confidence 886 7999999999732 22356778999999997666654 456778999999986652
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGE 219 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~ 219 (520)
+..+...|+.+|...|.+.+.++.+ .|++++++||+.++++......+.+....... .
T Consensus 150 ----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~---------~ 210 (248)
T 2pnf_A 150 ----------GNVGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVLSEEIKQKYKEQ---------I 210 (248)
T ss_dssp ----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSCHHHHHHHHHT---------C
T ss_pred ----------CCCCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhhhccHHHHHHHHhc---------C
Confidence 1123568999999999988877543 58999999999999886443222222222211 1
Q ss_pred cccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
....+++++|+|++++.++... .....|+.|+++++.
T Consensus 211 ~~~~~~~~~dva~~~~~l~~~~---~~~~~G~~~~v~gg~ 247 (248)
T 2pnf_A 211 PLGRFGSPEEVANVVLFLCSEL---ASYITGEVIHVNGGM 247 (248)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTC
T ss_pred CCCCccCHHHHHHHHHHHhCch---hhcCCCcEEEeCCCc
Confidence 2346889999999999888621 134568999998763
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.1e-22 Score=190.39 Aligned_cols=219 Identities=12% Similarity=0.095 Sum_probs=149.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
+++|+||||||+|+||++++++|+++| ++|++++ .|++.. ....+.+ ...++.++.+|++|.+++.+++
T Consensus 3 l~~~~vlItGasggiG~~~a~~l~~~G-~~V~~~~-------~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 74 (247)
T 2hq1_A 3 LKGKTAIVTGSSRGLGKAIAWKLGNMG-ANIVLNG-------SPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMV 74 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEE-------CTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHH
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCC-CEEEEEc-------CcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence 356899999999999999999999999 5999852 222210 0000000 1246889999999999888877
Q ss_pred c-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCC
Q 010005 83 E-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
+ ++|+|||+||.. ....+++..+++|+.++.++.+++.. .+.+++|++||...+.
T Consensus 75 ~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~------- 147 (247)
T 2hq1_A 75 KTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGII------- 147 (247)
T ss_dssp HHHHHHHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC------------
T ss_pred HHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcc-------
Confidence 6 799999999972 23456788999999999988888764 4678999999985431
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcc
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (520)
+..+...|+.+|+..|.+.+.++.+ .|+++++++|+.+.++......+........+ ...
T Consensus 148 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~---------~~~ 210 (247)
T 2hq1_A 148 --------GNAGQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDVLPDKVKEMYLNN---------IPL 210 (247)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHTT---------STT
T ss_pred --------CCCCCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchhhcchHHHHHHHhh---------CCC
Confidence 1123568999999999998887543 48999999999998763222222222222222 223
Q ss_pred cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..+++++|+|++++.++... .....|+.|+++++.
T Consensus 211 ~~~~~~~dva~~~~~l~~~~---~~~~~G~~~~v~gG~ 245 (247)
T 2hq1_A 211 KRFGTPEEVANVVGFLASDD---SNYITGQVINIDGGL 245 (247)
T ss_dssp SSCBCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTC
T ss_pred CCCCCHHHHHHHHHHHcCcc---cccccCcEEEeCCCc
Confidence 46889999999999887621 123568999998865
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=188.43 Aligned_cols=220 Identities=15% Similarity=0.095 Sum_probs=157.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc----
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~---- 83 (520)
+|+++||||+|+||++++++|+++| ++|+++|+.... ... ....+.. ....++.++.+|++|.+++.++++
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G-~~V~~~~r~~~~-~~~--~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARG-DRVAALDLSAET-LEE--TARTHWH-AYADKVLRVRADVADEGDVNAAIAATME 76 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHH--HHHHHST-TTGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHH-HHH--HHHHHHH-hcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999999 599996543210 000 0000000 012357889999999999888876
Q ss_pred ---CCCEEEEcccCCC----------CCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCC
Q 010005 84 ---GASTVFYVDATDL----------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 ---~~D~Vih~aa~~~----------~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|+|||+||... ...+++..+++|+.++.++.+++. +.+.+++|++||...+.
T Consensus 77 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~--------- 147 (250)
T 2cfc_A 77 QFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLV--------- 147 (250)
T ss_dssp HHSCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS---------
T ss_pred HhCCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhcc---------
Confidence 7999999999722 123467789999999987766654 45778999999998763
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCC-c-hHHHHHHhcCCCceEEecCCCcc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-L-VPLLVNLAKPGWTKFIIGSGENM 221 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~-~-~~~l~~~~~~g~~~~i~g~g~~~ 221 (520)
+..+...|+.+|+..|.+.+.++.+ +|++++++||+.++++.... . .+.+...+..+. ..
T Consensus 148 ------~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~ 212 (250)
T 2cfc_A 148 ------AFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARI---------PQ 212 (250)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHHHTSHHHHHHHHTTC---------TT
T ss_pred ------CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccccCCHHHHHHHHhcC---------CC
Confidence 1234578999999999998887644 49999999999999987532 1 122333333222 22
Q ss_pred cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..+.+++|+|++++.++.. ......|+.+++.++.
T Consensus 213 ~~~~~~~dva~~~~~l~~~---~~~~~~G~~~~v~gG~ 247 (250)
T 2cfc_A 213 KEIGTAAQVADAVMFLAGE---DATYVNGAALVMDGAY 247 (250)
T ss_dssp CSCBCHHHHHHHHHHHHST---TCTTCCSCEEEESTTG
T ss_pred CCCcCHHHHHHHHHHHcCc---hhhcccCCEEEECCce
Confidence 3578999999999988761 1124568999998764
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-22 Score=195.08 Aligned_cols=220 Identities=12% Similarity=0.054 Sum_probs=160.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
+++|+||||||+|+||++++++|+++| ++|+++|+.. +... .+.+.+ ...++.++.+|++|.+++.+++
T Consensus 5 l~~k~vlVTGasggiG~~~a~~l~~~G-~~V~~~~r~~-------~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 76 (258)
T 3afn_B 5 LKGKRVLITGSSQGIGLATARLFARAG-AKVGLHGRKA-------PANIDETIASMRADGGDAAFFAADLATSEACQQLV 76 (258)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSC-------CTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEECCCc-------hhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHH
Confidence 457899999999999999999999999 5999955431 1100 000000 1236788999999999998888
Q ss_pred c-------CCCEEEEcccC-CC-------CCcchhhHHhhhHHHHHHHHHHHHH----CC--C---CEEEEeeccccccc
Q 010005 83 E-------GASTVFYVDAT-DL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK--V---RRLVYNSTADVVFD 138 (520)
Q Consensus 83 ~-------~~D~Vih~aa~-~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~----~g--v---kr~V~~SS~~vyg~ 138 (520)
+ ++|+|||+||. .. ...+++..+++|+.++.++++++.. .+ . .++|++||...+..
T Consensus 77 ~~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~ 156 (258)
T 3afn_B 77 DEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTG 156 (258)
T ss_dssp HHHHHHHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHC
T ss_pred HHHHHHcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccC
Confidence 7 79999999996 21 1234567889999999999987743 22 2 69999999877631
Q ss_pred CCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEe
Q 010005 139 GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFII 215 (520)
Q Consensus 139 ~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~ 215 (520)
+..+...|+.+|+..|.+.+.++.+ .|++++++||+.++++......+.+...+..+.
T Consensus 157 --------------~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~----- 217 (258)
T 3afn_B 157 --------------GGPGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADKTQDVRDRISNGI----- 217 (258)
T ss_dssp --------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTTCCHHHHHHHHTTC-----
T ss_pred --------------CCCCchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCcccccccccCHHHHHHHhccC-----
Confidence 1134568999999999998877543 489999999999999865544444444444332
Q ss_pred cCCCcccccccHHHHHHHHHHHHHhhhcccc-cCCCceEEEeCCC
Q 010005 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMV-SVAGMAFFITNLE 259 (520)
Q Consensus 216 g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~-~~~g~~yni~~~~ 259 (520)
....+++++|+|++++.++... .. ...|+.|+++++.
T Consensus 218 ----~~~~~~~~~dva~~~~~l~~~~---~~~~~~G~~~~v~gg~ 255 (258)
T 3afn_B 218 ----PMGRFGTAEEMAPAFLFFASHL---ASGYITGQVLDINGGQ 255 (258)
T ss_dssp ----TTCSCBCGGGTHHHHHHHHCHH---HHTTCCSEEEEESTTS
T ss_pred ----CCCcCCCHHHHHHHHHHHhCcc---hhccccCCEEeECCCc
Confidence 2347899999999999888621 12 3568999998865
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=190.31 Aligned_cols=218 Identities=16% Similarity=0.132 Sum_probs=164.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
..++|++|||||+|+||++++++|+++| ++|++.|+. .... ...+.+ ..++..+.+|++|.+++.++++
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~--------~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~ 77 (271)
T 3tzq_B 8 ELENKVAIITGACGGIGLETSRVLARAG-ARVVLADLP--------ETDLAGAAASV-GRGAVHHVVDLTNEVSVRALID 77 (271)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECT--------TSCHHHHHHHH-CTTCEEEECCTTCHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEcCC--------HHHHHHHHHHh-CCCeEEEECCCCCHHHHHHHHH
Confidence 3457899999999999999999999999 599995543 2210 000111 3467899999999998888876
Q ss_pred -------CCCEEEEcccCC-C--------CCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCC
Q 010005 84 -------GASTVFYVDATD-L--------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 84 -------~~D~Vih~aa~~-~--------~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~ 143 (520)
++|++||+||.. . ...+++..+++|+.|+.++++++ ++.+..++|++||...+.
T Consensus 78 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~------ 151 (271)
T 3tzq_B 78 FTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHA------ 151 (271)
T ss_dssp HHHHHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcC------
Confidence 789999999973 2 22345678999999999999999 677778999999998762
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCC-CchHHHHHHhcCCCceEEecCCC
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT-QLVPLLVNLAKPGWTKFIIGSGE 219 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~-~~~~~l~~~~~~g~~~~i~g~g~ 219 (520)
+..+...|+.||+..|.+.+.++.+ +|+++.+++|+.+++|... ..............
T Consensus 152 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~--------- 213 (271)
T 3tzq_B 152 ---------AYDMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEVGLPQPIVDIFATHH--------- 213 (271)
T ss_dssp ---------BCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC---CHHHHHHHHTTS---------
T ss_pred ---------CCCCChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCccccccCCHHHHHHHHhcC---------
Confidence 2234678999999999998887665 7999999999999998765 22233333333322
Q ss_pred cccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
....+..++|+|++++.++.. ......|+.+++.++.
T Consensus 214 ~~~r~~~p~dvA~~v~~L~s~---~~~~itG~~i~vdGG~ 250 (271)
T 3tzq_B 214 LAGRIGEPHEIAELVCFLASD---RAAFITGQVIAADSGL 250 (271)
T ss_dssp TTSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTT
T ss_pred CCCCCcCHHHHHHHHHHHhCc---ccCCcCCCEEEECCCc
Confidence 223467799999999988861 1245679999999873
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-22 Score=197.06 Aligned_cols=219 Identities=14% Similarity=0.128 Sum_probs=158.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++|+||||||+|+||++++++|+++| ++|+++++. +... ..+.+.+ ...++.++.+|++|.+++.+++
T Consensus 19 ~~~k~vlItGasggiG~~la~~l~~~G-~~v~~~~r~-------~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~ 90 (274)
T 1ja9_A 19 LAGKVALTTGAGRGIGRGIAIELGRRG-ASVVVNYGS-------SSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALF 90 (274)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESS-------CHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCC-------chHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHH
Confidence 346899999999999999999999999 599985541 1110 0000000 1246788999999999988888
Q ss_pred c-------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHC---CCCEEEEeecccccccCCCCCCC
Q 010005 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~---gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
+ ++|+|||+||... ...+++..+++|+.++.++++++... + +++|++||...+..
T Consensus 91 ~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~~~~------- 162 (274)
T 1ja9_A 91 DKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG-GRIILTSSIAAVMT------- 162 (274)
T ss_dssp HHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE-EEEEEECCGGGTCC-------
T ss_pred HHHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CEEEEEcChHhccC-------
Confidence 6 7899999999721 22345778999999999999998875 4 69999999987611
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCC------------Cch-HHHHHHhcCC
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT------------QLV-PLLVNLAKPG 209 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~------------~~~-~~l~~~~~~g 209 (520)
+..+...|+.+|+..|.+++.++.+ .|++++++||+.++++... ... ......
T Consensus 163 -------~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---- 231 (274)
T 1ja9_A 163 -------GIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEG---- 231 (274)
T ss_dssp -------SCCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHH----
T ss_pred -------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhcccccccccccccCchHHHHHH----
Confidence 1123568999999999998887654 4899999999999876321 000 111111
Q ss_pred CceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 210 WTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 210 ~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..++.+...+++++|+|++++.++... .....|++|+++++.
T Consensus 232 -----~~~~~~~~~~~~~~dva~~i~~l~~~~---~~~~~G~~~~v~gG~ 273 (274)
T 1ja9_A 232 -----LANMNPLKRIGYPADIGRAVSALCQEE---SEWINGQVIKLTGGG 273 (274)
T ss_dssp -----HHHTSTTSSCBCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTC
T ss_pred -----HHhcCCCCCccCHHHHHHHHHHHhCcc---cccccCcEEEecCCc
Confidence 112334567899999999999888621 123478999998863
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.8e-22 Score=193.76 Aligned_cols=218 Identities=11% Similarity=0.101 Sum_probs=145.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHH-
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL- 82 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l- 82 (520)
++|+||||||+|+||++++++|+++| ++|+++++. +.+. ...+.+ ...++..+.+|+.|.+++.+++
T Consensus 13 ~~k~vlITGasggiG~~la~~l~~~G-~~V~~~~r~--------~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 83 (266)
T 1xq1_A 13 KAKTVLVTGGTKGIGHAIVEEFAGFG-AVIHTCARN--------EYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQ 83 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESC--------HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCC--------HHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHH
Confidence 46899999999999999999999999 599995543 2100 000000 1236788999999998888777
Q ss_pred -------cCCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCC
Q 010005 83 -------EGASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 83 -------~~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
.++|+|||+||.. ....+++..+++|+.++.++++++ ++.+.+++|++||...+.
T Consensus 84 ~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~------- 156 (266)
T 1xq1_A 84 TVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVV------- 156 (266)
T ss_dssp HHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC-------------
T ss_pred HHHHHhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhcc-------
Confidence 4689999999972 123456778999999999999998 556778999999988763
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch-HHHHHHhcCCCceEEecCCCc
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-PLLVNLAKPGWTKFIIGSGEN 220 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~-~~l~~~~~~g~~~~i~g~g~~ 220 (520)
+..+...|+.+|+..|.+.+.++.+ .|++++++||+.++++...... +.+...... ...
T Consensus 157 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~---------~~~ 219 (266)
T 1xq1_A 157 --------SASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYDDEFKKVVIS---------RKP 219 (266)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC------------------------------
T ss_pred --------CCCCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhhcCHHHHHHHHh---------cCC
Confidence 1234578999999999998887654 4899999999999998654321 111111111 112
Q ss_pred ccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
...+.+++|+|++++.++.. ......|+.++++++..
T Consensus 220 ~~~~~~~~dva~~~~~l~~~---~~~~~~G~~~~v~gG~~ 256 (266)
T 1xq1_A 220 LGRFGEPEEVSSLVAFLCMP---AASYITGQTICVDGGLT 256 (266)
T ss_dssp ----CCGGGGHHHHHHHTSG---GGTTCCSCEEECCCCEE
T ss_pred CCCCcCHHHHHHHHHHHcCc---cccCccCcEEEEcCCcc
Confidence 23578999999999987751 12345689999998753
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.2e-22 Score=192.57 Aligned_cols=218 Identities=13% Similarity=0.039 Sum_probs=154.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCc-EEEEecCCCHHHHHHHH--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRA-EYHQVDVRDISQIKKVL-- 82 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v-~~~~~Dl~d~~~l~~~l-- 82 (520)
++++++||||+|+||++++++|+++| ++|+++|+ ++.+. ...+.+ ..++ ..+.+|++|.+++.+++
T Consensus 10 ~~k~vlITGasggiG~~la~~l~~~G-~~V~~~~r--------~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~ 79 (254)
T 2wsb_A 10 DGACAAVTGAGSGIGLEICRAFAASG-ARLILIDR--------EAAALDRAAQEL-GAAVAARIVADVTDAEAMTAAAAE 79 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEES--------CHHHHHHHHHHH-GGGEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeC--------CHHHHHHHHHHh-cccceeEEEEecCCHHHHHHHHHH
Confidence 45799999999999999999999999 59999554 32210 000001 1245 78999999999888776
Q ss_pred ----cCCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCCC
Q 010005 83 ----EGASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 83 ----~~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
.++|+|||+||... ...+++..+++|+.++.++.+++ ++.+.+++|++||...+...
T Consensus 80 ~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~-------- 151 (254)
T 2wsb_A 80 AEAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVN-------- 151 (254)
T ss_dssp HHHHSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--------
T ss_pred HHhhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccCC--------
Confidence 46899999999721 12345678899999977777765 45577899999999876311
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc--hHHHHHHhcCCCceEEecCCCccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~--~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
+..|.+.|+.+|+..|.+.+.++.+ .|++++++||+.++++..... .+.+........ ...
T Consensus 152 -----~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~~ 217 (254)
T 2wsb_A 152 -----RPQFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKMRERPELFETWLDMT---------PMG 217 (254)
T ss_dssp -----SSSCBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHHHTCHHHHHHHHHTS---------TTS
T ss_pred -----CCCcchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhccccChHHHHHHHhcC---------CCC
Confidence 2234578999999999998877654 489999999999998743211 012222222211 234
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.+++++|+|++++.++.. ......|+.++++++.
T Consensus 218 ~~~~~~dva~~~~~l~~~---~~~~~~G~~~~v~gG~ 251 (254)
T 2wsb_A 218 RCGEPSEIAAAALFLASP---AASYVTGAILAVDGGY 251 (254)
T ss_dssp SCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTG
T ss_pred CCCCHHHHHHHHHHHhCc---ccccccCCEEEECCCE
Confidence 688999999999988751 1234678999998763
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-21 Score=191.44 Aligned_cols=238 Identities=16% Similarity=0.105 Sum_probs=163.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCC--CCCCCCC---C--CCCCCcEEEEecCCCHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSE--SNSLLPD---S--LSSGRAEYHQVDVRDISQI 78 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~--~~~~l~~---~--~~~~~v~~~~~Dl~d~~~l 78 (520)
.++|++|||||+|+||++++++|+++| ++|+++|+.......... ....+.+ . ....++..+.+|++|.+++
T Consensus 8 l~~k~~lVTGas~gIG~a~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 86 (281)
T 3s55_A 8 FEGKTALITGGARGMGRSHAVALAEAG-ADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAAL 86 (281)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence 456899999999999999999999999 599997664211000000 0000000 0 0134678899999999988
Q ss_pred HHHHc-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCC
Q 010005 79 KKVLE-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGS 140 (520)
Q Consensus 79 ~~~l~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~ 140 (520)
.++++ ++|++||+||.. ....+++..+++|+.|+.++++++ ++.+..++|++||...+.
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--- 163 (281)
T 3s55_A 87 ESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHS--- 163 (281)
T ss_dssp HHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS---
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcC---
Confidence 88776 799999999972 233456788999999999999986 345567999999988762
Q ss_pred CCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchH--HHHHHhcCCCc----
Q 010005 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP--LLVNLAKPGWT---- 211 (520)
Q Consensus 141 ~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~--~l~~~~~~g~~---- 211 (520)
+..+...|+.||+..|.+.+.++.+ +|+++.+++|+.+++|....... .+.........
T Consensus 164 ------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (281)
T 3s55_A 164 ------------ANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVE 231 (281)
T ss_dssp ------------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSHHHHHC-------CCHHHHH
T ss_pred ------------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccchhhhccccccccccchhHHH
Confidence 2234578999999999998887654 58999999999999987543110 00000000000
Q ss_pred eEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC
Q 010005 212 KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (520)
Q Consensus 212 ~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t 262 (520)
......+.....+.+++|+|++++.++.. ......|+++++.++...+
T Consensus 232 ~~~~~~~~~~~~~~~p~dvA~~v~~L~s~---~~~~itG~~i~vdgG~~~~ 279 (281)
T 3s55_A 232 SVFASLHLQYAPFLKPEEVTRAVLFLVDE---ASSHITGTVLPIDAGATAR 279 (281)
T ss_dssp HHHHHHCSSSCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGGGG
T ss_pred HHHHhhhccCcCCCCHHHHHHHHHHHcCC---cccCCCCCEEEECCCcccC
Confidence 00001122236789999999999988862 1234679999999886543
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.3e-22 Score=191.33 Aligned_cols=217 Identities=12% Similarity=0.091 Sum_probs=152.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEE-EEecCCCHHHHHHHHc
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEY-HQVDVRDISQIKKVLE 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~-~~~Dl~d~~~l~~~l~ 83 (520)
+|+|+||||+|+||++++++|+++| ++|++++ .|+..+. .+.+.+ ...++.. +.+|++|.+++.++++
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G-~~v~~~~-------~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDG-FALAIHY-------GQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVH 72 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTT-CEEEEEE-------SSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEc-------CCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHH
Confidence 3789999999999999999999999 5888841 3332210 000000 1234566 8999999998887764
Q ss_pred -------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHH----HHHHHHCCCCEEEEeecccccccCCCCCCC
Q 010005 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNV----VTACRECKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~l----l~aa~~~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|+|||+||... ...+++..+++|+.++.++ ++++++.+.+|+|++||...+..
T Consensus 73 ~~~~~~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~------- 145 (245)
T 2ph3_A 73 QAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILG------- 145 (245)
T ss_dssp HHHHHHTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC-------
T ss_pred HHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhccC-------
Confidence 7999999999732 2345678899999995555 45555667889999999876521
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
..+...|+.+|+..|.+.+.++.+ .|++++++||+.++++......+........+. ...
T Consensus 146 --------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~---------~~~ 208 (245)
T 2ph3_A 146 --------NPGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTERLPQEVKEAYLKQI---------PAG 208 (245)
T ss_dssp --------CSSBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHHTC---------TTC
T ss_pred --------CCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchhhcCHHHHHHHHhcC---------CCC
Confidence 123468999999999888877543 489999999999998753322222222222211 234
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.+++++|+|++++.++.. ......|+.|+++++.
T Consensus 209 ~~~~~~dva~~~~~l~~~---~~~~~~G~~~~v~gg~ 242 (245)
T 2ph3_A 209 RFGRPEEVAEAVAFLVSE---KAGYITGQTLCVDGGL 242 (245)
T ss_dssp SCBCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTC
T ss_pred CCcCHHHHHHHHHHHhCc---ccccccCCEEEECCCC
Confidence 688999999999988762 1123568999998864
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-21 Score=190.73 Aligned_cols=218 Identities=12% Similarity=0.046 Sum_probs=157.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
.++|++|||||+|+||++++++|+++| ++|+++|+.. .+ ....+.+. .++..+.+|++|.+++.++++
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~~-~~~~~~~~D~~d~~~v~~~~~~ 79 (263)
T 3ak4_A 10 LSGRKAIVTGGSKGIGAAIARALDKAG-ATVAIADLDV--------MAAQAVVAGLE-NGGFAVEVDVTKRASVDAAMQK 79 (263)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHTCT-TCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHHh-cCCeEEEEeCCCHHHHHHHHHH
Confidence 346899999999999999999999999 5999955432 10 00001111 257889999999999888876
Q ss_pred ------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHH----CC-CCEEEEeecccccccCCCCCCC
Q 010005 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~----~g-vkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|+|||+||... ...+++..+++|+.++.++.+++.. .+ ..++|++||...+.
T Consensus 80 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------- 151 (263)
T 3ak4_A 80 AIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKV-------- 151 (263)
T ss_dssp HHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS--------
T ss_pred HHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccc--------
Confidence 7999999999721 2235677999999999999988764 34 57999999987752
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch-----------HHHHHHhcCCCc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-----------PLLVNLAKPGWT 211 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~-----------~~l~~~~~~g~~ 211 (520)
+..+...|+.+|+..|.+.+.++.+ +|++++++||+.++++...... +.......
T Consensus 152 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---- 220 (263)
T 3ak4_A 152 -------GAPLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYV---- 220 (263)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHHHHHHHHHHHHTSCHHHHHHHHH----
T ss_pred -------CCCCchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhhhhhccccccccccCcHHHHHHHH----
Confidence 1124568999999999988877543 5899999999999987422111 11111111
Q ss_pred eEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 212 KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 212 ~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
+..+...+++++|+|++++.++.. ......|+.++++++..
T Consensus 221 -----~~~p~~~~~~~~dvA~~v~~l~s~---~~~~~tG~~~~vdgG~~ 261 (263)
T 3ak4_A 221 -----SLTPLGRIEEPEDVADVVVFLASD---AARFMTGQGINVTGGVR 261 (263)
T ss_dssp -----HTCTTCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESSSSS
T ss_pred -----hcCCCCCCcCHHHHHHHHHHHhCc---cccCCCCCEEEECcCEe
Confidence 112334688999999999988862 11346789999998754
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-21 Score=190.38 Aligned_cols=223 Identities=13% Similarity=0.101 Sum_probs=157.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
+++|++|||||+|+||++++++|+++| ++|+++|+.. ......+.+. . .++.+|++|.+++.++++
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~--~-~~~~~D~~~~~~~~~~~~~~ 71 (256)
T 2d1y_A 4 FAGKGVLVTGGARGIGRAIAQAFAREG-ALVALCDLRP--------EGKEVAEAIG--G-AFFQVDLEDERERVRFVEEA 71 (256)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESST--------THHHHHHHHT--C-EEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCh--------hHHHHHHHhh--C-CEEEeeCCCHHHHHHHHHHH
Confidence 457899999999999999999999999 5999955432 2111111111 3 788999999988887765
Q ss_pred -----CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|+|||+||... ...+++..+++|+.++.++++++.. .+.+++|++||...+.
T Consensus 72 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~---------- 141 (256)
T 2d1y_A 72 AYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLF---------- 141 (256)
T ss_dssp HHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS----------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccC----------
Confidence 6899999999721 2234578999999999999888753 4678999999987652
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHH-hcCCCceEEecCCCcccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNL-AKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~-~~~g~~~~i~g~g~~~~~ 223 (520)
+..+...|+.||+..|.+.+.++.+ +|+++++++|+.+.++. ...+... ...........+..+...
T Consensus 142 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (256)
T 2d1y_A 142 -----AEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEA----VLEAIALSPDPERTRRDWEDLHALRR 212 (256)
T ss_dssp -----BCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH----HHHHHC--------CHHHHTTSTTSS
T ss_pred -----CCCCChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCch----hhhccccccCCHHHHHHHHhcCCCCC
Confidence 1123568999999999998877543 58999999999998652 1111000 001111011123334567
Q ss_pred cccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC
Q 010005 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t 262 (520)
+++++|+|++++.++... .....|+.+++.++...+
T Consensus 213 ~~~~~dvA~~~~~l~s~~---~~~~~G~~~~v~gG~~~~ 248 (256)
T 2d1y_A 213 LGKPEEVAEAVLFLASEK---ASFITGAILPVDGGMTAS 248 (256)
T ss_dssp CBCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTGGGB
T ss_pred CcCHHHHHHHHHHHhCch---hcCCCCCEEEECCCcccc
Confidence 899999999999888621 124678999999886544
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-21 Score=190.38 Aligned_cols=214 Identities=15% Similarity=0.116 Sum_probs=156.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
..++|+||||||+|+||++++++|+++| ++|+++|+.. .+. ...+.+ ..++..+.+|++|++++.++++
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~ 73 (260)
T 1nff_A 4 RLTGKVALVSGGARGMGASHVRAMVAEG-AKVVFGDILD--------EEGKAMAAEL-ADAARYVHLDVTQPAQWKAAVD 73 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHT-GGGEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHh-hcCceEEEecCCCHHHHHHHHH
Confidence 3567899999999999999999999999 5999955432 110 000111 1237789999999999888887
Q ss_pred -------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHH----HHHCCCCEEEEeecccccccCCCCCCC
Q 010005 84 -------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 -------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~a----a~~~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|+|||+||.. ....+++..+++|+.|+.++.++ +++.+.+++|++||...+..
T Consensus 74 ~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------- 146 (260)
T 1nff_A 74 TAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAG------- 146 (260)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC-------
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcCC-------
Confidence 799999999972 12345677999999999666555 45567789999999987631
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
..+...|+.+|+..|.+.+.++.+ +|++++++||+.++++... . .... .. .....
T Consensus 147 --------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~-~--------~~~~-~~----~~~~~ 204 (260)
T 1nff_A 147 --------TVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTD-W--------VPED-IF----QTALG 204 (260)
T ss_dssp --------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGT-T--------SCTT-CS----CCSSS
T ss_pred --------CCCchhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCccc-c--------chhh-HH----hCccC
Confidence 123468999999999998877654 6999999999999988532 1 0001 00 12234
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
.+.+++|+|++++.++.. ......|+.|+++++..
T Consensus 205 ~~~~~~dvA~~v~~l~s~---~~~~~~G~~~~v~gG~~ 239 (260)
T 1nff_A 205 RAAEPVEVSNLVVYLASD---ESSYSTGAEFVVDGGTV 239 (260)
T ss_dssp SCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred CCCCHHHHHHHHHHHhCc---cccCCcCCEEEECCCee
Confidence 678999999999988762 12345689999998754
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=188.37 Aligned_cols=218 Identities=13% Similarity=0.106 Sum_probs=155.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
.++++||||||+|+||+++++.|+++| ++|++.|+. ..+ ..+.+.+ ..++.++.+|++|.+++.++++
T Consensus 12 ~~~k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~--------~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~ 81 (249)
T 3f9i_A 12 LTGKTSLITGASSGIGSAIARLLHKLG-SKVIISGSN--------EEKLKSLGNAL-KDNYTIEVCNLANKEECSNLISK 81 (249)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESC--------HHHHHHHHHHH-CSSEEEEECCTTSHHHHHHHHHT
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEcCC--------HHHHHHHHHHh-ccCccEEEcCCCCHHHHHHHHHh
Confidence 457899999999999999999999999 599995543 220 0000111 2367889999999999999887
Q ss_pred --CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCCCCCc
Q 010005 84 --GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDETL 150 (520)
Q Consensus 84 --~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~ 150 (520)
++|+|||+||.. ....+++..+++|+.++.++.+++. +.+..++|++||...+.
T Consensus 82 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------- 148 (249)
T 3f9i_A 82 TSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIA------------- 148 (249)
T ss_dssp CSCCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC---------------
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhcc-------------
Confidence 589999999972 3446778999999999999988874 34567999999988763
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccH
Q 010005 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (520)
Q Consensus 151 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v 227 (520)
+..+...|+.||+..|.+.+.++.+ +|+++.+++||.+.++......+........ +.+...+.++
T Consensus 149 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 217 (249)
T 3f9i_A 149 --GNPGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKLNEKQREAIVQ---------KIPLGTYGIP 217 (249)
T ss_dssp --CCSCSHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC------CCHHHHHHHHH---------HCTTCSCBCH
T ss_pred --CCCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCcccccCHHHHHHHHh---------cCCCCCCcCH
Confidence 2234578999999999888877543 6899999999999988655443333332222 2234568889
Q ss_pred HHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 228 ~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
+|+|+++..++.. ......|+.++++++..
T Consensus 218 ~dva~~~~~l~s~---~~~~~tG~~~~vdgG~~ 247 (249)
T 3f9i_A 218 EDVAYAVAFLASN---NASYITGQTLHVNGGML 247 (249)
T ss_dssp HHHHHHHHHHHSG---GGTTCCSCEEEESTTSS
T ss_pred HHHHHHHHHHcCC---ccCCccCcEEEECCCEe
Confidence 9999999988862 12346799999998753
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-22 Score=198.30 Aligned_cols=241 Identities=14% Similarity=0.123 Sum_probs=173.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC-CCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~-~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
.++|++|||||+|+||++++++|+++| ++|+++|+.... .. .....+.... ...++.++.+|++|++++.++++
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~-~~--~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 84 (281)
T 3svt_A 9 FQDRTYLVTGGGSGIGKGVAAGLVAAG-ASVMIVGRNPDK-LA--GAVQELEALGANGGAIRYEPTDITNEDETARAVDA 84 (281)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HH--HHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHH-HH--HHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHH
Confidence 456899999999999999999999999 599996553210 00 0000111100 11267889999999998887775
Q ss_pred ------CCCEEEEcccC-C-------CCCcchhhHHhhhHHHHHHHHHHHHHC----CCCEEEEeecccccccCCCCCCC
Q 010005 84 ------GASTVFYVDAT-D-------LNTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 ------~~D~Vih~aa~-~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~----gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|++||+||. . ....+++..+++|+.|+.++++++... +-.++|++||...+.
T Consensus 85 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------- 156 (281)
T 3svt_A 85 VTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASN-------- 156 (281)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHS--------
T ss_pred HHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcC--------
Confidence 58999999996 1 223455778999999999999988654 345999999998872
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc--hHHHHHHhcCCCceEEecCCCc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGEN 220 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~--~~~l~~~~~~g~~~~i~g~g~~ 220 (520)
+..+...|+.||+..|.+.+.++.+ +|+++.+++|+.++++..... .+......... ..
T Consensus 157 -------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~---------~p 220 (281)
T 3svt_A 157 -------THRWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAITESAELSSDYAMC---------TP 220 (281)
T ss_dssp -------CCTTCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHHH---------CS
T ss_pred -------CCCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcccCHHHHHHHHhc---------CC
Confidence 2234678999999999998877643 579999999999998753211 11112222111 22
Q ss_pred ccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC-HHHHHHHHHHHcCCC
Q 010005 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK-FWDFLSIILEGLGYQ 277 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t-~~el~~~i~~~~g~~ 277 (520)
...+.+++|+|++++.++.. ......|+.+++.++..++ ..|+++.+.+.+|.+
T Consensus 221 ~~r~~~~~dva~~~~~l~s~---~~~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~ 275 (281)
T 3svt_A 221 LPRQGEVEDVANMAMFLLSD---AASFVTGQVINVDGGQMLRRGPDFSAMLEPVFGRD 275 (281)
T ss_dssp SSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGGGSCCCCCHHHHHHHHCTT
T ss_pred CCCCCCHHHHHHHHHHHhCc---ccCCCCCCEEEeCCChhcccCCcchhccccccCCc
Confidence 34567899999999988762 1234579999999988776 788888888888865
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=188.77 Aligned_cols=217 Identities=14% Similarity=0.097 Sum_probs=157.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
+++|+|+||||+|+||++++++|+++| ++|+++|+ +..+. ...+.+ ..++.++.+|++|.+++.++++
T Consensus 10 ~~~k~vlVTGasggiG~~~a~~l~~~G-~~V~~~~r--------~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~ 79 (265)
T 2o23_A 10 VKGLVAVITGGASGLGLATAERLVGQG-ASAVLLDL--------PNSGGEAQAKKL-GNNCVFAPADVTSEKDVQTALAL 79 (265)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEEC--------TTSSHHHHHHHH-CTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeC--------CcHhHHHHHHHh-CCceEEEEcCCCCHHHHHHHHHH
Confidence 346899999999999999999999999 59999554 32210 000111 2468899999999999888887
Q ss_pred ------CCCEEEEcccCCC-------------CCcchhhHHhhhHHHHHHHHHHHHHC----------CCCEEEEeeccc
Q 010005 84 ------GASTVFYVDATDL-------------NTDDFYNCYMIIVQGAKNVVTACREC----------KVRRLVYNSTAD 134 (520)
Q Consensus 84 ------~~D~Vih~aa~~~-------------~~~~~~~~~~~Nv~gt~~ll~aa~~~----------gvkr~V~~SS~~ 134 (520)
++|+|||+||... ...++...+++|+.++.++++++... +..++|++||..
T Consensus 80 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~ 159 (265)
T 2o23_A 80 AKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVA 159 (265)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTH
T ss_pred HHHHCCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChh
Confidence 7999999999721 22356788999999999999998765 667999999998
Q ss_pred ccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCc
Q 010005 135 VVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT 211 (520)
Q Consensus 135 vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~ 211 (520)
.+. +..+...|+.+|+..|.+.+.++.+ .|+++++++|+.+.++......+.........
T Consensus 160 ~~~---------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~-- 222 (265)
T 2o23_A 160 AFE---------------GQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPEKVCNFLASQ-- 222 (265)
T ss_dssp HHH---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC----------CHHHHT--
T ss_pred hcC---------------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCccccccCHHHHHHHHHc--
Confidence 763 1234568999999999888776543 58999999999998875432111111111111
Q ss_pred eEEecCCCcc-cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 212 KFIIGSGENM-SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 212 ~~i~g~g~~~-~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
... ..+++++|+|++++.+++ .+...|+.+++.++..+
T Consensus 223 -------~~~~~~~~~~~dva~~~~~l~~-----~~~~~G~~i~vdgG~~~ 261 (265)
T 2o23_A 223 -------VPFPSRLGDPAEYAHLVQAIIE-----NPFLNGEVIRLDGAIRM 261 (265)
T ss_dssp -------CSSSCSCBCHHHHHHHHHHHHH-----CTTCCSCEEEESTTCCC
T ss_pred -------CCCcCCCCCHHHHHHHHHHHhh-----cCccCceEEEECCCEec
Confidence 111 347889999999999887 45678999999887643
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=192.43 Aligned_cols=233 Identities=14% Similarity=0.169 Sum_probs=158.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
.+++|++|||||+|+||++++++|+++| ++|++.|+......... ...+. .....++.++.+|++|.+++.++++
T Consensus 22 ~l~~k~~lVTGas~GIG~~ia~~la~~G-~~V~~~~r~~~~~~~~~--~~~~~-~~~~~~~~~~~~Dv~d~~~v~~~~~~ 97 (281)
T 3v2h_A 22 SMMTKTAVITGSTSGIGLAIARTLAKAG-ANIVLNGFGAPDEIRTV--TDEVA-GLSSGTVLHHPADMTKPSEIADMMAM 97 (281)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEECCCCHHHHHHH--HHHHH-TTCSSCEEEECCCTTCHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCChHHHHHH--HHHHh-hccCCcEEEEeCCCCCHHHHHHHHHH
Confidence 3456899999999999999999999999 59999554210000000 00000 0113468889999999998888776
Q ss_pred ------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCC
Q 010005 84 ------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 ------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|++||+||.. ....+++..+++|+.|+.++++++ ++.+..++|++||...+.
T Consensus 98 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--------- 168 (281)
T 3v2h_A 98 VADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLV--------- 168 (281)
T ss_dssp HHHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS---------
T ss_pred HHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCccccc---------
Confidence 689999999982 133456788999999999999997 455667999999987762
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHH--hcCCC-ceEEecCCCc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNL--AKPGW-TKFIIGSGEN 220 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~--~~~g~-~~~i~g~g~~ 220 (520)
+..+...|+.||+..|.+.+.++.+ +|+++.+++||.+.++......+..... ..... ......++.+
T Consensus 169 ------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 242 (281)
T 3v2h_A 169 ------ASPFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVMLKGQP 242 (281)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC----------------------------CCT
T ss_pred ------CCCCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhhcchhhhhcCCCHHHHHHHHHHhcCC
Confidence 2234568999999999998877543 5899999999999988644322211110 00000 0112345567
Q ss_pred ccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
...+.+++|+|++++.++.. ......|+.+++.++.
T Consensus 243 ~~r~~~~edvA~~v~~L~s~---~a~~itG~~i~vdGG~ 278 (281)
T 3v2h_A 243 TKKFITVEQVASLALYLAGD---DAAQITGTHVSMDGGW 278 (281)
T ss_dssp TCSCBCHHHHHHHHHHHHSS---GGGGCCSCEEEESTTG
T ss_pred CCCccCHHHHHHHHHHHcCC---CcCCCCCcEEEECCCc
Confidence 78899999999999988751 1234689999998874
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=182.61 Aligned_cols=219 Identities=13% Similarity=0.048 Sum_probs=149.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
+++|++|||||+|+||+++++.|+++| ++|+++|+. ... . ..++..+.+|++|.+++.++++
T Consensus 5 l~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~--------~~~---~----~~~~~~~~~D~~d~~~~~~~~~~~ 68 (250)
T 2fwm_X 5 FSGKNVWVTGAGKGIGYATALAFVEAG-AKVTGFDQA--------FTQ---E----QYPFATEVMDVADAAQVAQVCQRL 68 (250)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESC--------CCS---S----CCSSEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCc--------hhh---h----cCCceEEEcCCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 599995543 221 1 1137889999999999888876
Q ss_pred -----CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|+|||+||... ...+++..+++|+.++.++++++ ++.+.+++|++||...+.
T Consensus 69 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~---------- 138 (250)
T 2fwm_X 69 LAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHT---------- 138 (250)
T ss_dssp HHHCSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS----------
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCC----------
Confidence 6899999999721 23467789999999999999988 455678999999998762
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch-H-HHHH-HhcCCCceEEecCCCcc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-P-LLVN-LAKPGWTKFIIGSGENM 221 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~-~-~l~~-~~~~g~~~~i~g~g~~~ 221 (520)
+..+...|+.+|+..|.+.+.++.+ +|++++++||+.++++...... + .... ...... .........
T Consensus 139 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~ 211 (250)
T 2fwm_X 139 -----PRIGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFG--EQFKLGIPL 211 (250)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------------------------------
T ss_pred -----CCCCCchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCccccccccChhHHHHHHhhhh--hcccccCCC
Confidence 2234578999999999998887543 5899999999999988543211 0 0000 000000 000001223
Q ss_pred cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
..+.+++|+|++++.++.. ......|+.+++.++..
T Consensus 212 ~~~~~p~dvA~~v~~l~s~---~~~~~tG~~i~vdGG~~ 247 (250)
T 2fwm_X 212 GKIARPQEIANTILFLASD---LASHITLQDIVVDGGST 247 (250)
T ss_dssp ----CHHHHHHHHHHHHSG---GGTTCCSCEEEESTTTT
T ss_pred CCCcCHHHHHHHHHHHhCc---cccCCCCCEEEECCCcc
Confidence 3578899999999988862 12346789999988754
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-21 Score=188.48 Aligned_cols=218 Identities=15% Similarity=0.074 Sum_probs=157.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHHc-
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
+|+|+||||+|+||++++++|+++| ++|++++ .|++... .+.+.+ ...++..+.+|++|.+++.++++
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G-~~v~~~~-------~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 72 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAG-CKVLVNY-------ARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKT 72 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEE-------SSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEc-------CCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHH
Confidence 3789999999999999999999999 5888731 2332100 000000 02357889999999999888886
Q ss_pred ------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCCC
Q 010005 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|+|||+||... ...+++..+++|+.++.++++++.. .+.+|+|++||...+.
T Consensus 73 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~--------- 143 (244)
T 1edo_A 73 AIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLI--------- 143 (244)
T ss_dssp HHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH---------
T ss_pred HHHHcCCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcC---------
Confidence 6899999999722 2245677899999999999998865 3678999999987652
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
+..+...|+.+|...|.+.+.++.+ .|++++++||+.++++......+.......... ....
T Consensus 144 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~---------~~~~ 208 (244)
T 1edo_A 144 ------GNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTI---------PLGR 208 (244)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCHHHHHHHHTSC---------TTCS
T ss_pred ------CCCCCccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhhhcChHHHHHHhhcC---------CCCC
Confidence 1124568999999999888776543 689999999999998753332233333322221 2245
Q ss_pred cccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+++++|+|++++.++... ......|+.|+++++.
T Consensus 209 ~~~~~dva~~~~~l~~~~--~~~~~~G~~~~v~gG~ 242 (244)
T 1edo_A 209 TGQPENVAGLVEFLALSP--AASYITGQAFTIDGGI 242 (244)
T ss_dssp CBCHHHHHHHHHHHHHCS--GGGGCCSCEEEESTTT
T ss_pred CCCHHHHHHHHHHHhCCC--ccCCcCCCEEEeCCCc
Confidence 889999999999888411 1234578999998864
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-21 Score=188.95 Aligned_cols=220 Identities=14% Similarity=0.088 Sum_probs=157.5
Q ss_pred CCCCCCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHH
Q 010005 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 1 m~~~~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (520)
|....+++|+||||||+|+||+++++.|+++| ++|+++|+ ++.. ..++..+.+|++|.+++.+
T Consensus 1 m~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r--------~~~~--------~~~~~~~~~Dl~~~~~v~~ 63 (264)
T 2dtx_A 1 MGFSDLRDKVVIVTGASMGIGRAIAERFVDEG-SKVIDLSI--------HDPG--------EAKYDHIECDVTNPDQVKA 63 (264)
T ss_dssp -CCGGGTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEES--------SCCC--------SCSSEEEECCTTCHHHHHH
T ss_pred CCccccCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEec--------Cccc--------CCceEEEEecCCCHHHHHH
Confidence 44444567899999999999999999999999 59999544 3221 2357899999999998888
Q ss_pred HHc-------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCC
Q 010005 81 VLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 81 ~l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~ 142 (520)
+++ ++|+|||+||... ...+++..+++|+.|+.++++++.. .+.+++|++||...+.
T Consensus 64 ~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~----- 138 (264)
T 2dtx_A 64 SIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASI----- 138 (264)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTS-----
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhcc-----
Confidence 776 6999999999721 3346778999999999999888864 4567999999998763
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCCCC--ceEEEEecCccccCCCCCchHHHHHHhc--CC----CceEE
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDG--LLTCALRPSNVFGPGDTQLVPLLVNLAK--PG----WTKFI 214 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g--i~~~ilRp~~vyGp~~~~~~~~l~~~~~--~g----~~~~i 214 (520)
+..+...|+.||+..|.+.+.++.+.+ +++++++|+.+.++.. ..+..... .. .....
T Consensus 139 ----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~~~----~~~~~~~~~~~~~~~~~~~~~ 204 (264)
T 2dtx_A 139 ----------ITKNASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPLV----RKAAELEVGSDPMRIEKKISE 204 (264)
T ss_dssp ----------CCTTBHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCSHHH----HHHHHHHHCSCHHHHHHHHHH
T ss_pred ----------CCCCchhHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCcch----hhhhhcccccCchhhHHHHHH
Confidence 123456899999999999887764322 9999999999976531 11110000 00 00000
Q ss_pred ecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..+..+...+++++|+|++++.++.. ......|+.+++.++.
T Consensus 205 ~~~~~p~~~~~~p~dvA~~v~~l~s~---~~~~~tG~~i~vdGG~ 246 (264)
T 2dtx_A 205 WGHEHPMQRIGKPQEVASAVAFLASR---EASFITGTCLYVDGGL 246 (264)
T ss_dssp HHHHSTTSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTG
T ss_pred HHhcCCCCCCcCHHHHHHHHHHHhCc---hhcCCCCcEEEECCCc
Confidence 01112234688999999999988761 1234678999998864
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=190.41 Aligned_cols=224 Identities=14% Similarity=0.185 Sum_probs=162.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
.++++++||||+|+||++++++|+++| ++|+++++.... ....+.+.. ...++.++.+|++|.+++.++++
T Consensus 5 ~~~k~vlVTGas~gIG~~~a~~l~~~G-~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 77 (264)
T 3i4f_A 5 RFVRHALITAGTKGLGKQVTEKLLAKG-YSVTVTYHSDTT------AMETMKETYKDVEERLQFVQADVTKKEDLHKIVE 77 (264)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHH------HHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHH
T ss_pred cccCEEEEeCCCchhHHHHHHHHHHCC-CEEEEEcCCChH------HHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 456899999999999999999999999 588885432210 000000000 12468899999999999888876
Q ss_pred -------CCCEEEEcccC---------CCCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCC
Q 010005 84 -------GASTVFYVDAT---------DLNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 84 -------~~D~Vih~aa~---------~~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~ 143 (520)
++|+|||+||. .....+++..+++|+.++.++++++ ++.+..++|++||.+.++..
T Consensus 78 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~---- 153 (264)
T 3i4f_A 78 EAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSAP---- 153 (264)
T ss_dssp HHHHHHSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTTGGGCC----
T ss_pred HHHHHhCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeechhcccC----
Confidence 78999999993 1223456788999999999999998 66677899999998664211
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCc
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~ 220 (520)
+..+...|+.+|+..|.+.+.++.+ +|+++.+++||.++++......+......... ..
T Consensus 154 ---------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~---------~p 215 (264)
T 3i4f_A 154 ---------GWIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKEATIQEARQLKEHN---------TP 215 (264)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGSCCHHHHHHC---------------
T ss_pred ---------CCCCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccchhccHHHHHHHhhc---------CC
Confidence 2235678999999999998877654 68999999999999987666555444332222 22
Q ss_pred ccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
...+.+++|+|++++.++.. ......|+++++.++-..
T Consensus 216 ~~r~~~~~dva~~v~~l~s~---~~~~itG~~i~vdGG~~~ 253 (264)
T 3i4f_A 216 IGRSGTGEDIARTISFLCED---DSDMITGTIIEVTGAVDV 253 (264)
T ss_dssp --CCCCHHHHHHHHHHHHSG---GGTTCCSCEEEESCSCCC
T ss_pred CCCCcCHHHHHHHHHHHcCc---ccCCCCCcEEEEcCceee
Confidence 34577899999999988862 123467999999987643
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-21 Score=189.57 Aligned_cols=215 Identities=16% Similarity=0.077 Sum_probs=153.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++|+||||||+|+||+++++.|+++| ++|+++|+. ..+ ..+.+...++.++.+|++|.+++.++++
T Consensus 25 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~--------~~~--~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 93 (260)
T 3gem_A 25 LSSAPILITGASQRVGLHCALRLLEHG-HRVIISYRT--------EHA--SVTELRQAGAVALYGDFSCETGIMAFIDLL 93 (260)
T ss_dssp --CCCEEESSTTSHHHHHHHHHHHHTT-CCEEEEESS--------CCH--HHHHHHHHTCEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCC--------hHH--HHHHHHhcCCeEEECCCCCHHHHHHHHHHH
Confidence 346899999999999999999999999 589995543 221 1111112247899999999998887775
Q ss_pred -----CCCEEEEcccCCC------CCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCCCCC
Q 010005 84 -----GASTVFYVDATDL------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 -----~~D~Vih~aa~~~------~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
++|++||+||... ...++...+++|+.|+.++.+++.. .+..++|++||...+.
T Consensus 94 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~----------- 162 (260)
T 3gem_A 94 KTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRK----------- 162 (260)
T ss_dssp HHHCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGT-----------
T ss_pred HHhcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcC-----------
Confidence 5899999999721 1133457899999999999998854 4567999999988762
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcCCC--CceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccccccc
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY 226 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~ 226 (520)
+..+...|+.||+..|.+.+.++.+. ++++.+++||.+.++.... +........ ......+..
T Consensus 163 ----~~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~~~~--~~~~~~~~~---------~~p~~r~~~ 227 (260)
T 3gem_A 163 ----GSSKHIAYCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQPKDD--AAYRANALA---------KSALGIEPG 227 (260)
T ss_dssp ----CCSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC--------------------------CCSCCCCC
T ss_pred ----CCCCcHhHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCCCCC--HHHHHHHHh---------cCCCCCCCC
Confidence 22345789999999999888776442 5999999999998764321 111111111 122334566
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC
Q 010005 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (520)
Q Consensus 227 v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t 262 (520)
++|+|++++.+++ .....|+++++.++..++
T Consensus 228 ~edva~~v~~L~~-----~~~itG~~i~vdGG~~~~ 258 (260)
T 3gem_A 228 AEVIYQSLRYLLD-----STYVTGTTLTVNGGRHVK 258 (260)
T ss_dssp THHHHHHHHHHHH-----CSSCCSCEEEESTTTTTC
T ss_pred HHHHHHHHHHHhh-----CCCCCCCEEEECCCcccC
Confidence 9999999999986 467889999999987654
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=190.10 Aligned_cols=225 Identities=18% Similarity=0.174 Sum_probs=162.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++|++|||||+|+||++++++|.++| ++|++.|+.... +. .....+.+ ....++..+.+|++|++++.++++
T Consensus 8 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~-~~--~~~~~l~~-~~~~~~~~~~~Dv~~~~~v~~~~~~~ 82 (262)
T 3pk0_A 8 LQGRSVVVTGGTKGIGRGIATVFARAG-ANVAVAGRSTAD-ID--ACVADLDQ-LGSGKVIGVQTDVSDRAQCDALAGRA 82 (262)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHH-HH--HHHHHHHT-TSSSCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHH-HH--HHHHHHHh-hCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 599996543210 00 00000111 112468899999999998887776
Q ss_pred -----CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHC----CCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~----gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|++||+||.. ....+++..+++|+.++.++.+++... +..++|++||......
T Consensus 83 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~--------- 153 (262)
T 3pk0_A 83 VEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPIT--------- 153 (262)
T ss_dssp HHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTTB---------
T ss_pred HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhccC---------
Confidence 799999999972 133456778999999999999988665 6789999999865310
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (520)
+..+...|+.||+..|.+.+.++.+ +|+++.+++|+.++++......+..........+ ...+
T Consensus 154 -----~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p---------~~r~ 219 (262)
T 3pk0_A 154 -----GYPGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLENGEEYIASMARSIP---------AGAL 219 (262)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHTTCHHHHHHHHTTST---------TSSC
T ss_pred -----CCCCChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCccccccCHHHHHHHHhcCC---------CCCC
Confidence 2234578999999999998887655 6999999999999987433222333333333222 2346
Q ss_pred ccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 225 i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
..++|+|+++..++.. ......|+.+++.++..+
T Consensus 220 ~~p~dva~~v~~L~s~---~~~~itG~~i~vdGG~~~ 253 (262)
T 3pk0_A 220 GTPEDIGHLAAFLATK---EAGYITGQAIAVDGGQVL 253 (262)
T ss_dssp BCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTTTC
T ss_pred cCHHHHHHHHHHHhCc---cccCCcCCEEEECCCeec
Confidence 7899999999988751 124578999999987643
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-21 Score=188.48 Aligned_cols=224 Identities=12% Similarity=0.077 Sum_probs=156.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEEecCCCHHHHHHHHc-
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
++|++|||||+|+||++++++|+++| ++|+++|+ +... ...+.+ ...++..+.+|++|.+++.++++
T Consensus 3 ~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r--------~~~~-~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~ 72 (255)
T 2q2v_A 3 KGKTALVTGSTSGIGLGIAQVLARAG-ANIVLNGF--------GDPA-PALAEIARHGVKAVHHPADLSDVAQIEALFAL 72 (255)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEECS--------SCCH-HHHHHHHTTSCCEEEECCCTTSHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeC--------CchH-HHHHHHHhcCCceEEEeCCCCCHHHHHHHHHH
Confidence 56899999999999999999999999 59999544 3221 000000 12357888999999999988887
Q ss_pred ------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCC
Q 010005 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|+|||+||... ...+++..+++|+.++.++.+++ ++.+.+++|++||...+..
T Consensus 73 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------- 144 (255)
T 2q2v_A 73 AEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLVG-------- 144 (255)
T ss_dssp HHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSC--------
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhccC--------
Confidence 7999999999721 23456778999999777766655 6677789999999987631
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCc---eEEe-cCCC
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT---KFII-GSGE 219 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~---~~i~-g~g~ 219 (520)
..+...|+.+|+..|.+.+.++.+ +|++++++||+.+++|......... ... .+.. .... .+..
T Consensus 145 -------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~ 215 (255)
T 2q2v_A 145 -------STGKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQKQIDDR-AAN-GGDPLQAQHDLLAEKQ 215 (255)
T ss_dssp -------CTTBHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHHHHHHHH-HHH-TCCHHHHHHHHHTTTC
T ss_pred -------CCCchhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchhhhcccc-ccc-ccchHHHHHHHHhccC
Confidence 123568999999999998877543 5899999999999987432111000 000 0000 0001 2223
Q ss_pred cccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
+...+++++|+|++++.++.. ......|+.|++.++..
T Consensus 216 p~~~~~~~~dvA~~~~~l~s~---~~~~~tG~~~~vdgG~~ 253 (255)
T 2q2v_A 216 PSLAFVTPEHLGELVLFLCSE---AGSQVRGAAWNVDGGWL 253 (255)
T ss_dssp TTCCCBCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTGG
T ss_pred CCCCCcCHHHHHHHHHHHhCC---ccCCCCCCEEEECCCcc
Confidence 445689999999999988751 11235689999988643
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-21 Score=186.82 Aligned_cols=220 Identities=12% Similarity=0.067 Sum_probs=156.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCC-CCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPD-SLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~-~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
+++|+|+||||+|+||++++++|+++| ++|+++++.. ... ...+ .....++.++.+|++|.+++.++++
T Consensus 4 ~~~k~vlVtGasggiG~~~a~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (251)
T 1zk4_A 4 LDGKVAIITGGTLGIGLAIATKFVEEG-AKVMITGRHS--------DVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFD 74 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHH
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHhhccCceEEEECCCCCHHHHHHHHH
Confidence 457899999999999999999999999 5999955432 100 0000 0011468899999999998888776
Q ss_pred -------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHH----HHCCC-CEEEEeecccccccCCCCCC
Q 010005 84 -------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKV-RRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 84 -------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gv-kr~V~~SS~~vyg~~~~~~~ 144 (520)
++|+|||+||.. ....+++..+++|+.++.++.+++ ++.+. +++|++||...+.
T Consensus 75 ~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~------- 147 (251)
T 1zk4_A 75 ATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFV------- 147 (251)
T ss_dssp HHHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTS-------
T ss_pred HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhcc-------
Confidence 489999999972 122345778999999887766654 45666 7999999998763
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcC-----CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCC
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANN-----IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGE 219 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~-----~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~ 219 (520)
+..+...|+.+|+..|.+.+.++. ..|++++++||+.++++.............. ....
T Consensus 148 --------~~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~--------~~~~ 211 (251)
T 1zk4_A 148 --------GDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQ--------RTKT 211 (251)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTTHHHHHTS--------TTTC
T ss_pred --------CCCCCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhhcCchhhhHHH--------hhcC
Confidence 113456899999999999887653 4789999999999998743221111111101 1112
Q ss_pred cccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
....+++++|+|++++.++.. ......|+.++++++..
T Consensus 212 ~~~~~~~~~dva~~~~~l~~~---~~~~~~G~~~~v~gG~~ 249 (251)
T 1zk4_A 212 PMGHIGEPNDIAYICVYLASN---ESKFATGSEFVVDGGYT 249 (251)
T ss_dssp TTSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred CCCCCcCHHHHHHHHHHHcCc---ccccccCcEEEECCCcc
Confidence 234688999999999988861 11235689999998753
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-21 Score=188.41 Aligned_cols=226 Identities=16% Similarity=0.140 Sum_probs=161.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC--CCCCC--CCCCCcEEEEecCCCHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS--LLPDS--LSSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~--~l~~~--~~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
+++|+||||||+|+||++++++|+++| ++|+++++. ..+. ...+. ....++.++.+|++|.+++.++
T Consensus 12 ~~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~--------~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~ 82 (265)
T 1h5q_A 12 FVNKTIIVTGGNRGIGLAFTRAVAAAG-ANVAVIYRS--------AADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKT 82 (265)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTT-EEEEEEESS--------CTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCc--------chhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHH
Confidence 346799999999999999999999999 699995542 2110 00000 0024688999999999988877
Q ss_pred Hc-------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHC----C-CCEEEEeecccccccCCCC
Q 010005 82 LE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 82 l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~----g-vkr~V~~SS~~vyg~~~~~ 142 (520)
++ ++|+|||+||... ...+++..+++|+.++.++++++... + .+++|++||...+.....
T Consensus 83 ~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~- 161 (265)
T 1h5q_A 83 IQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQS- 161 (265)
T ss_dssp HHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEE-
T ss_pred HHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhccccc-
Confidence 75 3899999999721 23456678999999999999998653 3 479999999887632111
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGE 219 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~ 219 (520)
+.. +..+...|+.+|+..|.+++.++.+ +|++++++||+.++++......+..........
T Consensus 162 -----~~~--~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~--------- 225 (265)
T 1h5q_A 162 -----SLN--GSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMDKKIRDHQASNI--------- 225 (265)
T ss_dssp -----ETT--EECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSCHHHHHHHHHTC---------
T ss_pred -----ccc--ccccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCccccccccccchhHHHHHHhcC---------
Confidence 011 2345778999999999998887643 589999999999998864433333322222111
Q ss_pred cccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
....+++++|+|++++.++.. ......|+.|+++++..
T Consensus 226 ~~~~~~~~~dva~~~~~l~~~---~~~~~~G~~~~v~gG~~ 263 (265)
T 1h5q_A 226 PLNRFAQPEEMTGQAILLLSD---HATYMTGGEYFIDGGQL 263 (265)
T ss_dssp TTSSCBCGGGGHHHHHHHHSG---GGTTCCSCEEEECTTGG
T ss_pred cccCCCCHHHHHHHHHhhccC---chhcCcCcEEEecCCEe
Confidence 223578999999999988762 11346789999998753
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.3e-22 Score=191.98 Aligned_cols=230 Identities=14% Similarity=0.071 Sum_probs=163.2
Q ss_pred CCCCCCCCCeEEEEcCC--ChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHH
Q 010005 1 MPFDEAIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQI 78 (520)
Q Consensus 1 m~~~~~~~~~ILVtGat--GfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l 78 (520)
|+....++|++|||||+ |+||++++++|+++| ++|+++|+... . ......+.+.. +++.++.+|++|++++
T Consensus 1 M~~~~l~~k~vlVTGas~~~gIG~~ia~~l~~~G-~~V~~~~r~~~--~--~~~~~~l~~~~--~~~~~~~~D~~~~~~v 73 (261)
T 2wyu_A 1 MLTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAG-AEVALSYQAER--L--RPEAEKLAEAL--GGALLFRADVTQDEEL 73 (261)
T ss_dssp CEEECCTTCEEEEESCCSSSSHHHHHHHHHHHHT-CEEEEEESCGG--G--HHHHHHHHHHT--TCCEEEECCTTCHHHH
T ss_pred CCccCCCCCEEEEECCCCCCcHHHHHHHHHHHCC-CEEEEEcCCHH--H--HHHHHHHHHhc--CCcEEEECCCCCHHHH
Confidence 54555667899999999 999999999999999 59999654321 0 00000011101 2368899999999988
Q ss_pred HHHHc-------CCCEEEEcccCCC-----------CCcchhhHHhhhHHHHHHHHHHHHHCC--CCEEEEeeccccccc
Q 010005 79 KKVLE-------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFD 138 (520)
Q Consensus 79 ~~~l~-------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~ll~aa~~~g--vkr~V~~SS~~vyg~ 138 (520)
.++++ ++|+|||+||... ...+++..+++|+.++.++++++...- -.++|++||...+.
T Consensus 74 ~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~- 152 (261)
T 2wyu_A 74 DALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEK- 152 (261)
T ss_dssp HHHHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTS-
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccC-
Confidence 88776 6899999999632 234567899999999999999998762 24899999987652
Q ss_pred CCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCC--chHHHHHHhcCCCceE
Q 010005 139 GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKPGWTKF 213 (520)
Q Consensus 139 ~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~--~~~~l~~~~~~g~~~~ 213 (520)
+..+...|+.||+..|.+.+.++.+ +|+++++++|+.++++.... ..+..........
T Consensus 153 --------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~--- 215 (261)
T 2wyu_A 153 --------------VVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTA--- 215 (261)
T ss_dssp --------------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGCTTHHHHHHHHHHHS---
T ss_pred --------------CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhccccHHHHHHHHhcC---
Confidence 1233568999999999998877644 48999999999999985432 1233333222211
Q ss_pred EecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHH
Q 010005 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFW 264 (520)
Q Consensus 214 i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~ 264 (520)
....+.+++|+|++++.++.. ......|+.+++.++...+..
T Consensus 216 ------p~~~~~~~~dva~~v~~l~s~---~~~~~tG~~~~vdgG~~~~~~ 257 (261)
T 2wyu_A 216 ------PLRRNITQEEVGNLGLFLLSP---LASGITGEVVYVDAGYHIMGM 257 (261)
T ss_dssp ------TTSSCCCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGGGBC-
T ss_pred ------CCCCCCCHHHHHHHHHHHcCh---hhcCCCCCEEEECCCccccCC
Confidence 123467899999999988751 123457899999988655433
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-21 Score=191.12 Aligned_cols=227 Identities=14% Similarity=-0.001 Sum_probs=159.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
.++|+|+||||+|+||++++++|+++| ++|+++|+.. .+. ...+.+ ..++.++.+|++|.+++.++++
T Consensus 14 l~gk~vlVTGas~gIG~~~a~~L~~~G-~~V~~~~r~~--------~~~~~~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~ 83 (291)
T 3rd5_A 14 FAQRTVVITGANSGLGAVTARELARRG-ATVIMAVRDT--------RKGEAAARTM-AGQVEVRELDLQDLSSVRRFADG 83 (291)
T ss_dssp CTTCEEEEECCSSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHTTS-SSEEEEEECCTTCHHHHHHHHHT
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEECCH--------HHHHHHHHHh-cCCeeEEEcCCCCHHHHHHHHHh
Confidence 356899999999999999999999999 5999955432 210 011111 3468899999999999999998
Q ss_pred --CCCEEEEcccCC-----CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCC
Q 010005 84 --GASTVFYVDATD-----LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF 156 (520)
Q Consensus 84 --~~D~Vih~aa~~-----~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p 156 (520)
++|++||+||.. ....+++.++++|+.|+.++++++.....+|+|++||...+...........+.. +..+
T Consensus 84 ~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~riv~isS~~~~~~~~~~~~~~~~~~--~~~~ 161 (291)
T 3rd5_A 84 VSGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTDRVVTVSSMAHWPGRINLEDLNWRSR--RYSP 161 (291)
T ss_dssp CCCEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEEEEEEECCGGGTTCCCCSSCTTCSSS--CCCH
T ss_pred cCCCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeechhhccCCCCccccccccc--CCCC
Confidence 569999999972 2456778899999999999999999988789999999988743322111111112 3455
Q ss_pred CChHHHHHHHHHHHHHHhcCC---CC--ceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHH
Q 010005 157 QDLMCDLKAQAEALVLFANNI---DG--LLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVA 231 (520)
Q Consensus 157 ~~~Y~~sK~~~E~~~~~~~~~---~g--i~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva 231 (520)
...|+.||+..|.+.+.++.+ .| +++.+++||.+..+..+...+.+...... . ...+-...++|+|
T Consensus 162 ~~~Y~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~A 232 (291)
T 3rd5_A 162 WLAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASGRKLGDALMS-----A----ATRVVATDADFGA 232 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC-----------------------------CHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCccccccccchHHHHHHHH-----H----HHHHHhCCHHHHH
Confidence 678999999999988877544 34 99999999999887543322111111111 0 0112233599999
Q ss_pred HHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 232 HAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 232 ~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
++++.++. .+...|+.+++.++
T Consensus 233 ~~~~~l~~-----~~~~~G~~~~vdgG 254 (291)
T 3rd5_A 233 RQTLYAAS-----QDLPGDSFVGPRFG 254 (291)
T ss_dssp HHHHHHHH-----SCCCTTCEEEETTS
T ss_pred HHHHHHHc-----CCCCCCceeCCccc
Confidence 99999988 35677888888764
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-21 Score=188.21 Aligned_cols=220 Identities=12% Similarity=0.068 Sum_probs=157.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++|+||||||+|+||++++++|+++| ++|+++|+.. ... ...+.+ ...++..+.+|++|++++.+++
T Consensus 7 l~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 77 (260)
T 2ae2_A 7 LEGCTALVTGGSRGIGYGIVEELASLG-ASVYTCSRNQ--------KELNDCLTQWRSKGFKVEASVCDLSSRSERQELM 77 (260)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH
Confidence 456899999999999999999999999 5999955432 100 000000 1235788999999999888877
Q ss_pred --------cCCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCC
Q 010005 83 --------EGASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 83 --------~~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~ 143 (520)
.++|+|||+||.. ....+++..+++|+.|+.++++++ ++.+.+++|++||...+.
T Consensus 78 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------ 151 (260)
T 2ae2_A 78 NTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGAL------ 151 (260)
T ss_dssp HHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTS------
T ss_pred HHHHHHcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc------
Confidence 4699999999972 123456778999999999999998 456778999999987752
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch--HHHHH---HhcCCCceEEe
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVN---LAKPGWTKFII 215 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~--~~l~~---~~~~g~~~~i~ 215 (520)
+..+...|+.||+..|.+.+.++.+ +|+++++++|+.+.++...... +.... ...
T Consensus 152 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~-------- 214 (260)
T 2ae2_A 152 ---------AVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLI-------- 214 (260)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHH--------
T ss_pred ---------CCCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhccChhhHHHHHHHH--------
Confidence 1234568999999999998887654 4899999999999876311000 00001 111
Q ss_pred cCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 216 g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
+..+...+.+++|+|++++.++.. ......|+.+++.++...
T Consensus 215 -~~~~~~~~~~~~dvA~~v~~l~s~---~~~~~tG~~~~vdgG~~~ 256 (260)
T 2ae2_A 215 -DRCALRRMGEPKELAAMVAFLCFP---AASYVTGQIIYVDGGLMA 256 (260)
T ss_dssp -HTSTTCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGGG
T ss_pred -hcCCCCCCCCHHHHHHHHHHHcCc---cccCCCCCEEEECCCccc
Confidence 112334688999999999988751 123467899999987543
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-21 Score=188.35 Aligned_cols=220 Identities=13% Similarity=0.097 Sum_probs=157.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
+++|+||||||+|+||++++++|+++| ++|+++++. +... ..+.+.+ ...++.++.+|++|.+++.+++
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~-------~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~ 76 (261)
T 1gee_A 5 LEGKVVVITGSSTGLGKSMAIRFATEK-AKVVVNYRS-------KEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLV 76 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESS-------CHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEcCC-------ChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHH
Confidence 457899999999999999999999999 599995541 2110 0000000 1235788999999999888877
Q ss_pred c-------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHH----CC-CCEEEEeecccccccCCCCC
Q 010005 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~----~g-vkr~V~~SS~~vyg~~~~~~ 143 (520)
+ ++|+|||+||... ...+++..+++|+.++.++++++.. .+ .+++|++||...+.
T Consensus 77 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~------ 150 (261)
T 1gee_A 77 QSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI------ 150 (261)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS------
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcC------
Confidence 6 7999999999721 2345677899999999998887654 34 57999999987652
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch--HHHHHHhcCCCceEEecCC
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~--~~l~~~~~~g~~~~i~g~g 218 (520)
+..+...|+.+|+..|.+.+.++.+ .|++++++||+.++++...... +.........
T Consensus 151 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~--------- 212 (261)
T 1gee_A 151 ---------PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESM--------- 212 (261)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTT---------
T ss_pred ---------CCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhhhcccChhHHHHHHhc---------
Confidence 2245678999999999888776543 5899999999999988542211 2222222221
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
.....+++++|+|++++.++.. ......|+.+++.++..
T Consensus 213 ~~~~~~~~~~dva~~~~~l~~~---~~~~~~G~~~~v~gg~~ 251 (261)
T 1gee_A 213 IPMGYIGEPEEIAAVAAWLASS---EASYVTGITLFADGGMT 251 (261)
T ss_dssp CTTSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred CCCCCCcCHHHHHHHHHHHhCc---cccCCCCcEEEEcCCcc
Confidence 1224578999999999988751 12345789999998754
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=6.5e-21 Score=188.45 Aligned_cols=220 Identities=12% Similarity=0.037 Sum_probs=155.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
++|+|+||||+|+||+++++.|+++| ++|+++++.... .. .....+.. ...++.++.+|++|.+++.++++
T Consensus 43 ~~k~vlITGasggIG~~la~~L~~~G-~~V~~~~r~~~~-~~--~~~~~l~~--~~~~~~~~~~Dl~d~~~v~~~~~~~~ 116 (285)
T 2c07_A 43 ENKVALVTGAGRGIGREIAKMLAKSV-SHVICISRTQKS-CD--SVVDEIKS--FGYESSGYAGDVSKKEEISEVINKIL 116 (285)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTS-SEEEEEESSHHH-HH--HHHHHHHT--TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcC-CEEEEEcCCHHH-HH--HHHHHHHh--cCCceeEEECCCCCHHHHHHHHHHHH
Confidence 45899999999999999999999999 599985432210 00 00000100 12467889999999998888774
Q ss_pred ----CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCCCC
Q 010005 84 ----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 ----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
++|+|||+||.. ....+++..+++|+.|+.++.+++. +.+.+++|++||...+.
T Consensus 117 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~----------- 185 (285)
T 2c07_A 117 TEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLT----------- 185 (285)
T ss_dssp HHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH-----------
T ss_pred HhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhcc-----------
Confidence 689999999972 1234567889999999888877775 45678999999997763
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccc
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (520)
+..+...|+.+|+..|.+.+.++.+ .|++++++||+.+.++......+.......... ....++
T Consensus 186 ----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~---------~~~~~~ 252 (285)
T 2c07_A 186 ----GNVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKISEQIKKNIISNI---------PAGRMG 252 (285)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----CCHHHHHHHHTTC---------TTSSCB
T ss_pred ----CCCCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchhhcCHHHHHHHHhhC---------CCCCCC
Confidence 1123568999999999888776543 589999999999998865433333333332222 123488
Q ss_pred cHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 226 ~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+++|+|++++.++.. ......|+.++++++.
T Consensus 253 ~~~dvA~~~~~l~~~---~~~~~~G~~i~v~gG~ 283 (285)
T 2c07_A 253 TPEEVANLACFLSSD---KSGYINGRVFVIDGGL 283 (285)
T ss_dssp CHHHHHHHHHHHHSG---GGTTCCSCEEEESTTS
T ss_pred CHHHHHHHHHHHhCC---CcCCCCCCEEEeCCCc
Confidence 999999999988761 1123578999998864
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-21 Score=191.21 Aligned_cols=224 Identities=16% Similarity=0.160 Sum_probs=161.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
++|+||||||+|+||+++++.|+++| ++|+++|+.... +. .....+.. ....++..+.+|++|.+++.++++
T Consensus 40 ~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~-~~--~~~~~l~~-~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 114 (293)
T 3rih_A 40 SARSVLVTGGTKGIGRGIATVFARAG-ANVAVAARSPRE-LS--SVTAELGE-LGAGNVIGVRLDVSDPGSCADAARTVV 114 (293)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSGGG-GH--HHHHHHTT-SSSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHH-HH--HHHHHHHh-hCCCcEEEEEEeCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 599996554310 00 00001111 111468899999999988777765
Q ss_pred ----CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCCCC
Q 010005 84 ----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 ----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
++|++||+||.. ....+++..+++|+.|+.++++++ ++.+..++|++||...+..
T Consensus 115 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iV~isS~~~~~~---------- 184 (293)
T 3rih_A 115 DAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPVT---------- 184 (293)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCEEEEECCSBTTTB----------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEeChhhccC----------
Confidence 689999999972 133456788999999999999998 4566789999999875310
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccc
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.++++......+..........+ ...+.
T Consensus 185 ----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p---------~~r~~ 251 (293)
T 3rih_A 185 ----GYPGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVDMGEEYISGMARSIP---------MGMLG 251 (293)
T ss_dssp ----BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHTCHHHHHHHHTTST---------TSSCB
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchhhccHHHHHHHHhcCC---------CCCCC
Confidence 1234578999999999998877644 6899999999999987543222333443333332 23355
Q ss_pred cHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 226 ~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
..+|+|++++.++.. ......|+++++.++..+
T Consensus 252 ~p~dvA~~v~fL~s~---~a~~itG~~i~vdGG~~~ 284 (293)
T 3rih_A 252 SPVDIGHLAAFLATD---EAGYITGQAIVVDGGQVL 284 (293)
T ss_dssp CHHHHHHHHHHHHSG---GGTTCCSCEEEESTTTTC
T ss_pred CHHHHHHHHHHHhCc---cccCCCCCEEEECCCccC
Confidence 799999999988751 124577999999987644
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.8e-21 Score=185.69 Aligned_cols=232 Identities=17% Similarity=0.168 Sum_probs=155.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
+++|++|||||+|+||++++++|+++| ++|+++|+.... .. .....+.......++.++.+|++|++++.++++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~-~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 80 (260)
T 2z1n_A 5 IQGKLAVVTAGSSGLGFASALELARNG-ARLLLFSRNREK-LE--AAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKA 80 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HH--HHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHH-HH--HHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 599995543210 00 000000000001267889999999999988887
Q ss_pred ----CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCCCC
Q 010005 84 ----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 ----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
++|+|||+||.. ....+++..+++|+.++.++.+++ ++.+.+++|++||...+.
T Consensus 81 ~~~~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 149 (260)
T 2z1n_A 81 RDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLR----------- 149 (260)
T ss_dssp HHTTCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-----------
T ss_pred HHhcCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcC-----------
Confidence 699999999962 123466789999999997766665 455778999999998863
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHH--HhcCCCceEEecCCCcccc
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVN--LAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~--~~~~g~~~~i~g~g~~~~~ 223 (520)
+..+...|+.+|+..|.+.+.++.+ +|++++++||+.++++........... ...................
T Consensus 150 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r 225 (260)
T 2z1n_A 150 ----PWQDLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSMASRIPMGR 225 (260)
T ss_dssp ----CCTTBHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC-----------------------CCTTSS
T ss_pred ----CCCCCchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhcccCCcHHHHHHHHHhcCCCCC
Confidence 1233568999999999988876543 589999999999999865411100000 0000000001111223345
Q ss_pred cccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+.+++|+|++++.++.. ......|+.+++.++.
T Consensus 226 ~~~~~dva~~v~~l~s~---~~~~~tG~~i~vdGG~ 258 (260)
T 2z1n_A 226 VGKPEELASVVAFLASE---KASFITGAVIPVDGGA 258 (260)
T ss_dssp CCCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTT
T ss_pred ccCHHHHHHHHHHHhCc---cccCCCCCEEEeCCCc
Confidence 78999999999988751 1235678999998764
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.9e-22 Score=191.61 Aligned_cols=224 Identities=11% Similarity=0.024 Sum_probs=159.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
+++|+||||||+|+||++++++|+++| ++|+++|+.... +. .....+.. ...++..+.+|++|.+++.++++
T Consensus 12 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~-~~--~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 85 (260)
T 2zat_A 12 LENKVALVTASTDGIGLAIARRLAQDG-AHVVVSSRKQEN-VD--RTVATLQG--EGLSVTGTVCHVGKAEDRERLVAMA 85 (260)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCHHH-HH--HHHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHH-HH--HHHHHHHh--cCCceEEEEccCCCHHHHHHHHHHH
Confidence 346899999999999999999999999 599995543210 00 00000000 12357889999999998887776
Q ss_pred -----CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCC
Q 010005 84 -----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 -----~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|+|||+||... ...+++..+++|+.++.++++++. +.+.+++|++||...|.
T Consensus 86 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 156 (260)
T 2zat_A 86 VNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYH--------- 156 (260)
T ss_dssp HHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS---------
T ss_pred HHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcC---------
Confidence 7999999999621 223457789999999999888874 56778999999998873
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch--HHHHHHhcCCCceEEecCCCcc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENM 221 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~--~~l~~~~~~g~~~~i~g~g~~~ 221 (520)
+..+...|+.+|+..|.+.+.++.+ +|+++++++|+.+.++...... +...... .+..+.
T Consensus 157 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~---------~~~~~~ 221 (260)
T 2zat_A 157 ------PFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYM---------KESLRI 221 (260)
T ss_dssp ------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHHHHSSHHHHHHH---------HHHHTC
T ss_pred ------CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccchhcccChHHHHHH---------HhcCCC
Confidence 1234568999999999998887543 5899999999999887532100 0000111 111123
Q ss_pred cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC
Q 010005 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t 262 (520)
..+.+++|+|++++.++.. ......|++++++++..++
T Consensus 222 ~~~~~~~dva~~v~~l~s~---~~~~~tG~~~~vdgG~~~s 259 (260)
T 2zat_A 222 RRLGNPEDCAGIVSFLCSE---DASYITGETVVVGGGTASR 259 (260)
T ss_dssp SSCBCGGGGHHHHHHHTSG---GGTTCCSCEEEESTTCCCC
T ss_pred CCCCCHHHHHHHHHHHcCc---ccCCccCCEEEECCCcccc
Confidence 4688999999999988751 1123578999999987665
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-21 Score=185.89 Aligned_cols=225 Identities=12% Similarity=0.064 Sum_probs=162.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.+++++|||||+|+||++++++|.++| ++|++.|+.... .. .....+.. ...++..+.+|++|.+++.++++
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~-~~--~~~~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~~~ 83 (256)
T 3gaf_A 10 LNDAVAIVTGAAAGIGRAIAGTFAKAG-ASVVVTDLKSEG-AE--AVAAAIRQ--AGGKAIGLECNVTDEQHREAVIKAA 83 (256)
T ss_dssp CTTCEEEECSCSSHHHHHHHHHHHHHT-CEEEEEESSHHH-HH--HHHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHH-HH--HHHHHHHh--cCCcEEEEECCCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 589996553210 00 00000000 13468889999999998887775
Q ss_pred -----CCCEEEEcccCCC------CCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCCCC
Q 010005 84 -----GASTVFYVDATDL------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 -----~~D~Vih~aa~~~------~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
++|++||+||... ...+++..+++|+.|+.++++++. +.+..++|++||...+.
T Consensus 84 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~----------- 152 (256)
T 3gaf_A 84 LDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGEN----------- 152 (256)
T ss_dssp HHHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTC-----------
T ss_pred HHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcC-----------
Confidence 7899999999821 234667889999999999999974 55667999999988762
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc-hHHHHHHhcCCCceEEecCCCccccc
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL-VPLLVNLAKPGWTKFIIGSGENMSDF 224 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~-~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (520)
+..+...|+.||+..|.+.+.++.+ +|+++.+++|+.+.++..... .+........ ..+...+
T Consensus 153 ----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~---------~~p~~r~ 219 (256)
T 3gaf_A 153 ----TNVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATVLTPEIERAMLK---------HTPLGRL 219 (256)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHCCHHHHHHHHT---------TCTTSSC
T ss_pred ----CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhhccCHHHHHHHHh---------cCCCCCC
Confidence 2234578999999999998877644 589999999999987632111 1222222222 2234567
Q ss_pred ccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCH
Q 010005 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKF 263 (520)
Q Consensus 225 i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~ 263 (520)
.+++|+|++++.++.. ......|+++++.++...++
T Consensus 220 ~~~~dva~~~~~L~s~---~~~~itG~~i~vdgG~~~~~ 255 (256)
T 3gaf_A 220 GEAQDIANAALFLCSP---AAAWISGQVLTVSGGGVQEL 255 (256)
T ss_dssp BCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTSCCC-
T ss_pred CCHHHHHHHHHHHcCC---cccCccCCEEEECCCccccC
Confidence 8899999999988851 12456799999999876654
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=181.67 Aligned_cols=220 Identities=11% Similarity=0.078 Sum_probs=163.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++|+++||||+|+||++++++|+++| ++|++.++.. .. ..+.+.+ ...++..+.+|++|.+++.+++
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~G-~~v~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 73 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASKG-ATVVGTATSQ--------ASAEKFENSMKEKGFKARGLVLNISDIESIQNFF 73 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSH--------HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHH
Confidence 356899999999999999999999999 5999855432 10 0000000 1246889999999999888777
Q ss_pred c-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCC
Q 010005 83 E-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
+ ++|+|||+||.. ....+++..+++|+.++.++.+++.. .+..++|++||...+.
T Consensus 74 ~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------- 146 (247)
T 3lyl_A 74 AEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSA------- 146 (247)
T ss_dssp HHHHHTTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH-------
T ss_pred HHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcc-------
Confidence 5 479999999972 13345678999999999999998754 3556999999988763
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcc
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (520)
+..+...|+.+|+..|.+.+.++.+ +|+++.+++|+.+.++......+........+ .+.
T Consensus 147 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~---------~~~ 209 (247)
T 3lyl_A 147 --------GNPGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTDKLTDEQKSFIATK---------IPS 209 (247)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTTSCHHHHHHHHTT---------STT
T ss_pred --------CCCCcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccchhccHHHHHHHhhc---------CCC
Confidence 2234578999999888888776543 68999999999999887655444443333322 234
Q ss_pred cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
..+.+++|+|++++.++.. ......|+.+++.++..+
T Consensus 210 ~~~~~~~dva~~i~~l~s~---~~~~~tG~~i~vdgG~~~ 246 (247)
T 3lyl_A 210 GQIGEPKDIAAAVAFLASE---EAKYITGQTLHVNGGMYM 246 (247)
T ss_dssp CCCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTSSC
T ss_pred CCCcCHHHHHHHHHHHhCC---CcCCccCCEEEECCCEec
Confidence 5688999999999988752 124567999999987654
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=184.11 Aligned_cols=226 Identities=11% Similarity=0.082 Sum_probs=153.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC--CCCCCCCC---CCCcEEEEecCCCHHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN--SLLPDSLS---SGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~--~~l~~~~~---~~~v~~~~~Dl~d~~~l~~~ 81 (520)
++|++|||||+|+||+++++.|+++| ++|+++|+ +... ....+.+. ..++..+.+|++|.+++.++
T Consensus 3 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~ 73 (260)
T 1x1t_A 3 KGKVAVVTGSTSGIGLGIATALAAQG-ADIVLNGF--------GDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGL 73 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEECC--------SCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHcC-CEEEEEeC--------CcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHH
Confidence 46899999999999999999999999 59999544 3221 00000000 23578899999999988887
Q ss_pred Hc-------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCC
Q 010005 82 LE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 82 l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~ 143 (520)
++ ++|++||+||... ...+++..+++|+.++.++++++. +.+.+++|++||...+.
T Consensus 74 ~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------ 147 (260)
T 1x1t_A 74 VDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLV------ 147 (260)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS------
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCc------
Confidence 75 6999999999721 234567899999999999988884 34667999999998762
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHh--cCCCceEEe-cC
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLA--KPGWTKFII-GS 217 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~--~~g~~~~i~-g~ 217 (520)
+..+...|+.||+..|.+.+.++. .+|+++++++|+.+.++......+...... ......... ..
T Consensus 148 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (260)
T 1x1t_A 148 ---------ASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSE 218 (260)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CHHH
T ss_pred ---------CCCCCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHhhhhhccccCCchHHHHHHHhhc
Confidence 123456899999999999887653 358999999999999885432211110000 000000000 11
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..+...+.+++|+|++++.++.. ......|+.+++.++.
T Consensus 219 ~~p~~~~~~p~dva~~~~~l~s~---~~~~~tG~~~~vdgG~ 257 (260)
T 1x1t_A 219 KQPSLQFVTPEQLGGTAVFLASD---AAAQITGTTVSVDGGW 257 (260)
T ss_dssp HCTTCCCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTG
T ss_pred cCCCCCCcCHHHHHHHHHHHhCh---hhcCCCCCEEEECCCc
Confidence 12334688999999999988751 1234678999998864
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-21 Score=187.28 Aligned_cols=217 Identities=15% Similarity=0.154 Sum_probs=131.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.+++++|||||+|+||++++++|+++| ++|+++|+.. .. ..+.+.+ ...++..+.+|++|.+++.+++
T Consensus 7 ~~~k~vlITGas~giG~~~a~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 77 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAEALAREG-AAVVVADINA--------EAAEAVAKQIVADGGTAISVAVDVSDPESAKAMA 77 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEcCCH--------HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 457899999999999999999999999 5899965432 10 0000000 1246788999999999888877
Q ss_pred c-------CCCEEEEcccCC----------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCC
Q 010005 83 E-------GASTVFYVDATD----------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSH 141 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~----------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~ 141 (520)
+ ++|+|||+||.. ....+++..+++|+.++.++.+++ ++.+..++|++||...|.
T Consensus 78 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---- 153 (253)
T 3qiv_A 78 DRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAWL---- 153 (253)
T ss_dssp HHHHHHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC---------
T ss_pred HHHHHHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCccccC----
Confidence 6 799999999861 233456789999999966666554 455667999999998761
Q ss_pred CCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchH-HHHHHhcCCCceEEecC
Q 010005 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-LLVNLAKPGWTKFIIGS 217 (520)
Q Consensus 142 ~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~-~l~~~~~~g~~~~i~g~ 217 (520)
+...|+.||+..|.+.+.++.+ .|+++.+++|+.++++......+ .+...+..
T Consensus 154 --------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~--------- 210 (253)
T 3qiv_A 154 --------------YSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTTTPKEMVDDIVK--------- 210 (253)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC-------------------------------
T ss_pred --------------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhcCcHHHHHHHhc---------
Confidence 2356999999999988877654 48999999999999986543211 12222222
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
+.....+..++|+|++++.++.. ......|+.|+++++..+
T Consensus 211 ~~~~~~~~~~~dva~~~~~l~s~---~~~~~tG~~~~vdgG~~~ 251 (253)
T 3qiv_A 211 GLPLSRMGTPDDLVGMCLFLLSD---EASWITGQIFNVDGGQII 251 (253)
T ss_dssp ---------CCHHHHHHHHHHSG---GGTTCCSCEEEC------
T ss_pred cCCCCCCCCHHHHHHHHHHHcCc---cccCCCCCEEEECCCeec
Confidence 22334566789999999988851 123457999999987654
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=182.86 Aligned_cols=219 Identities=12% Similarity=0.099 Sum_probs=152.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC--CCCCCCCCCCCcEEEEecCCCHHHHHHHH
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN--SLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~--~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.+++|++|||||+|+||+++++.|+++| ++|+++|+... .+ ..+.+ ...++..+.+|++|++++.+++
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~-------~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~ 73 (249)
T 2ew8_A 4 RLKDKLAVITGGANGIGRAIAERFAVEG-ADIAIADLVPA-------PEAEAAIRN--LGRRVLTVKCDVSQPGDVEAFG 73 (249)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCC-------HHHHHHHHH--TTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEcCCch-------hHHHHHHHh--cCCcEEEEEeecCCHHHHHHHH
Confidence 3567899999999999999999999999 59999654320 10 00100 1246788999999999888775
Q ss_pred c-------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHH----HHHCCCCEEEEeecccccccCCCCCC
Q 010005 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~a----a~~~gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
+ ++|+|||+||... ...+++..+++|+.++.++.++ +++.+.+++|++||...+.
T Consensus 74 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------- 146 (249)
T 2ew8_A 74 KQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWL------- 146 (249)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS-------
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcc-------
Confidence 4 7999999999721 2345677899999998888887 5566778999999998763
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCC-CchHHHHHHhcCCCceEEecCCCc
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT-QLVPLLVNLAKPGWTKFIIGSGEN 220 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~-~~~~~l~~~~~~g~~~~i~g~g~~ 220 (520)
+..+...|+.||+..|.+.+.++.+ +|+++++++|+.+.++... ...... ..... .. . ..
T Consensus 147 --------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~-~~~~~-~~-~-----~~ 210 (249)
T 2ew8_A 147 --------KIEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALSAM-FDVLP-NM-L-----QA 210 (249)
T ss_dssp --------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC--------------------CT-T-----SS
T ss_pred --------CCCCchhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchhccccch-hhHHH-Hh-h-----Cc
Confidence 1234568999999999998887643 5899999999999987533 111000 00000 00 0 12
Q ss_pred ccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
...+.+++|+|++++.++.. ......|+.+++.++.
T Consensus 211 ~~~~~~p~dva~~~~~l~s~---~~~~~tG~~~~vdGG~ 246 (249)
T 2ew8_A 211 IPRLQVPLDLTGAAAFLASD---DASFITGQTLAVDGGM 246 (249)
T ss_dssp SCSCCCTHHHHHHHHHHTSG---GGTTCCSCEEEESSSC
T ss_pred cCCCCCHHHHHHHHHHHcCc---ccCCCCCcEEEECCCc
Confidence 34578999999999988751 1234678999998864
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-20 Score=182.76 Aligned_cols=218 Identities=13% Similarity=0.016 Sum_probs=156.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC---CCCCcEEEEecCCCH----HH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL---SSGRAEYHQVDVRDI----SQ 77 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~---~~~~v~~~~~Dl~d~----~~ 77 (520)
+++|++|||||+|+||++++++|+++| ++|+++|+. ++.. ..+.+.+ ...++.++.+|++|. ++
T Consensus 9 ~~~k~~lVTGas~gIG~~ia~~l~~~G-~~V~~~~r~-------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 80 (276)
T 1mxh_A 9 SECPAAVITGGARRIGHSIAVRLHQQG-FRVVVHYRH-------SEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDC 80 (276)
T ss_dssp --CCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESS-------CHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCC-------ChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHH
Confidence 346799999999999999999999999 599995541 2110 0000000 024678899999999 88
Q ss_pred HHHHHc-------CCCEEEEcccCCC-------CC-----------cchhhHHhhhHHHHHHHHHHHHHC---CC-----
Q 010005 78 IKKVLE-------GASTVFYVDATDL-------NT-----------DDFYNCYMIIVQGAKNVVTACREC---KV----- 124 (520)
Q Consensus 78 l~~~l~-------~~D~Vih~aa~~~-------~~-----------~~~~~~~~~Nv~gt~~ll~aa~~~---gv----- 124 (520)
+.++++ ++|+|||+||... .. .+++..+++|+.++.++++++... +.
T Consensus 81 ~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~ 160 (276)
T 1mxh_A 81 CEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSR 160 (276)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCC
Confidence 887775 7899999999721 12 456678999999999999999874 34
Q ss_pred -CEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchH
Q 010005 125 -RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP 200 (520)
Q Consensus 125 -kr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~ 200 (520)
+++|++||...+. +..+...|+.||+..|.+.+.++.+ +|+++++++|+.+++| . ...+
T Consensus 161 ~g~iv~isS~~~~~---------------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~-~~~~ 223 (276)
T 1mxh_A 161 NLSVVNLCDAMTDL---------------PLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP-P-AMPQ 223 (276)
T ss_dssp CEEEEEECCGGGGS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-S-SSCH
T ss_pred CcEEEEECchhhcC---------------CCCCCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC-c-cCCH
Confidence 7999999998762 2234568999999999998877543 4899999999999999 3 2223
Q ss_pred HHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 201 LLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 201 ~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..........+. .+++.+++|+|++++.++.. ......|+.+++.++.
T Consensus 224 ~~~~~~~~~~p~--------~r~~~~~~dva~~v~~l~s~---~~~~~tG~~~~vdgG~ 271 (276)
T 1mxh_A 224 ETQEEYRRKVPL--------GQSEASAAQIADAIAFLVSK---DAGYITGTTLKVDGGL 271 (276)
T ss_dssp HHHHHHHTTCTT--------TSCCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTG
T ss_pred HHHHHHHhcCCC--------CCCCCCHHHHHHHHHHHhCc---cccCccCcEEEECCch
Confidence 333333322210 12378999999999988761 1234578999998864
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.1e-21 Score=187.10 Aligned_cols=224 Identities=15% Similarity=0.104 Sum_probs=161.2
Q ss_pred CCCCCCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHH
Q 010005 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQ 77 (520)
Q Consensus 1 m~~~~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~ 77 (520)
|+..+.++|++|||||+|+||++++++|+++| ++|++.++.. ... ..+.+.+ ...++..+.+|++|.++
T Consensus 21 m~~~~l~~k~vlVTGas~gIG~aia~~la~~G-~~V~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~ 92 (269)
T 4dmm_A 21 MTALPLTDRIALVTGASRGIGRAIALELAAAG-AKVAVNYASS-------AGAADEVVAAIAAAGGEAFAVKADVSQESE 92 (269)
T ss_dssp ---CTTTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSC-------HHHHHHHHHHHHHTTCCEEEEECCTTSHHH
T ss_pred ccccCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCC-------hHHHHHHHHHHHhcCCcEEEEECCCCCHHH
Confidence 43344567899999999999999999999999 5888855421 110 0000000 12467889999999998
Q ss_pred HHHHHc-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccC
Q 010005 78 IKKVLE-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDG 139 (520)
Q Consensus 78 l~~~l~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~ 139 (520)
+.++++ ++|++||+||.. ....+++..+++|+.|+.++.+++. +.+..++|++||...+.
T Consensus 93 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-- 170 (269)
T 4dmm_A 93 VEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEM-- 170 (269)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHH--
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcC--
Confidence 888776 689999999982 2335667899999999999999873 44567999999987762
Q ss_pred CCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEec
Q 010005 140 SHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIG 216 (520)
Q Consensus 140 ~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g 216 (520)
+..+...|+.||+..|.+.+.++.+ +|+++.+++||.+.++....... ......
T Consensus 171 -------------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~---~~~~~~------- 227 (269)
T 4dmm_A 171 -------------GNPGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTSELAA---EKLLEV------- 227 (269)
T ss_dssp -------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCSCHHHH---HHHGGG-------
T ss_pred -------------CCCCchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCcccccccH---HHHHhc-------
Confidence 1234568999999988887776543 68999999999999886543221 222211
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
.....+.+++|+|++++.++... ......|+++++.++..+
T Consensus 228 --~p~~r~~~~~dvA~~v~~l~s~~--~~~~itG~~i~vdGG~~~ 268 (269)
T 4dmm_A 228 --IPLGRYGEAAEVAGVVRFLAADP--AAAYITGQVINIDGGLVM 268 (269)
T ss_dssp --CTTSSCBCHHHHHHHHHHHHHCG--GGGGCCSCEEEESTTSCC
T ss_pred --CCCCCCCCHHHHHHHHHHHhCCc--ccCCCcCCEEEECCCeec
Confidence 22345778999999999988721 123467999999987654
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-20 Score=182.67 Aligned_cols=213 Identities=15% Similarity=0.072 Sum_probs=157.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++|++|||||+|+||++++++|+++| ++|++. .|+... . .....+.+|++|.+++.++++
T Consensus 26 l~gk~vlVTGas~gIG~aia~~la~~G-~~V~~~--------~r~~~~--~------~~~~~~~~Dv~~~~~~~~~~~~~ 88 (266)
T 3uxy_A 26 FEGKVALVTGAAGGIGGAVVTALRAAG-ARVAVA--------DRAVAG--I------AADLHLPGDLREAAYADGLPGAV 88 (266)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEC--------SSCCTT--S------CCSEECCCCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEE--------eCCHHH--H------HhhhccCcCCCCHHHHHHHHHHH
Confidence 346899999999999999999999999 599994 444331 1 112445899999988776664
Q ss_pred -----CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|++||+||.. ....+++..+++|+.|+.++++++ ++.+..++|++||...+.
T Consensus 89 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~---------- 158 (266)
T 3uxy_A 89 AAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLR---------- 158 (266)
T ss_dssp HHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTB----------
T ss_pred HHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCC----------
Confidence 689999999982 233566778999999999999998 566677999999987762
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCC-------chHHHHHHhcCCCceEEecC
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-------LVPLLVNLAKPGWTKFIIGS 217 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~-------~~~~l~~~~~~g~~~~i~g~ 217 (520)
+..+...|+.||+..|.+.+.++.+ +|+++.+++||.+.++.... ......... ..
T Consensus 159 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~---------~~ 224 (266)
T 3uxy_A 159 -----PGPGHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAEL---------GR 224 (266)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHHHHTTCCHHHHHHHH---------HT
T ss_pred -----CCCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhhhcccccchHHHHHH---------Hh
Confidence 2234578999999999998877644 58999999999998763211 011111111 22
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t 262 (520)
......+.+++|+|++++.++.. ......|+.+++.++..++
T Consensus 225 ~~p~~r~~~pedvA~~v~~L~s~---~~~~itG~~i~vdGG~~~s 266 (266)
T 3uxy_A 225 TVPLGRIAEPEDIADVVLFLASD---AARYLCGSLVEVNGGKAVA 266 (266)
T ss_dssp TSTTSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTCCCC
T ss_pred cCCCCCCcCHHHHHHHHHHHhCc---hhcCCcCCEEEECcCEeCC
Confidence 23445688999999999988862 1234679999999887543
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.9e-21 Score=186.80 Aligned_cols=222 Identities=12% Similarity=-0.049 Sum_probs=150.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC---
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--- 84 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~--- 84 (520)
||+||||||+|+||+++++.|+++| ++|+++| |+..+ +.. . +.+|++|.+++.++++.
T Consensus 1 mk~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~--------r~~~~--~~~-------~-~~~Dl~~~~~v~~~~~~~~~ 61 (257)
T 1fjh_A 1 MSIIVISGCATGIGAATRKVLEAAG-HQIVGID--------IRDAE--VIA-------D-LSTAEGRKQAIADVLAKCSK 61 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE--------SSSSS--EEC-------C-TTSHHHHHHHHHHHHTTCTT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEe--------CCchh--hcc-------c-cccCCCCHHHHHHHHHHhCC
Confidence 3689999999999999999999999 5999954 43321 110 1 66899999999999865
Q ss_pred -CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCCCCC-----c----
Q 010005 85 -ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDET-----L---- 150 (520)
Q Consensus 85 -~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~~E~-----~---- 150 (520)
+|+|||+||.......++..+++|+.++.++++++. +.+.+|+|++||...+...... +..++ .
T Consensus 62 ~id~lv~~Ag~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~--~~~~~~~~~~~~~~~ 139 (257)
T 1fjh_A 62 GMDGLVLCAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDK--NPLALALEAGEEAKA 139 (257)
T ss_dssp CCSEEEECCCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGG--CTTHHHHHHTCHHHH
T ss_pred CCCEEEECCCCCCCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhcccccc--chhhhhhcccchhhh
Confidence 499999999854245689999999999999999886 4566899999999887321110 00000 0
Q ss_pred ------cCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchH-HHHHHhcCCCceEEecCCCc
Q 010005 151 ------TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-LLVNLAKPGWTKFIIGSGEN 220 (520)
Q Consensus 151 ------~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~-~l~~~~~~g~~~~i~g~g~~ 220 (520)
..+..+...|+.||+..|.+.+.++.+ +|+++++++|+.+.++......+ ........ .. ...
T Consensus 140 ~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~-----~~--~~~ 212 (257)
T 1fjh_A 140 RAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIA-----KF--VPP 212 (257)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC--------------------------C--CCS
T ss_pred hhhhhcccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhhccchhHHHHHH-----hc--ccc
Confidence 012234568999999999999887654 68999999999999875432211 00000000 00 122
Q ss_pred ccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
...+.+++|+|++++.++.. ......|+.+++.++..
T Consensus 213 ~~~~~~~~dvA~~~~~l~~~---~~~~~tG~~~~vdgG~~ 249 (257)
T 1fjh_A 213 MGRRAEPSEMASVIAFLMSP---AASYVHGAQIVIDGGID 249 (257)
T ss_dssp TTSCCCTHHHHHHHHHHTSG---GGTTCCSCEEEESTTHH
T ss_pred cCCCCCHHHHHHHHHHHhCc---hhcCCcCCEEEECCCcc
Confidence 33578999999999988762 12356789999988753
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=9.1e-21 Score=183.23 Aligned_cols=216 Identities=17% Similarity=0.105 Sum_probs=156.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
+++|++|||||+|+||++++++|+++| ++|+++|+.. .+ ..+. . ..++..+.+|++|.+++.++++
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~--------~~~~~~~-~--~~~~~~~~~D~~~~~~~~~~~~~ 71 (246)
T 2ag5_A 4 LDGKVIILTAAAQGIGQAAALAFAREG-AKVIATDINE--------SKLQELE-K--YPGIQTRVLDVTKKKQIDQFANE 71 (246)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHGGGG-G--STTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCH--------HHHHHHH-h--ccCceEEEeeCCCHHHHHHHHHH
Confidence 457899999999999999999999999 5999965432 21 0111 1 1267899999999998887654
Q ss_pred --CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCCCCCc
Q 010005 84 --GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDETL 150 (520)
Q Consensus 84 --~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~ 150 (520)
++|+|||+||... ...+++..+++|+.++.++++++. +.+.+++|++||...+...
T Consensus 72 ~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 140 (246)
T 2ag5_A 72 VERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKG----------- 140 (246)
T ss_dssp CSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBC-----------
T ss_pred hCCCCEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcCC-----------
Confidence 6899999999722 234567789999999999999875 3467799999998775211
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch------HHHHHHhcCCCceEEecCCCcc
Q 010005 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV------PLLVNLAKPGWTKFIIGSGENM 221 (520)
Q Consensus 151 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~------~~l~~~~~~g~~~~i~g~g~~~ 221 (520)
..+...|+.+|+..|.+.+.++.+ +|++++++||+.+++|...... .......... ...
T Consensus 141 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 208 (246)
T 2ag5_A 141 ---VVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKR---------QKT 208 (246)
T ss_dssp ---CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHT---------CTT
T ss_pred ---CCCCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhhhhcccCcHHHHHHHHhc---------CCC
Confidence 014568999999999998887643 5899999999999987422111 1111111111 112
Q ss_pred cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..+.+++|+|++++.++.. ......|+.+++.++.
T Consensus 209 ~~~~~~~dvA~~v~~l~s~---~~~~~tG~~i~vdgG~ 243 (246)
T 2ag5_A 209 GRFATAEEIAMLCVYLASD---ESAYVTGNPVIIDGGW 243 (246)
T ss_dssp SSCEEHHHHHHHHHHHHSG---GGTTCCSCEEEECTTG
T ss_pred CCCCCHHHHHHHHHHHhCc---cccCCCCCEEEECCCc
Confidence 3477899999999988751 1234678999998864
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=6.3e-21 Score=187.76 Aligned_cols=227 Identities=12% Similarity=0.036 Sum_probs=157.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
++++++|||||+|+||+++++.|+++| ++|+++|+.. ... ...+.+ ...++..+.+|++|.+++.+++
T Consensus 20 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~ 90 (277)
T 2rhc_B 20 QDSEVALVTGATSGIGLEIARRLGKEG-LRVFVCARGE--------EGLRTTLKELREAGVEADGRTCDVRSVPEIEALV 90 (277)
T ss_dssp TTSCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHH
Confidence 345799999999999999999999999 5999955432 100 000000 1235788999999999888777
Q ss_pred c-------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHC------CCCEEEEeecccccccCCCC
Q 010005 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC------KVRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~------gvkr~V~~SS~~vyg~~~~~ 142 (520)
+ ++|+|||+||... ...+++..+++|+.|+.++++++... +.+++|++||...+.
T Consensus 91 ~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~----- 165 (277)
T 2rhc_B 91 AAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQ----- 165 (277)
T ss_dssp HHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTS-----
T ss_pred HHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECcccccc-----
Confidence 6 6899999999721 22345788999999999999997765 567999999987652
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcC--CCceEEecC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKP--GWTKFIIGS 217 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~--g~~~~i~g~ 217 (520)
+..+...|+.+|+..|.+.+.++.+ .|++++++||+.++++........+...... +........
T Consensus 166 ----------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (277)
T 2rhc_B 166 ----------GVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITA 235 (277)
T ss_dssp ----------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred ----------CCCCCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhhhhhhhcccccccchHHHHHHHHh
Confidence 1234568999999999988876543 6899999999999876422111100000000 000000011
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..+...+++++|+|++++.++.. ......|+.++++++.
T Consensus 236 ~~p~~r~~~~~dvA~~v~~l~s~---~~~~~tG~~~~vdGG~ 274 (277)
T 2rhc_B 236 RVPIGRYVQPSEVAEMVAYLIGP---GAAAVTAQALNVCGGL 274 (277)
T ss_dssp HSTTSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTC
T ss_pred cCCCCCCcCHHHHHHHHHHHhCc---hhcCCCCcEEEECCCc
Confidence 12334688999999999988761 1134678999998864
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-20 Score=183.25 Aligned_cols=217 Identities=12% Similarity=0.081 Sum_probs=160.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
.++|++|||||+|.||++++++|+++| ++|++.|+.. ... ...+.+ ..+...+.+|++|.+++.++++
T Consensus 7 l~gk~~lVTGas~gIG~a~a~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~ 76 (248)
T 3op4_A 7 LEGKVALVTGASRGIGKAIAELLAERG-AKVIGTATSE--------SGAQAISDYL-GDNGKGMALNVTNPESIEAVLKA 76 (248)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSH--------HHHHHHHHHH-GGGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHh-cccceEEEEeCCCHHHHHHHHHH
Confidence 356899999999999999999999999 5999955432 100 000111 1246789999999998888776
Q ss_pred ------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCCC
Q 010005 84 ------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 ------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|++||+||.. ....+++..+++|+.|+.++.+++.. .+..++|++||...+.
T Consensus 77 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~--------- 147 (248)
T 3op4_A 77 ITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTM--------- 147 (248)
T ss_dssp HHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH---------
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcC---------
Confidence 789999999972 13356678999999999999998754 4567999999987762
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.+++|+.+..+......+......... .+...
T Consensus 148 ------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~---------~p~~r 212 (248)
T 3op4_A 148 ------GNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALNDEQRTATLAQ---------VPAGR 212 (248)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTTTSCHHHHHHHHHT---------CTTCS
T ss_pred ------CCCCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhhhcCHHHHHHHHhc---------CCCCC
Confidence 2234678999999988888776543 68999999999999876544333322222221 23346
Q ss_pred cccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+.+++|+|++++.++.. ......|+.+++.++.
T Consensus 213 ~~~p~dva~~v~~L~s~---~~~~itG~~i~vdgG~ 245 (248)
T 3op4_A 213 LGDPREIASAVAFLASP---EAAYITGETLHVNGGM 245 (248)
T ss_dssp CBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTS
T ss_pred CcCHHHHHHHHHHHcCC---ccCCccCcEEEECCCe
Confidence 78899999999988751 1235679999998865
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.1e-20 Score=178.83 Aligned_cols=211 Identities=14% Similarity=0.079 Sum_probs=151.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
+++|+||||||+|+||++++++|+++| ++|+++++ ++.+ +. .+..+.+|++|.+++.++++
T Consensus 13 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r--------~~~~--~~------~~~~~~~D~~~~~~~~~~~~~~ 75 (247)
T 1uzm_A 13 FVSRSVLVTGGNRGIGLAIAQRLAADG-HKVAVTHR--------GSGA--PK------GLFGVEVDVTDSDAVDRAFTAV 75 (247)
T ss_dssp CCCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEES--------SSCC--CT------TSEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeC--------ChHH--HH------HhcCeeccCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 59999544 3321 11 12248899999998887775
Q ss_pred -----CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|++||+||.. ....+++..+++|+.++.++++++. +.+.+++|++||...+.
T Consensus 76 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------- 145 (247)
T 1uzm_A 76 EEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLW---------- 145 (247)
T ss_dssp HHHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC------------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhcc----------
Confidence 589999999972 2234667899999999999999875 35678999999987652
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (520)
+..+...|+.||+..|.+.+.++.+ +|+++++++|+.+.++......+......... .....+
T Consensus 146 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~---------~p~~~~ 211 (247)
T 1uzm_A 146 -----GIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRALDERIQQGALQF---------IPAKRV 211 (247)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHSCHHHHHHHGGG---------CTTCSC
T ss_pred -----CCCCChhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchhhcCHHHHHHHHhc---------CCCCCC
Confidence 1123568999999999888776543 58999999999998653211111111111111 122357
Q ss_pred ccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 225 i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
.+++|+|++++.++.. ......|+.+++.++..
T Consensus 212 ~~~~dvA~~~~~l~s~---~~~~~~G~~i~vdgG~~ 244 (247)
T 1uzm_A 212 GTPAEVAGVVSFLASE---DASYISGAVIPVDGGMG 244 (247)
T ss_dssp BCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTTT
T ss_pred cCHHHHHHHHHHHcCc---cccCCcCCEEEECCCcc
Confidence 8999999999988761 12346789999988754
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=185.38 Aligned_cols=221 Identities=15% Similarity=0.125 Sum_probs=159.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
..++|++|||||+|+||++++++|+++| ++|+++|+.. .. ....+. ...++..+.+|++|.+++.++++
T Consensus 24 ~l~~k~vlVTGas~GIG~aia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~ 93 (277)
T 4dqx_A 24 DLNQRVCIVTGGGSGIGRATAELFAKNG-AYVVVADVNE--------DAAVRVANE-IGSKAFGVRVDVSSAKDAESMVE 93 (277)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSH--------HHHHHHHHH-HCTTEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHH-hCCceEEEEecCCCHHHHHHHHH
Confidence 3456899999999999999999999999 5999965432 10 000001 12467889999999998888776
Q ss_pred -------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCC
Q 010005 84 -------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 -------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|++||+||.. ....+++..+++|+.|+.++.+++. +.+..++|++||...+.
T Consensus 94 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------- 165 (277)
T 4dqx_A 94 KTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATS-------- 165 (277)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTS--------
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCc--------
Confidence 689999999972 2234567788999999999988884 44556999999988762
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCC------CchHHHHHHhcCCCceEEec
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIG 216 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~------~~~~~l~~~~~~g~~~~i~g 216 (520)
+..+...|+.||+..|.+.+.++.+ +|+++.+++||.+.++... .-....... ..
T Consensus 166 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~---------~~ 229 (277)
T 4dqx_A 166 -------AIADRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRSD---------FN 229 (277)
T ss_dssp -------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHHTCSCHHHHHHH---------HH
T ss_pred -------CCCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCchhhhhcccccchhHHHHH---------HH
Confidence 2234578999999999998877543 5899999999999865310 000111111 12
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC
Q 010005 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t 262 (520)
.......+.+++|+|++++.++.. ......|+.+++.++..++
T Consensus 230 ~~~~~~r~~~pedvA~~v~~L~s~---~~~~itG~~i~vdGG~~~~ 272 (277)
T 4dqx_A 230 ARAVMDRMGTAEEIAEAMLFLASD---RSRFATGSILTVDGGSSIG 272 (277)
T ss_dssp TTSTTCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESSSSSSC
T ss_pred hcCcccCCcCHHHHHHHHHHHhCC---ccCCCcCCEEEECCchhhh
Confidence 223345678899999999988861 1234679999999886543
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.9e-21 Score=187.46 Aligned_cols=225 Identities=16% Similarity=0.083 Sum_probs=158.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
..++|++|||||+|+||++++++|+++| ++|+++|+.. .. ....+.+ ..++..+.+|++|.+++.++++
T Consensus 26 ~l~gk~vlVTGas~gIG~aia~~la~~G-~~V~~~~r~~--------~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~ 95 (277)
T 3gvc_A 26 DLAGKVAIVTGAGAGIGLAVARRLADEG-CHVLCADIDG--------DAADAAATKI-GCGAAACRVDVSDEQQIIAMVD 95 (277)
T ss_dssp -CTTCEEEETTTTSTHHHHHHHHHHHTT-CEEEEEESSH--------HHHHHHHHHH-CSSCEEEECCTTCHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHc-CCcceEEEecCCCHHHHHHHHH
Confidence 3456899999999999999999999999 5999965432 10 0000111 3467899999999998887775
Q ss_pred -------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCC
Q 010005 84 -------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 -------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|++||+||.. ....+++..+++|+.|+.++.+++.. .+..++|++||...+.
T Consensus 96 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~-------- 167 (277)
T 3gvc_A 96 ACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQV-------- 167 (277)
T ss_dssp HHHHHHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS--------
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc--------
Confidence 689999999972 23356678999999999999988754 5567899999987652
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecC---CC
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGS---GE 219 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~---g~ 219 (520)
+..+...|+.||+..|.+.+.++.+ +|+++.+++|+.+++|... ..... ..+........ ..
T Consensus 168 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~----~~~~~-~~~~~~~~~~~~~~~~ 235 (277)
T 3gvc_A 168 -------AVGGTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQQ----TAMAM-FDGALGAGGARSMIAR 235 (277)
T ss_dssp -------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH----HHHTC-C------CCHHHHHHH
T ss_pred -------CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCchHH----Hhhhc-chhhHHHHhhhhhhhc
Confidence 2234578999999999998876543 6899999999999976321 00000 00000000000 01
Q ss_pred cccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC
Q 010005 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t 262 (520)
....+.+++|+|++++.++.. ......|+++++.++...+
T Consensus 236 ~~~r~~~pedvA~~v~~L~s~---~a~~itG~~i~vdGG~~~~ 275 (277)
T 3gvc_A 236 LQGRMAAPEEMAGIVVFLLSD---DASMITGTTQIADGGTIAA 275 (277)
T ss_dssp HHSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGGGS
T ss_pred cccCCCCHHHHHHHHHHHcCC---ccCCccCcEEEECCcchhc
Confidence 123578899999999988851 1245789999999876544
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.2e-20 Score=180.66 Aligned_cols=237 Identities=14% Similarity=0.067 Sum_probs=164.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccC----CCCCCCCCCC---C--CCCCCcEEEEecCCCHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLD----PSESNSLLPD---S--LSSGRAEYHQVDVRDIS 76 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~----r~~~~~~l~~---~--~~~~~v~~~~~Dl~d~~ 76 (520)
.+++++|||||+|+||++++++|+++| ++|+++|+....... +... .+.+ . ....++.++.+|++|++
T Consensus 11 l~gk~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~ 87 (278)
T 3sx2_A 11 LTGKVAFITGAARGQGRAHAVRLAADG-ADIIAVDLCDQIASVPYPLATPE--ELAATVKLVEDIGSRIVARQADVRDRE 87 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTCSSCCCCHH--HHHHHHHHHHHHTCCEEEEECCTTCHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEecccccccccccccchH--HHHHHHHHHHhcCCeEEEEeCCCCCHH
Confidence 356899999999999999999999999 599997764210000 0000 0000 0 01246889999999999
Q ss_pred HHHHHHc-------CCCEEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHC----C-CCEEEEeecccccccCCC
Q 010005 77 QIKKVLE-------GASTVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSH 141 (520)
Q Consensus 77 ~l~~~l~-------~~D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~----g-vkr~V~~SS~~vyg~~~~ 141 (520)
++.++++ ++|++||+||.. ....+++..+++|+.|+.++++++... + ..++|++||...+...
T Consensus 88 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~-- 165 (278)
T 3sx2_A 88 SLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGV-- 165 (278)
T ss_dssp HHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCC--
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCC--
Confidence 9888876 789999999982 234567889999999999999997542 2 4689999998876311
Q ss_pred CCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch-HHHH-HHhcCCCceEEec
Q 010005 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-PLLV-NLAKPGWTKFIIG 216 (520)
Q Consensus 142 ~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~-~~l~-~~~~~g~~~~i~g 216 (520)
.. +..+...|+.||+..+.+.+.++.+ +|+++.+++|+.+.++...... .... ............+
T Consensus 166 -----~~----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (278)
T 3sx2_A 166 -----GS----ADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINNEFTREWLAKMAAATDTPGAMG 236 (278)
T ss_dssp -----CC----SSHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHHHHHHHCC--CTTS
T ss_pred -----cc----CCCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccchhhhHHHHHhhccchhhhhhhhh
Confidence 00 1134567999999999998877543 5799999999999998755321 1111 1111111111223
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
+..+ ..+++++|+|++++.++.. ......|+.+++.++..
T Consensus 237 ~~~p-~~~~~p~dvA~~v~~l~s~---~~~~itG~~i~vdGG~~ 276 (278)
T 3sx2_A 237 NAMP-VEVLAPEDVANAVAWLVSD---QARYITGVTLPVDAGFL 276 (278)
T ss_dssp CSSS-CSSBCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTTT
T ss_pred hhcC-cCcCCHHHHHHHHHHHhCc---ccccccCCEEeECCCcc
Confidence 3334 6789999999999988751 12457899999988753
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-20 Score=183.00 Aligned_cols=212 Identities=15% Similarity=0.104 Sum_probs=157.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
..++|+||||||+|+||++++++|+++| ++|+++|+ +.... ......+.+|++|.+++.++++
T Consensus 11 ~~~~k~vlVTGas~GIG~aia~~l~~~G-~~V~~~~r--------~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~~ 74 (269)
T 3vtz_A 11 EFTDKVAIVTGGSSGIGLAVVDALVRYG-AKVVSVSL--------DEKSD-------VNVSDHFKIDVTNEEEVKEAVEK 74 (269)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEES--------CC--C-------TTSSEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeC--------Cchhc-------cCceeEEEecCCCHHHHHHHHHH
Confidence 3457999999999999999999999999 59998554 32211 1246789999999998888776
Q ss_pred ------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCCC
Q 010005 84 ------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 ------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|++||+||.. ....+++..+++|+.|+.++.+++.. .+..++|++||...|.
T Consensus 75 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--------- 145 (269)
T 3vtz_A 75 TTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYA--------- 145 (269)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS---------
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhcc---------
Confidence 689999999972 12345567889999999999998654 4567999999998873
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCCC--CceEEEEecCccccCCCCC-----------chHHHHHHhcCCCceE
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQ-----------LVPLLVNLAKPGWTKF 213 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~vyGp~~~~-----------~~~~l~~~~~~g~~~~ 213 (520)
+..+...|+.||+..|.+.+.++.+. ++++.+++||.+.++.... .........
T Consensus 146 ------~~~~~~~Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~------- 212 (269)
T 3vtz_A 146 ------ATKNAAAYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEW------- 212 (269)
T ss_dssp ------BCTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHH-------
T ss_pred ------CCCCChhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHH-------
Confidence 22345789999999999988876543 8999999999998763211 011111111
Q ss_pred EecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 214 i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.+......+.+++|+|++++.++.. ......|+++++.++.
T Consensus 213 --~~~~p~~r~~~pedvA~~v~~L~s~---~~~~itG~~i~vdGG~ 253 (269)
T 3vtz_A 213 --GRQHPMGRIGRPEEVAEVVAFLASD---RSSFITGACLTVDGGL 253 (269)
T ss_dssp --HHHSTTSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTG
T ss_pred --HhcCCCCCCcCHHHHHHHHHHHhCC---ccCCCcCcEEEECCCc
Confidence 1122345678899999999988862 1245779999999875
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-20 Score=179.86 Aligned_cols=207 Identities=14% Similarity=0.004 Sum_probs=144.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
++++|+||||+|+||+++++.|+++|. ++|+++++.... . ..+.+. ...++.++.+|++|.+++.++++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~----~---~~l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (250)
T 1yo6_A 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEK----A---TELKSI-KDSRVHVLPLTVTCDKSLDTFVSKV 73 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGG----C---HHHHTC-CCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHH----H---HHHHhc-cCCceEEEEeecCCHHHHHHHHHHH
Confidence 468999999999999999999999992 389996553210 0 011111 24578999999999998888876
Q ss_pred -------CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHHHHC----------C-----CCEEEEeecc
Q 010005 84 -------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC----------K-----VRRLVYNSTA 133 (520)
Q Consensus 84 -------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa~~~----------g-----vkr~V~~SS~ 133 (520)
++|+|||+||... ...+++..+++|+.++.++++++... + ..++|++||.
T Consensus 74 ~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~ 153 (250)
T 1yo6_A 74 GEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSG 153 (250)
T ss_dssp HHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCG
T ss_pred HHhcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccC
Confidence 8999999998732 22456778999999999999887653 4 6799999999
Q ss_pred cccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCC
Q 010005 134 DVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGW 210 (520)
Q Consensus 134 ~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~ 210 (520)
..+.... .++. +..+...|+.+|+..|.+++.++.+ .|++++++||+.+.++....
T Consensus 154 ~~~~~~~------~~~~--~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~------------- 212 (250)
T 1yo6_A 154 LGSITDN------TSGS--AQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGK------------- 212 (250)
T ss_dssp GGCSTTC------CSTT--SSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC--------------------
T ss_pred ccccCCc------cccc--ccCCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCCCC-------------
Confidence 8763221 1111 2245678999999999998887654 38999999999998764211
Q ss_pred ceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEe
Q 010005 211 TKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFIT 256 (520)
Q Consensus 211 ~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~ 256 (520)
..+++.+|+|++++.++... .....|+.+.+.
T Consensus 213 -----------~~~~~~~~~a~~~~~~~~~~---~~~~~G~~~~~~ 244 (250)
T 1yo6_A 213 -----------NAALTVEQSTAELISSFNKL---DNSHNGRFFMRN 244 (250)
T ss_dssp -----------------HHHHHHHHHHHTTC---CGGGTTCEEETT
T ss_pred -----------CCCCCHHHHHHHHHHHHhcc---cccCCCeEEEEC
Confidence 14578999999999988721 122456555443
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.9e-21 Score=186.38 Aligned_cols=217 Identities=14% Similarity=0.125 Sum_probs=154.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
.++|++|||||+|+||++++++|+++| ++|++.|+.. .+ ....+. ...++..+.+|++|.+++.++++
T Consensus 25 l~gk~vlVTGas~gIG~aia~~la~~G-~~V~~~~r~~--------~~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~ 94 (266)
T 3grp_A 25 LTGRKALVTGATGGIGEAIARCFHAQG-AIVGLHGTRE--------DKLKEIAAD-LGKDVFVFSANLSDRKSIKQLAEV 94 (266)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHH-HCSSEEEEECCTTSHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHH-hCCceEEEEeecCCHHHHHHHHHH
Confidence 346899999999999999999999999 5999855432 20 000001 12468899999999998888776
Q ss_pred ------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCC
Q 010005 84 ------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 ------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|++||+||.. ....+++..+++|+.|+.++.+++ ++.+..++|++||...+.
T Consensus 95 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~--------- 165 (266)
T 3grp_A 95 AEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVV--------- 165 (266)
T ss_dssp HHHHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC-------------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcC---------
Confidence 689999999972 223456788999999976666655 445667999999987652
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.+++|+.+.++......+......... .+...
T Consensus 166 ------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~---------~p~~r 230 (266)
T 3grp_A 166 ------GNPGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDKLNEKQKEAIMAM---------IPMKR 230 (266)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHTCCHHHHHHHHTT---------CTTCS
T ss_pred ------CCCCchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhhccCHHHHHHHHhc---------CCCCC
Confidence 1224568999999998888776543 58999999999998764333223333333332 23456
Q ss_pred cccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+.+++|+|++++.++.. ......|+++++.++.
T Consensus 231 ~~~~edvA~~v~~L~s~---~~~~itG~~i~vdGG~ 263 (266)
T 3grp_A 231 MGIGEEIAFATVYLASD---EAAYLTGQTLHINGGM 263 (266)
T ss_dssp CBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTC
T ss_pred CcCHHHHHHHHHHHhCc---cccCccCCEEEECCCe
Confidence 77899999999988751 1234679999998865
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-20 Score=181.29 Aligned_cols=218 Identities=15% Similarity=0.099 Sum_probs=154.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
+++|++|||||+|+||++++++|+++| ++|+++|+.. .+ ....+.+ ..++..+.+|++|.+++.++++
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~ 72 (254)
T 1hdc_A 3 LSGKTVIITGGARGLGAEAARQAVAAG-ARVVLADVLD--------EEGAATAREL-GDAARYQHLDVTIEEDWQRVVAY 72 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHTT-GGGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHh-CCceeEEEecCCCHHHHHHHHHH
Confidence 356899999999999999999999999 5999955432 10 0000111 2357889999999998888876
Q ss_pred ------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHH----HHHHHHHCCCCEEEEeecccccccCCCCCCCC
Q 010005 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKN----VVTACRECKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~----ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|++||+||... ...+++..+++|+.++.+ +++.+++.+.+++|++||...+.
T Consensus 73 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 143 (254)
T 1hdc_A 73 AREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLM--------- 143 (254)
T ss_dssp HHHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS---------
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhcc---------
Confidence 7999999999721 234567789999999985 45555666778999999998762
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
+..+...|+.+|+..|.+.+.++.+ +|++++++||+.++++.. . ...... ............
T Consensus 144 ------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~----~----~~~~~~-~~~~~~~~p~~~ 208 (254)
T 1hdc_A 144 ------GLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMT----A----ETGIRQ-GEGNYPNTPMGR 208 (254)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH----H----HHTCCC-STTSCTTSTTSS
T ss_pred ------CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCccc----c----ccchhH-HHHHHhcCCCCC
Confidence 1234568999999999998877543 589999999999997631 1 111000 000011112334
Q ss_pred cc-cHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 224 FT-YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 224 ~i-~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
+. +++|+|++++.++.. ......|+.+++.++..
T Consensus 209 ~~~~~~dvA~~v~~l~s~---~~~~~tG~~~~vdgG~~ 243 (254)
T 1hdc_A 209 VGNEPGEIAGAVVKLLSD---TSSYVTGAELAVDGGWT 243 (254)
T ss_dssp CB-CHHHHHHHHHHHHSG---GGTTCCSCEEEESTTTT
T ss_pred CCCCHHHHHHHHHHHhCc---hhcCCCCCEEEECCCcc
Confidence 67 899999999988761 12346789999988753
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.84 E-value=9e-21 Score=184.79 Aligned_cols=225 Identities=10% Similarity=0.028 Sum_probs=152.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
.+++++|||||+|+||++++++|+++| ++|+++|+. ..+. .+.+.+ ..++..+.+|++|.+++.++++
T Consensus 7 l~~k~vlITGas~gIG~~~a~~l~~~G-~~V~~~~r~--------~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~ 76 (261)
T 3n74_A 7 LEGKVALITGAGSGFGEGMAKRFAKGG-AKVVIVDRD--------KAGAERVAGEI-GDAALAVAADISKEADVDAAVEA 76 (261)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESC--------HHHHHHHHHHH-CTTEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCC--------HHHHHHHHHHh-CCceEEEEecCCCHHHHHHHHHH
Confidence 456899999999999999999999999 599995543 2210 000111 2467899999999998887776
Q ss_pred ------CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHHHHCC--------CCEEEEeecccccccCCC
Q 010005 84 ------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRECK--------VRRLVYNSTADVVFDGSH 141 (520)
Q Consensus 84 ------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa~~~g--------vkr~V~~SS~~vyg~~~~ 141 (520)
++|++||+||... ...+++..+++|+.++.++.+++...- ..++|++||...+.
T Consensus 77 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~---- 152 (261)
T 3n74_A 77 ALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGR---- 152 (261)
T ss_dssp HHHHHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTS----
T ss_pred HHHhcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcC----
Confidence 6899999999732 334567789999999999988875431 34799999987752
Q ss_pred CCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCC
Q 010005 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 142 ~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g 218 (520)
+......|+.+|+..|.+.+.++.+ +|+++.+++|+.+.++........... .......+.
T Consensus 153 -----------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~-----~~~~~~~~~ 216 (261)
T 3n74_A 153 -----------PRPNLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTTFMGEDSE-----EIRKKFRDS 216 (261)
T ss_dssp -----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC------------------------------
T ss_pred -----------CCCCccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhhhcccCcH-----HHHHHHhhc
Confidence 2234567999999999998877654 689999999999988754332211000 111122233
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCH
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKF 263 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~ 263 (520)
.+...+++++|+|++++.++.. ......|+.+++.++..++-
T Consensus 217 ~~~~~~~~~~dva~~~~~l~s~---~~~~itG~~i~vdgG~~~~~ 258 (261)
T 3n74_A 217 IPMGRLLKPDDLAEAAAFLCSP---QASMITGVALDVDGGRSIGG 258 (261)
T ss_dssp CTTSSCCCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTTTC--
T ss_pred CCcCCCcCHHHHHHHHHHHcCC---cccCcCCcEEEecCCcccCC
Confidence 4456789999999999988751 12457899999999876654
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=180.18 Aligned_cols=209 Identities=11% Similarity=0.122 Sum_probs=152.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCc-------EEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHH
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKC-------IVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQ 77 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~-------~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~ 77 (520)
+|+||||||+|+||++++++|+++| + +|+++++. ... ..+.+.+ ...++.++.+|++|.++
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G-~~~~~~~~~V~~~~r~--------~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 72 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAA-RHHPDFEPVLVLSSRT--------AADLEKISLECRAEGALTDTITADISDMAD 72 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHT-TTCTTCCEEEEEEESC--------HHHHHHHHHHHHTTTCEEEEEECCTTSHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhc-CcccccceEEEEEeCC--------HHHHHHHHHHHHccCCeeeEEEecCCCHHH
Confidence 5789999999999999999999999 5 88885543 210 0000000 12357889999999998
Q ss_pred HHHHHc-------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccC
Q 010005 78 IKKVLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDG 139 (520)
Q Consensus 78 l~~~l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~ 139 (520)
+.++++ ++|+|||+||... ...+++..+++|+.++.++++++.. .+.+++|++||...+.
T Consensus 73 v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~-- 150 (244)
T 2bd0_A 73 VRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATK-- 150 (244)
T ss_dssp HHHHHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS--
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcC--
Confidence 888876 6999999999721 2345677899999999999998843 4678999999998863
Q ss_pred CCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhc---CCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEec
Q 010005 140 SHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIG 216 (520)
Q Consensus 140 ~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~---~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g 216 (520)
+..+...|+.+|+..|.+.+.++ ..+|++++++||+.++++...... .
T Consensus 151 -------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~----------~------ 201 (244)
T 2bd0_A 151 -------------AFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVD----------D------ 201 (244)
T ss_dssp -------------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCC----------S------
T ss_pred -------------CCCCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhcc----------c------
Confidence 22345789999999999886654 347999999999999998643210 0
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
. . ...+++++|+|++++.++.. ......++.+...+++.+
T Consensus 202 ~-~-~~~~~~~~dva~~~~~l~~~---~~~~~~g~~~~~~~~~~~ 241 (244)
T 2bd0_A 202 E-M-QALMMMPEDIAAPVVQAYLQ---PSRTVVEEIILRPTSGDI 241 (244)
T ss_dssp T-T-GGGSBCHHHHHHHHHHHHTS---CTTEEEEEEEEEETTCCC
T ss_pred c-c-cccCCCHHHHHHHHHHHHhC---CccccchheEEecccccc
Confidence 0 0 23689999999999988862 112344555555554443
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-20 Score=183.21 Aligned_cols=221 Identities=12% Similarity=0.061 Sum_probs=153.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHH----
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL---- 82 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l---- 82 (520)
++|+++||||+|+||++++++|+++| ++|+++|+.... +. .....+.. ...++..+.+|++|++++.+++
T Consensus 20 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~-~~--~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 93 (273)
T 1ae1_A 20 KGTTALVTGGSKGIGYAIVEELAGLG-ARVYTCSRNEKE-LD--ECLEIWRE--KGLNVEGSVCDLLSRTERDKLMQTVA 93 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHH-HH--HHHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCcchHHHHHHHHHHHCC-CEEEEEeCCHHH-HH--HHHHHHHh--cCCceEEEECCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 599995543210 00 00000000 1246788999999999888777
Q ss_pred ----cCCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCCC
Q 010005 83 ----EGASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 83 ----~~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
.++|++||+||.. ....+++..+++|+.++.++++++. +.+..++|++||...+.
T Consensus 94 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~---------- 163 (273)
T 1ae1_A 94 HVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFS---------- 163 (273)
T ss_dssp HHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTS----------
T ss_pred HHcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcC----------
Confidence 4689999999972 1234567788999999999999884 45667999999998873
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchH------HHHHHhcCCCceEEecCC
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP------LLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~------~l~~~~~~g~~~~i~g~g 218 (520)
+..+...|+.||+..|.+.+.++.+ +|+++++++|+.++++....... .........
T Consensus 164 -----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~--------- 229 (273)
T 1ae1_A 164 -----ALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVK--------- 229 (273)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHH---------
T ss_pred -----CCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhcccCcHHHHHHHHhc---------
Confidence 1134568999999999998877543 58999999999999986432111 111111111
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
.....+.+++|+|++++.++.. ......|+.+++.++..
T Consensus 230 ~p~~r~~~p~dvA~~v~~l~s~---~~~~~tG~~i~vdGG~~ 268 (273)
T 1ae1_A 230 TPMGRAGKPQEVSALIAFLCFP---AASYITGQIIWADGGFT 268 (273)
T ss_dssp STTCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred CCCCCCcCHHHHHHHHHHHhCc---cccCcCCCEEEECCCcc
Confidence 1123477899999999988751 12346789999988753
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.5e-20 Score=179.79 Aligned_cols=223 Identities=16% Similarity=0.080 Sum_probs=156.4
Q ss_pred CCCCeEEEEcCCCh-hHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGF-VGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGf-IG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
.+++++|||||+|+ ||++++++|+++| ++|+++|+.... +. .....+. .....++.++.+|++|.+++.++++
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G-~~V~~~~r~~~~-~~--~~~~~l~-~~~~~~~~~~~~Dl~~~~~v~~~~~~ 94 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEG-ADVVISDYHERR-LG--ETRDQLA-DLGLGRVEAVVCDVTSTEAVDALITQ 94 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTT-CEEEEEESCHHH-HH--HHHHHHH-TTCSSCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCC-CEEEEecCCHHH-HH--HHHHHHH-hcCCCceEEEEeCCCCHHHHHHHHHH
Confidence 34689999999985 9999999999999 599996553210 00 0000110 1123478999999999998887775
Q ss_pred ------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHC-----CCCEEEEeecccccccCCCCCCC
Q 010005 84 ------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC-----KVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 ------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~-----gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|+|||+||.. ....+++..+++|+.++.++.+++... +..++|++||...+.
T Consensus 95 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~-------- 166 (266)
T 3o38_A 95 TVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWR-------- 166 (266)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTC--------
T ss_pred HHHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcC--------
Confidence 679999999972 133456778999999999999998764 456899999987752
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
+..+...|+.+|+..|.+.+.++.+ +|+++.+++|+.+.++....... ..............
T Consensus 167 -------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~--------~~~~~~~~~~~~~~ 231 (266)
T 3o38_A 167 -------AQHSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKTSS--------SELLDRLASDEAFG 231 (266)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC-------------------------CCTTS
T ss_pred -------CCCCCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhccCc--------HHHHHHHHhcCCcC
Confidence 2235678999999999998877654 68999999999998775322111 11111222334456
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.+.+++|+|++++.++.. ......|+++++.++.
T Consensus 232 r~~~~~dva~~i~~l~s~---~~~~~tG~~i~vdgG~ 265 (266)
T 3o38_A 232 RAAEPWEVAATIAFLASD---YSSYMTGEVVSVSSQR 265 (266)
T ss_dssp SCCCHHHHHHHHHHHHSG---GGTTCCSCEEEESSCC
T ss_pred CCCCHHHHHHHHHHHcCc---cccCccCCEEEEcCCc
Confidence 788999999999988862 1245789999998864
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-20 Score=181.67 Aligned_cols=225 Identities=14% Similarity=0.146 Sum_probs=160.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
.+++|++|||||+|.||++++++|.++| ++|+++|+.... +. .....+.. ...++..+.+|++|.+++.++++
T Consensus 3 ~l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~-~~--~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~ 76 (257)
T 3imf_A 3 AMKEKVVIITGGSSGMGKGMATRFAKEG-ARVVITGRTKEK-LE--EAKLEIEQ--FPGQILTVQMDVRNTDDIQKMIEQ 76 (257)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HH--HHHHHHCC--STTCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHH-HH--HHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHH
Confidence 3467899999999999999999999999 589996543210 00 00000111 12468899999999998887775
Q ss_pred ------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHH-----HHCCCCEEEEeecccccccCCCCCCC
Q 010005 84 ------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC-----RECKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 ------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa-----~~~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|++||+||.. ....+++..+++|+.++.++.+++ ++.+..++|++||...+.
T Consensus 77 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------- 148 (257)
T 3imf_A 77 IDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWD-------- 148 (257)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGS--------
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhcc--------
Confidence 689999999961 233466789999999999999998 444467999999988762
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcC----CCCceEEEEecCccccCCCCCch---HHHHHHhcCCCceEEecCC
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN----IDGLLTCALRPSNVFGPGDTQLV---PLLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~----~~gi~~~ilRp~~vyGp~~~~~~---~~l~~~~~~g~~~~i~g~g 218 (520)
+..+...|+.||+..+.+.+.++. .+|+++.+++||.+.++...... +.+.+... ..
T Consensus 149 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~---------~~ 212 (257)
T 3imf_A 149 -------AGPGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWISEEMAKRTI---------QS 212 (257)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC-------CCSHHHH---------TT
T ss_pred -------CCCCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhcccCHHHHHHHH---------hc
Confidence 223456899999999998887763 35899999999999988643211 10111111 11
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t 262 (520)
.....+..++|+|++++.++.. ......|+.+++.++..++
T Consensus 213 ~p~~r~~~pedvA~~v~~L~s~---~~~~itG~~i~vdGG~~~~ 253 (257)
T 3imf_A 213 VPLGRLGTPEEIAGLAYYLCSD---EAAYINGTCMTMDGGQHLH 253 (257)
T ss_dssp STTCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTTTSC
T ss_pred CCCCCCcCHHHHHHHHHHHcCc---hhcCccCCEEEECCCcccC
Confidence 2334578899999999988861 1234689999999987654
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.8e-21 Score=191.71 Aligned_cols=240 Identities=20% Similarity=0.180 Sum_probs=170.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC--CCCC---CCC--CCCCcEEEEecCCCHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN--SLLP---DSL--SSGRAEYHQVDVRDISQI 78 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~--~~l~---~~~--~~~~v~~~~~Dl~d~~~l 78 (520)
.+++++|||||+|.||+++++.|+++| ++|++.|+... ..+.... .... +.+ ...++..+.+|++|.+++
T Consensus 25 l~gk~vlVTGas~GIG~aia~~la~~G-~~Vv~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v 101 (322)
T 3qlj_A 25 VDGRVVIVTGAGGGIGRAHALAFAAEG-ARVVVNDIGVG--LDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQA 101 (322)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECCCBC--TTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCccc--ccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHH
Confidence 346889999999999999999999999 59999776421 1111110 0000 000 124577899999999988
Q ss_pred HHHHc-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHCCC----------CEEEEeeccc
Q 010005 79 KKVLE-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRECKV----------RRLVYNSTAD 134 (520)
Q Consensus 79 ~~~l~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~gv----------kr~V~~SS~~ 134 (520)
.++++ ++|++||+||.. ....+++..+++|+.|+.++++++...-. .++|++||..
T Consensus 102 ~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~ 181 (322)
T 3qlj_A 102 AGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGA 181 (322)
T ss_dssp HHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHH
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHH
Confidence 88776 789999999972 23346678999999999999998854311 4899999988
Q ss_pred ccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCc
Q 010005 135 VVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT 211 (520)
Q Consensus 135 vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~ 211 (520)
.+. +..+...|+.||+..+.+.+.++.+ +|+++.+++|+ +..+.........
T Consensus 182 ~~~---------------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~~~~~~--------- 236 (322)
T 3qlj_A 182 GLQ---------------GSVGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTETVFAEM--------- 236 (322)
T ss_dssp HHH---------------CBTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCCSCCC----------
T ss_pred Hcc---------------CCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccchhhhhhh---------
Confidence 762 1234568999999999998877654 68999999999 6655432211100
Q ss_pred eEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc-----------------CHHHHHHHHHHHc
Q 010005 212 KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI-----------------KFWDFLSIILEGL 274 (520)
Q Consensus 212 ~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~-----------------t~~el~~~i~~~~ 274 (520)
.........++.++|+|++++.++.. ......|+.+++.++... ++.|+++.+.+.+
T Consensus 237 ---~~~~~~~~~~~~pedva~~v~~L~s~---~~~~itG~~i~vdGG~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~ 310 (322)
T 3qlj_A 237 ---MATQDQDFDAMAPENVSPLVVWLGSA---EARDVTGKVFEVEGGKIRVAEGWAHGPQIDKGARWDPAELGPVVADLL 310 (322)
T ss_dssp ----------CCTTCGGGTHHHHHHHTSG---GGGGCCSCEEEEETTEEEEEECCEEEEEEECSSCCCGGGHHHHHHHHH
T ss_pred ---hhccccccCCCCHHHHHHHHHHHhCc---cccCCCCCEEEECCCccccCCCcccccccCccCCCCHHHHHHHHHHHh
Confidence 01112234567899999999988751 123468999999887643 7899999999999
Q ss_pred CCCCC
Q 010005 275 GYQRP 279 (520)
Q Consensus 275 g~~~~ 279 (520)
|.+.+
T Consensus 311 ~~~~~ 315 (322)
T 3qlj_A 311 GKARP 315 (322)
T ss_dssp HHSCC
T ss_pred hccCC
Confidence 86544
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-20 Score=184.65 Aligned_cols=221 Identities=13% Similarity=0.050 Sum_probs=158.5
Q ss_pred CCCCeEEEEcCC--ChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCCCCCCCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGat--GfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~-~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++|+||||||+ |+||++++++|.++| ++|+++|+.. +... ...+... .++..++.+|++|.+++.+++
T Consensus 7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G-~~V~~~~r~~-----~~~~~~~~l~~~--~~~~~~~~~D~~~~~~v~~~~ 78 (265)
T 1qsg_A 7 LSGKRILVTGVASKLSIAYGIAQAMHREG-AELAFTYQND-----KLKGRVEEFAAQ--LGSDIVLQCDVAEDASIDTMF 78 (265)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTT-CEEEEEESST-----TTHHHHHHHHHH--TTCCCEEECCTTCHHHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEEcCcH-----HHHHHHHHHHHh--cCCcEEEEccCCCHHHHHHHH
Confidence 446899999999 999999999999999 5999965432 0000 0001000 123478899999999888887
Q ss_pred c-------CCCEEEEcccCC------------CCCcchhhHHhhhHHHHHHHHHHHHHCC--CCEEEEeecccccccCCC
Q 010005 83 E-------GASTVFYVDATD------------LNTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSH 141 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~------------~~~~~~~~~~~~Nv~gt~~ll~aa~~~g--vkr~V~~SS~~vyg~~~~ 141 (520)
+ ++|+|||+||.. ....+++..+++|+.++.++++++...- -.++|++||...+.
T Consensus 79 ~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~---- 154 (265)
T 1qsg_A 79 AELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER---- 154 (265)
T ss_dssp HHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS----
T ss_pred HHHHHHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhcc----
Confidence 6 579999999973 2334567799999999999999998752 24899999987752
Q ss_pred CCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCC--chHHHHHHhcCCCceEEec
Q 010005 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKPGWTKFIIG 216 (520)
Q Consensus 142 ~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~--~~~~l~~~~~~g~~~~i~g 216 (520)
+..+...|+.||+..|.+.+.++.+ +|+++++++|+.++++.... ..+.+......+.+
T Consensus 155 -----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p----- 218 (265)
T 1qsg_A 155 -----------AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTP----- 218 (265)
T ss_dssp -----------BCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHST-----
T ss_pred -----------CCCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhcccccHHHHHHHHhcCC-----
Confidence 1234568999999999998877543 58999999999999986432 12333332222111
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
...+.+++|+|++++.++.. ......|+.+++.++..+
T Consensus 219 ----~~~~~~~~dva~~v~~l~s~---~~~~~tG~~~~vdgG~~~ 256 (265)
T 1qsg_A 219 ----IRRTVTIEDVGNSAAFLCSD---LSAGISGEVVHVDGGFSI 256 (265)
T ss_dssp ----TSSCCCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTGGG
T ss_pred ----CCCCCCHHHHHHHHHHHhCc---hhcCccCCEEEECCCcCC
Confidence 23467899999999988751 123457899999987644
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.4e-21 Score=188.51 Aligned_cols=232 Identities=15% Similarity=0.061 Sum_probs=156.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
++++++||||+|+||+++++.|+++| ++|+++|+.... .. .....+.+.....++..+.+|++|++++.++++
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~-~~--~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (267)
T 2gdz_A 6 NGKVALVTGAAQGIGRAFAEALLLKG-AKVALVDWNLEA-GV--QCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVV 81 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HH--HHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEEECCHHH-HH--HHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999999 599996543210 00 000011111112357889999999998887775
Q ss_pred ----CCCEEEEcccCCCCCcchhhHHhhhHHHHHHH----HHHHHHCC---CCEEEEeecccccccCCCCCCCCCCCccC
Q 010005 84 ----GASTVFYVDATDLNTDDFYNCYMIIVQGAKNV----VTACRECK---VRRLVYNSTADVVFDGSHDIHNGDETLTC 152 (520)
Q Consensus 84 ----~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~l----l~aa~~~g---vkr~V~~SS~~vyg~~~~~~~~~~E~~~~ 152 (520)
++|+|||+||... ..+++..+++|+.++.++ ++.+++.+ .+++|++||...+..
T Consensus 82 ~~~g~id~lv~~Ag~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------------- 146 (267)
T 2gdz_A 82 DHFGRLDILVNNAGVNN-EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMP-------------- 146 (267)
T ss_dssp HHHSCCCEEEECCCCCC-SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC--------------
T ss_pred HHcCCCCEEEECCCCCC-hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCC--------------
Confidence 4799999999743 467889999999976554 44454443 579999999987631
Q ss_pred CCCCCChHHHHHHHHHHHHHHh-----cCCCCceEEEEecCccccCCCCCch-HHHHHHhcCCCceEEecCCCccccccc
Q 010005 153 CWKFQDLMCDLKAQAEALVLFA-----NNIDGLLTCALRPSNVFGPGDTQLV-PLLVNLAKPGWTKFIIGSGENMSDFTY 226 (520)
Q Consensus 153 ~~~p~~~Y~~sK~~~E~~~~~~-----~~~~gi~~~ilRp~~vyGp~~~~~~-~~l~~~~~~g~~~~i~g~g~~~~~~i~ 226 (520)
..+...|+.||+..|.+.+.+ ....|+++++++|+.+.++...... ........ ..............+++
T Consensus 147 -~~~~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 223 (267)
T 2gdz_A 147 -VAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYI--EYKDHIKDMIKYYGILD 223 (267)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGG--GGHHHHHHHHHHHCCBC
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhhccccccccchhh--hHHHHHHHHhccccCCC
Confidence 123468999999999988763 1247999999999999876311110 00000000 00000000011235789
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHH
Q 010005 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWD 265 (520)
Q Consensus 227 v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~e 265 (520)
++|+|++++.++. .+...|+++++++++.+++.|
T Consensus 224 ~~dvA~~v~~l~s-----~~~~~G~~~~v~gg~~~~~~~ 257 (267)
T 2gdz_A 224 PPLIANGLITLIE-----DDALNGAIMKITTSKGIHFQD 257 (267)
T ss_dssp HHHHHHHHHHHHH-----CTTCSSCEEEEETTTEEEECC
T ss_pred HHHHHHHHHHHhc-----CcCCCCcEEEecCCCcccccC
Confidence 9999999999987 345789999999988776655
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-20 Score=186.33 Aligned_cols=222 Identities=12% Similarity=0.062 Sum_probs=161.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC--CCCCCcEEEEecCCCHHHHHHHHc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~--~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
.++|+||||||+|+||++++++|+++| ++|++.|+.... ......+. ....++..+.+|++|.+++.++++
T Consensus 45 l~gk~vlVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~------~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 117 (291)
T 3ijr_A 45 LKGKNVLITGGDSGIGRAVSIAFAKEG-ANIAIAYLDEEG------DANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQ 117 (291)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCHH------HHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCchH------HHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 356899999999999999999999999 599986553210 00000000 113468899999999998887775
Q ss_pred -------CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHHHHCC--CCEEEEeecccccccCCCCCCCC
Q 010005 84 -------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 -------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa~~~g--vkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|++||+||... ...+++..+++|+.|+.++++++...- ..++|++||...+.
T Consensus 118 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~--------- 188 (291)
T 3ijr_A 118 ETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYE--------- 188 (291)
T ss_dssp HHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHH---------
T ss_pred HHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcC---------
Confidence 6899999998721 334668899999999999999998762 35999999998873
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCC-chHHHHHHhcCCCceEEecCCCccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-LVPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~-~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
+..+...|+.||+..|.+.+.++.+ +|+++.+++||.++++.... .-...... ..+.....
T Consensus 189 ------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~---------~~~~~p~~ 253 (291)
T 3ijr_A 189 ------GNETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSSFDEKKVSQ---------FGSNVPMQ 253 (291)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHHHSCHHHHHH---------TTTTSTTS
T ss_pred ------CCCCChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCcccccCCHHHHHH---------HHccCCCC
Confidence 1234568999999999998877654 48999999999999874211 00111111 12333456
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
.+.+++|+|++++.++.. ......|+.+++.++..+
T Consensus 254 r~~~p~dvA~~v~~L~s~---~~~~itG~~i~vdGG~~~ 289 (291)
T 3ijr_A 254 RPGQPYELAPAYVYLASS---DSSYVTGQMIHVNGGVIV 289 (291)
T ss_dssp SCBCGGGTHHHHHHHHSG---GGTTCCSCEEEESSSCCC
T ss_pred CCcCHHHHHHHHHHHhCC---ccCCCcCCEEEECCCccc
Confidence 688899999999988751 124578999999887543
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-20 Score=187.01 Aligned_cols=225 Identities=11% Similarity=0.090 Sum_probs=157.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCC---CCCCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD---SLSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~---~~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++++|+||||+|+||++++++|+++| ++|+++++.... +.. ....+.. .....++.++.+|++|.+++.+++
T Consensus 16 l~~k~vlVTGasggIG~~la~~l~~~G-~~V~~~~r~~~~-~~~--~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 91 (303)
T 1yxm_A 16 LQGQVAIVTGGATGIGKAIVKELLELG-SNVVIASRKLER-LKS--AADELQANLPPTKQARVIPIQCNIRNEEEVNNLV 91 (303)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHH--HHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHH-HHH--HHHHHHhhccccCCccEEEEecCCCCHHHHHHHH
Confidence 456899999999999999999999999 599996543210 000 0000000 002346889999999999888877
Q ss_pred c-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHC----CCCEEEEeecccccccCCCCCC
Q 010005 83 E-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~----gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
+ ++|+|||+||.. ....+++..+++|+.|+.++++++... +.+++|++||...+
T Consensus 92 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~-------- 163 (303)
T 1yxm_A 92 KSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKA-------- 163 (303)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTT--------
T ss_pred HHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeeccc--------
Confidence 6 489999999962 122455778999999999999998652 35689999998732
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCC--CCCc--hHHHHHHhcCCCceEEecC
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPG--DTQL--VPLLVNLAKPGWTKFIIGS 217 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~--~~~~--~~~l~~~~~~g~~~~i~g~ 217 (520)
+..+...|+.+|+..+.+.+.++.+ +|++++++||+.++|+. .... .+.+......
T Consensus 164 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~--------- 226 (303)
T 1yxm_A 164 --------GFPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQ--------- 226 (303)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGG---------
T ss_pred --------CCCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhhccccchHHHHHHHh---------
Confidence 1123468999999999988877654 48999999999999984 2110 0111111111
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t 262 (520)
......+.+++|+|++++.++.. ......|+.+++.++..++
T Consensus 227 ~~p~~~~~~~~dvA~~i~~l~~~---~~~~~~G~~~~v~gG~~~~ 268 (303)
T 1yxm_A 227 KIPAKRIGVPEEVSSVVCFLLSP---AASFITGQSVDVDGGRSLY 268 (303)
T ss_dssp GSTTSSCBCTHHHHHHHHHHHSG---GGTTCCSCEEEESTTGGGC
T ss_pred cCcccCCCCHHHHHHHHHHHhCc---ccccCCCcEEEECCCeecc
Confidence 11223578999999999988851 1234678999999876543
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-20 Score=185.20 Aligned_cols=220 Identities=15% Similarity=0.055 Sum_probs=159.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC--CCCCCcEEEEecCCCHHHHHHHHc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~--~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
.++|++|||||+|+||++++++|+++| ++|+++|+. +......+. ....++..+.+|++|.+++.++.+
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~--------~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 99 (273)
T 3uf0_A 29 LAGRTAVVTGAGSGIGRAIAHGYARAG-AHVLAWGRT--------DGVKEVADEIADGGGSAEAVVADLADLEGAANVAE 99 (273)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESS--------THHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEcCH--------HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 346899999999999999999999999 599986532 110000000 012467889999999988777654
Q ss_pred ------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCC
Q 010005 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|++||+||... ...+++..+++|+.|+.++++++ ++.+..++|++||...+.
T Consensus 100 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~--------- 170 (273)
T 3uf0_A 100 ELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQ--------- 170 (273)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS---------
T ss_pred HHHhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcC---------
Confidence 6899999999821 33456789999999999999987 445667999999998762
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc--hHHHHHHhcCCCceEEecCCCcc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGENM 221 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~--~~~l~~~~~~g~~~~i~g~g~~~ 221 (520)
+..+...|+.||+..|.+.+.++.+ +|+++.+++||.+.++..... .+......... ...
T Consensus 171 ------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~---------~p~ 235 (273)
T 3uf0_A 171 ------GGRNVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAALRADDERAAEITAR---------IPA 235 (273)
T ss_dssp ------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHHH---------STT
T ss_pred ------CCCCChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhcccCHHHHHHHHhc---------CCC
Confidence 2234578999999999998887654 689999999999998753211 11111211111 123
Q ss_pred cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
..+..++|+|++++.++.. ......|+++++.++..+
T Consensus 236 ~r~~~pedva~~v~~L~s~---~a~~itG~~i~vdGG~~~ 272 (273)
T 3uf0_A 236 GRWATPEDMVGPAVFLASD---AASYVHGQVLAVDGGWLA 272 (273)
T ss_dssp SSCBCGGGGHHHHHHHHSG---GGTTCCSCEEEESTTGGG
T ss_pred CCCCCHHHHHHHHHHHhCc---hhcCCcCCEEEECcCccC
Confidence 4577899999999988862 124578999999987643
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-20 Score=179.49 Aligned_cols=212 Identities=17% Similarity=0.132 Sum_probs=153.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc----
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~---- 83 (520)
+|+++||||+|+||++++++|+++| ++|+++|+. +.+ ..+.+ ++..+.+|++| +++.++++
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G-~~V~~~~r~--------~~~--~~~~~---~~~~~~~D~~~-~~~~~~~~~~~~ 66 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARG-YRVAIASRN--------PEE--AAQSL---GAVPLPTDLEK-DDPKGLVKRALE 66 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESS--------CHH--HHHHH---TCEEEECCTTT-SCHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCC--------HHH--HHHhh---CcEEEecCCch-HHHHHHHHHHHH
Confidence 5799999999999999999999999 599995543 221 11111 26789999999 66665543
Q ss_pred ---CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCCCCC
Q 010005 84 ---GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDET 149 (520)
Q Consensus 84 ---~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~~E~ 149 (520)
++|++||+||.. ....+++..+++|+.++.++.+++. +.+.+++|++||...+...
T Consensus 67 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 136 (239)
T 2ekp_A 67 ALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAG---------- 136 (239)
T ss_dssp HHTSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCC----------
Confidence 799999999972 1234567899999999999998884 4567899999999887321
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch--HHHHHHhcCCCceEEecCCCccccc
Q 010005 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENMSDF 224 (520)
Q Consensus 150 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~--~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (520)
+..+...|+.||+..|.+.+.++.+ +|++++++||+.+.++...... +......... .....+
T Consensus 137 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~---------~p~~~~ 204 (239)
T 2ekp_A 137 ---GPVPIPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTLPLRQNPELYEPITAR---------IPMGRW 204 (239)
T ss_dssp ---TTSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHTT---------CTTSSC
T ss_pred ---CCCCCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCchhhccccCHHHHHHHHhc---------CCCCCC
Confidence 1134578999999999988877544 5899999999999887432110 1222222221 122357
Q ss_pred ccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 225 i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..++|+|++++.++.. ......|+.+++.++.
T Consensus 205 ~~~~dvA~~~~~l~s~---~~~~~tG~~~~vdgG~ 236 (239)
T 2ekp_A 205 ARPEEIARVAAVLCGD---EAEYLTGQAVAVDGGF 236 (239)
T ss_dssp BCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTT
T ss_pred cCHHHHHHHHHHHcCc---hhcCCCCCEEEECCCc
Confidence 8899999999987751 1234678999998864
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.1e-20 Score=180.15 Aligned_cols=204 Identities=13% Similarity=0.032 Sum_probs=154.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
-|+|+||||||+|+||++++++|+++| ++|+++|+ +..+. ....+.+|++|.+++.++++
T Consensus 20 ~m~k~vlITGas~gIG~~la~~l~~~G-~~V~~~~r--------~~~~~---------~~~~~~~d~~d~~~v~~~~~~~ 81 (251)
T 3orf_A 20 HMSKNILVLGGSGALGAEVVKFFKSKS-WNTISIDF--------RENPN---------ADHSFTIKDSGEEEIKSVIEKI 81 (251)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEES--------SCCTT---------SSEEEECSCSSHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeC--------Ccccc---------cccceEEEeCCHHHHHHHHHHH
Confidence 356899999999999999999999999 59999544 33211 12467899999998887775
Q ss_pred -----CCCEEEEcccCC--------CCCcchhhHHhhhHHHHHHHHHHHHHCC--CCEEEEeecccccccCCCCCCCCCC
Q 010005 84 -----GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 -----~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~ll~aa~~~g--vkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
++|+|||+||.. ....++...+++|+.|+.++++++...- -.++|++||...+.
T Consensus 82 ~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~----------- 150 (251)
T 3orf_A 82 NSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALN----------- 150 (251)
T ss_dssp HTTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS-----------
T ss_pred HHHcCCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhcc-----------
Confidence 369999999962 1224567789999999999999998753 24899999988762
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcCC-----CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccc
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI-----DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
+..+...|+.+|+..|.+.+.++.+ +|+++.+++||.+.++. ...... ......
T Consensus 151 ----~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~~--------~~~~~~---------~~~~~~ 209 (251)
T 3orf_A 151 ----RTSGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPT--------NRKYMS---------DANFDD 209 (251)
T ss_dssp ----CCTTBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCHH--------HHHHCT---------TSCGGG
T ss_pred ----CCCCCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCcc--------hhhhcc---------cccccc
Confidence 2234578999999999999988776 58999999999987652 122211 223457
Q ss_pred cccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
+++++|+|++++.++... ......|+.+++.+++..
T Consensus 210 ~~~~~dva~~i~~l~~~~--~~~~~tG~~i~v~~g~~~ 245 (251)
T 3orf_A 210 WTPLSEVAEKLFEWSTNS--DSRPTNGSLVKFETKSKV 245 (251)
T ss_dssp SBCHHHHHHHHHHHHHCG--GGCCCTTCEEEEEEETTE
T ss_pred cCCHHHHHHHHHHHhcCc--cccCCcceEEEEecCCcc
Confidence 889999999999998821 124578999999876643
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.83 E-value=4e-20 Score=182.27 Aligned_cols=227 Identities=18% Similarity=0.126 Sum_probs=163.4
Q ss_pred CCCCCCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHH
Q 010005 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQ 77 (520)
Q Consensus 1 m~~~~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~ 77 (520)
|+....++|++|||||+|.||+++++.|+++| ++|+++ .|+... ..+.+.+ ...++..+.+|++|.++
T Consensus 1 M~m~~l~gk~vlVTGas~GIG~aia~~la~~G-~~V~~~--------~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 71 (280)
T 3tox_A 1 MVMSRLEGKIAIVTGASSGIGRAAALLFAREG-AKVVVT--------ARNGNALAELTDEIAGGGGEAAALAGDVGDEAL 71 (280)
T ss_dssp ---CTTTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEC--------CSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHH
T ss_pred CCccCCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEE--------ECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHH
Confidence 44344567899999999999999999999999 599994 444321 0000001 13467889999999998
Q ss_pred HHHHHc-------CCCEEEEcccCC--------CCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeeccccccc
Q 010005 78 IKKVLE-------GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFD 138 (520)
Q Consensus 78 l~~~l~-------~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~ 138 (520)
+.++++ ++|++||+||.. .+..+++..+++|+.|+.++.+++.. .+..++|++||...+..
T Consensus 72 v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~ 151 (280)
T 3tox_A 72 HEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTA 151 (280)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTTB
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCcC
Confidence 887775 689999999962 12345678999999999999998754 45569999999877521
Q ss_pred CCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCC----chHHHHHHhcCCCc
Q 010005 139 GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ----LVPLLVNLAKPGWT 211 (520)
Q Consensus 139 ~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~----~~~~l~~~~~~g~~ 211 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+.+|.... ..+.........
T Consensus 152 --------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~-- 215 (280)
T 3tox_A 152 --------------GFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGL-- 215 (280)
T ss_dssp --------------CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGSTTCCTHHHHHHHTT--
T ss_pred --------------CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhccccCHHHHHHHhcc--
Confidence 2234578999999999998877654 58999999999999886432 112222222222
Q ss_pred eEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC
Q 010005 212 KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (520)
Q Consensus 212 ~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t 262 (520)
.....+.+++|+|++++.++.. ......|+++++.++..++
T Consensus 216 -------~p~~r~~~pedvA~~v~~L~s~---~a~~itG~~i~vdGG~~~~ 256 (280)
T 3tox_A 216 -------HALKRIARPEEIAEAALYLASD---GASFVTGAALLADGGASVT 256 (280)
T ss_dssp -------STTSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGGGC
T ss_pred -------CccCCCcCHHHHHHHHHHHhCc---cccCCcCcEEEECCCcccc
Confidence 2234578899999999988862 1245779999999986544
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-20 Score=182.42 Aligned_cols=218 Identities=14% Similarity=0.074 Sum_probs=150.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
++++||||||+|+||++++++|+++| ++|++.+ .|+... ..+.+.+ ...++.++.+|++|.+++.++++
T Consensus 25 ~~k~vlITGas~gIG~a~a~~l~~~G-~~V~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 96 (272)
T 4e3z_A 25 DTPVVLVTGGSRGIGAAVCRLAARQG-WRVGVNY-------AANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFS 96 (272)
T ss_dssp CSCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEE-------SSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEc-------CCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 35789999999999999999999999 5887742 222210 0000000 12467889999999998887775
Q ss_pred -------CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHHHHC-------CCCEEEEeecccccccCCC
Q 010005 84 -------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC-------KVRRLVYNSTADVVFDGSH 141 (520)
Q Consensus 84 -------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa~~~-------gvkr~V~~SS~~vyg~~~~ 141 (520)
++|+|||+||... ...+++..+++|+.|+.++++++... +..++|++||...+...
T Consensus 97 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-- 174 (272)
T 4e3z_A 97 AVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGS-- 174 (272)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCC--
T ss_pred HHHHhCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCC--
Confidence 6899999999722 33456789999999999999988654 34689999998876311
Q ss_pred CCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCC-chHHHHHHhcCCCceEEecC
Q 010005 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-LVPLLVNLAKPGWTKFIIGS 217 (520)
Q Consensus 142 ~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~-~~~~l~~~~~~g~~~~i~g~ 217 (520)
..+...|+.||+..|.+.+.++.+ .|+++++++||.+.++.... ..+..... ...
T Consensus 175 ------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~---------~~~ 233 (272)
T 4e3z_A 175 ------------ATQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASGGLPDRARE---------MAP 233 (272)
T ss_dssp ------------TTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC---------------------------
T ss_pred ------------CCCcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCcccccCChHHHHH---------Hhh
Confidence 112457999999999988777554 48999999999999875432 11111111 112
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
+.....+.+++|+|++++.++.. ......|+.|+++++
T Consensus 234 ~~~~~~~~~~edvA~~i~~l~s~---~~~~~tG~~i~vdgG 271 (272)
T 4e3z_A 234 SVPMQRAGMPEEVADAILYLLSP---SASYVTGSILNVSGG 271 (272)
T ss_dssp CCTTSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTT
T ss_pred cCCcCCCcCHHHHHHHHHHHhCC---ccccccCCEEeecCC
Confidence 23345577899999999988852 124467999999876
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-20 Score=178.09 Aligned_cols=201 Identities=12% Similarity=0.047 Sum_probs=154.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++|++|||||+|+||++++++|.++| ++|++.| |+.. +|++|++++.++++
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~--------r~~~-----------------~D~~~~~~v~~~~~~~ 57 (223)
T 3uce_A 4 SDKTVYVVLGGTSGIGAELAKQLESEH-TIVHVAS--------RQTG-----------------LDISDEKSVYHYFETI 57 (223)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHCSTT-EEEEEES--------GGGT-----------------CCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEec--------CCcc-----------------cCCCCHHHHHHHHHHh
Confidence 356899999999999999999999999 6999844 3321 89999999888876
Q ss_pred -CCCEEEEcccCC--------CCCcchhhHHhhhHHHHHHHHHHHHHCC--CCEEEEeecccccccCCCCCCCCCCCccC
Q 010005 84 -GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHDIHNGDETLTC 152 (520)
Q Consensus 84 -~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~ll~aa~~~g--vkr~V~~SS~~vyg~~~~~~~~~~E~~~~ 152 (520)
++|++||+||.. ....+++..+++|+.++.++.+++...- -.++|++||...+.
T Consensus 58 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~--------------- 122 (223)
T 3uce_A 58 GAFDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRK--------------- 122 (223)
T ss_dssp CSEEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTS---------------
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhcc---------------
Confidence 689999999963 2234567789999999999999998763 24899999988762
Q ss_pred CCCCCChHHHHHHHHHHHHHHhcCCCC-ceEEEEecCccccCCCCCchHH----HHHHhcCCCceEEecCCCcccccccH
Q 010005 153 CWKFQDLMCDLKAQAEALVLFANNIDG-LLTCALRPSNVFGPGDTQLVPL----LVNLAKPGWTKFIIGSGENMSDFTYV 227 (520)
Q Consensus 153 ~~~p~~~Y~~sK~~~E~~~~~~~~~~g-i~~~ilRp~~vyGp~~~~~~~~----l~~~~~~g~~~~i~g~g~~~~~~i~v 227 (520)
+..+...|+.+|+..|.+.+.++.+.+ +++.+++|+.+.++......+. +....... .+...+.++
T Consensus 123 ~~~~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 193 (223)
T 3uce_A 123 VVANTYVKAAINAAIEATTKVLAKELAPIRVNAISPGLTKTEAYKGMNADDRDAMYQRTQSH---------LPVGKVGEA 193 (223)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEECSBCSGGGTTSCHHHHHHHHHHHHHH---------STTCSCBCH
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcchhhhhcchhhHHHHHHHHhhc---------CCCCCccCH
Confidence 223457899999999999888876543 9999999999998754433222 12222221 223457789
Q ss_pred HHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 228 ~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
+|+|++++.++. .....|+.+++.++..+
T Consensus 194 ~dvA~~~~~l~~-----~~~~tG~~i~vdgG~~~ 222 (223)
T 3uce_A 194 SDIAMAYLFAIQ-----NSYMTGTVIDVDGGALL 222 (223)
T ss_dssp HHHHHHHHHHHH-----CTTCCSCEEEESTTGGG
T ss_pred HHHHHHHHHHcc-----CCCCCCcEEEecCCeec
Confidence 999999999887 35678999999987644
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-20 Score=180.39 Aligned_cols=231 Identities=16% Similarity=0.128 Sum_probs=156.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~-~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
+|+++||||+|+||++++++|+++| ++|+++|+..... .... ...+.. ...++..+.+|++|.+++.++++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~--~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~ 76 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADG-FDIAVADLPQQEE--QAAETIKLIEA--ADQKAVFVGLDVTDKANFDSAIDEAA 76 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEECGGGHH--HHHHHHHHHHT--TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcchH--HHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 5799999999999999999999999 5999965432100 0000 000100 12467889999999998887776
Q ss_pred ----CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHC----CC-CEEEEeecccccccCCCCCCCCC
Q 010005 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KV-RRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~----gv-kr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|++||+||... ...++...+++|+.++.++++++... +. +++|++||...+.
T Consensus 77 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 146 (258)
T 3a28_C 77 EKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQ---------- 146 (258)
T ss_dssp HHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTS----------
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhcc----------
Confidence 7999999999721 23456778999999999999988753 66 7999999987752
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcC--CCceEEecCCCccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKP--GWTKFIIGSGENMS 222 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~--g~~~~i~g~g~~~~ 222 (520)
+..+...|+.||+..|.+.+.++.+ +|+++.+++|+.+.++........+...... ..............
T Consensus 147 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 221 (258)
T 3a28_C 147 -----GFPILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGMWEQIDAELSKINGKPIGENFKEYSSSIALG 221 (258)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHHHHHHHHHHHHHHCCCTTHHHHHHHTTCTTS
T ss_pred -----CCCCchhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChhhhhhhhhhccccCCchHHHHHHHHhcCCCC
Confidence 1234568999999999988877543 5899999999999765311101000000000 00000001112233
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
.+.+++|+|++++.++.. ......|+.+++.++..+
T Consensus 222 r~~~p~dvA~~v~~l~s~---~~~~~tG~~i~vdGG~~~ 257 (258)
T 3a28_C 222 RPSVPEDVAGLVSFLASE---NSNYVTGQVMLVDGGMLY 257 (258)
T ss_dssp SCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESSSSCC
T ss_pred CccCHHHHHHHHHHHhCc---ccCCCCCCEEEECCCEec
Confidence 578899999999988751 123467899999887543
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.2e-20 Score=181.18 Aligned_cols=220 Identities=9% Similarity=-0.006 Sum_probs=156.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
+++|+||||||+|+||++++++|+++| ++|+++|+. .... ...+.. ...++.++.+|++|.+++.+++
T Consensus 32 l~~k~vlITGasggIG~~la~~L~~~G-~~V~~~~r~--------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 102 (279)
T 3ctm_A 32 LKGKVASVTGSSGGIGWAVAEAYAQAG-ADVAIWYNS--------HPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETI 102 (279)
T ss_dssp CTTCEEEETTTTSSHHHHHHHHHHHHT-CEEEEEESS--------SCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCC--------HHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHH
Confidence 456899999999999999999999999 599995543 2210 000000 0236788999999999888877
Q ss_pred cC-------CCEEEEcccCCCC------C---cchhhHHhhhHHH----HHHHHHHHHHCCCCEEEEeecccccccCCCC
Q 010005 83 EG-------ASTVFYVDATDLN------T---DDFYNCYMIIVQG----AKNVVTACRECKVRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 83 ~~-------~D~Vih~aa~~~~------~---~~~~~~~~~Nv~g----t~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~ 142 (520)
+. +|+|||+||.... . .++...+++|+.+ ++++++++++.+.+++|++||...+...
T Consensus 103 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~--- 179 (279)
T 3ctm_A 103 SQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIVN--- 179 (279)
T ss_dssp HHHHHHHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSCC----
T ss_pred HHHHHHhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECchHhccCC---
Confidence 64 8999999997321 1 2345688999999 5677888888788899999998765210
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGE 219 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~ 219 (520)
+..+...|+.+|+..|.+++.++.+ ++ ++++++|+.+.++......+......... .
T Consensus 180 ----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~---------~ 239 (279)
T 3ctm_A 180 ----------IPQLQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITDFASKDMKAKWWQL---------T 239 (279)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTTSSCCHHHHHHHHHH---------S
T ss_pred ----------CCCCcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCccccccccChHHHHHHHHh---------C
Confidence 1234568999999999998877543 57 99999999998875432222222221111 1
Q ss_pred cccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
....+++++|+|++++.++.. ......|+.++++++..
T Consensus 240 p~~~~~~~~dvA~~~~~l~s~---~~~~~tG~~i~vdgG~~ 277 (279)
T 3ctm_A 240 PLGREGLTQELVGGYLYLASN---ASTFTTGSDVVIDGGYT 277 (279)
T ss_dssp TTCSCBCGGGTHHHHHHHHSG---GGTTCCSCEEEESTTCC
T ss_pred CccCCcCHHHHHHHHHHHhCc---cccCccCCEEEECCCee
Confidence 123578999999999988862 12346789999998753
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-19 Score=176.74 Aligned_cols=233 Identities=14% Similarity=0.034 Sum_probs=160.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccc-----cCCCCCC-CCCCCC--CCCCCcEEEEecCCCHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQ-----LDPSESN-SLLPDS--LSSGRAEYHQVDVRDISQ 77 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~-----l~r~~~~-~~l~~~--~~~~~v~~~~~Dl~d~~~ 77 (520)
.++|++|||||+|.||++++++|+++| ++|+++|+..... ..|+... ....+. ....++..+.+|++|.++
T Consensus 13 l~gk~~lVTGas~gIG~a~a~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 91 (280)
T 3pgx_A 13 LQGRVAFITGAARGQGRSHAVRLAAEG-ADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAA 91 (280)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence 456899999999999999999999999 5999977632100 0011110 000000 013467889999999998
Q ss_pred HHHHHc-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CC-CCEEEEeeccccccc
Q 010005 78 IKKVLE-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFD 138 (520)
Q Consensus 78 l~~~l~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~g-vkr~V~~SS~~vyg~ 138 (520)
+.++++ ++|++||+||.. ....+++..+++|+.++.++++++.. .+ ..++|++||...+.
T Consensus 92 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~- 170 (280)
T 3pgx_A 92 LRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLK- 170 (280)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS-
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhcc-
Confidence 888775 689999999982 23355677899999999999999843 33 46899999988762
Q ss_pred CCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCC-chHHHHHH-hcCCCceE
Q 010005 139 GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-LVPLLVNL-AKPGWTKF 213 (520)
Q Consensus 139 ~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~-~~~~l~~~-~~~g~~~~ 213 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.+++|+.+++|.... ........ ........
T Consensus 171 --------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~ 236 (280)
T 3pgx_A 171 --------------ATPGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEPEAMMEIFARHPSFVHSFP 236 (280)
T ss_dssp --------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCHHHHHHHHHHCGGGGGGSC
T ss_pred --------------CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccchhhhhhhhhcCchhhhhhh
Confidence 2234568999999999998877654 78999999999999986542 11111111 11011101
Q ss_pred EecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 214 i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
....... .+.+++|+|++++.++.. ......|+.+++.++.
T Consensus 237 -~~~~~~~-r~~~p~dvA~~v~~L~s~---~~~~itG~~i~vdGG~ 277 (280)
T 3pgx_A 237 -PMPVQPN-GFMTADEVADVVAWLAGD---GSGTLTGTQIPVDKGA 277 (280)
T ss_dssp -CBTTBCS-SCBCHHHHHHHHHHHHSG---GGTTCSSCEEEESTTG
T ss_pred -hcccCCC-CCCCHHHHHHHHHHHhCc---cccCCCCCEEEECCCc
Confidence 1112223 489999999999988751 1234679999998864
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-20 Score=183.26 Aligned_cols=223 Identities=13% Similarity=0.088 Sum_probs=159.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++|++|||||+|.||+++++.|+++| ++|++.|+.... .. .....+.. ...++..+.+|++|.+++.++++
T Consensus 26 l~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~-~~--~~~~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~~~ 99 (270)
T 3ftp_A 26 LDKQVAIVTGASRGIGRAIALELARRG-AMVIGTATTEAG-AE--GIGAAFKQ--AGLEGRGAVLNVNDATAVDALVEST 99 (270)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSHHH-HH--HHHHHHHH--HTCCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHH-HH--HHHHHHHh--cCCcEEEEEEeCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 599995543210 00 00000000 12357889999999998887776
Q ss_pred -----CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|++||+||.. ....+++..+++|+.|+.++++++.. .+-.++|++||...+.
T Consensus 100 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------- 169 (270)
T 3ftp_A 100 LKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSA---------- 169 (270)
T ss_dssp HHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH----------
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCC----------
Confidence 689999999972 23356678999999999999998853 3456899999988762
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.+++|+.+.++......+........ ......+
T Consensus 170 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~---------~~p~~r~ 235 (270)
T 3ftp_A 170 -----GNPGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTKGLPQEQQTALKT---------QIPLGRL 235 (270)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHHSCHHHHHHHHT---------TCTTCSC
T ss_pred -----CCCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchhhcCHHHHHHHHh---------cCCCCCC
Confidence 2234568999999998888776544 6899999999999876322121222222222 2234567
Q ss_pred ccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 225 i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
.+++|+|++++.++.. ......|+++++.++..+
T Consensus 236 ~~pedvA~~v~~L~s~---~~~~itG~~i~vdGG~~~ 269 (270)
T 3ftp_A 236 GSPEDIAHAVAFLASP---QAGYITGTTLHVNGGMFM 269 (270)
T ss_dssp BCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTSSC
T ss_pred CCHHHHHHHHHHHhCC---CcCCccCcEEEECCCccc
Confidence 8899999999988751 124568999999987654
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-20 Score=185.06 Aligned_cols=224 Identities=13% Similarity=0.048 Sum_probs=159.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC--CCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~--~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
++|++|||||+|.||++++++|+++| ++|++.|+.... .....+.+. ....++.++.+|++|.+++.++++
T Consensus 48 ~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 121 (294)
T 3r3s_A 48 KDRKALVTGGDSGIGRAAAIAYAREG-ADVAINYLPAEE-----EDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHK 121 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECCGGGH-----HHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcch-----hHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHH
Confidence 56899999999999999999999999 599885543110 000000000 013467889999999988877764
Q ss_pred ------CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHHHHCCCC--EEEEeecccccccCCCCCCCCC
Q 010005 84 ------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRECKVR--RLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 ------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk--r~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|++||+||... ...+++..+++|+.|+.++++++...-.+ ++|++||...+.
T Consensus 122 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~---------- 191 (294)
T 3r3s_A 122 AREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQ---------- 191 (294)
T ss_dssp HHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTS----------
T ss_pred HHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhcc----------
Confidence 6899999999721 23456789999999999999999876443 999999998873
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (520)
+..+...|+.||+..|.+.+.++.+ +|+++.+++||.++++.... ...................+
T Consensus 192 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~-------~~~~~~~~~~~~~~~p~~r~ 259 (294)
T 3r3s_A 192 -----PSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQIS-------GGQTQDKIPQFGQQTPMKRA 259 (294)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHT-------TTSCGGGSTTTTTTSTTSSC
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccc-------cCCCHHHHHHHHhcCCCCCC
Confidence 2234568999999999998877654 48999999999999863100 00000000111223344567
Q ss_pred ccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 225 i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
..++|+|++++.++.. ......|+++++.++..+
T Consensus 260 ~~p~dvA~~v~~L~s~---~~~~itG~~i~vdGG~~l 293 (294)
T 3r3s_A 260 GQPAELAPVYVYLASQ---ESSYVTAEVHGVCGGEHL 293 (294)
T ss_dssp BCGGGGHHHHHHHHSG---GGTTCCSCEEEESTTCCC
T ss_pred cCHHHHHHHHHHHhCc---cccCCCCCEEEECCCccC
Confidence 8899999999988751 124577999999988654
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.9e-20 Score=178.58 Aligned_cols=220 Identities=12% Similarity=0.046 Sum_probs=157.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHh-cCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLE-LGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~-~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
++|++|||||+|+||++++++|++ .| +.|++.|+.. .. ....+..+.+|++|.+++.++++
T Consensus 3 ~~k~vlITGas~gIG~~~a~~l~~~~g-~~v~~~~~~~--------~~-------~~~~~~~~~~Dv~~~~~v~~~~~~~ 66 (244)
T 4e4y_A 3 AMANYLVTGGSKGIGKAVVELLLQNKN-HTVINIDIQQ--------SF-------SAENLKFIKADLTKQQDITNVLDII 66 (244)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTSTT-EEEEEEESSC--------CC-------CCTTEEEEECCTTCHHHHHHHHHHT
T ss_pred CCCeEEEeCCCChHHHHHHHHHHhcCC-cEEEEecccc--------cc-------ccccceEEecCcCCHHHHHHHHHHH
Confidence 467899999999999999999999 67 6888855432 10 12356899999999999998886
Q ss_pred ---CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHCCC--CEEEEeecccccccCCCCCCCCCCCcc
Q 010005 84 ---GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRECKV--RRLVYNSTADVVFDGSHDIHNGDETLT 151 (520)
Q Consensus 84 ---~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~gv--kr~V~~SS~~vyg~~~~~~~~~~E~~~ 151 (520)
++|++||+||.. ....+++..+++|+.|+.++++++...-. .++|++||...+.
T Consensus 67 ~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~-------------- 132 (244)
T 4e4y_A 67 KNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFI-------------- 132 (244)
T ss_dssp TTCCEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTC--------------
T ss_pred HhCCCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHcc--------------
Confidence 689999999972 23345677899999999999999977632 3899999998762
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCC--CceEEecCCCccccccc
Q 010005 152 CCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPG--WTKFIIGSGENMSDFTY 226 (520)
Q Consensus 152 ~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g--~~~~i~g~g~~~~~~i~ 226 (520)
+..+...|+.||+..|.+.+.++. .+|+++.+++||.+.++................ ..............+.+
T Consensus 133 -~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~ 211 (244)
T 4e4y_A 133 -AKPNSFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKEFPLNRIAQ 211 (244)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHTTSTTSSCBC
T ss_pred -CCCCCchhHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchhhHHHHHhhhhhcCCCHHHHHHHHhhcCCCCCCcC
Confidence 223356899999999999887764 468999999999998764322111111000000 00000112233456788
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 227 v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
++|+|++++.++.. ......|+.+++.++..
T Consensus 212 p~dvA~~v~~l~s~---~~~~itG~~i~vdGG~~ 242 (244)
T 4e4y_A 212 PQEIAELVIFLLSD---KSKFMTGGLIPIDGGYT 242 (244)
T ss_dssp HHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHHHhcC---ccccccCCeEeECCCcc
Confidence 99999999988862 12446799999988753
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-20 Score=180.86 Aligned_cols=217 Identities=16% Similarity=0.082 Sum_probs=157.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++|++|||||+|.||++++++|.++| ++|+++|+.. . ...+. ...++.++.+|++|.+++.++++
T Consensus 7 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~--------~--~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~ 74 (257)
T 3tl3_A 7 IRDAVAVVTGGASGLGLATTKRLLDAG-AQVVVLDIRG--------E--DVVAD-LGDRARFAAADVTDEAAVASALDLA 74 (257)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHHT-CEEEEEESSC--------H--HHHHH-TCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred ecCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCch--------H--HHHHh-cCCceEEEECCCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 5999855421 1 01111 13468899999999998888876
Q ss_pred ----CCCEEEEcccCC-----------CCCcchhhHHhhhHHHHHHHHHHHHHC------------CCCEEEEeeccccc
Q 010005 84 ----GASTVFYVDATD-----------LNTDDFYNCYMIIVQGAKNVVTACREC------------KVRRLVYNSTADVV 136 (520)
Q Consensus 84 ----~~D~Vih~aa~~-----------~~~~~~~~~~~~Nv~gt~~ll~aa~~~------------gvkr~V~~SS~~vy 136 (520)
++|++||+||.. ....+++..+++|+.++.++.+++... +-.++|++||...+
T Consensus 75 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 154 (257)
T 3tl3_A 75 ETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAF 154 (257)
T ss_dssp HHHSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--
T ss_pred HHhCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhc
Confidence 789999999962 344567889999999999999998753 23489999998876
Q ss_pred ccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceE
Q 010005 137 FDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKF 213 (520)
Q Consensus 137 g~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~ 213 (520)
. +..+...|+.||+..+.+.+.++.+ +|+++.+++||.+..+......+..........+.
T Consensus 155 ~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~- 218 (257)
T 3tl3_A 155 D---------------GQIGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLASLPEEARASLGKQVPH- 218 (257)
T ss_dssp C---------------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC---CHHHHHHHHHTSSS-
T ss_pred C---------------CCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhhhccHHHHHHHHhcCCC-
Confidence 2 1123468999999999887776543 68999999999999876544333333332222110
Q ss_pred EecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC
Q 010005 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (520)
Q Consensus 214 i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t 262 (520)
...+.+++|+|++++.++. .+...|+++++.++..++
T Consensus 219 -------~~r~~~p~dva~~v~~l~s-----~~~itG~~i~vdGG~~~~ 255 (257)
T 3tl3_A 219 -------PSRLGNPDEYGALAVHIIE-----NPMLNGEVIRLDGAIRMA 255 (257)
T ss_dssp -------SCSCBCHHHHHHHHHHHHH-----CTTCCSCEEEESTTC---
T ss_pred -------CCCccCHHHHHHHHHHHhc-----CCCCCCCEEEECCCccCC
Confidence 1357789999999999987 467889999999876544
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-20 Score=182.12 Aligned_cols=213 Identities=13% Similarity=0.054 Sum_probs=153.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCH-HHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI-SQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~-~~l~~~l~- 83 (520)
+++|+++||||+|+||++++++|+++|+..|+++|+.... .....+.+.....++.++.+|++|. +++.++++
T Consensus 3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~-----~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (254)
T 1sby_A 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP-----TALAELKAINPKVNITFHTYDVTVPVAESKKLLKK 77 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH-----HHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchH-----HHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHH
Confidence 4568999999999999999999999994238885543210 0000111111123578899999998 77777665
Q ss_pred ------CCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCC-------CCEEEEeecccccccCCCCCCCCCCCc
Q 010005 84 ------GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK-------VRRLVYNSTADVVFDGSHDIHNGDETL 150 (520)
Q Consensus 84 ------~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-------vkr~V~~SS~~vyg~~~~~~~~~~E~~ 150 (520)
++|+|||+||.. ...+++..+++|+.++.++++++...- ..++|++||...+.
T Consensus 78 ~~~~~g~id~lv~~Ag~~-~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------- 143 (254)
T 1sby_A 78 IFDQLKTVDILINGAGIL-DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN------------- 143 (254)
T ss_dssp HHHHHSCCCEEEECCCCC-CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS-------------
T ss_pred HHHhcCCCCEEEECCccC-CHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhcc-------------
Confidence 799999999974 346788999999999999999987531 35799999998762
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc---h---HHHHHHhcCCCceEEecCCCcc
Q 010005 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL---V---PLLVNLAKPGWTKFIIGSGENM 221 (520)
Q Consensus 151 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~---~---~~l~~~~~~g~~~~i~g~g~~~ 221 (520)
+..+...|+.||+..|.+.+.++.+ +|+++++++|+.+.++..... . +.+ ..... .
T Consensus 144 --~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~-~~~~~------------~ 208 (254)
T 1sby_A 144 --AIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRV-AELLL------------S 208 (254)
T ss_dssp --CCTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTH-HHHHT------------T
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCccccccchhhhhhHHH-HHHHh------------c
Confidence 1233568999999999999887654 689999999999987632110 0 000 00000 1
Q ss_pred cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
.++.+++|+|++++.+++ ....|+.|++.++
T Consensus 209 ~~~~~~~dvA~~i~~~~~------~~~~G~~~~v~gG 239 (254)
T 1sby_A 209 HPTQTSEQCGQNFVKAIE------ANKNGAIWKLDLG 239 (254)
T ss_dssp SCCEEHHHHHHHHHHHHH------HCCTTCEEEEETT
T ss_pred CCCCCHHHHHHHHHHHHH------cCCCCCEEEEeCC
Confidence 234489999999998887 3567899999987
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-20 Score=183.65 Aligned_cols=227 Identities=16% Similarity=0.123 Sum_probs=163.7
Q ss_pred CCCCCCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHH
Q 010005 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIK 79 (520)
Q Consensus 1 m~~~~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~ 79 (520)
|.....++|++|||||+|.||++++++|.++| ++|++.|+. +.. ..+.+.+ ..++..+.+|++|.+++.
T Consensus 1 M~m~~l~gk~~lVTGas~gIG~a~a~~l~~~G-~~V~~~~r~--------~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~ 70 (255)
T 4eso_A 1 MVMGNYQGKKAIVIGGTHGMGLATVRRLVEGG-AEVLLTGRN--------ESNIARIREEF-GPRVHALRSDIADLNEIA 70 (255)
T ss_dssp ---CTTTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESC--------HHHHHHHHHHH-GGGEEEEECCTTCHHHHH
T ss_pred CCCcCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCC--------HHHHHHHHHHh-CCcceEEEccCCCHHHHH
Confidence 43344567899999999999999999999999 599995543 221 0000011 246789999999998887
Q ss_pred HHHc-------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHCC--CCEEEEeecccccccCCCCC
Q 010005 80 KVLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 80 ~~l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~g--vkr~V~~SS~~vyg~~~~~~ 143 (520)
++++ ++|++||+||... ...+++..+++|+.++.++.+++...- -.++|++||...+.
T Consensus 71 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~------ 144 (255)
T 4eso_A 71 VLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEG------ 144 (255)
T ss_dssp HHHHHHHHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSS------
T ss_pred HHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcC------
Confidence 6664 6899999999721 345677889999999999999997651 24899999998763
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCC--ch----HHHHHHhcCCCceEE
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ--LV----PLLVNLAKPGWTKFI 214 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~--~~----~~l~~~~~~g~~~~i 214 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+.+|.... .. ..+.......
T Consensus 145 ---------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~----- 210 (255)
T 4eso_A 145 ---------GHPGMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNI----- 210 (255)
T ss_dssp ---------BCTTBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTTSCHHHHHHHHHHHHHH-----
T ss_pred ---------CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCcccccccCChhhHHHHHHHHhcc-----
Confidence 2234578999999999998877654 48999999999999885431 11 1111111111
Q ss_pred ecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHH
Q 010005 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWD 265 (520)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~e 265 (520)
.+...+.+++|+|++++.++.. .....|+.+++.++...++.+
T Consensus 211 ----~p~~r~~~pedvA~~v~~L~s~----~~~itG~~i~vdGG~~~~l~~ 253 (255)
T 4eso_A 211 ----TPMKRNGTADEVARAVLFLAFE----ATFTTGAKLAVDGGLGQKLST 253 (255)
T ss_dssp ----STTSSCBCHHHHHHHHHHHHHT----CTTCCSCEEEESTTTTTTBCC
T ss_pred ----CCCCCCcCHHHHHHHHHHHcCc----CcCccCCEEEECCCccccCcC
Confidence 1234567899999999988761 245779999999987665543
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-20 Score=182.11 Aligned_cols=221 Identities=16% Similarity=0.143 Sum_probs=160.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++|++|||||+|.||++++++|.++| ++|++.|+.... +. .....+.. ...++.++.+|++|.+++.++++
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~-~~--~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~ 82 (264)
T 3ucx_A 9 LTDKVVVISGVGPALGTTLARRCAEQG-ADLVLAARTVER-LE--DVAKQVTD--TGRRALSVGTDITDDAQVAHLVDET 82 (264)
T ss_dssp TTTCEEEEESCCTTHHHHHHHHHHHTT-CEEEEEESCHHH-HH--HHHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCHHH-HH--HHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 599995543210 00 00000000 13468899999999998887775
Q ss_pred -----CCCEEEEcccCC--------CCCcchhhHHhhhHHHHHHHHHHHHHC----CCCEEEEeecccccccCCCCCCCC
Q 010005 84 -----GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 -----~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~ll~aa~~~----gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|++||+||.. ....++...+++|+.++.++++++... + .++|++||...+.
T Consensus 83 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~--------- 152 (264)
T 3ucx_A 83 MKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK-GAVVNVNSMVVRH--------- 152 (264)
T ss_dssp HHHTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT-CEEEEECCGGGGC---------
T ss_pred HHHcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEECcchhcc---------
Confidence 689999999762 122456778999999999999987532 3 5999999988762
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch-----------HHHHHHhcCCCce
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-----------PLLVNLAKPGWTK 212 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~-----------~~l~~~~~~g~~~ 212 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.+++|+.+++|...... +.+.....
T Consensus 153 ------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~----- 221 (264)
T 3ucx_A 153 ------SQAKYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAA----- 221 (264)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHHHHHHHHHHHTTCCHHHHHHHHH-----
T ss_pred ------CCCccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccccHHHHHHhhhhhcCCCHHHHHHHHh-----
Confidence 2234568999999999998877654 7999999999999987432211 11222222
Q ss_pred EEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 213 FIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 213 ~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
++.....+.+++|+|++++.++.. ......|+++++.++..
T Consensus 222 ----~~~p~~r~~~p~dvA~~v~~L~s~---~~~~itG~~i~vdGG~~ 262 (264)
T 3ucx_A 222 ----AGSDLKRLPTEDEVASAILFMASD---LASGITGQALDVNCGEY 262 (264)
T ss_dssp ----TTSSSSSCCBHHHHHHHHHHHHSG---GGTTCCSCEEEESTTSS
T ss_pred ----ccCCcccCCCHHHHHHHHHHHcCc---cccCCCCCEEEECCCcc
Confidence 233445688999999999988751 12457899999998764
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=5.5e-20 Score=178.13 Aligned_cols=213 Identities=14% Similarity=0.102 Sum_probs=149.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCC-CHHHHHHHHcC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVR-DISQIKKVLEG 84 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~-d~~~l~~~l~~ 84 (520)
.++|+||||||+|+||+++++.|+++| ++|+++|+ ++. ...+ + ..+..+ +|+. +.+.+.+.+.+
T Consensus 17 ~~~k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r--------~~~--~~~~-~--~~~~~~-~D~~~~~~~~~~~~~~ 81 (249)
T 1o5i_A 17 IRDKGVLVLAASRGIGRAVADVLSQEG-AEVTICAR--------NEE--LLKR-S--GHRYVV-CDLRKDLDLLFEKVKE 81 (249)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEES--------CHH--HHHH-T--CSEEEE-CCTTTCHHHHHHHSCC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcC--------CHH--HHHh-h--CCeEEE-eeHHHHHHHHHHHhcC
Confidence 457899999999999999999999999 59999554 321 1111 1 245666 9993 23334444448
Q ss_pred CCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHH----HHHHCCCCEEEEeecccccccCCCCCCCCCCCccCC
Q 010005 85 ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVT----ACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCC 153 (520)
Q Consensus 85 ~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~----aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~ 153 (520)
+|+|||+||... ...++...+++|+.++.++.+ .+++.+.+++|++||...|. +
T Consensus 82 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------~ 146 (249)
T 1o5i_A 82 VDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVIS---------------P 146 (249)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS---------------C
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcC---------------C
Confidence 999999999721 234567789999999776654 45566778999999998873 1
Q ss_pred CCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHH-HhcCCCceEEecCCCcccccccHHH
Q 010005 154 WKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVN-LAKPGWTKFIIGSGENMSDFTYVEN 229 (520)
Q Consensus 154 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~-~~~~g~~~~i~g~g~~~~~~i~v~D 229 (520)
..+...|+.+|+..|.+.+.++.+ +|++++++||+.++++......+.... ..... .....+.+++|
T Consensus 147 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~---------~p~~~~~~~~d 217 (249)
T 1o5i_A 147 IENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLSEEKKKQVESQ---------IPMRRMAKPEE 217 (249)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHSCHHHHHHHHTT---------STTSSCBCHHH
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCcccccchhhHHHHHHhc---------CCCCCCcCHHH
Confidence 233568999999999988776543 689999999999998853211111111 11111 12345789999
Q ss_pred HHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 230 VAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 230 va~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
+|++++.++.. ......|+.+++.++..
T Consensus 218 vA~~i~~l~s~---~~~~~tG~~~~vdgG~~ 245 (249)
T 1o5i_A 218 IASVVAFLCSE---KASYLTGQTIVVDGGLS 245 (249)
T ss_dssp HHHHHHHHHSG---GGTTCCSCEEEESTTCC
T ss_pred HHHHHHHHcCc---cccCCCCCEEEECCCcc
Confidence 99999988761 12346689999988753
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-20 Score=181.66 Aligned_cols=223 Identities=13% Similarity=0.032 Sum_probs=159.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~-~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
.++++||||||+|+||++++++|+++| ++|++.+.... .+... ...+. ....++..+.+|++|.+++.++++
T Consensus 11 ~~~k~vlITGas~giG~~ia~~l~~~G-~~v~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~Dv~~~~~v~~~~~~ 84 (256)
T 3ezl_A 11 MSQRIAYVTGGMGGIGTSICQRLHKDG-FRVVAGCGPNS---PRRVKWLEDQK--ALGFDFYASEGNVGDWDSTKQAFDK 84 (256)
T ss_dssp --CEEEEETTTTSHHHHHHHHHHHHTT-EEEEEEECTTC---SSHHHHHHHHH--HTTCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCCH---HHHHHHHHHHH--hcCCeeEEEecCCCCHHHHHHHHHH
Confidence 356899999999999999999999999 58888552210 00000 00000 012468899999999998888776
Q ss_pred ------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCC
Q 010005 84 ------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 ------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|++||+||.. ....+++..+++|+.++.++.+++ ++.+..++|++||...+.
T Consensus 85 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--------- 155 (256)
T 3ezl_A 85 VKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQK--------- 155 (256)
T ss_dssp HHHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGG---------
T ss_pred HHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcc---------
Confidence 689999999972 223456789999999988887776 455677999999987762
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.+++|+.+.++......+.....+.... ....
T Consensus 156 ------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~---------~~~~ 220 (256)
T 3ezl_A 156 ------GQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAIRPDVLEKIVATI---------PVRR 220 (256)
T ss_dssp ------SCSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHHHS---------TTSS
T ss_pred ------CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCccccccCHHHHHHHHhcC---------CCCC
Confidence 2235678999999999888776543 689999999999987654333344444333222 2345
Q ss_pred cccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
+.+++|+|++++.++.. ......|+.+++.++..+
T Consensus 221 ~~~~~dva~~~~~l~s~---~~~~~tG~~i~vdgG~~~ 255 (256)
T 3ezl_A 221 LGSPDEIGSIVAWLASE---ESGFSTGADFSLNGGLHM 255 (256)
T ss_dssp CBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTSCC
T ss_pred CcCHHHHHHHHHHHhCC---cccCCcCcEEEECCCEeC
Confidence 67899999999988751 124577999999987643
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=175.67 Aligned_cols=212 Identities=14% Similarity=0.079 Sum_probs=152.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++|+|+||||+|+||++++++|+++| ++|++.+ |++.+ + ..+..+.+|++|++++.++++
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~--------r~~~~--~------~~~~~~~~Dl~d~~~v~~~~~~~ 81 (253)
T 2nm0_A 19 HMSRSVLVTGGNRGIGLAIARAFADAG-DKVAITY--------RSGEP--P------EGFLAVKCDITDTEQVEQAYKEI 81 (253)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE--------SSSCC--C------TTSEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEe--------CChHh--h------ccceEEEecCCCHHHHHHHHHHH
Confidence 346899999999999999999999999 5999844 43321 1 137889999999998887775
Q ss_pred -----CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|++||+||.. ....+++..+++|+.++.++++++.. .+.+++|++||...+.
T Consensus 82 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~---------- 151 (253)
T 2nm0_A 82 EETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLL---------- 151 (253)
T ss_dssp HHHTCSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCC----------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCC----------
Confidence 479999999972 24467788999999999999987754 4677999999987652
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (520)
+..+...|+.+|+..|.+.+.++. ..|+++++++|+.+.++......+........ ......+
T Consensus 152 -----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~---------~~p~~~~ 217 (253)
T 2nm0_A 152 -----GSAGQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKVLTDEQRANIVS---------QVPLGRY 217 (253)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC---------CHHHHHT---------TCTTCSC
T ss_pred -----CCCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcCHHHHHHHHh---------cCCCCCC
Confidence 112246899999999988877643 36899999999999876432211111111111 1122357
Q ss_pred ccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 225 i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
+..+|+|++++.++.. ......|+.+.+.++..+
T Consensus 218 ~~p~dvA~~i~~l~s~---~~~~~tG~~i~vdGG~~~ 251 (253)
T 2nm0_A 218 ARPEEIAATVRFLASD---DASYITGAVIPVDGGLGM 251 (253)
T ss_dssp BCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTTTC
T ss_pred cCHHHHHHHHHHHhCc---cccCCcCcEEEECCcccc
Confidence 8899999999988762 123467899999887543
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-20 Score=179.11 Aligned_cols=218 Identities=13% Similarity=0.081 Sum_probs=153.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
++|+++||||+|+||++++++|+++| ++|+++++. ++.+ ....+.+ ...++..+.+|++|++++.++++
T Consensus 3 ~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~-------~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (246)
T 2uvd_A 3 KGKVALVTGASRGIGRAIAIDLAKQG-ANVVVNYAG-------NEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVK 74 (246)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESS-------CHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCC-------CHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 46899999999999999999999999 599985441 2110 0000000 12467889999999998888776
Q ss_pred -------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCC
Q 010005 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|++||+||... ...+++..+++|+.++.++.+++ ++.+.+++|++||...+..
T Consensus 75 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------- 147 (246)
T 2uvd_A 75 QTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTG------- 147 (246)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC-------
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcCC-------
Confidence 6999999999721 23456789999999977776665 4456789999999876521
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
..+...|+.+|+..+.+.+.++. .+|+++++++|+.+.++......+......... ....
T Consensus 148 --------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~---------~p~~ 210 (246)
T 2uvd_A 148 --------NPGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVLDENIKAEMLKL---------IPAA 210 (246)
T ss_dssp --------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSCCCTTHHHHHHHT---------CTTC
T ss_pred --------CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhhcCHHHHHHHHhc---------CCCC
Confidence 12346899999999988776643 368999999999999875432111111111111 1123
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.+.+++|+|++++.++.. ......|+.+++.++.
T Consensus 211 ~~~~~~dvA~~~~~l~s~---~~~~~tG~~~~vdgG~ 244 (246)
T 2uvd_A 211 QFGEAQDIANAVTFFASD---QSKYITGQTLNVDGGM 244 (246)
T ss_dssp SCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTS
T ss_pred CCcCHHHHHHHHHHHcCc---hhcCCCCCEEEECcCc
Confidence 578999999999988751 1234678999998864
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=7.2e-20 Score=176.88 Aligned_cols=216 Identities=13% Similarity=0.042 Sum_probs=154.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
+++|+++||||+|.||++++++|+++| ++|+++++ +..+ +.+.....++..+.+|++|++++.++++
T Consensus 3 l~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r--------~~~~--~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 71 (245)
T 1uls_A 3 LKDKAVLITGAAHGIGRATLELFAKEG-ARLVACDI--------EEGP--LREAAEAVGAHPVVMDVADPASVERGFAEA 71 (245)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEES--------CHHH--HHHHHHTTTCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeC--------CHHH--HHHHHHHcCCEEEEecCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 59999544 3221 1000001137889999999998887775
Q ss_pred -----CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|+|||+||... ...+++..+++|+.++.++.+++.. .+.+++|++||...++
T Consensus 72 ~~~~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~---------- 141 (245)
T 1uls_A 72 LAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLG---------- 141 (245)
T ss_dssp HHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGC----------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccchhcC----------
Confidence 4899999999721 2345677899999999999888865 3567999999988431
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (520)
..+...|+.+|+..+.+.+.++.+ +|+++++++||.+.++......+.......... ....+
T Consensus 142 ------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~---------p~~~~ 206 (245)
T 1uls_A 142 ------NLGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKVPEKVREKAIAAT---------PLGRA 206 (245)
T ss_dssp ------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSSCHHHHHHHHHTC---------TTCSC
T ss_pred ------CCCchhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchhhcCHHHHHHHHhhC---------CCCCC
Confidence 123468999999998887776533 589999999999988754332222222221111 11236
Q ss_pred ccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 225 i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
.+.+|+|++++.++.. ......|+.+++.++..
T Consensus 207 ~~~~dvA~~v~~l~s~---~~~~~tG~~~~vdgG~~ 239 (245)
T 1uls_A 207 GKPLEVAYAALFLLSD---ESSFITGQVLFVDGGRT 239 (245)
T ss_dssp BCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTTT
T ss_pred cCHHHHHHHHHHHhCc---hhcCCcCCEEEECCCcc
Confidence 7899999999988761 12346789999988753
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-20 Score=181.90 Aligned_cols=220 Identities=15% Similarity=0.085 Sum_probs=153.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
..++|++|||||+|+||++++++|+++| ++|+++| |+..+. .+.+.+ ..++.++.+|++|.+++.++++
T Consensus 3 ~l~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~--------r~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~ 72 (253)
T 1hxh_A 3 RLQGKVALVTGGASGVGLEVVKLLLGEG-AKVAFSD--------INEAAGQQLAAEL-GERSMFVRHDVSSEADWTLVMA 72 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEC--------SCHHHHHHHHHHH-CTTEEEECCCTTCHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEe--------CCHHHHHHHHHHc-CCceEEEEccCCCHHHHHHHHH
Confidence 4567899999999999999999999999 5999954 432210 000111 2467889999999998887765
Q ss_pred -------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCC
Q 010005 84 -------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 -------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|+|||+||.. ....+++..+++|+.++.++.+++ ++.+ +++|++||...+.
T Consensus 73 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~-------- 143 (253)
T 1hxh_A 73 AVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-GSIINMASVSSWL-------- 143 (253)
T ss_dssp HHHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-EEEEEECCGGGTS--------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC-CEEEEEcchhhcC--------
Confidence 479999999972 123456778999999877666654 4566 8999999998762
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---C--CceEEEEecCccccCCCCCch-HHHHHH-hcCCCceEEecCC
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---D--GLLTCALRPSNVFGPGDTQLV-PLLVNL-AKPGWTKFIIGSG 218 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~--gi~~~ilRp~~vyGp~~~~~~-~~l~~~-~~~g~~~~i~g~g 218 (520)
+..+...|+.||+..|.+.+.++.+ + |++++++||+.+++|...... +..... ..... ..
T Consensus 144 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~------~~ 210 (253)
T 1hxh_A 144 -------PIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVSKEMVLHDP------KL 210 (253)
T ss_dssp -------CCTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTTCCHHHHBCBT------TT
T ss_pred -------CCCCCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhccchhhhHHHHhhhh------cc
Confidence 1234568999999999998887654 3 899999999999987421000 000000 11100 01
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.....+.+++|+|++++.++.. ......|+.+++.++.
T Consensus 211 ~p~~~~~~~~dvA~~~~~l~s~---~~~~~tG~~~~vdgG~ 248 (253)
T 1hxh_A 211 NRAGRAYMPERIAQLVLFLASD---ESSVMSGSELHADNSI 248 (253)
T ss_dssp BTTCCEECHHHHHHHHHHHHSG---GGTTCCSCEEEESSSC
T ss_pred CccCCCCCHHHHHHHHHHHcCc---cccCCCCcEEEECCCc
Confidence 1233578899999999988762 1234678999998864
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-19 Score=178.54 Aligned_cols=245 Identities=16% Similarity=0.121 Sum_probs=166.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC----CCCCC-----CCCCCCcEEEEecCCCHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN----SLLPD-----SLSSGRAEYHQVDVRDIS 76 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~----~~l~~-----~~~~~~v~~~~~Dl~d~~ 76 (520)
.++|++|||||+|.||++++++|+++| ++|+++|+... ..+.... ..+.+ .....++..+.+|++|.+
T Consensus 8 l~gk~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 84 (287)
T 3pxx_A 8 VQDKVVLVTGGARGQGRSHAVKLAEEG-ADIILFDICHD--IETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRA 84 (287)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSC--CTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCC-CeEEEEccccc--ccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHH
Confidence 456899999999999999999999999 59999776532 1111000 00000 001346889999999999
Q ss_pred HHHHHHc-------CCCEEEEcccCC-----CCCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCC
Q 010005 77 QIKKVLE-------GASTVFYVDATD-----LNTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 77 ~l~~~l~-------~~D~Vih~aa~~-----~~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~ 142 (520)
++.++++ ++|++||+||.. ....+++..+++|+.|+.++++++... +-.++|++||...+.....
T Consensus 85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~- 163 (287)
T 3pxx_A 85 AVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAAQ- 163 (287)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhcccccc-
Confidence 8887776 789999999982 234567889999999999999999875 2359999999887743221
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCC---Cc-----
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPG---WT----- 211 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g---~~----- 211 (520)
.+..|.. +..+...|+.||+..|.+.+.++.+ +|+++.+++||.+.++....... ....... ..
T Consensus 164 -~~~~~~~--~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~~~~~~~~~ 238 (287)
T 3pxx_A 164 -PPGAGGP--QGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAPM--YRQFRPDLEAPSRADAL 238 (287)
T ss_dssp -CC-------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSSHHH--HHHHCTTSSSCCHHHHH
T ss_pred -ccccccc--CCCccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccccch--hhhhccccccchhHHHH
Confidence 1222222 2234568999999999998877654 48999999999999886543111 1111100 00
Q ss_pred eEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC
Q 010005 212 KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (520)
Q Consensus 212 ~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t 262 (520)
............+.+++|+|++++.++.. ......|+++++.++..++
T Consensus 239 ~~~~~~~~~~~~~~~p~dva~~v~fL~s~---~a~~itG~~i~vdGG~~~~ 286 (287)
T 3pxx_A 239 LAFPAMQAMPTPYVEASDISNAVCFLASD---ESRYVTGLQFKVDAGAMLK 286 (287)
T ss_dssp HHGGGGCSSSCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGGGG
T ss_pred hhhhhhcccCCCCCCHHHHHhhHheecch---hhcCCCCceEeECchhhhc
Confidence 00001111225788999999999988851 1245789999999876543
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.7e-20 Score=179.91 Aligned_cols=220 Identities=12% Similarity=0.075 Sum_probs=154.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC-CCCCcEEEEecCCCHHHHHHHHc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL-SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~-~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
.++|+++||||+|+||+++++.|+++| ++|+++|+ +..+. ...+.+ ...++..+.+|++|.+++.++++
T Consensus 27 l~~k~vlVTGas~gIG~aia~~L~~~G-~~V~~~~r--------~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~ 97 (276)
T 2b4q_A 27 LAGRIALVTGGSRGIGQMIAQGLLEAG-ARVFICAR--------DAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQ 97 (276)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECS--------CHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeC--------CHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHH
Confidence 346899999999999999999999999 59999544 32210 000000 11257888999999998887775
Q ss_pred -------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHH----HCCC----CEEEEeecccccccCCC
Q 010005 84 -------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECKV----RRLVYNSTADVVFDGSH 141 (520)
Q Consensus 84 -------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gv----kr~V~~SS~~vyg~~~~ 141 (520)
++|+|||+||.. ....+++..+++|+.++.++++++. +.+. +++|++||...+..
T Consensus 98 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~--- 174 (276)
T 2b4q_A 98 ALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISA--- 174 (276)
T ss_dssp HHHHHCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCC---
T ss_pred HHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCC---
Confidence 689999999972 2334567899999999988888764 3343 79999999987621
Q ss_pred CCCCCCCCccCCCCCCC-hHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecC
Q 010005 142 DIHNGDETLTCCWKFQD-LMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGS 217 (520)
Q Consensus 142 ~~~~~~E~~~~~~~p~~-~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~ 217 (520)
..+.. .|+.||+..|.+.+.++.+ +|+++++++|+.+.++......+......... .
T Consensus 175 ------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~-------~ 235 (276)
T 2b4q_A 175 ------------MGEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRHIANDPQALEADS-------A 235 (276)
T ss_dssp ------------CCCSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTHHHHHCHHHHHHHH-------H
T ss_pred ------------CCCCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchhhcchhHHHHHHhh-------c
Confidence 11234 8999999999998877643 58999999999998875322111111111110 0
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
......+.+++|+|++++.++.. ......|+.+++.++.
T Consensus 236 ~~p~~r~~~p~dvA~~v~~l~s~---~~~~~tG~~i~vdGG~ 274 (276)
T 2b4q_A 236 SIPMGRWGRPEEMAALAISLAGT---AGAYMTGNVIPIDGGF 274 (276)
T ss_dssp TSTTSSCCCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHhCc---cccCCCCCEEEeCCCc
Confidence 11223578899999999988862 1234678999998864
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-20 Score=180.67 Aligned_cols=219 Identities=11% Similarity=0.069 Sum_probs=158.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCC--CCCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDS--LSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~--~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
+++++|||||+|+||++++++|+++| ++|++.+ .|+... ....+. ....++..+.+|++|.+++.++++
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G-~~vv~~~-------~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 74 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENG-YNIVINY-------ARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQ 74 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEE-------SSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCC-CEEEEEc-------CCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 46899999999999999999999999 5888741 333210 000000 013468899999999998887775
Q ss_pred -------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCC
Q 010005 84 -------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 -------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|++||+||.. ....+++..+++|+.|+.++++++ ++.+..++|++||...+.
T Consensus 75 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~-------- 146 (258)
T 3oid_A 75 QIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIR-------- 146 (258)
T ss_dssp HHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTS--------
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCC--------
Confidence 579999999861 233456778999999999999988 445667999999987762
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc--hHHHHHHhcCCCceEEecCCCc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGEN 220 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~--~~~l~~~~~~g~~~~i~g~g~~ 220 (520)
+..+...|+.||+..|.+.+.++.+ +|+++.+++||.+.++..... .+......... ..
T Consensus 147 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~---------~p 210 (258)
T 3oid_A 147 -------YLENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPNREDLLEDARQN---------TP 210 (258)
T ss_dssp -------BCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGCTTHHHHHHHHHHH---------CT
T ss_pred -------CCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhcccCHHHHHHHHhc---------CC
Confidence 2244678999999999998887654 489999999999988754321 12222222221 12
Q ss_pred ccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
...+.+++|+|++++.++.. ......|+++++.++..
T Consensus 211 ~~r~~~~~dva~~v~~L~s~---~~~~itG~~i~vdGG~~ 247 (258)
T 3oid_A 211 AGRMVEIKDMVDTVEFLVSS---KADMIRGQTIIVDGGRS 247 (258)
T ss_dssp TSSCBCHHHHHHHHHHHTSS---TTTTCCSCEEEESTTGG
T ss_pred CCCCcCHHHHHHHHHHHhCc---ccCCccCCEEEECCCcc
Confidence 34578899999999988751 12457799999998753
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.4e-20 Score=180.71 Aligned_cols=218 Identities=17% Similarity=0.135 Sum_probs=155.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC---CCCCcEEEEecCCCHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL---SSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~---~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
.++|++|||||+|+||+++++.|+++| ++|+++++. ..+. ...+.+ ...++..+.+|++|.+++.++
T Consensus 19 l~~k~~lVTGas~gIG~~ia~~l~~~G-~~V~~~~r~--------~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~ 89 (267)
T 1vl8_A 19 LRGRVALVTGGSRGLGFGIAQGLAEAG-CSVVVASRN--------LEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKL 89 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESC--------HHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCC--------HHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHH
Confidence 456899999999999999999999999 599995543 2100 000000 123578899999999988877
Q ss_pred Hc-------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccc-cccCCCC
Q 010005 82 LE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADV-VFDGSHD 142 (520)
Q Consensus 82 l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~v-yg~~~~~ 142 (520)
++ ++|+|||+||... ...+++..+++|+.|+.++++++. +.+.+++|++||..+ +.
T Consensus 90 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~----- 164 (267)
T 1vl8_A 90 LEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEV----- 164 (267)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCC-----
T ss_pred HHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhcc-----
Confidence 76 6899999999721 223456789999999999988874 456789999999873 20
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch--HHHHHHhcCCCceEEecC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGS 217 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~--~~l~~~~~~g~~~~i~g~ 217 (520)
+..+...|+.+|+..|.+.+.++.+ +|+++++++|+.+.++...... +..........
T Consensus 165 ----------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~------- 227 (267)
T 1vl8_A 165 ----------TMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRI------- 227 (267)
T ss_dssp ----------CSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTC-------
T ss_pred ----------CCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCccccccccccChHHHHHHHhhC-------
Confidence 1234568999999999998877543 5899999999999877532111 11111111111
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
....+.+.+|+|++++.++.. ......|+.+.+.++.
T Consensus 228 --p~~~~~~p~dvA~~v~~l~s~---~~~~itG~~i~vdGG~ 264 (267)
T 1vl8_A 228 --PLGRTGVPEDLKGVAVFLASE---EAKYVTGQIIFVDGGW 264 (267)
T ss_dssp --TTSSCBCGGGGHHHHHHHHSG---GGTTCCSCEEEESTTG
T ss_pred --CCCCCcCHHHHHHHHHHHcCc---cccCCcCCeEEECCCC
Confidence 123477899999999988751 1234678999998864
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.3e-20 Score=185.83 Aligned_cols=170 Identities=15% Similarity=0.121 Sum_probs=127.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
++|++|||||+|+||++++++|+++| ++|++.++.. ..|+... ..+.+.. ...++..+.+|++|.+++.++++
T Consensus 4 ~~k~vlVTGas~GIG~aia~~L~~~G-~~V~~~~r~~---~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~ 79 (324)
T 3u9l_A 4 SKKIILITGASSGFGRLTAEALAGAG-HRVYASMRDI---VGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAID 79 (324)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCT---TTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEecCcc---cccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHH
Confidence 45899999999999999999999999 5999855432 2222210 0000000 12468899999999999888886
Q ss_pred -------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCC
Q 010005 84 -------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 -------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|+|||+||.. ....++...+++|+.|+.++++++ ++.+.+++|++||...++.
T Consensus 80 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~~------- 152 (324)
T 3u9l_A 80 QIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGG------- 152 (324)
T ss_dssp HHHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC-------
T ss_pred HHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecchhccC-------
Confidence 799999999972 233456778999999999999998 6667789999999887621
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCC
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPG 194 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~ 194 (520)
+......|+.||+..|.+.+.++.+ +|+++++++||.+.++.
T Consensus 153 -------~~~~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~ 197 (324)
T 3u9l_A 153 -------TPPYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGT 197 (324)
T ss_dssp -------CCSSCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC----
T ss_pred -------CCCcchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCc
Confidence 1123467999999999998887654 69999999999998654
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.82 E-value=7e-20 Score=179.65 Aligned_cols=219 Identities=12% Similarity=0.015 Sum_probs=157.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++++||||||+|+||++++++|+++| ++|++.++.. ... ..+.+.+ ...++.++.+|++|.+++.+++
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G-~~V~~~~r~~-------~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 98 (271)
T 4iin_A 27 FTGKNVLITGASKGIGAEIAKTLASMG-LKVWINYRSN-------AEVADALKNELEEKGYKAAVIKFDAASESDFIEAI 98 (271)
T ss_dssp CSCCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSC-------HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCC-------HHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHH
Confidence 356899999999999999999999999 5999855421 110 0000000 1246889999999999888777
Q ss_pred c-------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCC
Q 010005 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
+ ++|+|||+||... ...+++..+++|+.++.++.+++.. .+..++|++||...+.
T Consensus 99 ~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------- 171 (271)
T 4iin_A 99 QTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGER------- 171 (271)
T ss_dssp HHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH-------
T ss_pred HHHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcC-------
Confidence 5 6899999999821 2346678999999999998888744 4667999999987752
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcc
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (520)
+..+...|+.+|+..|.+.+.++.+ .|+++.+++||.+..+......+.... ........
T Consensus 172 --------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~---------~~~~~~~~ 234 (271)
T 4iin_A 172 --------GNMGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNANLKDELKA---------DYVKNIPL 234 (271)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC---------------------CGGGCTT
T ss_pred --------CCCCchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchhhhcHHHHH---------HHHhcCCc
Confidence 2235678999999999998877654 689999999999987754332221111 11222344
Q ss_pred cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..+.+++|+|+++..++.. ......|+.+++.++.
T Consensus 235 ~~~~~p~dvA~~i~~l~s~---~~~~itG~~i~vdGG~ 269 (271)
T 4iin_A 235 NRLGSAKEVAEAVAFLLSD---HSSYITGETLKVNGGL 269 (271)
T ss_dssp CSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTS
T ss_pred CCCcCHHHHHHHHHHHhCC---CcCCCcCCEEEeCCCe
Confidence 5688999999999988862 1235689999998864
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=176.65 Aligned_cols=228 Identities=12% Similarity=0.014 Sum_probs=154.0
Q ss_pred CCCCCCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCC--CCCCCcEEEEecCCCHHH
Q 010005 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDS--LSSGRAEYHQVDVRDISQ 77 (520)
Q Consensus 1 m~~~~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~--~~~~~v~~~~~Dl~d~~~ 77 (520)
|.....++|++|||||+|.||++++++|.++| ++|++.+. |+... ....+. ....++..+.+|++|.++
T Consensus 1 M~~~~l~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 72 (259)
T 3edm_A 1 MSLQRFTNRTIVVAGAGRDIGRACAIRFAQEG-ANVVLTYN-------GAAEGAATAVAEIEKLGRSALAIKADLTNAAE 72 (259)
T ss_dssp ---CTTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEEC-------SSCHHHHHHHHHHHTTTSCCEEEECCTTCHHH
T ss_pred CCccCCCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcC-------CCHHHHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence 44445667999999999999999999999999 58888522 22110 000000 013467899999999998
Q ss_pred HHHHHc-------CCCEEEEcccCC--------CCCcchhhHHhhhHHHHHHHHHHHHHCCC--CEEEEeecccccccCC
Q 010005 78 IKKVLE-------GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTACRECKV--RRLVYNSTADVVFDGS 140 (520)
Q Consensus 78 l~~~l~-------~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~ll~aa~~~gv--kr~V~~SS~~vyg~~~ 140 (520)
+.++++ ++|++||+||.. ....+++..+++|+.|+.++.+++...-. .++|++||...+..
T Consensus 73 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~-- 150 (259)
T 3edm_A 73 VEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDG-- 150 (259)
T ss_dssp HHHHHHHHHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHC--
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccC--
Confidence 888776 689999999862 12234577899999999999999987643 38999999887611
Q ss_pred CCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCCC--CceEEEEecCccccCCCCCch-HHHHHHhcCCCceEEecC
Q 010005 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQLV-PLLVNLAKPGWTKFIIGS 217 (520)
Q Consensus 141 ~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~vyGp~~~~~~-~~l~~~~~~g~~~~i~g~ 217 (520)
+..+...|+.||+..+.+.+.++.+. ++++.++.||.+..+...... +... ....+
T Consensus 151 ------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~~~~~~~~~~~---------~~~~~ 209 (259)
T 3edm_A 151 ------------GGPGALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFHDTFTKPEVR---------ERVAG 209 (259)
T ss_dssp ------------CSTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC--------------------------
T ss_pred ------------CCCCcHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCcccccccChHHH---------HHHHh
Confidence 12345689999999999988775442 399999999999877543221 1111 11122
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t 262 (520)
..+...+.+++|+|++++.++.. ......|+.+++.++...+
T Consensus 210 ~~p~~r~~~pedva~~v~~L~s~---~~~~itG~~i~vdGg~~~~ 251 (259)
T 3edm_A 210 ATSLKREGSSEDVAGLVAFLASD---DAAYVTGACYDINGGVLFS 251 (259)
T ss_dssp -----CCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESBCSSBC
T ss_pred cCCCCCCcCHHHHHHHHHHHcCc---cccCccCCEEEECCCcCCC
Confidence 33445678899999999988751 1235689999998876544
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=177.86 Aligned_cols=226 Identities=14% Similarity=0.087 Sum_probs=155.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++|++|||||+|+||++++++|+++| ++|+++|+.... +. .....+.+.....++..+.+|++|.+++.++++
T Consensus 11 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~-~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 86 (267)
T 1iy8_A 11 FTDRVVLITGGGSGLGRATAVRLAAEG-AKLSLVDVSSEG-LE--ASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTAT 86 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HH--HHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHH-HH--HHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 599995543210 00 000000000013467889999999998888776
Q ss_pred -----CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCC
Q 010005 84 -----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 -----~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|+|||+||... ...+++..+++|+.|+.++.+++ ++.+.+++|++||...+.
T Consensus 87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 157 (267)
T 1iy8_A 87 TERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIR--------- 157 (267)
T ss_dssp HHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS---------
T ss_pred HHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcc---------
Confidence 6899999999732 22456778999999988665554 455678999999987752
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCC--------chHHHHHHhcCCCceEEe
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ--------LVPLLVNLAKPGWTKFII 215 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~--------~~~~l~~~~~~g~~~~i~ 215 (520)
+..+...|+.+|+..|.+.+.++.+ +|+++++++||.++++.... ..........
T Consensus 158 ------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~-------- 223 (267)
T 1iy8_A 158 ------GIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFI-------- 223 (267)
T ss_dssp ------BCSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHH--------
T ss_pred ------CCCCCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhccccccChhhhhhHHHHHh--------
Confidence 1234568999999999988876543 58999999999998763111 0000000111
Q ss_pred cCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC
Q 010005 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (520)
Q Consensus 216 g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t 262 (520)
.......+.+++|+|++++.++.. ......|+.+++.++...+
T Consensus 224 -~~~p~~r~~~~~dvA~~v~~l~s~---~~~~~tG~~i~vdGG~~~~ 266 (267)
T 1iy8_A 224 -QVNPSKRYGEAPEIAAVVAFLLSD---DASYVNATVVPIDGGQSAA 266 (267)
T ss_dssp -TTCTTCSCBCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTTTTB
T ss_pred -ccCCCCCCcCHHHHHHHHHHHcCc---cccCCCCCEEEECCCcccC
Confidence 112234578899999999988751 1234678999998876543
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.4e-20 Score=175.69 Aligned_cols=187 Identities=15% Similarity=0.007 Sum_probs=132.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
++++|+||||+|+||++++++|+++| ++|+++++ ++.+ ..+.+.+ .++..+.+|++|.+++.++++
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G-~~V~~~~r--------~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~ 72 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKG-YRVGLMAR--------DEKRLQALAAEL--EGALPLPGDVREEGDWARAVAAM 72 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEES--------CHHHHHHHHHHS--TTCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEEC--------CHHHHHHHHHHh--hhceEEEecCCCHHHHHHHHHHH
Confidence 46789999999999999999999999 59999554 3221 0011111 267899999999988887765
Q ss_pred -----CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHH----HHHCCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~a----a~~~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|+|||+||... ...+++..+++|+.++.+++++ +++.+.+++|++||...+.
T Consensus 73 ~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~---------- 142 (234)
T 2ehd_A 73 EEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKN---------- 142 (234)
T ss_dssp HHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTS----------
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcC----------
Confidence 6899999999721 2345677899999999755554 5666788999999988762
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (520)
+..+...|+.+|+..|.+.+.++. .+|++++++||+.+.++..... . . . ..+
T Consensus 143 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---------~-~---------~-~~~ 197 (234)
T 2ehd_A 143 -----PFKGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAGNT---------P-G---------Q-AWK 197 (234)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC------------------------------------
T ss_pred -----CCCCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCccccc---------c-c---------c-cCC
Confidence 223457899999999988776643 2689999999999876532110 0 0 0 115
Q ss_pred ccHHHHHHHHHHHHH
Q 010005 225 TYVENVAHAHVCAAE 239 (520)
Q Consensus 225 i~v~Dva~ai~~~~~ 239 (520)
++.+|+|++++.++.
T Consensus 198 ~~~~dvA~~~~~l~~ 212 (234)
T 2ehd_A 198 LKPEDVAQAVLFALE 212 (234)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhC
Confidence 789999999999887
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.4e-20 Score=179.99 Aligned_cols=199 Identities=15% Similarity=0.112 Sum_probs=145.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++|++|||||+|+||+++++.|+++| ++|+++|+. .. .+. .....++..+.+|++|.+++.++++
T Consensus 14 ~~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~--------~~--~~~-~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 81 (266)
T 3p19_A 14 SMKKLVVITGASSGIGEAIARRFSEEG-HPLLLLARR--------VE--RLK-ALNLPNTLCAQVDVTDKYTFDTAITRA 81 (266)
T ss_dssp -CCCEEEEESTTSHHHHHHHHHHHHTT-CCEEEEESC--------HH--HHH-TTCCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECC--------HH--HHH-HhhcCCceEEEecCCCHHHHHHHHHHH
Confidence 346889999999999999999999999 589995543 22 111 1122368899999999998888776
Q ss_pred -----CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|++||+||.. ....+++..+++|+.|+.++.+++. +.+..++|++||...+.
T Consensus 82 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~---------- 151 (266)
T 3p19_A 82 EKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKK---------- 151 (266)
T ss_dssp HHHHCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS----------
T ss_pred HHHCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCC----------
Confidence 689999999972 2234566789999999999777764 55678999999998762
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch-HHHHHHhcCCCceEEecCCCcccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-PLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~-~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+.++...... ........... .....
T Consensus 152 -----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~--------~~~~r 218 (266)
T 3p19_A 152 -----TFPDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTSQQIKDGYDAWR--------VDMGG 218 (266)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCSCHHHHHHHHHHH--------HHTTC
T ss_pred -----CCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhcccchhhhHHHHhhc--------ccccC
Confidence 2234568999999999888877554 6899999999999987533211 11111110000 01234
Q ss_pred cccHHHHHHHHHHHHH
Q 010005 224 FTYVENVAHAHVCAAE 239 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~ 239 (520)
+++++|+|++++.++.
T Consensus 219 ~~~pedvA~av~~l~~ 234 (266)
T 3p19_A 219 VLAADDVARAVLFAYQ 234 (266)
T ss_dssp CBCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc
Confidence 7889999999999998
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=5.7e-20 Score=179.54 Aligned_cols=218 Identities=16% Similarity=0.076 Sum_probs=157.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
+++|+++||||+|+||++++++|.++| ++|+++|+. +.+ ....+.+ ..++..+.+|++|.+++.++++
T Consensus 4 l~~k~vlITGas~gIG~aia~~l~~~G-~~V~~~~r~--------~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~ 73 (263)
T 2a4k_A 4 LSGKTILVTGAASGIGRAALDLFAREG-ASLVAVDRE--------ERLLAEAVAAL-EAEAIAVVADVSDPKAVEAVFAE 73 (263)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESC--------HHHHHHHHHTC-CSSEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCC--------HHHHHHHHHHh-cCceEEEEcCCCCHHHHHHHHHH
Confidence 457899999999999999999999999 599995543 220 0000111 1467889999999998887775
Q ss_pred ------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHCC--CCEEEEeecccccccCCCCCCCCCC
Q 010005 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~g--vkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
++|++||+||... ...+++..+++|+.++.++.+++...- ..++|++||...++ .
T Consensus 74 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~--~-------- 143 (263)
T 2a4k_A 74 ALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLG--A-------- 143 (263)
T ss_dssp HHHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCC--H--------
T ss_pred HHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhcC--C--------
Confidence 4799999999721 223456789999999999999997652 35999999998761 1
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccc
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (520)
.+...|+.||+..+.+.+.++. .+|++++++||+.+.++......+.......... ....+.
T Consensus 144 ------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~---------p~~~~~ 208 (263)
T 2a4k_A 144 ------FGLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGAS---------PLGRAG 208 (263)
T ss_dssp ------HHHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTSCHHHHHHHHHTS---------TTCSCB
T ss_pred ------CCcHHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhhhcCHHHHHHHHhcC---------CCCCCc
Confidence 1246899999988888776643 3689999999999998754332232222222211 123477
Q ss_pred cHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 226 ~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
+++|+|++++.++.. ......|+.+++.++..+
T Consensus 209 ~p~dvA~~v~~l~s~---~~~~~tG~~i~vdgG~~~ 241 (263)
T 2a4k_A 209 RPEEVAQAALFLLSE---ESAYITGQALYVDGGRSI 241 (263)
T ss_dssp CHHHHHHHHHHHHSG---GGTTCCSCEEEESTTTTT
T ss_pred CHHHHHHHHHHHhCc---cccCCcCCEEEECCCccc
Confidence 899999999988761 123467899999887654
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.8e-20 Score=181.06 Aligned_cols=220 Identities=12% Similarity=0.042 Sum_probs=156.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
++|++|||||+|.||++++++|+++| ++|++.|+.... +. .....+.. ...++..+.+|++|.+++.++++
T Consensus 23 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~-~~--~~~~~l~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~ 96 (279)
T 3sju_A 23 RPQTAFVTGVSSGIGLAVARTLAARG-IAVYGCARDAKN-VS--AAVDGLRA--AGHDVDGSSCDVTSTDEVHAAVAAAV 96 (279)
T ss_dssp --CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HH--HHHHHHHT--TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHH-HH--HHHHHHHh--cCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999999 589985543210 00 00000111 13468899999999998887775
Q ss_pred ----CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH------CCCCEEEEeecccccccCCCCCCCC
Q 010005 84 ----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE------CKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 ----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~------~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|++||+||.. ....+++..+++|+.|+.++.+++.. .+..++|++||...+.
T Consensus 97 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~--------- 167 (279)
T 3sju_A 97 ERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQ--------- 167 (279)
T ss_dssp HHHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTS---------
T ss_pred HHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhcc---------
Confidence 689999999972 22345677899999999999998755 4567999999988752
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCC-----------chHHHHHHhcCCCce
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-----------LVPLLVNLAKPGWTK 212 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~-----------~~~~l~~~~~~g~~~ 212 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+.++.... ..+........
T Consensus 168 ------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 237 (279)
T 3sju_A 168 ------GVMYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNA---- 237 (279)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHHHT----
T ss_pred ------CCCCChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHHHh----
Confidence 2234568999999999888877554 68999999999998763211 11122222222
Q ss_pred EEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 213 FIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 213 ~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
......+.+++|+|++++.++.. ......|+.+++.++.
T Consensus 238 -----~~p~~r~~~pedvA~~v~~L~s~---~a~~itG~~i~vdGG~ 276 (279)
T 3sju_A 238 -----KIPLGRYSTPEEVAGLVGYLVTD---AAASITAQALNVCGGL 276 (279)
T ss_dssp -----TCTTSSCBCHHHHHHHHHHHTSS---GGGGCCSCEEEESTTC
T ss_pred -----cCCCCCCCCHHHHHHHHHHHhCc---cccCcCCcEEEECCCc
Confidence 23345678899999999987751 1234789999998875
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-19 Score=177.58 Aligned_cols=224 Identities=14% Similarity=0.118 Sum_probs=148.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.+++++|||||+|+||+++++.|+++| ++|+++|+......... ...+.. ...++.++.+|++|.+++.++++
T Consensus 27 ~~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~~~ 101 (280)
T 4da9_A 27 KARPVAIVTGGRRGIGLGIARALAASG-FDIAITGIGDAEGVAPV--IAELSG--LGARVIFLRADLADLSSHQATVDAV 101 (280)
T ss_dssp CCCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCCHHHHHHH--HHHHHH--TTCCEEEEECCTTSGGGHHHHHHHH
T ss_pred cCCCEEEEecCCCHHHHHHHHHHHHCC-CeEEEEeCCCHHHHHHH--HHHHHh--cCCcEEEEEecCCCHHHHHHHHHHH
Confidence 346789999999999999999999999 59998654211000000 000000 13468899999999988887776
Q ss_pred -----CCCEEEEcccCC---------CCCcchhhHHhhhHHHHHHHHHHHHHC----C---CCEEEEeecccccccCCCC
Q 010005 84 -----GASTVFYVDATD---------LNTDDFYNCYMIIVQGAKNVVTACREC----K---VRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 84 -----~~D~Vih~aa~~---------~~~~~~~~~~~~Nv~gt~~ll~aa~~~----g---vkr~V~~SS~~vyg~~~~~ 142 (520)
++|++||+||.. ....+++..+++|+.|+.++++++... + ..++|++||...+.
T Consensus 102 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~----- 176 (280)
T 4da9_A 102 VAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVM----- 176 (280)
T ss_dssp HHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC---------
T ss_pred HHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhcc-----
Confidence 789999999971 134567788999999999998887543 2 45899999987762
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGE 219 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~ 219 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+.++......+........ ...
T Consensus 177 ----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~--------~~~ 238 (280)
T 4da9_A 177 ----------TSPERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAAVSGKYDGLIES--------GLV 238 (280)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC---------------------------
T ss_pred ----------CCCCccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchhhcchhHHHHHhh--------cCC
Confidence 2234568999999999998877544 7899999999999987543322211111111 122
Q ss_pred cccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
+...+..++|+|++++.++.. ......|+.+++.++..
T Consensus 239 p~~r~~~pedvA~~v~~L~s~---~~~~itG~~i~vdGG~~ 276 (280)
T 4da9_A 239 PMRRWGEPEDIGNIVAGLAGG---QFGFATGSVIQADGGLS 276 (280)
T ss_dssp ---CCBCHHHHHHHHHHHHTS---TTGGGTTCEEEESTTCC
T ss_pred CcCCcCCHHHHHHHHHHHhCc---cccCCCCCEEEECCCcc
Confidence 345678899999999988861 12347799999998754
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=6.5e-20 Score=178.32 Aligned_cols=226 Identities=17% Similarity=0.154 Sum_probs=154.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHHc-
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
+|++|||||+|+||++++++|+++| ++|+++|+.. .+ ....+.+ ...++..+.+|++|.+++.++++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 72 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDG-FAVAIADYND--------ATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQ 72 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 5789999999999999999999999 5999955432 10 0000000 12357889999999999888876
Q ss_pred ------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CC-CCEEEEeecccccccCCCCCCC
Q 010005 84 ------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 ------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~g-vkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|++||+||.. ....+++..+++|+.++.++.+++.. .+ ..++|++||...+.
T Consensus 73 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------- 144 (256)
T 1geg_A 73 ARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV-------- 144 (256)
T ss_dssp HHHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS--------
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcC--------
Confidence 799999999872 12345667899999999988887754 34 57999999987652
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhc--CCCceEEecCCCc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAK--PGWTKFIIGSGEN 220 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~--~g~~~~i~g~g~~ 220 (520)
+..+...|+.||+..|.+.+.++.+ +|+++++++|+.+.++........+..... .............
T Consensus 145 -------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 217 (256)
T 1geg_A 145 -------GNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRIT 217 (256)
T ss_dssp -------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTCT
T ss_pred -------CCCCchhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccchhhhhhhhccccccCChHHHHHHHHhcCC
Confidence 1123468999999999988877543 689999999999987632111100000000 0000000011122
Q ss_pred ccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
...+.+++|+|++++.++.. ......|+.+++.++..
T Consensus 218 ~~r~~~p~dvA~~v~~l~s~---~~~~~tG~~i~vdGG~~ 254 (256)
T 1geg_A 218 LGRLSEPEDVAACVSYLASP---DSDYMTGQSLLIDGGMV 254 (256)
T ss_dssp TCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESSSSS
T ss_pred CCCCcCHHHHHHHHHHHhCc---cccCCCCCEEEeCCCcc
Confidence 33578999999999988751 12346789999988753
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.1e-20 Score=180.55 Aligned_cols=220 Identities=14% Similarity=0.037 Sum_probs=156.3
Q ss_pred CCCCeEEEEcCC--ChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 6 AIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGat--GfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
.++++||||||+ |+||+++++.|+++| ++|+++|+... . ......+... .+++..+.+|++|.+++.++++
T Consensus 19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G-~~V~~~~r~~~--~--~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~ 91 (285)
T 2p91_A 19 LEGKRALITGVANERSIAYGIAKSFHREG-AQLAFTYATPK--L--EKRVREIAKG--FGSDLVVKCDVSLDEDIKNLKK 91 (285)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTT-CEEEEEESSGG--G--HHHHHHHHHH--TTCCCEEECCTTCHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcC-CEEEEEeCCHH--H--HHHHHHHHHh--cCCeEEEEcCCCCHHHHHHHHH
Confidence 345789999999 999999999999999 59999654321 0 0000001010 1236789999999998887775
Q ss_pred -------CCCEEEEcccCCC-----------CCcchhhHHhhhHHHHHHHHHHHHHCC---CCEEEEeecccccccCCCC
Q 010005 84 -------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACRECK---VRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 84 -------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~ll~aa~~~g---vkr~V~~SS~~vyg~~~~~ 142 (520)
++|+|||+||... ...+++..+++|+.|+.++++++...- -.++|++||...+.
T Consensus 92 ~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~----- 166 (285)
T 2p91_A 92 FLEENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEK----- 166 (285)
T ss_dssp HHHHHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTS-----
T ss_pred HHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhcc-----
Confidence 6899999999732 223566789999999999999997653 26999999987652
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc--hHHHHHHhcCCCceEEecC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGS 217 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~--~~~l~~~~~~g~~~~i~g~ 217 (520)
+..+...|+.||+..|.+.+.++.+ +|+++++++||.++++..... .+.+........+
T Consensus 167 ----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p------ 230 (285)
T 2p91_A 167 ----------VVPHYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSITGFHLLMEHTTKVNP------ 230 (285)
T ss_dssp ----------BCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--CTTHHHHHHHHHHHST------
T ss_pred ----------CCCCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhcccchHHHHHHHHhcCC------
Confidence 1234568999999999998877543 589999999999999865422 2333222222111
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
...+.+++|+|++++.++.. ......|+.+++.++.
T Consensus 231 ---~~~~~~~~dva~~~~~l~s~---~~~~~tG~~~~vdgg~ 266 (285)
T 2p91_A 231 ---FGKPITIEDVGDTAVFLCSD---WARAITGEVVHVDNGY 266 (285)
T ss_dssp ---TSSCCCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTG
T ss_pred ---CCCCcCHHHHHHHHHHHcCC---cccCCCCCEEEECCCc
Confidence 22467899999999988751 1234578899998864
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=5.2e-20 Score=183.07 Aligned_cols=238 Identities=12% Similarity=0.078 Sum_probs=163.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC-CCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~-~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
.++|++|||||+|+||+++++.|+++| ++|+++|+.... +. .....+.... ...++.++.+|++|.+++.++++
T Consensus 24 l~~k~vlVTGas~gIG~aia~~L~~~G-~~V~~~~r~~~~-~~--~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 99 (297)
T 1xhl_A 24 FSGKSVIITGSSNGIGRSAAVIFAKEG-AQVTITGRNEDR-LE--ETKQQILKAGVPAEKINAVVADVTEASGQDDIINT 99 (297)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHH-HH--HHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHH-HH--HHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHH
Confidence 346899999999999999999999999 599995543210 00 0000000000 00157889999999998887776
Q ss_pred ------CCCEEEEcccCCC---------CCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCC
Q 010005 84 ------GASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 84 ------~~D~Vih~aa~~~---------~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
++|+|||+||... ...+++..+++|+.|+.++++++.. .+ .++|++||...+...
T Consensus 100 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g~IV~isS~~~~~~~----- 173 (297)
T 1xhl_A 100 TLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-GEIVNVSSIVAGPQA----- 173 (297)
T ss_dssp HHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGSSSC-----
T ss_pred HHHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CEEEEEcCchhccCC-----
Confidence 6899999999721 1234677999999999999988864 34 799999998876211
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCc---------hHHHHHHhcCCCce
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL---------VPLLVNLAKPGWTK 212 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~---------~~~l~~~~~~g~~~ 212 (520)
..+...|+.+|+..|.+.+.++. .+|++++++||+.+.++..... ...........
T Consensus 174 ---------~~~~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~--- 241 (297)
T 1xhl_A 174 ---------HSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKEC--- 241 (297)
T ss_dssp ---------CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTT---
T ss_pred ---------CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCccccccccccccccchHHHHHHHHhc---
Confidence 02346899999999999887753 3699999999999998742111 01111111111
Q ss_pred EEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHH
Q 010005 213 FIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEG 273 (520)
Q Consensus 213 ~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~ 273 (520)
.....+..++|+|++++.++.... .....|+.+++.++....+.+.+..+.+.
T Consensus 242 ------~p~~r~~~pedvA~~v~~l~s~~~--~~~itG~~i~vdGG~~~~~~~~~~~~~~~ 294 (297)
T 1xhl_A 242 ------IPVGHCGKPEEIANIIVFLADRNL--SSYIIGQSIVADGGSTLVMGMQTHDLMSV 294 (297)
T ss_dssp ------CTTSSCBCHHHHHHHHHHHHCHHH--HTTCCSCEEEESTTGGGCCGGGGSCHHHH
T ss_pred ------CCCCCCcCHHHHHHHHHHHhCCcc--cCCccCcEEEECCCccccccccccchhhh
Confidence 123357889999999998875110 12467899999998776666655444443
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.8e-20 Score=180.05 Aligned_cols=225 Identities=14% Similarity=0.061 Sum_probs=158.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
++++++||||+|.||++++++|+++| ++|++.++........ ....+ .....++.++.+|++|.+++.++++
T Consensus 24 ~~k~vlITGas~gIG~~~a~~l~~~G-~~v~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 98 (269)
T 3gk3_A 24 AKRVAFVTGGMGGLGAAISRRLHDAG-MAVAVSHSERNDHVST--WLMHE--RDAGRDFKAYAVDVADFESCERCAEKVL 98 (269)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHTTT-CEEEEEECSCHHHHHH--HHHHH--HTTTCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCchHHHHH--HHHHH--HhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999 5888855322100000 00000 0123468999999999998887776
Q ss_pred ----CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCCCCC
Q 010005 84 ----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 ----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
++|++||+||.. ....+++..+++|+.++.++++++.. .+..++|++||...+.
T Consensus 99 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~----------- 167 (269)
T 3gk3_A 99 ADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSR----------- 167 (269)
T ss_dssp HHHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH-----------
T ss_pred HHcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhcc-----------
Confidence 789999999972 13345677899999999999988753 4567999999987762
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccc
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+..+......+.... . ..........+.
T Consensus 168 ----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~----~----~~~~~~~~~~~~ 235 (269)
T 3gk3_A 168 ----GAFGQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVEAVPQDVLE----A----KILPQIPVGRLG 235 (269)
T ss_dssp ----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC-----------C----CSGGGCTTSSCB
T ss_pred ----CCCCcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhhhchhHHH----H----HhhhcCCcCCcc
Confidence 2234578999999998887766543 589999999999998765433221111 0 111223345677
Q ss_pred cHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC
Q 010005 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (520)
Q Consensus 226 ~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t 262 (520)
.++|+|++++.++.. ......|+.++++++..++
T Consensus 236 ~p~dvA~~v~~L~s~---~~~~itG~~i~vdgG~~~s 269 (269)
T 3gk3_A 236 RPDEVAALIAFLCSD---DAGFVTGADLAINGGMHMS 269 (269)
T ss_dssp CHHHHHHHHHHHTST---TCTTCCSCEEEESTTSCCC
T ss_pred CHHHHHHHHHHHhCC---CcCCeeCcEEEECCCEeCc
Confidence 899999999987751 1234779999999886543
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-19 Score=177.33 Aligned_cols=217 Identities=16% Similarity=0.062 Sum_probs=157.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCC--CCCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDS--LSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~--~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++++||||||+|+||++++++|+++| ++|++.+ .|+... ....+. ....++.++.+|++|.+++.+++
T Consensus 24 l~~k~vlVTGas~gIG~~la~~l~~~G-~~v~i~~-------~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~ 95 (267)
T 4iiu_A 24 AMSRSVLVTGASKGIGRAIARQLAADG-FNIGVHY-------HRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVL 95 (267)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEE-------SSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEe-------CCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHH
Confidence 456899999999999999999999999 5886633 222210 000000 01346889999999999888877
Q ss_pred c-------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHH-----HCCCCEEEEeecccccccCCCCC
Q 010005 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR-----ECKVRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~-----~~gvkr~V~~SS~~vyg~~~~~~ 143 (520)
+ ++|+|||+||... ...++...+++|+.++.++++++. +.+..++|++||...+.
T Consensus 96 ~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~------ 169 (267)
T 4iiu_A 96 EHEIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVM------ 169 (267)
T ss_dssp HHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHH------
T ss_pred HHHHHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhcc------
Confidence 6 6899999999722 334667899999999999999874 45567999999987763
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCc
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~ 220 (520)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+.++..... +.......... .
T Consensus 170 ---------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~~~~~~~~~~~---------p 230 (267)
T 4iiu_A 170 ---------GNRGQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEME-ESALKEAMSMI---------P 230 (267)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCCC-HHHHHHHHHTC---------T
T ss_pred ---------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCccccc-HHHHHHHHhcC---------C
Confidence 2234578999999888777665443 589999999999999876543 33333322222 2
Q ss_pred ccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
...+.+++|+|+++..++.. ......|+++++.++
T Consensus 231 ~~~~~~~edva~~~~~L~s~---~~~~itG~~i~vdGG 265 (267)
T 4iiu_A 231 MKRMGQAEEVAGLASYLMSD---IAGYVTRQVISINGG 265 (267)
T ss_dssp TCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTT
T ss_pred CCCCcCHHHHHHHHHHHhCC---cccCccCCEEEeCCC
Confidence 23567899999999988862 124578999999875
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-20 Score=182.71 Aligned_cols=220 Identities=14% Similarity=0.087 Sum_probs=159.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++|++|||||+|+||++++++|+++| ++|++. .|+.... ...+.+ ...++..+.+|++|.+++.+++
T Consensus 24 l~gk~~lVTGas~gIG~aia~~la~~G-~~V~~~--------~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~ 94 (271)
T 4ibo_A 24 LGGRTALVTGSSRGLGRAMAEGLAVAG-ARILIN--------GTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAF 94 (271)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEC--------CSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEE--------eCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 356899999999999999999999999 599994 4443210 000000 1246788999999999988887
Q ss_pred c-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCC
Q 010005 83 E-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
+ ++|++||+||.. ....+++..+++|+.|+.++.+++.. .+..++|++||...+.
T Consensus 95 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~~------- 167 (271)
T 4ibo_A 95 ARLDEQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSEL------- 167 (271)
T ss_dssp HHHHHHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-------
T ss_pred HHHHHHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCC-------
Confidence 6 689999999972 23456678899999999999887754 3567999999987652
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch--HHHHHHhcCCCceEEecCCC
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGE 219 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~--~~l~~~~~~g~~~~i~g~g~ 219 (520)
+..+...|+.+|+..+.+.+.++.+ +|+++.+++||.+.++...... +.+....... .
T Consensus 168 --------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~---------~ 230 (271)
T 4ibo_A 168 --------ARATVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQALIDNPEFDAWVKAR---------T 230 (271)
T ss_dssp --------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHHCHHHHHHHHHH---------S
T ss_pred --------CCCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchhhcccCHHHHHHHHhc---------C
Confidence 2234678999999999998877544 6899999999999987532211 1222222221 1
Q ss_pred cccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
....+..++|+|++++.++.. ......|+.+++.++...
T Consensus 231 p~~r~~~pedva~~v~~L~s~---~~~~itG~~i~vdGG~~~ 269 (271)
T 4ibo_A 231 PAKRWGKPQELVGTAVFLSAS---ASDYVNGQIIYVDGGMLS 269 (271)
T ss_dssp TTCSCBCGGGGHHHHHHHHSG---GGTTCCSCEEEESTTGGG
T ss_pred CCCCCcCHHHHHHHHHHHhCc---cccCCCCcEEEECCCeec
Confidence 233567799999999988751 124577999999987643
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=7.9e-20 Score=175.44 Aligned_cols=203 Identities=14% Similarity=0.012 Sum_probs=150.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
++|+||||||+|+||++++++|+++| ++|+++|+ ++.+ .. .....+.+|++|.+++.++++
T Consensus 2 ~~k~vlITGas~gIG~~~a~~l~~~G-~~V~~~~r--------~~~~--~~-----~~~~~~~~D~~~~~~~~~~~~~~~ 65 (236)
T 1ooe_A 2 SSGKVIVYGGKGALGSAILEFFKKNG-YTVLNIDL--------SAND--QA-----DSNILVDGNKNWTEQEQSILEQTA 65 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTT-EEEEEEES--------SCCT--TS-----SEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEec--------Cccc--cc-----cccEEEeCCCCCHHHHHHHHHHHH
Confidence 45899999999999999999999999 69999554 3321 11 134677899999988877765
Q ss_pred ------CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHHHHCC--CCEEEEeecccccccCCCCCCCCC
Q 010005 84 ------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 ------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa~~~g--vkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|+|||+||... ...+++..+++|+.++.++.+++...- ..++|++||...+.
T Consensus 66 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~---------- 135 (236)
T 1ooe_A 66 SSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG---------- 135 (236)
T ss_dssp HHHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS----------
T ss_pred HHhCCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhcc----------
Confidence 6899999999621 123457789999999999999998742 24899999998762
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCCC-----CceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNID-----GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
+..+...|+.+|+..|.+.+.++.+. |++++++||+.+.++. ....... ....
T Consensus 136 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~--------~~~~~~~---------~~~~ 193 (236)
T 1ooe_A 136 -----PTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPM--------NRKWMPN---------ADHS 193 (236)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHH--------HHHHSTT---------CCGG
T ss_pred -----CCCCcHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcc--------hhhcCCC---------cccc
Confidence 22345689999999999999887654 5999999999998762 1111111 1223
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.++..+|+|++++.++... ......|+.+.+.++.
T Consensus 194 ~~~~~~dvA~~i~~~l~s~--~~~~~~G~~~~v~gg~ 228 (236)
T 1ooe_A 194 SWTPLSFISEHLLKWTTET--SSRPSSGALLKITTEN 228 (236)
T ss_dssp GCBCHHHHHHHHHHHHHCG--GGCCCTTCEEEEEEET
T ss_pred ccCCHHHHHHHHHHHHcCC--CcccccccEEEEecCC
Confidence 5677899999998666411 1234678899887754
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=9.7e-20 Score=179.51 Aligned_cols=225 Identities=12% Similarity=0.058 Sum_probs=156.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC-CCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~-~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
.++|++|||||+|+||++++++|+++| ++|+++|+.... +. .....+.... ...++..+.+|++|.+++.++++
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~-~~--~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 79 (280)
T 1xkq_A 4 FSNKTVIITGSSNGIGRTTAILFAQEG-ANVTITGRSSER-LE--ETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINS 79 (280)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHH-HH--HHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHH-HH--HHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHH
Confidence 457899999999999999999999999 599996543210 00 0000000000 01157889999999998887775
Q ss_pred ------CCCEEEEcccCCC-----------CCcchhhHHhhhHHHHHHHHHHHHHC----CCCEEEEeecccccccCCCC
Q 010005 84 ------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 84 ------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~ll~aa~~~----gvkr~V~~SS~~vyg~~~~~ 142 (520)
++|+|||+||... ...+++..+++|+.++.++++++... + +++|++||...+...
T Consensus 80 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~--- 155 (280)
T 1xkq_A 80 TLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVAGPQA--- 155 (280)
T ss_dssp HHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSSSC---
T ss_pred HHHhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC-CcEEEecCccccCCC---
Confidence 6899999999721 12346778999999999999988643 4 799999998876211
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCc---------hHHHHHHhcCCC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL---------VPLLVNLAKPGW 210 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~---------~~~l~~~~~~g~ 210 (520)
..+...|+.+|+..|.+.+.++. .+|+++++++|+.++++..... ...........
T Consensus 156 -----------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~- 223 (280)
T 1xkq_A 156 -----------QPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKEC- 223 (280)
T ss_dssp -----------CCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTT-
T ss_pred -----------CCcccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCcccccccccccccchHHHHHHHHcC-
Confidence 02356899999999999887763 3699999999999998742211 01112221111
Q ss_pred ceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 211 TKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 211 ~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
.....+.+++|+|++++.++.... .....|+.+++.++..
T Consensus 224 --------~p~~~~~~pedvA~~v~~l~s~~~--~~~~tG~~i~vdgG~~ 263 (280)
T 1xkq_A 224 --------IPIGAAGKPEHIANIILFLADRNL--SFYILGQSIVADGGTS 263 (280)
T ss_dssp --------CTTSSCBCHHHHHHHHHHHHCHHH--HTTCCSCEEEESTTGG
T ss_pred --------CCCCCCCCHHHHHHHHHHhcCccc--ccCccCCeEEECCCcc
Confidence 123457899999999998875110 1246789999988753
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-20 Score=179.12 Aligned_cols=216 Identities=14% Similarity=0.124 Sum_probs=156.9
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHH
Q 010005 4 DEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 4 ~~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
+..++|++|||||+|.||++++++|+++| ++|++.|+ +.... .....+ ..++..+.+|++|.+++.+++
T Consensus 2 ~~l~gk~vlVTGas~gIG~a~a~~l~~~G-~~V~~~~r--------~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~ 71 (247)
T 3rwb_A 2 ERLAGKTALVTGAAQGIGKAIAARLAADG-ATVIVSDI--------NAEGAKAAAASI-GKKARAIAADISDPGSVKALF 71 (247)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECS--------CHHHHHHHHHHH-CTTEEECCCCTTCHHHHHHHH
T ss_pred CCcCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeC--------CHHHHHHHHHHh-CCceEEEEcCCCCHHHHHHHH
Confidence 34567999999999999999999999999 59999544 32210 000011 346788999999999888877
Q ss_pred c-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHH----HHHCC-CCEEEEeecccccccCCCCC
Q 010005 83 E-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTA----CRECK-VRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~a----a~~~g-vkr~V~~SS~~vyg~~~~~~ 143 (520)
+ ++|++||+||.. ....+++..+++|+.|+.++.++ +++.+ ..++|++||...+.
T Consensus 72 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------ 145 (247)
T 3rwb_A 72 AEIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFA------ 145 (247)
T ss_dssp HHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHH------
T ss_pred HHHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhcc------
Confidence 6 689999999972 23345678999999999999988 45555 57999999988763
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc----hHHHHHHhcCCCceEEec
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL----VPLLVNLAKPGWTKFIIG 216 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~----~~~l~~~~~~g~~~~i~g 216 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+.++..... ...+....
T Consensus 146 ---------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~---------- 206 (247)
T 3rwb_A 146 ---------GTPNMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKASPHNEAFGFVEML---------- 206 (247)
T ss_dssp ---------TCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSGGGGGHHHHHHH----------
T ss_pred ---------CCCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCccccccChhHHHHHHhcc----------
Confidence 2234578999999999888877654 689999999999987532111 11111110
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.....+...+|+|+++..++.. ......|+++++.++.
T Consensus 207 --~~~~r~~~pedva~~v~~L~s~---~~~~itG~~i~vdGG~ 244 (247)
T 3rwb_A 207 --QAMKGKGQPEHIADVVSFLASD---DARWITGQTLNVDAGM 244 (247)
T ss_dssp --SSSCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTS
T ss_pred --cccCCCcCHHHHHHHHHHHhCc---cccCCCCCEEEECCCc
Confidence 1223456799999999988761 1235689999998864
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.1e-20 Score=180.09 Aligned_cols=218 Identities=16% Similarity=0.122 Sum_probs=157.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
+++++|||||+|.||+++++.|+++| ++|+++|+.. .+ ..+.+.+ ..++.++.+|++|.+++.++++
T Consensus 29 ~~k~vlVTGas~GIG~aia~~l~~~G-~~Vi~~~r~~--------~~~~~~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~ 98 (281)
T 3ppi_A 29 EGASAIVSGGAGGLGEATVRRLHADG-LGVVIADLAA--------EKGKALADEL-GNRAEFVSTNVTSEDSVLAAIEAA 98 (281)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHH-CTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCh--------HHHHHHHHHh-CCceEEEEcCCCCHHHHHHHHHHH
Confidence 45789999999999999999999999 5999955432 21 0011111 2468899999999999888876
Q ss_pred ----CCCEEEEc-ccCCC------------CCcchhhHHhhhHHHHHHHHHHHHHC----------CCCEEEEeeccccc
Q 010005 84 ----GASTVFYV-DATDL------------NTDDFYNCYMIIVQGAKNVVTACREC----------KVRRLVYNSTADVV 136 (520)
Q Consensus 84 ----~~D~Vih~-aa~~~------------~~~~~~~~~~~Nv~gt~~ll~aa~~~----------gvkr~V~~SS~~vy 136 (520)
+.|++||+ |+... ...++...+++|+.++.++++++... +-.++|++||...+
T Consensus 99 ~~~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 178 (281)
T 3ppi_A 99 NQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGY 178 (281)
T ss_dssp TTSSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGT
T ss_pred HHhCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEeccccc
Confidence 57999999 44411 11235789999999999999988632 33589999999876
Q ss_pred ccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceE
Q 010005 137 FDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKF 213 (520)
Q Consensus 137 g~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~ 213 (520)
. +..+...|+.||+..+.+.+.++.+ +|+++.+++||.+..+......+..........+
T Consensus 179 ~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~-- 241 (281)
T 3ppi_A 179 E---------------GQIGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMESVGEEALAKFAANIP-- 241 (281)
T ss_dssp S---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTTCHHHHHHHHHTCC--
T ss_pred C---------------CCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhhcccHHHHHHHHhcCC--
Confidence 2 2234578999999988887766543 5899999999999865332222222222222221
Q ss_pred EecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC
Q 010005 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (520)
Q Consensus 214 i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t 262 (520)
....+.+++|+|++++.++. .....|+.+++.++..++
T Consensus 242 ------~~~~~~~pedvA~~v~~l~s-----~~~~tG~~i~vdGG~~~~ 279 (281)
T 3ppi_A 242 ------FPKRLGTPDEFADAAAFLLT-----NGYINGEVMRLDGAQRFT 279 (281)
T ss_dssp ------SSSSCBCHHHHHHHHHHHHH-----CSSCCSCEEEESTTCCCC
T ss_pred ------CCCCCCCHHHHHHHHHHHHc-----CCCcCCcEEEECCCcccC
Confidence 01457889999999999997 467789999999887654
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-19 Score=175.28 Aligned_cols=232 Identities=11% Similarity=0.108 Sum_probs=159.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
..++|++|||||+|.||++++++|+++| ++|++.|+.... . ......+........+..+.+|++|.+++.++++
T Consensus 7 ~l~~k~~lVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~-~--~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 82 (267)
T 3t4x_A 7 QLKGKTALVTGSTAGIGKAIATSLVAEG-ANVLINGRREEN-V--NETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEK 82 (267)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSHHH-H--HHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHH-H--HHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHh
Confidence 3456899999999999999999999999 599996543210 0 0000001111112356789999999998888876
Q ss_pred --CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCCCCCc
Q 010005 84 --GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDETL 150 (520)
Q Consensus 84 --~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~ 150 (520)
++|++||+||.. ....+++..+++|+.++.++.+++ ++.+..++|++||...+.
T Consensus 83 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------- 149 (267)
T 3t4x_A 83 YPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIM------------- 149 (267)
T ss_dssp CCCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTS-------------
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhcc-------------
Confidence 689999999972 123456677999999987776665 445667999999998762
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceE----------EecC
Q 010005 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKF----------IIGS 217 (520)
Q Consensus 151 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~----------i~g~ 217 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+.++.. ..+......+.... ....
T Consensus 150 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
T 3t4x_A 150 --PSQEMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGV----ETMLNSLYPNEQLTIEEAEKRFMKENRP 223 (267)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHHH----HHHHHHSSTTSCCCHHHHHHHHHHHHCT
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCccH----HHHHhhcCcccCCCHHHHHHHHhhccCC
Confidence 2234678999999999998877643 579999999999886521 11111111100000 0001
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t 262 (520)
......+.+++|+|++++.++.. ......|+++++.++...+
T Consensus 224 ~~~~~r~~~pedvA~~v~fL~s~---~~~~itG~~i~vdGG~~~s 265 (267)
T 3t4x_A 224 TSIIQRLIRPEEIAHLVTFLSSP---LSSAINGSALRIDGGLVRS 265 (267)
T ss_dssp TCSSCSCBCTHHHHHHHHHHHSG---GGTTCCSCEEEESTTCSCS
T ss_pred cccccCccCHHHHHHHHHHHcCc---cccCccCCeEEECCCcccc
Confidence 12345688999999999988761 1245789999999886554
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.9e-19 Score=173.09 Aligned_cols=219 Identities=15% Similarity=0.116 Sum_probs=157.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~-~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
..++|++|||||+|.||++++++|+++| ++|++.|..... +... ...+.. ...++..+.+|++|.+++.++++
T Consensus 28 ~l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~---~~~~~~~~l~~--~~~~~~~~~~Dv~d~~~v~~~~~ 101 (271)
T 3v2g_A 28 SLAGKTAFVTGGSRGIGAAIAKRLALEG-AAVALTYVNAAE---RAQAVVSEIEQ--AGGRAVAIRADNRDAEAIEQAIR 101 (271)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCHH---HHHHHHHHHHH--TTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCCHH---HHHHHHHHHHh--cCCcEEEEECCCCCHHHHHHHHH
Confidence 4457899999999999999999999999 588885432210 0000 000000 13467899999999998888776
Q ss_pred -------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|++||+||.. ....+++..+++|+.|+.++++++... +..++|++||......
T Consensus 102 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~~--------- 172 (271)
T 3v2g_A 102 ETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAELV--------- 172 (271)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTCC---------
T ss_pred HHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhccC---------
Confidence 789999999972 233466789999999999999999865 3469999998654310
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCC---chHHHHHHhcCCCceEEecCCCcc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ---LVPLLVNLAKPGWTKFIIGSGENM 221 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~---~~~~l~~~~~~g~~~~i~g~g~~~ 221 (520)
+..+...|+.+|+..|.+.+.++.+ +|+++.+++|+.+.++.... ....... . ...
T Consensus 173 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~----~---------~~~ 234 (271)
T 3v2g_A 173 -----PWPGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPADGDHAEAQRE----R---------IAT 234 (271)
T ss_dssp -----CSTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSSCSSHHHHHH----T---------CTT
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCcccccchhHHHHHh----c---------CCC
Confidence 1234678999999999998877544 58999999999999876432 1111111 1 112
Q ss_pred cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..+..++|+|++++.++.. ......|+.+++.++.
T Consensus 235 ~r~~~pedvA~~v~fL~s~---~~~~itG~~i~vdGG~ 269 (271)
T 3v2g_A 235 GSYGEPQDIAGLVAWLAGP---QGKFVTGASLTIDGGA 269 (271)
T ss_dssp SSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTT
T ss_pred CCCCCHHHHHHHHHHHhCc---ccCCccCCEEEeCcCc
Confidence 3467799999999988751 1245789999998864
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.6e-20 Score=180.02 Aligned_cols=224 Identities=13% Similarity=0.086 Sum_probs=158.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.+++++|||||+|.||++++++|+++| ++|++.|+.... .. .....+.. ....++..+.+|++|.+++.++++
T Consensus 25 l~~k~~lVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~-~~--~~~~~~~~-~~~~~~~~~~~Dv~~~~~v~~~~~~~ 99 (277)
T 4fc7_A 25 LRDKVAFITGGGSGIGFRIAEIFMRHG-CHTVIASRSLPR-VL--TAARKLAG-ATGRRCLPLSMDVRAPPAVMAAVDQA 99 (277)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEESCHHH-HH--HHHHHHHH-HHSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHH-HH--HHHHHHHH-hcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 599995543210 00 00000000 012468899999999998887775
Q ss_pred -----CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|++||+||.. ....+++..+++|+.|+.++.+++. +.+..++|++||...+.
T Consensus 100 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------- 169 (277)
T 4fc7_A 100 LKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNR---------- 169 (277)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHH----------
T ss_pred HHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCC----------
Confidence 689999999962 2345677899999999999999884 33456999999988762
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCC---CchHHHHHHhcCCCceEEecCCCcc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT---QLVPLLVNLAKPGWTKFIIGSGENM 221 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~---~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+.++... ...+......... ...
T Consensus 170 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~---------~p~ 235 (277)
T 4fc7_A 170 -----GQALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTA---------SPL 235 (277)
T ss_dssp -----TCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHHHSCCHHHHHHHHHT---------STT
T ss_pred -----CCCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhhhhccCCHHHHHHHhcc---------CCC
Confidence 2234568999999999988877544 5899999999999986311 0011112222111 223
Q ss_pred cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
..+..++|+|++++.++.. ......|+++++.++..+
T Consensus 236 ~r~~~p~dvA~~v~fL~s~---~~~~itG~~i~vdGG~~~ 272 (277)
T 4fc7_A 236 QRLGNKTEIAHSVLYLASP---LASYVTGAVLVADGGAWL 272 (277)
T ss_dssp SSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTHHH
T ss_pred CCCcCHHHHHHHHHHHcCC---ccCCcCCCEEEECCCccc
Confidence 4567899999999988861 124578999999987544
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-19 Score=177.79 Aligned_cols=220 Identities=14% Similarity=0.101 Sum_probs=159.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++|++|||||+|+||++++++|+++| ++|++.|+.. +.. .+.+.+ ...++..+.+|++|.+++.+++
T Consensus 30 l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~ 100 (276)
T 3r1i_A 30 LSGKRALITGASTGIGKKVALAYAEAG-AQVAVAARHS--------DALQVVADEIAGVGGKALPIRCDVTQPDQVRGML 100 (276)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESSG--------GGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHH
Confidence 356899999999999999999999999 5999955432 210 000000 1246789999999999988887
Q ss_pred c-------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHC----C-CCEEEEeecccccccCCCCC
Q 010005 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~----g-vkr~V~~SS~~vyg~~~~~~ 143 (520)
+ ++|++||+||... ...+++..+++|+.|+.++++++... + -.++|++||...+...
T Consensus 101 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~---- 176 (276)
T 3r1i_A 101 DQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIIN---- 176 (276)
T ss_dssp HHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC----
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccC----
Confidence 6 7899999999821 23456778899999999999987543 3 2589999998765211
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCc
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~ 220 (520)
...+...|+.||+..+.+.+.++.+ +|+++.+++||.+..+..... +......... ..
T Consensus 177 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~-~~~~~~~~~~---------~p 237 (276)
T 3r1i_A 177 ---------IPQQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEPL-ADYHALWEPK---------IP 237 (276)
T ss_dssp ---------CSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTGGG-GGGHHHHGGG---------ST
T ss_pred ---------CCCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccc-hHHHHHHHhc---------CC
Confidence 1124568999999999998887654 689999999999998764322 1122222211 12
Q ss_pred ccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
...+..++|+|++++.++.. ......|+++++.++..
T Consensus 238 ~~r~~~pedvA~~v~fL~s~---~~~~itG~~i~vdGG~~ 274 (276)
T 3r1i_A 238 LGRMGRPEELTGLYLYLASA---ASSYMTGSDIVIDGGYT 274 (276)
T ss_dssp TSSCBCGGGSHHHHHHHHSG---GGTTCCSCEEEESTTTT
T ss_pred CCCCcCHHHHHHHHHHHcCc---cccCccCcEEEECcCcc
Confidence 33577899999999988762 12457899999988753
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.3e-19 Score=176.01 Aligned_cols=229 Identities=14% Similarity=0.044 Sum_probs=158.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
+++++|||||+|.||++++++|.++| ++|+++|+.... +. .....+.. ...++..+.+|++|.+++.++++
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~-~~--~~~~~l~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~ 100 (283)
T 3v8b_A 27 PSPVALITGAGSGIGRATALALAADG-VTVGALGRTRTE-VE--EVADEIVG--AGGQAIALEADVSDELQMRNAVRDLV 100 (283)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESSHHH-HH--HHHHHHTT--TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHH-HH--HHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999 599996553210 00 00001111 13467899999999988887775
Q ss_pred ----CCCEEEEcccCC--------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 ----GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 ----~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|++||+||.. ....+++..+++|+.|+.++++++ ++.+..++|++||...+...
T Consensus 101 ~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~-------- 172 (283)
T 3v8b_A 101 LKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRTF-------- 172 (283)
T ss_dssp HHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBC--------
T ss_pred HHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccCC--------
Confidence 689999999972 122355778999999999999998 55667799999998765210
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcc--c
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM--S 222 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~--~ 222 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+..+........-..... .+........+. .
T Consensus 173 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~ 245 (283)
T 3v8b_A 173 -----TTPGATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRHEEETA--IPVEWPKGQVPITDG 245 (283)
T ss_dssp -----CSTTCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTTBCCHHHHS--CCCBCTTCSCGGGTT
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCcccccccccchhhh--hhhhhhhhcCccccC
Confidence 2234578999999999998877643 689999999999998754321100000000 000111111122 3
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.+..++|+|++++.++.. ......|+++++.++.
T Consensus 246 r~~~pedvA~~v~fL~s~---~a~~itG~~i~vdGG~ 279 (283)
T 3v8b_A 246 QPGRSEDVAELIRFLVSE---RARHVTGSPVWIDGGQ 279 (283)
T ss_dssp CCBCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTH
T ss_pred CCCCHHHHHHHHHHHcCc---cccCCcCCEEEECcCc
Confidence 567899999999988751 1245679999998764
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.6e-19 Score=172.61 Aligned_cols=223 Identities=15% Similarity=0.065 Sum_probs=160.0
Q ss_pred CCCCCeEEEEcCCCh--hHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHH
Q 010005 5 EAIPRTCVVLNGRGF--VGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 5 ~~~~~~ILVtGatGf--IG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
..+++++|||||+|+ ||++++++|+++| ++|++.++.... ......+.+.....++.++.+|++|.+++.+++
T Consensus 4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G-~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 78 (266)
T 3oig_A 4 SLEGRNIVVMGVANKRSIAWGIARSLHEAG-ARLIFTYAGERL----EKSVHELAGTLDRNDSIILPCDVTNDAEIETCF 78 (266)
T ss_dssp CCTTCEEEEECCCSTTSHHHHHHHHHHHTT-CEEEEEESSGGG----HHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCcHHHHHHHHHHHCC-CEEEEecCchHH----HHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHH
Confidence 456789999999999 9999999999999 599986543210 000001111122236899999999998888777
Q ss_pred c-------CCCEEEEcccCCC-----------CCcchhhHHhhhHHHHHHHHHHHHHCC--CCEEEEeecccccccCCCC
Q 010005 83 E-------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~ll~aa~~~g--vkr~V~~SS~~vyg~~~~~ 142 (520)
+ ++|++||+||... ...++...+++|+.++.++++++...- -.++|++||...+.
T Consensus 79 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~----- 153 (266)
T 3oig_A 79 ASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGEL----- 153 (266)
T ss_dssp HHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS-----
T ss_pred HHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccc-----
Confidence 5 6899999998632 234556789999999999999998763 24899999988752
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc--hHHHHHHhcCCCceEEecC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGS 217 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~--~~~l~~~~~~g~~~~i~g~ 217 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+..+..... .+..........
T Consensus 154 ----------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~------- 216 (266)
T 3oig_A 154 ----------VMPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGISDFNSILKDIEERA------- 216 (266)
T ss_dssp ----------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHS-------
T ss_pred ----------cCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccccchHHHHHHHHhcC-------
Confidence 2234568999999999988876543 589999999999998654322 122222222211
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
....+..++|+|++++.++.. ......|+.+++.++.
T Consensus 217 --~~~~~~~p~dva~~v~~l~s~---~~~~~tG~~i~vdGG~ 253 (266)
T 3oig_A 217 --PLRRTTTPEEVGDTAAFLFSD---MSRGITGENLHVDSGF 253 (266)
T ss_dssp --TTSSCCCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTG
T ss_pred --CCCCCCCHHHHHHHHHHHcCC---chhcCcCCEEEECCCe
Confidence 123467899999999988862 1245789999999875
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.5e-19 Score=172.57 Aligned_cols=204 Identities=14% Similarity=0.051 Sum_probs=149.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCC--cEEEEecCCcccccCCCCCCC-CCCCCC-CCCCcEEEEecCCCHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQSLQLDPSESNS-LLPDSL-SSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~--~~V~~~D~~~~~~l~r~~~~~-~l~~~~-~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
.++|+||||||+|+||++++++|+++|. ++|+++++. .... .+.+.. ...++.++.+|++|.+++.++
T Consensus 19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~--------~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~ 90 (267)
T 1sny_A 19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRN--------REQAKELEDLAKNHSNIHILEIDLRNFDAYDKL 90 (267)
T ss_dssp -CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESC--------TTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecC--------hhhhHHHHHhhccCCceEEEEecCCChHHHHHH
Confidence 4568999999999999999999999993 489995543 2210 010000 024688999999999988888
Q ss_pred Hc---------CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHHHHC----------C-----CCEEEE
Q 010005 82 LE---------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC----------K-----VRRLVY 129 (520)
Q Consensus 82 l~---------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa~~~----------g-----vkr~V~ 129 (520)
++ ++|+|||+||... ...++...+++|+.++.++++++... + ..++|+
T Consensus 91 ~~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 170 (267)
T 1sny_A 91 VADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIIN 170 (267)
T ss_dssp HHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEE
T ss_pred HHHHHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEE
Confidence 76 7999999999732 23456678999999999999998654 2 468999
Q ss_pred eecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHh
Q 010005 130 NSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLA 206 (520)
Q Consensus 130 ~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~ 206 (520)
+||...+.... +..+...|+.+|+..|.+.+.++.+ +|++++++||+.+..+....
T Consensus 171 isS~~~~~~~~------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--------- 229 (267)
T 1sny_A 171 MSSILGSIQGN------------TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGS--------- 229 (267)
T ss_dssp ECCGGGCSTTC------------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTCT---------
T ss_pred EecccccccCC------------CCCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCCCCC---------
Confidence 99998863211 1134568999999999998877654 68999999999997664211
Q ss_pred cCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEe
Q 010005 207 KPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFIT 256 (520)
Q Consensus 207 ~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~ 256 (520)
..++..+|+|+.++.++... .....|+.+.+.
T Consensus 230 ---------------~~~~~~~~~a~~~~~~~~~~---~~~~~G~~~~~~ 261 (267)
T 1sny_A 230 ---------------SAPLDVPTSTGQIVQTISKL---GEKQNGGFVNYD 261 (267)
T ss_dssp ---------------TCSBCHHHHHHHHHHHHHHC---CGGGTTCEECTT
T ss_pred ---------------CCCCCHHHHHHHHHHHHHhc---CcCCCCcEEccC
Confidence 12467899999999988732 234556655443
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.5e-20 Score=179.43 Aligned_cols=222 Identities=10% Similarity=0.071 Sum_probs=157.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
++|++|||||+|.||++++++|.++| ++|++.|+.... +. .....+.+ ....++.++.+|++|.+++.++++
T Consensus 19 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~-~~--~~~~~l~~-~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 93 (266)
T 4egf_A 19 DGKRALITGATKGIGADIARAFAAAG-ARLVLSGRDVSE-LD--AARRALGE-QFGTDVHTVAIDLAEPDAPAELARRAA 93 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HH--HHHHHHHH-HHCCCEEEEECCTTSTTHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHH-HH--HHHHHHHH-hcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 589995543210 00 00000000 013468899999999988877765
Q ss_pred ----CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHC----C-CCEEEEeecccccccCCCCCCCCC
Q 010005 84 ----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 ----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~----g-vkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|++||+||.. ....+++..+++|+.++.++.+++... + -.++|++||...+.
T Consensus 94 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 163 (266)
T 4egf_A 94 EAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALA---------- 163 (266)
T ss_dssp HHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS----------
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhcc----------
Confidence 789999999972 223456778999999999999988543 2 35999999998762
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc--hHHHHHHhcCCCceEEecCCCccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~--~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
+..+...|+.+|+..+.+.+.++.+ +|+++.+++|+.+.++..... .+......... ....
T Consensus 164 -----~~~~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~---------~p~~ 229 (266)
T 4egf_A 164 -----PLPDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRVWGDEAKSAPMIAR---------IPLG 229 (266)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHHTCSHHHHHHHHTT---------CTTS
T ss_pred -----CCCCChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhhccChHHHHHHHhc---------CCCC
Confidence 2234578999999999988877654 589999999999987632110 11112222222 2334
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
.+..++|+|++++.++.. ......|+++++.++..
T Consensus 230 r~~~p~dva~~v~~L~s~---~~~~itG~~i~vdGG~~ 264 (266)
T 4egf_A 230 RFAVPHEVSDAVVWLASD---AASMINGVDIPVDGGYT 264 (266)
T ss_dssp SCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred CCcCHHHHHHHHHHHhCc---hhcCccCcEEEECCCcc
Confidence 577899999999988761 12457799999998754
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-19 Score=176.65 Aligned_cols=217 Identities=14% Similarity=0.082 Sum_probs=153.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
+|++|||||+|.||++++++|+++|. ..|++.+ |+... ..+.+.. ..++.++.+|++|.+++.++++
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~--------r~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~ 72 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVA--------RSEAPLKKLKEKY-GDRFFYVVGDITEDSVLKQLVNAA 72 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEE--------SCHHHHHHHHHHH-GGGEEEEESCTTSHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEec--------CCHHHHHHHHHHh-CCceEEEECCCCCHHHHHHHHHHH
Confidence 58999999999999999999999862 4787744 33221 0010111 2367889999999998887775
Q ss_pred -----CCCEEEEcccCC--------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCC
Q 010005 84 -----GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 -----~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|++||+||.. ....+++..+++|+.|+.++.+++ ++.+ .++|++||...+.
T Consensus 73 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-g~iv~isS~~~~~--------- 142 (254)
T 3kzv_A 73 VKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN-GNVVFVSSDACNM--------- 142 (254)
T ss_dssp HHHHSCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCSCCCC---------
T ss_pred HHhcCCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CeEEEEcCchhcc---------
Confidence 689999999972 123456779999999999999998 5555 6999999987752
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC-CCceEEEEecCccccCCCCCc---------hHHHHHHhcCCCceEEec
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI-DGLLTCALRPSNVFGPGDTQL---------VPLLVNLAKPGWTKFIIG 216 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-~gi~~~ilRp~~vyGp~~~~~---------~~~l~~~~~~g~~~~i~g 216 (520)
+..+...|+.||+..|.+.+.++.+ .|+++.+++||.+.++..... .+.........
T Consensus 143 ------~~~~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~------- 209 (254)
T 3kzv_A 143 ------YFSSWGAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGL------- 209 (254)
T ss_dssp ------SSCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHHHHHH-------
T ss_pred ------CCCCcchHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcccchhHHHhhcccCccccCHHHHHHHHHH-------
Confidence 2234568999999999999887754 489999999999998754321 12222221111
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
.....+.+++|+|++++.++.... .....|+.+++.+++.
T Consensus 210 --~~~~r~~~p~dva~~v~~L~s~~~--~~~itG~~i~vdg~~~ 249 (254)
T 3kzv_A 210 --KENNQLLDSSVPATVYAKLALHGI--PDGVNGQYLSYNDPAL 249 (254)
T ss_dssp --HTTC----CHHHHHHHHHHHHHCC--CGGGTTCEEETTCGGG
T ss_pred --HhcCCcCCcccHHHHHHHHHhhcc--cCCCCccEEEecCccc
Confidence 123357789999999998887210 1347899999887653
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.8e-19 Score=172.02 Aligned_cols=231 Identities=15% Similarity=0.007 Sum_probs=159.2
Q ss_pred CCCCCCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHH
Q 010005 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 1 m~~~~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (520)
|+....+++++|||||+|.||++++++|.++| ++|++.|+.... +. .....+.......++..+.+|++|.+++.+
T Consensus 1 M~~~~l~~k~~lVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~-~~--~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~ 76 (265)
T 3lf2_A 1 MKPYDLSEAVAVVTGGSSGIGLATVELLLEAG-AAVAFCARDGER-LR--AAESALRQRFPGARLFASVCDVLDALQVRA 76 (265)
T ss_dssp --CCCCTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHH-HH--HHHHHHHHHSTTCCEEEEECCTTCHHHHHH
T ss_pred CCccCcCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHH-HH--HHHHHHHHhcCCceEEEEeCCCCCHHHHHH
Confidence 55556678999999999999999999999999 589995543210 00 000001010122358889999999988877
Q ss_pred HHc-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCC
Q 010005 81 VLE-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 81 ~l~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~ 142 (520)
+++ ++|++||+||.. ....++...+++|+.++.++.+++.. .+..++|++||...+.
T Consensus 77 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----- 151 (265)
T 3lf2_A 77 FAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQ----- 151 (265)
T ss_dssp HHHHHHHHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTS-----
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCC-----
Confidence 765 689999999972 23345678999999999999999854 3456899999987752
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCC----------chHHHHHHhcCC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ----------LVPLLVNLAKPG 209 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~----------~~~~l~~~~~~g 209 (520)
+..+...|+.+|+..+.+.+.++.+ +|+++.+++||.+.+|.... -...+.......
T Consensus 152 ----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (265)
T 3lf2_A 152 ----------PEPHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARN 221 (265)
T ss_dssp ----------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC------CHHHHHHHHHHH
T ss_pred ----------CCCCchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHhhc
Confidence 2234578999999999988877543 58999999999998753110 001111111100
Q ss_pred CceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 210 WTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 210 ~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
...+...+..++|+|++++.++.. ......|+.+++.++..
T Consensus 222 -------~~~p~~r~~~pedvA~~v~fL~s~---~~~~itG~~i~vdGG~~ 262 (265)
T 3lf2_A 222 -------KQIPLGRLGKPIEAARAILFLASP---LSAYTTGSHIDVSGGLS 262 (265)
T ss_dssp -------TTCTTCSCBCHHHHHHHHHHHHSG---GGTTCCSEEEEESSSCC
T ss_pred -------cCCCcCCCcCHHHHHHHHHHHhCc---hhcCcCCCEEEECCCCc
Confidence 012234577899999999988751 12457899999988753
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-19 Score=180.89 Aligned_cols=219 Identities=18% Similarity=0.079 Sum_probs=138.2
Q ss_pred CCCCCCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHH
Q 010005 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 1 m~~~~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (520)
|+....++++||||||+|+||+++++.|+++| ++|++.++.... +. .....+.......++..+.+|++|.+++.+
T Consensus 1 M~m~~l~~k~vlVTGas~gIG~~la~~l~~~G-~~Vv~~~r~~~~-~~--~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~ 76 (319)
T 3ioy_A 1 MSLKDFAGRTAFVTGGANGVGIGLVRQLLNQG-CKVAIADIRQDS-ID--KALATLEAEGSGPEVMGVQLDVASREGFKM 76 (319)
T ss_dssp --CCCCTTCEEEEETTTSTHHHHHHHHHHHTT-CEEEEEESCHHH-HH--HHHHHHHHHTCGGGEEEEECCTTCHHHHHH
T ss_pred CCccCCCCCEEEEcCCchHHHHHHHHHHHHCC-CEEEEEECCHHH-HH--HHHHHHHhcCCCCeEEEEECCCCCHHHHHH
Confidence 44445567899999999999999999999999 699995543210 00 000001001111267889999999998888
Q ss_pred HHc-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHC----------CCCEEEEeeccccc
Q 010005 81 VLE-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC----------KVRRLVYNSTADVV 136 (520)
Q Consensus 81 ~l~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~----------gvkr~V~~SS~~vy 136 (520)
+++ ++|+|||+||.. ....+++..+++|+.|+.++++++... +..++|++||...+
T Consensus 77 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~ 156 (319)
T 3ioy_A 77 AADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAF 156 (319)
T ss_dssp HHHHHHHHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGT
T ss_pred HHHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccc
Confidence 875 579999999972 233566789999999999999988654 24579999999876
Q ss_pred ccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHH----hcCCCCceEEEEecCccccCCCCCc--hHHHHHHhcCCC
Q 010005 137 FDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLF----ANNIDGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGW 210 (520)
Q Consensus 137 g~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~----~~~~~gi~~~ilRp~~vyGp~~~~~--~~~l~~~~~~g~ 210 (520)
.. ......|+.||+..+.+.+. +.+ .|+++++++||.|.++..... .+..........
T Consensus 157 ~~---------------~~~~~~Y~aSKaal~~~~~~la~e~~~-~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~ 220 (319)
T 3ioy_A 157 LA---------------AGSPGIYNTTKFAVRGLSESLHYSLLK-YEIGVSVLCPGLVKSYIYASDDIRPDALKGEVKPV 220 (319)
T ss_dssp CC---------------CSSSHHHHHHHHHHHHHHHHHHHHHGG-GTCEEEEECCCCBC---------------------
T ss_pred cC---------------CCCCHHHHHHHHHHHHHHHHHHHHhhh-cCCEEEEEEcCeEccCcccccccCchhhcccccch
Confidence 31 12346899999955555444 443 689999999999988743211 111110000000
Q ss_pred ceEEecCCCccc-ccccHHHHHHHHHHHHH
Q 010005 211 TKFIIGSGENMS-DFTYVENVAHAHVCAAE 239 (520)
Q Consensus 211 ~~~i~g~g~~~~-~~i~v~Dva~ai~~~~~ 239 (520)
......+..... ..+.++|+|++++.+++
T Consensus 221 ~~~~~~~~~~~~~~~~~pe~vA~~~~~al~ 250 (319)
T 3ioy_A 221 DKTAVERLAGVHEFGMEPDVIGARVIEAMK 250 (319)
T ss_dssp --------CCGGGSSBCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhcCCCHHHHHHHHHHHHH
Confidence 000001111111 22789999999999998
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.8e-19 Score=174.37 Aligned_cols=207 Identities=13% Similarity=0.062 Sum_probs=142.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
++++||||||+|+||+++++.|+++| ++|+++++.... +. .....+.......++..+.+|++|.+++.++++
T Consensus 31 ~~k~vlVTGasggIG~~la~~l~~~G-~~V~~~~r~~~~-~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 106 (279)
T 1xg5_A 31 RDRLALVTGASGGIGAAVARALVQQG-LKVVGCARTVGN-IE--ELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIR 106 (279)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HH--HHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEECChHH-HH--HHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 45899999999999999999999999 599995543210 00 000000000011347789999999998887776
Q ss_pred ----CCCEEEEcccCCC-------CCcchhhHHhhhHHH----HHHHHHHHHHCCC--CEEEEeecccccccCCCCCCCC
Q 010005 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQG----AKNVVTACRECKV--RRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~g----t~~ll~aa~~~gv--kr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|+|||+||... ...+++..+++|+.+ ++++++++++.++ +++|++||...+..
T Consensus 107 ~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~-------- 178 (279)
T 1xg5_A 107 SQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV-------- 178 (279)
T ss_dssp HHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSC--------
T ss_pred HhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhccc--------
Confidence 7999999999721 234567789999999 7778888888876 79999999987621
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcC-----CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANN-----IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~-----~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (520)
. +..+...|+.+|+..|.+.+.++. ..|+++++++|+.+.++... . .....+..... ....
T Consensus 179 ---~--~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~-------~-~~~~~~~~~~~-~~~~ 244 (279)
T 1xg5_A 179 ---L--PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAF-------K-LHDKDPEKAAA-TYEQ 244 (279)
T ss_dssp ---C--SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHH-------H-HTTTCHHHHHH-HHC-
T ss_pred ---C--CCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhhh-------h-hcccChhHHhh-hccc
Confidence 0 223456899999999988776643 36899999999999876310 0 00000000000 0012
Q ss_pred cccccHHHHHHHHHHHHH
Q 010005 222 SDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~ 239 (520)
..+++++|+|++++.++.
T Consensus 245 ~~~~~~~dvA~~i~~l~~ 262 (279)
T 1xg5_A 245 MKCLKPEDVAEAVIYVLS 262 (279)
T ss_dssp --CBCHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHhc
Confidence 347889999999999887
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.8e-19 Score=172.67 Aligned_cols=202 Identities=16% Similarity=0.041 Sum_probs=146.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHh-cCCcEEEEecCCcccccCCCCC-CCCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLE-LGKCIVRVTDSTQSLQLDPSES-NSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~-~g~~~V~~~D~~~~~~l~r~~~-~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
++++||||||+|+||+++++.|++ +| ++|+++++.... ... ...+.. ...++.++.+|++|.+++.++++
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g-~~V~~~~r~~~~----~~~~~~~l~~--~~~~~~~~~~Dl~~~~~~~~~~~~ 75 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFS-GDVVLTARDVTR----GQAAVQQLQA--EGLSPRFHQLDIDDLQSIRALRDF 75 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSS-SEEEEEESSHHH----HHHHHHHHHH--TTCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcC-CeEEEEeCChHH----HHHHHHHHHh--cCCeeEEEECCCCCHHHHHHHHHH
Confidence 468999999999999999999999 89 599995543210 000 000000 12467899999999998888876
Q ss_pred ------CCCEEEEcccCCCC-------CcchhhHHhhhHHHHHHHHHHHHHCC--CCEEEEeecccccccCCC-------
Q 010005 84 ------GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSH------- 141 (520)
Q Consensus 84 ------~~D~Vih~aa~~~~-------~~~~~~~~~~Nv~gt~~ll~aa~~~g--vkr~V~~SS~~vyg~~~~------- 141 (520)
++|+|||+||.... ..+++..+++|+.|+.++++++.... ..++|++||...+.....
T Consensus 76 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~ 155 (276)
T 1wma_A 76 LRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQ 155 (276)
T ss_dssp HHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHH
T ss_pred HHHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHh
Confidence 78999999997211 24567789999999999999998763 249999999888742100
Q ss_pred --CCCCCCCCc-----------------cCCCCCCChHHHHHHHHHHHHHHhcCC-------CCceEEEEecCccccCCC
Q 010005 142 --DIHNGDETL-----------------TCCWKFQDLMCDLKAQAEALVLFANNI-------DGLLTCALRPSNVFGPGD 195 (520)
Q Consensus 142 --~~~~~~E~~-----------------~~~~~p~~~Y~~sK~~~E~~~~~~~~~-------~gi~~~ilRp~~vyGp~~ 195 (520)
...+.+|+. +.+..|.+.|+.||+..|.+++.++.+ .|+++++++||.+.++..
T Consensus 156 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~ 235 (276)
T 1wma_A 156 KFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMA 235 (276)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTT
T ss_pred hccccccchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcC
Confidence 001122221 012235589999999999998877654 589999999999987643
Q ss_pred CCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHH
Q 010005 196 TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 196 ~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~ 239 (520)
+. ..+.+++|+|++++.++.
T Consensus 236 ~~------------------------~~~~~~~~~a~~~~~l~~ 255 (276)
T 1wma_A 236 GP------------------------KATKSPEEGAETPVYLAL 255 (276)
T ss_dssp CT------------------------TCSBCHHHHTHHHHHHHS
T ss_pred Cc------------------------cccCChhHhhhhHhhhhc
Confidence 21 136789999999998886
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.4e-19 Score=173.90 Aligned_cols=220 Identities=14% Similarity=0.110 Sum_probs=156.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
.++|++|||||+|+||++++++|+++| ++|+++|+.. .. ..+.+.+ .++.++.+|++|.+++.++++
T Consensus 7 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~ 75 (270)
T 1yde_A 7 YAGKVVVVTGGGRGIGAGIVRAFVNSG-ARVVICDKDE--------SGGRALEQEL--PGAVFILCDVTQEDDVKTLVSE 75 (270)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHC--TTEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHh--cCCeEEEcCCCCHHHHHHHHHH
Confidence 356899999999999999999999999 5999955432 10 0011111 247889999999998887775
Q ss_pred ------CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHHHHC---CCCEEEEeecccccccCCCCCCCC
Q 010005 84 ------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 ------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa~~~---gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|++||+||... ...+++..+++|+.++.++++++... +.+++|++||...+.
T Consensus 76 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~--------- 146 (270)
T 1yde_A 76 TIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAI--------- 146 (270)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHH---------
T ss_pred HHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccccC---------
Confidence 6899999999732 12345778999999999999998642 246999999986542
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCC-------chHHHHHHhcCCCceEEec
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-------LVPLLVNLAKPGWTKFIIG 216 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~-------~~~~l~~~~~~g~~~~i~g 216 (520)
+..+...|+.+|+..|.+.+.++.+ +|++++++||+.++++.... ....+... ..
T Consensus 147 ------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~-~~-------- 211 (270)
T 1yde_A 147 ------GQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREG-ML-------- 211 (270)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHH-HH--------
T ss_pred ------CCCCCcccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhhhhcccchHHHHHHH-hh--------
Confidence 1123468999999999998887643 68999999999999873110 00001000 00
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHH
Q 010005 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWD 265 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~e 265 (520)
......+...+|+|++++.++.. .....|+.+++.++..+...+
T Consensus 212 -~~p~~r~~~p~dva~~v~~L~s~----~~~itG~~i~vdGG~~~~~~~ 255 (270)
T 1yde_A 212 -AQPLGRMGQPAEVGAAAVFLASE----ANFCTGIELLVTGGAELGYGC 255 (270)
T ss_dssp -TSTTSSCBCHHHHHHHHHHHHHH----CTTCCSCEEEESTTTTSCC--
T ss_pred -cCCCCCCcCHHHHHHHHHHHccc----CCCcCCCEEEECCCeecccCc
Confidence 01223467899999999988762 245678999999987665443
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=7.8e-19 Score=173.29 Aligned_cols=222 Identities=13% Similarity=0.070 Sum_probs=155.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEEecCCCHHHHHHHHc-
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
++|++|||||+|+||++++++|+++| ++|+++++.... ......+.+ ...++..+.+|++|.+++.++++
T Consensus 28 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~------~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 100 (283)
T 1g0o_A 28 EGKVALVTGAGRGIGREMAMELGRRG-CKVIVNYANSTE------SAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEE 100 (283)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHH------HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCchH------HHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHH
Confidence 46899999999999999999999999 599985543210 000000000 12467889999999988877664
Q ss_pred ------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCCCCCCCC
Q 010005 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
++|+|||+||... ...+++..+++|+.|+.++++++... +..++|++||...+..
T Consensus 101 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~---------- 170 (283)
T 1g0o_A 101 AVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAK---------- 170 (283)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCS----------
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhccC----------
Confidence 6899999999721 23566788999999999999999886 5679999999876421
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc-----------hHHHHHHhcCCCceEE
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL-----------VPLLVNLAKPGWTKFI 214 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~-----------~~~l~~~~~~g~~~~i 214 (520)
...+...|+.||+..|.+.+.++.+ +|+++++++|+.+.++..... -+.........
T Consensus 171 ----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 241 (283)
T 1g0o_A 171 ----AVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAV----- 241 (283)
T ss_dssp ----SCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHH-----
T ss_pred ----CCCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhccccccccCHHHHHHHHhh-----
Confidence 0113568999999999998877543 689999999999987631100 01111111110
Q ss_pred ecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.......+.+.+|+|++++.++.. ......|+.+++.++.
T Consensus 242 --~~~p~~r~~~p~dvA~~v~~l~s~---~~~~itG~~i~vdgG~ 281 (283)
T 1g0o_A 242 --QWSPLRRVGLPIDIARVVCFLASN---DGGWVTGKVIGIDGGA 281 (283)
T ss_dssp --HSCTTCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTC
T ss_pred --cCCCCCCCcCHHHHHHHHHHHhCc---cccCcCCCEEEeCCCc
Confidence 011233578899999999988862 1234678999998864
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-19 Score=177.17 Aligned_cols=228 Identities=11% Similarity=-0.004 Sum_probs=162.0
Q ss_pred CCCCCeEEEEcCC--ChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCCCCCCCCCcEEEEecCCCHHHHHHH
Q 010005 5 EAIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDSLSSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 5 ~~~~~~ILVtGat--GfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~-~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
..++|+||||||+ |+||++++++|+++| ++|+++++... ... ...+.+ ..+++.++.+|++|.+++.++
T Consensus 11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G-~~V~~~~r~~~-----~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~ 82 (271)
T 3ek2_A 11 FLDGKRILLTGLLSNRSIAYGIAKACKREG-AELAFTYVGDR-----FKDRITEFAA--EFGSELVFPCDVADDAQIDAL 82 (271)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTT-CEEEEEESSGG-----GHHHHHHHHH--HTTCCCEEECCTTCHHHHHHH
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHHcC-CCEEEEecchh-----hHHHHHHHHH--HcCCcEEEECCCCCHHHHHHH
Confidence 3457999999999 999999999999999 59998654321 000 000001 113478899999999988888
Q ss_pred Hc-------CCCEEEEcccCC------------CCCcchhhHHhhhHHHHHHHHHHHHHCC--CCEEEEeecccccccCC
Q 010005 82 LE-------GASTVFYVDATD------------LNTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGS 140 (520)
Q Consensus 82 l~-------~~D~Vih~aa~~------------~~~~~~~~~~~~Nv~gt~~ll~aa~~~g--vkr~V~~SS~~vyg~~~ 140 (520)
++ ++|++||+||.. ....++...+++|+.++.++++++...- -.++|++||...+.
T Consensus 83 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~--- 159 (271)
T 3ek2_A 83 FASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAER--- 159 (271)
T ss_dssp HHHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTS---
T ss_pred HHHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEecccccc---
Confidence 76 579999999972 2334567789999999999999997652 34899999988762
Q ss_pred CCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch--HHHHHHhcCCCceEEe
Q 010005 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFII 215 (520)
Q Consensus 141 ~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~--~~l~~~~~~g~~~~i~ 215 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+..+...... +..........
T Consensus 160 ------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~----- 222 (271)
T 3ek2_A 160 ------------AIPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGIKSFGKILDFVESNS----- 222 (271)
T ss_dssp ------------BCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CCCHHHHHHHHHHHHHS-----
T ss_pred ------------CCCCccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhcccchHHHHHHHHhcC-----
Confidence 2234678999999999998877643 6899999999999987654322 22333222221
Q ss_pred cCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHH
Q 010005 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFL 267 (520)
Q Consensus 216 g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~ 267 (520)
....+..++|+|++++.++.. ......|+.+++.++..+++.+++
T Consensus 223 ----~~~~~~~pedva~~i~~l~s~---~~~~~tG~~i~vdgG~~~~~~~~~ 267 (271)
T 3ek2_A 223 ----PLKRNVTIEQVGNAGAFLLSD---LASGVTAEVMHVDSGFNAVVGGMA 267 (271)
T ss_dssp ----TTSSCCCHHHHHHHHHHHHSG---GGTTCCSEEEEESTTGGGBCCCC-
T ss_pred ----CcCCCCCHHHHHHHHHHHcCc---ccCCeeeeEEEECCCeeeehhhhh
Confidence 223467799999999988862 124578999999998877766554
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-19 Score=178.16 Aligned_cols=194 Identities=13% Similarity=0.042 Sum_probs=142.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++++|+||||+|+||+++++.|+++| ++|+++|+.... .. .....+.. ...++.++.+|++|.+++.++++
T Consensus 29 l~~k~vlITGasggIG~~la~~L~~~G-~~V~~~~r~~~~-~~--~~~~~l~~--~~~~~~~~~~Dl~~~~~v~~~~~~~ 102 (272)
T 1yb1_A 29 VTGEIVLITGAGHGIGRLTAYEFAKLK-SKLVLWDINKHG-LE--ETAAKCKG--LGAKVHTFVVDCSNREDIYSSAKKV 102 (272)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HH--HHHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEEcCHHH-HH--HHHHHHHh--cCCeEEEEEeeCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 599996543210 00 00000000 12468899999999998887775
Q ss_pred -----CCCEEEEcccCCCC-------CcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~~~~-------~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|+|||+||.... ..++...+++|+.++.++++++ ++.+.+++|++||...+..
T Consensus 103 ~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~--------- 173 (272)
T 1yb1_A 103 KAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVS--------- 173 (272)
T ss_dssp HHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCC---------
T ss_pred HHHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCC---------
Confidence 68999999997321 2345678999999988877766 4567789999999987631
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC------CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI------DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~------~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (520)
..+...|+.+|+..|.+.+.++.+ .|++++++||+.+.++.... . ....
T Consensus 174 ------~~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~~------------~-------~~~~ 228 (272)
T 1yb1_A 174 ------VPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKN------------P-------STSL 228 (272)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTC------------T-------HHHH
T ss_pred ------CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccc------------c-------cccc
Confidence 123468999999999998877643 48999999999998875321 0 0112
Q ss_pred cccccHHHHHHHHHHHHH
Q 010005 222 SDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~ 239 (520)
..+++++|+|++++.+++
T Consensus 229 ~~~~~~~dva~~i~~~~~ 246 (272)
T 1yb1_A 229 GPTLEPEEVVNRLMHGIL 246 (272)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 457889999999999887
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.5e-19 Score=170.73 Aligned_cols=202 Identities=12% Similarity=0.018 Sum_probs=149.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
++|+||||||+|+||++++++|+++| ++|+++|+ ++.. .. .....+.+|++|.+++.++++
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r--------~~~~--~~-----~~~~~~~~D~~~~~~v~~~~~~~~ 69 (241)
T 1dhr_A 6 EARRVLVYGGRGALGSRCVQAFRARN-WWVASIDV--------VENE--EA-----SASVIVKMTDSFTEQADQVTAEVG 69 (241)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEES--------SCCT--TS-----SEEEECCCCSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeC--------Chhh--cc-----CCcEEEEcCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 59999554 3321 11 134677899999988887775
Q ss_pred ------CCCEEEEcccCCC-----C---CcchhhHHhhhHHHHHHHHHHHHHCC--CCEEEEeecccccccCCCCCCCCC
Q 010005 84 ------GASTVFYVDATDL-----N---TDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 ------~~D~Vih~aa~~~-----~---~~~~~~~~~~Nv~gt~~ll~aa~~~g--vkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|++||+||... . ..+++..+++|+.++.++.+++...- -.++|++||...+.
T Consensus 70 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 139 (241)
T 1dhr_A 70 KLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD---------- 139 (241)
T ss_dssp HHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS----------
T ss_pred HHhCCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHcc----------
Confidence 6899999999721 1 13456788999999999999997641 25899999988762
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC-----CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI-----DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
+..+...|+.+|+..|.+.+.++.+ +|+++++++|+.+-.+. ....... ....
T Consensus 140 -----~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~~--------~~~~~~~---------~~~~ 197 (241)
T 1dhr_A 140 -----GTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPM--------NRKSMPE---------ADFS 197 (241)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHH--------HHHHSTT---------SCGG
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCcc--------ccccCcc---------hhhc
Confidence 1234568999999999999988764 46999999999886541 1111111 1223
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.++..+|+|++++.++.. ......|+.+.+.++.
T Consensus 198 ~~~~~~~vA~~v~~l~~~---~~~~~~G~~~~v~g~~ 231 (241)
T 1dhr_A 198 SWTPLEFLVETFHDWITG---NKRPNSGSLIQVVTTD 231 (241)
T ss_dssp GSEEHHHHHHHHHHHHTT---TTCCCTTCEEEEEEET
T ss_pred cCCCHHHHHHHHHHHhcC---CCcCccceEEEEeCCC
Confidence 567789999999988761 1234678888887654
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-19 Score=176.14 Aligned_cols=220 Identities=11% Similarity=0.053 Sum_probs=156.0
Q ss_pred CCCCeEEEEcCC--ChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 6 AIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGat--GfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
+++|+++||||+ |+||+++++.|+++| ++|+++|+... .......+... .+++.++.+|++|.+++.++++
T Consensus 4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G-~~V~~~~r~~~----~~~~~~~l~~~--~~~~~~~~~D~~~~~~v~~~~~ 76 (275)
T 2pd4_A 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQG-ATLAFTYLNES----LEKRVRPIAQE--LNSPYVYELDVSKEEHFKSLYN 76 (275)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTT-CEEEEEESSTT----THHHHHHHHHH--TTCCCEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCC-CEEEEEeCCHH----HHHHHHHHHHh--cCCcEEEEcCCCCHHHHHHHHH
Confidence 457899999999 999999999999999 59999654321 00000011110 1236789999999998887775
Q ss_pred -------CCCEEEEcccCCC-----------CCcchhhHHhhhHHHHHHHHHHHHHCC--CCEEEEeecccccccCCCCC
Q 010005 84 -------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 84 -------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~ll~aa~~~g--vkr~V~~SS~~vyg~~~~~~ 143 (520)
++|++||+||... ...+++..+++|+.++.++++++...- -.++|++||...+.
T Consensus 77 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~------ 150 (275)
T 2pd4_A 77 SVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK------ 150 (275)
T ss_dssp HHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS------
T ss_pred HHHHHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcC------
Confidence 5799999999732 123567789999999999999998761 25999999977642
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc--hHHHHHHhcCCCceEEecCC
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~--~~~l~~~~~~g~~~~i~g~g 218 (520)
+..+...|+.||+..+.+.+.++.+ +|+++++++||.+.++..... .+..........
T Consensus 151 ---------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~-------- 213 (275)
T 2pd4_A 151 ---------YMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINA-------- 213 (275)
T ss_dssp ---------BCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHS--------
T ss_pred ---------CCCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhccccHHHHHHHHhcC--------
Confidence 1234568999999999998877543 589999999999998754321 122222222111
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
....+.+++|+|++++.++.. ......|+.+++.++.
T Consensus 214 -p~~~~~~p~dva~~~~~l~s~---~~~~~tG~~~~vdgg~ 250 (275)
T 2pd4_A 214 -PLRKNVSLEEVGNAGMYLLSS---LSSGVSGEVHFVDAGY 250 (275)
T ss_dssp -TTSSCCCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTG
T ss_pred -CcCCCCCHHHHHHHHHHHhCc---cccCCCCCEEEECCCc
Confidence 112356799999999988851 1234678899998864
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.3e-19 Score=175.76 Aligned_cols=220 Identities=12% Similarity=0.038 Sum_probs=158.7
Q ss_pred CCCCeEEEEcCCCh--hHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 6 AIPRTCVVLNGRGF--VGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGatGf--IG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
.++|+||||||+|+ ||+++++.|+++| ++|++.|+... ......+.+ ...++.++.+|++|.+++.++++
T Consensus 24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G-~~V~~~~r~~~-----~~~~~~l~~--~~~~~~~~~~Dl~~~~~v~~~~~ 95 (280)
T 3nrc_A 24 LAGKKILITGLLSNKSIAYGIAKAMHREG-AELAFTYVGQF-----KDRVEKLCA--EFNPAAVLPCDVISDQEIKDLFV 95 (280)
T ss_dssp TTTCEEEECCCCSTTCHHHHHHHHHHHTT-CEEEEEECTTC-----HHHHHHHHG--GGCCSEEEECCTTCHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHcC-CEEEEeeCchH-----HHHHHHHHH--hcCCceEEEeecCCHHHHHHHHH
Confidence 34689999999988 9999999999999 59999554320 000001111 11357899999999998887775
Q ss_pred -------CCCEEEEcccCC------------CCCcchhhHHhhhHHHHHHHHHHHHHC---CCCEEEEeecccccccCCC
Q 010005 84 -------GASTVFYVDATD------------LNTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSH 141 (520)
Q Consensus 84 -------~~D~Vih~aa~~------------~~~~~~~~~~~~Nv~gt~~ll~aa~~~---gvkr~V~~SS~~vyg~~~~ 141 (520)
++|+|||+||.. ....++...+++|+.++.++++++... +..++|++||...+.
T Consensus 96 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~---- 171 (280)
T 3nrc_A 96 ELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEK---- 171 (280)
T ss_dssp HHHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTS----
T ss_pred HHHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecccccc----
Confidence 479999999973 334456678999999999999998754 346999999988762
Q ss_pred CCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc--hHHHHHHhcCCCceEEec
Q 010005 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIG 216 (520)
Q Consensus 142 ~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~--~~~l~~~~~~g~~~~i~g 216 (520)
+..+...|+.||+..|.+.+.++.+ +|+++.+++|+.+.++..... .+..........
T Consensus 172 -----------~~~~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~------ 234 (280)
T 3nrc_A 172 -----------AMPSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGISNFKKMLDYNAMVS------ 234 (280)
T ss_dssp -----------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGCTTHHHHHHHHHHHS------
T ss_pred -----------CCCCchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcCcchHHHHHHHHhcC------
Confidence 2234578999999999998876543 689999999999998754321 122322222211
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
....+..++|+|++++.++.. ......|+++++.++..
T Consensus 235 ---p~~~~~~pedvA~~v~~l~s~---~~~~~tG~~i~vdgG~~ 272 (280)
T 3nrc_A 235 ---PLKKNVDIMEVGNTVAFLCSD---MATGITGEVVHVDAGYH 272 (280)
T ss_dssp ---TTCSCCCHHHHHHHHHHTTSG---GGTTCCSCEEEESTTGG
T ss_pred ---CCCCCCCHHHHHHHHHHHhCc---ccCCcCCcEEEECCCcc
Confidence 123467799999999987751 12447899999998764
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-19 Score=173.02 Aligned_cols=219 Identities=12% Similarity=0.061 Sum_probs=152.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecC--CCHHHHHHHHc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV--RDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl--~d~~~l~~~l~ 83 (520)
.++|++|||||+|.||++++++|+++| ++|+++|+.... +.. ....+.. ....++.++.+|+ +|.+++.++++
T Consensus 10 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~-~~~--~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~ 84 (252)
T 3f1l_A 10 LNDRIILVTGASDGIGREAAMTYARYG-ATVILLGRNEEK-LRQ--VASHINE-ETGRQPQWFILDLLTCTSENCQQLAQ 84 (252)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHH--HHHHHHH-HHSCCCEEEECCTTTCCHHHHHHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHH-HHH--HHHHHHh-hcCCCceEEEEecccCCHHHHHHHHH
Confidence 346899999999999999999999999 599995543210 000 0000000 0113678899999 88888777765
Q ss_pred -------CCCEEEEcccCC--------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCC
Q 010005 84 -------GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 84 -------~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
++|++||+||.. ....+++..+++|+.|+.++.+++ ++.+..++|++||...+.
T Consensus 85 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~------- 157 (252)
T 3f1l_A 85 RIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQ------- 157 (252)
T ss_dssp HHHHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTS-------
T ss_pred HHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhcc-------
Confidence 689999999962 122345678999999999999998 556677999999987652
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCCCC--ceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccc
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDG--LLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g--i~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
+..+...|+.||+..+.+.+.++.+.+ +++.++.|+.+..+. ....... ....
T Consensus 158 --------~~~~~~~Y~asK~a~~~l~~~la~e~~~~irvn~v~PG~v~t~~--------~~~~~~~---------~~~~ 212 (252)
T 3f1l_A 158 --------GRANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAM--------RASAFPT---------EDPQ 212 (252)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECCSBSSHH--------HHHHCTT---------CCGG
T ss_pred --------CCCCCchhHHHHHHHHHHHHHHHHHhcCCcEEEEEecCcccCch--------hhhhCCc---------cchh
Confidence 223456899999999999887765432 899999999887541 1111111 1223
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHH
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFW 264 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~ 264 (520)
.+..++|+|.+++.++.. ......|+.+++.++...++.
T Consensus 213 ~~~~p~dva~~~~~L~s~---~~~~itG~~i~vdgG~~~~~~ 251 (252)
T 3f1l_A 213 KLKTPADIMPLYLWLMGD---DSRRKTGMTFDAQPGRKPGIS 251 (252)
T ss_dssp GSBCTGGGHHHHHHHHSG---GGTTCCSCEEESSCC------
T ss_pred ccCCHHHHHHHHHHHcCc---cccCCCCCEEEeCCCcCCCCC
Confidence 577899999999988761 124578999999998766654
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.7e-18 Score=169.88 Aligned_cols=232 Identities=16% Similarity=0.101 Sum_probs=158.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccc-c---CCCCCCCCCCC---C--CCCCCcEEEEecCCCHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQ-L---DPSESNSLLPD---S--LSSGRAEYHQVDVRDIS 76 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~-l---~r~~~~~~l~~---~--~~~~~v~~~~~Dl~d~~ 76 (520)
.++|++|||||+|.||+++++.|+++| ++|+++|+..... + .++.. .+.+ . ....++..+.+|++|.+
T Consensus 44 l~gk~~lVTGas~GIG~aia~~la~~G-~~Vv~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dv~d~~ 120 (317)
T 3oec_A 44 LQGKVAFITGAARGQGRTHAVRLAQDG-ADIVAIDLCRQQPNLDYAQGSPE--ELKETVRLVEEQGRRIIARQADVRDLA 120 (317)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEECCCCCTTCCSCCCCHH--HHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CeEEEEecccccccccccccCHH--HHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 346899999999999999999999999 5999977642100 0 00000 0000 0 01346889999999999
Q ss_pred HHHHHHc-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CC-CCEEEEeecccccc
Q 010005 77 QIKKVLE-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVF 137 (520)
Q Consensus 77 ~l~~~l~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~g-vkr~V~~SS~~vyg 137 (520)
++.++++ ++|++||+||.. ....+++..+++|+.|+.++++++.. .+ -.++|++||...+.
T Consensus 121 ~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~ 200 (317)
T 3oec_A 121 SLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLR 200 (317)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSS
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcC
Confidence 8888776 689999999972 23356678899999999999998843 33 45899999988762
Q ss_pred cCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCC--c-
Q 010005 138 DGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGW--T- 211 (520)
Q Consensus 138 ~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~--~- 211 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+.++.... ........... +
T Consensus 201 ---------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~--~~~~~~~~~~~~~~~ 263 (317)
T 3oec_A 201 ---------------GAPGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALN--EKLLKMFLPHLENPT 263 (317)
T ss_dssp ---------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHC--HHHHHHHCTTCSSCC
T ss_pred ---------------CCCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCccccc--hhhhhhhhhhccccc
Confidence 1234568999999999998877654 58999999999999864211 00011111000 0
Q ss_pred ----eEEecC-CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 212 ----KFIIGS-GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 212 ----~~i~g~-g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
...... ......|++++|+|++++.++.. ......|+++++.++..
T Consensus 264 ~~~~~~~~~~~~~~p~~~~~pedvA~av~fL~s~---~a~~itG~~i~vdGG~~ 314 (317)
T 3oec_A 264 REDAAELFSQLTLLPIPWVEPEDVSNAVAWLASD---EARYIHGAAIPVDGGQL 314 (317)
T ss_dssp HHHHHHHHTTTCSSSSSSBCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTGG
T ss_pred hhHHHHHHhhhccCCCCCCCHHHHHHHHHHHcCC---cccCCCCCEEEECcchh
Confidence 000000 11115788999999999987751 12457899999998754
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=170.06 Aligned_cols=223 Identities=13% Similarity=0.100 Sum_probs=157.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++|++|||||+|.||++++++|+++| ++|++.+.......... ...+.. ...++.++.+|++|.+++.++++
T Consensus 16 l~~k~~lVTGas~gIG~aia~~l~~~G-~~V~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~ 90 (270)
T 3is3_A 16 LDGKVALVTGSGRGIGAAVAVHLGRLG-AKVVVNYANSTKDAEKV--VSEIKA--LGSDAIAIKADIRQVPEIVKLFDQA 90 (270)
T ss_dssp CTTCEEEESCTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHH--HHHHHH--TTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHH--HHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 58888544221000000 000000 13468899999999998887775
Q ss_pred -----CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHCCCC--EEEEeecccccccCCCCCCCCCCC
Q 010005 84 -----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRECKVR--RLVYNSTADVVFDGSHDIHNGDET 149 (520)
Q Consensus 84 -----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk--r~V~~SS~~vyg~~~~~~~~~~E~ 149 (520)
++|++||+||.. ....+++..+++|+.|+.++.+++...-.+ ++|++||......
T Consensus 91 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~----------- 159 (270)
T 3is3_A 91 VAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKDF----------- 159 (270)
T ss_dssp HHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTTC-----------
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhccC-----------
Confidence 689999999972 134567789999999999999999876433 9999999763200
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCC------------chHHHHHHhcCCCceEE
Q 010005 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ------------LVPLLVNLAKPGWTKFI 214 (520)
Q Consensus 150 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~------------~~~~l~~~~~~g~~~~i 214 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+.++.... ...........
T Consensus 160 ---~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 230 (270)
T 3is3_A 160 ---SVPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAH------ 230 (270)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHH------
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHHHh------
Confidence 2234678999999999998877654 68999999999999874210 01111111111
Q ss_pred ecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..+...+.+++|+|++++.++.. ......|+.+++.++.
T Consensus 231 ---~~p~~r~~~p~dvA~~v~~L~s~---~~~~itG~~i~vdGG~ 269 (270)
T 3is3_A 231 ---ASPLHRNGWPQDVANVVGFLVSK---EGEWVNGKVLTLDGGA 269 (270)
T ss_dssp ---HSTTCSCBCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTC
T ss_pred ---cCCCCCCCCHHHHHHHHHHHcCC---ccCCccCcEEEeCCCC
Confidence 12334567899999999988751 1245679999998864
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.3e-18 Score=167.51 Aligned_cols=234 Identities=14% Similarity=0.089 Sum_probs=160.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccc--------cCCCCCC-CCCCCC--CCCCCcEEEEecCCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQ--------LDPSESN-SLLPDS--LSSGRAEYHQVDVRD 74 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~--------l~r~~~~-~~l~~~--~~~~~v~~~~~Dl~d 74 (520)
.++|++|||||+|.||+++++.|.++| ++|+++|+..... ..|.... ....+. ....++..+.+|++|
T Consensus 9 l~~k~~lVTGas~gIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~ 87 (286)
T 3uve_A 9 VEGKVAFVTGAARGQGRSHAVRLAQEG-ADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRD 87 (286)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTC
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCC
Confidence 456899999999999999999999999 5999977652100 0011100 000000 013468899999999
Q ss_pred HHHHHHHHc-------CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHHHHC----C-CCEEEEeeccc
Q 010005 75 ISQIKKVLE-------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTAD 134 (520)
Q Consensus 75 ~~~l~~~l~-------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa~~~----g-vkr~V~~SS~~ 134 (520)
.+++.++++ ++|++||+||... ...+++..+++|+.++.++++++... + -.++|++||..
T Consensus 88 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~ 167 (286)
T 3uve_A 88 YDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVG 167 (286)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGG
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECchh
Confidence 998888775 6899999999721 23456779999999999999987543 2 45899999988
Q ss_pred ccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcC---
Q 010005 135 VVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKP--- 208 (520)
Q Consensus 135 vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~--- 208 (520)
.+. +..+...|+.||+..+.+.+.++.+ +|+++.+++||.+..+....... ......
T Consensus 168 ~~~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~ 230 (286)
T 3uve_A 168 GLK---------------AYPHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGT--FKMFRPDLE 230 (286)
T ss_dssp GTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTSSHHH--HHHHCTTSS
T ss_pred hcc---------------CCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCcccccch--hhhcccccc
Confidence 762 2234568999999999988877554 68999999999999886432110 011110
Q ss_pred -CCc-----eEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 209 -GWT-----KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 209 -g~~-----~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
..+ ........+ ..+.+++|+|++++.++.. ......|+++++.++..+
T Consensus 231 ~~~~~~~~~~~~~~~~~p-~r~~~p~dvA~~v~fL~s~---~a~~itG~~i~vdGG~~l 285 (286)
T 3uve_A 231 NPGPDDMAPICQMFHTLP-IPWVEPIDISNAVLFFASD---EARYITGVTLPIDAGSCL 285 (286)
T ss_dssp SCCHHHHHHHHHTTCSSS-CSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGGG
T ss_pred ccchhhHHHHHHhhhccC-CCcCCHHHHHHHHHHHcCc---cccCCcCCEEeECCcccc
Confidence 000 000011112 4678999999999988851 124578999999987543
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-19 Score=178.44 Aligned_cols=205 Identities=16% Similarity=0.071 Sum_probs=142.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
++++||||||+|+||+++++.|+++| ++|+++|+.. ... ...+.+ ...++.++.+|++|.+++.++++
T Consensus 30 ~gk~vlVTGas~gIG~~la~~l~~~G-~~V~~~~r~~--------~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~ 100 (301)
T 3tjr_A 30 DGRAAVVTGGASGIGLATATEFARRG-ARLVLSDVDQ--------PALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLAD 100 (301)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCH--------HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHH
Confidence 45799999999999999999999999 6999955432 210 000000 13468899999999998888776
Q ss_pred -------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CC-CCEEEEeecccccccCCCCCC
Q 010005 84 -------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 84 -------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~g-vkr~V~~SS~~vyg~~~~~~~ 144 (520)
++|+|||+||.. ....++...+++|+.|+.++++++.. .+ ..++|++||...+.
T Consensus 101 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~------- 173 (301)
T 3tjr_A 101 EAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLV------- 173 (301)
T ss_dssp HHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS-------
T ss_pred HHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcC-------
Confidence 689999999972 23345678999999999999999743 34 46999999988762
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHH-----hcCCCceEEec
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNL-----AKPGWTKFIIG 216 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~-----~~~g~~~~i~g 216 (520)
+..+...|+.||+..|.+.+.++.+ .|+++++++||.+..+.. ...... .....+....+
T Consensus 174 --------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~----~~~~~~~~~~~~~~~~~~~~~~ 241 (301)
T 3tjr_A 174 --------PNAGLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKLV----SNSERIRGADYGMSATPEGAFG 241 (301)
T ss_dssp --------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSSHH----HHHHHHC---------------
T ss_pred --------CCCCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCccccccc----cccccccchhhccccChhhhcc
Confidence 2234568999999999887776543 589999999999986531 111100 01111112223
Q ss_pred CCCcccccccHHHHHHHHHHHHH
Q 010005 217 SGENMSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~ 239 (520)
......++++++|+|++++.+++
T Consensus 242 ~~~~~~~~~~pedvA~~i~~~l~ 264 (301)
T 3tjr_A 242 PLPTQDESVSADDVARLTADAIL 264 (301)
T ss_dssp -------CCCHHHHHHHHHHHHH
T ss_pred ccccccCCCCHHHHHHHHHHHHh
Confidence 33445678999999999999998
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-18 Score=168.62 Aligned_cols=201 Identities=9% Similarity=0.018 Sum_probs=135.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHH
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
..+++++|||||+|.||+++++.|.++| ++|+++|+. ..+. ...+.+ ...++.++.+|++|.+++.++
T Consensus 4 ~~~~k~vlVTGas~GIG~aia~~l~~~G-~~V~~~~r~--------~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 74 (252)
T 3h7a_A 4 TPRNATVAVIGAGDYIGAEIAKKFAAEG-FTVFAGRRN--------GEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAF 74 (252)
T ss_dssp -CCSCEEEEECCSSHHHHHHHHHHHHTT-CEEEEEESS--------GGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCC--------HHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHH
Confidence 3457899999999999999999999999 599995543 2210 000000 124678999999999998888
Q ss_pred Hc------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCC
Q 010005 82 LE------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 82 l~------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
++ ++|++||+||.. ....+++..+++|+.|+.++.+++ ++.+..++|++||...+.
T Consensus 75 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------- 147 (252)
T 3h7a_A 75 LNAADAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLR------- 147 (252)
T ss_dssp HHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTC-------
T ss_pred HHHHHhhCCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcC-------
Confidence 86 679999999972 233456788999999999998887 445567999999987752
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceE-EEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCc
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLT-CALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~-~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~ 220 (520)
+..+...|+.||+..+.+.+.++.+ +|+++ .++.||.+..+......+.... .......
T Consensus 148 --------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~~~~~~~~~---------~~~~~~~ 210 (252)
T 3h7a_A 148 --------GGSGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRERREQMFG---------KDALANP 210 (252)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC---------------------------------
T ss_pred --------CCCCCccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhhccchhhhh---------hhhhcCC
Confidence 2234568999999999988877543 58999 8999999887644322221111 1111223
Q ss_pred ccccccHHHHHHHHHHHHH
Q 010005 221 MSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~ 239 (520)
.. +..++|+|++++.++.
T Consensus 211 ~~-~~~pedvA~~~~~l~s 228 (252)
T 3h7a_A 211 DL-LMPPAAVAGAYWQLYQ 228 (252)
T ss_dssp ----CCHHHHHHHHHHHHH
T ss_pred cc-CCCHHHHHHHHHHHHh
Confidence 34 8899999999999987
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=172.32 Aligned_cols=220 Identities=12% Similarity=0.038 Sum_probs=160.2
Q ss_pred CCCCeEEEEcCCC--hhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC-CCCCcEEEEecCCCHHHHHHH
Q 010005 6 AIPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL-SSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 6 ~~~~~ILVtGatG--fIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~-~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
.++|++|||||+| .||+++++.|+++| ++|++.|+.. ... ...+.. ....+..+.+|++|.+++.++
T Consensus 28 l~~k~vlVTGasg~~GIG~~ia~~la~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 98 (296)
T 3k31_A 28 MEGKKGVIIGVANDKSLAWGIAKAVCAQG-AEVALTYLSE--------TFKKRVDPLAESLGVKLTVPCDVSDAESVDNM 98 (296)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHHTT-CEEEEEESSG--------GGHHHHHHHHHHHTCCEEEECCTTCHHHHHHH
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHHCC-CEEEEEeCCh--------HHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHH
Confidence 3468999999998 99999999999999 5999965432 100 000000 013467899999999988887
Q ss_pred Hc-------CCCEEEEcccCC-----------CCCcchhhHHhhhHHHHHHHHHHHHHCC--CCEEEEeecccccccCCC
Q 010005 82 LE-------GASTVFYVDATD-----------LNTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSH 141 (520)
Q Consensus 82 l~-------~~D~Vih~aa~~-----------~~~~~~~~~~~~Nv~gt~~ll~aa~~~g--vkr~V~~SS~~vyg~~~~ 141 (520)
++ ++|++||+||.. ....++...+++|+.++.++++++...- -.++|++||...+.
T Consensus 99 ~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~---- 174 (296)
T 3k31_A 99 FKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEK---- 174 (296)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS----
T ss_pred HHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhcc----
Confidence 75 689999999973 2234667899999999999999997753 34899999988752
Q ss_pred CCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchH--HHHHHhcCCCceEEec
Q 010005 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP--LLVNLAKPGWTKFIIG 216 (520)
Q Consensus 142 ~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~--~l~~~~~~g~~~~i~g 216 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+.++....... ..........
T Consensus 175 -----------~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~------ 237 (296)
T 3k31_A 175 -----------VVPHYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGISDFHYILTWNKYNS------ 237 (296)
T ss_dssp -----------CCTTTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCSCHHHHHHHHHHHHHS------
T ss_pred -----------CCCCchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhcccchHHHHHHHHhcC------
Confidence 2234578999999999998877543 58999999999999986554321 2222222211
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
....+..++|+|++++.++.. ......|+++++.++..+
T Consensus 238 ---p~~r~~~pedvA~~v~fL~s~---~a~~itG~~i~vdGG~~~ 276 (296)
T 3k31_A 238 ---PLRRNTTLDDVGGAALYLLSD---LGRGTTGETVHVDCGYHV 276 (296)
T ss_dssp ---TTSSCCCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGGG
T ss_pred ---CCCCCCCHHHHHHHHHHHcCC---ccCCccCCEEEECCCccc
Confidence 123466799999999988862 124578999999987643
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-18 Score=169.24 Aligned_cols=234 Identities=13% Similarity=0.051 Sum_probs=159.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccc----cCCCCCC-CCCCCC--CCCCCcEEEEecCCCHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQ----LDPSESN-SLLPDS--LSSGRAEYHQVDVRDISQI 78 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~----l~r~~~~-~~l~~~--~~~~~v~~~~~Dl~d~~~l 78 (520)
.+++++|||||+|.||+++++.|+++| ++|+++|+..... ..|+... ....+. ....++..+.+|++|.+++
T Consensus 26 l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 104 (299)
T 3t7c_A 26 VEGKVAFITGAARGQGRSHAITLAREG-ADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAM 104 (299)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHH
Confidence 456899999999999999999999999 6999977642100 0011110 000000 0134688999999999988
Q ss_pred HHHHc-------CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHHHHC-----CCCEEEEeeccccccc
Q 010005 79 KKVLE-------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC-----KVRRLVYNSTADVVFD 138 (520)
Q Consensus 79 ~~~l~-------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa~~~-----gvkr~V~~SS~~vyg~ 138 (520)
.++++ ++|++||+||... ...+++..+++|+.|+.++.+++... +..++|++||...+.
T Consensus 105 ~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~~- 183 (299)
T 3t7c_A 105 QAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLR- 183 (299)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGTS-
T ss_pred HHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhcc-
Confidence 87775 6899999999721 23456789999999999999987543 356999999988762
Q ss_pred CCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCC---Cce
Q 010005 139 GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPG---WTK 212 (520)
Q Consensus 139 ~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g---~~~ 212 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+.++....... ....... ...
T Consensus 184 --------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~~~~~ 247 (299)
T 3t7c_A 184 --------------GAENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPT--YRMFRPDLENPTV 247 (299)
T ss_dssp --------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHH--HHHHCTTSSSCCH
T ss_pred --------------CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccccccch--hhhhhhhhccchh
Confidence 2234568999999999988877544 58999999999999886432111 0001000 000
Q ss_pred E------EecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 213 F------IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 213 ~------i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
. ....... ..+..++|+|++++.++.. ......|+.+++.++..+
T Consensus 248 ~~~~~~~~~~~~~p-~r~~~pedvA~~v~fL~s~---~a~~itG~~i~vdGG~~l 298 (299)
T 3t7c_A 248 EDFQVASRQMHVLP-IPYVEPADISNAILFLVSD---DARYITGVSLPVDGGALL 298 (299)
T ss_dssp HHHHHHHHHHSSSS-CSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGGG
T ss_pred hHHHHHhhhhcccC-cCCCCHHHHHHHHHHHhCc---ccccCcCCEEeeCCCccc
Confidence 0 0001111 3577899999999988851 123577999999987543
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.8e-19 Score=170.92 Aligned_cols=193 Identities=13% Similarity=0.075 Sum_probs=138.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++++||||||+|+||++++++|+++| ++|+++|+ +..+. .+.+.+ ...++.++.+|++|.+++.+++
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G-~~V~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 97 (262)
T 3rkr_A 27 LSGQVAVVTGASRGIGAAIARKLGSLG-ARVVLTAR--------DVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFA 97 (262)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEES--------CHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEEC--------CHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHH
Confidence 346899999999999999999999999 58999554 32210 000000 1246788999999999888777
Q ss_pred c-------CCCEEEEcccCC--------CCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCC
Q 010005 83 E-------GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~ 143 (520)
+ ++|+|||+||.. ....++...+++|+.|+.++++++. +.+..++|++||...+.
T Consensus 98 ~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------ 171 (262)
T 3rkr_A 98 TGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKN------ 171 (262)
T ss_dssp HHHHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSC------
T ss_pred HHHHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcC------
Confidence 5 489999999971 2234567799999999999999864 35677999999988752
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCc
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~ 220 (520)
+..+...|+.+|+..|.+.+.++.+ .|+++.+++||.+..+...... ....
T Consensus 172 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-----------------~~~~ 225 (262)
T 3rkr_A 172 ---------PVADGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGVGLS-----------------AKKS 225 (262)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC------------------------------
T ss_pred ---------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCcccccc-----------------cccc
Confidence 2234578999999999998877643 6899999999998765321110 0112
Q ss_pred ccccccHHHHHHHHHHHHH
Q 010005 221 MSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~ 239 (520)
...++..+|+|++++.++.
T Consensus 226 ~~~~~~p~dvA~~v~~l~s 244 (262)
T 3rkr_A 226 ALGAIEPDDIADVVALLAT 244 (262)
T ss_dssp ---CCCHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHHhc
Confidence 3456789999999998887
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.6e-19 Score=168.30 Aligned_cols=190 Identities=16% Similarity=0.100 Sum_probs=136.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC-
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA- 85 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~- 85 (520)
||+||||||+|.||++++++|+++| ++|+++|+. ..+ ....+.+ ..++.++.+|++|.+++.++++.+
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~--------~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~ 70 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEG-KATYLTGRS--------ESKLSTVTNCL-SNNVGYRARDLASHQEVEQLFEQLD 70 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTT-CCEEEEESC--------HHHHHHHHHTC-SSCCCEEECCTTCHHHHHHHHHSCS
T ss_pred CCEEEEecCCchHHHHHHHHHHHCC-CEEEEEeCC--------HHHHHHHHHHH-hhccCeEeecCCCHHHHHHHHHHHh
Confidence 3689999999999999999999999 589995543 221 0011111 346789999999999999999764
Q ss_pred ---CEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHCCC---CEEEEeecccccccCCCCCCCCCCCccC
Q 010005 86 ---STVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRECKV---RRLVYNSTADVVFDGSHDIHNGDETLTC 152 (520)
Q Consensus 86 ---D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~gv---kr~V~~SS~~vyg~~~~~~~~~~E~~~~ 152 (520)
|+|||+||.. ....+++..+++|+.|+.++++++...-. .++|++||...+.
T Consensus 71 ~~~d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~--------------- 135 (230)
T 3guy_A 71 SIPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQ--------------- 135 (230)
T ss_dssp SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTS---------------
T ss_pred hcCCEEEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCC---------------
Confidence 8999999972 23345677899999999999999876422 2999999988762
Q ss_pred CCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHH
Q 010005 153 CWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVEN 229 (520)
Q Consensus 153 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~D 229 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+..+..... ........+.+++|
T Consensus 136 ~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-----------------~~~~~~~~~~~~~d 198 (230)
T 3guy_A 136 PKAQESTYCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWETS-----------------GKSLDTSSFMSAED 198 (230)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC---------------------------------CCCHHH
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChHHHhc-----------------CCCCCcccCCCHHH
Confidence 2234578999999999998877544 589999999999876532110 01112456788999
Q ss_pred HHHHHHHHHH
Q 010005 230 VAHAHVCAAE 239 (520)
Q Consensus 230 va~ai~~~~~ 239 (520)
+|++++.++.
T Consensus 199 vA~~i~~l~~ 208 (230)
T 3guy_A 199 AALMIHGALA 208 (230)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHh
Confidence 9999998775
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=172.09 Aligned_cols=220 Identities=14% Similarity=0.135 Sum_probs=154.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCC--cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~--~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
++|++|||||+|.||+++++.|+++|. .+|++.++.... +. .....+.......++..+.+|++|.+++.++++
T Consensus 32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~-~~--~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 108 (287)
T 3rku_A 32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEK-LE--ELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIEN 108 (287)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHH-HH--HHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHT
T ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHH-HH--HHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 468999999999999999999999983 288885443210 00 000001011113467889999999999998886
Q ss_pred ------CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCC
Q 010005 84 ------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 ------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|++||+||... ...+++..+++|+.|+.++++++ ++.+..++|++||...+.
T Consensus 109 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~-------- 180 (287)
T 3rku_A 109 LPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRD-------- 180 (287)
T ss_dssp SCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS--------
T ss_pred HHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcC--------
Confidence 4799999999621 23456789999999999999998 455667999999987752
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCC----CchHHHHHHhcCCCceEEecCC
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT----QLVPLLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~----~~~~~l~~~~~~g~~~~i~g~g 218 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+..+... .............
T Consensus 181 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~--------- 244 (287)
T 3rku_A 181 -------AYPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLVRYRGNEEQAKNVYKDT--------- 244 (287)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHHHHTTTCHHHHHHHHTTS---------
T ss_pred -------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCccccccccCcHHHHHHhhccc---------
Confidence 2234578999999999998877654 6899999999999876310 0011111111111
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
..+.++|+|++++.++.. ......|+++.+.++++
T Consensus 245 ----~p~~pedvA~~v~~l~s~---~~~~i~g~~i~v~~g~~ 279 (287)
T 3rku_A 245 ----TPLMADDVADLIVYATSR---KQNTVIADTLIFPTNQA 279 (287)
T ss_dssp ----CCEEHHHHHHHHHHHHTS---CTTEEEEEEEEEETTEE
T ss_pred ----CCCCHHHHHHHHHHHhCC---CCCeEecceEEeeCCCC
Confidence 123799999999988872 12345678888887664
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.1e-19 Score=172.14 Aligned_cols=217 Identities=14% Similarity=0.109 Sum_probs=151.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCC--CCCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDS--LSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~--~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
+++++|||||+|.||++++++|+++| ++|++.+. |+... ..+.+. ....++..+.+|++|.+++.++++
T Consensus 26 ~~k~~lVTGas~GIG~aia~~la~~G-~~Vv~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 97 (267)
T 3u5t_A 26 TNKVAIVTGASRGIGAAIAARLASDG-FTVVINYA-------GKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFA 97 (267)
T ss_dssp -CCEEEEESCSSHHHHHHHHHHHHHT-CEEEEEES-------SCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEcC-------CCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 35789999999999999999999999 58887432 22110 000000 012467889999999998888775
Q ss_pred -------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHCC--CCEEEEeecccccccCCCCCCCCC
Q 010005 84 -------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~g--vkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|++||+||.. ....+++..+++|+.|+.++++++...- -.++|++||...+.
T Consensus 98 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 167 (267)
T 3u5t_A 98 TAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGL---------- 167 (267)
T ss_dssp HHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHH----------
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhcc----------
Confidence 689999999972 1223467788899999999999987642 24899999987753
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc-hHHHHHHhcCCCceEEecCCCcccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL-VPLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~-~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.++.||.+..+..... .+...... ....+...
T Consensus 168 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~---------~~~~p~~r 233 (267)
T 3u5t_A 168 -----LHPSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLEGKSDEVRDRF---------AKLAPLER 233 (267)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC-----------CHHHH---------HTSSTTCS
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCccccccCCHHHHHHH---------HhcCCCCC
Confidence 1223568999999999998877654 589999999999987643211 01111111 12233446
Q ss_pred cccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
+..++|+|++++.++.. ......|+.+++.++
T Consensus 234 ~~~pedvA~~v~~L~s~---~~~~itG~~i~vdGG 265 (267)
T 3u5t_A 234 LGTPQDIAGAVAFLAGP---DGAWVNGQVLRANGG 265 (267)
T ss_dssp CBCHHHHHHHHHHHHST---TTTTCCSEEEEESSS
T ss_pred CcCHHHHHHHHHHHhCc---cccCccCCEEEeCCC
Confidence 77899999999988751 123468899999875
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.78 E-value=8.3e-18 Score=165.36 Aligned_cols=232 Identities=16% Similarity=0.101 Sum_probs=159.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccc--c---CCCCCCCCCCC---C--CCCCCcEEEEecCCCH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQ--L---DPSESNSLLPD---S--LSSGRAEYHQVDVRDI 75 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~--l---~r~~~~~~l~~---~--~~~~~v~~~~~Dl~d~ 75 (520)
.+++++|||||+|.||++++++|+++| ++|+++|+..... . .++.. .+.+ . ....++..+.+|++|.
T Consensus 9 l~~k~~lVTGas~GIG~a~a~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~ 85 (277)
T 3tsc_A 9 LEGRVAFITGAARGQGRAHAVRMAAEG-ADIIAVDIAGKLPSCVPYDPASPD--DLSETVRLVEAANRRIVAAVVDTRDF 85 (277)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCCTTCCSCCCCHH--HHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHcC-CEEEEEeccccccccccccccCHH--HHHHHHHHHHhcCCeEEEEECCCCCH
Confidence 456899999999999999999999999 5999977632100 0 00110 0000 0 0134688899999999
Q ss_pred HHHHHHHc-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CC-CCEEEEeeccccc
Q 010005 76 SQIKKVLE-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVV 136 (520)
Q Consensus 76 ~~l~~~l~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~g-vkr~V~~SS~~vy 136 (520)
+++.++++ ++|++||+||.. ....+++..+++|+.|+.++++++.. .+ -.++|++||...+
T Consensus 86 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~ 165 (277)
T 3tsc_A 86 DRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGM 165 (277)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhC
Confidence 98887775 589999999982 13346678899999999999998643 33 4589999998876
Q ss_pred ccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc-hHHHHHHhcCCC-c
Q 010005 137 FDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL-VPLLVNLAKPGW-T 211 (520)
Q Consensus 137 g~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~-~~~l~~~~~~g~-~ 211 (520)
. +..+...|+.||+..+.+.+.++.+ +|+++.+++||.+.++..... ............ .
T Consensus 166 ~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~ 230 (277)
T 3tsc_A 166 K---------------MQPFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSGDMVTAVGQAMETNPQL 230 (277)
T ss_dssp S---------------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGSHHHHHHHHHHHHTCGGG
T ss_pred C---------------CCCCchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCcccchhhhhhhhcccccHHH
Confidence 2 2234568999999999998877654 589999999999998754321 111111111111 0
Q ss_pred eEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 212 KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 212 ~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.......... .+.+++|+|++++.++.. ......|+.+++.++.
T Consensus 231 ~~~~~~~~p~-r~~~pedvA~~v~~L~s~---~~~~itG~~i~vdGG~ 274 (277)
T 3tsc_A 231 SHVLTPFLPD-WVAEPEDIADTVCWLASD---ESRKVTAAQIPVDQGS 274 (277)
T ss_dssp TTTTCCSSSC-SCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTG
T ss_pred HHHhhhccCC-CCCCHHHHHHHHHHHhCc---cccCCcCCEEeeCCCc
Confidence 0011111222 478999999999988851 1245779999998864
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=172.55 Aligned_cols=221 Identities=13% Similarity=0.059 Sum_probs=156.5
Q ss_pred CCCCeEEEEcCCCh--hHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 6 AIPRTCVVLNGRGF--VGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGatGf--IG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
.++|++|||||+|+ ||+++++.|.++| ++|++.++.... ......+.+ ...++.++.+|++|.+++.++++
T Consensus 29 l~gk~~lVTGasg~~GIG~aia~~la~~G-~~V~~~~r~~~~----~~~~~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~ 101 (293)
T 3grk_A 29 LQGKRGLILGVANNRSIAWGIAKAAREAG-AELAFTYQGDAL----KKRVEPLAE--ELGAFVAGHCDVADAASIDAVFE 101 (293)
T ss_dssp TTTCEEEEECCCSSSSHHHHHHHHHHHTT-CEEEEEECSHHH----HHHHHHHHH--HHTCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCcHHHHHHHHHHHCC-CEEEEEcCCHHH----HHHHHHHHH--hcCCceEEECCCCCHHHHHHHHH
Confidence 34689999999999 9999999999999 589985543110 000000000 01357889999999998888775
Q ss_pred -------CCCEEEEcccCCC-----------CCcchhhHHhhhHHHHHHHHHHHHHCC--CCEEEEeecccccccCCCCC
Q 010005 84 -------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 84 -------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~ll~aa~~~g--vkr~V~~SS~~vyg~~~~~~ 143 (520)
++|++||+||... ...++...+++|+.++.++++++...- -.++|++||...+.
T Consensus 102 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~------ 175 (293)
T 3grk_A 102 TLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEK------ 175 (293)
T ss_dssp HHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTS------
T ss_pred HHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhcc------
Confidence 6899999999732 234567899999999999999997642 34999999988762
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc--hHHHHHHhcCCCceEEecCC
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~--~~~l~~~~~~g~~~~i~g~g 218 (520)
+......|+.||+..+.+.+.++.+ +|+++.+++||.+.++..... .+..........
T Consensus 176 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~-------- 238 (293)
T 3grk_A 176 ---------VMPNYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNA-------- 238 (293)
T ss_dssp ---------BCTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------CCHHHHHHHHHHHS--------
T ss_pred ---------CCCchHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhcccchHHHHHHHHhcC--------
Confidence 2234578999999999998877543 589999999999998754321 122222222211
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
....+..++|+|++++.++.. ......|+.+++.++..
T Consensus 239 -p~~r~~~pedvA~~v~~L~s~---~~~~itG~~i~vdGG~~ 276 (293)
T 3grk_A 239 -PLRRTVTIDEVGDVGLYFLSD---LSRSVTGEVHHADSGYH 276 (293)
T ss_dssp -TTSSCCCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred -CCCCCCCHHHHHHHHHHHcCc---cccCCcceEEEECCCcc
Confidence 223466799999999988762 12457899999998764
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.4e-19 Score=172.48 Aligned_cols=224 Identities=12% Similarity=0.026 Sum_probs=151.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.+++++|||||+|.||++++++|.++| ++|++.++.. |+... ..+.+.+ ...++.++.+|++|.+++.+++
T Consensus 9 l~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 82 (262)
T 3ksu_A 9 LKNKVIVIAGGIKNLGALTAKTFALES-VNLVLHYHQA-----KDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLF 82 (262)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHTTSS-CEEEEEESCG-----GGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEecCc-----cCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence 346899999999999999999999999 5998865421 11100 0000000 1346788999999999888877
Q ss_pred c-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCCCCCC
Q 010005 83 E-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
+ ++|++||+||.. ....+++..+++|+.++.++.+++... +..++|++||...+..
T Consensus 83 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~-------- 154 (262)
T 3ksu_A 83 DFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAY-------- 154 (262)
T ss_dssp HHHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHH--------
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccC--------
Confidence 6 689999999972 233456778999999999999999875 3468999999887632
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
..+...|+.||+..+.+.+.++.+ +|+++.++.||.+..+.. .............+......
T Consensus 155 -------~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~--------~~~~~~~~~~~~~~~~~~~r 219 (262)
T 3ksu_A 155 -------TGFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFF--------YGQETKESTAFHKSQAMGNQ 219 (262)
T ss_dssp -------HCCCCC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHHH--------HTCC------------CCCC
T ss_pred -------CCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccc--------cccCchHHHHHHHhcCcccC
Confidence 123568999999999998877654 589999999999875421 11001111111222233446
Q ss_pred cccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC
Q 010005 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t 262 (520)
+..++|+|++++.++.. .....|+.+++.++....
T Consensus 220 ~~~pedvA~~v~~L~s~----~~~itG~~i~vdGg~~~~ 254 (262)
T 3ksu_A 220 LTKIEDIAPIIKFLTTD----GWWINGQTIFANGGYTTR 254 (262)
T ss_dssp SCCGGGTHHHHHHHHTT----TTTCCSCEEEESTTCCCC
T ss_pred CCCHHHHHHHHHHHcCC----CCCccCCEEEECCCccCC
Confidence 78899999999988761 245679999998876433
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=175.73 Aligned_cols=217 Identities=11% Similarity=0.016 Sum_probs=156.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC---CCCCcEEEEecCCCHH------
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL---SSGRAEYHQVDVRDIS------ 76 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~---~~~~v~~~~~Dl~d~~------ 76 (520)
+++++|||||+|+||+++++.|+++| ++|+++|. |+... ..+.+.+ ...++.++.+|++|.+
T Consensus 45 ~~k~~lVTGas~GIG~aia~~La~~G-~~Vv~~~~-------r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~ 116 (328)
T 2qhx_A 45 TVPVALVTGAAKRLGRSIAEGLHAEG-YAVCLHYH-------RSAAEANALSATLNARRPNSAITVQADLSNVATAPVSG 116 (328)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEES-------SCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC---
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcC-------CCHHHHHHHHHHHHhhcCCeEEEEEeeCCCchhccccc
Confidence 45789999999999999999999999 59998551 32210 0000000 1246889999999988
Q ss_pred -----------HHHHHHc-------CCCEEEEcccCCC-------C--------------CcchhhHHhhhHHHHHHHHH
Q 010005 77 -----------QIKKVLE-------GASTVFYVDATDL-------N--------------TDDFYNCYMIIVQGAKNVVT 117 (520)
Q Consensus 77 -----------~l~~~l~-------~~D~Vih~aa~~~-------~--------------~~~~~~~~~~Nv~gt~~ll~ 117 (520)
++.++++ ++|++||+||... . ..++...+++|+.++.++++
T Consensus 117 ~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~ 196 (328)
T 2qhx_A 117 ADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIK 196 (328)
T ss_dssp ----CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 8887775 7899999999721 1 23456789999999999998
Q ss_pred HHH----HCC------CCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEE
Q 010005 118 ACR----ECK------VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCA 184 (520)
Q Consensus 118 aa~----~~g------vkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~i 184 (520)
++. +.+ ..++|++||...+. +..+...|+.+|+..+.+.+.++.+ +|+++++
T Consensus 197 ~~~~~m~~~~~~~~~~~g~IV~isS~~~~~---------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~ 261 (328)
T 2qhx_A 197 AFAHRVAGTPAKHRGTNYSIINMVDAMTNQ---------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNG 261 (328)
T ss_dssp HHHHHHHHSCGGGSCSCEEEEEECCTTTTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred HHHHHHHhcCCcCCCCCcEEEEECchhhcc---------------CCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEE
Confidence 876 344 57999999987752 2234568999999999998877544 5899999
Q ss_pred EecCccccCCCCCchHHHHHHhcCCCceEEecCCCccc-ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 185 LRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS-DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 185 lRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~-~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
++||.+.++. .. .+..........+ .. .+..++|+|++++.++.. ......|+.+++.++..
T Consensus 262 v~PG~v~T~~-~~-~~~~~~~~~~~~p---------~~~r~~~pedvA~~v~~l~s~---~~~~itG~~i~vdGG~~ 324 (328)
T 2qhx_A 262 VGPGLSVLVD-DM-PPAVWEGHRSKVP---------LYQRDSSAAEVSDVVIFLCSS---KAKYITGTCVKVDGGYS 324 (328)
T ss_dssp EEESSBSCCC-CS-CHHHHHHHHTTCT---------TTTSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred EecCcccCCc-cc-cHHHHHHHHhhCC---------CCCCCCCHHHHHHHHHHHhCc---cccCccCcEEEECCCcc
Confidence 9999999887 33 2333333332221 12 467799999999988851 12456789999988753
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.77 E-value=5.4e-18 Score=167.68 Aligned_cols=218 Identities=13% Similarity=0.030 Sum_probs=153.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC---CCCCcEEEEecCCC----HHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL---SSGRAEYHQVDVRD----ISQ 77 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~---~~~~v~~~~~Dl~d----~~~ 77 (520)
+++|++|||||+|+||+++++.|+++| ++|+++|+... .. ..+.+.+ ...++.++.+|++| .++
T Consensus 21 l~~k~~lVTGas~gIG~aia~~L~~~G-~~V~~~~r~~~-------~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~ 92 (288)
T 2x9g_A 21 MEAPAAVVTGAAKRIGRAIAVKLHQTG-YRVVIHYHNSA-------EAAVSLADELNKERSNTAVVCQADLTNSNVLPAS 92 (288)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHHT-CEEEEEESSCH-------HHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CeEEEEeCCch-------HHHHHHHHHHHhhcCCceEEEEeecCCccCCHHH
Confidence 356899999999999999999999999 59999554320 10 0000000 12467899999999 888
Q ss_pred HHHHHc-------CCCEEEEcccCCC---------CC--------cchhhHHhhhHHHHHHHHHHHHHC----C------
Q 010005 78 IKKVLE-------GASTVFYVDATDL---------NT--------DDFYNCYMIIVQGAKNVVTACREC----K------ 123 (520)
Q Consensus 78 l~~~l~-------~~D~Vih~aa~~~---------~~--------~~~~~~~~~Nv~gt~~ll~aa~~~----g------ 123 (520)
+.++++ ++|++||+||... .. .++...+++|+.++.++.+++... +
T Consensus 93 v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~ 172 (288)
T 2x9g_A 93 CEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSS 172 (288)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCC
Confidence 877765 6899999999721 11 234568899999999999988653 2
Q ss_pred CCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchH
Q 010005 124 VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP 200 (520)
Q Consensus 124 vkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~ 200 (520)
..++|++||...+. +..+...|+.||+..+.+.+.++.+ +|+++++++|+.++++. .. .+
T Consensus 173 ~g~iv~isS~~~~~---------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~~-~~ 235 (288)
T 2x9g_A 173 NLSIVNLCDAMVDQ---------------PCMAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV-AM-GE 235 (288)
T ss_dssp CEEEEEECCTTTTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT-TS-CH
T ss_pred CeEEEEEecccccC---------------CCCCCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc-cc-Ch
Confidence 45899999988762 2234568999999998888776543 58999999999999987 32 12
Q ss_pred HHHHHhcCCCceEEecCCCccccc-ccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 201 LLVNLAKPGWTKFIIGSGENMSDF-TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 201 ~l~~~~~~g~~~~i~g~g~~~~~~-i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
..........+ ...+ ...+|+|++++.++.. ......|+.+++.++..
T Consensus 236 ~~~~~~~~~~p---------~~r~~~~pedvA~~v~~l~s~---~~~~itG~~i~vdGG~~ 284 (288)
T 2x9g_A 236 EEKDKWRRKVP---------LGRREASAEQIADAVIFLVSG---SAQYITGSIIKVDGGLS 284 (288)
T ss_dssp HHHHHHHHTCT---------TTSSCCCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred HHHHHHHhhCC---------CCCCCCCHHHHHHHHHHHhCc---cccCccCCEEEECcchh
Confidence 22222211111 1234 6799999999988862 12456788999987643
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-19 Score=172.04 Aligned_cols=204 Identities=12% Similarity=0.035 Sum_probs=131.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHH---HHHH-
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQI---KKVL- 82 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l---~~~l- 82 (520)
+++++|||||+|+||++++++|.+ | +.|+++++ ++.. +.......++..+.+|+.|.++. .+.+
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~-g-~~v~~~~r--------~~~~--~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 71 (245)
T 3e9n_A 4 KKKIAVVTGATGGMGIEIVKDLSR-D-HIVYALGR--------NPEH--LAALAEIEGVEPIESDIVKEVLEEGGVDKLK 71 (245)
T ss_dssp --CEEEEESTTSHHHHHHHHHHTT-T-SEEEEEES--------CHHH--HHHHHTSTTEEEEECCHHHHHHTSSSCGGGT
T ss_pred CCCEEEEEcCCCHHHHHHHHHHhC-C-CeEEEEeC--------CHHH--HHHHHhhcCCcceecccchHHHHHHHHHHHH
Confidence 468999999999999999999987 8 58888544 3221 11111124688999999887541 1222
Q ss_pred --cCCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCCCCC
Q 010005 83 --EGASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDET 149 (520)
Q Consensus 83 --~~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~~E~ 149 (520)
.++|+|||+||... ...+++..+++|+.++.++.+++. +.+ .++|++||...+.
T Consensus 72 ~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-g~iv~isS~~~~~------------ 138 (245)
T 3e9n_A 72 NLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS-GCVIYINSGAGNG------------ 138 (245)
T ss_dssp TCSCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEC------------------
T ss_pred hcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEcCccccc------------
Confidence 26899999999821 223466789999999888888774 334 6999999998763
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccccccc
Q 010005 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY 226 (520)
Q Consensus 150 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~ 226 (520)
+..+...|+.||+..|.+.+.++.+ +|+++.+++||.+.++........ .+.......+++
T Consensus 139 ---~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~-------------~~~~~~~~~~~~ 202 (245)
T 3e9n_A 139 ---PHPGNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQGLMDS-------------QGTNFRPEIYIE 202 (245)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-----------------------------CCGGGSC
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchhhhhhhh-------------hhcccccccCCC
Confidence 2234578999999999998877653 689999999999998753322111 011122346889
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCceEEEeC
Q 010005 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (520)
Q Consensus 227 v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~ 257 (520)
++|+|++++.+++ ....++++|+.-
T Consensus 203 p~dvA~~i~~l~~------~~~~~~~~~i~~ 227 (245)
T 3e9n_A 203 PKEIANAIRFVID------AGETTQITNVDV 227 (245)
T ss_dssp HHHHHHHHHHHHT------SCTTEEEEEEEE
T ss_pred HHHHHHHHHHHHc------CCCccceeeeEE
Confidence 9999999999987 445677888863
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-21 Score=193.59 Aligned_cols=190 Identities=13% Similarity=0.055 Sum_probs=134.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCc------EEEEecCCcccccCCCCC-CCCCCCCCCCCCcEEEEecCCCHHHHHH
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKC------IVRVTDSTQSLQLDPSES-NSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~------~V~~~D~~~~~~l~r~~~-~~~l~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (520)
+|||+||||+||||++++..|+++|+. +|+++|+.... .+... ...+ .+....++ +|+++.+.+.+
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~--~~~~g~~~dl----~~~~~~~~-~di~~~~~~~~ 76 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAM--KALEGVVMEL----EDCAFPLL-AGLEATDDPKV 76 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGH--HHHHHHHHHH----HTTTCTTE-EEEEEESCHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCch--hhccchhhhh----hccccccc-CCeEeccChHH
Confidence 479999999999999999999999842 89997764210 00000 0001 01112233 67777667788
Q ss_pred HHcCCCEEEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCC-CC-EEEEeecccc-cccCCCCCCCCCCCccCCCCC
Q 010005 81 VLEGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECK-VR-RLVYNSTADV-VFDGSHDIHNGDETLTCCWKF 156 (520)
Q Consensus 81 ~l~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-vk-r~V~~SS~~v-yg~~~~~~~~~~E~~~~~~~p 156 (520)
+++++|+|||+||.. ....++...++.|+.++.+++++|++++ .+ ++++.|+..- .. +..++...+..|
T Consensus 77 a~~~~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~-------~~~~~~~~~~~p 149 (327)
T 1y7t_A 77 AFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNA-------LIAYKNAPGLNP 149 (327)
T ss_dssp HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHH-------HHHHHTCTTSCG
T ss_pred HhCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhH-------HHHHHHcCCCCh
Confidence 899999999999983 2346778899999999999999999986 54 7888887641 11 111111102346
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCc
Q 010005 157 QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT 211 (520)
Q Consensus 157 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~ 211 (520)
.++|+.+|..+|++...++++.|++++++|+++||||+....++.+......|++
T Consensus 150 ~~~yg~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~~~~~~~~~~~~~g~~ 204 (327)
T 1y7t_A 150 RNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRP 204 (327)
T ss_dssp GGEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECSSCEETTEE
T ss_pred hheeccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCCCeEEEEeeeeeeCCee
Confidence 6789999999999999888878999999999999999876555555444444443
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=170.52 Aligned_cols=230 Identities=16% Similarity=0.094 Sum_probs=151.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
..++|+++||||+|+||++++++|+++| ++|+++|+.... +. .....+.. ...++..+.+|++|.+++.++++
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~-~~--~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~ 77 (262)
T 1zem_A 4 KFNGKVCLVTGAGGNIGLATALRLAEEG-TAIALLDMNREA-LE--KAEASVRE--KGVEARSYVCDVTSEEAVIGTVDS 77 (262)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HH--HHHHHHHT--TTSCEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHH-HH--HHHHHHHh--cCCcEEEEEecCCCHHHHHHHHHH
Confidence 3567899999999999999999999999 599995543210 00 00000000 12367889999999988877765
Q ss_pred ------CCCEEEEcccCC-C-------CCcchhhHHhhhHHHHHHHHHHHHHC----CCCEEEEeecccccccCCCCCCC
Q 010005 84 ------GASTVFYVDATD-L-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 ------~~D~Vih~aa~~-~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~----gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|+|||+||.. . ...+++..+++|+.++.++++++... +..++|++||...+..
T Consensus 78 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------- 150 (262)
T 1zem_A 78 VVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKG------- 150 (262)
T ss_dssp HHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSC-------
T ss_pred HHHHhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccC-------
Confidence 689999999863 1 23456778999999999999987653 5679999999887621
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcC---C-Cc--e-EEe
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKP---G-WT--K-FII 215 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~---g-~~--~-~i~ 215 (520)
..+...|+.||+..+.+.+.++. .+|+++++++|+.+..+........+...... . .+ . ...
T Consensus 151 --------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (262)
T 1zem_A 151 --------PPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQM 222 (262)
T ss_dssp --------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHH
T ss_pred --------CCCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcchhhhhccchhhhccccccccCHHHHHHHH
Confidence 12346899999998888777653 36899999999988765311100000000000 0 00 0 000
Q ss_pred cCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 216 g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
........+...+|+|++++.++.. ......|+.+.+.++
T Consensus 223 ~~~~p~~r~~~p~dvA~~v~~l~s~---~~~~itG~~i~vdGG 262 (262)
T 1zem_A 223 IGSVPMRRYGDINEIPGVVAFLLGD---DSSFMTGVNLPIAGG 262 (262)
T ss_dssp HHTSTTSSCBCGGGSHHHHHHHHSG---GGTTCCSCEEEESCC
T ss_pred HhcCCCCCCcCHHHHHHHHHHHcCc---hhcCcCCcEEecCCC
Confidence 0011223467899999999988751 123467888888663
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=170.56 Aligned_cols=198 Identities=13% Similarity=0.071 Sum_probs=136.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
+++++|||||+|+||++++++|.++| ++|++.|+.. .. ....+.+ ..++..+.+|++|.+++.++++
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~--------~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~ 96 (272)
T 4dyv_A 27 GKKIAIVTGAGSGVGRAVAVALAGAG-YGVALAGRRL--------DALQETAAEI-GDDALCVPTDVTDPDSVRALFTAT 96 (272)
T ss_dssp -CCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHH-TSCCEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCH--------HHHHHHHHHh-CCCeEEEEecCCCHHHHHHHHHHH
Confidence 46789999999999999999999999 5999955432 20 0000011 2467899999999998888876
Q ss_pred -----CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHHHH----CC--CCEEEEeecccccccCCCCCC
Q 010005 84 -----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRE----CK--VRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 84 -----~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa~~----~g--vkr~V~~SS~~vyg~~~~~~~ 144 (520)
++|++||+||... ...+++..+++|+.|+.++.+++.. .+ -.++|++||...+.
T Consensus 97 ~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~------- 169 (272)
T 4dyv_A 97 VEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATS------- 169 (272)
T ss_dssp HHHHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTS-------
T ss_pred HHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcC-------
Confidence 7999999999721 2345578999999999888887754 33 35999999987752
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcc
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (520)
+..+...|+.||+..|.+.+.++.+ +|+++.+++||.+..+........ .. ........
T Consensus 170 --------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~--------~~--~~~~~~~~ 231 (272)
T 4dyv_A 170 --------PRPYSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQKMKAG--------VP--QADLSIKV 231 (272)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC------------------------------
T ss_pred --------CCCCchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhhhhhccc--------ch--hhhhcccc
Confidence 2234678999999999998877543 689999999999987643221111 00 00011223
Q ss_pred cccccHHHHHHHHHHHHH
Q 010005 222 SDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~ 239 (520)
..+.+++|+|++++.++.
T Consensus 232 ~~~~~pedvA~~v~fL~s 249 (272)
T 4dyv_A 232 EPVMDVAHVASAVVYMAS 249 (272)
T ss_dssp ----CHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhC
Confidence 457899999999999998
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=163.47 Aligned_cols=221 Identities=13% Similarity=0.026 Sum_probs=159.4
Q ss_pred CCCCeEEEEcCC--ChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC---CCCCC--CCCCCcEEEEecCCCHHHH
Q 010005 6 AIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS---LLPDS--LSSGRAEYHQVDVRDISQI 78 (520)
Q Consensus 6 ~~~~~ILVtGat--GfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~---~l~~~--~~~~~v~~~~~Dl~d~~~l 78 (520)
.++++++||||+ |.||++++++|+++| ++|+++++ +.... ...+. ....++.++.+|++|.+++
T Consensus 18 l~~k~vlITGas~~~giG~~~a~~l~~~G-~~v~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v 88 (267)
T 3gdg_A 18 LKGKVVVVTGASGPKGMGIEAARGCAEMG-AAVAITYA--------SRAQGAEENVKELEKTYGIKAKAYKCQVDSYESC 88 (267)
T ss_dssp CTTCEEEETTCCSSSSHHHHHHHHHHHTS-CEEEECBS--------SSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHH
T ss_pred cCCCEEEEECCCCCCChHHHHHHHHHHCC-CeEEEEeC--------CcchhHHHHHHHHHHhcCCceeEEecCCCCHHHH
Confidence 356899999999 899999999999999 59998543 32210 00000 0134688899999999988
Q ss_pred HHHHc-------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCC
Q 010005 79 KKVLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGS 140 (520)
Q Consensus 79 ~~~l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~ 140 (520)
.++++ ++|++||+||... ...+++..+++|+.++.++.+++ ++.+..++|++||...+...
T Consensus 89 ~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~- 167 (267)
T 3gdg_A 89 EKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIAN- 167 (267)
T ss_dssp HHHHHHHHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC-
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEccccccccC-
Confidence 87775 5799999999721 33456779999999999999988 45566799999998765211
Q ss_pred CCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCCCC--ceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCC
Q 010005 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDG--LLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 141 ~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g--i~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g 218 (520)
...+...|+.||+..|.+.+.++.+.+ +++.++.||.+..+......+.........
T Consensus 168 ------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~~~~~~~~~~~~~~~--------- 226 (267)
T 3gdg_A 168 ------------FPQEQTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLSDFVPKETQQLWHSM--------- 226 (267)
T ss_dssp ------------SSSCCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCGGGSCHHHHHHHHTT---------
T ss_pred ------------CCCCCCcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchhhhCCHHHHHHHHhc---------
Confidence 113456899999999999887765432 899999999998765433333333333222
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
.....+.+++|+|++++.++.. ......|+.+++.++..
T Consensus 227 ~~~~r~~~~~dva~~~~~l~s~---~~~~itG~~i~vdgG~~ 265 (267)
T 3gdg_A 227 IPMGRDGLAKELKGAYVYFASD---ASTYTTGADLLIDGGYT 265 (267)
T ss_dssp STTSSCEETHHHHHHHHHHHST---TCTTCCSCEEEESTTGG
T ss_pred CCCCCCcCHHHHHhHhheeecC---ccccccCCEEEECCcee
Confidence 2345677899999999988751 12457799999988753
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.5e-19 Score=173.18 Aligned_cols=218 Identities=15% Similarity=0.104 Sum_probs=154.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++++++||||+|.||++++++|+++| ++|++.|+.. ... ...+.+ ...++..+.+|++|.+++.+++
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~ 101 (275)
T 4imr_A 31 LRGRTALVTGSSRGIGAAIAEGLAGAG-AHVILHGVKP--------GSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLI 101 (275)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESST--------TTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCCH--------HHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHH
Confidence 356899999999999999999999999 5999965432 210 000000 1346889999999998888777
Q ss_pred c------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCC
Q 010005 83 E------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 83 ~------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
+ ++|++||+||.. ....+++..+++|+.|+.++++++ ++.+..++|++||...+.
T Consensus 102 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~-------- 173 (275)
T 4imr_A 102 ERAEAIAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLR-------- 173 (275)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS--------
T ss_pred HHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCC--------
Confidence 5 689999999972 233456778999999999999998 445667999999988762
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch---HHHHHHhcCCCceEEecCCC
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV---PLLVNLAKPGWTKFIIGSGE 219 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~---~~l~~~~~~g~~~~i~g~g~ 219 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+..+...... +.......... .
T Consensus 174 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~--------~ 238 (275)
T 4imr_A 174 -------PKSVVTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADRRAQDPEGWDEYVRTL--------N 238 (275)
T ss_dssp -------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHHHHHCHHHHHHHHHHH--------S
T ss_pred -------CCCCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCcccccccccChHHHHHHHhhc--------C
Confidence 2234467999999999988877554 4899999999999876321100 11111111100 0
Q ss_pred cccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
....+...+|+|++++.++.. ......|+.+++.++
T Consensus 239 p~~r~~~pedvA~~v~fL~s~---~a~~itG~~i~vdGG 274 (275)
T 4imr_A 239 WMGRAGRPEEMVGAALFLASE---ACSFMTGETIFLTGG 274 (275)
T ss_dssp TTCSCBCGGGGHHHHHHHHSG---GGTTCCSCEEEESSC
T ss_pred ccCCCcCHHHHHHHHHHHcCc---ccCCCCCCEEEeCCC
Confidence 122356699999999988761 124567999999875
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-18 Score=163.13 Aligned_cols=208 Identities=13% Similarity=0.072 Sum_probs=147.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCC---CCCCCcEEEEecCCCHHHHHHHHc
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDS---LSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~---~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
+|++|||||+|+||++++++|+++| ++|++.++ +.++. ...+. ....++.++.+|++|.+++.++++
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G-~~V~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 72 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDG-YALALGAR--------SVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSK 72 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEES--------CHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeC--------CHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHH
Confidence 5799999999999999999999999 58998544 32200 00000 013468899999999999988876
Q ss_pred -------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHC---CCCEEEEeecccccccCCCCCCCC
Q 010005 84 -------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 -------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~---gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|++||+||.. ....++...+++|+.|+.++++++... +..++|++||...+.
T Consensus 73 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~~--------- 143 (235)
T 3l77_A 73 KVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSAR--------- 143 (235)
T ss_dssp -HHHHHSSCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSS---------
T ss_pred HHHHhcCCCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhcc---------
Confidence 689999999982 133566789999999999999998642 234677777765541
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcC-CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANN-IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~-~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (520)
+......|+.+|+..|.+.+.+.. ..|+++.+++||.+-.+..... .+......++
T Consensus 144 ------~~~~~~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~~~~~-----------------~~~~~~~~~~ 200 (235)
T 3l77_A 144 ------LIPYGGGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYFGGSK-----------------PGKPKEKGYL 200 (235)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSSTTTCC-----------------SCCCGGGTCB
T ss_pred ------cCCCcchHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCcccccccccc-----------------CCcccccCCC
Confidence 112346899999999999887632 3589999999999976643211 0111223678
Q ss_pred cHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 226 ~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.++|+|++++.++... .....++.....+++
T Consensus 201 ~p~dva~~v~~l~~~~---~~~~~~~~~~~~~~~ 231 (235)
T 3l77_A 201 KPDEIAEAVRCLLKLP---KDVRVEELMLRSVYQ 231 (235)
T ss_dssp CHHHHHHHHHHHHTSC---TTCCCCEEEECCTTS
T ss_pred CHHHHHHHHHHHHcCC---CCCccceEEEeeccc
Confidence 8999999999988721 123455555554444
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-18 Score=167.16 Aligned_cols=201 Identities=13% Similarity=0.091 Sum_probs=142.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHH
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
..++|+++||||+|.||++++++|.++| ++|+++++. ..+ ..+.+.+ ...++..+.+|++|++++.++
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G-~~V~~~~r~--------~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~ 74 (247)
T 2jah_A 4 ALQGKVALITGASSGIGEATARALAAEG-AAVAIAARR--------VEKLRALGDELTAAGAKVHVLELDVADRQGVDAA 74 (247)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESC--------HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECC--------HHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence 3567899999999999999999999999 599995543 210 0000000 124678899999999988877
Q ss_pred Hc-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCC
Q 010005 82 LE-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 82 l~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~ 143 (520)
++ ++|++||+||.. ....+++..+++|+.|+.++.+++.. .+ .++|++||...+.
T Consensus 75 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~------ 147 (247)
T 2jah_A 75 VASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-GTVVQMSSIAGRV------ 147 (247)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTC------
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEEEEEccHHhcC------
Confidence 75 689999999972 12235677899999999999998753 35 7999999987752
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCch-HHHHHHhcCCCceEEecCCC
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV-PLLVNLAKPGWTKFIIGSGE 219 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~-~~l~~~~~~g~~~~i~g~g~ 219 (520)
+..+...|+.+|+..+.+.+.++. .+|+++++++||.+.++...... ......... .+ +
T Consensus 148 ---------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~-----~~--~- 210 (247)
T 2jah_A 148 ---------NVRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITHTATKEMYEQ-----RI--S- 210 (247)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCCCHHHHHHHHH-----HT--T-
T ss_pred ---------CCCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcchhcccchhhHHHHHh-----cc--c-
Confidence 123456899999999988777653 36899999999999887432111 111111100 00 1
Q ss_pred cccccccHHHHHHHHHHHHH
Q 010005 220 NMSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~ 239 (520)
...+...+|+|++++.++.
T Consensus 211 -~~~~~~pedvA~~v~~l~s 229 (247)
T 2jah_A 211 -QIRKLQAQDIAEAVRYAVT 229 (247)
T ss_dssp -TSCCBCHHHHHHHHHHHHH
T ss_pred -ccCCCCHHHHHHHHHHHhC
Confidence 1125789999999999887
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.4e-18 Score=164.64 Aligned_cols=212 Identities=15% Similarity=0.081 Sum_probs=146.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc----
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~---- 83 (520)
|+++||||+|+||++++++|.++| ++|++.|+. ..+ ..+.+.+ ..++..+.+|++|.+++.++++
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~--------~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~ 70 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQG-HKVIATGRR--------QERLQELKDEL-GDNLYIAQLDVRNRAAIEEMLASLPA 70 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTT-CEEEEEESC--------HHHHHHHHHHH-CTTEEEEECCTTCHHHHHHHHHTSCT
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCC--------HHHHHHHHHHh-cCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999999 599995543 220 0011111 1367889999999999998886
Q ss_pred ---CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCCCC
Q 010005 84 ---GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 ---~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
++|++||+||... ...+++..+++|+.|+.++.+++. +.+..++|++||...+.
T Consensus 71 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~----------- 139 (248)
T 3asu_A 71 EWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSW----------- 139 (248)
T ss_dssp TTCCCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS-----------
T ss_pred hCCCCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhcc-----------
Confidence 5899999999631 224567799999999999988886 45667999999987752
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCcccc-CCCCCchHHHHHHhcCCCceEEecCCCccccc
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFG-PGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyG-p~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (520)
+..+...|+.||+..|.+.+.++.+ +|+++++++||.+.| +........ . ........ ....+
T Consensus 140 ----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~~~~~~---~--~~~~~~~~----~~~~~ 206 (248)
T 3asu_A 140 ----PYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKG---D--DGKAEKTY----QNTVA 206 (248)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC-------------------------------CC
T ss_pred ----CCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchhhcccC---c--hHHHHHHH----hccCC
Confidence 2234568999999999998876543 589999999999994 432111000 0 00000000 01234
Q ss_pred ccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 225 i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
+..+|+|++++.++.. .....++...+...
T Consensus 207 ~~p~dvA~~v~~l~s~----~~~~~g~~i~v~~~ 236 (248)
T 3asu_A 207 LTPEDVSEAVWWVSTL----PAHVNINTLEMMPV 236 (248)
T ss_dssp BCHHHHHHHHHHHHHS----CTTCCCCEEEECCT
T ss_pred CCHHHHHHHHHHHhcC----CccceeeEEEEccc
Confidence 6899999999998872 24566777777653
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-18 Score=166.61 Aligned_cols=190 Identities=14% Similarity=0.027 Sum_probs=138.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
++|++|||||+|.||++++++|.++| ++|++.|+. ..+ ....+.+ ..++..+.+|++|.+++.++++
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G-~~V~~~~r~--------~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~ 71 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERG-HQVSMMGRR--------YQRLQQQELLL-GNAVIGIVADLAHHEDVDVAFAAA 71 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESC--------HHHHHHHHHHH-GGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECC--------HHHHHHHHHHh-cCCceEEECCCCCHHHHHHHHHHH
Confidence 45899999999999999999999999 599995543 221 0000111 1257899999999998887775
Q ss_pred -----CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHC---CCCEEEEeecccccccCCCCCCCCCC
Q 010005 84 -----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 -----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~---gvkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
++|++||+||.. ....+++..+++|+.|+.++.+++... .-.++|++||...+.
T Consensus 72 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~----------- 140 (235)
T 3l6e_A 72 VEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQV----------- 140 (235)
T ss_dssp HHHHCSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCS-----------
T ss_pred HHhcCCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcC-----------
Confidence 589999999972 234567789999999999999988542 113999999987652
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccc
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (520)
+..+...|+.||+..+.+.+.++. .+|+++.+++||.+-.+...... ......+.
T Consensus 141 ----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~------------------~~~~~~~~ 198 (235)
T 3l6e_A 141 ----GKANESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWDNTD------------------HVDPSGFM 198 (235)
T ss_dssp ----SCSSHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC-----------------------------CB
T ss_pred ----CCCCCcHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcchhccC------------------CCCCcCCC
Confidence 122346899999999999887754 36899999999998765321100 01112578
Q ss_pred cHHHHHHHHHHHHH
Q 010005 226 YVENVAHAHVCAAE 239 (520)
Q Consensus 226 ~v~Dva~ai~~~~~ 239 (520)
.++|+|++++.++.
T Consensus 199 ~pedvA~~v~~l~~ 212 (235)
T 3l6e_A 199 TPEDAAAYMLDALE 212 (235)
T ss_dssp CHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHh
Confidence 89999999998876
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-18 Score=168.45 Aligned_cols=220 Identities=12% Similarity=0.099 Sum_probs=156.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCC--CCCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDS--LSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~--~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++++++||||+|.||++++++|+++| ++|++.+. |+... ...... ....++..+.+|++|.+++.+++
T Consensus 5 l~~k~vlITGas~gIG~~~a~~l~~~G-~~v~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 76 (255)
T 3icc_A 5 LKGKVALVTGASRGIGRAIAKRLANDG-ALVAIHYG-------NRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALY 76 (255)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEES-------SCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEeC-------CchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHH
Confidence 456899999999999999999999999 58877432 22110 000000 01245778999999998877666
Q ss_pred cC-------------CCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCC
Q 010005 83 EG-------------ASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGS 140 (520)
Q Consensus 83 ~~-------------~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~ 140 (520)
+. +|++||+||.. ....+++..+++|+.++.++++++... +..++|++||...+.
T Consensus 77 ~~~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~--- 153 (255)
T 3icc_A 77 SSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI--- 153 (255)
T ss_dssp HHHHHHHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTS---
T ss_pred HHHHHHhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhcc---
Confidence 42 89999999972 223445678999999999999999776 345899999988762
Q ss_pred CCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch--HHHHHHhcCCCceEEe
Q 010005 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFII 215 (520)
Q Consensus 141 ~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~--~~l~~~~~~g~~~~i~ 215 (520)
+......|+.||+..+.+.+.++.+ +|+++.+++||.+..+...... +.........
T Consensus 154 ------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~------ 215 (255)
T 3icc_A 154 ------------SLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLSDPMMKQYATTI------ 215 (255)
T ss_dssp ------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTTTSHHHHHHHHHT------
T ss_pred ------------CCCCcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhhcccHHHHHhhhcc------
Confidence 1233568999999999988877544 5899999999999987654321 1112221111
Q ss_pred cCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 216 g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
.....+.+++|+|++++.++.. ......|+.+++.++..
T Consensus 216 ---~~~~~~~~~~dva~~~~~l~s~---~~~~~tG~~i~vdgG~~ 254 (255)
T 3icc_A 216 ---SAFNRLGEVEDIADTAAFLASP---DSRWVTGQLIDVSGGSC 254 (255)
T ss_dssp ---STTSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESSSTT
T ss_pred ---CCcCCCCCHHHHHHHHHHHhCc---ccCCccCCEEEecCCee
Confidence 2234577899999999988751 13457899999988753
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-17 Score=163.62 Aligned_cols=199 Identities=11% Similarity=0.088 Sum_probs=137.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
++|++|||||+|.||+++++.|.++| ++|+++|+.. .+ ....+.+ ...++..+.+|++|.+++.++++
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~--------~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~ 73 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGVAG-AKILLGARRQ--------ARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQ 73 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSH--------HHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEECCH--------HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 46899999999999999999999999 5999955432 10 0000000 12457789999999998887765
Q ss_pred -------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCC
Q 010005 84 -------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 -------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|++||+||.. ....++...+++|+.|+.++.+++. +.+..++|++||...+.
T Consensus 74 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~-------- 145 (264)
T 3tfo_A 74 AAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALS-------- 145 (264)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC--------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcc--------
Confidence 689999999972 1335667889999999998888874 34567999999988762
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCCC-CceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccccc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNID-GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (520)
+..+...|+.||+..+.+.+.++.+. |+++.+++||.+..+........ ....... .....+
T Consensus 146 -------~~~~~~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~v~T~~~~~~~~~--------~~~~~~~--~~~~~~ 208 (264)
T 3tfo_A 146 -------VVPTAAVYCATKFAVRAISDGLRQESTNIRVTCVNPGVVESELAGTITHE--------ETMAAMD--TYRAIA 208 (264)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECCC---------------------------------C
T ss_pred -------cCCCChhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCcCcccccccch--------hHHHHHH--hhhccC
Confidence 22345689999999999988776543 89999999999987643221110 0000000 011124
Q ss_pred ccHHHHHHHHHHHHH
Q 010005 225 TYVENVAHAHVCAAE 239 (520)
Q Consensus 225 i~v~Dva~ai~~~~~ 239 (520)
...+|+|++++.++.
T Consensus 209 ~~pedvA~~v~~l~s 223 (264)
T 3tfo_A 209 LQPADIARAVRQVIE 223 (264)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc
Confidence 689999999999998
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-18 Score=168.05 Aligned_cols=199 Identities=12% Similarity=0.072 Sum_probs=140.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC-CCCCcEEEEecCCCHHHHHHHHc
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~-~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
..+++++|||||+|.||++++++|.++| ++|+++|+.... +. .....+.... ...++.++.+|++|.+++.++++
T Consensus 4 ~~~~k~~lVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~-~~--~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 79 (250)
T 3nyw_A 4 EKQKGLAIITGASQGIGAVIAAGLATDG-YRVVLIARSKQN-LE--KVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIK 79 (250)
T ss_dssp -CCCCEEEEESTTSHHHHHHHHHHHHHT-CEEEEEESCHHH-HH--HHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHH
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCHHH-HH--HHHHHHHHhccccCcceEEeccCCCHHHHHHHHH
Confidence 4567899999999999999999999999 599995543210 00 0000000000 11467899999999988887775
Q ss_pred -------CCCEEEEcccCCC------CCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCC
Q 010005 84 -------GASTVFYVDATDL------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 -------~~D~Vih~aa~~~------~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|++||+||... ...+++..+++|+.|+.++.+++ ++.+..++|++||...+.
T Consensus 80 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--------- 150 (250)
T 3nyw_A 80 DIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKY--------- 150 (250)
T ss_dssp HHHHHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC--------------
T ss_pred HHHHhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcC---------
Confidence 5899999999821 12345678999999999999988 445667999999987652
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+..+. .+.... ......
T Consensus 151 ------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~--------~~~~~~---------~~~~~~ 207 (250)
T 3nyw_A 151 ------GFADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDM--------AKKAGT---------PFKDEE 207 (250)
T ss_dssp --------CCTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHH--------HHHTTC---------CSCGGG
T ss_pred ------CCCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCch--------hhhcCC---------Cccccc
Confidence 1234678999999999988877544 58999999999987541 111111 122345
Q ss_pred cccHHHHHHHHHHHHH
Q 010005 224 FTYVENVAHAHVCAAE 239 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~ 239 (520)
+++.+|+|++++.++.
T Consensus 208 ~~~p~dva~~v~~l~s 223 (250)
T 3nyw_A 208 MIQPDDLLNTIRCLLN 223 (250)
T ss_dssp SBCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHc
Confidence 8899999999998887
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=164.75 Aligned_cols=218 Identities=11% Similarity=0.024 Sum_probs=155.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC---CCCCcEEEEecCCCHH-----
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL---SSGRAEYHQVDVRDIS----- 76 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~---~~~~v~~~~~Dl~d~~----- 76 (520)
+++|++|||||+|.||+++++.|+++| ++|+++|. |+... ....+.+ ...++..+.+|++|.+
T Consensus 7 l~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~~-------r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~ 78 (291)
T 1e7w_A 7 PTVPVALVTGAAKRLGRSIAEGLHAEG-YAVCLHYH-------RSAAEANALSATLNARRPNSAITVQADLSNVATAPVS 78 (291)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEES-------SCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEcC-------CCHHHHHHHHHHHhhhcCCeeEEEEeecCCccccccc
Confidence 456899999999999999999999999 59998551 32210 0000000 1246889999999998
Q ss_pred ------------HHHHHHc-------CCCEEEEcccCCC-------C--------------CcchhhHHhhhHHHHHHHH
Q 010005 77 ------------QIKKVLE-------GASTVFYVDATDL-------N--------------TDDFYNCYMIIVQGAKNVV 116 (520)
Q Consensus 77 ------------~l~~~l~-------~~D~Vih~aa~~~-------~--------------~~~~~~~~~~Nv~gt~~ll 116 (520)
++.++++ ++|++||+||... . ..++...+++|+.++.+++
T Consensus 79 ~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~ 158 (291)
T 1e7w_A 79 GADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLI 158 (291)
T ss_dssp ----CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHH
Confidence 8887775 6899999999721 1 3345678999999999999
Q ss_pred HHHHH----CC------CCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEE
Q 010005 117 TACRE----CK------VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTC 183 (520)
Q Consensus 117 ~aa~~----~g------vkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ 183 (520)
+++.. .+ ..++|++||...+. +..+...|+.||+..+.+.+.++.+ +|+++.
T Consensus 159 ~~~~~~m~~~~~~~~~~~g~Iv~isS~~~~~---------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn 223 (291)
T 1e7w_A 159 KAFAHRVAGTPAKHRGTNYSIINMVDAMTNQ---------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVN 223 (291)
T ss_dssp HHHHHHHHTSCGGGSCSCEEEEEECCTTTTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred HHHHHHHHhcCCCCCCCCcEEEEEechhhcC---------------CCCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEE
Confidence 98863 44 57999999988752 1234568999999999988876543 589999
Q ss_pred EEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccc-ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 184 ALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS-DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 184 ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~-~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
+++||.+..+. . .-+..........+ .. .+...+|+|++++.++.. ......|+.+++.++..
T Consensus 224 ~v~PG~v~T~~-~-~~~~~~~~~~~~~p---------~~~r~~~pedvA~~v~~l~s~---~~~~itG~~i~vdGG~~ 287 (291)
T 1e7w_A 224 GVGPGLSVLVD-D-MPPAVWEGHRSKVP---------LYQRDSSAAEVSDVVIFLCSS---KAKYITGTCVKVDGGYS 287 (291)
T ss_dssp EEEESSBCCGG-G-SCHHHHHHHHTTCT---------TTTSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred EEeeCCccCCc-c-CCHHHHHHHHhhCC---------CCCCCCCHHHHHHHHHHHhCC---cccCccCcEEEECCCcc
Confidence 99999997765 2 11333232222211 12 366799999999988851 12456789999988653
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-18 Score=165.54 Aligned_cols=210 Identities=12% Similarity=0.056 Sum_probs=146.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecC--CCHHHHHHHHc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV--RDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl--~d~~~l~~~l~ 83 (520)
.++++++||||+|+||++++++|+++| ++|+++|+.... +. .....+. .....+..++.+|+ .|.+++.++++
T Consensus 12 l~~k~vlITGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~-~~--~~~~~~~-~~~~~~~~~~~~d~d~~~~~~~~~~~~ 86 (247)
T 3i1j_A 12 LKGRVILVTGAARGIGAAAARAYAAHG-ASVVLLGRTEAS-LA--EVSDQIK-SAGQPQPLIIALNLENATAQQYRELAA 86 (247)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HH--HHHHHHH-HTTSCCCEEEECCTTTCCHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEecCHHH-HH--HHHHHHH-hcCCCCceEEEeccccCCHHHHHHHHH
Confidence 456899999999999999999999999 599995543210 00 0000000 01124567788887 88887776664
Q ss_pred -------CCCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCC
Q 010005 84 -------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 84 -------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
++|++||+||... ...+++..+++|+.++.++++++ ++.+..++|++||...+.
T Consensus 87 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~------- 159 (247)
T 3i1j_A 87 RVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRK------- 159 (247)
T ss_dssp HHHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTS-------
T ss_pred HHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcC-------
Confidence 6899999999721 23456778999999999999998 455667999999987652
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC----CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCc
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI----DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~----~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~ 220 (520)
+..+...|+.+|+..|.+.+.++.+ .|+++.+++||.+..+. ....... ..
T Consensus 160 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~~--------~~~~~~~---------~~ 214 (247)
T 3i1j_A 160 --------GRANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTGM--------RAQAYPD---------EN 214 (247)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSHH--------HHHHSTT---------SC
T ss_pred --------CCCCcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCcc--------chhcccc---------cC
Confidence 2234568999999999998876543 68999999999886531 1111111 12
Q ss_pred ccccccHHHHHHHHHHHHHhhhcccccCCCceEEE
Q 010005 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFI 255 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni 255 (520)
...+...+|+|++++.++.. ......|+.+++
T Consensus 215 ~~~~~~p~dva~~~~~l~s~---~~~~itG~~i~~ 246 (247)
T 3i1j_A 215 PLNNPAPEDIMPVYLYLMGP---DSTGINGQALNA 246 (247)
T ss_dssp GGGSCCGGGGTHHHHHHHSG---GGTTCCSCEEEC
T ss_pred ccCCCCHHHHHHHHHHHhCc---hhccccCeeecC
Confidence 23466799999999988851 123466776654
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-18 Score=170.54 Aligned_cols=193 Identities=11% Similarity=0.043 Sum_probs=139.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCC---CCCCCcEEEEecCCCHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDS---LSSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~---~~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
.++++|+||||+|+||+++++.|+++| ++|+++|+ ++.+. .+.+. ....++.++.+|++|.+++.++
T Consensus 26 ~~~k~vlITGasggIG~~la~~l~~~G-~~V~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~ 96 (286)
T 1xu9_A 26 LQGKKVIVTGASKGIGREMAYHLAKMG-AHVVVTAR--------SKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQF 96 (286)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEES--------CHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEEC--------CHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHH
Confidence 346899999999999999999999999 59999554 32210 00000 0112578899999999888877
Q ss_pred Hc-------CCCEEEEc-ccCCC------CCcchhhHHhhhHHHHHHHHHHHHHC---CCCEEEEeecccccccCCCCCC
Q 010005 82 LE-------GASTVFYV-DATDL------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 82 l~-------~~D~Vih~-aa~~~------~~~~~~~~~~~Nv~gt~~ll~aa~~~---gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
++ ++|+|||+ |+... ...++...+++|+.|+.++++++... +.+++|++||...+.
T Consensus 97 ~~~~~~~~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~------- 169 (286)
T 1xu9_A 97 VAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKV------- 169 (286)
T ss_dssp HHHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTS-------
T ss_pred HHHHHHHcCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCccccc-------
Confidence 75 69999999 55521 22345678999999999999988543 236999999987652
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcC-----CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCC
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANN-----IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGE 219 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~-----~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~ 219 (520)
+..+...|+.||+..|.+.+.++. ..++++++++||.+.++. ...... +.
T Consensus 170 --------~~~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~--------~~~~~~---------~~ 224 (286)
T 1xu9_A 170 --------AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTET--------AMKAVS---------GI 224 (286)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHH--------HHHHSC---------GG
T ss_pred --------CCCCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChh--------HHHhcc---------cc
Confidence 123457899999999998877654 358999999999987542 111111 11
Q ss_pred cccccccHHHHHHHHHHHHH
Q 010005 220 NMSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~ 239 (520)
....+++++|+|++++.+++
T Consensus 225 ~~~~~~~~~~vA~~i~~~~~ 244 (286)
T 1xu9_A 225 VHMQAAPKEECALEIIKGGA 244 (286)
T ss_dssp GGGGCBCHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHh
Confidence 23467889999999998887
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=165.17 Aligned_cols=215 Identities=16% Similarity=0.122 Sum_probs=148.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCC---CCC--CCCCcEEEEecCCCHHHH
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLP---DSL--SSGRAEYHQVDVRDISQI 78 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~-~~~l~---~~~--~~~~v~~~~~Dl~d~~~l 78 (520)
..+++++|||||+|.||++++++|.++| ++|+++|+... +... ...+. +.+ ...++.++.+|++|.+++
T Consensus 6 ~l~~k~vlVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 80 (285)
T 3sc4_A 6 SLRGKTMFISGGSRGIGLAIAKRVAADG-ANVALVAKSAE----PHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAV 80 (285)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHTTT-CEEEEEESCCS----CCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECChh----hhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHH
Confidence 3467899999999999999999999999 59999654321 0000 00000 000 124678899999999988
Q ss_pred HHHHc-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHC----CCCEEEEeecccccccCC
Q 010005 79 KKVLE-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGS 140 (520)
Q Consensus 79 ~~~l~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~----gvkr~V~~SS~~vyg~~~ 140 (520)
.++++ ++|++||+||.. ....+++..+++|+.++.++.+++... +..++|++||...+...
T Consensus 81 ~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~- 159 (285)
T 3sc4_A 81 AAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPK- 159 (285)
T ss_dssp HHHHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSGG-
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccCC-
Confidence 87776 789999999972 223455778889999999999998654 55699999998765210
Q ss_pred CCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecC
Q 010005 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGS 217 (520)
Q Consensus 141 ~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~ 217 (520)
..+...|+.||+..+.+.+.++.+ +|+++.+++|+.+... + +........
T Consensus 160 -------------~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t------~-~~~~~~~~~------- 212 (285)
T 3sc4_A 160 -------------WLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVAT------A-AVQNLLGGD------- 212 (285)
T ss_dssp -------------GSCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCC------H-HHHHHHTSC-------
T ss_pred -------------CCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCcccc------H-HHHhhcccc-------
Confidence 123478999999999998877654 6899999999843211 1 112211111
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~ 257 (520)
.....+...+|+|++++.++.. .....|+.+.+.+
T Consensus 213 -~~~~r~~~pedvA~~~~~l~s~----~~~~tG~~i~~dg 247 (285)
T 3sc4_A 213 -EAMARSRKPEVYADAAYVVLNK----PSSYTGNTLLCED 247 (285)
T ss_dssp -CCCTTCBCTHHHHHHHHHHHTS----CTTCCSCEEEHHH
T ss_pred -ccccCCCCHHHHHHHHHHHhCC----cccccceEEEEcC
Confidence 1233567799999999988871 1145666655543
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=163.59 Aligned_cols=213 Identities=14% Similarity=0.046 Sum_probs=145.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCC-CCCcEEEEecCCCHHHHHHHHcC--
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLS-SGRAEYHQVDVRDISQIKKVLEG-- 84 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~-~~~v~~~~~Dl~d~~~l~~~l~~-- 84 (520)
|++|||||+|.||++++++|+++| ++|+++|+.. .+ ..+.+.+. ..++..+.+|++|.+++.++++.
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 92 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAG-WSLVLTGRRE--------ERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLP 92 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCC
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCH--------HHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 789999999999999999999999 5999955432 10 00000011 13678899999999999998875
Q ss_pred -----CCEEEEcccCCC--------CCcchhhHHhhhHHHHHHHHHHHH----HCCCC-EEEEeecccccccCCCCCCCC
Q 010005 85 -----ASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACR----ECKVR-RLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 85 -----~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvk-r~V~~SS~~vyg~~~~~~~~~ 146 (520)
+|++||+||... ...+++..+++|+.|+.++.+++. +.+.. ++|++||...+.
T Consensus 93 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~--------- 163 (272)
T 2nwq_A 93 EEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKW--------- 163 (272)
T ss_dssp GGGSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTS---------
T ss_pred HHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhcc---------
Confidence 499999999732 124567789999999888777664 45666 999999987752
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
+..+...|+.+|+..|.+.+.++.+ +|+++++++||.+.++........ . ......... ...
T Consensus 164 ------~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~---~--~~~~~~~~~----~~~ 228 (272)
T 2nwq_A 164 ------PYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVRFGG---D--QARYDKTYA----GAH 228 (272)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC-----------------------------CCC
T ss_pred ------CCCCCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhccccc---c--hHHHHHhhc----cCC
Confidence 1223568999999999999887654 589999999999987743211100 0 000000000 112
Q ss_pred cccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
++..+|+|++++.++.. .....++.+.+.++
T Consensus 229 ~~~pedvA~~v~~l~s~----~~~~~g~~i~v~~~ 259 (272)
T 2nwq_A 229 PIQPEDIAETIFWIMNQ----PAHLNINSLEIMPV 259 (272)
T ss_dssp CBCHHHHHHHHHHHHTS----CTTEEEEEEEEEET
T ss_pred CCCHHHHHHHHHHHhCC----CccCccceEEEeec
Confidence 46899999999988861 23455666666553
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-18 Score=166.36 Aligned_cols=214 Identities=15% Similarity=0.132 Sum_probs=144.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCC--CCCcEEEEecCCCHHHHH----H
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLS--SGRAEYHQVDVRDISQIK----K 80 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~--~~~v~~~~~Dl~d~~~l~----~ 80 (520)
||++|||||+|+||++++++|+++| ++|+++| |+..+. ...+ +. ..++..+ |..+.+.+. +
T Consensus 1 Mk~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~--------r~~~~~~~~~~-l~~~~~~~~~~--d~~~v~~~~~~~~~ 68 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMGSALRLSEAG-HTVACHD--------ESFKQKDELEA-FAETYPQLKPM--SEQEPAELIEAVTS 68 (254)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTT-CEEEECC--------GGGGSHHHHHH-HHHHCTTSEEC--CCCSHHHHHHHHHH
T ss_pred CeEEEEeCCCchHHHHHHHHHHHCC-CEEEEEe--------CCHHHHHHHHH-HHhcCCcEEEE--CHHHHHHHHHHHHH
Confidence 3689999999999999999999999 5999944 433210 0000 00 1223333 555443322 2
Q ss_pred HHcCCCEEEEcccCC-C-------CCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCCCC
Q 010005 81 VLEGASTVFYVDATD-L-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 81 ~l~~~D~Vih~aa~~-~-------~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
.+.++|++||+||.. . ...+++..+++|+.++.++.+++. +.+..++|++||...+.
T Consensus 69 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 137 (254)
T 1zmt_A 69 AYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFG----------- 137 (254)
T ss_dssp HHSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTS-----------
T ss_pred HhCCCCEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCccccc-----------
Confidence 233799999999963 2 223467789999999999998874 44567999999987762
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch-HHH-------HHHhcCCCceEEecC
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-PLL-------VNLAKPGWTKFIIGS 217 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~-~~l-------~~~~~~g~~~~i~g~ 217 (520)
+..+...|+.||+..|.+.+.++.+ +|+++++++|+.++||...... ..+ ......
T Consensus 138 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~~~~~~~~~~--------- 204 (254)
T 1zmt_A 138 ----PWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKK--------- 204 (254)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHH---------
T ss_pred ----CCCCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccCCCcccccChHHHHHHhc---------
Confidence 1234568999999999998877543 5899999999999888654221 111 111110
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
......+.+++|+|++++.++.. ......|+.+++.++..
T Consensus 205 ~~p~~~~~~p~dvA~~v~~l~s~---~~~~~tG~~~~vdgG~~ 244 (254)
T 1zmt_A 205 VTALQRLGTQKELGELVAFLASG---SCDYLTGQVFWLAGGFP 244 (254)
T ss_dssp HSSSSSCBCHHHHHHHHHHHHTT---SCGGGTTCEEEESTTCC
T ss_pred cCCCCCCcCHHHHHHHHHHHhCc---ccCCccCCEEEECCCch
Confidence 01122467899999999988761 12346789999988753
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.8e-18 Score=168.22 Aligned_cols=219 Identities=17% Similarity=0.101 Sum_probs=152.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
.++|++|||||+|.||++++++|.++| ++|++.|+.. .. ..+... ...++..+.+|++|.+++.++++
T Consensus 3 l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~--------~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~ 72 (281)
T 3zv4_A 3 LTGEVALITGGASGLGRALVDRFVAEG-ARVAVLDKSA--------ERLRELEVA-HGGNAVGVVGDVRSLQDQKRAAER 72 (281)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHH-TBTTEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCH--------HHHHHHHHH-cCCcEEEEEcCCCCHHHHHHHHHH
Confidence 356899999999999999999999999 5999965432 20 000011 12468899999999988877765
Q ss_pred ------CCCEEEEcccCCCC------------CcchhhHHhhhHHHHHHHHHHHHHCC---CCEEEEeecccccccCCCC
Q 010005 84 ------GASTVFYVDATDLN------------TDDFYNCYMIIVQGAKNVVTACRECK---VRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 84 ------~~D~Vih~aa~~~~------------~~~~~~~~~~Nv~gt~~ll~aa~~~g---vkr~V~~SS~~vyg~~~~~ 142 (520)
++|++||+||.... ..+++..+++|+.++.++.+++...- -.++|++||...+.
T Consensus 73 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~----- 147 (281)
T 3zv4_A 73 CLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFY----- 147 (281)
T ss_dssp HHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTS-----
T ss_pred HHHhcCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhcc-----
Confidence 57999999997211 01256788999999999999985431 25999999987752
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCCC--CceEEEEecCccccCCCCCch---H-------HHHHHhcCCC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQLV---P-------LLVNLAKPGW 210 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~vyGp~~~~~~---~-------~l~~~~~~g~ 210 (520)
+..+...|+.||+..+.+.+.++.+. ++++.++.||.+..+...... . ........
T Consensus 148 ----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~-- 215 (281)
T 3zv4_A 148 ----------PNGGGPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKS-- 215 (281)
T ss_dssp ----------SSSSCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--CCCTTCC--------CCHHHHHHH--
T ss_pred ----------CCCCCchhHHHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCcccccccccccccccchhHHHHHHh--
Confidence 22345689999999999988776432 399999999999876432100 0 01111111
Q ss_pred ceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 211 TKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 211 ~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
......+...+|+|++++.++... ......|+.+++.++..
T Consensus 216 -------~~p~~r~~~pedvA~~v~fL~s~~--~~~~itG~~i~vdGG~~ 256 (281)
T 3zv4_A 216 -------VLPIGRMPALEEYTGAYVFFATRG--DSLPATGALLNYDGGMG 256 (281)
T ss_dssp -------TCTTSSCCCGGGGSHHHHHHHSTT--TSTTCSSCEEEESSSGG
T ss_pred -------cCCCCCCCCHHHHHHHHHHhhccc--ccccccCcEEEECCCCc
Confidence 122345778999999999887511 12347899999988753
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=161.73 Aligned_cols=212 Identities=18% Similarity=0.129 Sum_probs=148.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCC---CC--CCCCCcEEEEecCCCHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLP---DS--LSSGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~-~~~l~---~~--~~~~~v~~~~~Dl~d~~~l~~ 80 (520)
++++||||||+|.||.+++++|+++| ++|+++++... +.+. ...+. +. ....++..+.+|++|.+++.+
T Consensus 44 ~gk~vlVTGas~GIG~aia~~La~~G-a~Vvl~~r~~~----~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~ 118 (346)
T 3kvo_A 44 AGCTVFITGASRGIGKAIALKAAKDG-ANIVIAAKTAQ----PHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISA 118 (346)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEESCCS----CCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHH
T ss_pred CCCEEEEeCCChHHHHHHHHHHHHCC-CEEEEEECChh----hhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHH
Confidence 46899999999999999999999999 59999654321 0000 00000 00 012467889999999998888
Q ss_pred HHc-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCC
Q 010005 81 VLE-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 81 ~l~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~ 142 (520)
+++ ++|+|||+||.. ....+++..+++|+.|+.++++++. +.+..++|++||...+...
T Consensus 119 ~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~~--- 195 (346)
T 3kvo_A 119 AVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPV--- 195 (346)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCGG---
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCCC---
Confidence 776 799999999972 2234567889999999999999984 4456799999998765211
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC--CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCc
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI--DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~--~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~ 220 (520)
+..+...|+.+|+..+.+.+.++.+ .|+++.++.|+.+... .+.+..... ..
T Consensus 196 ----------~~~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~PG~~i~T-------~~~~~~~~~---------~~ 249 (346)
T 3kvo_A 196 ----------WFKQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTAIHT-------AAMDMLGGP---------GI 249 (346)
T ss_dssp ----------GTSSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECSBCBCC-------HHHHHHCC-----------C
T ss_pred ----------CCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcccc-------HHHHhhccc---------cc
Confidence 1234578999999999988877654 5899999999963322 122222111 12
Q ss_pred ccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeC
Q 010005 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~ 257 (520)
...+..++|+|++++.++.. .....|+.+ +.+
T Consensus 250 ~~r~~~pedvA~~v~~L~s~----~~~itG~~i-vdg 281 (346)
T 3kvo_A 250 ESQCRKVDIIADAAYSIFQK----PKSFTGNFV-IDE 281 (346)
T ss_dssp GGGCBCTHHHHHHHHHHHTS----CTTCCSCEE-EHH
T ss_pred cccCCCHHHHHHHHHHHHhc----CCCCCceEE-ECC
Confidence 34567899999999998872 234567655 554
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.3e-17 Score=158.83 Aligned_cols=210 Identities=14% Similarity=0.153 Sum_probs=145.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCCCC-----CCCCCcEEEEecCCCHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDS-----LSSGRAEYHQVDVRDISQIK 79 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~-~~~l~~~-----~~~~~v~~~~~Dl~d~~~l~ 79 (520)
.++|+++||||+|.||++++++|.++| ++|++.|+... +... ...+.+. ....++..+.+|++|.+++.
T Consensus 4 l~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~ 78 (274)
T 3e03_A 4 LSGKTLFITGASRGIGLAIALRAARDG-ANVAIAAKSAV----ANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVR 78 (274)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCCS----CCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeccch----hhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence 467899999999999999999999999 59999655431 0000 0000000 00246788999999999888
Q ss_pred HHHc-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCC
Q 010005 80 KVLE-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSH 141 (520)
Q Consensus 80 ~~l~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~ 141 (520)
++++ ++|++||+||.. ....+++..+++|+.++.++.+++.. .+..++|++||...+...
T Consensus 79 ~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~-- 156 (274)
T 3e03_A 79 AAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPA-- 156 (274)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHH--
T ss_pred HHHHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCC--
Confidence 7765 689999999972 22345677899999999999998754 456799999998765210
Q ss_pred CCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCC
Q 010005 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 142 ~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g 218 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.++.||.+..... . +. . .+
T Consensus 157 -----------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~T~~---~----~~-~---------~~ 208 (274)
T 3e03_A 157 -----------WWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATDA---I----NM-L---------PG 208 (274)
T ss_dssp -----------HHHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBCC------------------------C
T ss_pred -----------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccccch---h----hh-c---------cc
Confidence 0123568999999999988776543 589999999985332211 0 00 0 11
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceE
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAF 253 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~y 253 (520)
.....+...+|+|++++.++.. ......|+.+
T Consensus 209 ~~~~~~~~pedvA~~v~~l~s~---~~~~itG~~i 240 (274)
T 3e03_A 209 VDAAACRRPEIMADAAHAVLTR---EAAGFHGQFL 240 (274)
T ss_dssp CCGGGSBCTHHHHHHHHHHHTS---CCTTCCSCEE
T ss_pred ccccccCCHHHHHHHHHHHhCc---cccccCCeEE
Confidence 2233477899999999988861 1234567766
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-16 Score=150.74 Aligned_cols=213 Identities=12% Similarity=0.088 Sum_probs=154.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
++|++|||||++-||+++++.|.++| .+|++.|+.. + .+. .....++..+.+|++|+++++++++
T Consensus 10 ~GK~alVTGas~GIG~aia~~la~~G-a~Vv~~~~~~--------~--~~~-~~~~~~~~~~~~Dv~~~~~v~~~~~~~g 77 (242)
T 4b79_A 10 AGQQVLVTGGSSGIGAAIAMQFAELG-AEVVALGLDA--------D--GVH-APRHPRIRREELDITDSQRLQRLFEALP 77 (242)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESST--------T--STT-SCCCTTEEEEECCTTCHHHHHHHHHHCS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCH--------H--HHh-hhhcCCeEEEEecCCCHHHHHHHHHhcC
Confidence 57999999999999999999999999 5999966542 2 111 1234578899999999999988876
Q ss_pred CCCEEEEcccCC-----CCCcchhhHHhhhHHHHHHHHHHHHHC---CCCEEEEeecccccccCCCCCCCCCCCccCCCC
Q 010005 84 GASTVFYVDATD-----LNTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWK 155 (520)
Q Consensus 84 ~~D~Vih~aa~~-----~~~~~~~~~~~~Nv~gt~~ll~aa~~~---gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~ 155 (520)
+.|++||.||.. .+..+++..+++|+.|+..+.+++... +-.++|.+||..... +..
T Consensus 78 ~iDiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~---------------~~~ 142 (242)
T 4b79_A 78 RLDVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYSTF---------------GSA 142 (242)
T ss_dssp CCSEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGTS---------------CCS
T ss_pred CCCEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccccC---------------CCC
Confidence 589999999972 234567889999999999888877432 125899999987641 122
Q ss_pred CCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc--hHHHHHHhcCCCceEEecCCCcccccccHHHH
Q 010005 156 FQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGENMSDFTYVENV 230 (520)
Q Consensus 156 p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~--~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dv 230 (520)
....|+.||...+.+.+.++.+ +|+++.++-||.+-.|..... -+...+...+..| +.-+...+|+
T Consensus 143 ~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~~~~~~~~~~~~~~~P---------lgR~g~peei 213 (242)
T 4b79_A 143 DRPAYSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKADVEATRRIMQRTP---------LARWGEAPEV 213 (242)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC-----CCCHHHHHHHHHTCT---------TCSCBCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhcccCCHHHHHHHHhcCC---------CCCCcCHHHH
Confidence 3568999999999887766433 689999999999987743221 1222333332222 2234568999
Q ss_pred HHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 231 AHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 231 a~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
|.+++.++- +......|+.+.+.++
T Consensus 214 A~~v~fLaS---d~a~~iTG~~l~VDGG 238 (242)
T 4b79_A 214 ASAAAFLCG---PGASFVTGAVLAVDGG 238 (242)
T ss_dssp HHHHHHHTS---GGGTTCCSCEEEESTT
T ss_pred HHHHHHHhC---chhcCccCceEEECcc
Confidence 999998774 1134578999999876
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.1e-17 Score=160.14 Aligned_cols=203 Identities=14% Similarity=0.092 Sum_probs=138.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
+++++|||||+|.||++++++|.++| ++|+++|+.... +. .....+... ....+..+.+|++|.+++.++++
T Consensus 32 ~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~-~~--~~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~ 106 (281)
T 4dry_A 32 EGRIALVTGGGTGVGRGIAQALSAEG-YSVVITGRRPDV-LD--AAAGEIGGR-TGNIVRAVVCDVGDPDQVAALFAAVR 106 (281)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HH--HHHHHHHHH-HSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH-HH--HHHHHHHhc-CCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 599995543210 00 000000000 01235889999999998887775
Q ss_pred ----CCCEEEEcccCC--------CCCcchhhHHhhhHHHHHHHHHHHHH----CC--CCEEEEeecccccccCCCCCCC
Q 010005 84 ----GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTACRE----CK--VRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 ----~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~g--vkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|++||+||.. ....+++..+++|+.|+.++.+++.. .+ ..++|++||...+.
T Consensus 107 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~-------- 178 (281)
T 4dry_A 107 AEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQT-------- 178 (281)
T ss_dssp HHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTC--------
T ss_pred HHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCC--------
Confidence 579999999972 12345677999999998888887654 32 45999999987652
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+..+..... ..+ ...........
T Consensus 179 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~--------~~~--~~~~~~~~~~~ 241 (281)
T 4dry_A 179 -------PRPNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTARM--------STG--VLQANGEVAAE 241 (281)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC---------------CE--EECTTSCEEEC
T ss_pred -------CCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhhhhh--------cch--hhhhhhccccc
Confidence 2234678999999999998877643 689999999999987642211 000 00000011223
Q ss_pred ccccHHHHHHHHHHHHH
Q 010005 223 DFTYVENVAHAHVCAAE 239 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~ 239 (520)
.++.++|+|++++.++.
T Consensus 242 ~~~~pedvA~~v~fL~s 258 (281)
T 4dry_A 242 PTIPIEHIAEAVVYMAS 258 (281)
T ss_dssp CCBCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 47789999999999988
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=163.87 Aligned_cols=218 Identities=11% Similarity=0.002 Sum_probs=151.3
Q ss_pred CCCCeEEEEcC--CChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 6 AIPRTCVVLNG--RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGa--tGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
.++|+++|||| +|.||+++++.|.++| ++|++.|+.... ....+.+.+ ..++.++.+|++|++++.++++
T Consensus 5 l~~k~vlVTGa~~s~gIG~aia~~l~~~G-~~V~~~~r~~~~------~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~ 76 (269)
T 2h7i_A 5 LDGKRILVSGIITDSSIAFHIARVAQEQG-AQLVLTGFDRLR------LIQRITDRL-PAKAPLLELDVQNEEHLASLAG 76 (269)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTT-CEEEEEECSCHH------HHHHHHTTS-SSCCCEEECCTTCHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCchHHHHHHHHHHCC-CEEEEEecChHH------HHHHHHHhc-CCCceEEEccCCCHHHHHHHHH
Confidence 45789999999 9999999999999999 599986543210 000111111 2357889999999998888776
Q ss_pred ----------CCCEEEEcccCCC------------CCcchhhHHhhhHHHHHHHHHHHHHCC--CCEEEEeecccccccC
Q 010005 84 ----------GASTVFYVDATDL------------NTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDG 139 (520)
Q Consensus 84 ----------~~D~Vih~aa~~~------------~~~~~~~~~~~Nv~gt~~ll~aa~~~g--vkr~V~~SS~~vyg~~ 139 (520)
++|++||+||... ...++...+++|+.++.++.+++...- -.++|++||...+
T Consensus 77 ~~~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~--- 153 (269)
T 2h7i_A 77 RVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSR--- 153 (269)
T ss_dssp HHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSS---
T ss_pred HHHHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCcccc---
Confidence 7899999999632 223456789999999999999997641 2489999987643
Q ss_pred CCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc-----hH-------HHHH
Q 010005 140 SHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL-----VP-------LLVN 204 (520)
Q Consensus 140 ~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~-----~~-------~l~~ 204 (520)
+..+...|+.+|+..+.+.+.++.+ +|+++.+++||.+..+..... -. .+.+
T Consensus 154 -------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~ 220 (269)
T 2h7i_A 154 -------------AMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEE 220 (269)
T ss_dssp -------------CCTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred -------------ccCchHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccchhhhccccccchhhHHHHHHHHHH
Confidence 1123568999999999988876543 589999999998875421000 00 0011
Q ss_pred HhcCCCceEEecCCCccc-ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 205 LAKPGWTKFIIGSGENMS-DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 205 ~~~~g~~~~i~g~g~~~~-~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..... .+.. .+...+|+|++++.++. .......|+.+.+.++.
T Consensus 221 ~~~~~---------~p~~rr~~~p~dvA~~v~~L~s---~~~~~itG~~i~vdGG~ 264 (269)
T 2h7i_A 221 GWDQR---------APIGWNMKDATPVAKTVCALLS---DWLPATTGDIIYADGGA 264 (269)
T ss_dssp HHHHH---------CTTCCCTTCCHHHHHHHHHHHS---SSCTTCCSEEEEESTTG
T ss_pred hhhcc---------CCcccCCCCHHHHHHHHHHHhC---chhccCcceEEEecCCe
Confidence 11110 1111 36678999999998875 11245678999998764
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.1e-16 Score=150.66 Aligned_cols=209 Identities=14% Similarity=0.144 Sum_probs=152.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
|+|+||||||++-||+++++.|.++| .+|.+.|+.... . ..+.+ ...++..+.+|++|+++++++++
T Consensus 1 MnK~vlVTGas~GIG~aia~~la~~G-a~V~~~~~~~~~----~---~~~~~--~~~~~~~~~~Dv~~~~~v~~~v~~~~ 70 (247)
T 3ged_A 1 MNRGVIVTGGGHGIGKQICLDFLEAG-DKVCFIDIDEKR----S---ADFAK--ERPNLFYFHGDVADPLTLKKFVEYAM 70 (247)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHH----H---HHHHT--TCTTEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCC-CEEEEEeCCHHH----H---HHHHH--hcCCEEEEEecCCCHHHHHHHHHHHH
Confidence 35899999999999999999999999 699996654310 0 01111 23467889999999988877664
Q ss_pred ----CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCCCCC
Q 010005 84 ----GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 ----~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
+.|++||.||. .....+++..+++|+.++..+.+++.. .+ .++|++||...+.
T Consensus 71 ~~~g~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~-G~IInisS~~~~~----------- 138 (247)
T 3ged_A 71 EKLQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNK-GRIINIASTRAFQ----------- 138 (247)
T ss_dssp HHHSCCCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGTS-----------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CcEEEEeeccccc-----------
Confidence 58999999987 234467888999999999988887753 34 6899999987651
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcCC--CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccccccc
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI--DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY 226 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~--~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~ 226 (520)
+......|+.||+..+.+.+.++.+ .|+++.++-||.+-.+............ .| ..-+..
T Consensus 139 ----~~~~~~~Y~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~~~~~~~~~~~~~----~P---------l~R~g~ 201 (247)
T 3ged_A 139 ----SEPDSEAYASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVTEQQEFTQEDCAA----IP---------AGKVGT 201 (247)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCCC---CCHHHHHT----ST---------TSSCBC
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCCCcHHHHHHHHhc----CC---------CCCCcC
Confidence 1123468999999998887765432 3799999999999766544433333221 11 123456
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 227 v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.+|+|.+++.++. ..-..|+++.+.++-
T Consensus 202 pediA~~v~fL~s-----~~~iTG~~i~VDGG~ 229 (247)
T 3ged_A 202 PKDISNMVLFLCQ-----QDFITGETIIVDGGM 229 (247)
T ss_dssp HHHHHHHHHHHHH-----CSSCCSCEEEESTTG
T ss_pred HHHHHHHHHHHHh-----CCCCCCCeEEECcCH
Confidence 8999999999887 357889999998864
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.7e-17 Score=156.50 Aligned_cols=205 Identities=14% Similarity=0.078 Sum_probs=136.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
++++++|||||+|+||+++++.|+++| ++|+++|+.. ... ...+.+ ...++..+.+|++|.+++.+++
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 73 (260)
T 2qq5_A 3 MNGQVCVVTGASRGIGRGIALQLCKAG-ATVYITGRHL--------DTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLF 73 (260)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHH
Confidence 456899999999999999999999999 5999855432 100 000000 0235788999999998877665
Q ss_pred c--------CCCEEEEcccC--------------CCCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeeccccc
Q 010005 83 E--------GASTVFYVDAT--------------DLNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVV 136 (520)
Q Consensus 83 ~--------~~D~Vih~aa~--------------~~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vy 136 (520)
+ ++|++||+||. .....++...+++|+.++.++.+++. +.+..++|++||...+
T Consensus 74 ~~~~~~~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 153 (260)
T 2qq5_A 74 EQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSL 153 (260)
T ss_dssp HHHHHHHTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGT
T ss_pred HHHHHhcCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhc
Confidence 3 47999999941 12334567889999999988777664 4566799999998775
Q ss_pred ccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceE
Q 010005 137 FDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKF 213 (520)
Q Consensus 137 g~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~ 213 (520)
. ..+...|+.||+..|.+.+.++. .+|+++++++||.+..+........- ...... .
T Consensus 154 ~----------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~--~~~~~~--~ 213 (260)
T 2qq5_A 154 Q----------------YMFNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKEHMAKE--EVLQDP--V 213 (260)
T ss_dssp S----------------CCSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTTC------------------
T ss_pred C----------------CCCCCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHHHHHhhccc--cccchh--H
Confidence 2 12346899999999999887753 36899999999999887532211100 000000 0
Q ss_pred EecCCCcccccccHHHHHHHHHHHHH
Q 010005 214 IIGSGENMSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 214 i~g~g~~~~~~i~v~Dva~ai~~~~~ 239 (520)
..........+...+|+|++++.++.
T Consensus 214 ~~~~~~~~~~~~~pe~va~~v~~l~s 239 (260)
T 2qq5_A 214 LKQFKSAFSSAETTELSGKCVVALAT 239 (260)
T ss_dssp --------CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhccCCCHHHHHHHHHHHhc
Confidence 00000011123578999999998876
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-16 Score=169.74 Aligned_cols=196 Identities=21% Similarity=0.132 Sum_probs=143.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC----CCCCCC--CCCCcEEEEecCCCHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS----LLPDSL--SSGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~----~l~~~~--~~~~v~~~~~Dl~d~~~l~~ 80 (520)
++++||||||+|+||.+++++|.++|+.+|++++ |+.... .+.+.+ ...++.++.+|++|.+++.+
T Consensus 225 ~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~--------R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~ 296 (486)
T 2fr1_A 225 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVS--------RSGPDADGAGELVAELEALGARTTVAACDVTDRESVRE 296 (486)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEE--------SSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc--------CCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHH
Confidence 4689999999999999999999999954588844 433210 000001 12467889999999999999
Q ss_pred HHcCC------CEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCC
Q 010005 81 VLEGA------STVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 81 ~l~~~------D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
+++++ |+|||+||... ...++...+++|+.|+.++.+++++.+.++||++||.+.+.
T Consensus 297 ~~~~i~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS~a~~~---------- 366 (486)
T 2fr1_A 297 LLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAF---------- 366 (486)
T ss_dssp HHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHT----------
T ss_pred HHHHHHhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcChHhcC----------
Confidence 99865 99999999722 22355678889999999999999999899999999986642
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccH
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v 227 (520)
.......|+.+|...+.+...+.. .|+++++++|+.+++++... . ... ... ......+++.
T Consensus 367 -----g~~g~~~Yaaaka~l~~la~~~~~-~gi~v~~i~pG~~~~~gm~~---~----~~~----~~~--~~~g~~~i~~ 427 (486)
T 2fr1_A 367 -----GAPGLGGYAPGNAYLDGLAQQRRS-DGLPATAVAWGTWAGSGMAE---G----PVA----DRF--RRHGVIEMPP 427 (486)
T ss_dssp -----CCTTCTTTHHHHHHHHHHHHHHHH-TTCCCEEEEECCBC-----------------------C--TTTTEECBCH
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHh-cCCeEEEEECCeeCCCcccc---h----hHH----HHH--HhcCCCCCCH
Confidence 112346899999999998877654 69999999999998764211 0 000 000 1122467899
Q ss_pred HHHHHHHHHHHH
Q 010005 228 ENVAHAHVCAAE 239 (520)
Q Consensus 228 ~Dva~ai~~~~~ 239 (520)
+|+++++..+++
T Consensus 428 e~~a~~l~~~l~ 439 (486)
T 2fr1_A 428 ETACRALQNALD 439 (486)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999988
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.70 E-value=4.7e-17 Score=170.73 Aligned_cols=217 Identities=12% Similarity=0.027 Sum_probs=151.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
+++++|||||+|.||.+++++|.++| .+|+++|+. .....+.+.....++.++.+|++|.+++.++++
T Consensus 212 ~gk~~LVTGgsgGIG~aiA~~La~~G-a~Vvl~~r~--------~~~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~ 282 (454)
T 3u0b_A 212 DGKVAVVTGAARGIGATIAEVFARDG-ATVVAIDVD--------GAAEDLKRVADKVGGTALTLDVTADDAVDKITAHVT 282 (454)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEECG--------GGHHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHH
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHCC-CEEEEEeCC--------ccHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 589885542 211111111112246789999999988887765
Q ss_pred ----C-CCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHC----CCCEEEEeecccccccCCCCCCCCC
Q 010005 84 ----G-ASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 ----~-~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~----gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
+ +|+|||+||.. ....+++..+++|+.|+.++.+++... +..+||++||...+.
T Consensus 283 ~~~g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~---------- 352 (454)
T 3u0b_A 283 EHHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIA---------- 352 (454)
T ss_dssp HHSTTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHH----------
T ss_pred HHcCCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCC----------
Confidence 4 89999999982 233456788999999999999999876 567999999987752
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (520)
+......|+.+|+..+.+.+.++. .+|++++++.||.+..+............... ......+
T Consensus 353 -----g~~g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~---------~~~l~r~ 418 (454)
T 3u0b_A 353 -----GNRGQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEAIPLATREVGRR---------LNSLFQG 418 (454)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC----------CHHHHH---------SBTTSSC
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhhcchhhHHHHHh---------hccccCC
Confidence 123456899999977777666543 36999999999999876432211100000000 0122345
Q ss_pred ccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 225 i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
...+|+|+++..++.. ......|++++++++.
T Consensus 419 g~pedvA~~v~fL~s~---~a~~itG~~i~vdGG~ 450 (454)
T 3u0b_A 419 GQPVDVAELIAYFASP---ASNAVTGNTIRVCGQA 450 (454)
T ss_dssp BCHHHHHHHHHHHHCG---GGTTCCSCEEEESSSB
T ss_pred CCHHHHHHHHHHHhCC---ccCCCCCcEEEECCcc
Confidence 6789999999988751 1345789999998764
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-17 Score=160.55 Aligned_cols=223 Identities=13% Similarity=0.090 Sum_probs=147.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHh---cCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLE---LGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~---~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++|++|||||+|.||++++++|.+ +| ++|+++|+.... +. .....+.......++.++.+|++|++++.+++
T Consensus 4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G-~~V~~~~r~~~~-~~--~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~ 79 (259)
T 1oaa_A 4 LGCAVCVLTGASRGFGRALAPQLARLLSPG-SVMLVSARSESM-LR--QLKEELGAQQPDLKVVLAAADLGTEAGVQRLL 79 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTT-CEEEEEESCHHH-HH--HHHHHHHHHCTTSEEEEEECCTTSHHHHHHHH
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHhhcCC-CeEEEEeCCHHH-HH--HHHHHHHhhCCCCeEEEEecCCCCHHHHHHHH
Confidence 4568999999999999999999999 89 599995543210 00 00000000001235788999999998887766
Q ss_pred c---------CCC--EEEEcccCC----------CCCcchhhHHhhhHHHHHHHHHHHHHC------CCCEEEEeecccc
Q 010005 83 E---------GAS--TVFYVDATD----------LNTDDFYNCYMIIVQGAKNVVTACREC------KVRRLVYNSTADV 135 (520)
Q Consensus 83 ~---------~~D--~Vih~aa~~----------~~~~~~~~~~~~Nv~gt~~ll~aa~~~------gvkr~V~~SS~~v 135 (520)
+ +.| ++||+||.. ....+++..+++|+.|+.++.+++... +..++|++||...
T Consensus 80 ~~~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~ 159 (259)
T 1oaa_A 80 SAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCA 159 (259)
T ss_dssp HHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGG
T ss_pred HHHHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchh
Confidence 3 358 999999972 123456779999999999999999754 2357999999987
Q ss_pred cccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCCC-CceEEEEecCccccCCCCCchHHHHHHhcCCCceEE
Q 010005 136 VFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFI 214 (520)
Q Consensus 136 yg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i 214 (520)
+. +..+...|+.||+..|.+.+.++.+. ++++.++.||.+-.+. ...+............
T Consensus 160 ~~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~i~vn~v~PG~v~T~~----~~~~~~~~~~~~~~~~ 220 (259)
T 1oaa_A 160 LQ---------------PYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDM----QQLARETSKDPELRSK 220 (259)
T ss_dssp TS---------------CCTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHH----HHHHHHHCSCHHHHHH
T ss_pred cC---------------CCCCccHHHHHHHHHHHHHHHHHhhCCCceEEEecCCCcCcch----HHHHhhccCChhHHHH
Confidence 62 22345689999999999988886554 4999999999875431 1111100000000000
Q ss_pred ecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEE
Q 010005 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFI 255 (520)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni 255 (520)
..+..+...+..++|+|++++.++.. .....|+.+++
T Consensus 221 ~~~~~p~~~~~~p~dvA~~v~~l~~~----~~~itG~~i~v 257 (259)
T 1oaa_A 221 LQKLKSDGALVDCGTSAQKLLGLLQK----DTFQSGAHVDF 257 (259)
T ss_dssp HHHHHHTTCSBCHHHHHHHHHHHHHH----CCSCTTEEEET
T ss_pred HHHhhhcCCcCCHHHHHHHHHHHHhh----ccccCCcEEec
Confidence 00001123467899999999988862 23456666654
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-16 Score=160.84 Aligned_cols=214 Identities=14% Similarity=0.113 Sum_probs=145.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccc-cCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQ-LDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~-l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
.++|+++||||+|+||+++++.|.++| ++|++.|+..... ..|+..+. ...+.+...+ ....+|+.|.+++.++++
T Consensus 7 l~gk~~lVTGas~GIG~~~a~~La~~G-a~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~-~~~~~D~~~~~~~~~~~~ 84 (319)
T 1gz6_A 7 FDGRVVLVTGAGGGLGRAYALAFAERG-ALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG-GKAVANYDSVEAGEKLVK 84 (319)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT-CEEEEECCCGGGHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEcCCcccccccCCHHHHHHHHHHHHhhC-CeEEEeCCCHHHHHHHHH
Confidence 456899999999999999999999999 5999977642110 12222100 0000010111 124589999876665543
Q ss_pred -------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCC
Q 010005 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|++||+||... ...+++..+++|+.|+.++.+++ ++.+..|+|++||...+.
T Consensus 85 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~~-------- 156 (319)
T 1gz6_A 85 TALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIY-------- 156 (319)
T ss_dssp HHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH--------
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcc--------
Confidence 6899999999721 23456789999999999988887 445667999999975431
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
+..+...|+.||+..+.+.+.++.+ +|+++.+++|+.+ .+......+ ....
T Consensus 157 -------~~~~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~-t~~~~~~~~------------------~~~~ 210 (319)
T 1gz6_A 157 -------GNFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-SRMTETVMP------------------EDLV 210 (319)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC-STTTGGGSC------------------HHHH
T ss_pred -------CCCCCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc-cccccccCC------------------hhhh
Confidence 1123568999999999988877543 5899999999976 321111000 1123
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.++.++|+|.+++.++.. .....|+.|+++++.
T Consensus 211 ~~~~p~dvA~~~~~l~s~----~~~~tG~~~~v~GG~ 243 (319)
T 1gz6_A 211 EALKPEYVAPLVLWLCHE----SCEENGGLFEVGAGW 243 (319)
T ss_dssp HHSCGGGTHHHHHHHTST----TCCCCSCEEEEETTE
T ss_pred ccCCHHHHHHHHHHHhCc----hhhcCCCEEEECCCe
Confidence 457899999999887751 124578899998764
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.8e-16 Score=165.27 Aligned_cols=218 Identities=15% Similarity=0.078 Sum_probs=153.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC----CCCCCC--CCCCcEEEEecCCCHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS----LLPDSL--SSGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~----~l~~~~--~~~~v~~~~~Dl~d~~~l~~ 80 (520)
++++||||||+|+||.+++++|.++|+.+|++++ |+.... .+.+.+ ...++.++.+|++|.+++.+
T Consensus 258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~--------R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~ 329 (511)
T 2z5l_A 258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTS--------RRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAA 329 (511)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEE--------SSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEe--------cCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHH
Confidence 4689999999999999999999999954688844 432110 000111 12357889999999999999
Q ss_pred HHcC--CCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHC-CCCEEEEeecccccccCCCCCCCCCCCc
Q 010005 81 VLEG--ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGSHDIHNGDETL 150 (520)
Q Consensus 81 ~l~~--~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~-gvkr~V~~SS~~vyg~~~~~~~~~~E~~ 150 (520)
++++ +|+|||+||... ....+...+++|+.|+.++.+++... +.++||++||...+.
T Consensus 330 ~~~~~~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~------------- 396 (511)
T 2z5l_A 330 LVTAYPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTGTW------------- 396 (511)
T ss_dssp HHHHSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTT-------------
T ss_pred HHhcCCCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHhcC-------------
Confidence 9975 999999999722 22345678899999999999999887 788999999985531
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHH
Q 010005 151 TCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENV 230 (520)
Q Consensus 151 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dv 230 (520)
.......|+.+|...|.+.+.+.. .|+++++++|+.+-+.+...-.. ..... ......++.+|+
T Consensus 397 --g~~g~~~YaaaKa~ld~la~~~~~-~gi~v~sv~pG~~~~tgm~~~~~--~~~~~-----------~~g~~~l~~e~~ 460 (511)
T 2z5l_A 397 --GNAGQGAYAAANAALDALAERRRA-AGLPATSVAWGLWGGGGMAAGAG--EESLS-----------RRGLRAMDPDAA 460 (511)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHHT-TTCCCEEEEECCBCSTTCCCCHH--HHHHH-----------HHTBCCBCHHHH
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHHH-cCCcEEEEECCcccCCccccccc--HHHHH-----------hcCCCCCCHHHH
Confidence 112346899999999999987754 79999999999884333221111 11111 011356889999
Q ss_pred HHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHH
Q 010005 231 AHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILE 272 (520)
Q Consensus 231 a~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~ 272 (520)
++++..+++. .. . .+.+. .+.+..+...+..
T Consensus 461 a~~l~~al~~-----~~--~-~v~v~---~~d~~~~~~~~~~ 491 (511)
T 2z5l_A 461 VDALLGAMGR-----ND--V-CVTVV---DVDWERFAPATNA 491 (511)
T ss_dssp HHHHHHHHHH-----TC--S-EEEEC---CBCHHHHHHHHHH
T ss_pred HHHHHHHHhC-----CC--C-EEEEE---eCCHHHHHhhhcc
Confidence 9999999872 11 1 23333 2556666665544
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-16 Score=157.42 Aligned_cols=203 Identities=19% Similarity=0.076 Sum_probs=137.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCH-HHHHHHHc--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI-SQIKKVLE-- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~-~~l~~~l~-- 83 (520)
++++||||||+|.||++++++|+++| ++|++.++.... . ......+.+ ....++.++.+|++|. +++.++++
T Consensus 11 ~~k~vlITGas~GIG~~~a~~L~~~G-~~V~~~~r~~~~-~--~~~~~~l~~-~~~~~~~~~~~Dl~~~~~~v~~~~~~~ 85 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGFEICKQLSSNG-IMVVLTCRDVTK-G--HEAVEKLKN-SNHENVVFHQLDVTDPIATMSSLADFI 85 (311)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCHHH-H--HHHHHHHHT-TTCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEecCCchHHHHHHHHHHHCC-CEEEEEeCCHHH-H--HHHHHHHHh-cCCCceEEEEccCCCcHHHHHHHHHHH
Confidence 46789999999999999999999999 599995543210 0 000001111 1124688999999997 76666554
Q ss_pred -----CCCEEEEcccCCC-------------------------------------CCcchhhHHhhhHHHHHHHHHHHH-
Q 010005 84 -----GASTVFYVDATDL-------------------------------------NTDDFYNCYMIIVQGAKNVVTACR- 120 (520)
Q Consensus 84 -----~~D~Vih~aa~~~-------------------------------------~~~~~~~~~~~Nv~gt~~ll~aa~- 120 (520)
++|+|||+||... ....++.++++|+.|+.++++++.
T Consensus 86 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~ 165 (311)
T 3o26_A 86 KTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIP 165 (311)
T ss_dssp HHHHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHhCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhH
Confidence 7999999999732 123345679999999999888875
Q ss_pred ---HCCCCEEEEeecccccccCCCC-----------------------------CCCCCCCccCCCCCCChHHHHHHHHH
Q 010005 121 ---ECKVRRLVYNSTADVVFDGSHD-----------------------------IHNGDETLTCCWKFQDLMCDLKAQAE 168 (520)
Q Consensus 121 ---~~gvkr~V~~SS~~vyg~~~~~-----------------------------~~~~~E~~~~~~~p~~~Y~~sK~~~E 168 (520)
+.+..|+|++||...+...... .....+... ...+...|+.||+..+
T Consensus 166 ~l~~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~SK~a~~ 244 (311)
T 3o26_A 166 LLQLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNG-WPSFGAAYTTSKACLN 244 (311)
T ss_dssp HHTTSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTT-CCSSCHHHHHHHHHHH
T ss_pred hhccCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhcccccccc-CcccchhhHHHHHHHH
Confidence 3456799999998765321100 000001100 1134568999999999
Q ss_pred HHHHHhcCCC-CceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHH
Q 010005 169 ALVLFANNID-GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 169 ~~~~~~~~~~-gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~ 239 (520)
.+.+.++.+. ++++.++.||.|..+.... ......++.++.++.++.
T Consensus 245 ~~~~~la~e~~~i~v~~v~PG~v~T~~~~~------------------------~~~~~~~~~a~~~~~~~~ 292 (311)
T 3o26_A 245 AYTRVLANKIPKFQVNCVCPGLVKTEMNYG------------------------IGNYTAEEGAEHVVRIAL 292 (311)
T ss_dssp HHHHHHHHHCTTSEEEEECCCSBCSGGGTT------------------------CCSBCHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCCceEEEecCCceecCCcCC------------------------CCCCCHHHHHHHHHHHHh
Confidence 9998887654 6999999999997653211 012458899999888775
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-16 Score=161.38 Aligned_cols=164 Identities=16% Similarity=0.117 Sum_probs=124.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC--------CCCCCcEEEEecCCCHHHHH
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--------LSSGRAEYHQVDVRDISQIK 79 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~--------~~~~~v~~~~~Dl~d~~~l~ 79 (520)
+++||||||+|+||++++++|+++| ++|+++++.. +... ...+. ....++..+.+|++|.+++.
T Consensus 2 ~k~vlVTGas~GIG~ala~~L~~~G-~~v~~v~r~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~ 73 (327)
T 1jtv_A 2 RTVVLITGCSSGIGLHLAVRLASDP-SQSFKVYATL-----RDLK--TQGRLWEAARALACPPGSLETLQLDVRDSKSVA 73 (327)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCT-TCCEEEEEEE-----SCGG--GTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CceEEEEeec-----CcHH--HHHHHHHHhhhccCCCCceEEEEecCCCHHHHH
Confidence 4789999999999999999999999 4777644321 1110 00000 01246889999999999999
Q ss_pred HHHcC-----CCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCC
Q 010005 80 KVLEG-----ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 80 ~~l~~-----~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~ 143 (520)
++++. +|++||+||... ...+++..+++|+.|+.++++++ ++.+..++|++||...+.
T Consensus 74 ~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~------ 147 (327)
T 1jtv_A 74 AARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLM------ 147 (327)
T ss_dssp HHHHTCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTS------
T ss_pred HHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCccccc------
Confidence 99875 899999998721 23456789999999999999986 445678999999987752
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCC
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPG 194 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~ 194 (520)
+......|+.||+..|.+.+.++. .+|+++++++|+.|..+.
T Consensus 148 ---------~~~~~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~ 192 (327)
T 1jtv_A 148 ---------GLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAF 192 (327)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC--
T ss_pred ---------CCCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChH
Confidence 112346899999999999887765 369999999999998764
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-15 Score=145.22 Aligned_cols=213 Identities=17% Similarity=0.141 Sum_probs=149.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
..++|++|||||++-||+++++.|.++| .+|.+.|+ +..+ .+ .....+++|++|++++.++++
T Consensus 8 ~L~GK~alVTGas~GIG~aia~~la~~G-a~V~~~~r--------~~~~-~~------~~~~~~~~Dv~~~~~v~~~~~~ 71 (261)
T 4h15_A 8 NLRGKRALITAGTKGAGAATVSLFLELG-AQVLTTAR--------ARPE-GL------PEELFVEADLTTKEGCAIVAEA 71 (261)
T ss_dssp CCTTCEEEESCCSSHHHHHHHHHHHHTT-CEEEEEES--------SCCT-TS------CTTTEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeccCcHHHHHHHHHHHHcC-CEEEEEEC--------Cchh-CC------CcEEEEEcCCCCHHHHHHHHHH
Confidence 3467999999999999999999999999 59998554 3221 11 123478999999988777664
Q ss_pred ------CCCEEEEcccCC---------CCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCC
Q 010005 84 ------GASTVFYVDATD---------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 84 ------~~D~Vih~aa~~---------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
+.|++||.||.. .+..+++..+++|+.++.++.+++. +.+-.++|++||......
T Consensus 72 ~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~~------ 145 (261)
T 4h15_A 72 TRQRLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVLP------ 145 (261)
T ss_dssp HHHHTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC------
T ss_pred HHHHcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhccC------
Confidence 589999999861 1234667899999999988887764 445568999999875410
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHH--------------HHHHhc
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPL--------------LVNLAK 207 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~--------------l~~~~~ 207 (520)
.......|+.||+..+.+.+.++.+ +|+++.++-||.+-.|........ ......
T Consensus 146 --------~~~~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (261)
T 4h15_A 146 --------LPESTTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEASVRLAERLAKQAGTDLEGGKKIIMDGL 217 (261)
T ss_dssp --------CTTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHT
T ss_pred --------CCCccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcchhhhhHHHHHhhccchhhHHHHHHHHh
Confidence 0112467999999999887766543 799999999998875422111111 111111
Q ss_pred CCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 208 PGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 208 ~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
... +..-+...+|+|++++.++- +......|+.+.+.++-
T Consensus 218 ~~~---------PlgR~g~peevA~~v~fLaS---~~a~~itG~~i~VDGG~ 257 (261)
T 4h15_A 218 GGI---------PLGRPAKPEEVANLIAFLAS---DRAASITGAEYTIDGGT 257 (261)
T ss_dssp TCC---------TTSSCBCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTC
T ss_pred cCC---------CCCCCcCHHHHHHHHHHHhC---chhcCccCcEEEECCcC
Confidence 221 22335669999999998774 11345789999998764
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.6e-16 Score=150.19 Aligned_cols=218 Identities=12% Similarity=0.067 Sum_probs=153.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCcEEEEecCCCHHHHHHH
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~--~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
.-++|+++||||++-||+++++.|.++| .+|.+.|+ +.+.. ...+.+ ...++..+.+|++|+++++++
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la~~G-a~Vvi~~~--------~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~ 76 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLAAAG-ARVILNDI--------RATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAA 76 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEECCS--------CHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEEC--------CHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHH
Confidence 3468999999999999999999999999 69999544 32210 000000 124678899999999988877
Q ss_pred Hc-------CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHHH-----CCCCEEEEeecccccccCCCC
Q 010005 82 LE-------GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACRE-----CKVRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 82 l~-------~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~~-----~gvkr~V~~SS~~vyg~~~~~ 142 (520)
++ +.|++||.||. .....+++..+++|+.|+..+.+++.. .+-.++|++||.....
T Consensus 77 ~~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~----- 151 (255)
T 4g81_D 77 FSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQA----- 151 (255)
T ss_dssp HHHHHHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-----
T ss_pred HHHHHHHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcC-----
Confidence 65 47999999998 234567888999999999998887632 3446899999987652
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch--HHHHHHhcCCCceEEecC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGS 217 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~--~~l~~~~~~g~~~~i~g~ 217 (520)
+......|+.||...+.+.+.++.+ +|+++.++-||.+..|...... +.+.+.+....|
T Consensus 152 ----------~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~P------ 215 (255)
T 4g81_D 152 ----------ARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTALIEDKQFDSWVKSSTP------ 215 (255)
T ss_dssp ----------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGHHHHTCHHHHHHHHHHST------
T ss_pred ----------CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchhhcccCCHHHHHHHHhCCC------
Confidence 1223467999999999887766433 7999999999999866422111 112222222222
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
..-+...+|+|.+++.++- +......|+.+.+.++
T Consensus 216 ---l~R~g~pediA~~v~fL~S---~~a~~iTG~~i~VDGG 250 (255)
T 4g81_D 216 ---SQRWGRPEELIGTAIFLSS---KASDYINGQIIYVDGG 250 (255)
T ss_dssp ---TCSCBCGGGGHHHHHHHHS---GGGTTCCSCEEEESTT
T ss_pred ---CCCCcCHHHHHHHHHHHhC---chhCCCcCCEEEECCC
Confidence 1224558999999998774 1134578999999876
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.1e-16 Score=150.26 Aligned_cols=214 Identities=14% Similarity=0.094 Sum_probs=140.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccC--CCCCC-CCCCCCCCCCCcEEEEecCCCHHHHH-HHH-
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLD--PSESN-SLLPDSLSSGRAEYHQVDVRDISQIK-KVL- 82 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~--r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~-~~l- 82 (520)
+|+++||||+|+||+++++.|+++| ++|+++| . |++.+ ..+.+.+ .+.+.. |..+.+.+. ++.
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~-------~~~r~~~~~~~~~~~~--~~~~~~--~~~~v~~~~~~~~~ 68 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDG-YTVVCHD-------ASFADAAERQRFESEN--PGTIAL--AEQKPERLVDATLQ 68 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTT-CEEEECC-------GGGGSHHHHHHHHHHS--TTEEEC--CCCCGGGHHHHHGG
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEec-------CCcCCHHHHHHHHHHh--CCCccc--CHHHHHHHHHHHHH
Confidence 3789999999999999999999999 5999941 2 33221 0011111 122222 444433332 222
Q ss_pred --cCCCEEEEcccCCCC----------CcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCC
Q 010005 83 --EGASTVFYVDATDLN----------TDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 83 --~~~D~Vih~aa~~~~----------~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
.++|++||+||.... ..+++..+++|+.++.++.+++. +.+..++|++||...+.
T Consensus 69 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~--------- 139 (244)
T 1zmo_A 69 HGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKK--------- 139 (244)
T ss_dssp GSSCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS---------
T ss_pred HcCCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCC---------
Confidence 258999999997321 23567789999999999998885 55667999999988762
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCC---CCch-HHHHHHhcCCCceEEecCCC
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGD---TQLV-PLLVNLAKPGWTKFIIGSGE 219 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~---~~~~-~~l~~~~~~g~~~~i~g~g~ 219 (520)
+..+...|+.||+..|.+.+.++.+ +|+++++++|+.+..+.. .... +......... ..
T Consensus 140 ------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~--------~~ 205 (244)
T 1zmo_A 140 ------PLAYNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFPTSDWENNPELRERVDR--------DV 205 (244)
T ss_dssp ------CCTTCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBCHHHHHHCHHHHHHHHH--------HC
T ss_pred ------CCCCchHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCcccccccccchHHHHHHHhc--------CC
Confidence 1234568999999999998876543 589999999999987643 1110 0111111100 01
Q ss_pred cccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
....+...+|+|++++.++.. ......|+.+.+.++.
T Consensus 206 p~~r~~~pe~vA~~v~~l~s~---~~~~~tG~~i~vdgG~ 242 (244)
T 1zmo_A 206 PLGRLGRPDEMGALITFLASR---RAAPIVGQFFAFTGGY 242 (244)
T ss_dssp TTCSCBCHHHHHHHHHHHHTT---TTGGGTTCEEEESTTC
T ss_pred CCCCCcCHHHHHHHHHHHcCc---cccCccCCEEEeCCCC
Confidence 122466799999999988861 1235678898887753
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-15 Score=149.68 Aligned_cols=225 Identities=8% Similarity=-0.008 Sum_probs=145.6
Q ss_pred CCCCeEEEEcCC--ChhHHHHHHHHHhcCCcEEEEecCCcccc---cCCCCC-CCCCCCCCCCCC----cEEEEec----
Q 010005 6 AIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQ---LDPSES-NSLLPDSLSSGR----AEYHQVD---- 71 (520)
Q Consensus 6 ~~~~~ILVtGat--GfIG~~lv~~L~~~g~~~V~~~D~~~~~~---l~r~~~-~~~l~~~~~~~~----v~~~~~D---- 71 (520)
.++|++|||||+ |.||+++++.|.++| ++|+++|+..... ..|+.. ..... .+.... ...+.+|
T Consensus 6 l~~k~~lVTGas~~~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 83 (297)
T 1d7o_A 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAG-AEILVGTWVPALNIFETSLRRGKFDQSR-VLPDGSLMEIKKVYPLDAVFD 83 (297)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHHTT-CEEEEEEEHHHHHHHHHHHHTTTTTGGG-BCTTSSBCCEEEEEEECTTCC
T ss_pred cCCCEEEEECCCCCCChHHHHHHHHHHCC-CeEEEeeccccchhhhhhhhhhHhhhhh-hhccccccccccccccceecc
Confidence 456899999999 999999999999999 5898866321000 000000 00111 111111 2333333
Q ss_pred ----CC----C--------HHHHHHHH-------cCCCEEEEcccCC---------CCCcchhhHHhhhHHHHHHHHHHH
Q 010005 72 ----VR----D--------ISQIKKVL-------EGASTVFYVDATD---------LNTDDFYNCYMIIVQGAKNVVTAC 119 (520)
Q Consensus 72 ----l~----d--------~~~l~~~l-------~~~D~Vih~aa~~---------~~~~~~~~~~~~Nv~gt~~ll~aa 119 (520)
+. | ++++.+++ .++|++||+||.. ....+++..+++|+.|+.++++++
T Consensus 84 ~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~ 163 (297)
T 1d7o_A 84 NPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHF 163 (297)
T ss_dssp SGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred chhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHH
Confidence 22 2 33344433 3689999999852 123456779999999999999999
Q ss_pred HHC--CCCEEEEeecccccccCCCCCCCCCCCccCCCCCC-ChHHHHHHHHHHHHHHhcCC----CCceEEEEecCcccc
Q 010005 120 REC--KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQ-DLMCDLKAQAEALVLFANNI----DGLLTCALRPSNVFG 192 (520)
Q Consensus 120 ~~~--gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~-~~Y~~sK~~~E~~~~~~~~~----~gi~~~ilRp~~vyG 192 (520)
... .-.++|++||...+.. .... ..|+.||+..+.+.+.++.+ +|+++.+++|+.+.+
T Consensus 164 ~~~m~~~g~iv~isS~~~~~~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~PG~v~T 228 (297)
T 1d7o_A 164 LPIMNPGGASISLTYIASERI---------------IPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGS 228 (297)
T ss_dssp GGGEEEEEEEEEEECGGGTSC---------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBC
T ss_pred HHHhccCceEEEEeccccccC---------------CCCcchHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEecccccc
Confidence 765 1258999999876521 1122 47999999999998887654 589999999999999
Q ss_pred CCCCCc--hHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 193 PGDTQL--VPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 193 p~~~~~--~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+..... .+.+........+ ...+..++|+|++++.++.. ......|+.+++.++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~p---------~~r~~~pedvA~~v~~l~s~---~~~~itG~~i~vdgG~ 285 (297)
T 1d7o_A 229 RAAKAIGFIDTMIEYSYNNAP---------IQKTLTADEVGNAAAFLVSP---LASAITGATIYVDNGL 285 (297)
T ss_dssp CCSSCCSHHHHHHHHHHHHSS---------SCCCBCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTG
T ss_pred chhhhccccHHHHHHhhccCC---------CCCCCCHHHHHHHHHHHhCc---cccCCCCCEEEECCCc
Confidence 865432 2333332222111 12356799999999887751 1234678999998874
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.4e-16 Score=149.75 Aligned_cols=217 Identities=16% Similarity=0.139 Sum_probs=152.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
-++|.+|||||++-||+.+++.|.++| .+|.+.|+.. +. ....+.+ ..+...+.+|++|+++++++++
T Consensus 27 L~gKvalVTGas~GIG~aiA~~la~~G-a~V~i~~r~~--------~~l~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~ 96 (273)
T 4fgs_A 27 LNAKIAVITGATSGIGLAAAKRFVAEG-ARVFITGRRK--------DVLDAAIAEI-GGGAVGIQADSANLAELDRLYEK 96 (273)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHH-CTTCEEEECCTTCHHHHHHHHHH
T ss_pred hCCCEEEEeCcCCHHHHHHHHHHHHCC-CEEEEEECCH--------HHHHHHHHHc-CCCeEEEEecCCCHHHHHHHHHH
Confidence 356899999999999999999999999 6999965432 20 0000111 2467889999999988887765
Q ss_pred ------CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCCCCCCCC
Q 010005 84 ------GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 ------~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
+.|++||.||. ..+..+++..+++|+.|+.++.+++... +-.++|.+||.....
T Consensus 97 ~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~----------- 165 (273)
T 4fgs_A 97 VKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGST----------- 165 (273)
T ss_dssp HHHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGS-----------
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhcc-----------
Confidence 57999999997 2344678889999999999999998654 124799999987641
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCch-------HHHHHHhcCCCceEEecCC
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV-------PLLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~-------~~l~~~~~~g~~~~i~g~g 218 (520)
+......|+.||+..+.+.+.++. .+|+++.++-||.+-.|...... ..+.+......|
T Consensus 166 ----~~~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~P------- 234 (273)
T 4fgs_A 166 ----GTPAFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVP------- 234 (273)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC---------CHHHHHHHHHHHHHHST-------
T ss_pred ----CCCCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhhccCchhhHHHHHHHHhcCC-------
Confidence 112346899999999988776643 36899999999999876432111 122222222222
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..-+...+|+|.+++.++- +......|+.+.+.++.
T Consensus 235 --lgR~g~peeiA~~v~FLaS---d~a~~iTG~~i~VDGG~ 270 (273)
T 4fgs_A 235 --MGRVGRAEEVAAAALFLAS---DDSSFVTGAELFVDGGS 270 (273)
T ss_dssp --TSSCBCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTT
T ss_pred --CCCCcCHHHHHHHHHHHhC---chhcCccCCeEeECcCh
Confidence 1124458999999998874 11345789999998764
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-15 Score=145.14 Aligned_cols=220 Identities=18% Similarity=0.158 Sum_probs=154.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC--CCCCCcEEEEecCCCHHHHHHHH
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~--~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
..++|.+|||||++-||+++++.|.++| .+|++.|+.. +.....+. ....+...+.+|++|++++++++
T Consensus 4 ~L~gKvalVTGas~GIG~aia~~la~~G-a~Vv~~~r~~--------~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v 74 (258)
T 4gkb_A 4 NLQDKVVIVTGGASGIGGAISMRLAEER-AIPVVFARHA--------PDGAFLDALAQRQPRATYLPVELQDDAQCRDAV 74 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSC--------CCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCc--------ccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHH
Confidence 4568999999999999999999999999 5888865432 21000000 01356889999999998877766
Q ss_pred c-------CCCEEEEcccC------CCCCcchhhHHhhhHHHHHHHHHHHHHC---CCCEEEEeecccccccCCCCCCCC
Q 010005 83 E-------GASTVFYVDAT------DLNTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 83 ~-------~~D~Vih~aa~------~~~~~~~~~~~~~Nv~gt~~ll~aa~~~---gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
+ +.|++||.||. .....+++..+++|+.++.++.+++..+ +-.++|++||...+.
T Consensus 75 ~~~~~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~--------- 145 (258)
T 4gkb_A 75 AQTIATFGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAVT--------- 145 (258)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHHH---------
T ss_pred HHHHHHhCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhcc---------
Confidence 4 58999999997 2234567889999999999988887432 125899999987652
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchH------HHHHHhcCCCceEEecC
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVP------LLVNLAKPGWTKFIIGS 217 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~------~l~~~~~~g~~~~i~g~ 217 (520)
+......|+.||+..+.+.+.++. .+|+++.++-||.+-.|....... ..........|+
T Consensus 146 ------~~~~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl----- 214 (258)
T 4gkb_A 146 ------GQGNTSGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAEIAAKVPL----- 214 (258)
T ss_dssp ------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC-----------CHHHHHHTTCTT-----
T ss_pred ------CCCCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccChHHHHHHHHhcCCC-----
Confidence 122346899999999988777653 379999999999998765432211 111111111110
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
| .-+...+|+|.+++.++- +......|+.+.+.++.
T Consensus 215 g---~R~g~peeiA~~v~fLaS---~~a~~iTG~~i~VDGG~ 250 (258)
T 4gkb_A 215 G---RRFTTPDEIADTAVFLLS---PRASHTTGEWLFVDGGY 250 (258)
T ss_dssp T---TSCBCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTT
T ss_pred C---CCCcCHHHHHHHHHHHhC---chhcCccCCeEEECCCc
Confidence 0 235568999999998774 11345789999998874
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.7e-15 Score=143.78 Aligned_cols=222 Identities=12% Similarity=0.002 Sum_probs=152.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++|.++||||++-||+++++.|.++| .+|.+.|+.... +.. ....+.. ...++..+.+|++|+++++++++
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la~~G-a~Vv~~~~~~~~-~~~--~~~~i~~--~g~~~~~~~~Dvt~~~~v~~~~~~~ 78 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFALND-SIVVAVELLEDR-LNQ--IVQELRG--MGKEVLGVKADVSKKKDVEEFVRRT 78 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHH--HHHHHHH--TTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHH-HHH--HHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHH
Confidence 467999999999999999999999999 599996654310 000 0001111 13467889999999998887764
Q ss_pred -----CCCEEEEcccCC--------CCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCCC
Q 010005 84 -----GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 -----~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
+.|++||.||.. .+..+++..+++|+.|+.++.+++.. .+-.++|++||.....
T Consensus 79 ~~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~--------- 149 (254)
T 4fn4_A 79 FETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIR--------- 149 (254)
T ss_dssp HHHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC---------
T ss_pred HHHcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcC---------
Confidence 589999999861 23356788999999999888887643 4556999999987641
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc---hHHHHHHhcCCCceEEecCCCc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL---VPLLVNLAKPGWTKFIIGSGEN 220 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~---~~~l~~~~~~g~~~~i~g~g~~ 220 (520)
+......|+.||+....+.+.++.+ +|+++.++-||.+-.|..... -....+......+ .
T Consensus 150 ------~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~--------~ 215 (254)
T 4fn4_A 150 ------GGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMS--------L 215 (254)
T ss_dssp ------SSSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSSCCHHHHHHHHHHHT--------T
T ss_pred ------CCCCChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccCCcHHHHHHHHhcCC--------C
Confidence 1223468999999998887766433 689999999999977642210 0111111110000 0
Q ss_pred ccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..-+...+|+|.+++.++- +...-..|+.+.+.++-
T Consensus 216 ~~R~g~pediA~~v~fLaS---d~a~~iTG~~i~VDGG~ 251 (254)
T 4fn4_A 216 SSRLAEPEDIANVIVFLAS---DEASFVNGDAVVVDGGL 251 (254)
T ss_dssp CCCCBCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTG
T ss_pred CCCCcCHHHHHHHHHHHhC---chhcCCcCCEEEeCCCc
Confidence 1123458999999998874 11345789999998764
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.62 E-value=4.6e-15 Score=144.01 Aligned_cols=223 Identities=14% Similarity=0.048 Sum_probs=153.1
Q ss_pred CCCCCeEEEEcCCC--hhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHH
Q 010005 5 EAIPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 5 ~~~~~~ILVtGatG--fIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
..++|+++||||+| -||.++++.|.++| .+|++.|+.... ........+.....++..+.+|++|++++.+++
T Consensus 3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~G-a~Vvi~~r~~~~----~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 77 (256)
T 4fs3_A 3 NLENKTYVIMGIANKRSIAFGVAKVLDQLG-AKLVFTYRKERS----RKELEKLLEQLNQPEAHLYQIDVQSDEEVINGF 77 (256)
T ss_dssp CCTTCEEEEECCCSTTCHHHHHHHHHHHTT-CEEEEEESSGGG----HHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCC-CEEEEEECCHHH----HHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHH
Confidence 34689999999987 79999999999999 599996543210 000000111123356889999999998887766
Q ss_pred c-------CCCEEEEcccCC-----------CCCcchhhHHhhhHHHHHHHHHHHHHCC--CCEEEEeecccccccCCCC
Q 010005 83 E-------GASTVFYVDATD-----------LNTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~-----------~~~~~~~~~~~~Nv~gt~~ll~aa~~~g--vkr~V~~SS~~vyg~~~~~ 142 (520)
+ ++|++||.||.. ....++...+++|+.++..+.+++...- -.++|++||.....
T Consensus 78 ~~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~----- 152 (256)
T 4fs3_A 78 EQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEF----- 152 (256)
T ss_dssp HHHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTS-----
T ss_pred HHHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEecccccc-----
Confidence 4 589999999862 1112345567899999998888886542 24899999986541
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCC--chHHHHHHhcCCCceEEecC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKPGWTKFIIGS 217 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~--~~~~l~~~~~~g~~~~i~g~ 217 (520)
+......|+.||+..+.+.+.++.+ +|+++.++-||.+-.+.... -.+...+......|.
T Consensus 153 ----------~~~~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl----- 217 (256)
T 4fs3_A 153 ----------AVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIKERAPL----- 217 (256)
T ss_dssp ----------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHSTT-----
T ss_pred ----------CcccchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhccCCHHHHHHHHhcCCC-----
Confidence 2234568999999999887766543 68999999999987764332 123333333332221
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.-+...+|+|++++.++- +......|+++.+.++-
T Consensus 218 ----~R~g~peevA~~v~fL~S---d~a~~iTG~~i~VDGG~ 252 (256)
T 4fs3_A 218 ----KRNVDQVEVGKTAAYLLS---DLSSGVTGENIHVDSGF 252 (256)
T ss_dssp ----SSCCCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTG
T ss_pred ----CCCcCHHHHHHHHHHHhC---chhcCccCCEEEECcCH
Confidence 224458999999998774 11345789999998763
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.3e-15 Score=142.93 Aligned_cols=219 Identities=13% Similarity=0.067 Sum_probs=154.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
-++|+++||||++-||..+++.|.++| .+|.+.|+... ......+.+ ...++..+.+|++|+++++++++
T Consensus 7 L~GKvalVTGas~GIG~aiA~~la~~G-a~Vvi~~r~~~-----~~~~~~~~~--~g~~~~~~~~Dv~d~~~v~~~~~~g 78 (247)
T 4hp8_A 7 LEGRKALVTGANTGLGQAIAVGLAAAG-AEVVCAARRAP-----DETLDIIAK--DGGNASALLIDFADPLAAKDSFTDA 78 (247)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCC-----HHHHHHHHH--TTCCEEEEECCTTSTTTTTTSSTTT
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHcC-CEEEEEeCCcH-----HHHHHHHHH--hCCcEEEEEccCCCHHHHHHHHHhC
Confidence 467999999999999999999999999 59998665321 000000111 23467889999999988877775
Q ss_pred CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHH----HCC-CCEEEEeecccccccCCCCCCCCCCCcc
Q 010005 84 GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACR----ECK-VRRLVYNSTADVVFDGSHDIHNGDETLT 151 (520)
Q Consensus 84 ~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~----~~g-vkr~V~~SS~~vyg~~~~~~~~~~E~~~ 151 (520)
+.|++||.||. .....+++..+++|+.|+..+.+++. +.+ -.++|.+||.....
T Consensus 79 ~iDiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~-------------- 144 (247)
T 4hp8_A 79 GFDILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQ-------------- 144 (247)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS--------------
T ss_pred CCCEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCC--------------
Confidence 48999999998 23456788899999999999888753 233 45899999987641
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCch--HHHHHHhcCCCceEEecCCCccccccc
Q 010005 152 CCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENMSDFTY 226 (520)
Q Consensus 152 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~--~~l~~~~~~g~~~~i~g~g~~~~~~i~ 226 (520)
+......|+.||+....+.+.++.+ +|+++.++-||.+-.|...... +...+......| ..-+-.
T Consensus 145 -g~~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~~~~~~~~~~~~~~~~~P---------lgR~g~ 214 (247)
T 4hp8_A 145 -GGIRVPSYTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNTEALRADAARNKAILERIP---------AGRWGH 214 (247)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHTTCT---------TSSCBC
T ss_pred -CCCCChHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchhhcccCHHHHHHHHhCCC---------CCCCcC
Confidence 1123458999999999887766433 7899999999999765422111 112222333222 223455
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 227 v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.+|+|.+++.++- +...-..|+.+.+.++-
T Consensus 215 peeiA~~v~fLaS---d~a~~iTG~~i~VDGG~ 244 (247)
T 4hp8_A 215 SEDIAGAAVFLSS---AAADYVHGAILNVDGGW 244 (247)
T ss_dssp THHHHHHHHHHTS---GGGTTCCSCEEEESTTG
T ss_pred HHHHHHHHHHHhC---chhcCCcCCeEEECccc
Confidence 8999999988764 11345789999998763
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-14 Score=151.76 Aligned_cols=197 Identities=16% Similarity=0.082 Sum_probs=142.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC----CCCCCC--CCCCcEEEEecCCCHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS----LLPDSL--SSGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~----~l~~~~--~~~~v~~~~~Dl~d~~~l~~ 80 (520)
+++++|||||+|.||.+++++|.++|..+|++. .|+.... .+.+.+ ...++.++.+|++|.+++.+
T Consensus 238 ~~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~--------~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~ 309 (496)
T 3mje_A 238 VHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLT--------SRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAA 309 (496)
T ss_dssp CCSEEEEETCSSHHHHHHHHHHHHTTCSEEEEE--------ESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHH
T ss_pred CCCEEEEECCCCchHHHHHHHHHHCCCcEEEEE--------eCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHH
Confidence 458999999999999999999999995477773 3432110 010111 12467889999999999999
Q ss_pred HHcC------CCEEEEcccCC-C-------CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCC
Q 010005 81 VLEG------ASTVFYVDATD-L-------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 81 ~l~~------~D~Vih~aa~~-~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
+++. +|+|||+||.. . ...++...+++|+.|+.++.+++...+.++||++||.+.+.
T Consensus 310 ~~~~i~~~g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~~iV~~SS~a~~~--------- 380 (496)
T 3mje_A 310 LLAELPEDAPLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLDAFVLFSSGAAVW--------- 380 (496)
T ss_dssp HHHTCCTTSCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCSEEEEEEEHHHHT---------
T ss_pred HHHHHHHhCCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHhcC---------
Confidence 9863 69999999973 1 22345778999999999999999999889999999987652
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccccccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY 226 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~ 226 (520)
.......|+.+|...+.+.+.+.. .|++++++.||.+.+++...- ........... ...+.
T Consensus 381 ------g~~g~~~YaAaKa~ldala~~~~~-~Gi~v~sV~pG~w~~~gm~~~-~~~~~~l~~~g-----------~~~l~ 441 (496)
T 3mje_A 381 ------GSGGQPGYAAANAYLDALAEHRRS-LGLTASSVAWGTWGEVGMATD-PEVHDRLVRQG-----------VLAME 441 (496)
T ss_dssp ------TCTTCHHHHHHHHHHHHHHHHHHH-TTCCCEEEEECEESSSCC-------CHHHHHTT-----------EEEEC
T ss_pred ------CCCCcHHHHHHHHHHHHHHHHHHh-cCCeEEEEECCcccCCccccC-hHHHHHHHhcC-----------CCCCC
Confidence 112356899999999999887664 799999999999887654211 00111111111 12346
Q ss_pred HHHHHHHHHHHHH
Q 010005 227 VENVAHAHVCAAE 239 (520)
Q Consensus 227 v~Dva~ai~~~~~ 239 (520)
.++.++++..++.
T Consensus 442 pe~~~~~l~~~l~ 454 (496)
T 3mje_A 442 PEHALGALDQMLE 454 (496)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 8999999998887
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=143.97 Aligned_cols=231 Identities=13% Similarity=0.014 Sum_probs=141.6
Q ss_pred CCCCCCCCCeEEEEcC--CChhHHHHHHHHHhcCCcEEEEecCCcc-------cccCCCCCCCCCCCCCCCCCcEEEEe-
Q 010005 1 MPFDEAIPRTCVVLNG--RGFVGRSLVLRLLELGKCIVRVTDSTQS-------LQLDPSESNSLLPDSLSSGRAEYHQV- 70 (520)
Q Consensus 1 m~~~~~~~~~ILVtGa--tGfIG~~lv~~L~~~g~~~V~~~D~~~~-------~~l~r~~~~~~l~~~~~~~~v~~~~~- 70 (520)
|+....++|+++|||| +|.||+++++.|.++| ++|+++|+... ....+......+...........+.+
T Consensus 2 M~~~~l~gk~~lVTGa~~s~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (315)
T 2o2s_A 2 AFPIDLRGQTAFVAGVADSHGYGWAIAKHLASAG-ARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLD 80 (315)
T ss_dssp --CCCCTTCEEEEECCSSSSSHHHHHHHHHHTTT-CEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECC
T ss_pred CCcccCCCCEEEEeCCCCCCChHHHHHHHHHHCC-CEEEEEecccccchhhhhhhhhhhhhhhhhhcccccccccccccc
Confidence 4444456789999999 8999999999999999 58998664210 00000000000000000001233333
Q ss_pred -----------cCCC--------HHHHHHHH-------cCCCEEEEcccCC---------CCCcchhhHHhhhHHHHHHH
Q 010005 71 -----------DVRD--------ISQIKKVL-------EGASTVFYVDATD---------LNTDDFYNCYMIIVQGAKNV 115 (520)
Q Consensus 71 -----------Dl~d--------~~~l~~~l-------~~~D~Vih~aa~~---------~~~~~~~~~~~~Nv~gt~~l 115 (520)
|++| .+++.+++ .++|++||+||.. ....++...+++|+.++.++
T Consensus 81 ~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l 160 (315)
T 2o2s_A 81 AAFDKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSL 160 (315)
T ss_dssp TTCSSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHH
T ss_pred ccccccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHH
Confidence 3332 33444443 3689999999852 12245677899999999999
Q ss_pred HHHHHHCC--CCEEEEeecccccccCCCCCCCCCCCccCCCCCC-ChHHHHHHHHHHHHHHhcCC----CCceEEEEecC
Q 010005 116 VTACRECK--VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQ-DLMCDLKAQAEALVLFANNI----DGLLTCALRPS 188 (520)
Q Consensus 116 l~aa~~~g--vkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~-~~Y~~sK~~~E~~~~~~~~~----~gi~~~ilRp~ 188 (520)
.+++...- -.++|++||...+.. .... ..|+.||+..+.+.+.++.+ +|+++.+++||
T Consensus 161 ~~~~~~~m~~~g~Iv~isS~~~~~~---------------~~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG 225 (315)
T 2o2s_A 161 LQHFGPIMNEGGSAVTLSYLAAERV---------------VPGYGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAG 225 (315)
T ss_dssp HHHHSTTEEEEEEEEEEEEGGGTSC---------------CTTCCTTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEC
T ss_pred HHHHHHHHhcCCEEEEEeccccccc---------------CCCccHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEecc
Confidence 99997541 158999999876521 1122 47999999999998876543 68999999999
Q ss_pred ccccCCCC--------CchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 189 NVFGPGDT--------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 189 ~vyGp~~~--------~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.+..+... .....+....... .....+...+|+|++++.++.. ......|+.+.+.++.
T Consensus 226 ~v~T~~~~~~~~~~~~~~~~~~~~~~~~~---------~p~~r~~~pedvA~~v~~L~s~---~~~~itG~~i~vdGG~ 292 (315)
T 2o2s_A 226 PLKSRAASAIGKSGEKSFIDYAIDYSYNN---------APLRRDLHSDDVGGAALFLLSP---LARAVSGVTLYVDNGL 292 (315)
T ss_dssp CCCCHHHHHTTCSSSSCHHHHHHHHHHHH---------SSSCCCCCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTG
T ss_pred cccchhhhhccccccchhHHHHHHHHhcc---------CCCCCCCCHHHHHHHHHHHhCc---hhccCcCCEEEECCCe
Confidence 98754100 0011111111100 0112356799999999987751 1245678999998864
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.9e-14 Score=149.23 Aligned_cols=196 Identities=19% Similarity=0.073 Sum_probs=139.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-----------CCCC---CCC--CCCCcEEEEe
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-----------SLLP---DSL--SSGRAEYHQV 70 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-----------~~l~---~~~--~~~~v~~~~~ 70 (520)
+++++|||||+|.||.+++++|.++|...|++. ..|+... .... +.+ ...++.++.+
T Consensus 250 ~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~-------~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~ 322 (525)
T 3qp9_A 250 ADGTVLVTGAEEPAAAEAARRLARDGAGHLLLH-------TTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTC 322 (525)
T ss_dssp TTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEE-------ECCCC---------------CHHHHHHHHHHTCEEEEEEC
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEE-------eCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEEC
Confidence 468999999999999999999999995346663 0343210 0000 001 1246788999
Q ss_pred cCCCHHHHHHHHcC------CCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHCC-----CCEEEEeec
Q 010005 71 DVRDISQIKKVLEG------ASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRECK-----VRRLVYNST 132 (520)
Q Consensus 71 Dl~d~~~l~~~l~~------~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-----vkr~V~~SS 132 (520)
|++|.+++.++++. +|+|||+||.. ....++...+++|+.|+.++.+++.... ..+||++||
T Consensus 323 Dvtd~~~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS 402 (525)
T 3qp9_A 323 DLTDAEAAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSS 402 (525)
T ss_dssp CTTSHHHHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECC
Confidence 99999999999875 59999999972 2234567789999999999999998876 789999999
Q ss_pred ccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCC-CCchHHHHHHhcCCCc
Q 010005 133 ADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGD-TQLVPLLVNLAKPGWT 211 (520)
Q Consensus 133 ~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~-~~~~~~l~~~~~~g~~ 211 (520)
.+.+. .......|+.+|...+.+...+.. .|++++++.|+.+-++.. ....... ....|
T Consensus 403 ~a~~~---------------g~~g~~~YaaaKa~l~~lA~~~~~-~gi~v~sI~pG~~~tgm~~~~~~~~~--~~~~g-- 462 (525)
T 3qp9_A 403 VAAIW---------------GGAGQGAYAAGTAFLDALAGQHRA-DGPTVTSVAWSPWEGSRVTEGATGER--LRRLG-- 462 (525)
T ss_dssp GGGTT---------------CCTTCHHHHHHHHHHHHHHTSCCS-SCCEEEEEEECCBTTSGGGSSHHHHH--HHHTT--
T ss_pred HHHcC---------------CCCCCHHHHHHHHHHHHHHHHHHh-CCCCEEEEECCccccccccchhhHHH--HHhcC--
Confidence 87652 112356899999999998776654 799999999999822211 1111110 11111
Q ss_pred eEEecCCCcccccccHHHHHHHHHHHHH
Q 010005 212 KFIIGSGENMSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 212 ~~i~g~g~~~~~~i~v~Dva~ai~~~~~ 239 (520)
...+..+++++++..++.
T Consensus 463 ----------~~~l~pee~a~~l~~~l~ 480 (525)
T 3qp9_A 463 ----------LRPLAPATALTALDTALG 480 (525)
T ss_dssp ----------BCCBCHHHHHHHHHHHHH
T ss_pred ----------CCCCCHHHHHHHHHHHHh
Confidence 134669999999999887
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-14 Score=143.36 Aligned_cols=236 Identities=10% Similarity=-0.044 Sum_probs=129.1
Q ss_pred CCCCCCCCCeEEEEcC--CChhHHHHHHHHHhcCCcEEEEecCCccc---ccCCCCCC-C-----------CCCCCCCCC
Q 010005 1 MPFDEAIPRTCVVLNG--RGFVGRSLVLRLLELGKCIVRVTDSTQSL---QLDPSESN-S-----------LLPDSLSSG 63 (520)
Q Consensus 1 m~~~~~~~~~ILVtGa--tGfIG~~lv~~L~~~g~~~V~~~D~~~~~---~l~r~~~~-~-----------~l~~~~~~~ 63 (520)
|+....+++++||||| +|.||+++++.|+++| ++|++.|+.... .-.|+..+ . ...+.+...
T Consensus 2 m~~~~l~~k~~lVTGa~~s~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (319)
T 2ptg_A 2 PLPVDLRGKTAFVAGVADSNGYGWAICKLLRAAG-ARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEK 80 (319)
T ss_dssp CCCCCCTTCEEEEECCCCTTSHHHHHHHHHHHTT-CEEEEEECHHHHHHHHC----------------------------
T ss_pred CcccccCCCEEEEeCCCCCCcHHHHHHHHHHHCC-CEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhc
Confidence 5555556789999999 8999999999999999 599987642100 00000000 0 000111110
Q ss_pred -----CcEEEEecC------------CC--------HHHHHHHH-------cCCCEEEEcccCC---------CCCcchh
Q 010005 64 -----RAEYHQVDV------------RD--------ISQIKKVL-------EGASTVFYVDATD---------LNTDDFY 102 (520)
Q Consensus 64 -----~v~~~~~Dl------------~d--------~~~l~~~l-------~~~D~Vih~aa~~---------~~~~~~~ 102 (520)
....+.+|+ +| .+++.+++ .++|++||+||.. ....+++
T Consensus 81 ~~~~~~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~ 160 (319)
T 2ptg_A 81 PVDLVFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYL 160 (319)
T ss_dssp ----CCSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHH
T ss_pred cccccccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHH
Confidence 124444442 22 22344433 3689999999852 1223567
Q ss_pred hHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCCCCCCCCCccCCCCCC-ChHHHHHHHHHHHHHHhcCC--
Q 010005 103 NCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQ-DLMCDLKAQAEALVLFANNI-- 177 (520)
Q Consensus 103 ~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~-~~Y~~sK~~~E~~~~~~~~~-- 177 (520)
..+++|+.++.++.+++... .-.++|++||...+.. .... ..|+.||+..+.+.+.++.+
T Consensus 161 ~~~~vN~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~---------------~~~~~~~Y~asKaal~~l~~~la~el~ 225 (319)
T 2ptg_A 161 AAVSSSSYSFVSLLQHFLPLMKEGGSALALSYIASEKV---------------IPGYGGGMSSAKAALESDCRTLAFEAG 225 (319)
T ss_dssp HHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEECC---------------------------------THHHHHHHHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHhcCceEEEEeccccccc---------------cCccchhhHHHHHHHHHHHHHHHHHhc
Confidence 78999999999999999765 1158999999876521 1122 47999999999988877544
Q ss_pred --CCceEEEEecCccccCCCCCchH----HHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCc
Q 010005 178 --DGLLTCALRPSNVFGPGDTQLVP----LLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGM 251 (520)
Q Consensus 178 --~gi~~~ilRp~~vyGp~~~~~~~----~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~ 251 (520)
+|+++.+++||.+..+....... .+..... ...........+...+|+|++++.++.. ......|+
T Consensus 226 ~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~-----~~~~~~~p~~r~~~peevA~~v~~L~s~---~~~~itG~ 297 (319)
T 2ptg_A 226 RARAVRVNCISAGPLKSRAASAIGKAGDKTFIDLAI-----DYSEANAPLQKELESDDVGRAALFLLSP---LARAVTGA 297 (319)
T ss_dssp HHHCCEEEEEEECCCC------------------------------------CCCHHHHHHHHHHHTSG---GGTTCCSC
T ss_pred cccCeeEEEEeeCCccChhhhhcccccchhhHHHHH-----HHHhccCCCCCCCCHHHHHHHHHHHhCc---ccCCccCC
Confidence 58999999999998764221100 0000000 0000111223456799999999988751 12457789
Q ss_pred eEEEeCCCC
Q 010005 252 AFFITNLEP 260 (520)
Q Consensus 252 ~yni~~~~~ 260 (520)
.+.+.++..
T Consensus 298 ~i~vdGG~~ 306 (319)
T 2ptg_A 298 TLYVDNGLH 306 (319)
T ss_dssp EEEESTTCT
T ss_pred EEEECCCce
Confidence 999988753
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.1e-14 Score=154.03 Aligned_cols=253 Identities=13% Similarity=0.040 Sum_probs=158.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccc-cCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQ-LDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~-l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
.+++++|||||+|.||+++++.|.++| ++|++.|+..... ..++... ....+.+...+ ....+|+.|.+++.++++
T Consensus 17 l~gk~~lVTGas~GIG~aiA~~La~~G-a~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~D~~d~~~~~~~~~ 94 (613)
T 3oml_A 17 YDGRVAVVTGAGAGLGREYALLFAERG-AKVVVNDLGGTHSGDGASQRAADIVVDEIRKAG-GEAVADYNSVIDGAKVIE 94 (613)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEC--------------CHHHHHHHHHHTT-CCEEECCCCGGGHHHHHC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcccccccCCHHHHHHHHHHHHHhC-CeEEEEeCCHHHHHHHHH
Confidence 457899999999999999999999999 6999966522100 0011110 00000011111 123589999988877775
Q ss_pred -------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCC
Q 010005 84 -------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 -------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|++||+||.. ....+++..+++|+.|+.++.+++ ++.+..|+|++||.+.+.
T Consensus 95 ~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a~~~-------- 166 (613)
T 3oml_A 95 TAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIY-------- 166 (613)
T ss_dssp ----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHHHHH--------
T ss_pred HHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcC--------
Confidence 479999999972 233467889999999999999998 556667999999987652
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
+......|+.||+..+.+.+.++.+ +|+.+.++.|+.+- +...... .....
T Consensus 167 -------~~~~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~t-~~~~~~~------------------~~~~~ 220 (613)
T 3oml_A 167 -------GNFGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAAS-RMTEGIL------------------PDILF 220 (613)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------CCCC------------------CHHHH
T ss_pred -------CCCCChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCCC-hhhhhcc------------------chhhh
Confidence 1124568999999999888776543 58999999998531 1100100 01223
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC--------------------CcCHHHHHHHHHHHcCCCCCccc
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE--------------------PIKFWDFLSIILEGLGYQRPFIK 282 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~--------------------~~t~~el~~~i~~~~g~~~~~v~ 282 (520)
..+..+|+|.+++.++.. .....|+.+++.++. ..+..++.+...+...... ..
T Consensus 221 ~~~~pedvA~~v~~L~s~----~~~~tG~~i~vdGG~~~~~~~~~~~g~~~~~~~~~~~~~e~~~~~w~~i~~~~~--~~ 294 (613)
T 3oml_A 221 NELKPKLIAPVVAYLCHE----SCEDNGSYIESAAGWATKLHMVRGKGAVLRPSLDDPVTIEYVKDVWSNVTDMSK--AK 294 (613)
T ss_dssp TTCCGGGTHHHHHHTTST----TCCCCSCEEEEETTEEEEECCCBCCCCCSSSSTTSCCCHHHHHHTHHHHTCCTT--CB
T ss_pred hcCCHHHHHHHHHHhcCC----CcCCCceEEEECCCeEEEEEEEecCCEEecCccccCCCHHHHHHHHHHhhcccc--Cc
Confidence 456789999999877651 234578888876541 2355566666666665543 34
Q ss_pred CChHHHHHHHHHHHHHHH
Q 010005 283 LPTGVVWYIILLVKWIHE 300 (520)
Q Consensus 283 ~p~~~~~~~~~~~~~~~~ 300 (520)
.|.........+.+.+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~ 312 (613)
T 3oml_A 295 HLGAIAEASGTLLEVLEK 312 (613)
T ss_dssp CCSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 444444444455554443
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.43 E-value=3.6e-13 Score=135.57 Aligned_cols=170 Identities=8% Similarity=-0.057 Sum_probs=116.9
Q ss_pred CCeEEEEcCCC--hhHHHHHHHHHhcCCcEEEEecCCccc-ccCCCCCCC-----CCCC-CCCCCCcEEEEecCCCH--H
Q 010005 8 PRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSL-QLDPSESNS-----LLPD-SLSSGRAEYHQVDVRDI--S 76 (520)
Q Consensus 8 ~~~ILVtGatG--fIG~~lv~~L~~~g~~~V~~~D~~~~~-~l~r~~~~~-----~l~~-~~~~~~v~~~~~Dl~d~--~ 76 (520)
+++++||||++ -||.+++++|.++| ++|++.++.... -+.|+..+. .... ......+..+.+|+.+. +
T Consensus 2 ~k~~lITGas~~~GIG~aiA~~la~~G-~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~ 80 (329)
T 3lt0_A 2 EDICFIAGIGDTNGYGWGIAKELSKRN-VKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN 80 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTT-CEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGG
T ss_pred CcEEEEECCCCCCchHHHHHHHHHHCC-CEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchh
Confidence 57999999875 99999999999999 588865432200 011111000 0000 01112467788888876 5
Q ss_pred ------------------HHHHHHc-------CCCEEEEcccCC---------CCCcchhhHHhhhHHHHHHHHHHHHHC
Q 010005 77 ------------------QIKKVLE-------GASTVFYVDATD---------LNTDDFYNCYMIIVQGAKNVVTACREC 122 (520)
Q Consensus 77 ------------------~l~~~l~-------~~D~Vih~aa~~---------~~~~~~~~~~~~Nv~gt~~ll~aa~~~ 122 (520)
++.++++ ++|++||+||.. ....++...+++|+.|+.++.+++...
T Consensus 81 ~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~ 160 (329)
T 3lt0_A 81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI 160 (329)
T ss_dssp GCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred hhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5555543 589999999852 233456789999999999999998765
Q ss_pred CC--CEEEEeecccccccCCCCCCCCCCCccCCCCCCC-hHHHHHHHHHHHHHHhcCC----CCceEEEEecCccccC
Q 010005 123 KV--RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQD-LMCDLKAQAEALVLFANNI----DGLLTCALRPSNVFGP 193 (520)
Q Consensus 123 gv--kr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~-~Y~~sK~~~E~~~~~~~~~----~gi~~~ilRp~~vyGp 193 (520)
=. .++|++||...+. +..... .|+.||+..+.+.+.++.+ +|+++.++.||.+-.+
T Consensus 161 m~~~g~Iv~isS~~~~~---------------~~~~~~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG~v~T~ 223 (329)
T 3lt0_A 161 MKPQSSIISLTYHASQK---------------VVPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSR 223 (329)
T ss_dssp EEEEEEEEEEECGGGTS---------------CCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCH
T ss_pred HhhCCeEEEEeCccccC---------------CCCcchHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecceeech
Confidence 21 4899999987642 112233 8999999999888776543 5899999999998754
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-10 Score=126.31 Aligned_cols=225 Identities=15% Similarity=0.100 Sum_probs=149.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEEecC-CCHHHH-HH-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDV-RDISQI-KK- 80 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~~Dl-~d~~~l-~~- 80 (520)
.+++.++||||++-||.++++.|.++| ++|++.|+.. .. ...+.+ ...++..+.+|+ .+.+++ ++
T Consensus 320 l~gkvalVTGas~GIG~a~A~~la~~G-a~Vv~~~~~~-------~~--~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~ 389 (604)
T 2et6_A 320 LKDKVVLITGAGAGLGKEYAKWFAKYG-AKVVVNDFKD-------AT--KTVDEIKAAGGEAWPDQHDVAKDSEAIIKNV 389 (604)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEECSSC-------CH--HHHHHHHHTTCEEEEECCCHHHHHHHHHHHH
T ss_pred cCCCeEEEECcchHHHHHHHHHHHHCC-CEEEEEeCcc-------HH--HHHHHHHhcCCeEEEEEcChHHHHHHHHHHH
Confidence 356889999999999999999999999 5898855421 00 000111 112355667788 554432 22
Q ss_pred --HHcCCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCCC
Q 010005 81 --VLEGASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 81 --~l~~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
.+.+.|++||.||.. ....+++..+++|+.|+.++.+++. +.+-.++|++||.+...
T Consensus 390 ~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~---------- 459 (604)
T 2et6_A 390 IDKYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIY---------- 459 (604)
T ss_dssp HHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHS----------
T ss_pred HHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcc----------
Confidence 234699999999971 2334678899999999999888874 34446999999986541
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (520)
+......|+.||+..+.+.+.++.+ +|+++.++-|+. -.+ ...... . +...+.
T Consensus 460 -----~~~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~-~T~----m~~~~~----~----------~~~~~~ 515 (604)
T 2et6_A 460 -----GNFGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA-ETA----MTLSIM----R----------EQDKNL 515 (604)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC-CCC----C-----------------------CCS
T ss_pred -----CCCCChhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC-CCc----cccccC----c----------hhhccC
Confidence 1122458999999998887766433 689999999983 211 111100 0 001234
Q ss_pred ccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC-----------------CCcCHHHHHHHHHHHcCCCC
Q 010005 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL-----------------EPIKFWDFLSIILEGLGYQR 278 (520)
Q Consensus 225 i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~-----------------~~~t~~el~~~i~~~~g~~~ 278 (520)
...+|+|.+++.++. .... ..|+.+.+.++ ..++..++.+.+.+......
T Consensus 516 ~~pe~vA~~v~~L~s---~~~~-itG~~~~vdGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 582 (604)
T 2et6_A 516 YHADQVAPLLVYLGT---DDVP-VTGETFEIGGGWIGNTRWQRAKGAVSHDEHTTVEFIKEHLNEITDFTT 582 (604)
T ss_dssp SCGGGTHHHHHHTTS---TTCC-CCSCEEEEETTEEEEEEEEECCCEECCSSSCCHHHHHHHHHHHTCCSS
T ss_pred CCHHHHHHHHHHHhC---CccC-CCCcEEEECCCeeEeeeeeccccccCCCCCCCHHHHHHHHHHHhcccc
Confidence 578999999987664 1123 77888888765 23678888888888776653
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=8e-11 Score=138.20 Aligned_cols=226 Identities=10% Similarity=-0.012 Sum_probs=146.1
Q ss_pred CCCCeEEEEcCCCh-hHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-----CCCCCCCC--CCCcEEEEecCCCHHH
Q 010005 6 AIPRTCVVLNGRGF-VGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-----SLLPDSLS--SGRAEYHQVDVRDISQ 77 (520)
Q Consensus 6 ~~~~~ILVtGatGf-IG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-----~~l~~~~~--~~~v~~~~~Dl~d~~~ 77 (520)
.+++++|||||+|. ||.++++.|+++| .+|++++. |+... ..+...+. ..++.++.+|++|.++
T Consensus 650 L~gKvaLVTGASgGgIG~aIAr~LA~~G-A~VVl~~~-------R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~es 721 (1878)
T 2uv9_A 650 FQGKHALMTGAGAGSIGAEVLQGLLSGG-AKVIVTTS-------RFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQD 721 (1878)
T ss_dssp CTTCEEEEESCCTTSHHHHHHHHHHHTT-CEEEEEES-------SCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCC-CEEEEEec-------CChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHH
Confidence 45689999999999 9999999999999 58888532 22110 00101111 2357889999999998
Q ss_pred HHHHHc-----------CCCEEEEcccCCCC----------CcchhhHHhhhHHHHHHHHHHHHHC------CCCEEEEe
Q 010005 78 IKKVLE-----------GASTVFYVDATDLN----------TDDFYNCYMIIVQGAKNVVTACREC------KVRRLVYN 130 (520)
Q Consensus 78 l~~~l~-----------~~D~Vih~aa~~~~----------~~~~~~~~~~Nv~gt~~ll~aa~~~------gvkr~V~~ 130 (520)
+.++++ ++|+|||+||.... ..++..++++|+.++.+++++++.. +-.++|++
T Consensus 722 V~alv~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnI 801 (1878)
T 2uv9_A 722 VEALVNYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPL 801 (1878)
T ss_dssp HHHHHHHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEE
T ss_pred HHHHHHHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEE
Confidence 887763 48999999997211 1345789999999999998874322 22489999
Q ss_pred ecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccc-cCCCCCchHHHHHHh
Q 010005 131 STADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVF-GPGDTQLVPLLVNLA 206 (520)
Q Consensus 131 SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vy-Gp~~~~~~~~l~~~~ 206 (520)
||...+.. ....|+.+|+..+.+...+..+ .+++++++.||.+- .+.... ........
T Consensus 802 SS~ag~~g-----------------g~~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~gT~m~~~-~~~~~~~~ 863 (1878)
T 2uv9_A 802 SPNHGTFG-----------------NDGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTRGTGLMSA-NNLVAEGV 863 (1878)
T ss_dssp CSCSSSSS-----------------CCSSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBCCTTSCSH-HHHTHHHH
T ss_pred cchhhccC-----------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEecceecCccccc-chhhHHHH
Confidence 99765310 1357999999999886643221 13999999999987 332211 11111111
Q ss_pred cCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhccc-ccCCCceEEEe--CCC--CcCHHHHHHHHH
Q 010005 207 KPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRM-VSVAGMAFFIT--NLE--PIKFWDFLSIIL 271 (520)
Q Consensus 207 ~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~-~~~~g~~yni~--~~~--~~t~~el~~~i~ 271 (520)
.. .+ . .....+|+|++++.++... . ....|+.+.+. ++. ...+.++...+.
T Consensus 864 ~~-~p---------l-r~~sPeEVA~avlfLaSd~---a~s~iTGq~I~VDVDGG~~~~~~l~el~~~lr 919 (1878)
T 2uv9_A 864 EK-LG---------V-RTFSQQEMAFNLLGLMAPA---IVNLCQSDPVFADLNGGLQFIPDLKGLMTKLR 919 (1878)
T ss_dssp HT-TT---------C-CCBCHHHHHHHHHHHHSHH---HHHHHTTSCEEEEESCSGGGCTTHHHHHHHHH
T ss_pred Hh-cC---------C-CCCCHHHHHHHHHHHhCCc---ccccccCcEEEEEcCCCccccCCHHHHHHHHH
Confidence 11 11 1 2337999999998877410 1 13457777773 442 255666655543
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.7e-11 Score=138.08 Aligned_cols=162 Identities=12% Similarity=0.069 Sum_probs=116.6
Q ss_pred CCCCeEEEEcCCCh-hHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-----CCCCCCCC--CCCcEEEEecCCCHHH
Q 010005 6 AIPRTCVVLNGRGF-VGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-----SLLPDSLS--SGRAEYHQVDVRDISQ 77 (520)
Q Consensus 6 ~~~~~ILVtGatGf-IG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-----~~l~~~~~--~~~v~~~~~Dl~d~~~ 77 (520)
.+++++|||||+|. ||.++++.|+++| .+|++++. |+... ..+..... ..++..+.+|++|.++
T Consensus 474 L~GKvALVTGASgGGIGrAIAr~LA~~G-A~VVL~~~-------R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~es 545 (1688)
T 2pff_A 474 FKDKYVLITGAGKGSIGAEVLQGLLQGG-AKVVVTTS-------RFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQD 545 (1688)
T ss_dssp CCSCCEEECSCSSSSTHHHHHHHHHHHT-CEEEEEES-------SCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTH
T ss_pred cCCCEEEEECCChHHHHHHHHHHHHHCc-CEEEEEeC-------CCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHH
Confidence 34688999999998 9999999999999 58888532 22211 01111111 2357889999999988
Q ss_pred HHHHHc-------------CCCEEEEcccCCC-C---------CcchhhHHhhhHHHHHHHHHHHHHC------CCCEEE
Q 010005 78 IKKVLE-------------GASTVFYVDATDL-N---------TDDFYNCYMIIVQGAKNVVTACREC------KVRRLV 128 (520)
Q Consensus 78 l~~~l~-------------~~D~Vih~aa~~~-~---------~~~~~~~~~~Nv~gt~~ll~aa~~~------gvkr~V 128 (520)
+.++++ ++|++||+||... . ..++...+++|+.++.++.++++.. +-.++|
T Consensus 546 VeaLVe~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIV 625 (1688)
T 2pff_A 546 VEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVIL 625 (1688)
T ss_dssp HHHHHHHHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECC
T ss_pred HHHHHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEE
Confidence 887763 4899999999721 1 2345778999999999999988432 124899
Q ss_pred EeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHH-HHHhcCCCC--ceEEEEecCcccc
Q 010005 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEAL-VLFANNIDG--LLTCALRPSNVFG 192 (520)
Q Consensus 129 ~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~-~~~~~~~~g--i~~~ilRp~~vyG 192 (520)
++||...+. + ....|+.||+..+.+ .+.++.+.+ ++++++.||.+-|
T Consensus 626 nISSiAG~~---------------G--g~saYaASKAAL~aLttrsLAeEla~~IRVNaVaPG~V~T 675 (1688)
T 2pff_A 626 PMSPNHGTF---------------G--GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRG 675 (1688)
T ss_dssp CCCSCTTTS---------------S--CBTTHHHHHHHHTHHHHHTTTSSCTTTEECCCCCCCCCCC
T ss_pred EEEChHhcc---------------C--CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEECcCcC
Confidence 999976531 1 235899999999998 444444332 8889999998885
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.6e-11 Score=127.82 Aligned_cols=237 Identities=15% Similarity=0.112 Sum_probs=148.8
Q ss_pred CCCCCCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccc-cCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHH
Q 010005 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQ-LDPSESN-SLLPDSLSSGRAEYHQVDVRDISQI 78 (520)
Q Consensus 1 m~~~~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~-l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l 78 (520)
|.....+++.++||||++-||+++++.|.++| ++|++.|+..... ..|+... ....+.+...+.+ ..+|+.|.+++
T Consensus 1 m~~~~l~gkvalVTGas~GIG~a~A~~la~~G-a~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~-~~~d~~d~~~~ 78 (604)
T 2et6_A 1 MSPVDFKDKVVIITGAGGGLGKYYSLEFAKLG-AKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGV-AVADYNNVLDG 78 (604)
T ss_dssp -CCCCCTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECC-----------CHHHHHHHHHHHTTCE-EEEECCCTTCH
T ss_pred CCCCCCCCCEEEEeCCCcHHHHHHHHHHHHcC-CEEEEEeCCccccccccchHHHHHHHHHHHhcCCe-EEEEcCCHHHH
Confidence 54444567899999999999999999999999 5999876542100 0111110 0000111111112 23577766433
Q ss_pred HHH-------HcCCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCC
Q 010005 79 KKV-------LEGASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGS 140 (520)
Q Consensus 79 ~~~-------l~~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~ 140 (520)
+++ +.+.|++||.||.. ....+++..+++|+.|+.++.+++. +.+-.|+|++||.....
T Consensus 79 ~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~~--- 155 (604)
T 2et6_A 79 DKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLY--- 155 (604)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH---
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcC---
Confidence 332 33689999999971 2334678899999999999888774 34446999999986542
Q ss_pred CCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecC
Q 010005 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGS 217 (520)
Q Consensus 141 ~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~ 217 (520)
+......|+.||+..+.+.+.++.+ +|+++.++-|+ +- .. +..... +
T Consensus 156 ------------~~~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg-~~----T~----m~~~~~---~------ 205 (604)
T 2et6_A 156 ------------GNFGQANYASAKSALLGFAETLAKEGAKYNIKANAIAPL-AR----SR----MTESIM---P------ 205 (604)
T ss_dssp ------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-CC----CH----HHHTTS---C------
T ss_pred ------------CCCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC-Cc----Cc----cccccC---C------
Confidence 1112457999999999887776533 68999999996 21 11 111100 0
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC------------------CCcCHHHHHHHHHHHcCCC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL------------------EPIKFWDFLSIILEGLGYQ 277 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~------------------~~~t~~el~~~i~~~~g~~ 277 (520)
.........+|+|.+++.++.. .....|+.+.+.++ ...+..++.+.+.+.....
T Consensus 206 -~~~~~~~~pe~vA~~v~~L~s~----~~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 278 (604)
T 2et6_A 206 -PPMLEKLGPEKVAPLVLYLSSA----ENELTGQFFEVAAGFYAQIRWERSGGVLFKPDQSFTAEVVAKRFSEILDYD 278 (604)
T ss_dssp -HHHHTTCSHHHHHHHHHHHTSS----SCCCCSCEEEEETTEEEEEEEEECCCEECCSSTTCCHHHHHHHHHHHTCCC
T ss_pred -hhhhccCCHHHHHHHHHHHhCC----cccCCCCEEEECCCeEEEEEEEeccceecCCCCCCCHHHHHHHHHHhhchh
Confidence 0112235789999999887751 13456778877654 3467788888887776443
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.2e-11 Score=131.86 Aligned_cols=162 Identities=22% Similarity=0.182 Sum_probs=123.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHH-hcCCcEEEEecCCcccccCCCCCCC-C---CCCCC--CCCCcEEEEecCCCHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLL-ELGKCIVRVTDSTQSLQLDPSESNS-L---LPDSL--SSGRAEYHQVDVRDISQIK 79 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~-~~g~~~V~~~D~~~~~~l~r~~~~~-~---l~~~~--~~~~v~~~~~Dl~d~~~l~ 79 (520)
++++++||||+|-||.++++.|. ++|..+|+++ .|+.... . +.+.+ ...++..+.+|++|.+++.
T Consensus 529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~--------~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~ 600 (795)
T 3slk_A 529 AAGTVLVTGGTGALGAEVARHLVIERGVRNLVLV--------SRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLA 600 (795)
T ss_dssp TTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEE--------ESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHH
T ss_pred cccceeeccCCCCcHHHHHHHHHHHcCCcEEEEe--------ccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHH
Confidence 46899999999999999999999 7895468884 4442110 0 00111 1345788999999999999
Q ss_pred HHHcC------CCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCC
Q 010005 80 KVLEG------ASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 80 ~~l~~------~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++++. .|.|||+|+.. ....+++..+++|+.|+.++.+++. ... +||++||.+.+.
T Consensus 601 ~~~~~~~~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~-~~l-~iV~~SS~ag~~--------- 669 (795)
T 3slk_A 601 KVLASIPDEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELID-PDV-ALVLFSSVSGVL--------- 669 (795)
T ss_dssp HHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSC-TTS-EEEEEEETHHHH---------
T ss_pred HHHHHHHHhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHh-hCC-EEEEEccHHhcC---------
Confidence 99864 59999999982 2335677899999999999999983 234 899999987652
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCC
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPG 194 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~ 194 (520)
.......|+.+|...+.+.+.+.. .|++++++-||.+-.++
T Consensus 670 ------g~~g~~~YaAaka~~~alA~~~~~-~Gi~v~sI~pG~v~t~g 710 (795)
T 3slk_A 670 ------GSGGQGNYAAANSFLDALAQQRQS-RGLPTRSLAWGPWAEHG 710 (795)
T ss_dssp ------TCSSCHHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCCSCCC
T ss_pred ------CCCCCHHHHHHHHHHHHHHHHHHH-cCCeEEEEECCeECcch
Confidence 112356899999999988887765 79999999999876543
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-10 Score=135.72 Aligned_cols=224 Identities=9% Similarity=0.034 Sum_probs=145.4
Q ss_pred CCCCeEEEEcCCCh-hHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-----CCCCCCC--CCCCcEEEEecCCCHHH
Q 010005 6 AIPRTCVVLNGRGF-VGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-----SLLPDSL--SSGRAEYHQVDVRDISQ 77 (520)
Q Consensus 6 ~~~~~ILVtGatGf-IG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-----~~l~~~~--~~~~v~~~~~Dl~d~~~ 77 (520)
.+++++|||||+|. ||.++++.|+++| ++|++.+ .|+... ..+...+ ...++.++.+|++|.++
T Consensus 673 l~gKvaLVTGASsGgIG~aIA~~La~~G-A~Vvl~~-------~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~s 744 (1887)
T 2uv8_A 673 FKDKYVLITGAGKGSIGAEVLQGLLQGG-AKVVVTT-------SRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQD 744 (1887)
T ss_dssp CTTCEEEEESCCSSSHHHHHHHHHHHTT-CEEEEEE-------SSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCC-CEEEEEe-------cCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHH
Confidence 45689999999998 9999999999999 5888853 222210 0010001 12357889999999998
Q ss_pred HHHHHc-------------CCCEEEEcccCCCC----------CcchhhHHhhhHHHHHHHHHHHHHCCC------CEEE
Q 010005 78 IKKVLE-------------GASTVFYVDATDLN----------TDDFYNCYMIIVQGAKNVVTACRECKV------RRLV 128 (520)
Q Consensus 78 l~~~l~-------------~~D~Vih~aa~~~~----------~~~~~~~~~~Nv~gt~~ll~aa~~~gv------kr~V 128 (520)
+.++++ ++|++||+||.... ..++..++++|+.++.++.++++.... .++|
T Consensus 745 V~alv~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IV 824 (1887)
T 2uv8_A 745 VEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVIL 824 (1887)
T ss_dssp HHHHHHHHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEE
T ss_pred HHHHHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEE
Confidence 887763 48999999997321 234578999999999999998854321 4899
Q ss_pred EeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHH-HHHhcCCCC--ceEEEEecCccccCCC-C--CchHHH
Q 010005 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEAL-VLFANNIDG--LLTCALRPSNVFGPGD-T--QLVPLL 202 (520)
Q Consensus 129 ~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~-~~~~~~~~g--i~~~ilRp~~vyGp~~-~--~~~~~l 202 (520)
++||...+.. ....|+.||+..+.+ .+.++.+.+ ++++++.||.+-|.+. . ......
T Consensus 825 nISS~ag~~g-----------------g~~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~tT~m~~~~~~~~~~ 887 (1887)
T 2uv8_A 825 PMSPNHGTFG-----------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSANNIIAEG 887 (1887)
T ss_dssp EECSCTTCSS-----------------CBTTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEECC-----CCTTHHH
T ss_pred EEcChHhccC-----------------CCchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEecccccccccccchhHHHH
Confidence 9999865411 235799999999998 555544332 9999999999985221 1 111111
Q ss_pred HHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEe--CCC--CcCHHHHHHHH
Q 010005 203 VNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFIT--NLE--PIKFWDFLSII 270 (520)
Q Consensus 203 ~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~--~~~--~~t~~el~~~i 270 (520)
.. ..+ . .+...+|+|++++.++.... .....|+.+.+. ++. ...+.++...+
T Consensus 888 ~~----~~p---------l-r~~sPEEVA~avlfLaSd~~--as~iTGq~I~VDVDGG~~~~~~l~el~~~l 943 (1887)
T 2uv8_A 888 IE----KMG---------V-RTFSQKEMAFNLLGLLTPEV--VELCQKSPVMADLNGGLQFVPELKEFTAKL 943 (1887)
T ss_dssp HH----TTS---------C-CCEEHHHHHHHHHGGGSHHH--HHHHHHSCEEEEESCSTTTSSSHHHHHHHH
T ss_pred HH----hcC---------C-CCCCHHHHHHHHHHHhCCCc--cccccCcEEEEECCCCeeccccHHHHHHHH
Confidence 11 010 1 23368999999987764100 012346677763 432 24555555443
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-10 Score=116.92 Aligned_cols=237 Identities=10% Similarity=-0.008 Sum_probs=144.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHh-cCCcEEEEecCCcccccCCCC-C-----CCCCCCC--CCCCCcEEEEecCCCHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLE-LGKCIVRVTDSTQSLQLDPSE-S-----NSLLPDS--LSSGRAEYHQVDVRDIS 76 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~-~g~~~V~~~D~~~~~~l~r~~-~-----~~~l~~~--~~~~~v~~~~~Dl~d~~ 76 (520)
..+|++|||||++-||.++++.|.+ .| .+|.+.|+.... ..... . ...+.+. .....+..+.+|++|.+
T Consensus 45 ~~gKvaLVTGas~GIG~AiA~~LA~g~G-A~Vv~~~~~~~~-~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~ 122 (405)
T 3zu3_A 45 NGPKRVLVIGASTGYGLAARITAAFGCG-ADTLGVFFERPG-EEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDE 122 (405)
T ss_dssp TCCSEEEEESCSSHHHHHHHHHHHHHHC-CEEEEEECCCCC-BTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHH
T ss_pred CCCCEEEEeCcchHHHHHHHHHHHHhcC-CEEEEEeCCchh-hhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHH
Confidence 3478999999999999999999999 99 588886543210 00000 0 0000000 01235678999999998
Q ss_pred HHHHHHc-------CCCEEEEcccCC-----------------------------------------CCCcchhhHHhhh
Q 010005 77 QIKKVLE-------GASTVFYVDATD-----------------------------------------LNTDDFYNCYMII 108 (520)
Q Consensus 77 ~l~~~l~-------~~D~Vih~aa~~-----------------------------------------~~~~~~~~~~~~N 108 (520)
++.++++ ++|++||.||.. ....+++.++++|
T Consensus 123 ~v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn 202 (405)
T 3zu3_A 123 IKQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVM 202 (405)
T ss_dssp HHHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhh
Confidence 8777664 479999999862 0123455677788
Q ss_pred HHHHH-HHHHHHHHCCC----CEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---C-C
Q 010005 109 VQGAK-NVVTACRECKV----RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---D-G 179 (520)
Q Consensus 109 v~gt~-~ll~aa~~~gv----kr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~-g 179 (520)
..+.. .+++++...+. .++|.+||...... .+......|+.+|...+.+.+.++.+ + |
T Consensus 203 ~~~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~-------------~p~~~~~aY~AaKaal~~ltrsLA~Ela~~~G 269 (405)
T 3zu3_A 203 GGEDWQMWIDALLDAGVLAEGAQTTAFTYLGEKIT-------------HDIYWNGSIGAAKKDLDQKVLAIRESLAAHGG 269 (405)
T ss_dssp SSHHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGG-------------TTTTTTSHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred chhHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCc-------------CCCccchHHHHHHHHHHHHHHHHHHHhCcccC
Confidence 77765 55665543221 47999999765310 01122378999999999887766543 6 9
Q ss_pred ceEEEEecCccccCCCC--CchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeC
Q 010005 180 LLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (520)
Q Consensus 180 i~~~ilRp~~vyGp~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~ 257 (520)
+++.++-|+.+-.+... +..+.-.....+ + +..+-..+|+++++..++. +...|+...+.+
T Consensus 270 IRVNaVaPG~i~T~~s~~ip~~p~y~~~l~~--~---------mkr~G~~Ed~a~~i~~L~s------d~l~~~~~~~D~ 332 (405)
T 3zu3_A 270 GDARVSVLKAVVSQASSAIPMMPLYLSLLFK--V---------MKEKGTHEGCIEQVYSLYK------DSLCGDSPHMDQ 332 (405)
T ss_dssp CEEEEEECCCCCCHHHHTSTTHHHHHHHHHH--H---------HHHHTCCCCHHHHHHHHHH------HTTSSSCCCBCT
T ss_pred eEEEEEEeCCCcCchhhcCCCCcHHHHHHHH--H---------HhcCCCcHHHHHHHHHHHh------ccccCCCCCcCC
Confidence 99999999988754221 112211111100 1 1222236889999998887 333343222333
Q ss_pred CC--CcCHHHHHHHHHHHc
Q 010005 258 LE--PIKFWDFLSIILEGL 274 (520)
Q Consensus 258 ~~--~~t~~el~~~i~~~~ 274 (520)
+. .+.-||+-+.+.+..
T Consensus 333 ~~~~r~d~~e~~~~~q~~~ 351 (405)
T 3zu3_A 333 EGRLRADYKELDPEVQNQV 351 (405)
T ss_dssp TSCEECCHHHHCHHHHHHH
T ss_pred CcCCCCchhhcCHHHHHHH
Confidence 22 256677766665543
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-10 Score=97.28 Aligned_cols=99 Identities=18% Similarity=0.185 Sum_probs=76.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
++|+|+|+|+ |++|+++++.|.+.|.++|+++|+. +.+ .. .....++..+.+|+.|.+.+.+.++++|
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~--------~~~--~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~d 71 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHD--------LAA--LA-VLNRMGVATKQVDAKDEAGLAKALGGFD 71 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESC--------HHH--HH-HHHTTTCEEEECCTTCHHHHHHHTTTCS
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCC--------HHH--HH-HHHhCCCcEEEecCCCHHHHHHHHcCCC
Confidence 4689999999 9999999999999994489996543 221 00 0113467889999999999999999999
Q ss_pred EEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeec
Q 010005 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (520)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS 132 (520)
+|||+++.. .+.+++++|.+.|++++...++
T Consensus 72 ~vi~~~~~~---------------~~~~~~~~~~~~g~~~~~~~~~ 102 (118)
T 3ic5_A 72 AVISAAPFF---------------LTPIIAKAAKAAGAHYFDLTED 102 (118)
T ss_dssp EEEECSCGG---------------GHHHHHHHHHHTTCEEECCCSC
T ss_pred EEEECCCch---------------hhHHHHHHHHHhCCCEEEecCc
Confidence 999998521 1367899999999976654443
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=99.02 E-value=3.5e-11 Score=120.82 Aligned_cols=174 Identities=11% Similarity=0.022 Sum_probs=111.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCC------cEEEEecCC----cccccCCCCCCCCCCCCCCCCCcEEEEecCCCHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGK------CIVRVTDST----QSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS 76 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~------~~V~~~D~~----~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~ 76 (520)
++|||+||||+||||++++..|+..|. .+|+++|+. ... . + .....+.+.. ... ..|+....
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~-~-~-g~~~dl~~~~--~~~---~~~i~~~~ 75 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKA-L-Q-GVMMEIDDCA--FPL---LAGMTAHA 75 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHH-H-H-HHHHHHHTTT--CTT---EEEEEEES
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCcccccc-c-h-hhHHHHhhhc--ccc---cCcEEEec
Confidence 458999999999999999999999884 279997765 110 0 0 0000011100 011 13555445
Q ss_pred HHHHHHcCCCEEEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCC-CC-EEEEeecccccccCCCCCCCCCCCccCC
Q 010005 77 QIKKVLEGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECK-VR-RLVYNSTADVVFDGSHDIHNGDETLTCC 153 (520)
Q Consensus 77 ~l~~~l~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-vk-r~V~~SS~~vyg~~~~~~~~~~E~~~~~ 153 (520)
.+.++++++|+|||+|+.. ....+.......|+.+++++++++.+++ .+ ++|++|...-.- .. -..+..+ .
T Consensus 76 ~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~-t~----~~~~~~~-~ 149 (329)
T 1b8p_A 76 DPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTN-AY----IAMKSAP-S 149 (329)
T ss_dssp SHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHH-HH----HHHHTCT-T
T ss_pred CcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHH-HH----HHHHHcC-C
Confidence 5688899999999999983 3345667889999999999999999984 55 899998643110 00 0000000 0
Q ss_pred CCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCC
Q 010005 154 WKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPG 194 (520)
Q Consensus 154 ~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~ 194 (520)
..+...|+.++....++...++++.|++...++...|+|..
T Consensus 150 ~p~~~v~g~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~H 190 (329)
T 1b8p_A 150 LPAKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNH 190 (329)
T ss_dssp SCGGGEEECCHHHHHHHHHHHHHHHTCCGGGEESCEEEBCS
T ss_pred CCHHHEEEeecHHHHHHHHHHHHHhCcCHHHceEEEEEecc
Confidence 11223466666666666666666667777777777788843
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.6e-09 Score=109.21 Aligned_cols=204 Identities=12% Similarity=0.019 Sum_probs=128.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHh-cCCcEEEEecCCcccccCCCCCCC---------CCCCCC--CCCCcEEEEecCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLE-LGKCIVRVTDSTQSLQLDPSESNS---------LLPDSL--SSGRAEYHQVDVRD 74 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~-~g~~~V~~~D~~~~~~l~r~~~~~---------~l~~~~--~~~~v~~~~~Dl~d 74 (520)
.+|++|||||++-||.++++.|.+ .| .+|.++|+... +..... .+.+.. ....+..+.+|++|
T Consensus 60 ~gKvaLVTGASsGIG~AiA~~LA~~~G-A~Vv~~~r~~~----~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd 134 (422)
T 3s8m_A 60 GPKKVLVIGASSGYGLASRITAAFGFG-ADTLGVFFEKP----GTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFS 134 (422)
T ss_dssp SCSEEEEESCSSHHHHHHHHHHHHHHC-CEEEEEECCCC----CCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTS
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhCC-CEEEEEeCCch----hhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCC
Confidence 468999999999999999999999 99 59988665321 110000 000000 12357789999999
Q ss_pred HHHHHHHHc--------CCCEEEEcccCC-----------------------------------------CCCcchhhHH
Q 010005 75 ISQIKKVLE--------GASTVFYVDATD-----------------------------------------LNTDDFYNCY 105 (520)
Q Consensus 75 ~~~l~~~l~--------~~D~Vih~aa~~-----------------------------------------~~~~~~~~~~ 105 (520)
++++.++++ ++|++||.||.. ....+++.++
T Consensus 135 ~~~v~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v 214 (422)
T 3s8m_A 135 DAARAQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTI 214 (422)
T ss_dssp HHHHHHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHH
Confidence 987766553 479999999751 0112334566
Q ss_pred hhhHHHHH-HHHHHHHHCCC----CEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---
Q 010005 106 MIIVQGAK-NVVTACRECKV----RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI--- 177 (520)
Q Consensus 106 ~~Nv~gt~-~ll~aa~~~gv----kr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~--- 177 (520)
++|..+.. .+++++...+. .++|.+||....-. . +......|+.||+..+.+.+.++.+
T Consensus 215 ~Vn~~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~-----------~--p~~~~~aY~ASKaAl~~lTrsLA~Ela~ 281 (422)
T 3s8m_A 215 TVMGGQDWELWIDALEGAGVLADGARSVAFSYIGTEIT-----------W--PIYWHGALGKAKVDLDRTAQRLNARLAK 281 (422)
T ss_dssp HHHSSHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGG-----------H--HHHTSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhchhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhcc-----------C--CCccchHHHHHHHHHHHHHHHHHHHhCc
Confidence 66666554 66666654432 47999999765310 0 1112368999999999887776533
Q ss_pred CCceEEEEecCccccCCCCC--chHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHH
Q 010005 178 DGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 178 ~gi~~~ilRp~~vyGp~~~~--~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~ 239 (520)
+|+++.++-|+.+-.+.... ..+....... ++ +...--.+|+++++..++.
T Consensus 282 ~GIRVNaVaPG~i~T~~~~~ip~~~~~~~~~~--~~---------m~r~G~pEdva~~v~~L~s 334 (422)
T 3s8m_A 282 HGGGANVAVLKSVVTQASAAIPVMPLYISMVY--KI---------MKEKGLHEGTIEQLDRLFR 334 (422)
T ss_dssp TTCEEEEEEECCCCCTTGGGSTHHHHHHHHHH--HH---------HHHTTCCCCHHHHHHHHHH
T ss_pred cCEEEEEEEcCCCcChhhhcCCCChHHHHHHH--hh---------hcCCcChHHHHHHHHHHhc
Confidence 69999999999988765321 1221111110 01 1112225889999988876
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=6.9e-09 Score=106.78 Aligned_cols=173 Identities=9% Similarity=-0.055 Sum_probs=114.2
Q ss_pred CCCCeEEEEcCCChhHHH--HHHHHHhcCCcEEEEecCCcccccCCCCC------CCCCCCC--CCCCCcEEEEecCCCH
Q 010005 6 AIPRTCVVLNGRGFVGRS--LVLRLLELGKCIVRVTDSTQSLQLDPSES------NSLLPDS--LSSGRAEYHQVDVRDI 75 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~--lv~~L~~~g~~~V~~~D~~~~~~l~r~~~------~~~l~~~--~~~~~v~~~~~Dl~d~ 75 (520)
..+|++|||||++-||.+ +++.|.++| .+|+++++..... .+... ...+.+. .....+..+.+|+.|.
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~G-a~Vi~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~ 135 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPE-AHTIGVSYETGAT-DRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSN 135 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSC-CEEEEEECCCCCC-SSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCC-CEEEEEecCcchh-hhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCH
Confidence 357899999999999999 999999999 5998866543210 00000 0000000 0124578899999999
Q ss_pred HHHHHHHc-------CCCEEEEcccCC-----------------------------------------CCCcchhhHHhh
Q 010005 76 SQIKKVLE-------GASTVFYVDATD-----------------------------------------LNTDDFYNCYMI 107 (520)
Q Consensus 76 ~~l~~~l~-------~~D~Vih~aa~~-----------------------------------------~~~~~~~~~~~~ 107 (520)
+++.++++ ++|++||.||.. ....++..++++
T Consensus 136 ~~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~v 215 (418)
T 4eue_A 136 ETKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKV 215 (418)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHH
Confidence 88777664 479999999862 011233445566
Q ss_pred hHHHHH-HHHHHHHHCCC----CEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC----C
Q 010005 108 IVQGAK-NVVTACRECKV----RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI----D 178 (520)
Q Consensus 108 Nv~gt~-~ll~aa~~~gv----kr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~----~ 178 (520)
|..+.. .+++++...+. .++|.+||..... +.|......|+.+|+..+.+.+.++.+ +
T Consensus 216 n~~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~-------------~~p~~~~~aY~ASKaAL~~ltrsLA~ELa~~~ 282 (418)
T 4eue_A 216 MGGEDWQEWCEELLYEDCFSDKATTIAYSYIGSPR-------------TYKIYREGTIGIAKKDLEDKAKLINEKLNRVI 282 (418)
T ss_dssp HSSHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGG-------------GTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcC-------------CCCccccHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 655544 55666655432 3789999875421 012222378999999999988877654 5
Q ss_pred CceEEEEecCccccC
Q 010005 179 GLLTCALRPSNVFGP 193 (520)
Q Consensus 179 gi~~~ilRp~~vyGp 193 (520)
|+++.++-|+.+-.+
T Consensus 283 GIrVN~V~PG~v~T~ 297 (418)
T 4eue_A 283 GGRAFVSVNKALVTK 297 (418)
T ss_dssp SCEEEEEECCCCCCH
T ss_pred CeEEEEEECCcCcCh
Confidence 899999999988754
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.7e-09 Score=108.18 Aligned_cols=121 Identities=14% Similarity=0.119 Sum_probs=84.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
.++|||+||||+|++|++++..|+++|. ++|+++|+... +.. ...+..... ... +.+ +.+..++.+++++
T Consensus 6 ~~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~----~~~-~~dL~~~~~--~~~-v~~-~~~t~d~~~al~g 76 (326)
T 1smk_A 6 APGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA----PGV-TADISHMDT--GAV-VRG-FLGQQQLEAALTG 76 (326)
T ss_dssp --CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH----HHH-HHHHHTSCS--SCE-EEE-EESHHHHHHHHTT
T ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc----HhH-HHHhhcccc--cce-EEE-EeCCCCHHHHcCC
Confidence 3568999999999999999999998872 27999886542 000 000111100 111 122 3345567888999
Q ss_pred CCEEEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccc
Q 010005 85 ASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135 (520)
Q Consensus 85 ~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~v 135 (520)
+|+|||+|+.. ............|+.+++++++++.+.+.+.+|+.+|.-+
T Consensus 77 aDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SNPv 128 (326)
T 1smk_A 77 MDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPV 128 (326)
T ss_dssp CSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSH
T ss_pred CCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCch
Confidence 99999999973 2334456779999999999999999998888888877543
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-08 Score=126.52 Aligned_cols=163 Identities=14% Similarity=0.056 Sum_probs=115.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC----CCCCC--CCCCcEEEEecCCCHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL----LPDSL--SSGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~----l~~~~--~~~~v~~~~~Dl~d~~~l~~ 80 (520)
.+++++||||+|-||.++++.|.++|...|++ ..|+..+.. ..+.+ ...++..+.+|++|.+++.+
T Consensus 1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl--------~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~ 1954 (2512)
T 2vz8_A 1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVL--------TSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARS 1954 (2512)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEE--------ECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEE--------EeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHH
Confidence 46889999999999999999999999534777 444432110 00001 12356788999999988877
Q ss_pred HHc------CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCCCCC
Q 010005 81 VLE------GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 81 ~l~------~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
+++ .+|+|||+||. .....++...+++|+.|+.++.++++.. ...+||++||.+...
T Consensus 1955 ~~~~~~~~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~-------- 2026 (2512)
T 2vz8_A 1955 LITEATQLGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGR-------- 2026 (2512)
T ss_dssp HHHHHHHHSCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHT--------
T ss_pred HHHHHHhcCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcC--------
Confidence 764 47999999997 2344567889999999999998888754 246999999987641
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccC
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGP 193 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp 193 (520)
.......|+.+|+..+.+.+.... .|++...+-.+.+-+.
T Consensus 2027 -------g~~g~~~Y~aaKaal~~l~~~rr~-~Gl~~~a~~~g~~~~~ 2066 (2512)
T 2vz8_A 2027 -------GNAGQANYGFANSAMERICEKRRH-DGLPGLAVQWGAIGDV 2066 (2512)
T ss_dssp -------TCTTCHHHHHHHHHHHHHHHHHHH-TTSCCCEEEECCBCTT
T ss_pred -------CCCCcHHHHHHHHHHHHHHHHHHH-CCCcEEEEEccCcCCc
Confidence 112346899999999999986554 5888888887765443
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.75 E-value=3.9e-09 Score=104.56 Aligned_cols=117 Identities=9% Similarity=0.008 Sum_probs=79.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCc-EEEEecC--CcccccCCCCCCCCCCCCC-CCCCcEEEEecCCCHHHHHHHHcC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDS--TQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~-~V~~~D~--~~~~~l~r~~~~~~l~~~~-~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
|||+||||+|++|++++..|+..|+. +++.+|+ .... +. .. ...+.+.. ...++.... | + .+++++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~-~~-~~-~~dl~~~~~~~~~~~v~~-~--~----~~a~~~ 70 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDD-TV-GQ-AADTNHGIAYDSNTRVRQ-G--G----YEDTAG 70 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHH-HH-HH-HHHHHHHHTTTCCCEEEE-C--C----GGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhh-HH-HH-HHHHHHHHhhCCCcEEEe-C--C----HHHhCC
Confidence 68999999999999999999988742 5888776 3210 00 00 00010000 011233332 2 2 345889
Q ss_pred CCEEEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccc
Q 010005 85 ASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135 (520)
Q Consensus 85 ~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~v 135 (520)
+|+|||+|+.. ............|+.+++++++++++++.+.+|+++|.-+
T Consensus 71 aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNPv 122 (303)
T 1o6z_A 71 SDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPV 122 (303)
T ss_dssp CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSH
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCChH
Confidence 99999999973 3334556789999999999999999999888888887644
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.8e-08 Score=100.30 Aligned_cols=118 Identities=10% Similarity=0.024 Sum_probs=81.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecC--CcccccCCCCC-CCCCCC--CCCCCCcEEEEecCCCHHHHHHHH
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDS--TQSLQLDPSES-NSLLPD--SLSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~--~~~~~l~r~~~-~~~l~~--~~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
|||+||||+|++|++++..|+.+|+ .+++.+|+ ... +... ...+.+ .....++.....| +++.+++
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~----~~~~~~~dl~~~~~~~~~~~~i~~~~----d~l~~al 72 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSIN----KLEGLREDIYDALAGTRSDANIYVES----DENLRII 72 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHH----HHHHHHHHHHHHHTTSCCCCEEEEEE----TTCGGGG
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchh----hhHHHHHHHHHhHHhcCCCeEEEeCC----cchHHHh
Confidence 5899999999999999999998874 35888876 321 0000 000000 0111123333322 1245568
Q ss_pred cCCCEEEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccc
Q 010005 83 EGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135 (520)
Q Consensus 83 ~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~v 135 (520)
+++|+|||+|+.. ............|+.+++++++++++++ +++|+.+|.-+
T Consensus 73 ~gaD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SNPv 125 (313)
T 1hye_A 73 DESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITNPV 125 (313)
T ss_dssp TTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSSSH
T ss_pred CCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecCcH
Confidence 8999999999973 3334567789999999999999999999 88888888655
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=3e-07 Score=79.71 Aligned_cols=104 Identities=12% Similarity=0.106 Sum_probs=73.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHH-HcCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGA 85 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~-l~~~ 85 (520)
++++|+|+|+ |.+|+.+++.|.+.| ++|+++|+.. .. . +.....+...+.+|..|.+.+.++ ++++
T Consensus 5 ~~~~v~I~G~-G~iG~~~a~~l~~~g-~~v~~~d~~~--------~~--~-~~~~~~~~~~~~~d~~~~~~l~~~~~~~~ 71 (144)
T 2hmt_A 5 KNKQFAVIGL-GRFGGSIVKELHRMG-HEVLAVDINE--------EK--V-NAYASYATHAVIANATEENELLSLGIRNF 71 (144)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTT-CCCEEEESCH--------HH--H-HTTTTTCSEEEECCTTCHHHHHTTTGGGC
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCCH--------HH--H-HHHHHhCCEEEEeCCCCHHHHHhcCCCCC
Confidence 4578999997 999999999999999 5898866532 10 0 011122456788999998877776 7789
Q ss_pred CEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccccc
Q 010005 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (520)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vy 136 (520)
|+||++++.. .+.| ..+.+.+++.+++++|..++...+
T Consensus 72 d~vi~~~~~~---------~~~~----~~~~~~~~~~~~~~ii~~~~~~~~ 109 (144)
T 2hmt_A 72 EYVIVAIGAN---------IQAS----TLTTLLLKELDIPNIWVKAQNYYH 109 (144)
T ss_dssp SEEEECCCSC---------HHHH----HHHHHHHHHTTCSEEEEECCSHHH
T ss_pred CEEEECCCCc---------hHHH----HHHHHHHHHcCCCeEEEEeCCHHH
Confidence 9999988631 1222 246778888888888776665554
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.42 E-value=2.9e-07 Score=96.12 Aligned_cols=108 Identities=15% Similarity=0.157 Sum_probs=74.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
++++|+|+| +|++|+++++.|.+.| ++|+++|+.... . ..+.+.+ .++..+.+|+.|.+++.++++++|
T Consensus 2 ~~k~VlViG-aG~iG~~ia~~L~~~G-~~V~v~~R~~~~----a---~~la~~~--~~~~~~~~Dv~d~~~l~~~l~~~D 70 (450)
T 1ff9_A 2 ATKSVLMLG-SGFVTRPTLDVLTDSG-IKVTVACRTLES----A---KKLSAGV--QHSTPISLDVNDDAALDAEVAKHD 70 (450)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHTTT-CEEEEEESSHHH----H---HHTTTTC--TTEEEEECCTTCHHHHHHHHTTSS
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCc-CEEEEEECCHHH----H---HHHHHhc--CCceEEEeecCCHHHHHHHHcCCc
Confidence 468999998 8999999999999999 589996653210 0 0111111 246788999999999999999999
Q ss_pred EEEEcccCCCCCcchhhHHh--hh-------HHHHHHHHHHHHHCCCC
Q 010005 87 TVFYVDATDLNTDDFYNCYM--II-------VQGAKNVVTACRECKVR 125 (520)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~--~N-------v~gt~~ll~aa~~~gvk 125 (520)
+|||+++......-....++ .| ...+.+++++|++.|++
T Consensus 71 vVIn~a~~~~~~~i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv~ 118 (450)
T 1ff9_A 71 LVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGIT 118 (450)
T ss_dssp EEEECCC--CHHHHHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTCE
T ss_pred EEEECCccccchHHHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCCe
Confidence 99999986321111111122 12 24678999999999983
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=9.1e-07 Score=109.63 Aligned_cols=231 Identities=13% Similarity=0.040 Sum_probs=135.6
Q ss_pred CCCCeEEEEcCCCh-hHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCC--CCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGF-VGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS--SGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGf-IG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~--~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++|++|||||++- ||.++++.|+++| .+|++.|+...... ......+.+.+. ...+..+.+|++|.+++.+++
T Consensus 2134 l~gKvaLVTGAs~GsIG~AiA~~La~~G-A~Vvi~~r~~~~~~--~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv 2210 (3089)
T 3zen_D 2134 XXDEVAVVTGASKGSIAASVVGQLLDGG-ATVIATTSRLDDDR--LAFYKQLYRDHARFDATLWVVPANMASYSDIDKLV 2210 (3089)
T ss_dssp CCCCEEEEESCCTTSHHHHHHHHHHHTT-CEEEEEESCCSHHH--HHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHHCC-CEEEEEeCChhhhh--hHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHH
Confidence 46789999999999 9999999999999 59998654321000 000000111111 234677899999998887764
Q ss_pred c-----------CCCEEEEcccC-C-----------CCCcchhh----HHhhhHHHHHHHHHHHHH----CCCC---EEE
Q 010005 83 E-----------GASTVFYVDAT-D-----------LNTDDFYN----CYMIIVQGAKNVVTACRE----CKVR---RLV 128 (520)
Q Consensus 83 ~-----------~~D~Vih~aa~-~-----------~~~~~~~~----~~~~Nv~gt~~ll~aa~~----~gvk---r~V 128 (520)
+ +.|++||.||. . ....++.. .+++|+.++..++.++.. .+.. .+|
T Consensus 2211 ~~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii 2290 (3089)
T 3zen_D 2211 EWVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVV 2290 (3089)
T ss_dssp HHHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred HHHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEE
Confidence 2 37999999986 0 11222333 388899999888877654 3321 222
Q ss_pred EeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC----CCceEEEEecCccccCCCC---CchHH
Q 010005 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI----DGLLTCALRPSNVFGPGDT---QLVPL 201 (520)
Q Consensus 129 ~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~----~gi~~~ilRp~~vyGp~~~---~~~~~ 201 (520)
..+|. ..+ .......|+.||+..+.+.+.++.+ .++.++.+-||.+-+.... .....
T Consensus 2291 ~~~ss-~~g---------------~~g~~~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v~PG~v~tT~l~~~~~~~~~ 2354 (3089)
T 3zen_D 2291 LPGSP-NRG---------------MFGGDGAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKGTGLMGQNDAIVS 2354 (3089)
T ss_dssp EEECS-STT---------------SCSSCSSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEEECCCEECSTTTTTTTTTHH
T ss_pred EECCc-ccc---------------cCCCchHHHHHHHHHHHHHHHHHhccccCCCeEEEEEeecccCCCcccccchhHHH
Confidence 22221 110 0012347999999999998887765 3588999999988754321 11111
Q ss_pred HHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEE--EeCCC---CcCHHHHHHHHH
Q 010005 202 LVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFF--ITNLE---PIKFWDFLSIIL 271 (520)
Q Consensus 202 l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yn--i~~~~---~~t~~el~~~i~ 271 (520)
.... .+ .+ ....+|+|.+++.++.-.. .....++... ++++- ..++.|+...+.
T Consensus 2355 ~~~~--~~-----------~r-~~~PeEIA~avlfLaS~~a--~~~~~~~p~~vdl~GG~~~~~~~~~~~~~~~~ 2413 (3089)
T 3zen_D 2355 AVEE--AG-----------VT-TYTTDEMAAMLLDLCTVET--KVAAAGAPVKVDLTGGLGDIKIDMAELAAKAR 2413 (3089)
T ss_dssp HHGG--GS-----------CB-CEEHHHHHHHHHHTTSHHH--HHHHHHSCEEEECSBSCSSCCCCHHHHTHHHH
T ss_pred HHHh--cC-----------CC-CCCHHHHHHHHHHHhChhh--hhHhcCCeEEEEcCCCcCcCCCCHHHHHHHHH
Confidence 1111 00 01 1168999999987653100 0111122333 33443 368888887653
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.6e-06 Score=75.24 Aligned_cols=97 Identities=20% Similarity=0.177 Sum_probs=66.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHH-HcCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGA 85 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~-l~~~ 85 (520)
++++|+|+|+ |.+|+++++.|.++| ++|+++|+... . . +.....+...+.+|.+|++.+.++ ++++
T Consensus 5 ~~~~v~I~G~-G~iG~~la~~L~~~g-~~V~~id~~~~--------~--~-~~~~~~~~~~~~gd~~~~~~l~~~~~~~~ 71 (141)
T 3llv_A 5 GRYEYIVIGS-EAAGVGLVRELTAAG-KKVLAVDKSKE--------K--I-ELLEDEGFDAVIADPTDESFYRSLDLEGV 71 (141)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTT-CCEEEEESCHH--------H--H-HHHHHTTCEEEECCTTCHHHHHHSCCTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCC-CeEEEEECCHH--------H--H-HHHHHCCCcEEECCCCCHHHHHhCCcccC
Confidence 4679999997 999999999999999 59999765431 0 0 011123578899999999888776 4679
Q ss_pred CEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEe
Q 010005 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130 (520)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~ 130 (520)
|+||.+.+. . +.| ..++..+++.+..++|-.
T Consensus 72 d~vi~~~~~------~----~~n----~~~~~~a~~~~~~~iia~ 102 (141)
T 3llv_A 72 SAVLITGSD------D----EFN----LKILKALRSVSDVYAIVR 102 (141)
T ss_dssp SEEEECCSC------H----HHH----HHHHHHHHHHCCCCEEEE
T ss_pred CEEEEecCC------H----HHH----HHHHHHHHHhCCceEEEE
Confidence 999977641 1 223 345566677675555433
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.8e-07 Score=93.57 Aligned_cols=120 Identities=13% Similarity=0.034 Sum_probs=78.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCc-E-----EEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKC-I-----VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~-~-----V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (520)
+.+||+||||+|+||++++..|...|.. + ++++|+.......+... ..+.+. ..+-.. ++.......+
T Consensus 2 ~~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a-~DL~~~-~~~~~~----~~~~~~~~~~ 75 (333)
T 5mdh_A 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVL-MELQDC-ALPLLK----DVIATDKEEI 75 (333)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHH-HHHHHT-CCTTEE----EEEEESCHHH
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhH-hhhHhh-hhcccC----CEEEcCCcHH
Confidence 3579999999999999999999987642 3 88987742100000000 001100 001111 1211223467
Q ss_pred HHcCCCEEEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCCCC--EEEEeec
Q 010005 81 VLEGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR--RLVYNST 132 (520)
Q Consensus 81 ~l~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk--r~V~~SS 132 (520)
.++++|+|||+||.. ....+....++.|+..++++++++++++.+ +++.+|.
T Consensus 76 ~~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsN 130 (333)
T 5mdh_A 76 AFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN 130 (333)
T ss_dssp HTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred HhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 789999999999872 334567788999999999999999999864 5776664
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.2e-06 Score=89.00 Aligned_cols=96 Identities=20% Similarity=0.183 Sum_probs=70.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
+.+.|||+|.|| |++|+.+++.|.+. ++|.+.|+.... +.. ....+..+..|+.|.+++.+++++
T Consensus 13 ~g~~mkilvlGa-G~vG~~~~~~L~~~--~~v~~~~~~~~~----------~~~--~~~~~~~~~~d~~d~~~l~~~~~~ 77 (365)
T 3abi_A 13 EGRHMKVLILGA-GNIGRAIAWDLKDE--FDVYIGDVNNEN----------LEK--VKEFATPLKVDASNFDKLVEVMKE 77 (365)
T ss_dssp ---CCEEEEECC-SHHHHHHHHHHTTT--SEEEEEESCHHH----------HHH--HTTTSEEEECCTTCHHHHHHHHTT
T ss_pred cCCccEEEEECC-CHHHHHHHHHHhcC--CCeEEEEcCHHH----------HHH--HhccCCcEEEecCCHHHHHHHHhC
Confidence 345689999998 99999999988654 588887664310 000 123467789999999999999999
Q ss_pred CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEee
Q 010005 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131 (520)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~S 131 (520)
+|+||+++++. + ...++++|.++|+ ++|=+|
T Consensus 78 ~DvVi~~~p~~---------~------~~~v~~~~~~~g~-~yvD~s 108 (365)
T 3abi_A 78 FELVIGALPGF---------L------GFKSIKAAIKSKV-DMVDVS 108 (365)
T ss_dssp CSEEEECCCGG---------G------HHHHHHHHHHHTC-EEEECC
T ss_pred CCEEEEecCCc---------c------cchHHHHHHhcCc-ceEeee
Confidence 99999998631 1 1368999999997 666544
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.8e-06 Score=74.33 Aligned_cols=99 Identities=14% Similarity=0.070 Sum_probs=67.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHH-HcCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGA 85 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~-l~~~ 85 (520)
++|+|+|+|+ |.+|+.+++.|.+.| ++|+++|+.. .. ........++..+.+|..+.+.+.+. ++++
T Consensus 3 ~~m~i~IiG~-G~iG~~~a~~L~~~g-~~v~~~d~~~--------~~--~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~ 70 (140)
T 1lss_A 3 HGMYIIIAGI-GRVGYTLAKSLSEKG-HDIVLIDIDK--------DI--CKKASAEIDALVINGDCTKIKTLEDAGIEDA 70 (140)
T ss_dssp --CEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCH--------HH--HHHHHHHCSSEEEESCTTSHHHHHHTTTTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCC-CeEEEEECCH--------HH--HHHHHHhcCcEEEEcCCCCHHHHHHcCcccC
Confidence 3589999986 999999999999999 5999966532 10 00000012466788999998877655 6789
Q ss_pred CEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEee
Q 010005 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131 (520)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~S 131 (520)
|+||++... . ..| ..+.+.+++.+.+++|..+
T Consensus 71 d~vi~~~~~------~----~~~----~~~~~~~~~~~~~~ii~~~ 102 (140)
T 1lss_A 71 DMYIAVTGK------E----EVN----LMSSLLAKSYGINKTIARI 102 (140)
T ss_dssp SEEEECCSC------H----HHH----HHHHHHHHHTTCCCEEEEC
T ss_pred CEEEEeeCC------c----hHH----HHHHHHHHHcCCCEEEEEe
Confidence 999999742 1 122 2466778888877777543
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=3.2e-06 Score=83.95 Aligned_cols=115 Identities=14% Similarity=0.077 Sum_probs=77.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~ 87 (520)
|||.|+||+|++|+.++..|++.|. .+|+++|+... ......+.+.....++....+ ..+++++++++|+
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~-----~~~a~dL~~~~~~~~l~~~~~----t~d~~~a~~~aDv 71 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT-----PGVAADLSHIETRATVKGYLG----PEQLPDCLKGCDV 71 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSH-----HHHHHHHTTSSSSCEEEEEES----GGGHHHHHTTCSE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCcc-----HHHHHHHhccCcCceEEEecC----CCCHHHHhCCCCE
Confidence 5899999999999999999998872 38999887531 000001111111111221111 1345778999999
Q ss_pred EEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCCC-CEEEEeec
Q 010005 88 VFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKV-RRLVYNST 132 (520)
Q Consensus 88 Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~gv-kr~V~~SS 132 (520)
||++++.. ............|+..++.+++.+.+... .++|++|-
T Consensus 72 Vvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sN 118 (314)
T 1mld_A 72 VVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN 118 (314)
T ss_dssp EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred EEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 99999873 23345567789999999999999998864 37777654
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=3.3e-05 Score=68.07 Aligned_cols=101 Identities=16% Similarity=0.117 Sum_probs=69.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCC-CCCcEEEEecCCCHHHHHHH-Hc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS-SGRAEYHQVDVRDISQIKKV-LE 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~-~~~v~~~~~Dl~d~~~l~~~-l~ 83 (520)
...++|+|+|+ |.+|+.+++.|.+.| ++|+++|+.. .+ . +.+. ..+...+.+|..+.+.+.++ ++
T Consensus 17 ~~~~~v~IiG~-G~iG~~la~~L~~~g-~~V~vid~~~--------~~--~-~~~~~~~g~~~~~~d~~~~~~l~~~~~~ 83 (155)
T 2g1u_A 17 QKSKYIVIFGC-GRLGSLIANLASSSG-HSVVVVDKNE--------YA--F-HRLNSEFSGFTVVGDAAEFETLKECGME 83 (155)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCG--------GG--G-GGSCTTCCSEEEESCTTSHHHHHTTTGG
T ss_pred cCCCcEEEECC-CHHHHHHHHHHHhCC-CeEEEEECCH--------HH--H-HHHHhcCCCcEEEecCCCHHHHHHcCcc
Confidence 45689999995 999999999999999 5999966543 21 1 1112 33567788999888777765 77
Q ss_pred CCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHH-CCCCEEEEeecc
Q 010005 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRE-CKVRRLVYNSTA 133 (520)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~-~gvkr~V~~SS~ 133 (520)
++|+||.+.+. . .. ...+.+.++. .+..++|...+.
T Consensus 84 ~ad~Vi~~~~~------~----~~----~~~~~~~~~~~~~~~~iv~~~~~ 120 (155)
T 2g1u_A 84 KADMVFAFTND------D----ST----NFFISMNARYMFNVENVIARVYD 120 (155)
T ss_dssp GCSEEEECSSC------H----HH----HHHHHHHHHHTSCCSEEEEECSS
T ss_pred cCCEEEEEeCC------c----HH----HHHHHHHHHHHCCCCeEEEEECC
Confidence 89999988752 1 11 2345667776 566666655543
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=1e-06 Score=86.34 Aligned_cols=81 Identities=22% Similarity=0.236 Sum_probs=60.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCC-CCcEEEEecCCCHHHHHHHHcC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSS-GRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~-~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
.++++++||||+|.+|++++..|.++| .+|+++|+... +.. .+.+.+.. .++..+.+|++|.+++.+++++
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G-~~V~i~~R~~~----~~~---~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 188 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEG-AEVVLCGRKLD----KAQ---AAADSVNKRFKVNVTAAETADDASRAEAVKG 188 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESSHH----HHH---HHHHHHHHHHTCCCEEEECCSHHHHHHHTTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEECCHH----HHH---HHHHHHHhcCCcEEEEecCCCHHHHHHHHHh
Confidence 356899999999999999999999999 48998554321 000 01000000 1356788999999999999999
Q ss_pred CCEEEEcccC
Q 010005 85 ASTVFYVDAT 94 (520)
Q Consensus 85 ~D~Vih~aa~ 94 (520)
+|+|||+++.
T Consensus 189 ~DvlVn~ag~ 198 (287)
T 1lu9_A 189 AHFVFTAGAI 198 (287)
T ss_dssp CSEEEECCCT
T ss_pred CCEEEECCCc
Confidence 9999999985
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.6e-06 Score=87.66 Aligned_cols=94 Identities=15% Similarity=0.237 Sum_probs=69.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCC--cEEEEecCCcccccCCCCCCC-CCCCCCC---CCCcEEEEecCCCHHHHHHH
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQSLQLDPSESNS-LLPDSLS---SGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~--~~V~~~D~~~~~~l~r~~~~~-~l~~~~~---~~~v~~~~~Dl~d~~~l~~~ 81 (520)
|++|+|+|| |++|+.+++.|.+.|. .+|++.|+.. .+. .+.+.+. ..++..+.+|+.|.+++.++
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~--------~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~ 71 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTL--------SKCQEIAQSIKAKGYGEIDITTVDADSIEELVAL 71 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCH--------HHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCH--------HHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHH
Confidence 379999998 9999999999999984 2788865532 210 0001110 13578899999999999999
Q ss_pred HcC--CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCC
Q 010005 82 LEG--ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR 125 (520)
Q Consensus 82 l~~--~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk 125 (520)
+++ +|+|||+++... ...++++|.+.|+.
T Consensus 72 l~~~~~DvVin~ag~~~---------------~~~v~~a~l~~g~~ 102 (405)
T 4ina_A 72 INEVKPQIVLNIALPYQ---------------DLTIMEACLRTGVP 102 (405)
T ss_dssp HHHHCCSEEEECSCGGG---------------HHHHHHHHHHHTCC
T ss_pred HHhhCCCEEEECCCccc---------------ChHHHHHHHHhCCC
Confidence 987 999999987310 14688999999974
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=4.2e-06 Score=81.26 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=27.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEE-EecC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVR-VTDS 41 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~-~~D~ 41 (520)
++|||.|+|++|.+|+.+++.+.+....+|+ ++|+
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~ 39 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALER 39 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECC
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence 4589999999999999999998865324665 5444
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.94 E-value=5.1e-06 Score=86.84 Aligned_cols=106 Identities=17% Similarity=0.204 Sum_probs=69.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
++++|+|+|+ |.+|+.+++.|.+.+..+|+++|+. .++. .+.+. .++..+.+|+.|.+++.++++++
T Consensus 22 ~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~--------~~ka~~la~~---~~~~~~~~D~~d~~~l~~~l~~~ 89 (467)
T 2axq_A 22 MGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRT--------LANAQALAKP---SGSKAISLDVTDDSALDKVLADN 89 (467)
T ss_dssp -CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESS--------HHHHHHHHGG---GTCEEEECCTTCHHHHHHHHHTS
T ss_pred CCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECC--------HHHHHHHHHh---cCCcEEEEecCCHHHHHHHHcCC
Confidence 4679999997 9999999999999832589995543 2210 11111 24677889999999999999999
Q ss_pred CEEEEcccCCCCCcchhh-------HHhhhH--HHHHHHHHHHHHCCC
Q 010005 86 STVFYVDATDLNTDDFYN-------CYMIIV--QGAKNVVTACRECKV 124 (520)
Q Consensus 86 D~Vih~aa~~~~~~~~~~-------~~~~Nv--~gt~~ll~aa~~~gv 124 (520)
|+|||+++......-... +++.+. ..+.+++++|++.|+
T Consensus 90 DvVIn~tp~~~~~~v~~a~l~~g~~vvd~~~~~p~~~~Ll~~Ak~aGv 137 (467)
T 2axq_A 90 DVVISLIPYTFHPNVVKSAIRTKTDVVTSSYISPALRELEPEIVKAGI 137 (467)
T ss_dssp SEEEECSCGGGHHHHHHHHHHHTCEEEECSCCCHHHHHHHHHHHHHTC
T ss_pred CEEEECCchhhhHHHHHHHHhcCCEEEEeecCCHHHHHHHHHHHHcCC
Confidence 999999875311000000 111111 235677777877776
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.92 E-value=1.4e-05 Score=70.42 Aligned_cols=77 Identities=18% Similarity=0.219 Sum_probs=56.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHH-HcC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKV-LEG 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~-l~~ 84 (520)
..++|+|+|+ |.+|+++++.|.+.| ++|+++|... +.. ..+... ...++..+.+|..|++.+.++ +++
T Consensus 2 ~~~~vlI~G~-G~vG~~la~~L~~~g-~~V~vid~~~-------~~~~~~~~~~-~~~~~~~i~gd~~~~~~l~~a~i~~ 71 (153)
T 1id1_A 2 RKDHFIVCGH-SILAINTILQLNQRG-QNVTVISNLP-------EDDIKQLEQR-LGDNADVIPGDSNDSSVLKKAGIDR 71 (153)
T ss_dssp CCSCEEEECC-SHHHHHHHHHHHHTT-CCEEEEECCC-------HHHHHHHHHH-HCTTCEEEESCTTSHHHHHHHTTTT
T ss_pred CCCcEEEECC-CHHHHHHHHHHHHCC-CCEEEEECCC-------hHHHHHHHHh-hcCCCeEEEcCCCCHHHHHHcChhh
Confidence 3478999985 999999999999999 5899965431 100 000000 123578999999999998887 889
Q ss_pred CCEEEEccc
Q 010005 85 ASTVFYVDA 93 (520)
Q Consensus 85 ~D~Vih~aa 93 (520)
+|+||-+.+
T Consensus 72 ad~vi~~~~ 80 (153)
T 1id1_A 72 CRAILALSD 80 (153)
T ss_dssp CSEEEECSS
T ss_pred CCEEEEecC
Confidence 999997764
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.87 E-value=8.9e-06 Score=81.36 Aligned_cols=122 Identities=9% Similarity=0.030 Sum_probs=78.1
Q ss_pred CCCCCCCCCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCC-CCCCCCcEEEEecCCCHHHH
Q 010005 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPD-SLSSGRAEYHQVDVRDISQI 78 (520)
Q Consensus 1 m~~~~~~~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~-~~~~~~v~~~~~Dl~d~~~l 78 (520)
|+.+=++++||.|+|++|+||+.++..|+.+|. .+|+++|+.... + +... ..+.+ .....++.. . ...
T Consensus 1 ~~~~~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k-~-~g~a-~DL~~~~~~~~~i~~-t------~d~ 70 (343)
T 3fi9_A 1 MSLSYLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVG-L-EGVA-EEIRHCGFEGLNLTF-T------SDI 70 (343)
T ss_dssp -CCCCSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHH-H-HHHH-HHHHHHCCTTCCCEE-E------SCH
T ss_pred CCccccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchh-H-HHHH-HhhhhCcCCCCceEE-c------CCH
Confidence 555556788999999999999999999999883 379998875321 0 0000 00000 011112221 1 234
Q ss_pred HHHHcCCCEEEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCCCC--EEEEeec
Q 010005 79 KKVLEGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR--RLVYNST 132 (520)
Q Consensus 79 ~~~l~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk--r~V~~SS 132 (520)
.++++++|+||.+||.. ....+.......|+...+.+.+++.+.+.+ .++.+|.
T Consensus 71 ~~al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsN 127 (343)
T 3fi9_A 71 KEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127 (343)
T ss_dssp HHHHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred HHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecC
Confidence 66789999999999872 333456778999999999999999998643 3455553
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.83 E-value=4.8e-05 Score=71.39 Aligned_cols=73 Identities=12% Similarity=0.181 Sum_probs=50.6
Q ss_pred CCCeEEEEcC----------------CChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEe
Q 010005 7 IPRTCVVLNG----------------RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV 70 (520)
Q Consensus 7 ~~~~ILVtGa----------------tGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~ 70 (520)
++|+|||||| +|.+|.+++++|.++| .+|+.+ .|.... ... ...++.. .
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~G-a~V~lv--------~~~~~~---~~~-~~~~~~~--~ 66 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAG-YEVCLI--------TTKRAL---KPE-PHPNLSI--R 66 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTT-CEEEEE--------ECTTSC---CCC-CCTTEEE--E
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCC-CEEEEE--------eCCccc---ccc-CCCCeEE--E
Confidence 4789999999 9999999999999999 599984 443321 000 0124444 4
Q ss_pred cCCCHHH----HHHHHcCCCEEEEcccC
Q 010005 71 DVRDISQ----IKKVLEGASTVFYVDAT 94 (520)
Q Consensus 71 Dl~d~~~----l~~~l~~~D~Vih~aa~ 94 (520)
|+...++ +.+.+.++|++||+||.
T Consensus 67 ~v~s~~em~~~v~~~~~~~Dili~aAAv 94 (232)
T 2gk4_A 67 EITNTKDLLIEMQERVQDYQVLIHSMAV 94 (232)
T ss_dssp ECCSHHHHHHHHHHHGGGCSEEEECSBC
T ss_pred EHhHHHHHHHHHHHhcCCCCEEEEcCcc
Confidence 5555443 34445679999999997
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00017 Score=67.38 Aligned_cols=73 Identities=16% Similarity=0.209 Sum_probs=52.6
Q ss_pred CCCCCeEEEEcC----------------CChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEE
Q 010005 5 EAIPRTCVVLNG----------------RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68 (520)
Q Consensus 5 ~~~~~~ILVtGa----------------tGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~ 68 (520)
..++++|||||| +|.+|.+++++|.++| ++|++++. ... +.. ..++ .
T Consensus 5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~G-a~V~l~~~--------~~~---l~~---~~g~--~ 67 (226)
T 1u7z_A 5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRG-ANVTLVSG--------PVS---LPT---PPFV--K 67 (226)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTT-CEEEEEEC--------SCC---CCC---CTTE--E
T ss_pred CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCC-CEEEEEEC--------Ccc---ccc---CCCC--e
Confidence 356799999999 7999999999999999 59988433 221 100 1123 3
Q ss_pred EecCCCHHHHHHH----HcCCCEEEEcccC
Q 010005 69 QVDVRDISQIKKV----LEGASTVFYVDAT 94 (520)
Q Consensus 69 ~~Dl~d~~~l~~~----l~~~D~Vih~aa~ 94 (520)
..|+.+.+++.+. +.++|++||+||.
T Consensus 68 ~~dv~~~~~~~~~v~~~~~~~Dili~~Aav 97 (226)
T 1u7z_A 68 RVDVMTALEMEAAVNASVQQQNIFIGCAAV 97 (226)
T ss_dssp EEECCSHHHHHHHHHHHGGGCSEEEECCBC
T ss_pred EEccCcHHHHHHHHHHhcCCCCEEEECCcc
Confidence 5688887655443 4569999999997
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.60 E-value=9.6e-05 Score=66.90 Aligned_cols=96 Identities=13% Similarity=0.079 Sum_probs=66.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhc-CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHH--Hc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV--LE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~-g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~--l~ 83 (520)
.+++|+|+| .|.+|+.+++.|.+. | ++|+++|++. .+ . +.+...++..+.+|..|.+.+.++ ++
T Consensus 38 ~~~~v~IiG-~G~~G~~~a~~L~~~~g-~~V~vid~~~--------~~--~-~~~~~~g~~~~~gd~~~~~~l~~~~~~~ 104 (183)
T 3c85_A 38 GHAQVLILG-MGRIGTGAYDELRARYG-KISLGIEIRE--------EA--A-QQHRSEGRNVISGDATDPDFWERILDTG 104 (183)
T ss_dssp TTCSEEEEC-CSHHHHHHHHHHHHHHC-SCEEEEESCH--------HH--H-HHHHHTTCCEEECCTTCHHHHHTBCSCC
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHhccC-CeEEEEECCH--------HH--H-HHHHHCCCCEEEcCCCCHHHHHhccCCC
Confidence 357899998 699999999999999 9 5899966543 21 0 011123567889999998888776 78
Q ss_pred CCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCC-CCEEEE
Q 010005 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVY 129 (520)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-vkr~V~ 129 (520)
++|+||.+.+. . .....+++.+++.+ ..++|.
T Consensus 105 ~ad~vi~~~~~------~--------~~~~~~~~~~~~~~~~~~ii~ 137 (183)
T 3c85_A 105 HVKLVLLAMPH------H--------QGNQTALEQLQRRNYKGQIAA 137 (183)
T ss_dssp CCCEEEECCSS------H--------HHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCEEEEeCCC------h--------HHHHHHHHHHHHHCCCCEEEE
Confidence 89999987641 1 12234566777777 445543
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.56 E-value=9.7e-05 Score=68.97 Aligned_cols=95 Identities=11% Similarity=0.060 Sum_probs=66.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHH-HcCCCE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAST 87 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~-l~~~D~ 87 (520)
|+|+|+|+ |.+|+++++.|.++|+ +|+++|.+. .. ........+...+.+|..|.+.+.++ ++++|+
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~-~v~vid~~~--------~~--~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~ 68 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKY-GVVIINKDR--------EL--CEEFAKKLKATIIHGDGSHKEILRDAEVSKNDV 68 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTC-CEEEEESCH--------HH--HHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-eEEEEECCH--------HH--HHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCE
Confidence 68999995 9999999999999994 899966543 11 00000112578999999999988887 788999
Q ss_pred EEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHH-CCCCEEEE
Q 010005 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRE-CKVRRLVY 129 (520)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~-~gvkr~V~ 129 (520)
||-+.+. . ..| ..+...+++ .+..++|-
T Consensus 69 vi~~~~~------d----~~n----~~~~~~a~~~~~~~~iia 97 (218)
T 3l4b_C 69 VVILTPR------D----EVN----LFIAQLVMKDFGVKRVVS 97 (218)
T ss_dssp EEECCSC------H----HHH----HHHHHHHHHTSCCCEEEE
T ss_pred EEEecCC------c----HHH----HHHHHHHHHHcCCCeEEE
Confidence 9965531 1 122 235556665 57777664
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00024 Score=71.28 Aligned_cols=97 Identities=13% Similarity=0.159 Sum_probs=60.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcC-----CcEEEEecCCcccccCCCCCCCCCCCC---CCC-CCcEEEEecCCCHHHH
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELG-----KCIVRVTDSTQSLQLDPSESNSLLPDS---LSS-GRAEYHQVDVRDISQI 78 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g-----~~~V~~~D~~~~~~l~r~~~~~~l~~~---~~~-~~v~~~~~Dl~d~~~l 78 (520)
||||.|.||||++|+.+++.|.+++ +.+|+.+... |+..+ .+... +.. ..+.. .|+ |.+
T Consensus 9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~------~~agk-~~~~~~~~l~~~~~~~~--~~~-~~~-- 76 (352)
T 2nqt_A 9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAA------TSAGS-TLGEHHPHLTPLAHRVV--EPT-EAA-- 76 (352)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEES------SCTTS-BGGGTCTTCGGGTTCBC--EEC-CHH--
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECC------CcCCC-chhhhcccccccceeee--ccC-CHH--
Confidence 5799999999999999999999887 5577774221 11111 11111 100 12222 233 332
Q ss_pred HHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccc
Q 010005 79 KKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135 (520)
Q Consensus 79 ~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~v 135 (520)
.+.++|+||.+.+... +..+++++ +.|+ ++|-+|+..-
T Consensus 77 --~~~~~DvVf~alg~~~---------------s~~~~~~~-~~G~-~vIDlSa~~R 114 (352)
T 2nqt_A 77 --VLGGHDAVFLALPHGH---------------SAVLAQQL-SPET-LIIDCGADFR 114 (352)
T ss_dssp --HHTTCSEEEECCTTSC---------------CHHHHHHS-CTTS-EEEECSSTTT
T ss_pred --HhcCCCEEEECCCCcc---------------hHHHHHHH-hCCC-EEEEECCCcc
Confidence 3568999998887532 24567777 7786 7898888754
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0011 Score=66.62 Aligned_cols=81 Identities=14% Similarity=0.047 Sum_probs=56.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHH-hcCCcEEEEecCCcccccCCCCCCCCCC-----------CC--CCCCCcEEEEecC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLL-ELGKCIVRVTDSTQSLQLDPSESNSLLP-----------DS--LSSGRAEYHQVDV 72 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~-~~g~~~V~~~D~~~~~~l~r~~~~~~l~-----------~~--~~~~~v~~~~~Dl 72 (520)
.+|++|||||+.-+|.+.+..|. +.| ..|.++... +.+...... +. -.......+.+|+
T Consensus 49 ~pK~vLVtGaSsGiGlA~AialAf~~G-A~vi~v~~~------~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv 121 (401)
T 4ggo_A 49 APKNVLVLGCSNGYGLASRITAAFGYG-AATIGVSFE------KAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDA 121 (401)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHHHC-CEEEEEECC------CCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCT
T ss_pred CCCEEEEECCCCcHHHHHHHHHHhhCC-CCEEEEecC------CcccccccccccchhHHHHHHHHHHcCCCceeEeCCC
Confidence 36899999999999999999988 567 477764322 111110000 00 0124567899999
Q ss_pred CCHHHHHHHHc-------CCCEEEEcccC
Q 010005 73 RDISQIKKVLE-------GASTVFYVDAT 94 (520)
Q Consensus 73 ~d~~~l~~~l~-------~~D~Vih~aa~ 94 (520)
.|.++++++++ ++|++||.+|.
T Consensus 122 ~d~e~i~~vi~~i~~~~G~IDiLVhS~A~ 150 (401)
T 4ggo_A 122 FSDEIKAQVIEEAKKKGIKFDLIVYSLAS 150 (401)
T ss_dssp TSHHHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 99988887775 47999999997
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00033 Score=67.64 Aligned_cols=96 Identities=21% Similarity=0.159 Sum_probs=55.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEE-ecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRV-TDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~-~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
|+|+||.|+|++|.+|+.+++.+.+....++++ +|+..+....+ ...+.. +... ++.-.+++.+++++
T Consensus 5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~-----d~gel~---g~~~---gv~v~~dl~~ll~~ 73 (272)
T 4f3y_A 5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQ-----DAGAFL---GKQT---GVALTDDIERVCAE 73 (272)
T ss_dssp -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTS-----BTTTTT---TCCC---SCBCBCCHHHHHHH
T ss_pred ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccc-----cHHHHh---CCCC---CceecCCHHHHhcC
Confidence 456899999999999999999999875456665 44432100000 011111 0000 11112234556668
Q ss_pred CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEE
Q 010005 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (520)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V 128 (520)
+|+||++.. ...+...++.|.++|+ ++|
T Consensus 74 ~DVVIDfT~---------------p~a~~~~~~~al~~G~-~vV 101 (272)
T 4f3y_A 74 ADYLIDFTL---------------PEGTLVHLDAALRHDV-KLV 101 (272)
T ss_dssp CSEEEECSC---------------HHHHHHHHHHHHHHTC-EEE
T ss_pred CCEEEEcCC---------------HHHHHHHHHHHHHcCC-CEE
Confidence 999999863 2234456777777886 444
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00014 Score=62.82 Aligned_cols=74 Identities=18% Similarity=0.166 Sum_probs=55.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHH-HcCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGA 85 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~-l~~~ 85 (520)
..++|+|.| .|.+|+.+++.|.+.| ++|+++|.+. .. . +.+...++..+.+|..|++.+.++ ++++
T Consensus 6 ~~~~viIiG-~G~~G~~la~~L~~~g-~~v~vid~~~--------~~--~-~~~~~~g~~~i~gd~~~~~~l~~a~i~~a 72 (140)
T 3fwz_A 6 ICNHALLVG-YGRVGSLLGEKLLASD-IPLVVIETSR--------TR--V-DELRERGVRAVLGNAANEEIMQLAHLECA 72 (140)
T ss_dssp CCSCEEEEC-CSHHHHHHHHHHHHTT-CCEEEEESCH--------HH--H-HHHHHTTCEEEESCTTSHHHHHHTTGGGC
T ss_pred CCCCEEEEC-cCHHHHHHHHHHHHCC-CCEEEEECCH--------HH--H-HHHHHcCCCEEECCCCCHHHHHhcCcccC
Confidence 457899999 4999999999999999 5999966543 21 0 111124678999999999887765 5789
Q ss_pred CEEEEccc
Q 010005 86 STVFYVDA 93 (520)
Q Consensus 86 D~Vih~aa 93 (520)
|+||-+.+
T Consensus 73 d~vi~~~~ 80 (140)
T 3fwz_A 73 KWLILTIP 80 (140)
T ss_dssp SEEEECCS
T ss_pred CEEEEECC
Confidence 99986654
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00015 Score=71.67 Aligned_cols=115 Identities=6% Similarity=0.017 Sum_probs=70.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEE-ecCCCHHHHHHHHcC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQ-VDVRDISQIKKVLEG 84 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~-~Dl~d~~~l~~~l~~ 84 (520)
+|||.|+|| |.+|+.++..|...|+.+|+++|+.... +. ... ..+.+.. .....+... .|+ +.+++
T Consensus 2 ~~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~-~~-g~~-~dl~~~~~~~~~~~~i~~t~d~-------~a~~~ 70 (309)
T 1ur5_A 2 RKKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGV-PQ-GKA-LDLYEASPIEGFDVRVTGTNNY-------ADTAN 70 (309)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSH-HH-HHH-HHHHTTHHHHTCCCCEEEESCG-------GGGTT
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccH-HH-HHH-HhHHHhHhhcCCCeEEEECCCH-------HHHCC
Confidence 479999998 9999999999999996469998875421 00 000 0011100 001122222 232 34789
Q ss_pred CCEEEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecc
Q 010005 85 ASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (520)
Q Consensus 85 ~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~ 133 (520)
+|+||.+++.+ ............|+...+.+.+.+.+.+.+.+|...|.
T Consensus 71 aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN 120 (309)
T 1ur5_A 71 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN 120 (309)
T ss_dssp CSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCS
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCC
Confidence 99999999872 22223345678888999999999998875555544443
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00059 Score=67.71 Aligned_cols=114 Identities=12% Similarity=0.097 Sum_probs=75.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCC--CCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~--~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
+.|||.|+|+ |.+|+.++..|...|. .+|+++|+.... .+... ..+.+ .....++.....|. +.++
T Consensus 4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k--~~g~a-~DL~~~~~~~~~~v~i~~~~~-------~a~~ 72 (326)
T 3pqe_A 4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEK--AMGDV-MDLNHGKAFAPQPVKTSYGTY-------EDCK 72 (326)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHH--HHHHH-HHHHHTGGGSSSCCEEEEECG-------GGGT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHH--HHHHH-HHHHhccccccCCeEEEeCcH-------HHhC
Confidence 4689999995 9999999999999884 389998875321 00000 00100 01112344443332 3578
Q ss_pred CCCEEEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEee
Q 010005 84 GASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (520)
Q Consensus 84 ~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~S 131 (520)
++|+||.+||.+ ....+.......|+...+.+++++.+...+ .++.+|
T Consensus 73 ~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvt 122 (326)
T 3pqe_A 73 DADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVAT 122 (326)
T ss_dssp TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred CCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcC
Confidence 999999999873 333456778899999999999999998643 455544
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00099 Score=66.59 Aligned_cols=95 Identities=18% Similarity=0.184 Sum_probs=57.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCC--cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~--~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
+|||+|.||+|++|+.+++.|.+++| .+++.+. .|+.....+. +. +.+....|+ |++ .++++
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~-------s~~~~g~~~~--~~--g~~i~~~~~-~~~----~~~~~ 69 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLA-------SAESAGQRMG--FA--ESSLRVGDV-DSF----DFSSV 69 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEE-------CTTTTTCEEE--ET--TEEEECEEG-GGC----CGGGC
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEe-------cCCCCCCccc--cC--CcceEEecC-CHH----HhcCC
Confidence 47999999999999999999997764 2355432 2211100000 11 112211222 222 25689
Q ss_pred CEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccc
Q 010005 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (520)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~ 134 (520)
|+||-+.+. ..+...++++.+.|+ ++|-+|+..
T Consensus 70 DvV~~a~g~---------------~~s~~~a~~~~~aG~-kvId~Sa~~ 102 (340)
T 2hjs_A 70 GLAFFAAAA---------------EVSRAHAERARAAGC-SVIDLSGAL 102 (340)
T ss_dssp SEEEECSCH---------------HHHHHHHHHHHHTTC-EEEETTCTT
T ss_pred CEEEEcCCc---------------HHHHHHHHHHHHCCC-EEEEeCCCC
Confidence 999988752 234567888888998 477777664
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00041 Score=65.39 Aligned_cols=93 Identities=14% Similarity=0.108 Sum_probs=65.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHH-HcCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGA 85 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~-l~~~ 85 (520)
..++|+|.|+ |.+|+.+++.|.+.| + |+++|. ++.. ... .. .++..+.+|.+|++.+.++ ++++
T Consensus 8 ~~~~viI~G~-G~~G~~la~~L~~~g-~-v~vid~--------~~~~--~~~-~~-~~~~~i~gd~~~~~~l~~a~i~~a 72 (234)
T 2aef_A 8 KSRHVVICGW-SESTLECLRELRGSE-V-FVLAED--------ENVR--KKV-LR-SGANFVHGDPTRVSDLEKANVRGA 72 (234)
T ss_dssp --CEEEEESC-CHHHHHHHHHSTTSE-E-EEEESC--------GGGH--HHH-HH-TTCEEEESCTTCHHHHHHTTCTTC
T ss_pred CCCEEEEECC-ChHHHHHHHHHHhCC-e-EEEEEC--------CHHH--HHH-Hh-cCCeEEEcCCCCHHHHHhcCcchh
Confidence 3578999996 999999999999999 5 888544 3321 111 11 4688999999999988877 8899
Q ss_pred CEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEE
Q 010005 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLV 128 (520)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V 128 (520)
|+||-+.+. . +.| ..+...+++.+.+ ++|
T Consensus 73 d~vi~~~~~------d----~~n----~~~~~~a~~~~~~~~ii 102 (234)
T 2aef_A 73 RAVIVDLES------D----SET----IHCILGIRKIDESVRII 102 (234)
T ss_dssp SEEEECCSC------H----HHH----HHHHHHHHHHCSSSEEE
T ss_pred cEEEEcCCC------c----HHH----HHHHHHHHHHCCCCeEE
Confidence 999976531 1 223 3456667777764 544
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00076 Score=67.86 Aligned_cols=39 Identities=23% Similarity=0.201 Sum_probs=28.2
Q ss_pred CCCCCCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEe
Q 010005 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (520)
Q Consensus 1 m~~~~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~ 39 (520)
|...++|++||.|.||+|++|+.+++.|.+.+..+|+++
T Consensus 1 m~~~~~M~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i 39 (354)
T 1ys4_A 1 MSKGEKMKIKVGVLGATGSVGQRFVQLLADHPMFELTAL 39 (354)
T ss_dssp ------CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEE
T ss_pred CCCcccccceEEEECcCCHHHHHHHHHHhcCCCCEEEEE
Confidence 544444457999999999999999999988765577764
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00057 Score=68.47 Aligned_cols=98 Identities=13% Similarity=0.017 Sum_probs=59.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCC-CCcEEEEecCCCHHHHHHHHcCCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSS-GRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~-~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
++||.|.||+|++|+.+++.|.++++.+++.+... +.....+...... .+.. ...+.+.+ + +.++|
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~-------~~~g~~~~~~~~~~~g~~--~~~~~~~~---~-~~~vD 70 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSR-------RFAGEPVHFVHPNLRGRT--NLKFVPPE---K-LEPAD 70 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCS-------TTTTSBGGGTCGGGTTTC--CCBCBCGG---G-CCCCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECc-------hhhCchhHHhCchhcCcc--cccccchh---H-hcCCC
Confidence 57999999999999999999998875577764221 1111111110000 0100 01122222 2 47899
Q ss_pred EEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccc
Q 010005 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (520)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~ 134 (520)
+||.+.+.. .+..+++.+.+.|+ ++|-+|+..
T Consensus 71 vV~~a~g~~---------------~s~~~a~~~~~aG~-~VId~Sa~~ 102 (345)
T 2ozp_A 71 ILVLALPHG---------------VFAREFDRYSALAP-VLVDLSADF 102 (345)
T ss_dssp EEEECCCTT---------------HHHHTHHHHHTTCS-EEEECSSTT
T ss_pred EEEEcCCcH---------------HHHHHHHHHHHCCC-EEEEcCccc
Confidence 999887632 13456777778887 688888754
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00025 Score=71.45 Aligned_cols=100 Identities=10% Similarity=0.125 Sum_probs=58.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCC-CCcEEEEecCCCHHHHHHHHcCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSS-GRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~-~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
+++||.|.||+|++|+.+++.|.+++..+++.+.. +......+...... .+.. ..|+.-.+ .+.++++
T Consensus 15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~-------~~~~g~~~~~~~~~~~~~v--~~dl~~~~--~~~~~~v 83 (359)
T 1xyg_A 15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTA-------DRKAGQSMESVFPHLRAQK--LPTLVSVK--DADFSTV 83 (359)
T ss_dssp CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBC-------STTTTSCHHHHCGGGTTSC--CCCCBCGG--GCCGGGC
T ss_pred cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeC-------chhcCCCHHHhCchhcCcc--cccceecc--hhHhcCC
Confidence 34699999999999999999999987557776432 11110011100000 0100 12332222 3345689
Q ss_pred CEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccc
Q 010005 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (520)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~ 134 (520)
|+||.+.+... +...+..+ +.|+ ++|-.|+..
T Consensus 84 DvVf~atp~~~---------------s~~~a~~~-~aG~-~VId~sa~~ 115 (359)
T 1xyg_A 84 DAVFCCLPHGT---------------TQEIIKEL-PTAL-KIVDLSADF 115 (359)
T ss_dssp SEEEECCCTTT---------------HHHHHHTS-CTTC-EEEECSSTT
T ss_pred CEEEEcCCchh---------------HHHHHHHH-hCCC-EEEECCccc
Confidence 99998886422 24456666 7787 688888754
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0021 Score=63.64 Aligned_cols=114 Identities=11% Similarity=0.076 Sum_probs=69.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCC-CCCCCCCC-CCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSES-NSLLPDSL-SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~-~~~l~~~~-~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
++|||.|+|+ |++|..++..|...|+ .+|+++|+... +... ...+.+.. ...++.... .+ .+.++
T Consensus 6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~----~~~g~~~dl~~~~~~~~~~~i~~---~~----~~a~~ 73 (318)
T 1y6j_A 6 SRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKE----KAIGEAMDINHGLPFMGQMSLYA---GD----YSDVK 73 (318)
T ss_dssp -CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC-------CCHHHHHHTTSCCCTTCEEEC-----C----GGGGT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChH----HHHHHHHHHHHhHHhcCCeEEEE---CC----HHHhC
Confidence 4589999997 9999999999999873 27999988642 1110 00111110 001232222 22 33588
Q ss_pred CCCEEEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeec
Q 010005 84 GASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (520)
Q Consensus 84 ~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS 132 (520)
++|+||.+++.+ ............|+...+.+++.+.+.+..-+|...|
T Consensus 74 ~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (318)
T 1y6j_A 74 DCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 123 (318)
T ss_dssp TCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred CCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Confidence 999999999873 2233455678999999999999999875333333333
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0013 Score=65.19 Aligned_cols=114 Identities=12% Similarity=0.075 Sum_probs=73.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCC--CCCCCCcEEEEecCCCHHHHHHH
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~--~~~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
++++|||.|+|| |.+|..++..|...|. .+|.++|+.... +. ... ..+.+ ......+.... | + .++
T Consensus 3 ~m~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~-~~-g~~-~dl~~~~~~~~~~~~v~~-~--~----~~a 71 (317)
T 3d0o_A 3 KFKGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEK-VR-GDV-MDLKHATPYSPTTVRVKA-G--E----YSD 71 (317)
T ss_dssp -CCCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHH-HH-HHH-HHHHHHGGGSSSCCEEEE-C--C----GGG
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhH-hh-hhh-hhHHhhhhhcCCCeEEEe-C--C----HHH
Confidence 345689999998 9999999999998873 379998875421 00 000 00000 01112333332 2 2 345
Q ss_pred HcCCCEEEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEE
Q 010005 82 LEGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVY 129 (520)
Q Consensus 82 l~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~ 129 (520)
++++|+||-.++.+ ............|+.-.+.+.+.+.+.+.. .++.
T Consensus 72 ~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv 121 (317)
T 3d0o_A 72 CHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLV 121 (317)
T ss_dssp GTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred hCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 78999999999873 223455667899999999999999988643 3444
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00077 Score=66.80 Aligned_cols=114 Identities=11% Similarity=0.093 Sum_probs=64.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCC--CCCCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~--~~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
..++||.|+|+ |.+|+.++..|...|. .+|+++|+.... ..... ..+.+ .+. .++.....| .+.+
T Consensus 7 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k--~~g~a-~DL~~~~~~~-~~~~i~~~~-------~~a~ 74 (326)
T 3vku_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDK--TKGDA-IDLEDALPFT-SPKKIYSAE-------YSDA 74 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHH--HHHHH-HHHHTTGGGS-CCCEEEECC-------GGGG
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHH--HHHHH-hhHhhhhhhc-CCcEEEECc-------HHHh
Confidence 45689999995 9999999999999885 379998874310 00000 00000 001 234444333 2357
Q ss_pred cCCCEEEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEee
Q 010005 83 EGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (520)
Q Consensus 83 ~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~S 131 (520)
+++|+||.+||.. ....+....++.|+.-.+.+.+++.++..+ .++.+|
T Consensus 75 ~~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvt 125 (326)
T 3vku_A 75 KDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA 125 (326)
T ss_dssp TTCSEEEECCCCC----------------CHHHHHHHHHTTTCCSEEEECS
T ss_pred cCCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 8999999999972 223456677899999999999999988633 444444
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0016 Score=64.86 Aligned_cols=120 Identities=14% Similarity=0.052 Sum_probs=76.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCC------cEEEEecCCcccccCCCCC-CCCCCCCCCCCCcEEEEecCCCHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGK------CIVRVTDSTQSLQLDPSES-NSLLPDSLSSGRAEYHQVDVRDISQIK 79 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~------~~V~~~D~~~~~~l~r~~~-~~~l~~~~~~~~v~~~~~Dl~d~~~l~ 79 (520)
+..||.|+||+|.||++|+..|..... .++..+|+.... ..-+. .-.+...........+.++ | ..
T Consensus 23 ~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~--~~~~Gva~DL~~~~~~~~~~~~~~~--~---~~ 95 (345)
T 4h7p_A 23 SAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPAL--KALAGVEAELEDCAFPLLDKVVVTA--D---PR 95 (345)
T ss_dssp CCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGH--HHHHHHHHHHHHTTCTTEEEEEEES--C---HH
T ss_pred CCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCcc--ccchhhhhhhhhcCccCCCcEEEcC--C---hH
Confidence 345999999999999999998877542 268888875320 00000 0001110000111222221 2 35
Q ss_pred HHHcCCCEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCC--CCEEEEeecc
Q 010005 80 KVLEGASTVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTA 133 (520)
Q Consensus 80 ~~l~~~D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g--vkr~V~~SS~ 133 (520)
+.++++|+||-.||. ..........++.|..-.+.+.+++.+.. -.+++.+|..
T Consensus 96 ~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNP 152 (345)
T 4h7p_A 96 VAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNP 152 (345)
T ss_dssp HHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred HHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCC
Confidence 679999999999997 44456788899999999999999998753 2256666643
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0049 Score=60.66 Aligned_cols=114 Identities=16% Similarity=0.108 Sum_probs=74.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhc-CC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLEL-GK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~-g~-~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
|||.|+||+|.||+.++..|..+ +. .+++++|+... .. ...-.+.+. ......... ..+ ...+.++++|
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~--~~--G~a~Dl~~~--~~~~~v~~~-~~~--~~~~~~~~aD 71 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV--TP--GVAVDLSHI--PTAVKIKGF-SGE--DATPALEGAD 71 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTT--HH--HHHHHHHTS--CSSEEEEEE-CSS--CCHHHHTTCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCC--ch--hHHHHhhCC--CCCceEEEe-cCC--CcHHHhCCCC
Confidence 68999999999999999999875 42 47999887530 00 000011111 011222111 011 1256788999
Q ss_pred EEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEee
Q 010005 87 TVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (520)
Q Consensus 87 ~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~S 131 (520)
+||-.||. .....+....++.|+.-.+.+.+++.++..+ .++.+|
T Consensus 72 ivii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt 118 (312)
T 3hhp_A 72 VVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT 118 (312)
T ss_dssp EEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec
Confidence 99999987 3344567889999999999999999888633 455444
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0018 Score=65.04 Aligned_cols=99 Identities=13% Similarity=0.076 Sum_probs=58.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEec-CCcccccCCCCCCCCCCCCCCC--------CCcEEEEecCCCHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD-STQSLQLDPSESNSLLPDSLSS--------GRAEYHQVDVRDISQ 77 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D-~~~~~~l~r~~~~~~l~~~~~~--------~~v~~~~~Dl~d~~~ 77 (520)
+++||.|.||+|++|+.+++.|.+....+|+.+. ... +.. ..+...... .+......|+ |.+.
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~------~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~ 74 (350)
T 2ep5_A 3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPS------KIG-KKYKDAVKWIEQGDIPEEVQDLPIVST-NYED 74 (350)
T ss_dssp CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGG------GTT-SBHHHHCCCCSSSSCCHHHHTCBEECS-SGGG
T ss_pred CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChh------hcC-CCHHHhcCcccccccccCCceeEEeeC-CHHH
Confidence 3579999999999999999999887655777642 211 110 011000000 0011111333 3332
Q ss_pred HHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecc
Q 010005 78 IKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (520)
Q Consensus 78 l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~ 133 (520)
++++|+||-+.+. ..+..++..+.+.|+ ++|-.|+.
T Consensus 75 ----~~~vDvVf~atp~---------------~~s~~~a~~~~~aG~-~VId~s~~ 110 (350)
T 2ep5_A 75 ----HKDVDVVLSALPN---------------ELAESIELELVKNGK-IVVSNASP 110 (350)
T ss_dssp ----GTTCSEEEECCCH---------------HHHHHHHHHHHHTTC-EEEECSST
T ss_pred ----hcCCCEEEECCCh---------------HHHHHHHHHHHHCCC-EEEECCcc
Confidence 3689999976641 234567888888997 57766665
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.004 Score=61.88 Aligned_cols=102 Identities=17% Similarity=0.198 Sum_probs=59.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC---CCC-CCcEEEEecCCCHHHHHHHHc
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS---LSS-GRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~---~~~-~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
|+||.|.||||++|+.+++.|.+....++..+....+ .|+..+ .+.+. +.. ....+... .|.+ ++.+
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~---~~saGk-~~~~~~p~~~~~~~~~v~~~--~~~~---~~~~ 74 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQ---SNDAGK-LISDLHPQLKGIVELPLQPM--SDIS---EFSP 74 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETT---CTTTTS-BHHHHCGGGTTTCCCBEEEE--SSGG---GTCT
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCc---hhhcCC-chHHhCccccCccceeEecc--CCHH---HHhc
Confidence 5799999999999999999999876567777432210 001110 11100 111 12233222 0222 2226
Q ss_pred CCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccc
Q 010005 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (520)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~ 134 (520)
++|+||-+.+. ..+...+..+.+.|+ ++|=.|+..
T Consensus 75 ~~Dvvf~a~p~---------------~~s~~~~~~~~~~g~-~vIDlSa~f 109 (337)
T 3dr3_A 75 GVDVVFLATAH---------------EVSHDLAPQFLEAGC-VVFDLSGAF 109 (337)
T ss_dssp TCSEEEECSCH---------------HHHHHHHHHHHHTTC-EEEECSSTT
T ss_pred CCCEEEECCCh---------------HHHHHHHHHHHHCCC-EEEEcCCcc
Confidence 89999977652 223556677778887 688888764
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0057 Score=60.89 Aligned_cols=96 Identities=13% Similarity=0.094 Sum_probs=59.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcC--CcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELG--KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g--~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
+++||.|.||+|++|+.+++.|.+++ ..+++.+.. .|+..+ .+. +....+.+ .|+ |++ .+++
T Consensus 2 ~~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s------~~~~G~-~~~--~~~~~i~~--~~~-~~~----~~~~ 65 (336)
T 2r00_A 2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLAS------ERSEGK-TYR--FNGKTVRV--QNV-EEF----DWSQ 65 (336)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEEC------TTTTTC-EEE--ETTEEEEE--EEG-GGC----CGGG
T ss_pred CccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEEC------CCCCCC-cee--ecCceeEE--ecC-ChH----HhcC
Confidence 46899999999999999999999883 345666321 111111 010 11112222 232 222 2468
Q ss_pred CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccc
Q 010005 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (520)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~ 134 (520)
+|+||-+.+. ..+...+..+.+.|+ ++|-.|+..
T Consensus 66 vDvVf~a~g~---------------~~s~~~a~~~~~~G~-~vId~s~~~ 99 (336)
T 2r00_A 66 VHIALFSAGG---------------ELSAKWAPIAAEAGV-VVIDNTSHF 99 (336)
T ss_dssp CSEEEECSCH---------------HHHHHHHHHHHHTTC-EEEECSSTT
T ss_pred CCEEEECCCc---------------hHHHHHHHHHHHcCC-EEEEcCCcc
Confidence 9999987752 124567777888897 688888764
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0019 Score=66.31 Aligned_cols=95 Identities=13% Similarity=0.094 Sum_probs=67.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHH-HcCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGA 85 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~-l~~~ 85 (520)
..++|+|.| .|.+|+.+++.|.+.| ..|+++|.+... . +.+...++..+.||.++++.+.++ ++++
T Consensus 3 ~~~~viIiG-~Gr~G~~va~~L~~~g-~~vvvId~d~~~----------v-~~~~~~g~~vi~GDat~~~~L~~agi~~A 69 (413)
T 3l9w_A 3 HGMRVIIAG-FGRFGQITGRLLLSSG-VKMVVLDHDPDH----------I-ETLRKFGMKVFYGDATRMDLLESAGAAKA 69 (413)
T ss_dssp -CCSEEEEC-CSHHHHHHHHHHHHTT-CCEEEEECCHHH----------H-HHHHHTTCCCEESCTTCHHHHHHTTTTTC
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCC-CCEEEEECCHHH----------H-HHHHhCCCeEEEcCCCCHHHHHhcCCCcc
Confidence 357899999 5999999999999999 599997765421 0 111123678899999999988887 7889
Q ss_pred CEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEE
Q 010005 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLV 128 (520)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V 128 (520)
|+||-+... -.....++..+++.+.+ ++|
T Consensus 70 ~~viv~~~~--------------~~~n~~i~~~ar~~~p~~~Ii 99 (413)
T 3l9w_A 70 EVLINAIDD--------------PQTNLQLTEMVKEHFPHLQII 99 (413)
T ss_dssp SEEEECCSS--------------HHHHHHHHHHHHHHCTTCEEE
T ss_pred CEEEECCCC--------------hHHHHHHHHHHHHhCCCCeEE
Confidence 999866531 12234567777777643 444
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0048 Score=61.99 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=57.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCC--cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~--~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
++||.|.||||++|+.|++.|.++++ .+++.+.. .|+..+ .+. +. +.+...-++. .+ .++++
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as------~~saG~-~~~--~~--~~~~~~~~~~-~~----~~~~~ 65 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLAS------ARSAGK-SLK--FK--DQDITIEETT-ET----AFEGV 65 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEEC------TTTTTC-EEE--ET--TEEEEEEECC-TT----TTTTC
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEc------cccCCC-cce--ec--CCCceEeeCC-HH----HhcCC
Confidence 57999999999999999999998753 23444321 122211 111 11 1222222332 12 24789
Q ss_pred CEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccc
Q 010005 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (520)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~ 134 (520)
|+||-+.+. ..+...+..+.+.|+ ++|=.|+..
T Consensus 66 Dvvf~a~~~---------------~~s~~~a~~~~~~G~-~vIDlSa~~ 98 (366)
T 3pwk_A 66 DIALFSAGS---------------STSAKYAPYAVKAGV-VVVDNTSYF 98 (366)
T ss_dssp SEEEECSCH---------------HHHHHHHHHHHHTTC-EEEECSSTT
T ss_pred CEEEECCCh---------------HhHHHHHHHHHHCCC-EEEEcCCcc
Confidence 999988752 224556777778887 677777764
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00084 Score=61.32 Aligned_cols=98 Identities=17% Similarity=0.149 Sum_probs=60.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHH---HHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ---IKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~---l~~~l~ 83 (520)
++++|+||||+|-||..+++.+...| .+|++.|+.. .+...... .+... ..|..+.+. +.+...
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~~--------~~~~~~~~---~g~~~-~~d~~~~~~~~~~~~~~~ 104 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGSD--------AKREMLSR---LGVEY-VGDSRSVDFADEILELTD 104 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESSH--------HHHHHHHT---TCCSE-EEETTCSTHHHHHHHHTT
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcC-CEEEEEeCCH--------HHHHHHHH---cCCCE-EeeCCcHHHHHHHHHHhC
Confidence 46899999999999999999999999 5899865432 11000000 12222 247666543 333332
Q ss_pred --CCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccc
Q 010005 84 --GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (520)
Q Consensus 84 --~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~ 134 (520)
++|+||++++. . .....++.++..| |+|.+++..
T Consensus 105 ~~~~D~vi~~~g~-------~--------~~~~~~~~l~~~G--~~v~~g~~~ 140 (198)
T 1pqw_A 105 GYGVDVVLNSLAG-------E--------AIQRGVQILAPGG--RFIELGKKD 140 (198)
T ss_dssp TCCEEEEEECCCT-------H--------HHHHHHHTEEEEE--EEEECSCGG
T ss_pred CCCCeEEEECCch-------H--------HHHHHHHHhccCC--EEEEEcCCC
Confidence 58999999862 0 1233444444444 888887754
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0051 Score=59.56 Aligned_cols=92 Identities=9% Similarity=0.012 Sum_probs=54.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC---CCCCCCC--CCCCcEEEEecCCCHHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN---SLLPDSL--SSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~---~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
+++||.|.|++|-+|+.+++.+.+....+++++ ++|++.. ....+.. ...++.. .+++.++
T Consensus 20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~-------vd~~~~~~~G~d~gel~G~~~~gv~v-------~~dl~~l 85 (288)
T 3ijp_A 20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAV-------LVRKGSSFVDKDASILIGSDFLGVRI-------TDDPESA 85 (288)
T ss_dssp -CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEE-------BCCTTCTTTTSBGGGGTTCSCCSCBC-------BSCHHHH
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEE-------EecCCccccccchHHhhccCcCCcee-------eCCHHHH
Confidence 357999999999999999999988754565543 3333210 0000100 0112211 1245667
Q ss_pred HcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEE
Q 010005 82 LEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (520)
Q Consensus 82 l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V 128 (520)
++++|+||.+.. ...+...++.|.++|+ .+|
T Consensus 86 l~~aDVvIDFT~---------------p~a~~~~~~~~l~~Gv-~vV 116 (288)
T 3ijp_A 86 FSNTEGILDFSQ---------------PQASVLYANYAAQKSL-IHI 116 (288)
T ss_dssp TTSCSEEEECSC---------------HHHHHHHHHHHHHHTC-EEE
T ss_pred hcCCCEEEEcCC---------------HHHHHHHHHHHHHcCC-CEE
Confidence 778999998863 1233456677777776 444
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0032 Score=62.64 Aligned_cols=108 Identities=7% Similarity=0.037 Sum_probs=67.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCC-CC-CCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPS-ES-NSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~-~~-~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
.|||.|+|| |.+|+.++..|...|+.+|+++|+.... +... .. ...........++.. .. | +.+.++++
T Consensus 9 ~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~-~~~~~~~l~~~~~~~~~~~~i~~-t~---d---~~ea~~~a 79 (331)
T 1pzg_A 9 RKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGM-PEGKALDLSHVTSVVDTNVSVRA-EY---S---YEAALTGA 79 (331)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSH-HHHHHHHHHHHHHHTTCCCCEEE-EC---S---HHHHHTTC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhH-HHHHHHHHHhhhhccCCCCEEEE-eC---C---HHHHhCCC
Confidence 479999997 9999999999999995379998775421 0000 00 000000001112211 12 2 34578999
Q ss_pred CEEEEcccCC-CCCc-----chhhHHhhhHHHHHHHHHHHHHCCC
Q 010005 86 STVFYVDATD-LNTD-----DFYNCYMIIVQGAKNVVTACRECKV 124 (520)
Q Consensus 86 D~Vih~aa~~-~~~~-----~~~~~~~~Nv~gt~~ll~aa~~~gv 124 (520)
|+||-.++.. .... ........|+.-.+.+++.+.+...
T Consensus 80 DiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p 124 (331)
T 1pzg_A 80 DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCP 124 (331)
T ss_dssp SEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred CEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999762 1112 3456677888889999999888753
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0034 Score=61.13 Aligned_cols=113 Identities=12% Similarity=0.021 Sum_probs=74.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCC--CCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~--~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
|||.|+|+ |.||+.++..|+.++. .++..+|+.... .+... -.+.+. ...........+ |. +.++++
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~--~~G~a-~DL~h~~~~~~~~~~i~~~~--d~----~~~~~a 70 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDL--AVGEA-MDLAHAAAGIDKYPKIVGGA--DY----SLLKGS 70 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHH--HHHHH-HHHHHHHGGGTCCCEEEEES--CG----GGGTTC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCc--chhhh-hhhhcccccCCCCCeEecCC--CH----HHhCCC
Confidence 68999994 9999999999988764 479998875420 00000 001000 000112222221 22 247799
Q ss_pred CEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEee
Q 010005 86 STVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (520)
Q Consensus 86 D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~S 131 (520)
|+||-.||. .....+....++.|..-.+.+.+++.+++.+ .++.+|
T Consensus 71 DvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvs 118 (294)
T 2x0j_A 71 EIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT 118 (294)
T ss_dssp SEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred CEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEec
Confidence 999999997 4445678889999999999999999998744 344444
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0039 Score=61.67 Aligned_cols=116 Identities=13% Similarity=0.029 Sum_probs=74.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
|++|||.|+| +|.+|+.++..|...|..+|+++|+..... ... ...+.+.. ..........+ | .+.++
T Consensus 3 m~~~kI~iiG-aG~vG~~~a~~l~~~~~~~v~l~Di~~~~~--~g~-a~dL~~~~~~~~~~~~v~~t~--d----~~a~~ 72 (321)
T 3p7m_A 3 MARKKITLVG-AGNIGGTLAHLALIKQLGDVVLFDIAQGMP--NGK-ALDLLQTCPIEGVDFKVRGTN--D----YKDLE 72 (321)
T ss_dssp CCCCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECSSSSHH--HHH-HHHHHTTHHHHTCCCCEEEES--C----GGGGT
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhCCCceEEEEeCChHHH--HHH-HHHHHhhhhhcCCCcEEEEcC--C----HHHHC
Confidence 3468999999 599999999999998833899988754210 000 00111100 00122222111 2 24678
Q ss_pred CCCEEEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEee
Q 010005 84 GASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (520)
Q Consensus 84 ~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~S 131 (520)
++|+||.+++.+ .........+..|+...+.+++.+.+.... .++.+|
T Consensus 73 ~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt 122 (321)
T 3p7m_A 73 NSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT 122 (321)
T ss_dssp TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec
Confidence 999999999872 333456677889999999999999988633 555554
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0025 Score=62.85 Aligned_cols=117 Identities=11% Similarity=0.020 Sum_probs=73.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC--CCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~--~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
+.+||.|+|+ |.+|+.++..|...|+.+|+++|+.......+... ..+.+. ...........+ | .+.+++
T Consensus 7 ~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a-~dl~~~~~~~~~~~~i~~t~--d----~~a~~~ 78 (315)
T 3tl2_A 7 KRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKA-LDMLEASPVQGFDANIIGTS--D----YADTAD 78 (315)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHH-HHHHHHHHHHTCCCCEEEES--C----GGGGTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhh-hhHHHhhhhccCCCEEEEcC--C----HHHhCC
Confidence 4579999996 99999999999999843899987752000000000 000000 000111222111 2 235789
Q ss_pred CCEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEee
Q 010005 85 ASTVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (520)
Q Consensus 85 ~D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~S 131 (520)
+|+||-+++. .....+....++.|+...+.+.+++.+.+.+ .++.+|
T Consensus 79 aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvs 127 (315)
T 3tl2_A 79 SDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLT 127 (315)
T ss_dssp CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECC
Confidence 9999999987 2334566788999999999999999987633 555555
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0016 Score=64.46 Aligned_cols=108 Identities=15% Similarity=0.148 Sum_probs=68.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCC--CCCCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~--~~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
++++||.|+|+ |.+|+.++..|...|. .+|+++|+.... .+... ..+.+ ........... | + .+.+
T Consensus 4 ~~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~--~~~~~-~dl~~~~~~~~~~~~i~~-~--~----~~al 72 (316)
T 1ldn_A 4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESK--AIGDA-MDFNHGKVFAPKPVDIWH-G--D----YDDC 72 (316)
T ss_dssp TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHH--HHHHH-HHHHHHTTSSSSCCEEEE-C--C----GGGT
T ss_pred CCCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcch--HHHHH-hhHHHHhhhcCCCeEEEc-C--c----HHHh
Confidence 45689999998 9999999999988763 379998876421 00000 00100 01111334332 2 2 2357
Q ss_pred cCCCEEEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCCC
Q 010005 83 EGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKV 124 (520)
Q Consensus 83 ~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~gv 124 (520)
+++|+||-+++.. ............|..-.+.+++.+.+...
T Consensus 73 ~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p 115 (316)
T 1ldn_A 73 RDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGF 115 (316)
T ss_dssp TTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCC
Confidence 8999999999872 22233455678888888999999888753
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0014 Score=66.29 Aligned_cols=75 Identities=23% Similarity=0.264 Sum_probs=54.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
.+++|+|+|+ |-+|..+++.|...|. +|+++|+.... .. ...+.. +.. +.+|..+.+++.+.++++|
T Consensus 165 ~~~~V~ViGa-G~iG~~~a~~l~~~Ga-~V~~~d~~~~~----~~---~~~~~~---g~~-~~~~~~~~~~l~~~~~~~D 231 (369)
T 2eez_A 165 APASVVILGG-GTVGTNAAKIALGMGA-QVTILDVNHKR----LQ---YLDDVF---GGR-VITLTATEANIKKSVQHAD 231 (369)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCHHH----HH---HHHHHT---TTS-EEEEECCHHHHHHHHHHCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEECCHHH----HH---HHHHhc---Cce-EEEecCCHHHHHHHHhCCC
Confidence 4689999998 9999999999999995 99997654310 00 000101 111 5677888888999999999
Q ss_pred EEEEcccC
Q 010005 87 TVFYVDAT 94 (520)
Q Consensus 87 ~Vih~aa~ 94 (520)
+||++++.
T Consensus 232 vVi~~~g~ 239 (369)
T 2eez_A 232 LLIGAVLV 239 (369)
T ss_dssp EEEECCC-
T ss_pred EEEECCCC
Confidence 99999875
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0034 Score=62.09 Aligned_cols=116 Identities=12% Similarity=0.068 Sum_probs=71.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC--CCCCCcEEE-EecCCCHHHHHHH
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYH-QVDVRDISQIKKV 81 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~--~~~~~v~~~-~~Dl~d~~~l~~~ 81 (520)
.|++|||.|+|+ |.+|..++..|...|+.+|+++|+.... + .... ..+.+. ......... ..| . ++
T Consensus 4 ~m~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~-~-~g~~-~dl~~~~~~~~~~~~v~~t~d---~----~a 72 (324)
T 3gvi_A 4 SMARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGT-P-QGKG-LDIAESSPVDGFDAKFTGAND---Y----AA 72 (324)
T ss_dssp --CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSH-H-HHHH-HHHHHHHHHHTCCCCEEEESS---G----GG
T ss_pred CCcCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchh-H-HHHH-HHHhchhhhcCCCCEEEEeCC---H----HH
Confidence 355789999997 9999999999999984389998875421 0 0000 001000 000122222 122 1 46
Q ss_pred HcCCCEEEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEee
Q 010005 82 LEGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (520)
Q Consensus 82 l~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~S 131 (520)
++++|+||.+++.. ....+....+..|+.-.+.+++.+.+.+.. .++.+|
T Consensus 73 ~~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvt 124 (324)
T 3gvi_A 73 IEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICIT 124 (324)
T ss_dssp GTTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred HCCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecC
Confidence 78999999999872 222345567888999999999999888632 555555
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.006 Score=58.04 Aligned_cols=112 Identities=13% Similarity=0.126 Sum_probs=69.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--CCCCC--------CCCC--CCC--cEEEEec
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--NSLLP--------DSLS--SGR--AEYHQVD 71 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~--~~~l~--------~~~~--~~~--v~~~~~D 71 (520)
.++|+|.| .|-+|+++++.|...|..+++++|.+. ..++.|..- ..... +.+. .+. ++.+..+
T Consensus 31 ~~~VlVvG-~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~ 109 (249)
T 1jw9_B 31 DSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL 109 (249)
T ss_dssp HCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred CCeEEEEe-eCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEecc
Confidence 47899998 688999999999999966899988764 112333210 00000 0000 122 3445555
Q ss_pred CCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccccc
Q 010005 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (520)
Q Consensus 72 l~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vy 136 (520)
+. .+.+.+.++++|+||.+.. +++ .-..+.++|++.++ .+|+.+....+
T Consensus 110 ~~-~~~~~~~~~~~DvVi~~~d------~~~--------~~~~l~~~~~~~~~-p~i~~~~~g~~ 158 (249)
T 1jw9_B 110 LD-DAELAALIAEHDLVLDCTD------NVA--------VRNQLNAGCFAAKV-PLVSGAAIRME 158 (249)
T ss_dssp CC-HHHHHHHHHTSSEEEECCS------SHH--------HHHHHHHHHHHHTC-CEEEEEEEBTE
T ss_pred CC-HhHHHHHHhCCCEEEEeCC------CHH--------HHHHHHHHHHHcCC-CEEEeeeccce
Confidence 64 4567788899999998753 121 22456778888886 57776655443
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.02 Score=54.43 Aligned_cols=113 Identities=14% Similarity=0.127 Sum_probs=69.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--CCCCCCC--------C--CCCCc--EEEEec
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--NSLLPDS--------L--SSGRA--EYHQVD 71 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~--~~~l~~~--------~--~~~~v--~~~~~D 71 (520)
..+|+|.|+ |-+|+++++.|...|..+++++|.+. ..++.|+.- ....... + ..+.+ +.+..+
T Consensus 28 ~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~ 106 (251)
T 1zud_1 28 DSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQR 106 (251)
T ss_dssp TCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred cCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 579999996 55999999999999977899988764 112333310 0000000 0 01233 334444
Q ss_pred CCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccc
Q 010005 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (520)
Q Consensus 72 l~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg 137 (520)
+ +.+.+.+.++++|+||.+.. +. ..-..+-++|++.++ .+|+.+....+|
T Consensus 107 ~-~~~~~~~~~~~~DvVi~~~d------~~--------~~r~~l~~~~~~~~~-p~i~~~~~g~~G 156 (251)
T 1zud_1 107 L-TGEALKDAVARADVVLDCTD------NM--------ATRQEINAACVALNT-PLITASAVGFGG 156 (251)
T ss_dssp C-CHHHHHHHHHHCSEEEECCS------SH--------HHHHHHHHHHHHTTC-CEEEEEEEBTEE
T ss_pred C-CHHHHHHHHhcCCEEEECCC------CH--------HHHHHHHHHHHHhCC-CEEEEeccccce
Confidence 4 44567788889999998752 12 122456778888886 588877655443
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0049 Score=63.63 Aligned_cols=97 Identities=15% Similarity=0.210 Sum_probs=63.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCc---EEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCC--CHHH-HHHH
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKC---IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVR--DISQ-IKKV 81 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~---~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~--d~~~-l~~~ 81 (520)
.+||+|.| .|-||+.+++.|.+++.. .|+++|.... .+ .+.+ ..++++...++. |.++ +.++
T Consensus 13 ~~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~---~~-----~~~~---~~g~~~~~~~Vdadnv~~~l~aL 80 (480)
T 2ph5_A 13 KNRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGT---KV-----DVAQ---QYGVSFKLQQITPQNYLEVIGST 80 (480)
T ss_dssp CSCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCC---SC-----CHHH---HHTCEEEECCCCTTTHHHHTGGG
T ss_pred CCCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchh---hh-----hHHh---hcCCceeEEeccchhHHHHHHHH
Confidence 47899999 999999999999997533 5787664321 11 1111 113466666664 4433 5567
Q ss_pred HcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccc
Q 010005 82 LEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (520)
Q Consensus 82 l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~ 134 (520)
+++.|+|||++-.. ....++++|.++|+ -|++++.
T Consensus 81 l~~~DvVIN~s~~~---------------~~l~Im~acleaGv---~YlDTa~ 115 (480)
T 2ph5_A 81 LEENDFLIDVSIGI---------------SSLALIILCNQKGA---LYINAAT 115 (480)
T ss_dssp CCTTCEEEECCSSS---------------CHHHHHHHHHHHTC---EEEESSC
T ss_pred hcCCCEEEECCccc---------------cCHHHHHHHHHcCC---CEEECCC
Confidence 77779999966321 12468999999998 4666654
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0029 Score=61.71 Aligned_cols=113 Identities=12% Similarity=0.031 Sum_probs=73.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCc-EEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~-~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
|||.|+|+ |.+|+.++..|...|+. +|+++|+.... + .... ..+.+.. .......... .| .++++++
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~-~-~g~~-~dl~~~~~~~~~~~~i~~t--~d----~~a~~~a 70 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDL-A-VGEA-MDLAHAAAGIDKYPKIVGG--AD----YSLLKGS 70 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHH-H-HHHH-HHHHHHHHTTTCCCEEEEE--SC----GGGGTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHH-H-HHHH-HHHHhhhhhcCCCCEEEEe--CC----HHHhCCC
Confidence 68999998 99999999999998843 79998775421 0 0000 0000000 0112233222 12 3467899
Q ss_pred CEEEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCCC-CEEEEee
Q 010005 86 STVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKV-RRLVYNS 131 (520)
Q Consensus 86 D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~gv-kr~V~~S 131 (520)
|+||.+++.. ....+.......|+.-.+.+.+.+.+.+. ..++.+|
T Consensus 71 DiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs 118 (294)
T 1oju_A 71 EIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT 118 (294)
T ss_dssp SEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred CEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 9999999873 33345677889999999999999999863 3555555
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0028 Score=62.90 Aligned_cols=115 Identities=15% Similarity=0.078 Sum_probs=75.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCC--CCCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~--~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
...+||.|+|+ |.+|+.++..|+.+|. .+|+++|+.... .+... ..+.+. .. .....+..+ |.+ .+
T Consensus 17 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~--~~g~a-~DL~~~~~~~-~~~~i~~~~--d~~----~~ 85 (331)
T 4aj2_A 17 VPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDK--LKGEM-MDLQHGSLFL-KTPKIVSSK--DYS----VT 85 (331)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHH--HHHHH-HHHHHTGGGC-SCCEEEECS--SGG----GG
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHH--HHHHH-Hhhhhhhhcc-CCCeEEEcC--CHH----Hh
Confidence 45689999997 9999999999999884 379998875310 00000 001000 00 111222221 322 47
Q ss_pred cCCCEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEee
Q 010005 83 EGASTVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (520)
Q Consensus 83 ~~~D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~S 131 (520)
+++|+||.+||. .....+....++.|+.-.+.+.+++.++... .++.+|
T Consensus 86 ~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvt 136 (331)
T 4aj2_A 86 ANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVS 136 (331)
T ss_dssp TTEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 899999999987 3344567789999999999999999988632 555555
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.011 Score=59.63 Aligned_cols=102 Identities=15% Similarity=0.098 Sum_probs=58.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCC---CCCC-------CCcEEEEecCCC
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD---SLSS-------GRAEYHQVDVRD 74 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~---~~~~-------~~v~~~~~Dl~d 74 (520)
.|+++||.|.||||++|..+++.|.+....++..+.- -.|+..+ .+.+ .+.. ....+...|-
T Consensus 16 ~M~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~a-----S~~saGk-~~~~~~~~~~~~~~p~~~~~~~v~~~~~-- 87 (381)
T 3hsk_A 16 HMSVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGA-----SSRSAGK-KYKDAASWKQTETLPETEQDIVVQECKP-- 87 (381)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEE-----CTTTTTS-BHHHHCCCCCSSCCCHHHHTCBCEESSS--
T ss_pred cCCccEEEEECCCChHHHHHHHHHHcCCCceEEEeec-----cccccCC-CHHHhcccccccccccccccceEEeCch--
Confidence 3456799999999999999999888876556654210 0122111 1110 0000 1122222221
Q ss_pred HHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccc
Q 010005 75 ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (520)
Q Consensus 75 ~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~ 134 (520)
.+ .++++|+||-+.+. ..+..+...+.+.|+ ++|=.|+..
T Consensus 88 ~~----~~~~~Dvvf~alp~---------------~~s~~~~~~~~~~G~-~VIDlSa~f 127 (381)
T 3hsk_A 88 EG----NFLECDVVFSGLDA---------------DVAGDIEKSFVEAGL-AVVSNAKNY 127 (381)
T ss_dssp CT----TGGGCSEEEECCCH---------------HHHHHHHHHHHHTTC-EEEECCSTT
T ss_pred hh----hcccCCEEEECCCh---------------hHHHHHHHHHHhCCC-EEEEcCCcc
Confidence 10 24689999988652 223456677778887 677777764
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0048 Score=61.40 Aligned_cols=92 Identities=13% Similarity=0.113 Sum_probs=65.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHH-HcCCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAS 86 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~-l~~~D 86 (520)
.++|+|.|+ |.+|+.+++.|.++| + |+++|.++ +. . + +...++..+.+|..|++.+.++ ++++|
T Consensus 115 ~~~viI~G~-G~~g~~l~~~L~~~g-~-v~vid~~~--------~~--~-~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~ 179 (336)
T 1lnq_A 115 SRHVVICGW-SESTLECLRELRGSE-V-FVLAEDEN--------VR--K-K-VLRSGANFVHGDPTRVSDLEKANVRGAR 179 (336)
T ss_dssp -CEEEEESC-CHHHHHHHTTGGGSC-E-EEEESCGG--------GH--H-H-HHHTTCEEEESCTTSHHHHHHTCSTTEE
T ss_pred cCCEEEECC-cHHHHHHHHHHHhCC-c-EEEEeCCh--------hh--h-h-HHhCCcEEEEeCCCCHHHHHhcChhhcc
Confidence 358999995 999999999999999 5 88855433 21 1 1 2235789999999999999887 78899
Q ss_pred EEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEE
Q 010005 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLV 128 (520)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V 128 (520)
+|+-+.+. . +.| ..++..+++.+.+ +++
T Consensus 180 ~vi~~~~~------d----~~n----~~~~~~ar~~~~~~~ii 208 (336)
T 1lnq_A 180 AVIVDLES------D----SET----IHCILGIRKIDESVRII 208 (336)
T ss_dssp EEEECCSS------H----HHH----HHHHHHHHTTCTTSEEE
T ss_pred EEEEcCCc------c----HHH----HHHHHHHHHHCCCCeEE
Confidence 99866531 1 223 3456677777764 444
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.003 Score=62.62 Aligned_cols=114 Identities=10% Similarity=0.083 Sum_probs=72.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCC--CCCCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~--~~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
++.|||.|+|| |.+|+.++..|+..+. .+|+++|+.... +. ... ..+.+ ... .++.... | + .+++
T Consensus 7 ~~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~-~~-g~~-~dl~~~~~~~-~~~~i~~-~--~----~~a~ 74 (326)
T 2zqz_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDK-TK-GDA-IDLSNALPFT-SPKKIYS-A--E----YSDA 74 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHH-HH-HHH-HHHHTTGGGS-CCCEEEE-C--C----GGGG
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchH-hH-HHH-HHHHHHHHhc-CCeEEEE-C--C----HHHh
Confidence 45689999998 9999999999988773 379998875321 00 000 00000 011 2333332 2 2 3347
Q ss_pred cCCCEEEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCCC-CEEEEee
Q 010005 83 EGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKV-RRLVYNS 131 (520)
Q Consensus 83 ~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~gv-kr~V~~S 131 (520)
+++|+||..++.. ............|+...+.+.+.+.++.. ..++.+|
T Consensus 75 ~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 125 (326)
T 2zqz_A 75 KDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA 125 (326)
T ss_dssp GGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 8999999999872 22344567788999999999999988863 2455444
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0055 Score=60.33 Aligned_cols=113 Identities=10% Similarity=0.016 Sum_probs=70.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCC--CCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~--~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
|||.|+|+ |.+|+.++..|+..|. .+|+++|+.... ..... ..+.+. ....+......| + .+.++++
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k--~~g~a-~DL~~~~~~~~~~~~v~~~~--~----~~a~~~a 70 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGM--PQGKA-LDMRESSPIHGFDTRVTGTN--D----YGPTEDS 70 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTH--HHHHH-HHHHHHHHHHTCCCEEEEES--S----SGGGTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHH--HHHHH-HHHhccccccCCCcEEEECC--C----HHHhCCC
Confidence 68999996 9999999999999874 279998775421 00000 001000 001122332222 2 2467899
Q ss_pred CEEEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEee
Q 010005 86 STVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (520)
Q Consensus 86 D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~S 131 (520)
|+||-+|+.. ....+.....+.|+.-.+.+.+++.+++.+ .++.+|
T Consensus 71 DvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt 118 (314)
T 3nep_X 71 DVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVA 118 (314)
T ss_dssp SEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECC
T ss_pred CEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecC
Confidence 9999999873 333456778899999999999999998633 455444
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.016 Score=58.53 Aligned_cols=70 Identities=16% Similarity=0.249 Sum_probs=53.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
.++++|+|+| +|.+|+.+++.+.+.| ++|+++|.... .+. .. ---+.+..|..|.+.+.++.+.+
T Consensus 10 ~~~~~IlIlG-~G~lg~~la~aa~~lG-~~viv~d~~~~-----~p~-~~-------~ad~~~~~~~~d~~~l~~~~~~~ 74 (377)
T 3orq_A 10 KFGATIGIIG-GGQLGKMMAQSAQKMG-YKVVVLDPSED-----CPC-RY-------VAHEFIQAKYDDEKALNQLGQKC 74 (377)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESCTT-----CTT-GG-------GSSEEEECCTTCHHHHHHHHHHC
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEECCCC-----Chh-hh-------hCCEEEECCCCCHHHHHHHHHhC
Confidence 4568999998 7889999999999999 59999765431 111 00 01257789999999999999999
Q ss_pred CEEEE
Q 010005 86 STVFY 90 (520)
Q Consensus 86 D~Vih 90 (520)
|+|..
T Consensus 75 dvi~~ 79 (377)
T 3orq_A 75 DVITY 79 (377)
T ss_dssp SEEEE
T ss_pred Cccee
Confidence 98853
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0034 Score=62.75 Aligned_cols=74 Identities=22% Similarity=0.180 Sum_probs=48.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHH----
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL---- 82 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l---- 82 (520)
++++|||+||+|-+|..+++.+...| .+|++.|+. +.+......+ +.. ...|+.+.+++.+.+
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~G-a~V~~~~~~--------~~~~~~~~~~---g~~-~~~d~~~~~~~~~~~~~~~ 235 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMG-YRVLGIDGG--------EGKEELFRSI---GGE-VFIDFTKEKDIVGAVLKAT 235 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECS--------TTHHHHHHHT---TCC-EEEETTTCSCHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CcEEEEcCC--------HHHHHHHHHc---CCc-eEEecCccHhHHHHHHHHh
Confidence 46899999999999999999999999 499985543 2211111111 222 234776433333333
Q ss_pred c-CCCEEEEccc
Q 010005 83 E-GASTVFYVDA 93 (520)
Q Consensus 83 ~-~~D~Vih~aa 93 (520)
. ++|+||++++
T Consensus 236 ~~~~D~vi~~~g 247 (347)
T 2hcy_A 236 DGGAHGVINVSV 247 (347)
T ss_dssp TSCEEEEEECSS
T ss_pred CCCCCEEEECCC
Confidence 2 6899999987
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0028 Score=62.63 Aligned_cols=112 Identities=11% Similarity=0.100 Sum_probs=68.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCC--CCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~--~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
.|||.|+|| |.+|+.++..|+..+. .+|+++|+.... +.. .. ..+.+ ... .++.... | + .+++++
T Consensus 5 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~-~~g-~~-~dl~~~~~~~-~~~~v~~-~--~----~~a~~~ 72 (318)
T 1ez4_A 5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDR-TKG-DA-LDLEDAQAFT-APKKIYS-G--E----YSDCKD 72 (318)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHH-HHH-HH-HHHHGGGGGS-CCCEEEE-C--C----GGGGTT
T ss_pred CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchH-HHH-HH-HHHHHHHHhc-CCeEEEE-C--C----HHHhCC
Confidence 479999998 9999999999998873 379998875321 000 00 00000 011 2333332 2 2 334889
Q ss_pred CCEEEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEee
Q 010005 85 ASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (520)
Q Consensus 85 ~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~S 131 (520)
+|+||..++.. ............|+...+.+.+.+.+.+.. .++.+|
T Consensus 73 aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 121 (318)
T 1ez4_A 73 ADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (318)
T ss_dssp CSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 99999999872 222344567789999999999999998632 454443
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.038 Score=55.46 Aligned_cols=95 Identities=16% Similarity=0.107 Sum_probs=55.0
Q ss_pred CeEEEEcCCChhHHHHHH-HHHhcC--CcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 9 RTCVVLNGRGFVGRSLVL-RLLELG--KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~-~L~~~g--~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
|+|.|.||||++|+.+++ .|.++. ..+++.+. .|+.. ..+.+ +.... ...-|..+.+ .++++
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~s-------s~~aG-~~~~~-~~~~~--~~~~~~~~~~----~~~~~ 65 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFS-------TSQIG-VPAPN-FGKDA--GMLHDAFDIE----SLKQL 65 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEE-------SSSTT-SBCCC-SSSCC--CBCEETTCHH----HHTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEe-------ccccC-cCHHH-hCCCc--eEEEecCChh----HhccC
Confidence 589999999999999999 666655 12555532 23211 11111 11111 1122333433 25789
Q ss_pred CEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEeecc
Q 010005 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTA 133 (520)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~SS~ 133 (520)
|+||-+.+. ..+...+..+.+.|++ ++|=.||.
T Consensus 66 Dvvf~a~~~---------------~~s~~~~~~~~~~G~k~~VID~ss~ 99 (370)
T 3pzr_A 66 DAVITCQGG---------------SYTEKVYPALRQAGWKGYWIDAAST 99 (370)
T ss_dssp SEEEECSCH---------------HHHHHHHHHHHHTTCCCEEEECSST
T ss_pred CEEEECCCh---------------HHHHHHHHHHHHCCCCEEEEeCCch
Confidence 999988762 2234566677778874 56555543
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0044 Score=58.63 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=28.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEE-ecCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRV-TDST 42 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~-~D~~ 42 (520)
+||||.|+|+ |.+|+.+++.+.++++ ++++ +|+.
T Consensus 2 ~MmkI~ViGa-GrMG~~i~~~l~~~~~-eLva~~d~~ 36 (243)
T 3qy9_A 2 ASMKILLIGY-GAMNQRVARLAEEKGH-EIVGVIENT 36 (243)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEECSS
T ss_pred CceEEEEECc-CHHHHHHHHHHHhCCC-EEEEEEecC
Confidence 4689999999 9999999999999987 7665 5543
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.047 Score=54.96 Aligned_cols=96 Identities=13% Similarity=0.114 Sum_probs=55.9
Q ss_pred CCeEEEEcCCChhHHHHHH-HHHhcC--CcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 8 PRTCVVLNGRGFVGRSLVL-RLLELG--KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~-~L~~~g--~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
.++|.|.||||++|+.|++ .|.++. ..+++.+. .|+.. ..+.+ +.... ...-|..|.+. +++
T Consensus 4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~s-------s~~aG-~~~~~-~~~~~--~~v~~~~~~~~----~~~ 68 (377)
T 3uw3_A 4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFS-------TSNAG-GKAPS-FAKNE--TTLKDATSIDD----LKK 68 (377)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEE-------SSCTT-SBCCT-TCCSC--CBCEETTCHHH----HHT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEe-------chhcC-CCHHH-cCCCc--eEEEeCCChhH----hcC
Confidence 4799999999999999999 666655 12555532 22211 11111 11111 11224434433 468
Q ss_pred CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEeecc
Q 010005 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTA 133 (520)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~SS~ 133 (520)
+|+||-+.+. ..+...+..+.+.|++ ++|=.|+.
T Consensus 69 vDvvf~a~~~---------------~~s~~~~~~~~~~G~k~~VID~ss~ 103 (377)
T 3uw3_A 69 CDVIITCQGG---------------DYTNDVFPKLRAAGWNGYWIDAASS 103 (377)
T ss_dssp CSEEEECSCH---------------HHHHHHHHHHHHTTCCSEEEECSST
T ss_pred CCEEEECCCh---------------HHHHHHHHHHHHCCCCEEEEeCCcc
Confidence 9999988762 2235566777788874 66655554
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0086 Score=60.19 Aligned_cols=121 Identities=12% Similarity=-0.007 Sum_probs=73.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCc----EEEEecCCcccccCCCCC-CCCCCCCCCCCCcEEEEecCCCHHHHHHHH
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKC----IVRVTDSTQSLQLDPSES-NSLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~----~V~~~D~~~~~~l~r~~~-~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.+||.|+||+|.||++++-.|...+.. .|.+.|.........-.. .-.+.+.. .+-...+ .+.+ .-.+.+
T Consensus 32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~-~p~~~~v--~i~~--~~y~~~ 106 (375)
T 7mdh_A 32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSL-YPLLREV--SIGI--DPYEVF 106 (375)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTT-CTTEEEE--EEES--CHHHHT
T ss_pred CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhh-hhhcCCc--EEec--CCHHHh
Confidence 478999999999999999999887642 266644321100000000 00111100 0011111 1122 126678
Q ss_pred cCCCEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHC-C-CCEEEEeecc
Q 010005 83 EGASTVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACREC-K-VRRLVYNSTA 133 (520)
Q Consensus 83 ~~~D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-g-vkr~V~~SS~ 133 (520)
+++|+||-.||. .....+.....+.|+.-.+.+.+++.+. + -..++.+|..
T Consensus 107 ~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNP 160 (375)
T 7mdh_A 107 EDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNP 160 (375)
T ss_dssp TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence 999999999987 3344677889999999999999999874 3 2366666643
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.01 Score=58.15 Aligned_cols=112 Identities=15% Similarity=0.161 Sum_probs=64.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCc-EEEEecCCcccccCCCCCCCCCCCCC-CCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~-~V~~~D~~~~~~l~r~~~~~~l~~~~-~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
|||.|+|+ |.+|..++..|...|+. +|+++|+.... +. ... ..+.+.. .......... |. +.++++|
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~-~~-~~~-~~l~~~~~~~~~~~i~~~---~~----~a~~~aD 69 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDR-AQ-AEA-EDIAHAAPVSHGTRVWHG---GH----SELADAQ 69 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHH-HH-HHH-HHHTTSCCTTSCCEEEEE---CG----GGGTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHH-HH-HHH-HhhhhhhhhcCCeEEEEC---CH----HHhCCCC
Confidence 58999997 99999999999999832 79998876421 00 000 0000000 0022333322 22 3578999
Q ss_pred EEEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEee
Q 010005 87 TVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (520)
Q Consensus 87 ~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~S 131 (520)
+||-+++.. ............|+...+.+++.+.+.... .++.+|
T Consensus 70 vVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~t 116 (304)
T 2v6b_A 70 VVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTS 116 (304)
T ss_dssp EEEECC------------CHHHHHHHHHHHHHHHHHHCSSSEEEECS
T ss_pred EEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 999999752 222334456788999999999998887533 344433
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.031 Score=56.16 Aligned_cols=95 Identities=15% Similarity=0.140 Sum_probs=54.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHh-cCC--cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLE-LGK--CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~-~g~--~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
|+||.|.||+|++|+.+++.|++ +++ ..++.+. .++..+ ... ... +......|..|++. +++
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~-------~~s~G~-~v~-~~~--g~~i~~~~~~~~~~----~~~ 65 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFS-------TSQLGQ-AAP-SFG--GTTGTLQDAFDLEA----LKA 65 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEE-------SSSTTS-BCC-GGG--TCCCBCEETTCHHH----HHT
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEE-------eCCCCC-Ccc-ccC--CCceEEEecCChHH----hcC
Confidence 37999999999999999995444 442 2344422 222111 110 011 11233334545543 358
Q ss_pred CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEeec
Q 010005 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (520)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~SS 132 (520)
+|+||-+.+ ...+...+..+.+.|+| .+|=.||
T Consensus 66 ~DvVf~a~g---------------~~~s~~~a~~~~~~G~k~vVID~ss 99 (367)
T 1t4b_A 66 LDIIVTCQG---------------GDYTNEIYPKLRESGWQGYWIDAAS 99 (367)
T ss_dssp CSEEEECSC---------------HHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred CCEEEECCC---------------chhHHHHHHHHHHCCCCEEEEcCCh
Confidence 999998876 23445677778888984 3443343
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0034 Score=62.35 Aligned_cols=74 Identities=15% Similarity=0.153 Sum_probs=47.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHH----
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL---- 82 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l---- 82 (520)
.+++||||||+|-||..+++.+...| .+|++.|+.. .+....+.+ +.. ...|..+.+++.+.+
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~~--------~~~~~~~~~---g~~-~~~d~~~~~~~~~~~~~~~ 211 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKG-CKVVGAAGSD--------EKIAYLKQI---GFD-AAFNYKTVNSLEEALKKAS 211 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTT-CEEEEEESSH--------HHHHHHHHT---TCS-EEEETTSCSCHHHHHHHHC
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHhc---CCc-EEEecCCHHHHHHHHHHHh
Confidence 46899999999999999999999999 4999865432 110000111 121 234776622233222
Q ss_pred c-CCCEEEEccc
Q 010005 83 E-GASTVFYVDA 93 (520)
Q Consensus 83 ~-~~D~Vih~aa 93 (520)
. ++|+||+++|
T Consensus 212 ~~~~d~vi~~~g 223 (333)
T 1v3u_A 212 PDGYDCYFDNVG 223 (333)
T ss_dssp TTCEEEEEESSC
T ss_pred CCCCeEEEECCC
Confidence 2 5899999997
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.04 Score=55.78 Aligned_cols=69 Identities=22% Similarity=0.240 Sum_probs=51.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
.++++|+|+| +|.+|+.+++.+.+.| ++|+++|.... .+. ..---..+..|..|.+.+.++++.+
T Consensus 12 ~~~k~IlIlG-~G~~g~~la~aa~~~G-~~vi~~d~~~~-----~~~--------~~~ad~~~~~~~~d~~~l~~~~~~~ 76 (389)
T 3q2o_A 12 LPGKTIGIIG-GGQLGRMMALAAKEMG-YKIAVLDPTKN-----SPC--------AQVADIEIVASYDDLKAIQHLAEIS 76 (389)
T ss_dssp CTTSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESSTT-----CTT--------TTTCSEEEECCTTCHHHHHHHHHTC
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcC-CEEEEEeCCCC-----Cch--------HHhCCceEecCcCCHHHHHHHHHhC
Confidence 3567999998 7889999999999999 59999775431 011 0011245678999999999999999
Q ss_pred CEEE
Q 010005 86 STVF 89 (520)
Q Consensus 86 D~Vi 89 (520)
|+|.
T Consensus 77 dvI~ 80 (389)
T 3q2o_A 77 DVVT 80 (389)
T ss_dssp SEEE
T ss_pred CEee
Confidence 9884
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.027 Score=53.20 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=24.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhc-CCcEEEE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLEL-GKCIVRV 38 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~-g~~~V~~ 38 (520)
|||.|.|++|-+|+.+++.+.+. ++ +|++
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~-elva 30 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDL-TLSA 30 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTC-EEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCC-EEEE
Confidence 58999999999999999999876 64 7664
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.013 Score=58.06 Aligned_cols=113 Identities=8% Similarity=0.011 Sum_probs=68.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEE-ecCCCHHHHHHHHcC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQ-VDVRDISQIKKVLEG 84 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~-~Dl~d~~~l~~~l~~ 84 (520)
+|||.|+|| |.+|..++..|...|+.+|+++|+.... +... . ..+.... .....+... .|+ +++++
T Consensus 4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~-l~~~-~-~~l~~~~~~~~~~~~i~~t~d~-------~al~~ 72 (322)
T 1t2d_A 4 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNM-PHGK-A-LDTSHTNVMAYSNCKVSGSNTY-------DDLAG 72 (322)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSH-HHHH-H-HHHHTHHHHHTCCCCEEEECCG-------GGGTT
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHH-HHHH-H-HHHHhhhhhcCCCcEEEECCCH-------HHhCC
Confidence 479999997 9999999999999996369998875421 0000 0 0000000 001112221 232 35789
Q ss_pred CCEEEEcccCCCC-Ccc-----hhhHHhhhHHHHHHHHHHHHHCCCC-EEEEee
Q 010005 85 ASTVFYVDATDLN-TDD-----FYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (520)
Q Consensus 85 ~D~Vih~aa~~~~-~~~-----~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~S 131 (520)
+|+||-.++.+.. ... .......|+.-.+.+.+.+.+...+ .++.+|
T Consensus 73 aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 126 (322)
T 1t2d_A 73 ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 126 (322)
T ss_dssp CSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred CCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 9999999976211 112 3456777888888888888877532 444443
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0029 Score=65.93 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=55.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHH-HcCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGA 85 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~-l~~~ 85 (520)
..|||+|.| .|-+|+++++.|.++| ++|+++|.+... +......-++..+.||-++++-+.++ ++++
T Consensus 2 ~~M~iiI~G-~G~vG~~la~~L~~~~-~~v~vId~d~~~----------~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~a 69 (461)
T 4g65_A 2 NAMKIIILG-AGQVGGTLAENLVGEN-NDITIVDKDGDR----------LRELQDKYDLRVVNGHASHPDVLHEAGAQDA 69 (461)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHTCSTT-EEEEEEESCHHH----------HHHHHHHSSCEEEESCTTCHHHHHHHTTTTC
T ss_pred CcCEEEEEC-CCHHHHHHHHHHHHCC-CCEEEEECCHHH----------HHHHHHhcCcEEEEEcCCCHHHHHhcCCCcC
Confidence 468999998 6999999999999999 499997765421 11110112578999999999988877 6789
Q ss_pred CEEEEc
Q 010005 86 STVFYV 91 (520)
Q Consensus 86 D~Vih~ 91 (520)
|++|-+
T Consensus 70 d~~ia~ 75 (461)
T 4g65_A 70 DMLVAV 75 (461)
T ss_dssp SEEEEC
T ss_pred CEEEEE
Confidence 998843
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0098 Score=59.66 Aligned_cols=98 Identities=14% Similarity=0.096 Sum_probs=57.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCC---C-------CCcEEEEecCCCHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS---S-------GRAEYHQVDVRDIS 76 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~---~-------~~v~~~~~Dl~d~~ 76 (520)
+++||.|.||||++|+.+++.|.+....++..+.. .++..+ .+..... + ....+... |.+
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S------~~saGk-~~~~~~p~~~~~~~~~~~~~~~v~~~---~~~ 75 (359)
T 4dpk_A 6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAG------KGSVGK-PYGEVVRWQTVGQVPKEIADMEIKPT---DPK 75 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEE------STTTTS-BHHHHCCCCSSSCCCHHHHTCBCEEC---CGG
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEEC------chhcCC-ChhHhcccccccccccccccceEEeC---CHH
Confidence 35799999999999999999888776556766422 111111 1111000 0 01122221 222
Q ss_pred HHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccc
Q 010005 77 QIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (520)
Q Consensus 77 ~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~ 134 (520)
.++++|+||-+.+... +..+...+.+.|+ ++|=.|+..
T Consensus 76 ----~~~~vDvvf~a~p~~~---------------s~~~a~~~~~~G~-~vIDlSa~~ 113 (359)
T 4dpk_A 76 ----LMDDVDIIFSPLPQGA---------------AGPVEEQFAKEGF-PVISNSPDH 113 (359)
T ss_dssp ----GCTTCCEEEECCCTTT---------------HHHHHHHHHHTTC-EEEECSSTT
T ss_pred ----HhcCCCEEEECCChHH---------------HHHHHHHHHHCCC-EEEEcCCCc
Confidence 2468999998876422 2345666677887 678788764
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0098 Score=59.66 Aligned_cols=98 Identities=14% Similarity=0.096 Sum_probs=57.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCC---C-------CCcEEEEecCCCHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS---S-------GRAEYHQVDVRDIS 76 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~---~-------~~v~~~~~Dl~d~~ 76 (520)
+++||.|.||||++|+.+++.|.+....++..+.. .++..+ .+..... + ....+... |.+
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S------~~saGk-~~~~~~p~~~~~~~~~~~~~~~v~~~---~~~ 75 (359)
T 4dpl_A 6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAG------KGSVGK-PYGEVVRWQTVGQVPKEIADMEIKPT---DPK 75 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEE------STTTTS-BHHHHCCCCSSSCCCHHHHTCBCEEC---CGG
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEEC------chhcCC-ChhHhcccccccccccccccceEEeC---CHH
Confidence 35799999999999999999888776556766422 111111 1111000 0 01122221 222
Q ss_pred HHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccc
Q 010005 77 QIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (520)
Q Consensus 77 ~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~ 134 (520)
.++++|+||-+.+... +..+...+.+.|+ ++|=.|+..
T Consensus 76 ----~~~~vDvvf~a~p~~~---------------s~~~a~~~~~~G~-~vIDlSa~~ 113 (359)
T 4dpl_A 76 ----LMDDVDIIFSPLPQGA---------------AGPVEEQFAKEGF-PVISNSPDH 113 (359)
T ss_dssp ----GCTTCCEEEECCCTTT---------------HHHHHHHHHHTTC-EEEECSSTT
T ss_pred ----HhcCCCEEEECCChHH---------------HHHHHHHHHHCCC-EEEEcCCCc
Confidence 2468999998876422 2345666677887 678788764
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.032 Score=55.52 Aligned_cols=94 Identities=19% Similarity=0.149 Sum_probs=57.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCC--cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~--~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
+||.|.||||++|+.|++.|.++.+ .+++.+.. .++..+ .+. +. +.+...-|+.+ +.++++|
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s------~~~aG~-~~~--~~--~~~~~~~~~~~-----~~~~~~D 65 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFAS------ARSQGR-KLA--FR--GQEIEVEDAET-----ADPSGLD 65 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEEC------TTTSSC-EEE--ET--TEEEEEEETTT-----SCCTTCS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEEC------cccCCC-cee--ec--CCceEEEeCCH-----HHhccCC
Confidence 6899999999999999999888742 24555321 112111 111 11 12222233322 1246899
Q ss_pred EEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccc
Q 010005 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (520)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~ 134 (520)
+||-+.+. ..+...+..+.+.|+ ++|=.|+..
T Consensus 66 vvf~a~~~---------------~~s~~~a~~~~~~G~-~vID~Sa~~ 97 (344)
T 3tz6_A 66 IALFSAGS---------------AMSKVQAPRFAAAGV-TVIDNSSAW 97 (344)
T ss_dssp EEEECSCH---------------HHHHHHHHHHHHTTC-EEEECSSTT
T ss_pred EEEECCCh---------------HHHHHHHHHHHhCCC-EEEECCCcc
Confidence 99988762 223556677778887 677777764
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.028 Score=54.60 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=67.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCC----CCC---------CCCCCCCCCCcEEEEec
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSE----SNS---------LLPDSLSSGRAEYHQVD 71 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~----~~~---------~l~~~~~~~~v~~~~~D 71 (520)
+..+|+|.| .|-+|+.++..|...|.-+++++|.+. ..++.|.- +-+ .+.+....-.++.+..+
T Consensus 35 ~~~~VlVvG-aGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~~ 113 (292)
T 3h8v_A 35 RTFAVAIVG-VGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYN 113 (292)
T ss_dssp GGCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECCC
T ss_pred hCCeEEEEC-cCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEeccc
Confidence 357999998 788999999999999977899988765 11222210 000 00000111234556667
Q ss_pred CCCHHHHHHHH-----------cCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecc
Q 010005 72 VRDISQIKKVL-----------EGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (520)
Q Consensus 72 l~d~~~l~~~l-----------~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~ 133 (520)
+.+.+.+.+.+ +++|+||.+.. ++. .-..+-++|.+.++ .+|+.+..
T Consensus 114 l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~D------n~~--------~R~~in~~c~~~~~-Pli~~gv~ 171 (292)
T 3h8v_A 114 ITTVENFQHFMDRISNGGLEEGKPVDLVLSCVD------NFE--------ARMTINTACNELGQ-TWMESGVS 171 (292)
T ss_dssp TTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCS------SHH--------HHHHHHHHHHHHTC-CEEEEEEC
T ss_pred CCcHHHHHHHhhhhcccccccCCCCCEEEECCc------chh--------hhhHHHHHHHHhCC-CEEEeeee
Confidence 77656666655 58999997652 222 22346778888886 57776643
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0061 Score=61.09 Aligned_cols=74 Identities=19% Similarity=0.168 Sum_probs=48.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHH---HHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS---QIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~---~l~~~l~ 83 (520)
.+++|||+||+|-+|..+++.+...| .+|++.|+.. .+..+...+ +.. ...|..+.+ .+.+...
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~G-a~Vi~~~~~~--------~~~~~~~~~---ga~-~~~d~~~~~~~~~~~~~~~ 236 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAYG-LKILGTAGTE--------EGQKIVLQN---GAH-EVFNHREVNYIDKIKKYVG 236 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESSH--------HHHHHHHHT---TCS-EEEETTSTTHHHHHHHHHC
T ss_pred CcCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCh--------hHHHHHHHc---CCC-EEEeCCCchHHHHHHHHcC
Confidence 46799999999999999999999999 5899855432 211111111 122 234665543 3334443
Q ss_pred --CCCEEEEccc
Q 010005 84 --GASTVFYVDA 93 (520)
Q Consensus 84 --~~D~Vih~aa 93 (520)
++|+||++++
T Consensus 237 ~~~~D~vi~~~G 248 (351)
T 1yb5_A 237 EKGIDIIIEMLA 248 (351)
T ss_dssp TTCEEEEEESCH
T ss_pred CCCcEEEEECCC
Confidence 6899999987
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0093 Score=55.29 Aligned_cols=66 Identities=20% Similarity=0.175 Sum_probs=44.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
++|+|.|+| +|.+|+.+++.|.+.|+ +|+++|+.. ++ ... +...++... ++.++++++|
T Consensus 27 ~~~~I~iiG-~G~~G~~la~~l~~~g~-~V~~~~r~~--------~~--~~~-~~~~g~~~~--------~~~~~~~~~D 85 (215)
T 2vns_A 27 EAPKVGILG-SGDFARSLATRLVGSGF-KVVVGSRNP--------KR--TAR-LFPSAAQVT--------FQEEAVSSPE 85 (215)
T ss_dssp --CCEEEEC-CSHHHHHHHHHHHHTTC-CEEEEESSH--------HH--HHH-HSBTTSEEE--------EHHHHTTSCS
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCCC-EEEEEeCCH--------HH--HHH-HHHcCCcee--------cHHHHHhCCC
Confidence 568999999 89999999999999995 899965542 10 000 011133331 2456678999
Q ss_pred EEEEccc
Q 010005 87 TVFYVDA 93 (520)
Q Consensus 87 ~Vih~aa 93 (520)
+||.+..
T Consensus 86 vVi~av~ 92 (215)
T 2vns_A 86 VIFVAVF 92 (215)
T ss_dssp EEEECSC
T ss_pred EEEECCC
Confidence 9998765
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.012 Score=58.34 Aligned_cols=95 Identities=16% Similarity=0.085 Sum_probs=54.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCEE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~V 88 (520)
|||.|.||+|++|+.+++.|.+++|..+.+... ..++.....+. +....+.+. +. |++ . + ++|+|
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~-----~s~~~~g~~l~--~~g~~i~v~--~~-~~~---~-~-~~DvV 65 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARNFPLSELRLY-----ASPRSAGVRLA--FRGEEIPVE--PL-PEG---P-L-PVDLV 65 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEE-----ECGGGSSCEEE--ETTEEEEEE--EC-CSS---C-C-CCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEe-----eccccCCCEEE--EcCceEEEE--eC-Chh---h-c-CCCEE
Confidence 589999999999999999999877522111111 11111101111 111122222 22 222 2 3 89999
Q ss_pred EEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccc
Q 010005 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (520)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~ 134 (520)
|-+.+. ..+...+....+.|+ ++|-.|+..
T Consensus 66 ~~a~g~---------------~~s~~~a~~~~~~G~-~vId~s~~~ 95 (331)
T 2yv3_A 66 LASAGG---------------GISRAKALVWAEGGA-LVVDNSSAW 95 (331)
T ss_dssp EECSHH---------------HHHHHHHHHHHHTTC-EEEECSSSS
T ss_pred EECCCc---------------cchHHHHHHHHHCCC-EEEECCCcc
Confidence 988762 223455666677887 688888764
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0043 Score=61.40 Aligned_cols=74 Identities=15% Similarity=0.050 Sum_probs=47.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHH---HHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ---IKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~---l~~~l~ 83 (520)
.+++|||+||+|-+|..+++.+...| .+|++.|+.. .+......+ +.. ...|..+.+. +.+...
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G-~~V~~~~~~~--------~~~~~~~~~---g~~-~~~~~~~~~~~~~~~~~~~ 206 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALG-AKLIGTVGTA--------QKAQSALKA---GAW-QVINYREEDLVERLKEITG 206 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHT-CEEEEEESSH--------HHHHHHHHH---TCS-EEEETTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCH--------HHHHHHHHc---CCC-EEEECCCccHHHHHHHHhC
Confidence 46899999999999999999999999 4999955432 110000001 111 2246655443 333332
Q ss_pred --CCCEEEEccc
Q 010005 84 --GASTVFYVDA 93 (520)
Q Consensus 84 --~~D~Vih~aa 93 (520)
++|+||++++
T Consensus 207 ~~~~D~vi~~~g 218 (327)
T 1qor_A 207 GKKVRVVYDSVG 218 (327)
T ss_dssp TCCEEEEEECSC
T ss_pred CCCceEEEECCc
Confidence 5899999997
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0082 Score=59.07 Aligned_cols=112 Identities=17% Similarity=0.089 Sum_probs=71.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCC-CCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~~-~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
|||.|+|| |.+|+.++..|...+. .+|+++|+.... +.. . ...+.+.. ...+..... | + .++++++|
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k-~~g-~-a~dl~~~~~~~~~~~v~~-~--~----~~a~~~aD 69 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKL-AQA-H-AEDILHATPFAHPVWVWA-G--S----YGDLEGAR 69 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHH-HHH-H-HHHHHTTGGGSCCCEEEE-C--C----GGGGTTEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhH-HHH-H-HHHHHHhHhhcCCeEEEE-C--C----HHHhCCCC
Confidence 68999997 9999999999988762 379998875421 000 0 00010100 002333333 2 3 23478999
Q ss_pred EEEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEee
Q 010005 87 TVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (520)
Q Consensus 87 ~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~S 131 (520)
+||..++.. ............|+...+.+.+.+.+.+.. .++.+|
T Consensus 70 ~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 116 (310)
T 2xxj_A 70 AVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVAT 116 (310)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred EEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEec
Confidence 999999872 233455677889999999999999888632 444443
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.052 Score=53.27 Aligned_cols=117 Identities=12% Similarity=0.080 Sum_probs=69.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCc-EEEEecCCcccccCC-CCC-CCCCCCCCCCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDP-SES-NSLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~-~V~~~D~~~~~~l~r-~~~-~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
.++|||.|+|+ |.+|..++..|.+.|+. +|+++|+.... +.. ... .... . .. ........ .|. +.+
T Consensus 5 ~~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~-~~~~~~~~~~~~-~-~~-~~~~v~~~--~~~----~~~ 73 (319)
T 1lld_A 5 VKPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKER-VEAEVLDMQHGS-S-FY-PTVSIDGS--DDP----EIC 73 (319)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHH-HHHHHHHHHHTG-G-GS-TTCEEEEE--SCG----GGG
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhH-HHHHHHHHHhhh-h-hc-CCeEEEeC--CCH----HHh
Confidence 35689999997 99999999999999832 79997765311 000 000 0000 0 00 12222222 122 246
Q ss_pred cCCCEEEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecc
Q 010005 83 EGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (520)
Q Consensus 83 ~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~ 133 (520)
+++|+||-+++.. ....+.......|......+++.+++.+.+.+|...+.
T Consensus 74 ~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~N 125 (319)
T 1lld_A 74 RDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITN 125 (319)
T ss_dssp TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecC
Confidence 7899999998752 22344566778888888888888877643334433333
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0053 Score=60.94 Aligned_cols=75 Identities=17% Similarity=0.197 Sum_probs=48.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHH---HHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS---QIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~---~l~~~l~ 83 (520)
.+++|+|+||+|-+|..+++.+...| .+|++.|+.. .+......+ +.. ...|..+.+ .+.+...
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G-~~Vi~~~~~~--------~~~~~~~~~---g~~-~~~d~~~~~~~~~i~~~~~ 211 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLG-ATVIGTVSTE--------EKAETARKL---GCH-HTINYSTQDFAEVVREITG 211 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTT-CEEEEEESSH--------HHHHHHHHH---TCS-EEEETTTSCHHHHHHHHHT
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHc---CCC-EEEECCCHHHHHHHHHHhC
Confidence 46799999999999999999999999 4999965432 110000001 111 224665543 3334432
Q ss_pred --CCCEEEEcccC
Q 010005 84 --GASTVFYVDAT 94 (520)
Q Consensus 84 --~~D~Vih~aa~ 94 (520)
++|+||+++|.
T Consensus 212 ~~~~d~vi~~~g~ 224 (333)
T 1wly_A 212 GKGVDVVYDSIGK 224 (333)
T ss_dssp TCCEEEEEECSCT
T ss_pred CCCCeEEEECCcH
Confidence 58999999973
|
| >3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.048 Score=54.93 Aligned_cols=68 Identities=22% Similarity=0.365 Sum_probs=50.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCE
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~ 87 (520)
|++|+|+|+ |..|+.+++.|.+.| ++|+++|.... .+. ... .-..+..|..|.+.+.++.+++|+
T Consensus 1 M~~Ililg~-g~~g~~~~~a~~~~G-~~v~~~~~~~~-----~~~-----~~~---~~~~~~~~~~d~~~l~~~~~~~d~ 65 (380)
T 3ax6_A 1 MKKIGIIGG-GQLGKMMTLEAKKMG-FYVIVLDPTPR-----SPA-----GQV---ADEQIVAGFFDSERIEDLVKGSDV 65 (380)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESSTT-----CTT-----GGG---SSEEEECCTTCHHHHHHHHHTCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCCCC-----Cch-----hhh---CceEEECCCCCHHHHHHHHhcCCE
Confidence 378999996 899999999999999 48888665321 000 001 124667899999999998899999
Q ss_pred EEE
Q 010005 88 VFY 90 (520)
Q Consensus 88 Vih 90 (520)
|+-
T Consensus 66 v~~ 68 (380)
T 3ax6_A 66 TTY 68 (380)
T ss_dssp EEE
T ss_pred EEe
Confidence 874
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.011 Score=58.28 Aligned_cols=82 Identities=10% Similarity=0.133 Sum_probs=54.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCC-CCCcEEEEecCCCHHHHHHHHcC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLS-SGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~-~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
++++++|+|+ |-+|+.++..|.+.|..+|+++++... ..++ ..+.+.+. ..+......++.|.+++.+.+.+
T Consensus 153 ~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~-----~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 226 (315)
T 3tnl_A 153 IGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDD-----FYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAE 226 (315)
T ss_dssp TTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSST-----THHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHT
T ss_pred cCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCc-----hHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcC
Confidence 5689999996 899999999999999548998544310 0110 00000000 01234555677777778888889
Q ss_pred CCEEEEcccC
Q 010005 85 ASTVFYVDAT 94 (520)
Q Consensus 85 ~D~Vih~aa~ 94 (520)
+|+||++...
T Consensus 227 aDiIINaTp~ 236 (315)
T 3tnl_A 227 SVIFTNATGV 236 (315)
T ss_dssp CSEEEECSST
T ss_pred CCEEEECccC
Confidence 9999998765
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.018 Score=56.68 Aligned_cols=112 Identities=13% Similarity=0.042 Sum_probs=68.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhc--CCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEEecCCCHHHHHHHHcC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLEL--GKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~--g~~~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
|||.|+|+ |.+|..++..|.+. | ++|+++|+.... +. ... ..+.+.. .......... .|. .+ +++
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g-~~V~l~D~~~~~-~~-~~~-~~l~~~~~~~~~~~~i~~t--~d~---~~-l~~ 69 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLA-RELVLLDVVEGI-PQ-GKA-LDMYESGPVGLFDTKVTGS--NDY---AD-TAN 69 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCC-SEEEEECSSSSH-HH-HHH-HHHHTTHHHHTCCCEEEEE--SCG---GG-GTT
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCC-CEEEEEeCChhH-HH-HHH-HhHHhhhhcccCCcEEEEC--CCH---HH-HCC
Confidence 58999997 99999999999985 6 599998775421 00 000 0000000 0011122111 232 23 679
Q ss_pred CCEEEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEee
Q 010005 85 ASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (520)
Q Consensus 85 ~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~S 131 (520)
+|+||-+++.. ............|+.....+++.+.+...+ .++.+|
T Consensus 70 aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~t 118 (310)
T 1guz_A 70 SDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS 118 (310)
T ss_dssp CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 99999999763 222335667788999999999998887532 445443
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.007 Score=60.66 Aligned_cols=75 Identities=16% Similarity=0.139 Sum_probs=48.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHH---HHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS---QIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~---~l~~~l~ 83 (520)
.+.+|||+||+|-||..+++.+...| .+|++.|+.. .+......+ +.. ...|..+.+ ++.+...
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~G-a~Vi~~~~~~--------~~~~~~~~~---g~~-~~~~~~~~~~~~~~~~~~~ 228 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAG-AIPLVTAGSQ--------KKLQMAEKL---GAA-AGFNYKKEDFSEATLKFTK 228 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHH---TCS-EEEETTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcC-CEEEEEeCCH--------HHHHHHHHc---CCc-EEEecCChHHHHHHHHHhc
Confidence 46799999999999999999999999 5899855432 210000111 111 234665543 3333332
Q ss_pred --CCCEEEEcccC
Q 010005 84 --GASTVFYVDAT 94 (520)
Q Consensus 84 --~~D~Vih~aa~ 94 (520)
++|+||+++|.
T Consensus 229 ~~~~d~vi~~~G~ 241 (354)
T 2j8z_A 229 GAGVNLILDCIGG 241 (354)
T ss_dssp TSCEEEEEESSCG
T ss_pred CCCceEEEECCCc
Confidence 58999999973
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.11 Score=51.70 Aligned_cols=113 Identities=8% Similarity=0.023 Sum_probs=71.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--CCCCCCC--------C--CCCC--cEEEEec
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--NSLLPDS--------L--SSGR--AEYHQVD 71 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~--~~~l~~~--------~--~~~~--v~~~~~D 71 (520)
..+|+|.| .|-+|+++++.|...|..+++++|.+. ..++.|.-- ....... + ..+. ++.+..+
T Consensus 36 ~~~VlivG-~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 114 (346)
T 1y8q_A 36 ASRVLLVG-LKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTED 114 (346)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEECSC
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEecc
Confidence 47899998 678999999999999977899998754 111222210 0000000 0 0133 3444445
Q ss_pred CCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccccccc
Q 010005 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFD 138 (520)
Q Consensus 72 l~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~ 138 (520)
+.+ ...+.++++|+||.+.. + ...-..+-++|++.++ .+|..++.+.+|.
T Consensus 115 ~~~--~~~~~~~~~dvVv~~~d------~--------~~~r~~ln~~~~~~~i-p~i~~~~~G~~G~ 164 (346)
T 1y8q_A 115 IEK--KPESFFTQFDAVCLTCC------S--------RDVIVKVDQICHKNSI-KFFTGDVFGYHGY 164 (346)
T ss_dssp GGG--CCHHHHTTCSEEEEESC------C--------HHHHHHHHHHHHHTTC-EEEEEEEEBTEEE
T ss_pred cCc--chHHHhcCCCEEEEcCC------C--------HHHHHHHHHHHHHcCC-CEEEEeecccEEE
Confidence 533 23567889999997642 1 2233457788999986 7898888777763
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=95.23 E-value=0.065 Score=45.83 Aligned_cols=32 Identities=19% Similarity=0.144 Sum_probs=27.4
Q ss_pred CCCeEEEEcCC---ChhHHHHHHHHHhcCCcEEEEe
Q 010005 7 IPRTCVVLNGR---GFVGRSLVLRLLELGKCIVRVT 39 (520)
Q Consensus 7 ~~~~ILVtGat---GfIG~~lv~~L~~~g~~~V~~~ 39 (520)
+.++|.|.|++ |-+|..+++.|++.| ++|+.+
T Consensus 13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G-~~V~~v 47 (138)
T 1y81_A 13 EFRKIALVGASKNPAKYGNIILKDLLSKG-FEVLPV 47 (138)
T ss_dssp -CCEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEE
T ss_pred CCCeEEEEeecCCCCCHHHHHHHHHHHCC-CEEEEe
Confidence 35799999987 899999999999999 587773
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0068 Score=60.39 Aligned_cols=34 Identities=21% Similarity=0.076 Sum_probs=30.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
.+++|||+||+|-+|..+++.+...|. +|++.|+
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~ 188 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAG 188 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 468999999999999999999999994 8998554
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.035 Score=54.86 Aligned_cols=113 Identities=13% Similarity=-0.016 Sum_probs=73.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCC--CCCCCCcEEE-EecCCCHHHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYH-QVDVRDISQIKKVL 82 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~--~~~~~~v~~~-~~Dl~d~~~l~~~l 82 (520)
..+||.|+|+ |.+|+.++..|...|. .+|+++|+.... ..... ..+.+ ... ...... ..|+. + +
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~--~~g~a-~DL~~~~~~~-~~~~i~~t~d~~------~-~ 87 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDK--LKGEM-MDLEHGSLFL-HTAKIVSGKDYS------V-S 87 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHH--HHHHH-HHHHHHGGGS-CCSEEEEESSSC------S-C
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHH--HHHHH-HHhhhhhhcc-cCCeEEEcCCHH------H-h
Confidence 4589999998 9999999999999884 379998875421 00000 00000 000 112222 33432 2 6
Q ss_pred cCCCEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEee
Q 010005 83 EGASTVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (520)
Q Consensus 83 ~~~D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~S 131 (520)
+++|+||-.||. .....+.......|+.-.+.+.+.+.+.+.. .++.+|
T Consensus 88 ~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvt 138 (330)
T 3ldh_A 88 AGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHP 138 (330)
T ss_dssp SSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCC
Confidence 789999999987 3334556778899999999999999988633 455444
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.034 Score=54.24 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=42.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
++++|.|+||.|.+|+.++..|.+.|+ +|+++| |++. ....++++++|
T Consensus 20 ~~~~I~iIGg~G~mG~~la~~l~~~G~-~V~~~~--------~~~~-----------------------~~~~~~~~~aD 67 (298)
T 2pv7_A 20 DIHKIVIVGGYGKLGGLFARYLRASGY-PISILD--------REDW-----------------------AVAESILANAD 67 (298)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTC-CEEEEC--------TTCG-----------------------GGHHHHHTTCS
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHhCCC-eEEEEE--------CCcc-----------------------cCHHHHhcCCC
Confidence 346899999999999999999999994 899954 3321 12456778999
Q ss_pred EEEEccc
Q 010005 87 TVFYVDA 93 (520)
Q Consensus 87 ~Vih~aa 93 (520)
+||-+..
T Consensus 68 vVilavp 74 (298)
T 2pv7_A 68 VVIVSVP 74 (298)
T ss_dssp EEEECSC
T ss_pred EEEEeCC
Confidence 9997763
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=95.10 E-value=0.031 Score=57.37 Aligned_cols=68 Identities=15% Similarity=0.117 Sum_probs=51.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
++++|+|+| +|.+|+.+++.+.+.| ++|+++|.... .+. .. -.-+.+..|..|.+.+.++.+++|
T Consensus 34 ~~~~IlIlG-~G~lg~~~~~aa~~lG-~~v~v~d~~~~-----~p~-----~~---~ad~~~~~~~~d~~~l~~~a~~~D 98 (419)
T 4e4t_A 34 PGAWLGMVG-GGQLGRMFCFAAQSMG-YRVAVLDPDPA-----SPA-----GA---VADRHLRAAYDDEAALAELAGLCE 98 (419)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSCTT-----CHH-----HH---HSSEEECCCTTCHHHHHHHHHHCS
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEECCCCc-----Cch-----hh---hCCEEEECCcCCHHHHHHHHhcCC
Confidence 467999998 6899999999999999 58888664321 000 00 012466789999999999999999
Q ss_pred EEE
Q 010005 87 TVF 89 (520)
Q Consensus 87 ~Vi 89 (520)
+|+
T Consensus 99 ~V~ 101 (419)
T 4e4t_A 99 AVS 101 (419)
T ss_dssp EEE
T ss_pred EEE
Confidence 998
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.022 Score=52.34 Aligned_cols=33 Identities=33% Similarity=0.520 Sum_probs=29.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~ 42 (520)
|+|+|+||+|.+|+++++.|.+.| ++|+++|+.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g-~~V~~~~r~ 33 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLG-HEIVVGSRR 33 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT-CEEEEEESS
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCC-CEEEEEeCC
Confidence 589999999999999999999999 499996653
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.0099 Score=58.98 Aligned_cols=74 Identities=15% Similarity=0.064 Sum_probs=47.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCC-CCCCCCCcEEEEecCCCHHHHH---HHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLP-DSLSSGRAEYHQVDVRDISQIK---KVL 82 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~-~~~~~~~v~~~~~Dl~d~~~l~---~~l 82 (520)
++++|||+||+|-||..+++.+...|. +|++.|+.. .+.... +.+ +.. ...|..+.+..+ +..
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~--------~~~~~~~~~~---g~~-~~~~~~~~~~~~~~~~~~ 215 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGA--------EKCRFLVEEL---GFD-GAIDYKNEDLAAGLKREC 215 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSH--------HHHHHHHHTT---CCS-EEEETTTSCHHHHHHHHC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH--------HHHHHHHHHc---CCC-EEEECCCHHHHHHHHHhc
Confidence 468999999999999999999999995 999955432 211110 111 222 224555543222 222
Q ss_pred -cCCCEEEEccc
Q 010005 83 -EGASTVFYVDA 93 (520)
Q Consensus 83 -~~~D~Vih~aa 93 (520)
.++|+||++++
T Consensus 216 ~~~~d~vi~~~g 227 (336)
T 4b7c_A 216 PKGIDVFFDNVG 227 (336)
T ss_dssp TTCEEEEEESSC
T ss_pred CCCceEEEECCC
Confidence 25899999987
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.085 Score=53.22 Aligned_cols=70 Identities=16% Similarity=0.264 Sum_probs=51.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--C
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~ 84 (520)
++|+|||+|+ |.+|..+++.+.+.| ++|+++|.... .+. ... --+.+..|..|.+.+.++++ +
T Consensus 10 ~~~~ili~g~-g~~~~~~~~a~~~~G-~~v~~~~~~~~-----~~~-----~~~---~d~~~~~~~~d~~~l~~~~~~~~ 74 (391)
T 1kjq_A 10 AATRVMLLGS-GELGKEVAIECQRLG-VEVIAVDRYAD-----APA-----MHV---AHRSHVINMLDGDALRRVVELEK 74 (391)
T ss_dssp TCCEEEEESC-SHHHHHHHHHHHTTT-CEEEEEESSTT-----CGG-----GGG---SSEEEECCTTCHHHHHHHHHHHC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcC-CEEEEEECCCC-----Cch-----hhh---ccceEECCCCCHHHHHHHHHHcC
Confidence 5689999986 799999999999999 58988775431 000 000 12456788889888888775 7
Q ss_pred CCEEEEc
Q 010005 85 ASTVFYV 91 (520)
Q Consensus 85 ~D~Vih~ 91 (520)
+|+|+..
T Consensus 75 ~d~v~~~ 81 (391)
T 1kjq_A 75 PHYIVPE 81 (391)
T ss_dssp CSEEEEC
T ss_pred CCEEEEC
Confidence 9999853
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=94.97 E-value=0.076 Score=51.86 Aligned_cols=112 Identities=14% Similarity=0.118 Sum_probs=69.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
+++||.|+|| |.+|+.++..|+..|. .+|+.+|+... +......+.. ...+++.. ..|+ +.++++
T Consensus 13 ~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~----~~g~a~dl~~-~~~~~i~~-t~d~-------~~l~~a 78 (303)
T 2i6t_A 13 TVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEG----TKGATMDLEI-FNLPNVEI-SKDL-------SASAHS 78 (303)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC---------CHHHHHH-HTCTTEEE-ESCG-------GGGTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcc----hHHHHHHHhh-hcCCCeEE-eCCH-------HHHCCC
Confidence 4579999995 9999999999999883 27999887542 1100001111 11123333 2332 347899
Q ss_pred CEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEeec
Q 010005 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (520)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~SS 132 (520)
|+||-.++..............|+.-.+.+++.+.+.... .++.+|-
T Consensus 79 D~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sN 126 (303)
T 2i6t_A 79 KVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQ 126 (303)
T ss_dssp SEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSS
T ss_pred CEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 9999999874333455667888898899999999886532 4444543
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.011 Score=59.10 Aligned_cols=72 Identities=22% Similarity=0.221 Sum_probs=46.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCc-EEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHH---HHHHHHc
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDIS---QIKKVLE 83 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~-~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~---~l~~~l~ 83 (520)
++|||+||+|-||..+++.+...| . +|++.|+.. .+. ...+.+ +.. ...|..+.+ .+.+...
T Consensus 162 ~~vlI~GasggiG~~~~~~a~~~G-a~~Vi~~~~~~--------~~~~~~~~~~---g~~-~~~d~~~~~~~~~~~~~~~ 228 (357)
T 2zb4_A 162 KTMVVSGAAGACGSVAGQIGHFLG-CSRVVGICGTH--------EKCILLTSEL---GFD-AAINYKKDNVAEQLRESCP 228 (357)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTT-CSEEEEEESCH--------HHHHHHHHTS---CCS-EEEETTTSCHHHHHHHHCT
T ss_pred cEEEEECCCcHHHHHHHHHHHHCC-CCeEEEEeCCH--------HHHHHHHHHc---CCc-eEEecCchHHHHHHHHhcC
Confidence 799999999999999999999999 5 888855432 110 010101 122 234666543 2333222
Q ss_pred -CCCEEEEccc
Q 010005 84 -GASTVFYVDA 93 (520)
Q Consensus 84 -~~D~Vih~aa 93 (520)
++|+||+++|
T Consensus 229 ~~~d~vi~~~G 239 (357)
T 2zb4_A 229 AGVDVYFDNVG 239 (357)
T ss_dssp TCEEEEEESCC
T ss_pred CCCCEEEECCC
Confidence 5899999997
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=94.95 E-value=0.024 Score=55.85 Aligned_cols=114 Identities=11% Similarity=0.090 Sum_probs=66.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC--CCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~--~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
.|+|.|+|+ |.+|+.++..|.+.|+.+|+++|+.... +... . ..+... ........... .| . +.++++
T Consensus 4 ~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~-~~~~-~-~~l~~~~~~~~~~~~i~~t--~d---~-~a~~~a 73 (317)
T 2ewd_A 4 RRKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGI-PQGK-A-LDITHSMVMFGSTSKVIGT--DD---Y-ADISGS 73 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSH-HHHH-H-HHHHHHHHHHTCCCCEEEE--SC---G-GGGTTC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchH-HHHH-H-HHHHhhhhhcCCCcEEEEC--CC---H-HHhCCC
Confidence 479999997 9999999999999995379997765311 0000 0 000000 00001111111 12 1 356789
Q ss_pred CEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEee
Q 010005 86 STVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (520)
Q Consensus 86 D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~S 131 (520)
|+||-+++. .............|....+.+++.+.+.... .++.+|
T Consensus 74 DiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~s 121 (317)
T 2ewd_A 74 DVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICIT 121 (317)
T ss_dssp SEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred CEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 999999976 2222334455667777778888888776422 344444
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=94.90 E-value=0.077 Score=53.03 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=69.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--CCCC------------CCCCCCCCcEEEEec
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--NSLL------------PDSLSSGRAEYHQVD 71 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~--~~~l------------~~~~~~~~v~~~~~D 71 (520)
..+|+|.|+ |-+|++++..|...|.-+++++|.+. ..++.|..- .... .+....-.++.+..+
T Consensus 118 ~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~ 196 (353)
T 3h5n_A 118 NAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALN 196 (353)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEECC
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEeecc
Confidence 579999985 77999999999999977899988764 112333310 0000 000112245566777
Q ss_pred CCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecc
Q 010005 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (520)
Q Consensus 72 l~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~ 133 (520)
+.+...+.+ ++++|+||.+.. ++.. .-..+-++|.+.++ .+|+.+..
T Consensus 197 i~~~~~~~~-~~~~DlVvd~~D------n~~~-------~r~~ln~~c~~~~~-p~i~~~~~ 243 (353)
T 3h5n_A 197 INDYTDLHK-VPEADIWVVSAD------HPFN-------LINWVNKYCVRANQ-PYINAGYV 243 (353)
T ss_dssp CCSGGGGGG-SCCCSEEEECCC------CSTT-------HHHHHHHHHHHTTC-CEEEEEEE
T ss_pred cCchhhhhH-hccCCEEEEecC------ChHH-------HHHHHHHHHHHhCC-CEEEEEEe
Confidence 766554666 889999998752 1210 11235678999987 57877654
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=94.89 E-value=0.0083 Score=57.81 Aligned_cols=33 Identities=27% Similarity=0.477 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
++++++|+|+ |-+|+.++..|.+.| .+|++.|+
T Consensus 118 ~~k~vlViGa-Gg~g~a~a~~L~~~G-~~V~v~~R 150 (271)
T 1nyt_A 118 PGLRILLIGA-GGASRGVLLPLLSLD-CAVTITNR 150 (271)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECS
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHcC-CEEEEEEC
Confidence 4689999998 779999999999999 69999554
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.036 Score=55.27 Aligned_cols=95 Identities=14% Similarity=0.098 Sum_probs=57.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHH---HHHHHH--c
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS---QIKKVL--E 83 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~---~l~~~l--~ 83 (520)
++++|+||+|-+|...++.+...|. +|++.|.. +.+..+...+ +... ..|..+.+ .+.+.. +
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~Ga-~Vi~~~~~--------~~~~~~~~~~---Ga~~-~~~~~~~~~~~~v~~~~~~~ 232 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEEGF-RPIVTVRR--------DEQIALLKDI---GAAH-VLNEKAPDFEATLREVMKAE 232 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESC--------GGGHHHHHHH---TCSE-EEETTSTTHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC--------HHHHHHHHHc---CCCE-EEECCcHHHHHHHHHHhcCC
Confidence 6899999999999999999999995 99995543 2211111111 1221 23444432 333333 3
Q ss_pred CCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecc
Q 010005 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (520)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~ 133 (520)
++|+||++++.. .+...++.++..| ++|.+++.
T Consensus 233 g~D~vid~~g~~---------------~~~~~~~~l~~~G--~iv~~G~~ 265 (349)
T 3pi7_A 233 QPRIFLDAVTGP---------------LASAIFNAMPKRA--RWIIYGRL 265 (349)
T ss_dssp CCCEEEESSCHH---------------HHHHHHHHSCTTC--EEEECCCS
T ss_pred CCcEEEECCCCh---------------hHHHHHhhhcCCC--EEEEEecc
Confidence 799999998731 1133455554444 78877654
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.077 Score=54.07 Aligned_cols=70 Identities=21% Similarity=0.261 Sum_probs=52.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
++++|+|+| +|.+|+.+++.+.+.| ++|+++| ... .+.. .. . .....+.+|..|.+.+.++.+.+|
T Consensus 23 ~~~~I~ilG-gG~lg~~l~~aa~~lG-~~v~~~d-~~~---~p~~---~~----a-d~~~~~~~~~~d~~~l~~~a~~~d 88 (403)
T 3k5i_A 23 NSRKVGVLG-GGQLGRMLVESANRLN-IQVNVLD-ADN---SPAK---QI----S-AHDGHVTGSFKEREAVRQLAKTCD 88 (403)
T ss_dssp SCCEEEEEC-CSHHHHHHHHHHHHHT-CEEEEEE-STT---CTTG---GG----C-CSSCCEESCTTCHHHHHHHHTTCS
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEE-CCC---CcHH---Hh----c-cccceeecCCCCHHHHHHHHHhCC
Confidence 367999999 5899999999999999 6999977 421 1111 01 0 112457889999999999999999
Q ss_pred EEEE
Q 010005 87 TVFY 90 (520)
Q Consensus 87 ~Vih 90 (520)
+|+-
T Consensus 89 ~i~~ 92 (403)
T 3k5i_A 89 VVTA 92 (403)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8864
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=94.78 E-value=0.018 Score=56.23 Aligned_cols=74 Identities=20% Similarity=0.168 Sum_probs=48.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
.+.+|||+||+|-+|...++.+...|. +|++.|+. +.+..+...+ +... ..|..+.+++.+.++++|
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~--------~~~~~~~~~~---ga~~-~~~~~~~~~~~~~~~~~d 191 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASR--------PEKLALPLAL---GAEE-AATYAEVPERAKAWGGLD 191 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESS--------GGGSHHHHHT---TCSE-EEEGGGHHHHHHHTTSEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC--------HHHHHHHHhc---CCCE-EEECCcchhHHHHhcCce
Confidence 467999999999999999999999995 89995543 2211111111 2222 246555133444558899
Q ss_pred EEEEcccC
Q 010005 87 TVFYVDAT 94 (520)
Q Consensus 87 ~Vih~aa~ 94 (520)
+||+ ++.
T Consensus 192 ~vid-~g~ 198 (302)
T 1iz0_A 192 LVLE-VRG 198 (302)
T ss_dssp EEEE-CSC
T ss_pred EEEE-CCH
Confidence 9999 763
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.062 Score=52.53 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=26.2
Q ss_pred CCe-EEEEc-CC-----------------ChhHHHHHHHHHhcCCcEEEEe
Q 010005 8 PRT-CVVLN-GR-----------------GFVGRSLVLRLLELGKCIVRVT 39 (520)
Q Consensus 8 ~~~-ILVtG-at-----------------GfIG~~lv~~L~~~g~~~V~~~ 39 (520)
+++ ||||+ || |-.|.+++++++++| +.|+.+
T Consensus 36 gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~G-a~V~lv 85 (313)
T 1p9o_A 36 GRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAG-YGVLFL 85 (313)
T ss_dssp TCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTT-CEEEEE
T ss_pred CCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCC-CEEEEE
Confidence 466 89985 45 899999999999999 699884
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.025 Score=55.55 Aligned_cols=111 Identities=11% Similarity=0.023 Sum_probs=70.3
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC--CCCCCcEEEE-ecCCCHHHHHHHHcCCC
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQ-VDVRDISQIKKVLEGAS 86 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~--~~~~~v~~~~-~Dl~d~~~l~~~l~~~D 86 (520)
||.|+|| |.+|+.++..|...|..+|+.+|+.... + +... ..+.+. .......... .| . +.++++|
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~~-~-~g~~-~dl~~~~~~~~~~~~i~~t~d---~----~a~~~aD 69 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGK-P-QGEA-LDLAHAAAELGVDIRISGSNS---Y----EDMRGSD 69 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTTH-H-HHHH-HHHHHHHHHHTCCCCEEEESC---G----GGGTTCS
T ss_pred CEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChhh-H-HHHH-HHHHHhhhhcCCCeEEEECCC---H----HHhCCCC
Confidence 6899998 9999999999988885369998875321 0 0000 000000 0001222222 23 2 3578999
Q ss_pred EEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEee
Q 010005 87 TVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (520)
Q Consensus 87 ~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~S 131 (520)
+||-.++. .............|+.-.+.+++.+.+.... .+|.+|
T Consensus 70 ~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 116 (308)
T 2d4a_B 70 IVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITT 116 (308)
T ss_dssp EEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred EEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 99999987 2233455677889999999999999886532 555554
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.019 Score=57.65 Aligned_cols=98 Identities=17% Similarity=0.081 Sum_probs=58.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHH---HHHHHH-
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS---QIKKVL- 82 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~---~l~~~l- 82 (520)
.+.+|||+||+|-+|..+++.+...|. +|++.|+.. .+..+...+ +... ..|..+.+ .+.+..
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~--------~~~~~~~~~---Ga~~-~~~~~~~~~~~~~~~~~~ 229 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSD--------EKSAFLKSL---GCDR-PINYKTEPVGTVLKQEYP 229 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSH--------HHHHHHHHT---TCSE-EEETTTSCHHHHHHHHCT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCH--------HHHHHHHHc---CCcE-EEecCChhHHHHHHHhcC
Confidence 467999999999999999999999994 899855432 110110111 1222 23444322 222222
Q ss_pred cCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccc
Q 010005 83 EGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (520)
Q Consensus 83 ~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~ 134 (520)
.++|+||++++. ......+++++..| |+|.+++..
T Consensus 230 ~g~D~vid~~g~---------------~~~~~~~~~l~~~G--~iv~~g~~~ 264 (362)
T 2c0c_A 230 EGVDVVYESVGG---------------AMFDLAVDALATKG--RLIVIGFIS 264 (362)
T ss_dssp TCEEEEEECSCT---------------HHHHHHHHHEEEEE--EEEECCCGG
T ss_pred CCCCEEEECCCH---------------HHHHHHHHHHhcCC--EEEEEeCCC
Confidence 268999999872 01233455555544 788887654
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=94.65 E-value=0.18 Score=49.89 Aligned_cols=31 Identities=13% Similarity=0.010 Sum_probs=25.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEe
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~ 39 (520)
++||.|.|+ |.||+.+++.|.++...+|+++
T Consensus 3 ~ikVgI~G~-GrIGr~l~R~l~~~p~vevvaI 33 (337)
T 3e5r_O 3 KIKIGINGF-GRIGRLVARVALQSEDVELVAV 33 (337)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEE
T ss_pred ceEEEEECc-CHHHHHHHHHHhCCCCeEEEEE
Confidence 469999999 9999999999998754565553
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.032 Score=55.21 Aligned_cols=115 Identities=10% Similarity=0.042 Sum_probs=67.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCC-C-CCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSE-S-NSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~-~-~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
++|||.|+|| |.+|..++..|...|+.+|+++|+.... +.... . ...........++.. ..|+ +.+++
T Consensus 13 ~~~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~-l~~~~~~l~~~~~~~~~~~~i~~-t~d~-------~al~~ 82 (328)
T 2hjr_A 13 MRKKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGV-PQGKALDLNHCMALIGSPAKIFG-ENNY-------EYLQN 82 (328)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTH-HHHHHHHHHHHHHHHTCCCCEEE-ESCG-------GGGTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHH-HHHHHHHHHhHhhccCCCCEEEE-CCCH-------HHHCC
Confidence 3479999997 9999999999999995379998875421 10000 0 000000000112221 1232 35789
Q ss_pred CCEEEEcccCCC-CCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEee
Q 010005 85 ASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (520)
Q Consensus 85 ~D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~S 131 (520)
+|+||-.++.+. ...........|+.-.+.+++.+.+.... .++.+|
T Consensus 83 aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 131 (328)
T 2hjr_A 83 SDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICIT 131 (328)
T ss_dssp CSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEec
Confidence 999999987621 11223345677888888888888776432 344444
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=94.49 E-value=0.17 Score=54.24 Aligned_cols=114 Identities=13% Similarity=0.071 Sum_probs=72.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC-----CC---------CCCCCCCCCCcEEEEec
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES-----NS---------LLPDSLSSGRAEYHQVD 71 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~-----~~---------~l~~~~~~~~v~~~~~D 71 (520)
..+|+|.| .|-+|+++++.|...|..+++++|.+. ..++.|..- -+ .+.+....-.++.+..+
T Consensus 17 ~s~VlVVG-aGGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~v~V~a~~~~ 95 (640)
T 1y8q_B 17 GGRVLVVG-AGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDS 95 (640)
T ss_dssp HCEEEEEC-CSHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTTCEEEEEESC
T ss_pred cCeEEEEC-cCHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 36899998 588999999999999977899998764 122333310 00 00111112345566777
Q ss_pred CCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccc
Q 010005 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (520)
Q Consensus 72 l~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg 137 (520)
+.+.....+.++++|+||.+.. + +..-..+-++|.+.++ .+|+.++.+.+|
T Consensus 96 i~~~~~~~~~~~~~DlVvda~D------n--------~~aR~~ln~~c~~~~i-PlI~~g~~G~~G 146 (640)
T 1y8q_B 96 IMNPDYNVEFFRQFILVMNALD------N--------RAARNHVNRMCLAADV-PLIESGTAGYLG 146 (640)
T ss_dssp TTSTTSCHHHHTTCSEEEECCS------C--------HHHHHHHHHHHHHHTC-CEEEEEEETTEE
T ss_pred cchhhhhHhhhcCCCEEEECCC------C--------HHHHHHHHHHHHHcCC-CEEEEEEecccc
Confidence 7543323467889999997742 1 2333456778888886 578777665544
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=94.46 E-value=0.014 Score=58.76 Aligned_cols=76 Identities=20% Similarity=0.263 Sum_probs=50.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
+.++|+|+|+ |-+|+.+++.|...|. +|+++|+... |.. .+.+.. ...+ ..+..+.+.+.+.+.++|
T Consensus 166 ~~~~VlViGa-GgvG~~aa~~a~~~Ga-~V~v~dr~~~----r~~---~~~~~~-~~~~---~~~~~~~~~~~~~~~~~D 232 (361)
T 1pjc_A 166 KPGKVVILGG-GVVGTEAAKMAVGLGA-QVQIFDINVE----RLS---YLETLF-GSRV---ELLYSNSAEIETAVAEAD 232 (361)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCHH----HHH---HHHHHH-GGGS---EEEECCHHHHHHHHHTCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEeCCHH----HHH---HHHHhh-Ccee---EeeeCCHHHHHHHHcCCC
Confidence 3479999998 9999999999999996 9999665431 000 000000 0011 122235566778888999
Q ss_pred EEEEcccCC
Q 010005 87 TVFYVDATD 95 (520)
Q Consensus 87 ~Vih~aa~~ 95 (520)
+||++++..
T Consensus 233 vVI~~~~~~ 241 (361)
T 1pjc_A 233 LLIGAVLVP 241 (361)
T ss_dssp EEEECCCCT
T ss_pred EEEECCCcC
Confidence 999998763
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.52 Score=46.52 Aligned_cols=107 Identities=8% Similarity=0.043 Sum_probs=65.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--CCCCCCC--------C--CCCCcEEEE--ec
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--NSLLPDS--------L--SSGRAEYHQ--VD 71 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~--~~~l~~~--------~--~~~~v~~~~--~D 71 (520)
..+|+|.| .|-+|+++++.|...|..+++++|.+. ..++.|..- ....... + ..+.++... .+
T Consensus 34 ~~~VlIvG-aGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~~~~ 112 (340)
T 3rui_A 34 NTKVLLLG-AGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLS 112 (340)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEECCC
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEEecc
Confidence 57999998 788999999999999987899988765 112333310 0000000 0 023444433 33
Q ss_pred C--------------CCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEe
Q 010005 72 V--------------RDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130 (520)
Q Consensus 72 l--------------~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~ 130 (520)
+ .+.+.+.++++++|+||.+.. +++.- ..+-++|.+.++ .+|..
T Consensus 113 i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tD------n~~tR--------~lin~~c~~~~~-plI~a 170 (340)
T 3rui_A 113 IPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD------SRESR--------WLPSLLSNIENK-TVINA 170 (340)
T ss_dssp CCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCS------STGGG--------HHHHHHHHHTTC-EEEEE
T ss_pred ccccCcccchhhhhcCCHHHHHhhhccCCEEEecCC------CHHHH--------HHHHHHHHHcCC-cEEEe
Confidence 3 133456778889999998763 22221 235678888886 56654
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.019 Score=57.14 Aligned_cols=97 Identities=15% Similarity=0.156 Sum_probs=59.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHH---HHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS---QIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~---~l~~~l~ 83 (520)
.+++|||+||+|-+|..+++.+...|. +|++.|+.. .+..+...+ +... ..|..+.+ .+.+...
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~--------~~~~~~~~~---ga~~-~~d~~~~~~~~~~~~~~~ 232 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSE--------DKLRRAKAL---GADE-TVNYTHPDWPKEVRRLTG 232 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSH--------HHHHHHHHH---TCSE-EEETTSTTHHHHHHHHTT
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH--------HHHHHHHhc---CCCE-EEcCCcccHHHHHHHHhC
Confidence 468999999999999999999999994 899855432 210010111 1222 24666543 3444443
Q ss_pred --CCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecc
Q 010005 84 --GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (520)
Q Consensus 84 --~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~ 133 (520)
++|+||++++ ... ....++.++..| |+|.+++.
T Consensus 233 ~~~~d~vi~~~g-~~~--------------~~~~~~~l~~~G--~~v~~g~~ 267 (343)
T 2eih_A 233 GKGADKVVDHTG-ALY--------------FEGVIKATANGG--RIAIAGAS 267 (343)
T ss_dssp TTCEEEEEESSC-SSS--------------HHHHHHHEEEEE--EEEESSCC
T ss_pred CCCceEEEECCC-HHH--------------HHHHHHhhccCC--EEEEEecC
Confidence 6899999998 211 133445555444 78877654
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.19 Score=50.11 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=48.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecC-CCHHHHHHHHcCCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV-RDISQIKKVLEGAS 86 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl-~d~~~l~~~l~~~D 86 (520)
||||+|+| +|..|..++..+.+.| ++|+++|.++. .....+ --+++..|. .|.+.+....+++|
T Consensus 1 MK~I~ilG-gg~~g~~~~~~Ak~~G-~~vv~vd~~~~------~~~~~~-------aD~~~~~~~~~d~~~~~~~~~~~D 65 (363)
T 4ffl_A 1 MKTICLVG-GKLQGFEAAYLSKKAG-MKVVLVDKNPQ------ALIRNY-------ADEFYCFDVIKEPEKLLELSKRVD 65 (363)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESCTT------CTTTTT-------SSEEEECCTTTCHHHHHHHHTSSS
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEeCCCC------ChhHhh-------CCEEEECCCCcCHHHHHHHhcCCC
Confidence 58999998 6899999999999999 69998775431 110001 124555665 46777777778999
Q ss_pred EEEEc
Q 010005 87 TVFYV 91 (520)
Q Consensus 87 ~Vih~ 91 (520)
+|+-.
T Consensus 66 ~v~~~ 70 (363)
T 4ffl_A 66 AVLPV 70 (363)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 98744
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.022 Score=55.57 Aligned_cols=75 Identities=11% Similarity=0.121 Sum_probs=48.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
++++|+|+|+ |-+|+.++..|.+.|..+|+++|+ +.++ ..+.+.+.. ... +..+.+++.+.++++
T Consensus 140 ~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR--------~~~ka~~la~~~~~-~~~----~~~~~~~~~~~~~~a 205 (297)
T 2egg_A 140 DGKRILVIGA-GGGARGIYFSLLSTAAERIDMANR--------TVEKAERLVREGDE-RRS----AYFSLAEAETRLAEY 205 (297)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECS--------SHHHHHHHHHHSCS-SSC----CEECHHHHHHTGGGC
T ss_pred CCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeC--------CHHHHHHHHHHhhh-ccC----ceeeHHHHHhhhccC
Confidence 4689999996 779999999999999548999544 3321 011111110 000 112334567778899
Q ss_pred CEEEEcccCC
Q 010005 86 STVFYVDATD 95 (520)
Q Consensus 86 D~Vih~aa~~ 95 (520)
|+||++.+..
T Consensus 206 DivIn~t~~~ 215 (297)
T 2egg_A 206 DIIINTTSVG 215 (297)
T ss_dssp SEEEECSCTT
T ss_pred CEEEECCCCC
Confidence 9999998763
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.13 Score=44.22 Aligned_cols=84 Identities=11% Similarity=0.009 Sum_probs=52.6
Q ss_pred CCeEEEEcCC---ChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 8 PRTCVVLNGR---GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 8 ~~~ILVtGat---GfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
.++|.|.|++ |.+|..+++.|.+.| ++|+.+ .+... .. .++. +..++ .++-+.
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G-~~v~~V--------np~~~--~i------~G~~-~y~sl------~~l~~~ 77 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHG-YDVYPV--------NPKYE--EV------LGRK-CYPSV------LDIPDK 77 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEE--------CTTCS--EE------TTEE-CBSSG------GGCSSC
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCC-CEEEEE--------CCCCC--eE------CCee-ccCCH------HHcCCC
Confidence 5789999998 899999999999999 577663 22211 00 1222 11222 222236
Q ss_pred CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEe
Q 010005 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130 (520)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~ 130 (520)
+|.++-+.. -.....+++.|.+.|++.+++.
T Consensus 78 vDlvvi~vp---------------~~~~~~vv~~~~~~gi~~i~~~ 108 (144)
T 2d59_A 78 IEVVDLFVK---------------PKLTMEYVEQAIKKGAKVVWFQ 108 (144)
T ss_dssp CSEEEECSC---------------HHHHHHHHHHHHHHTCSEEEEC
T ss_pred CCEEEEEeC---------------HHHHHHHHHHHHHcCCCEEEEC
Confidence 888875542 1234567788888898876643
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.034 Score=57.42 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=29.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~ 43 (520)
|+|.|.| +|++|..++..|.+.|+ +|+++|+..
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G~-~V~~~d~~~ 33 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARGH-EVIGVDVSS 33 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-EEEEECSCH
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence 5899998 89999999999999995 999977654
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.014 Score=58.31 Aligned_cols=34 Identities=15% Similarity=0.179 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
.+.+|||+||+|-+|...++.+...|. +|++.|+
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~ 200 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAG 200 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeC
Confidence 467999999999999999999999994 8999554
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.034 Score=58.12 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=31.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhc--CCcEEEEecCCc
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLEL--GKCIVRVTDSTQ 43 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~--g~~~V~~~D~~~ 43 (520)
++++|+|.|.| .|++|..++..|.+. | ++|+++|+..
T Consensus 6 ~~~~mkI~VIG-~G~vG~~~A~~La~~g~g-~~V~~~D~~~ 44 (481)
T 2o3j_A 6 FGKVSKVVCVG-AGYVGGPTCAMIAHKCPH-ITVTVVDMNT 44 (481)
T ss_dssp SCCCCEEEEEC-CSTTHHHHHHHHHHHCTT-SEEEEECSCH
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHhcCCC-CEEEEEECCH
Confidence 34568999998 899999999999998 6 5999987654
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=94.10 E-value=0.071 Score=52.49 Aligned_cols=109 Identities=14% Similarity=0.050 Sum_probs=67.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCc--EEEEecCCcccccCCCCC--CCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKC--IVRVTDSTQSLQLDPSES--NSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~--~V~~~D~~~~~~l~r~~~--~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
|||.|+|+ |.+|+.++..|.+.| . +|+++|+.... +..... .... ... ....... .|.+ .+++
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g-~~~~V~l~D~~~~~-~~~~~~~l~~~~-~~~--~~~~i~~---~d~~----~~~~ 67 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKG-FAREMVLIDVDKKR-AEGDALDLIHGT-PFT--RRANIYA---GDYA----DLKG 67 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECSSHHH-HHHHHHHHHHHG-GGS--CCCEEEE---CCGG----GGTT
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CCCeEEEEeCChHH-HHHHHHHHHhhh-hhc--CCcEEEe---CCHH----HhCC
Confidence 58999997 999999999999998 5 79997765321 000000 0000 000 1122222 2322 4679
Q ss_pred CCEEEEcccCCC-CCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEe
Q 010005 85 ASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYN 130 (520)
Q Consensus 85 ~D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~ 130 (520)
+|+||-+++... ...........|+.....+++.+.+.... .+|.+
T Consensus 68 aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~ 115 (319)
T 1a5z_A 68 SDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVV 115 (319)
T ss_dssp CSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe
Confidence 999999987632 22335566778888889999988876433 34444
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=94.08 E-value=0.048 Score=53.40 Aligned_cols=105 Identities=16% Similarity=0.107 Sum_probs=63.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCC--CCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~--~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
|+|.|+| +|.+|+.++..|.+.|. ++|+++|+.... +..-. ..+.. ......+.....| . +.++++
T Consensus 2 ~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~~~-~~~~~--~~l~~~~~~~~~~~~~~~~d---~----~~~~~a 70 (309)
T 1hyh_A 2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAK-VKADQ--IDFQDAMANLEAHGNIVIND---W----AALADA 70 (309)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHH-HHHHH--HHHHHHGGGSSSCCEEEESC---G----GGGTTC
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCHHH-HHHHH--HHHHhhhhhcCCCeEEEeCC---H----HHhCCC
Confidence 7999999 89999999999999982 389997765321 00000 00000 0001123332233 2 346789
Q ss_pred CEEEEcccCCC-----CCcchhhHHhhhHHHHHHHHHHHHHCCC
Q 010005 86 STVFYVDATDL-----NTDDFYNCYMIIVQGAKNVVTACRECKV 124 (520)
Q Consensus 86 D~Vih~aa~~~-----~~~~~~~~~~~Nv~gt~~ll~aa~~~gv 124 (520)
|+||-+++... ...........|+.....+++.+.+...
T Consensus 71 DvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~ 114 (309)
T 1hyh_A 71 DVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGF 114 (309)
T ss_dssp SEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999887522 2233345567788888888888887653
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.033 Score=55.26 Aligned_cols=74 Identities=12% Similarity=0.045 Sum_probs=47.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHH---HHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS---QIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~---~l~~~l~ 83 (520)
.+.+|||+||+|-+|...++.+...|. +|+++|.. +.+..+...+ +... ..|..+.+ .+.+...
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~--------~~~~~~~~~l---ga~~-~~~~~~~~~~~~~~~~~~ 210 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRN--------NKHTEELLRL---GAAY-VIDTSTAPLYETVMELTN 210 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESS--------STTHHHHHHH---TCSE-EEETTTSCHHHHHHHHTT
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCC--------HHHHHHHHhC---CCcE-EEeCCcccHHHHHHHHhC
Confidence 467999999999999999999999995 99995543 2211111111 1222 23554433 3333333
Q ss_pred --CCCEEEEccc
Q 010005 84 --GASTVFYVDA 93 (520)
Q Consensus 84 --~~D~Vih~aa 93 (520)
++|+||++++
T Consensus 211 ~~g~Dvvid~~g 222 (340)
T 3gms_A 211 GIGADAAIDSIG 222 (340)
T ss_dssp TSCEEEEEESSC
T ss_pred CCCCcEEEECCC
Confidence 6899999987
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.94 E-value=0.044 Score=53.74 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=30.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCC
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~ 42 (520)
..++|+|.|.| .|.+|..+++.|.+.| ++|++.|+.
T Consensus 18 ~~~m~~I~iIG-~G~mG~~~A~~l~~~G-~~V~~~dr~ 53 (310)
T 3doj_A 18 GSHMMEVGFLG-LGIMGKAMSMNLLKNG-FKVTVWNRT 53 (310)
T ss_dssp CCCSCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSS
T ss_pred cccCCEEEEEC-ccHHHHHHHHHHHHCC-CeEEEEeCC
Confidence 34568999997 8999999999999999 499996554
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=93.86 E-value=0.022 Score=56.18 Aligned_cols=75 Identities=15% Similarity=0.076 Sum_probs=47.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHH---HHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS---QIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~---~l~~~l~ 83 (520)
++.+|||+||+|-+|...++.+...|. +|++.|... .+..+...+ +.. ...|..+.+ .+.+...
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~--------~~~~~~~~~---Ga~-~~~~~~~~~~~~~~~~~~~ 206 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSP--------EKAAHAKAL---GAW-ETIDYSHEDVAKRVLELTD 206 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSH--------HHHHHHHHH---TCS-EEEETTTSCHHHHHHHHTT
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCH--------HHHHHHHHc---CCC-EEEeCCCccHHHHHHHHhC
Confidence 468999999999999999999999994 999855432 211111111 111 123444433 3344433
Q ss_pred --CCCEEEEcccC
Q 010005 84 --GASTVFYVDAT 94 (520)
Q Consensus 84 --~~D~Vih~aa~ 94 (520)
++|+||++++.
T Consensus 207 ~~g~Dvvid~~g~ 219 (325)
T 3jyn_A 207 GKKCPVVYDGVGQ 219 (325)
T ss_dssp TCCEEEEEESSCG
T ss_pred CCCceEEEECCCh
Confidence 58999999873
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.038 Score=57.20 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=30.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~ 43 (520)
+|+|.|.| +|++|..++..|.+.| ++|+++|+..
T Consensus 2 ~mkI~VIG-~G~vG~~lA~~La~~G-~~V~~~D~~~ 35 (450)
T 3gg2_A 2 SLDIAVVG-IGYVGLVSATCFAELG-ANVRCIDTDR 35 (450)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSCH
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhcC-CEEEEEECCH
Confidence 37999998 7999999999999999 4999987754
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=93.80 E-value=0.029 Score=55.58 Aligned_cols=75 Identities=19% Similarity=0.128 Sum_probs=47.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCH---HHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI---SQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~---~~l~~~l~ 83 (520)
++.+|||+||+|-+|...++.+...|. +|++.|+.. .+..+...+ +.. ...|..+. +.+.+...
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~--------~~~~~~~~~---ga~-~~~~~~~~~~~~~~~~~~~ 214 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTD--------EKLKIAKEY---GAE-YLINASKEDILRQVLKFTN 214 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSH--------HHHHHHHHT---TCS-EEEETTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH--------HHHHHHHHc---CCc-EEEeCCCchHHHHHHHHhC
Confidence 468999999999999999999999994 899965432 211111111 111 12344443 33444432
Q ss_pred --CCCEEEEcccC
Q 010005 84 --GASTVFYVDAT 94 (520)
Q Consensus 84 --~~D~Vih~aa~ 94 (520)
++|+||++++.
T Consensus 215 ~~g~D~vid~~g~ 227 (334)
T 3qwb_A 215 GKGVDASFDSVGK 227 (334)
T ss_dssp TSCEEEEEECCGG
T ss_pred CCCceEEEECCCh
Confidence 58999999973
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.0044 Score=53.46 Aligned_cols=70 Identities=9% Similarity=0.183 Sum_probs=45.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
.++|+|+|+ |.+|+.+++.|.+.|+ +|++.|+.. .+. .+.+.+ +.... +. +++.+.++++|
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~-~v~v~~r~~--------~~~~~~a~~~---~~~~~--~~---~~~~~~~~~~D 82 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQY-KVTVAGRNI--------DHVRAFAEKY---EYEYV--LI---NDIDSLIKNND 82 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTC-EEEEEESCH--------HHHHHHHHHH---TCEEE--EC---SCHHHHHHTCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEcCCH--------HHHHHHHHHh---CCceE--ee---cCHHHHhcCCC
Confidence 689999995 9999999999999995 688865432 210 011111 12221 22 23456778999
Q ss_pred EEEEcccCC
Q 010005 87 TVFYVDATD 95 (520)
Q Consensus 87 ~Vih~aa~~ 95 (520)
+||.+.+..
T Consensus 83 ivi~at~~~ 91 (144)
T 3oj0_A 83 VIITATSSK 91 (144)
T ss_dssp EEEECSCCS
T ss_pred EEEEeCCCC
Confidence 999988653
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=93.77 E-value=0.028 Score=56.01 Aligned_cols=75 Identities=16% Similarity=0.218 Sum_probs=48.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhc-CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHH---HHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS---QIKKVL 82 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~-g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~---~l~~~l 82 (520)
.+++|||+||+|-+|..+++.+... | .+|++.|+.. .+..+...+ +.. ...|..+.+ ++.++.
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~G-a~Vi~~~~~~--------~~~~~~~~~---g~~-~~~~~~~~~~~~~~~~~~ 236 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVRE--------EAVEAAKRA---GAD-YVINASMQDPLAEIRRIT 236 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSH--------HHHHHHHHH---TCS-EEEETTTSCHHHHHHHHT
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCC-CeEEEEcCCH--------HHHHHHHHh---CCC-EEecCCCccHHHHHHHHh
Confidence 4679999999999999999999999 9 4899865432 110010111 111 223555533 345554
Q ss_pred c--CCCEEEEcccC
Q 010005 83 E--GASTVFYVDAT 94 (520)
Q Consensus 83 ~--~~D~Vih~aa~ 94 (520)
. ++|+||++++.
T Consensus 237 ~~~~~d~vi~~~g~ 250 (347)
T 1jvb_A 237 ESKGVDAVIDLNNS 250 (347)
T ss_dssp TTSCEEEEEESCCC
T ss_pred cCCCceEEEECCCC
Confidence 3 68999999974
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.037 Score=55.93 Aligned_cols=76 Identities=18% Similarity=0.185 Sum_probs=51.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
.+++|+|+|+ |-+|+.+++.+...|. +|+++|+.... .. ...+.+ ...+ ..+..+.+.+.+.++++|
T Consensus 167 ~g~~V~ViG~-G~iG~~~a~~a~~~Ga-~V~~~d~~~~~----l~---~~~~~~-g~~~---~~~~~~~~~l~~~l~~aD 233 (377)
T 2vhw_A 167 EPADVVVIGA-GTAGYNAARIANGMGA-TVTVLDINIDK----LR---QLDAEF-CGRI---HTRYSSAYELEGAVKRAD 233 (377)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCHHH----HH---HHHHHT-TTSS---EEEECCHHHHHHHHHHCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEeCCHHH----HH---HHHHhc-CCee---EeccCCHHHHHHHHcCCC
Confidence 4689999997 9999999999999995 99997754310 00 000001 0111 234445667888888999
Q ss_pred EEEEcccCC
Q 010005 87 TVFYVDATD 95 (520)
Q Consensus 87 ~Vih~aa~~ 95 (520)
+||.+++..
T Consensus 234 vVi~~~~~p 242 (377)
T 2vhw_A 234 LVIGAVLVP 242 (377)
T ss_dssp EEEECCCCT
T ss_pred EEEECCCcC
Confidence 999988753
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=93.75 E-value=0.31 Score=47.10 Aligned_cols=89 Identities=10% Similarity=0.105 Sum_probs=57.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEE-EecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVR-VTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~-~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
+.+||+|.|++|-.|+.+++.+.+.| ++++ . +.+..... + ..+++. . .++.++.+
T Consensus 6 ~~~~VaVvGasG~~G~~~~~~l~~~g-~~~v~~--------VnP~~~g~---~---i~G~~v-y------~sl~el~~~~ 63 (288)
T 1oi7_A 6 RETRVLVQGITGREGQFHTKQMLTYG-TKIVAG--------VTPGKGGM---E---VLGVPV-Y------DTVKEAVAHH 63 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHT-CEEEEE--------ECTTCTTC---E---ETTEEE-E------SSHHHHHHHS
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHcC-CeEEEE--------ECCCCCCc---e---ECCEEe-e------CCHHHHhhcC
Confidence 46899999999999999999999999 5644 4 23322100 0 012222 1 22445555
Q ss_pred CCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeec
Q 010005 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (520)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS 132 (520)
++|++|-+.. -..+..+++.|.+.|++.+|.+++
T Consensus 64 ~~Dv~Ii~vp---------------~~~~~~~~~ea~~~Gi~~vVi~t~ 97 (288)
T 1oi7_A 64 EVDASIIFVP---------------APAAADAALEAAHAGIPLIVLITE 97 (288)
T ss_dssp CCSEEEECCC---------------HHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCEEEEecC---------------HHHHHHHHHHHHHCCCCEEEEECC
Confidence 8999997653 233456888899999976665553
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=93.75 E-value=0.089 Score=55.87 Aligned_cols=107 Identities=8% Similarity=0.045 Sum_probs=65.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--CCCCCCC--------C--CCCCcEE--EEec
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--NSLLPDS--------L--SSGRAEY--HQVD 71 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~--~~~l~~~--------~--~~~~v~~--~~~D 71 (520)
..+|+|.| .|-+|+++++.|...|..+++++|.+. ..++.|..- ....... + ..+.++. +..+
T Consensus 326 ~arVLIVG-aGGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~V~v~~~~~~ 404 (615)
T 4gsl_A 326 NTKVLLLG-AGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLS 404 (615)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEECCC
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCCcEEEEeecc
Confidence 57999998 788999999999999987899998865 112333310 0000000 0 0233443 3333
Q ss_pred C--------------CCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEe
Q 010005 72 V--------------RDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130 (520)
Q Consensus 72 l--------------~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~ 130 (520)
+ .+.+.+.++++++|+||.+.. +++.- ..+-++|.+.++ .+|..
T Consensus 405 Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tD------n~~tR--------~~ln~~c~~~~~-PlI~a 462 (615)
T 4gsl_A 405 IPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD------SRESR--------WLPSLLSNIENK-TVINA 462 (615)
T ss_dssp CCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCS------SGGGT--------HHHHHHHHHTTC-EEEEE
T ss_pred ccccCccccchhhhcCCHHHHHHHhhcCCEEEecCC------CHHHH--------HHHHHHHHHcCC-eEEEE
Confidence 3 133456778889999998863 22221 246678888886 56654
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.23 Score=49.18 Aligned_cols=31 Identities=13% Similarity=0.060 Sum_probs=25.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhc--CCcEEEEe
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLEL--GKCIVRVT 39 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~--g~~~V~~~ 39 (520)
++||.|.|+ |.||+.+++.|.++ +..+|+++
T Consensus 2 ~ikVgI~G~-G~IGr~v~r~l~~~~~~~~evvaI 34 (339)
T 3b1j_A 2 TIRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAI 34 (339)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSCCSEEEEEE
T ss_pred ceEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEE
Confidence 369999999 99999999999987 54566554
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.82 Score=44.30 Aligned_cols=35 Identities=26% Similarity=0.309 Sum_probs=28.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~ 43 (520)
|.+||-++| .|..|..+++.|++.| ++|++.|+..
T Consensus 4 Ms~kIgfIG-LG~MG~~mA~~L~~~G-~~V~v~dr~~ 38 (297)
T 4gbj_A 4 MSEKIAFLG-LGNLGTPIAEILLEAG-YELVVWNRTA 38 (297)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHHTT-CEEEEC----
T ss_pred CCCcEEEEe-cHHHHHHHHHHHHHCC-CeEEEEeCCH
Confidence 456899997 8999999999999999 5999977654
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.08 Score=51.08 Aligned_cols=35 Identities=14% Similarity=0.288 Sum_probs=30.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~ 42 (520)
++|+|.|+|++|.+|+.+++.|.+.| ++|+++|+.
T Consensus 10 mmm~I~iIG~tG~mG~~la~~l~~~g-~~V~~~~r~ 44 (286)
T 3c24_A 10 GPKTVAILGAGGKMGARITRKIHDSA-HHLAAIEIA 44 (286)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHSS-SEEEEECCS
T ss_pred cCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEECC
Confidence 35799999999999999999999999 499995543
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=93.67 E-value=0.07 Score=51.40 Aligned_cols=70 Identities=11% Similarity=0.135 Sum_probs=46.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
++++|+|+|+ |-+|+.++..|.+.|..+|+++ .|+.++. +.+. ..+.. ...+++.+.++++|
T Consensus 116 ~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~--------~R~~~~a---~~la-~~~~~-----~~~~~~~~~~~~aD 177 (277)
T 3don_A 116 EDAYILILGA-GGASKGIANELYKIVRPTLTVA--------NRTMSRF---NNWS-LNINK-----INLSHAESHLDEFD 177 (277)
T ss_dssp GGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEE--------CSCGGGG---TTCC-SCCEE-----ECHHHHHHTGGGCS
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEE--------eCCHHHH---HHHH-Hhccc-----ccHhhHHHHhcCCC
Confidence 4689999996 8899999999999995478884 4443321 1111 11221 13455667788899
Q ss_pred EEEEcccC
Q 010005 87 TVFYVDAT 94 (520)
Q Consensus 87 ~Vih~aa~ 94 (520)
+||++...
T Consensus 178 iVInaTp~ 185 (277)
T 3don_A 178 IIINTTPA 185 (277)
T ss_dssp EEEECCC-
T ss_pred EEEECccC
Confidence 99998754
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.067 Score=53.71 Aligned_cols=75 Identities=15% Similarity=0.046 Sum_probs=50.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
.+.+|||+|+ |-||...++.+...|. +|+++|.. +.+..... ..-+... ..|..+.+.+.++..++|
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga-~Vi~~~~~--------~~~~~~~~--~~lGa~~-v~~~~~~~~~~~~~~~~D 253 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFGS-KVTVISTS--------PSKKEEAL--KNFGADS-FLVSRDQEQMQAAAGTLD 253 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESC--------GGGHHHHH--HTSCCSE-EEETTCHHHHHHTTTCEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCC--------HHHHHHHH--HhcCCce-EEeccCHHHHHHhhCCCC
Confidence 4679999996 9999999999999994 89885543 22110100 0112222 346777777777667899
Q ss_pred EEEEcccC
Q 010005 87 TVFYVDAT 94 (520)
Q Consensus 87 ~Vih~aa~ 94 (520)
+||++++.
T Consensus 254 ~vid~~g~ 261 (366)
T 1yqd_A 254 GIIDTVSA 261 (366)
T ss_dssp EEEECCSS
T ss_pred EEEECCCc
Confidence 99999875
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=93.64 E-value=0.041 Score=54.71 Aligned_cols=76 Identities=14% Similarity=0.155 Sum_probs=47.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCH-HHHHHHHc--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI-SQIKKVLE-- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~-~~l~~~l~-- 83 (520)
.+.+|||+||+|-+|...++.+...|. +|++++... .+..+...+ .-...+..+ .+. +.+.+...
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~--------~~~~~~~~~--ga~~v~~~~-~~~~~~v~~~~~~~ 226 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRT--------AATEFVKSV--GADIVLPLE-EGWAKAVREATGGA 226 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSG--------GGHHHHHHH--TCSEEEESS-TTHHHHHHHHTTTS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH--------HHHHHHHhc--CCcEEecCc-hhHHHHHHHHhCCC
Confidence 467999999999999999999999994 999855432 211111111 111223223 222 23444443
Q ss_pred CCCEEEEcccC
Q 010005 84 GASTVFYVDAT 94 (520)
Q Consensus 84 ~~D~Vih~aa~ 94 (520)
++|+||++++.
T Consensus 227 g~Dvvid~~g~ 237 (342)
T 4eye_A 227 GVDMVVDPIGG 237 (342)
T ss_dssp CEEEEEESCC-
T ss_pred CceEEEECCch
Confidence 59999999984
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=93.63 E-value=0.11 Score=55.25 Aligned_cols=106 Identities=8% Similarity=0.053 Sum_probs=64.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--CCCCCCC--------CC--CCCcEE--EEec
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--NSLLPDS--------LS--SGRAEY--HQVD 71 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~--~~~l~~~--------~~--~~~v~~--~~~D 71 (520)
..+|+|.| .|-+|+++++.|...|..+++++|.+. ..++.|+.- ....... +. .+.++. +..+
T Consensus 327 ~~kVLIVG-aGGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~v~v~~~~~~ 405 (598)
T 3vh1_A 327 NTKVLLLG-AGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLS 405 (598)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTTCEEEEECCC
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCCcEEEEEecc
Confidence 57999998 788999999999999987899998764 112333320 0000000 00 234443 3333
Q ss_pred C--------------CCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEE
Q 010005 72 V--------------RDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129 (520)
Q Consensus 72 l--------------~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~ 129 (520)
+ .+.+.+.++++++|+||.+.. +++.- ..+-++|.+.++ .+|.
T Consensus 406 I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatD------n~~tR--------~lin~~c~~~~~-plI~ 462 (598)
T 3vh1_A 406 IPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD------SRESR--------WLPSLLSNIENK-TVIN 462 (598)
T ss_dssp CCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCS------BGGGT--------HHHHHHHHHTTC-EEEE
T ss_pred ccccCcccccccccccCHHHHHHHHhcCCEEEECCC------CHHHH--------HHHHHHHHhcCC-CEEE
Confidence 2 134566788889999998753 22221 235678888876 4554
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.24 Score=48.90 Aligned_cols=108 Identities=10% Similarity=0.072 Sum_probs=57.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCccccc-----CCCCCCCCCCCCCC--CCCc-----EEEEecCCCHH
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQL-----DPSESNSLLPDSLS--SGRA-----EYHQVDVRDIS 76 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l-----~r~~~~~~l~~~~~--~~~v-----~~~~~Dl~d~~ 76 (520)
+||.|.| .|++|+.+++.|.+.+..+|+++.-...... ..+...+.+..... ...+ ........|++
T Consensus 2 ikVgI~G-~G~iG~~l~R~l~~~~~veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp~ 80 (330)
T 1gad_O 2 IKVGING-FGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPA 80 (330)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred eEEEEEC-cCHHHHHHHHHHHcCCCeEEEEEcCCCChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEEEEEcCChh
Confidence 5899999 5999999999999876556665432110000 01111111211100 0001 11123334565
Q ss_pred HHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecc
Q 010005 77 QIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (520)
Q Consensus 77 ~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~ 133 (520)
++.-...++|+||-+.+...+ ...+....+.|+|+++ +|+.
T Consensus 81 ~i~w~~~~vDvVf~atg~~~s---------------~e~a~~~l~~GakvVd-lSa~ 121 (330)
T 1gad_O 81 NLKWDEVGVDVVAEATGLFLT---------------DETARKHITAGAKKVV-MTGP 121 (330)
T ss_dssp GGCHHHHTCSEEEECSSSCCS---------------HHHHTHHHHTTCSEEE-ESSC
T ss_pred hCccccccCCEEEECCCcccc---------------HHHHHHHHHCCCEEEE-ECCC
Confidence 543334589999998876433 2244455667987655 4544
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.065 Score=55.07 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=32.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~ 43 (520)
..|.+|.|.| .||+|-.++..|.+.|| +|+++|++.
T Consensus 19 ~~m~~IaViG-lGYVGLp~A~~~A~~G~-~V~g~Did~ 54 (444)
T 3vtf_A 19 SHMASLSVLG-LGYVGVVHAVGFALLGH-RVVGYDVNP 54 (444)
T ss_dssp CCCCEEEEEC-CSHHHHHHHHHHHHHTC-EEEEECSCH
T ss_pred CCCCEEEEEc-cCHHHHHHHHHHHhCCC-cEEEEECCH
Confidence 3567999997 99999999999999994 999999875
|
| >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.15 Score=52.20 Aligned_cols=71 Identities=14% Similarity=0.173 Sum_probs=51.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--C
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~ 84 (520)
++|+|||+|+ |.+|..+++.+.+.| ++|+++|.... .+. . . .-.+.+..|..|.+.+.++++ +
T Consensus 18 ~~~~ili~g~-g~~g~~~~~a~~~~G-~~v~~v~~~~~-----~~~---~-~----~ad~~~~~~~~d~~~l~~~~~~~~ 82 (433)
T 2dwc_A 18 SAQKILLLGS-GELGKEIAIEAQRLG-VEVVAVDRYAN-----APA---M-Q----VAHRSYVGNMMDKDFLWSVVEREK 82 (433)
T ss_dssp TCCEEEEESC-SHHHHHHHHHHHHTT-CEEEEEESSTT-----CHH---H-H----HSSEEEESCTTCHHHHHHHHHHHC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEECCCC-----Chh---h-h----hcceEEECCCCCHHHHHHHHHHcC
Confidence 4579999986 899999999999999 58888765421 000 0 0 012456788889988888875 7
Q ss_pred CCEEEEcc
Q 010005 85 ASTVFYVD 92 (520)
Q Consensus 85 ~D~Vih~a 92 (520)
+|+|+...
T Consensus 83 ~d~V~~~~ 90 (433)
T 2dwc_A 83 PDAIIPEI 90 (433)
T ss_dssp CSEEEECS
T ss_pred CCEEEECc
Confidence 99998643
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=93.46 E-value=0.24 Score=48.45 Aligned_cols=81 Identities=21% Similarity=0.247 Sum_probs=53.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
-.+++++|.|++..+|+.+++.|++.| .+|+++|+.......|... + .............+++++.+.+.++
T Consensus 175 l~gk~vvVIG~G~iVG~~~A~~L~~~g-AtVtv~nR~~~~l~~ra~~---l----a~~~~~~t~~~~t~~~~L~e~l~~A 246 (320)
T 1edz_A 175 LYGKKCIVINRSEIVGRPLAALLANDG-ATVYSVDVNNIQKFTRGES---L----KLNKHHVEDLGEYSEDLLKKCSLDS 246 (320)
T ss_dssp TTTCEEEEECCCTTTHHHHHHHHHTTS-CEEEEECSSEEEEEESCCC---S----SCCCCEEEEEEECCHHHHHHHHHHC
T ss_pred CCCCEEEEECCCcchHHHHHHHHHHCC-CEEEEEeCchHHHHhHHHH---H----hhhcccccccccccHhHHHHHhccC
Confidence 457899999988899999999999999 5899976653221222221 1 1111111111113456789999999
Q ss_pred CEEEEcccC
Q 010005 86 STVFYVDAT 94 (520)
Q Consensus 86 D~Vih~aa~ 94 (520)
|+||-..+.
T Consensus 247 DIVIsAtg~ 255 (320)
T 1edz_A 247 DVVITGVPS 255 (320)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999988775
|
| >1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O* | Back alignment and structure |
|---|
Probab=93.23 E-value=0.38 Score=47.53 Aligned_cols=29 Identities=17% Similarity=0.061 Sum_probs=24.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhc--CCcEEEE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLEL--GKCIVRV 38 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~--g~~~V~~ 38 (520)
+||.|.|+ |.||+.+++.|.++ +..+|++
T Consensus 2 ikVgInG~-G~IGr~llR~l~~~~~p~~eiva 32 (337)
T 1rm4_O 2 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVV 32 (337)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTCSSCSEEEEE
T ss_pred eEEEEECC-CHHHHHHHHHHHhCCCCCeEEEE
Confidence 58999999 99999999999987 4345554
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=93.18 E-value=0.086 Score=52.50 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=26.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEec
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD 40 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D 40 (520)
+++||.|.|+ |+||+.+++.|.+++..+|+++.
T Consensus 16 ~~ikVgI~G~-G~iGr~llR~l~~~p~veivain 48 (354)
T 3cps_A 16 FQGTLGINGF-GRIGRLVLRACMERNDITVVAIN 48 (354)
T ss_dssp --CEEEEECC-SHHHHHHHHHHHTCSSCEEEEEE
T ss_pred cceEEEEECC-CHHHHHHHHHHHcCCCeEEEEec
Confidence 4579999999 99999999999987545766543
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=93.12 E-value=0.23 Score=48.60 Aligned_cols=82 Identities=11% Similarity=0.070 Sum_probs=49.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCC-CCCcEEEEecCCCHHHHHHHHcC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLS-SGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~-~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
.+++++|+|+ |-.|+.++..|.+.|..+|+++++... + ..+ ..+.+.+. ..+......++.|.+.+.+.+.+
T Consensus 147 ~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~----~-~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~ 220 (312)
T 3t4e_A 147 RGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDD----F-FEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALAS 220 (312)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSST----H-HHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHH
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCc----h-HHHHHHHHHHhhhccCcceEEechHhhhhhHhhccC
Confidence 4689999996 889999999999999557988443310 0 110 00000000 01223344556565445566677
Q ss_pred CCEEEEcccC
Q 010005 85 ASTVFYVDAT 94 (520)
Q Consensus 85 ~D~Vih~aa~ 94 (520)
+|+||++...
T Consensus 221 ~DiIINaTp~ 230 (312)
T 3t4e_A 221 ADILTNGTKV 230 (312)
T ss_dssp CSEEEECSST
T ss_pred ceEEEECCcC
Confidence 8888887654
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=93.12 E-value=0.052 Score=54.05 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=28.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEec
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD 40 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D 40 (520)
|.||.|.||||++|+.+++.|.+....+++.+.
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~ 45 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLS 45 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred eeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEe
Confidence 568999999999999999999998766777743
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=93.07 E-value=0.086 Score=52.39 Aligned_cols=29 Identities=10% Similarity=0.082 Sum_probs=24.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRV 38 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~ 38 (520)
+||.|.|+ |.+|+.+++.|.+....+|++
T Consensus 2 ikVgIiGa-G~iG~~~~r~L~~~p~~elva 30 (340)
T 1b7g_O 2 VNVAVNGY-GTIGKRVADAIIKQPDMKLVG 30 (340)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTCTTEEEEE
T ss_pred eEEEEEec-CHHHHHHHHHHHcCCCCEEEE
Confidence 58999999 999999999999876456554
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=0.37 Score=46.59 Aligned_cols=89 Identities=8% Similarity=0.082 Sum_probs=56.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEE-EecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVR-VTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~-~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
+.+||+|.|++|.+|+.+++.|.+.| ++++ .+ .+..... + ..++.. . .++.++.+
T Consensus 6 ~~~rVaViG~sG~~G~~~~~~l~~~g-~~~V~~V--------~p~~~g~---~---~~G~~v-y------~sl~el~~~~ 63 (288)
T 2nu8_A 6 KNTKVICQGFTGSQGTFHSEQAIAYG-TKMVGGV--------TPGKGGT---T---HLGLPV-F------NTVREAVAAT 63 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEE--------CTTCTTC---E---ETTEEE-E------SSHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEe--------CCCcccc---e---eCCeec-c------CCHHHHhhcC
Confidence 46899999999999999999999988 5644 42 2221100 0 012222 1 22445555
Q ss_pred CCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeec
Q 010005 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (520)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS 132 (520)
++|+++-+... .....+++.|.+.|++.+|-+++
T Consensus 64 ~~D~viI~tP~---------------~~~~~~~~ea~~~Gi~~iVi~t~ 97 (288)
T 2nu8_A 64 GATASVIYVPA---------------PFCKDSILEAIDAGIKLIITITE 97 (288)
T ss_dssp CCCEEEECCCG---------------GGHHHHHHHHHHTTCSEEEECCC
T ss_pred CCCEEEEecCH---------------HHHHHHHHHHHHCCCCEEEEECC
Confidence 89999977642 12345788888899876565443
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=93.05 E-value=0.037 Score=55.13 Aligned_cols=33 Identities=27% Similarity=0.237 Sum_probs=28.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~ 42 (520)
+|+|.|.| .|.+|+.++..|.+.|+ +|+++|+.
T Consensus 4 ~mki~iiG-~G~~G~~~a~~L~~~g~-~V~~~~r~ 36 (359)
T 1bg6_A 4 SKTYAVLG-LGNGGHAFAAYLALKGQ-SVLAWDID 36 (359)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred cCeEEEEC-CCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence 57999998 59999999999999994 89996553
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=93.04 E-value=0.077 Score=54.76 Aligned_cols=33 Identities=12% Similarity=0.038 Sum_probs=29.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEec
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD 40 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D 40 (520)
.+.+|||+||+|-||...++.+...| .+|++++
T Consensus 220 ~g~~VlV~GasG~iG~~a~qla~~~G-a~vi~~~ 252 (447)
T 4a0s_A 220 QGDIVLIWGASGGLGSYAIQFVKNGG-GIPVAVV 252 (447)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEe
Confidence 46899999999999999999999999 4888744
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A | Back alignment and structure |
|---|
Probab=93.02 E-value=0.45 Score=47.67 Aligned_cols=109 Identities=8% Similarity=0.005 Sum_probs=57.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhc--CCcEEEEe-cCCccc---ccC-CCCCCCCCCCCCC--CC-----CcEEEEecCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLEL--GKCIVRVT-DSTQSL---QLD-PSESNSLLPDSLS--SG-----RAEYHQVDVR 73 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~--g~~~V~~~-D~~~~~---~l~-r~~~~~~l~~~~~--~~-----~v~~~~~Dl~ 73 (520)
++||.|.|+ |.||+.+++.|.++ +..+|+++ |+.... .+. .+...+.+..... .. +-.......+
T Consensus 2 ~ikVgInGf-GrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~ 80 (380)
T 2d2i_A 2 TIRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDR 80 (380)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCS
T ss_pred CcEEEEECc-CHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEEEeCCeEEECCeEEEEEecC
Confidence 369999999 99999999999987 43466554 321000 000 0011111111100 01 1122222345
Q ss_pred CHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeec
Q 010005 74 DISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (520)
Q Consensus 74 d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS 132 (520)
|++++.---.++|+||-+++.... ...+....+.|+||+|..-+
T Consensus 81 dp~~l~w~~~gvDvV~e~TG~f~s---------------~e~a~~hl~aGakkVVIs~p 124 (380)
T 2d2i_A 81 NPLNLPWKEWDIDLVIESTGVFVT---------------AEGASKHIQAGAKKVLITAP 124 (380)
T ss_dssp CGGGCCHHHHTCCEEEECSSSCCB---------------HHHHHHHHHTTCSEEEESSC
T ss_pred ChHHCCcccCCCCEEEECCCcccc---------------HHHHHHHHHcCCcEEEEcCC
Confidence 555432111279999999986432 22445566779988765544
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=92.97 E-value=0.31 Score=47.75 Aligned_cols=66 Identities=11% Similarity=0.115 Sum_probs=47.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
..+|+|.|.| .|-||+.+++.|...| .+|++.|+. +.. ..++.... ..+++.++++++
T Consensus 137 l~g~tvGIiG-~G~IG~~vA~~l~~~G-~~V~~~dr~--------~~~--------~~~~~~~~----~~~~l~ell~~a 194 (315)
T 3pp8_A 137 REEFSVGIMG-AGVLGAKVAESLQAWG-FPLRCWSRS--------RKS--------WPGVESYV----GREELRAFLNQT 194 (315)
T ss_dssp STTCCEEEEC-CSHHHHHHHHHHHTTT-CCEEEEESS--------CCC--------CTTCEEEE----SHHHHHHHHHTC
T ss_pred cCCCEEEEEe-eCHHHHHHHHHHHHCC-CEEEEEcCC--------chh--------hhhhhhhc----ccCCHHHHHhhC
Confidence 4578999998 8999999999999999 599996543 221 01222222 135788999999
Q ss_pred CEEEEccc
Q 010005 86 STVFYVDA 93 (520)
Q Consensus 86 D~Vih~aa 93 (520)
|+|+-+..
T Consensus 195 DiV~l~~P 202 (315)
T 3pp8_A 195 RVLINLLP 202 (315)
T ss_dssp SEEEECCC
T ss_pred CEEEEecC
Confidence 99987664
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=92.94 E-value=0.41 Score=47.37 Aligned_cols=31 Identities=23% Similarity=0.224 Sum_probs=25.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHh---cCCcEEEEe
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLE---LGKCIVRVT 39 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~---~g~~~V~~~ 39 (520)
++||.|.|+ |+||+.+++.|.+ ++..+|+++
T Consensus 2 ~ikVgI~G~-G~iGr~l~r~l~~~~~~~~~eivai 35 (339)
T 2x5j_O 2 TVRVAINGF-GRIGRNVVRALYESGRRAEITVVAI 35 (339)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHTSGGGTEEEEEE
T ss_pred CeEEEEECc-CHHHHHHHHHHHcCCCCCCEEEEEE
Confidence 369999998 9999999999998 643566654
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=92.90 E-value=0.26 Score=47.31 Aligned_cols=56 Identities=18% Similarity=0.267 Sum_probs=45.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
..+++++|+|++|.+|+.++..|+++|. +|++.+ +.. ..+.+.++.+
T Consensus 158 l~Gk~vvVvGrs~iVG~p~A~lL~~~gA-tVtv~h--------~~t------------------------~~L~~~~~~A 204 (285)
T 3p2o_A 158 LEGKDAVIIGASNIVGRPMATMLLNAGA-TVSVCH--------IKT------------------------KDLSLYTRQA 204 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEEC--------TTC------------------------SCHHHHHTTC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEe--------CCc------------------------hhHHHHhhcC
Confidence 4679999999999999999999999994 888832 211 1356788899
Q ss_pred CEEEEcccC
Q 010005 86 STVFYVDAT 94 (520)
Q Consensus 86 D~Vih~aa~ 94 (520)
|+||...+.
T Consensus 205 DIVI~Avg~ 213 (285)
T 3p2o_A 205 DLIIVAAGC 213 (285)
T ss_dssp SEEEECSSC
T ss_pred CEEEECCCC
Confidence 999988875
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=92.74 E-value=0.0099 Score=57.64 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
++++++|+|+ |-+|+.++..|.+.|..+|+++++
T Consensus 126 ~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R 159 (283)
T 3jyo_A 126 KLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADL 159 (283)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEEC
Confidence 5689999997 899999999999999547998443
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=92.72 E-value=0.34 Score=47.11 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=63.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-----CCCCCCCCCCCcEEEEecCCCHHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-----SLLPDSLSSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-----~~l~~~~~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
.|+||-++| .|..|+.+++.|++.| ++|++.|+.... ..+-... ....+.. ...+.+..=+.|.+.++++
T Consensus 2 ~M~kIgfIG-lG~MG~~mA~~L~~~G-~~v~v~dr~~~~-~~~l~~~Ga~~a~s~~e~~--~~~dvv~~~l~~~~~v~~V 76 (300)
T 3obb_A 2 HMKQIAFIG-LGHMGAPMATNLLKAG-YLLNVFDLVQSA-VDGLVAAGASAARSARDAV--QGADVVISMLPASQHVEGL 76 (300)
T ss_dssp -CCEEEEEC-CSTTHHHHHHHHHHTT-CEEEEECSSHHH-HHHHHHTTCEECSSHHHHH--TTCSEEEECCSCHHHHHHH
T ss_pred CcCEEEEee-ehHHHHHHHHHHHhCC-CeEEEEcCCHHH-HHHHHHcCCEEcCCHHHHH--hcCCceeecCCchHHHHHH
Confidence 367999998 9999999999999999 599997765421 0000000 0000000 2345666667777777777
Q ss_pred HcCC----------CEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEE
Q 010005 82 LEGA----------STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (520)
Q Consensus 82 l~~~----------D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V 128 (520)
+.+. ++||.+... + ...++.+.+.+++.|+ +|+
T Consensus 77 ~~~~~g~~~~~~~g~iiId~sT~-----~--------p~~~~~~a~~~~~~G~-~~l 119 (300)
T 3obb_A 77 YLDDDGLLAHIAPGTLVLECSTI-----A--------PTSARKIHAAARERGL-AML 119 (300)
T ss_dssp HHSSSSSTTSCCC-CEEEECSCC-----C--------HHHHHHHHHHHHTTTC-EEE
T ss_pred HhchhhhhhcCCCCCEEEECCCC-----C--------HHHHHHHHHHHHHcCC-EEE
Confidence 6542 455655532 2 3445678888888887 555
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=92.67 E-value=0.53 Score=46.40 Aligned_cols=30 Identities=17% Similarity=0.076 Sum_probs=25.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhc--CCcEEEEe
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLEL--GKCIVRVT 39 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~--g~~~V~~~ 39 (520)
+||.|.|+ |++|+.+++.|.++ +..+|+++
T Consensus 1 ~kVgI~G~-G~iGr~llR~l~~~~~p~~eivai 32 (332)
T 1hdg_O 1 ARVAINGF-GRIGRLVYRIIYERKNPDIEVVAI 32 (332)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCTTCEEEEE
T ss_pred CEEEEEcc-CHHHHHHHHHHHhCCCCCeEEEEE
Confidence 47999999 99999999999987 55576654
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=92.67 E-value=0.073 Score=52.76 Aligned_cols=73 Identities=16% Similarity=0.119 Sum_probs=46.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCH---HHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI---SQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~---~~l~~~l~ 83 (520)
.+++|||+|| |-+|..+++.+...|. +|+++|+ ++.+..+...+ +... ..|..+. +.+.++..
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga-~Vi~~~~--------~~~~~~~~~~l---Ga~~-~~d~~~~~~~~~~~~~~~ 229 (339)
T 1rjw_A 164 PGEWVAIYGI-GGLGHVAVQYAKAMGL-NVVAVDI--------GDEKLELAKEL---GADL-VVNPLKEDAAKFMKEKVG 229 (339)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTC-EEEEECS--------CHHHHHHHHHT---TCSE-EECTTTSCHHHHHHHHHS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCC-EEEEEeC--------CHHHHHHHHHC---CCCE-EecCCCccHHHHHHHHhC
Confidence 4679999999 6699999999999994 9999543 33211111111 2222 2466543 23333335
Q ss_pred CCCEEEEccc
Q 010005 84 GASTVFYVDA 93 (520)
Q Consensus 84 ~~D~Vih~aa 93 (520)
++|+||++++
T Consensus 230 ~~d~vid~~g 239 (339)
T 1rjw_A 230 GVHAAVVTAV 239 (339)
T ss_dssp SEEEEEESSC
T ss_pred CCCEEEECCC
Confidence 7999999987
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=92.60 E-value=0.14 Score=43.87 Aligned_cols=31 Identities=23% Similarity=0.119 Sum_probs=27.2
Q ss_pred CCeEEEEcCC---ChhHHHHHHHHHhcCCcEEEEe
Q 010005 8 PRTCVVLNGR---GFVGRSLVLRLLELGKCIVRVT 39 (520)
Q Consensus 8 ~~~ILVtGat---GfIG~~lv~~L~~~g~~~V~~~ 39 (520)
.++|.|.|++ |-+|..+++.|.+.| ++|+.+
T Consensus 13 p~~vaVvGas~~~g~~G~~~~~~l~~~G-~~v~~v 46 (140)
T 1iuk_A 13 AKTIAVLGAHKDPSRPAHYVPRYLREQG-YRVLPV 46 (140)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTT-CEEEEE
T ss_pred CCEEEEECCCCCCCChHHHHHHHHHHCC-CEEEEe
Confidence 5789999998 899999999999999 577663
|
| >3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.58 E-value=0.26 Score=55.93 Aligned_cols=111 Identities=12% Similarity=0.067 Sum_probs=70.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC-----C---------CCCCCCCCCCCcEEEEe
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES-----N---------SLLPDSLSSGRAEYHQV 70 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~-----~---------~~l~~~~~~~~v~~~~~ 70 (520)
...+|+|.| .|-+|+.+++.|...|..+++++|.+. ..++.|.-- - ..+.+....-.++.+..
T Consensus 26 ~~s~VlIvG-~GGlGseiak~La~aGVg~itlvD~D~V~~sNL~RQ~l~~~~dvG~~Ka~a~~~~L~~lNP~v~v~~~~~ 104 (1015)
T 3cmm_A 26 QTSNVLILG-LKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGDVTRAKLAELNAYVPVNVLDS 104 (1015)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHHCCSEEEEECCSBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHTTSCTTSCEEECCC
T ss_pred hcCEEEEEC-CChHHHHHHHHHHHcCCCeEEEecCCEechhhhccccccChhhcChHHHHHHHHHHHHHCCCCeEEEecC
Confidence 357999998 577999999999999987899998763 112333210 0 01111111223455555
Q ss_pred cCCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccc
Q 010005 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (520)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg 137 (520)
++.+ +.++++|+||.+.. .|...-..+-++|++.++ .+|+.++.+.+|
T Consensus 105 ~l~~-----~~l~~~DvVv~~~d-------------~~~~~r~~ln~~c~~~~i-plI~~~~~G~~G 152 (1015)
T 3cmm_A 105 LDDV-----TQLSQFQVVVATDT-------------VSLEDKVKINEFCHSSGI-RFISSETRGLFG 152 (1015)
T ss_dssp CCCS-----TTGGGCSEEEECTT-------------SCHHHHHHHHHHHHHHTC-EEEEEEEETTEE
T ss_pred CCCH-----HHHhcCCEEEEcCC-------------CCHHHHHHHHHHHHHcCC-CEEEEEecccEE
Confidence 5532 35678999996532 023334567788999886 788888777665
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.54 E-value=0.13 Score=52.20 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=30.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~ 43 (520)
+.+|+|+|+ |-+|...++.+...|. +|+++|+..
T Consensus 190 ~~kV~ViG~-G~iG~~aa~~a~~lGa-~V~v~D~~~ 223 (405)
T 4dio_A 190 AAKIFVMGA-GVAGLQAIATARRLGA-VVSATDVRP 223 (405)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSST
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence 579999996 9999999999999995 999977654
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=92.53 E-value=0.053 Score=53.88 Aligned_cols=32 Identities=28% Similarity=0.252 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEe
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~ 39 (520)
.+.+|||+||+|-+|...++.+...|. +|++.
T Consensus 150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~ 181 (343)
T 3gaz_A 150 DGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT 181 (343)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE
Confidence 467999999999999999999999994 88883
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=92.51 E-value=0.04 Score=55.35 Aligned_cols=74 Identities=14% Similarity=0.246 Sum_probs=46.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCC--HHHHHHHHcCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD--ISQIKKVLEGA 85 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d--~~~l~~~l~~~ 85 (520)
+.+|||+|| |-+|..+++.+...|. +|++.|+... ...+..+.. .-+...+ | .+ .+++.+.-.++
T Consensus 181 g~~VlV~Ga-G~vG~~~~q~a~~~Ga-~Vi~~~~~~~-----~~~~~~~~~---~~ga~~v--~-~~~~~~~~~~~~~~~ 247 (366)
T 2cdc_A 181 CRKVLVVGT-GPIGVLFTLLFRTYGL-EVWMANRREP-----TEVEQTVIE---ETKTNYY--N-SSNGYDKLKDSVGKF 247 (366)
T ss_dssp TCEEEEESC-HHHHHHHHHHHHHHTC-EEEEEESSCC-----CHHHHHHHH---HHTCEEE--E-CTTCSHHHHHHHCCE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEeCCcc-----chHHHHHHH---HhCCcee--c-hHHHHHHHHHhCCCC
Confidence 689999999 9999999999999995 9999554320 001111111 1133444 5 44 12333311479
Q ss_pred CEEEEcccC
Q 010005 86 STVFYVDAT 94 (520)
Q Consensus 86 D~Vih~aa~ 94 (520)
|+||++++.
T Consensus 248 d~vid~~g~ 256 (366)
T 2cdc_A 248 DVIIDATGA 256 (366)
T ss_dssp EEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999974
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=92.51 E-value=0.54 Score=49.95 Aligned_cols=89 Identities=17% Similarity=0.170 Sum_probs=62.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHH-HcCCCE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAST 87 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~-l~~~D~ 87 (520)
++++|.|+ |-+|+++++.|.+.|+ +|+++|.+.. +- .+ . ...+.+|-+|++.+.++ ++++|+
T Consensus 349 ~~viIiG~-G~~G~~la~~L~~~g~-~v~vid~d~~----~~------~~-~----~~~i~gD~t~~~~L~~agi~~ad~ 411 (565)
T 4gx0_A 349 ELIFIIGH-GRIGCAAAAFLDRKPV-PFILIDRQES----PV------CN-D----HVVVYGDATVGQTLRQAGIDRASG 411 (565)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTC-CEEEEESSCC----SS------CC-S----SCEEESCSSSSTHHHHHTTTSCSE
T ss_pred CCEEEECC-CHHHHHHHHHHHHCCC-CEEEEECChH----HH------hh-c----CCEEEeCCCCHHHHHhcCccccCE
Confidence 78999985 9999999999999995 8999776532 11 11 1 17899999999888766 467999
Q ss_pred EEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEE
Q 010005 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLV 128 (520)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V 128 (520)
+|=+.+. + +.|+. +...|++.+.+ ++|
T Consensus 412 vi~~~~~-----d-----~~ni~----~~~~ak~l~~~~~ii 439 (565)
T 4gx0_A 412 IIVTTND-----D-----STNIF----LTLACRHLHSHIRIV 439 (565)
T ss_dssp EEECCSC-----H-----HHHHH----HHHHHHHHCSSSEEE
T ss_pred EEEECCC-----c-----hHHHH----HHHHHHHHCCCCEEE
Confidence 9855431 1 34443 44566777765 544
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=92.48 E-value=0.094 Score=52.69 Aligned_cols=75 Identities=15% Similarity=0.201 Sum_probs=49.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecC--------------
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV-------------- 72 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl-------------- 72 (520)
.+.+|+|+|+ |-+|...++.+...|. +|+++|+... |... ..+ -+.+++..|.
T Consensus 183 ~~~kV~ViG~-G~iG~~aa~~a~~lGa-~V~v~D~~~~----~l~~---~~~----lGa~~~~l~~~~~~~~gya~~~~~ 249 (381)
T 3p2y_A 183 KPASALVLGV-GVAGLQALATAKRLGA-KTTGYDVRPE----VAEQ---VRS----VGAQWLDLGIDAAGEGGYARELSE 249 (381)
T ss_dssp CCCEEEEESC-SHHHHHHHHHHHHHTC-EEEEECSSGG----GHHH---HHH----TTCEECCCC-------------CH
T ss_pred CCCEEEEECc-hHHHHHHHHHHHHCCC-EEEEEeCCHH----HHHH---HHH----cCCeEEeccccccccccchhhhhH
Confidence 3579999995 9999999999999995 8999776532 1000 000 1222222110
Q ss_pred ----CCHHHHHHHHcCCCEEEEcccC
Q 010005 73 ----RDISQIKKVLEGASTVFYVDAT 94 (520)
Q Consensus 73 ----~d~~~l~~~l~~~D~Vih~aa~ 94 (520)
.+.+.+.++++++|+||.++..
T Consensus 250 ~~~~~~~~~l~e~l~~aDIVI~tv~i 275 (381)
T 3p2y_A 250 AERAQQQQALEDAITKFDIVITTALV 275 (381)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred HHHhhhHHHHHHHHhcCCEEEECCCC
Confidence 1245678889999999988754
|
| >1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* | Back alignment and structure |
|---|
Probab=92.45 E-value=0.32 Score=49.86 Aligned_cols=112 Identities=14% Similarity=0.065 Sum_probs=68.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--CCC------------CCCCCCCCCcEEEEec
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--NSL------------LPDSLSSGRAEYHQVD 71 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~--~~~------------l~~~~~~~~v~~~~~D 71 (520)
..+|+|.|+ |-+|+++++.|...|..+++++|.+. ..++.|+.- ... +.+....-.++.+..+
T Consensus 40 ~~~VlvvG~-GGlGs~va~~La~aGvg~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~v~v~~~~~~ 118 (434)
T 1tt5_B 40 TCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNK 118 (434)
T ss_dssp TCCEEEECS-STHHHHHHHHHHHTTCCCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEESC
T ss_pred CCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCCCEEEEEecc
Confidence 578999995 66999999999999977899988754 122344310 000 0011112346667776
Q ss_pred CCCHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHC------------CCCEEEEeecccccc
Q 010005 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC------------KVRRLVYNSTADVVF 137 (520)
Q Consensus 72 l~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~------------gvkr~V~~SS~~vyg 137 (520)
+.+.. .+.++++|+||.+.. +.+. -..+-++|.+. ++ .+|+.++.+-+|
T Consensus 119 i~~~~--~~~~~~~DlVi~~~D------n~~~--------R~~in~~c~~~~~~~~g~~~~~~~i-Pli~~~~~g~~G 179 (434)
T 1tt5_B 119 IQDFN--DTFYRQFHIIVCGLD------SIIA--------RRWINGMLISLLNYEDGVLDPSSIV-PLIDGGTEGFKG 179 (434)
T ss_dssp GGGBC--HHHHTTCSEEEECCS------CHHH--------HHHHHHHHHHTCCBSSSCBCGGGCC-CEEEEEEETTEE
T ss_pred cchhh--HHHhcCCCEEEECCC------CHHH--------HHHHHHHHHHhhhccccccccccCC-cEEEecccccee
Confidence 65533 467889999997742 2222 22344566553 54 688888766554
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=92.39 E-value=0.22 Score=49.26 Aligned_cols=32 Identities=19% Similarity=0.067 Sum_probs=25.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEe
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~ 39 (520)
|++||.|.|. |.||+.+++.|.++...+|+++
T Consensus 2 M~ikVgI~G~-G~iGr~~~R~l~~~~~vevvaI 33 (335)
T 1u8f_O 2 GKVKVGVNGF-GRIGRLVTRAAFNSGKVDIVAI 33 (335)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHHCSSEEEEE
T ss_pred CceEEEEEcc-CHHHHHHHHHHHcCCCcEEEEe
Confidence 3479999996 9999999999998764576654
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=92.38 E-value=0.18 Score=46.21 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=27.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEec
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD 40 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D 40 (520)
.+|+|.|.| .|.+|+.++..|.+.| ++|++.|
T Consensus 18 ~~~~I~iiG-~G~mG~~la~~l~~~g-~~V~~~~ 49 (209)
T 2raf_A 18 QGMEITIFG-KGNMGQAIGHNFEIAG-HEVTYYG 49 (209)
T ss_dssp --CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEc
Confidence 468999999 8999999999999999 4999954
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.37 E-value=0.13 Score=51.74 Aligned_cols=75 Identities=16% Similarity=0.104 Sum_probs=47.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHH--c
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL--E 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l--~ 83 (520)
..+.+|||+||+|-+|...++.+...| .+|++.+... . ..+...+ +... ..|..+.+..+++. .
T Consensus 182 ~~g~~VlV~Ga~G~vG~~~~qla~~~G-a~Vi~~~~~~--------~-~~~~~~l---Ga~~-v~~~~~~~~~~~~~~~~ 247 (375)
T 2vn8_A 182 CTGKRVLILGASGGVGTFAIQVMKAWD-AHVTAVCSQD--------A-SELVRKL---GADD-VIDYKSGSVEEQLKSLK 247 (375)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECGG--------G-HHHHHHT---TCSE-EEETTSSCHHHHHHTSC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEeChH--------H-HHHHHHc---CCCE-EEECCchHHHHHHhhcC
Confidence 356799999999999999999999999 4888854211 1 0111111 2222 23554433223333 4
Q ss_pred CCCEEEEcccC
Q 010005 84 GASTVFYVDAT 94 (520)
Q Consensus 84 ~~D~Vih~aa~ 94 (520)
++|+||++++.
T Consensus 248 g~D~vid~~g~ 258 (375)
T 2vn8_A 248 PFDFILDNVGG 258 (375)
T ss_dssp CBSEEEESSCT
T ss_pred CCCEEEECCCC
Confidence 79999999873
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=92.34 E-value=0.43 Score=46.91 Aligned_cols=102 Identities=7% Similarity=0.058 Sum_probs=54.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--C
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~ 84 (520)
+++||.|.|+ |.+|+..++.|.+.+..+|+++ .+|++.+. ......-++.... .+++++++ +
T Consensus 4 ~~~rigiiG~-G~ig~~~~~~l~~~~~~~~~av-------~d~~~~~~--~~~a~~~~~~~~~------~~~~~ll~~~~ 67 (329)
T 3evn_A 4 SKVRYGVVST-AKVAPRFIEGVRLAGNGEVVAV-------SSRTLESA--QAFANKYHLPKAY------DKLEDMLADES 67 (329)
T ss_dssp -CEEEEEEBC-CTTHHHHHHHHHHHCSEEEEEE-------ECSCSSTT--CC---CCCCSCEE------SCHHHHHTCTT
T ss_pred CceEEEEEec-hHHHHHHHHHHHhCCCcEEEEE-------EcCCHHHH--HHHHHHcCCCccc------CCHHHHhcCCC
Confidence 4679999995 9999999999988764565542 23333211 1110111221111 23456666 6
Q ss_pred CCEEEEcccCCC-----------CCc-chhhHHhhhHHHHHHHHHHHHHCCC
Q 010005 85 ASTVFYVDATDL-----------NTD-DFYNCYMIIVQGAKNVVTACRECKV 124 (520)
Q Consensus 85 ~D~Vih~aa~~~-----------~~~-~~~~~~~~Nv~gt~~ll~aa~~~gv 124 (520)
+|+|+-+..... ... --+.-...|..-...+++++++.|+
T Consensus 68 ~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~ 119 (329)
T 3evn_A 68 IDVIYVATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAESCNL 119 (329)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTC
T ss_pred CCEEEECCCcHHHHHHHHHHHHCCCeEEEccCCcCCHHHHHHHHHHHHHcCC
Confidence 899886654310 000 0001124456667778888888775
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=92.33 E-value=0.37 Score=46.56 Aligned_cols=56 Identities=20% Similarity=0.218 Sum_probs=45.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHH--HHHc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIK--KVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~--~~l~ 83 (520)
..+++++|.|++|.+|+.++..|+++|. +|++.+ |... .+. +.++
T Consensus 163 l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~~--------~~T~------------------------~l~l~~~~~ 209 (300)
T 4a26_A 163 MAGKRAVVLGRSNIVGAPVAALLMKENA-TVTIVH--------SGTS------------------------TEDMIDYLR 209 (300)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEEC--------TTSC------------------------HHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEe--------CCCC------------------------Cchhhhhhc
Confidence 4578999999999999999999999994 899843 2110 234 7888
Q ss_pred CCCEEEEcccC
Q 010005 84 GASTVFYVDAT 94 (520)
Q Consensus 84 ~~D~Vih~aa~ 94 (520)
.+|+||...+.
T Consensus 210 ~ADIVI~Avg~ 220 (300)
T 4a26_A 210 TADIVIAAMGQ 220 (300)
T ss_dssp TCSEEEECSCC
T ss_pred cCCEEEECCCC
Confidence 99999998875
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=92.21 E-value=0.11 Score=49.36 Aligned_cols=62 Identities=10% Similarity=0.040 Sum_probs=42.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCC---cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGK---CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~---~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
++|+|.|.|+ |-+|+.++..|.+.|. ++|++.|+ ++.+ .++.. ..+ ..++++
T Consensus 3 ~~m~i~iiG~-G~mG~~~a~~l~~~g~~~~~~v~~~~~--------~~~~---------~g~~~----~~~---~~~~~~ 57 (262)
T 2rcy_A 3 ENIKLGFMGL-GQMGSALAHGIANANIIKKENLFYYGP--------SKKN---------TTLNY----MSS---NEELAR 57 (262)
T ss_dssp SSSCEEEECC-SHHHHHHHHHHHHHTSSCGGGEEEECS--------SCCS---------SSSEE----CSC---HHHHHH
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCCCCCCeEEEEeC--------Cccc---------CceEE----eCC---HHHHHh
Confidence 4579999995 9999999999999983 37998554 3321 12221 122 344566
Q ss_pred CCCEEEEccc
Q 010005 84 GASTVFYVDA 93 (520)
Q Consensus 84 ~~D~Vih~aa 93 (520)
++|+||-+..
T Consensus 58 ~~D~vi~~v~ 67 (262)
T 2rcy_A 58 HCDIIVCAVK 67 (262)
T ss_dssp HCSEEEECSC
T ss_pred cCCEEEEEeC
Confidence 8999997764
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=92.20 E-value=0.12 Score=51.66 Aligned_cols=77 Identities=14% Similarity=0.209 Sum_probs=46.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHH----H
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV----L 82 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~----l 82 (520)
.+.+|||+|+ |-+|...++.+...|...|++.|.. +.+..+...+ ...+..+..|-.+.+++.+. .
T Consensus 179 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~--------~~~~~~a~~l-~~~~~~~~~~~~~~~~~~~~v~~~t 248 (363)
T 3m6i_A 179 LGDPVLICGA-GPIGLITMLCAKAAGACPLVITDID--------EGRLKFAKEI-CPEVVTHKVERLSAEESAKKIVESF 248 (363)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESC--------HHHHHHHHHH-CTTCEEEECCSCCHHHHHHHHHHHT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC--------HHHHHHHHHh-chhcccccccccchHHHHHHHHHHh
Confidence 4679999998 9999999999999995348885543 2211111112 12233333443333333333 3
Q ss_pred c--CCCEEEEccc
Q 010005 83 E--GASTVFYVDA 93 (520)
Q Consensus 83 ~--~~D~Vih~aa 93 (520)
. ++|+||.+.+
T Consensus 249 ~g~g~Dvvid~~g 261 (363)
T 3m6i_A 249 GGIEPAVALECTG 261 (363)
T ss_dssp SSCCCSEEEECSC
T ss_pred CCCCCCEEEECCC
Confidence 2 6999999987
|
| >1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* | Back alignment and structure |
|---|
Probab=92.13 E-value=0.11 Score=54.72 Aligned_cols=114 Identities=11% Similarity=0.088 Sum_probs=68.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCC-----CCCC---------CCCCCCCCCCcEEEEec
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPS-----ESNS---------LLPDSLSSGRAEYHQVD 71 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~-----~~~~---------~l~~~~~~~~v~~~~~D 71 (520)
..+|+|.| .|-+|+.+++.|...|..+++++|.+. ..++.|. .+-+ .+.+....-.++.+..+
T Consensus 32 ~~~VlvvG-~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lNp~v~v~~~~~~ 110 (531)
T 1tt5_A 32 SAHVCLIN-ATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEES 110 (531)
T ss_dssp HCEEEEEC-CSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTCTTSBCCEESSC
T ss_pred cCeEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhCCCCeEEEeCCC
Confidence 46899998 577999999999999987899998764 0011121 1000 11111111223334433
Q ss_pred CCCH-HHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccc
Q 010005 72 VRDI-SQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (520)
Q Consensus 72 l~d~-~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg 137 (520)
+.+. +...+.++++|+||.+.. +. ..-..+-++|++.++ .+|..++.+.+|
T Consensus 111 ~~~~~~~~~~~~~~~DvVi~~~d------~~--------~~r~~ln~~c~~~~i-plI~~~~~G~~G 162 (531)
T 1tt5_A 111 PENLLDNDPSFFCRFTVVVATQL------PE--------STSLRLADVLWNSQI-PLLICRTYGLVG 162 (531)
T ss_dssp HHHHHHSCGGGGGGCSEEEEESC------CH--------HHHHHHHHHHHHTTC-CEEEEEEETTEE
T ss_pred cchhhhhhHHHhcCCCEEEEeCC------CH--------HHHHHHHHHHHHcCC-CEEEEEecCCeE
Confidence 3211 112345678999997742 22 233456688999986 689988887776
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=92.11 E-value=0.21 Score=51.80 Aligned_cols=103 Identities=13% Similarity=0.134 Sum_probs=68.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHH-HcC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKV-LEG 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~-l~~ 84 (520)
..++|+|.| .|-+|.++++.|. ++ ++|.+++.+. .++ .+.+.+ ++...+.||-+|++-+.+. ++.
T Consensus 234 ~~~~v~I~G-gG~ig~~lA~~L~-~~-~~v~iIE~d~--------~r~~~la~~l--~~~~Vi~GD~td~~~L~ee~i~~ 300 (461)
T 4g65_A 234 PYRRIMIVG-GGNIGASLAKRLE-QT-YSVKLIERNL--------QRAEKLSEEL--ENTIVFCGDAADQELLTEENIDQ 300 (461)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHT-TT-SEEEEEESCH--------HHHHHHHHHC--TTSEEEESCTTCHHHHHHTTGGG
T ss_pred cccEEEEEc-chHHHHHHHHHhh-hc-CceEEEecCH--------HHHHHHHHHC--CCceEEeccccchhhHhhcCchh
Confidence 357888887 8999999999975 45 5888855432 211 111222 4678999999999877665 677
Q ss_pred CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccccc
Q 010005 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (520)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vy 136 (520)
+|+++-+.+. . +.|+..+ -.|++.|++|.|-.=.-..|
T Consensus 301 ~D~~ia~T~~------D----e~Ni~~~----llAk~~gv~kvIa~vn~~~~ 338 (461)
T 4g65_A 301 VDVFIALTNE------D----ETNIMSA----MLAKRMGAKKVMVLIQRGAY 338 (461)
T ss_dssp CSEEEECCSC------H----HHHHHHH----HHHHHTTCSEEEEECSCHHH
T ss_pred hcEEEEcccC------c----HHHHHHH----HHHHHcCCccccccccccch
Confidence 9999955431 1 3455433 36788999998855444444
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=92.10 E-value=0.085 Score=53.80 Aligned_cols=71 Identities=21% Similarity=0.295 Sum_probs=47.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
.+++|+|+|+ |-+|+.+++.|...|..+|+++|+ +..+. .+...+ +... . +.+++.+.+.++
T Consensus 166 ~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r--------~~~ra~~la~~~---g~~~--~---~~~~l~~~l~~a 228 (404)
T 1gpj_A 166 HDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANR--------TYERAVELARDL---GGEA--V---RFDELVDHLARS 228 (404)
T ss_dssp TTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECS--------SHHHHHHHHHHH---TCEE--C---CGGGHHHHHHTC
T ss_pred cCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeC--------CHHHHHHHHHHc---CCce--e---cHHhHHHHhcCC
Confidence 5789999996 999999999999999548999554 33210 111111 1221 1 223566777899
Q ss_pred CEEEEcccC
Q 010005 86 STVFYVDAT 94 (520)
Q Consensus 86 D~Vih~aa~ 94 (520)
|+||.+.+.
T Consensus 229 DvVi~at~~ 237 (404)
T 1gpj_A 229 DVVVSATAA 237 (404)
T ss_dssp SEEEECCSS
T ss_pred CEEEEccCC
Confidence 999998764
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=92.06 E-value=0.39 Score=46.07 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=45.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
..+++++|.|++|.+|+.++..|+++|. +|++. .|.. ..+.+.++.+
T Consensus 159 l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~--------hs~t------------------------~~L~~~~~~A 205 (285)
T 3l07_A 159 TEGAYAVVVGASNVVGKPVSQLLLNAKA-TVTTC--------HRFT------------------------TDLKSHTTKA 205 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEE--------CTTC------------------------SSHHHHHTTC
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEE--------eCCc------------------------hhHHHhcccC
Confidence 4578999999999999999999999994 88883 2211 1356788899
Q ss_pred CEEEEcccC
Q 010005 86 STVFYVDAT 94 (520)
Q Consensus 86 D~Vih~aa~ 94 (520)
|+||...+.
T Consensus 206 DIVI~Avg~ 214 (285)
T 3l07_A 206 DILIVAVGK 214 (285)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999988875
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=92.05 E-value=0.14 Score=49.46 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=27.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEec
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD 40 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D 40 (520)
++|+|.|.| .|.+|+.++..|.+.|+ +|+++|
T Consensus 2 ~~m~i~iiG-~G~~G~~~a~~l~~~g~-~V~~~~ 33 (295)
T 1yb4_A 2 NAMKLGFIG-LGIMGSPMAINLARAGH-QLHVTT 33 (295)
T ss_dssp --CEEEECC-CSTTHHHHHHHHHHTTC-EEEECC
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHhCCC-EEEEEc
Confidence 457999998 79999999999999994 999865
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.05 E-value=0.75 Score=42.76 Aligned_cols=30 Identities=20% Similarity=0.213 Sum_probs=24.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEE-EEec
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIV-RVTD 40 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V-~~~D 40 (520)
|||.|.|. |.+|+.+++.|.+.| ++| .+.|
T Consensus 1 m~vgiIG~-G~mG~~~~~~l~~~g-~~lv~v~d 31 (236)
T 2dc1_A 1 MLVGLIGY-GAIGKFLAEWLERNG-FEIAAILD 31 (236)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHhcCC-CEEEEEEe
Confidence 58999996 999999999999878 476 5644
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 520 | ||||
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 4e-31 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 1e-30 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 5e-28 | |
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 2e-27 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 2e-22 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 8e-22 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 8e-21 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 6e-20 | |
| d1n7ha_ | 339 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr | 5e-17 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 6e-17 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 4e-16 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 3e-14 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 1e-13 | |
| d1ek6a_ | 346 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 1e-11 | |
| d2blla1 | 342 | c.2.1.2 (A:316-657) Polymyxin resistance protein A | 9e-11 | |
| d1xgka_ | 350 | c.2.1.2 (A:) Negative transcriptional regulator Nm | 1e-10 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 1e-10 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 1e-10 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 3e-10 | |
| d1gy8a_ | 383 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 5e-10 | |
| d1qyca_ | 307 | c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta | 9e-10 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 9e-08 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 3e-07 | |
| d1i24a_ | 393 | c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 | 7e-07 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 7e-05 |
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 121 bits (305), Expect = 4e-31
Identities = 67/364 (18%), Positives = 119/364 (32%), Gaps = 56/364 (15%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV 72
+ G GF+G ++V +++ + V D L + + L D S R + D+
Sbjct: 5 ITGGAGFIGSAVVRHIIKNTQDTVVNIDK-----LTYAGNLESLSDISESNRYNFEHADI 59
Query: 73 RDISQIKKVLEGAS--TVFYVDA---TDLNTDDFYNCYMIIVQGAKNVVTACREC----- 122
D ++I ++ E V ++ A D + + G ++ R+
Sbjct: 60 CDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALG 119
Query: 123 ----KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL------KAQAEALVL 172
R + ST +V D H + + KA ++ LV
Sbjct: 120 EDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVR 179
Query: 173 FANNIDGLLTCALRPSNVFGPGD--TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENV 230
GL T SN +GP +L+PL++ A G I G G+ + D+ YVE+
Sbjct: 180 AWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDH 239
Query: 231 AHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWY 290
A A AG + I K D + I + + T
Sbjct: 240 ARALHMVVTE------GKAGETYNIGGHNEKKNLDVVFTICD---LLDEIVPKATSYREQ 290
Query: 291 IILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSST 350
I + R D + +G+ P+ + E G+ T
Sbjct: 291 ITYVADRPGH--------------------DRRYAIDAGKISRELGWKPLETFESGIRKT 330
Query: 351 IQSF 354
++ +
Sbjct: 331 VEWY 334
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 119 bits (298), Expect = 1e-30
Identities = 64/347 (18%), Positives = 121/347 (34%), Gaps = 45/347 (12%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV 72
V G GF+G V +LL V + L + + + L + R + D+
Sbjct: 5 VTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDI 64
Query: 73 RDISQIKKVLEGASTVFY---VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129
RD + + L G + + D + VQG + ++ + V R+V+
Sbjct: 65 RDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVH 124
Query: 130 NSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSN 189
ST V GS D + E+ + KA ++ + + GL R N
Sbjct: 125 VSTNQV--YGSIDSGSWTESSPL--EPNSPYAASKAGSDLVARAYHRTYGLDVRITRCCN 180
Query: 190 VFGPGD--TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247
+GP +L+PL V G T + G G N+ ++ + ++
Sbjct: 181 NYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGR----- 235
Query: 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTY 307
AG + I + + I+L+ LG + + + ++ G
Sbjct: 236 -AGEIYHIGGGLELTNRELTGILLDSLGADWSSV--------------RKVADRKG---- 276
Query: 308 NHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
+ D ++ +GY P VS +G++ T++ +
Sbjct: 277 ------------HDLRYSLDGGKIERELGYRPQVSFADGLARTVRWY 311
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 112 bits (281), Expect = 5e-28
Identities = 50/358 (13%), Positives = 106/358 (29%), Gaps = 26/358 (7%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G G L LLE G V S + + + H D+ D
Sbjct: 9 VTGQDGSYLAEFLLEKG-YEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDT 67
Query: 76 SQIKKVLEGAS-----TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR---RL 127
S + ++L + + ++ + + G ++ A R + R
Sbjct: 68 SNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRF 127
Query: 128 VYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRP 187
ST+++ G ET + K A + + G+ C
Sbjct: 128 YQASTSELY--GLVQEIPQKETTPF--YPRSPYAVAKLYAYWITVNYRESYGMYACNGIL 183
Query: 188 SNVFGPG------DTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEAL 241
N P ++ + N+A+ + +G+ +++ D+ + ++ +
Sbjct: 184 FNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQ-- 241
Query: 242 DSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEK 301
F I F+ + LG + F ++ +
Sbjct: 242 -----QEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPG 296
Query: 302 LGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359
+ ++ Y T D A + +G+ P ++L E VS + + A+
Sbjct: 297 VKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAK 354
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 110 bits (275), Expect = 2e-27
Identities = 61/357 (17%), Positives = 113/357 (31%), Gaps = 73/357 (20%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAE------ 66
+ G GFVG L +L+ G + V D+ +GR
Sbjct: 6 ITGGAGFVGSHLTDKLMMDGHEVTVV-------------------DNFFTGRKRNVEHWI 46
Query: 67 -YHQVDVRDISQIKKVLEGASTVFYVDA---TDLNTDDFYNCYMIIVQGAKNVVTACREC 122
+ ++ + ++ + ++++ + + G N++ +
Sbjct: 47 GHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV 106
Query: 123 KVRRLVYNSTADVVFDGS-HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLL 181
R L+ ST++V D H + + K AE + +G+
Sbjct: 107 GAR-LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVE 165
Query: 182 TCALRPSNVFGPG----DTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCA 237
R N FGP D ++V + A G + GSG F YV ++ + V
Sbjct: 166 VRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVAL 225
Query: 238 AEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKW 297
+ S + N E +F +I +G +++
Sbjct: 226 MNSNVSS-------PVNLGNPEEHTILEFAQLIKNLVGSGSE---------------IQF 263
Query: 298 IHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
+ E + R D A+ +G+ PVV LEEG++ I F
Sbjct: 264 LSEAQD----------------DPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYF 304
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 96.2 bits (238), Expect = 2e-22
Identities = 68/354 (19%), Positives = 118/354 (33%), Gaps = 44/354 (12%)
Query: 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEY 67
P+ ++ GF+G +L+ LL+L + +V + + Q + E SL+ + S ++
Sbjct: 16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWS-NFKF 74
Query: 68 HQVDVR---DISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKV 124
Q D+R D + ++ + + + +D + G N++ A R+ KV
Sbjct: 75 IQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKV 134
Query: 125 RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCA 184
+ Y +++ G H E K K E + G T
Sbjct: 135 QSFTYAASSSTY--GDHPGLPKVED--TIGKPLSPYAVTKYVNELYADVFSRCYGFSTIG 190
Query: 185 LRPSNVFGPGD------TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238
LR NVFG ++P + G +I G GE DF Y+EN A++ AA
Sbjct: 191 LRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAA 250
Query: 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWI 298
A V + I + +GL +
Sbjct: 251 TAGLDARNQV----YNIAVGGRTSLNQLFFALRDGLAENGVSYHRE------PVYRDFRE 300
Query: 299 HEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQ 352
+ R D A K +GY+P + GV+ +
Sbjct: 301 GD--------------------VRHSLADISKAAKLLGYAPKYDVSAGVALAMP 334
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 94.6 bits (234), Expect = 8e-22
Identities = 66/397 (16%), Positives = 120/397 (30%), Gaps = 75/397 (18%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+ GF+ + RL G V +D ++ + E+H VD
Sbjct: 19 SITGAGGFIASHIARRLKHEG-HYVIASDWKKNEHMTEDMFC-----------DEFHLVD 66
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIV----QGAKNVVTACRECKVRRL 127
+R + KV EG VF + A + + +I+ + N++ A R ++R
Sbjct: 67 LRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRF 126
Query: 128 VYNSTADVVFDGSHDIHNGDETLTCCW---KFQDLMCDLKAQAEALVLFANNIDGLLTCA 184
Y S+A + + + QD K E L N G+
Sbjct: 127 FYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECRI 186
Query: 185 LRPSNVFGPGDT-------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCA 237
R N++GP T + G G FT+++ +
Sbjct: 187 GRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRL 246
Query: 238 AEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP--FIKLPTGVVWYIILLV 295
+ S I + E + + ++L + P I P GV
Sbjct: 247 TK-------SDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGV-------- 291
Query: 296 KWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF- 354
R R D ++ +G++P + L+EG+ T
Sbjct: 292 --------------------------RGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIK 325
Query: 355 SHLARDSSL-----AYSRDFNEQSKVEKLLGGGKVAD 386
+ ++ + Y ++ LG + AD
Sbjct: 326 EQIEKEKAKGSDVSLYGSSKVVGTQAPVQLGSLRAAD 362
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.6 bits (226), Expect = 8e-21
Identities = 47/359 (13%), Positives = 100/359 (27%), Gaps = 35/359 (9%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G G L LLE G + + + S E P + G + H D+ D
Sbjct: 9 ITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDS 68
Query: 76 SQIKKVLEGA-----STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR---RL 127
+ + K++ + ++ D + G ++ A + C + +
Sbjct: 69 TCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKF 128
Query: 128 VYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRP 187
ST+++ G ET + K A +V+ L
Sbjct: 129 YQASTSELY--GKVQEIPQKETTPF--YPRSPYGAAKLYAYWIVVNFREAYNLFAVNGIL 184
Query: 188 SNVFGPGD------TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEAL 241
N P ++ + + F +G+ + D+ + ++ A +
Sbjct: 185 FNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQND 244
Query: 242 DSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEK 301
+ +A K + + + G + + +
Sbjct: 245 EPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDL----- 299
Query: 302 LGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360
Y DC A++ + + P V+ +E V + + L R
Sbjct: 300 ------------KYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMRT 346
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 88.5 bits (218), Expect = 6e-20
Identities = 45/357 (12%), Positives = 99/357 (27%), Gaps = 54/357 (15%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
R+ +V G G L LLE G V + S++ L + G +Y
Sbjct: 1 RSALVTGITGQDGAYLAKLLLEKG-YRVHGLVA-----RRSSDTRWRLRELGIEGDIQYE 54
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNC-----YMIIVQGAKNVVTACRECK 123
D+ D +++ + A + + ++ G +++ A R+
Sbjct: 55 DGDMADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFS 114
Query: 124 VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTC 183
Y ++ +F G DE + K + + GL
Sbjct: 115 PETRFYQASTSEMF-GLIQAERQDENTPFYP--RSPYGVAKLYGHWITVNYRESFGLHAS 171
Query: 184 ALRPSNVFGPG------DTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCA 237
+ N P ++ + + + +G+ + D+ + + A
Sbjct: 172 SGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLM 231
Query: 238 AEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKW 297
+ + VA ++ + + P P V +
Sbjct: 232 LQQDKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLG----- 286
Query: 298 IHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
+ AQ+ +G+ P SL+E + +++
Sbjct: 287 -----------------------------NPAKAQRVLGWKPRTSLDELIRMMVEAD 314
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 80.1 bits (196), Expect = 5e-17
Identities = 43/355 (12%), Positives = 92/355 (25%), Gaps = 45/355 (12%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G G L LL G + + + + + P +++ + H D+ D
Sbjct: 9 ITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDA 68
Query: 76 SQIKKVLEGASTVFY-----VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130
S +++ ++ ++ + ++ GA ++ A R +
Sbjct: 69 SSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTV 128
Query: 131 STADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNV 190
++ T + + K A + GL C N
Sbjct: 129 KYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNH 188
Query: 191 FGPG------DTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSR 244
P ++ L + TK +G+ + D+ + + A +
Sbjct: 189 ESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQEKPD 248
Query: 245 MVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGL 304
VA + +L + + P V
Sbjct: 249 DYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQG------------ 296
Query: 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359
D A++ +G+ P V E+ V + LA+
Sbjct: 297 ----------------------DASKAKEVLGWKPQVGFEKLVKMMVDEDLELAK 329
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 80.0 bits (196), Expect = 6e-17
Identities = 52/358 (14%), Positives = 99/358 (27%), Gaps = 59/358 (16%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G G++G ++LL+ G ++ + + S S + + L + + D+R+
Sbjct: 8 GSGYIGSHTCVQLLQNGHDVIILDNLCNS-----KRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 76 SQIKKVLE--GASTVFYVDA---TDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130
+ + ++L TV + + Y V G +++A R V+ +++
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFS 122
Query: 131 STADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNV 190
S+A V D E+ + L LR N
Sbjct: 123 SSATVYGD--QPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 191 FGPGD------------TQLVPLLVNLAKPGWTKFII-GSGENMSDFTYVENVAHAHVCA 237
G L+P + +A I G+ D T V + H A
Sbjct: 181 VGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLA 240
Query: 238 AEALDSRMVSVAGMAFFITNL---EPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILL 294
+ + I NL D ++ + G + P
Sbjct: 241 DGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAP---------- 290
Query: 295 VKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQ 352
R D A + + + +L+E T
Sbjct: 291 ----------RREGD-----------LPAYWADASKADRELNWRVTRTLDEMAQDTWH 327
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 76.8 bits (188), Expect = 4e-16
Identities = 46/363 (12%), Positives = 100/363 (27%), Gaps = 79/363 (21%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV 72
+ RG VG ++ +L + G + V + ++++
Sbjct: 7 IAGHRGMVGSAIRRQLEQRG-DVELVLRT-------------------------RDELNL 40
Query: 73 RDISQIKKVLEGAST------VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRR 126
D + V N + + N++ A + V +
Sbjct: 41 LDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNK 100
Query: 127 LVYNSTADVVFD-GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCAL 185
L++ ++ + + + + K L N G ++
Sbjct: 101 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSV 160
Query: 186 RPSNVFGPGDTQLVPLLVNLAKPGWTKF-----------IIGSGENMSDFTYVENVAHAH 234
P+N++GP D + + GSG M +F +V+++A A
Sbjct: 161 MPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAAS 220
Query: 235 VCAAEALDSRMVSVAGMAFFITNL---EPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYI 291
+ E + N+ + I + +GY+ + +
Sbjct: 221 IHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDAS------ 274
Query: 292 ILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTI 351
+ R + +G+ +SLE G++ST
Sbjct: 275 --------------------------KPDGTPRKLLDVTRLHQLGWYHEISLEAGLASTY 308
Query: 352 QSF 354
Q F
Sbjct: 309 QWF 311
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 71.6 bits (174), Expect = 3e-14
Identities = 50/364 (13%), Positives = 107/364 (29%), Gaps = 63/364 (17%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G G++G V+ L+E G V + + S + + + L+ +++VD+ D
Sbjct: 9 GAGYIGSHTVVELIENGYDCVVADNLSNS-----TYDSVARLEVLTKHHIPFYEVDLCDR 63
Query: 76 SQIKKV--LEGASTVFYVDA---TDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130
++KV +V + +T Y + G ++ ++ V + V++
Sbjct: 64 KGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFS 123
Query: 131 STADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPS 188
S+A V D + + C + K E ++ N D LR
Sbjct: 124 SSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILRYF 183
Query: 189 NV--------FGPGDTQ----LVPLLVNLAKPGWTKFII-GSGENMSDFTYVENVAHAHV 235
N G L+P + +A K I G + D T + + H
Sbjct: 184 NPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIHVVD 243
Query: 236 CAAEALDSRM-------VSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVV 288
A + + + + + + ++ + G P+
Sbjct: 244 LAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTG---- 299
Query: 289 WYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVS 348
R T A++ + + + +E+
Sbjct: 300 ----------------RRAGD-----------VLNLTAKPDRAKRELKWQTELQVEDSCK 332
Query: 349 STIQ 352
+
Sbjct: 333 DLWK 336
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 69.6 bits (169), Expect = 1e-13
Identities = 55/357 (15%), Positives = 104/357 (29%), Gaps = 62/357 (17%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G GF+G + V + V VT L N +++ R E D+ D
Sbjct: 10 GAGFIGSNFVHYVYNNHP-DVHVT----VLDKLTYAGNKANLEAILGDRVELVVGDIADA 64
Query: 76 SQIKKVLEGASTVFY---VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRR------ 126
+ K+ A + + D + +D G ++ A R+ +R
Sbjct: 65 ELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTD 124
Query: 127 -LVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCAL 185
+ + G + T + KA ++ +V G+
Sbjct: 125 EVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSFGVKATIS 184
Query: 186 RPSNVFGPGD--TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243
SN +GP + +P + G + G G+N+ D+ + + +
Sbjct: 185 NCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAI------ 238
Query: 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKL----PTGVVWYIILLVKWIH 299
G + I + L +ILE +G + + Y I
Sbjct: 239 LTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAI------- 291
Query: 300 EKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSP-VVSLEEGVSSTIQSFS 355
D + +G++P EG+ TIQ ++
Sbjct: 292 ---------------------------DASKLRDELGWTPQFTDFSEGLEETIQWYT 321
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.6 bits (153), Expect = 1e-11
Identities = 44/366 (12%), Positives = 105/366 (28%), Gaps = 63/366 (17%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL-LPDSLSSGRAEYHQVD 71
V G G++G VL LLE G V + + + + S SL L+ E+ ++D
Sbjct: 7 VTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMD 66
Query: 72 VRDISQIKKVLEGASTVFY-----VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRR 126
+ D ++++ + S + + A + + Y + + G ++ + V+
Sbjct: 67 ILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVK- 125
Query: 127 LVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVL-FANNIDGLLTCAL 185
+ + + + + K E ++ L
Sbjct: 126 --NLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLL 183
Query: 186 RPSNVFGPGD------------TQLVPLLVNLA-------KPGWTKFIIGSGENMSDFTY 226
R N G L+P + +A + G + D+ +
Sbjct: 184 RYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIH 243
Query: 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTG 286
V ++A H+ A + + + + + G + P+ +
Sbjct: 244 VVDLAKGHIAAL---RKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVA-- 298
Query: 287 VVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEG 346
+ + + AQ+ +G++ + L+
Sbjct: 299 ---------RREGD--------------------VAACYANPSLAQEELGWTAALGLDRM 329
Query: 347 VSSTIQ 352
+
Sbjct: 330 CEDLWR 335
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Score = 61.1 bits (146), Expect = 9e-11
Identities = 40/360 (11%), Positives = 88/360 (24%), Gaps = 46/360 (12%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
++L GF+G L RLL V D + + L+ + + D
Sbjct: 4 LILGVNGFIGNHLTERLLREDHYEVYGLDI----------GSDAISRFLNHPHFHFVEGD 53
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131
+ S+ + V ++ + + + V+
Sbjct: 54 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRII 113
Query: 132 TADVVFDGSHDIHNGDETLTCCWKFQDL------MCDLKAQAEALVLFANNIDGLLTCAL 185
+ + K + ++ +GL
Sbjct: 114 FPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLF 173
Query: 186 ----------RPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHV 235
N G ++ + L+ G +I G+ FT + + A
Sbjct: 174 RPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALY 233
Query: 236 CAAEALDSRMVSVAGMAFFITNLEP-IKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILL 294
E + G I N E + ++L P + ++
Sbjct: 234 RIIE---NAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVES 290
Query: 295 VKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
+ + R A + + + P + ++E + T+ F
Sbjct: 291 SSYYGKGYQD----------------VEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFF 334
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Score = 60.8 bits (146), Expect = 1e-10
Identities = 29/285 (10%), Positives = 69/285 (24%), Gaps = 43/285 (15%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRA 65
+T V+ G G SL+ +G + V + +L +
Sbjct: 4 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEEL------------QAIPNV 51
Query: 66 EYHQVDVRD-ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKV 124
Q + + + + + EGA F + + K++ A +
Sbjct: 52 TLFQGPLLNNVPLMDTLFEGAHLAFINTTSQ---------AGDEIAIGKDLADAAKRAGT 102
Query: 125 RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCA 184
+ S+ + L + ++ NN L
Sbjct: 103 IQHYIYSSMPDHSLYGPWPAVPMWAPKFTVENYVRQLGLPSTFVYAGIYNNNFTSLPYPL 162
Query: 185 LRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSR 244
+ + P + +V A + + +
Sbjct: 163 FQMELMPDGTFEWHAP--------------FDPDIPLPWLDAEHDVGPALLQIFKDGPQK 208
Query: 245 MVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVW 289
G +T E + + L + ++++P +
Sbjct: 209 ---WNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVPKVEIK 249
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 60.6 bits (145), Expect = 1e-10
Identities = 26/274 (9%), Positives = 70/274 (25%), Gaps = 30/274 (10%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+++ G G++G+ +V + LG + +D + A+ +
Sbjct: 7 LIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQL----GAKLIEAS 62
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131
+ D ++ L+ V + +V A +E + S
Sbjct: 63 LDDHQRLVDALKQVDVVISA--------LAGGVLSHHILEQLKLVEAIKEAGNIKRFLPS 114
Query: 132 TADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVF 191
+ D + + + +
Sbjct: 115 EFGMDPDIMEHALQPGSITFIDKRKVRRAI--------------EAASIPYTYVSSNMFA 160
Query: 192 GPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGM 251
G L L ++ P I G G + ++V + + + + ++
Sbjct: 161 GYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTM--- 217
Query: 252 AFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPT 285
+ + + + + I I + +
Sbjct: 218 -YIRPPMNILSQKEVIQIWERLSEQNLDKIYISS 250
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 60.5 bits (145), Expect = 1e-10
Identities = 58/368 (15%), Positives = 109/368 (29%), Gaps = 73/368 (19%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G GF+G +L L G + V D+ L + L S G E+ D+R+
Sbjct: 8 GCGFLGSNLASFALSQG-IDLIVFDN-----LSRKGATDNLHWLSSLGNFEFVHGDIRNK 61
Query: 76 SQIKKVLEGAS-----TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRE-CKVRRLVY 129
+ + +++ + A + D+ + I V G N++ A R+ ++Y
Sbjct: 62 NDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIY 121
Query: 130 NSTADVVFDGSHDIHN------------GDETLTCCWKFQDLMCDLKAQAEALVLFANNI 177
+ST V D +N + F K A+ +L I
Sbjct: 122 SSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARI 181
Query: 178 DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTK----------FIIGSGENMSDFTYV 227
GL T R S+++G I G+G+ + D +
Sbjct: 182 FGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHA 241
Query: 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKL---P 284
E++ + A + + T + + + ++ + F L
Sbjct: 242 EDMISLYFTALANVSK--IRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRE 299
Query: 285 TGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLE 344
+ ++ D I +SP VS +
Sbjct: 300 SDQRVFVA----------------------------------DIKKITNAIDWSPKVSAK 325
Query: 345 EGVSSTIQ 352
+GV
Sbjct: 326 DGVQKMYD 333
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 59.4 bits (142), Expect = 3e-10
Identities = 43/375 (11%), Positives = 95/375 (25%), Gaps = 65/375 (17%)
Query: 4 DEAIPRTCVVL--NGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS 61
+ +P +VL GFV +V +LLE G VR T + S +
Sbjct: 5 NAVLPEGSLVLVTGANGFVASHVVEQLLEHG-YKVRGTARSAS---KLANLQKRWDAKYP 60
Query: 62 SGRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRE 121
D+ +V++GA+ V ++ + ++ + + G N + A
Sbjct: 61 GRFETAVVEDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAA 120
Query: 122 CKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL-----------------K 164
+ +++ V G W + + K
Sbjct: 121 TPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASK 180
Query: 165 AQAEALVLFANNIDGLLTCALRPS------NVFGPGDTQLVPLLVNLAKPGWTKFIIGSG 218
+AE + + +F P ++ +
Sbjct: 181 TEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALAL 240
Query: 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQR 278
+ ++ H+ ++ + L+ +
Sbjct: 241 MPPQYYVSAVDIGLLHLGC------LVLPQIERRRVYGTAGTFDWNTVLATFRK----LY 290
Query: 279 PFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYS 338
P P + + L ++ + S + K +G
Sbjct: 291 PSKTFPA----------DFPDQGQDLSKFDTAPS----------------LEILKSLGRP 324
Query: 339 PVVSLEEGVSSTIQS 353
S+EE + + S
Sbjct: 325 GWRSIEESIKDLVGS 339
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Score = 59.0 bits (141), Expect = 5e-10
Identities = 53/395 (13%), Positives = 104/395 (26%), Gaps = 92/395 (23%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDS------------TQSLQLDPSESNSLLPDSLSSG 63
G G++G V LL V + DS T+ + + +
Sbjct: 10 GAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADR 69
Query: 64 RAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK 123
A DVR+ + V + V + + NVV R +
Sbjct: 70 YAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQ 129
Query: 124 VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKA---------QAEALVLFA 174
L + + +++ + D+ AE ++
Sbjct: 130 AMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDC 189
Query: 175 NNIDGLLTCALRPSNVFG-----------PGDTQLVPLLVNLAKPGW------------- 210
G+ LR N G G T L+P+++
Sbjct: 190 AEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLTIHEDAS 249
Query: 211 ---------TKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL--- 258
T + G + D+ +V ++A AH+ A + ++ + F + NL
Sbjct: 250 TDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTS 309
Query: 259 EPIKFWDFLSIILEGLGYQRP--FIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYI 316
+ + + + G+ P G Y++
Sbjct: 310 RGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVA----------------------- 346
Query: 317 VQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTI 351
A++ +G+ P E + T
Sbjct: 347 ----------ASDKAREVLGWKPKYDTLEAIMETS 371
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Score = 57.5 bits (137), Expect = 9e-10
Identities = 29/273 (10%), Positives = 81/273 (29%), Gaps = 35/273 (12%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+++ G++GR + L+LG + + + ++ L +S + A
Sbjct: 7 LLIGATGYIGRHVAKASLDLG-HPTFLLVRESTASSNSEKAQLL--ESFKASGANIVHGS 63
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131
+ D + + + ++ V + ++ N++ A +E + + S
Sbjct: 64 IDDHASLVEAVKNVDVV------------ISTVGSLQIESQVNIIKAIKEVGTVKRFFPS 111
Query: 132 TADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVF 191
D H + K + + +G+ + +
Sbjct: 112 EFGNDVDNVHAVEPAKSVFEVKAKVRRAIEA---------------EGIPYTYVSSNCFA 156
Query: 192 GPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGM 251
G + A P I+G G F E++ + A + ++
Sbjct: 157 GYFLRS-LAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVD----DPRTLNKT 211
Query: 252 AFFITNLEPIKFWDFLSIILEGLGYQRPFIKLP 284
+ + + +++ + + +P
Sbjct: 212 LYLRLPANTLSLNELVALWEKKIDKTLEKAYVP 244
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 51.8 bits (122), Expect = 9e-08
Identities = 50/375 (13%), Positives = 94/375 (25%), Gaps = 51/375 (13%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+ V GF G L L L +G V+ L SL + + +
Sbjct: 9 KRVFVTGHTGFKGGWLSLWLQTMG-ATVKGYS------LTAPTVPSLFETARVADGMQSE 61
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDF-----YNCYMIIVQGAKNVVTACRECK 123
D+RD +++ + + Y V G ++ A R
Sbjct: 62 IGDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVG 121
Query: 124 VRRL-------VYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN 176
+ + ++ + G K + +
Sbjct: 122 GVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYG 181
Query: 177 IDGLLTCALRPSNVFGPGD--TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234
G +R NV G GD + + A II + + + +V +
Sbjct: 182 QHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGY 241
Query: 235 VCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILL 294
+ A+ L + A F N +K + +
Sbjct: 242 LLLAQKLYTDGAEYAEGWNFGPNDADATPVKN---------IVEQMVKYWGEGASWQLDG 292
Query: 295 VKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
HE + DC A+ +G+ P +L + +
Sbjct: 293 NAHPHE--------------------AHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWH 332
Query: 355 -SHLARDSSLAYSRD 368
+ L+ YS
Sbjct: 333 KNWLSGTDMHEYSIT 347
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 3e-07
Identities = 34/228 (14%), Positives = 70/228 (30%), Gaps = 44/228 (19%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+ G G + + + ++ G V V S A D
Sbjct: 7 AIFGATGQTGLTTLAQAVQAG-YEVTVLVRDSSRLPSEGPRP-----------AHVVVGD 54
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131
V + + K + G V + L T + + ++ +GA+N+V A + V ++V +
Sbjct: 55 VLQAADVDKTVAGQDAVIVL----LGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACT 110
Query: 132 TADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVF 191
+A +++D + + Q + D + L GL A+ P ++
Sbjct: 111 SAFLLWDPTKV----------PPRLQAVTDDHIRMHKVL-----RESGLKYVAVMPPHIG 155
Query: 192 GPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239
T + G S ++ H +
Sbjct: 156 DQPLTGAY-------------TVTLDGRGPSRVISKHDLGHFMLRCLT 190
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 49.2 bits (115), Expect = 7e-07
Identities = 41/356 (11%), Positives = 85/356 (23%), Gaps = 21/356 (5%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS-----------LSSGR 64
G G+ G + L L + + V + + L SL P + L+
Sbjct: 9 GDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKS 68
Query: 65 AEYHQVDVRDISQIKKVLEGASTVFYVDAT--------DLNTDDFYNCYMIIVQGAKNVV 116
E + D+ D + + + V ++ V G NV+
Sbjct: 69 IELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVL 128
Query: 117 TACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN 176
A +E + + + D + K + L +
Sbjct: 129 FAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVH 188
Query: 177 IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236
+ + + Q V V + + + + + F N
Sbjct: 189 DSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCVQAA 248
Query: 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVK 296
L + ++ + ++ V + LV
Sbjct: 249 VGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVT 308
Query: 297 WIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQ 352
KLGL ++ A +G P + + S +
Sbjct: 309 KAGSKLGLDVKKMTVPNPR--VEAEEHYYNAKHTKLMELGLEPHYLSDSLLDSLLN 362
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 42.1 bits (97), Expect = 7e-05
Identities = 21/252 (8%), Positives = 47/252 (18%), Gaps = 23/252 (9%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69
T +V G G+ + +L E + + ++
Sbjct: 5 TVLVTGASGRTGQIVYKKLKEGSD-KFVAKGLVR----SAQGKEKIGGEADVFIGDITDA 59
Query: 70 VDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129
+ Q L ++ + I G K +
Sbjct: 60 DSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAA 119
Query: 130 NSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSN 189
+ + + + G +R
Sbjct: 120 KVAGVKHIVVVGSMGGTNPDHPLNKLGNGNIL----VWKRKAEQYLADSGTPYTIIRAGG 175
Query: 190 VFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVA 249
+ LLV + +VA + A ++
Sbjct: 176 LLDKEGGV-RELLVGKDDELLQ--------TDTKTVPRADVAEVCIQALLFEEA-----K 221
Query: 250 GMAFFITNLEPI 261
AF + +
Sbjct: 222 NKAFDLGSKPEG 233
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 520 | |||
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 100.0 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 100.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 100.0 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 100.0 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 100.0 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 100.0 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 100.0 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 100.0 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 100.0 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 100.0 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 100.0 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 100.0 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 100.0 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 100.0 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 100.0 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 100.0 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.95 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.95 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.95 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.95 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.92 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.91 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.91 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.76 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.76 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.73 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.7 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.7 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.7 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.68 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.68 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.67 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.67 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.67 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.67 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.67 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.67 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.67 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.66 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.66 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.66 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.65 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.65 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.65 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.64 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.64 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.64 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.64 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.64 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.64 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.64 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.63 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.63 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.62 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.62 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.62 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.61 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.6 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.58 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.57 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.57 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.57 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.56 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.56 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.55 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.55 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.55 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.55 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.55 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.54 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.53 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.52 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.51 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.49 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.49 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.48 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.47 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.46 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.43 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.38 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 99.31 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.29 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.28 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.25 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.25 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 99.19 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.13 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 99.07 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 99.05 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 98.64 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.11 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.9 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 97.86 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.75 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 97.74 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.7 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.66 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.51 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.5 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.49 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.44 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.4 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.36 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.31 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.21 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.21 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.16 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.08 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.07 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.05 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.01 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.01 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.0 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 96.95 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.75 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 96.75 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 96.64 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 96.61 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.56 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 96.52 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 96.49 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.44 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 96.37 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 96.15 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 96.13 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.06 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.02 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 96.02 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 95.86 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 95.76 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.75 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 95.38 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.23 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 95.21 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.19 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 95.19 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 95.16 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.14 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 95.09 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 95.03 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 94.98 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 94.97 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 94.94 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 94.55 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 94.45 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 94.41 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 94.37 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 94.34 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 94.21 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 94.04 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 93.98 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 93.89 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 93.67 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 93.62 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 93.33 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 93.23 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 93.03 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 92.99 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 92.69 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 92.28 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 92.2 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 92.18 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 91.93 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 91.9 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 91.83 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 91.32 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 91.28 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 91.22 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 91.05 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 90.95 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 90.95 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 90.66 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 90.5 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 90.49 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 90.38 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 90.38 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 90.37 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 90.34 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 90.27 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 90.07 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 90.0 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 89.92 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 89.74 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 89.67 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 89.42 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 89.33 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 89.19 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 89.08 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 88.99 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 88.88 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 88.61 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 88.58 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 88.46 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 88.45 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 88.45 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 88.41 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 88.38 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 88.13 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 88.07 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 87.81 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 87.54 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 87.38 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 87.01 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 86.98 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 86.86 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 86.76 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 86.6 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 86.52 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 86.5 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 86.49 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 86.34 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 86.32 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 86.2 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 86.04 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 85.85 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 85.64 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 85.29 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 85.23 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 85.19 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 85.14 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 85.13 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 84.85 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 84.56 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 83.75 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 83.55 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 83.51 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 83.45 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 83.4 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 83.23 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 82.99 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 82.95 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 82.89 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 82.67 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 82.34 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 81.95 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 81.72 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 81.14 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 81.01 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 80.91 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 80.5 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 80.42 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 80.24 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 80.15 |
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=100.00 E-value=3.2e-48 Score=389.26 Aligned_cols=306 Identities=20% Similarity=0.235 Sum_probs=255.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCc-----EEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKC-----IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~-----~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
||||||||+||||++|++.|+++|+. +|+.+|... .......+.......+++++.+|+.+.........
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 75 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLT-----YAGNRANLAPVDADPRLRFVHGDIRDAGLLARELR 75 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCC-----TTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCC-----ccccHhHhhhhhcCCCeEEEEeccccchhhhcccc
Confidence 69999999999999999999999851 356655432 11111123333345689999999999999999999
Q ss_pred CCCEEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChH
Q 010005 84 GASTVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLM 160 (520)
Q Consensus 84 ~~D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y 160 (520)
++|.|+|+|+.. ....++...+++|+.|+.|++++|++.++++|||+||+++||.... .+.+|++ +..|.++|
T Consensus 76 ~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~~--~~~~E~~--~~~p~~~Y 151 (322)
T d1r6da_ 76 GVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDS--GSWTESS--PLEPNSPY 151 (322)
T ss_dssp TCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSS--SCBCTTS--CCCCCSHH
T ss_pred ccceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCCCC--CCCCCCC--CCCCCCHH
Confidence 999999999873 3345678889999999999999999999999999999999975543 4678887 66899999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC--CchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHH
Q 010005 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238 (520)
Q Consensus 161 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~ 238 (520)
+.+|..+|.+++.++++++++++++||+++|||++. .+++.++..+..|+++.++++|++.+||+|++|+|+++..++
T Consensus 152 ~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~~~~i~v~~~g~~~r~~i~v~D~a~ai~~~~ 231 (322)
T d1r6da_ 152 AASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVL 231 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcCcHHHHHHHHHHcCCCcEEecCCCeEEccEEHHHHHHHHHHHH
Confidence 999999999999999888999999999999999875 578999999999999999999999999999999999999999
Q ss_pred HhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHH
Q 010005 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQ 318 (520)
Q Consensus 239 ~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (520)
+ ....+++||+++++++++.|+++.+.+.+|.+.+.+... . ..+ ..
T Consensus 232 ~------~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~------------------~----~~~-~~----- 277 (322)
T d1r6da_ 232 A------GGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKV------------------A----DRK-GH----- 277 (322)
T ss_dssp H------HCCTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEE------------------C----CCT-TC-----
T ss_pred h------CCCCCCeeEEeecccchhHHHHHHHHHHhCCCccceeec------------------C----CCC-CC-----
Confidence 8 345678999999999999999999999999875433211 0 011 00
Q ss_pred HhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 319 LASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 319 ~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
...+.+|++|+++.|||+|+++++|||+++++||+++..
T Consensus 278 --~~~~~~d~~k~~~~lg~~p~~~~eegI~~~i~w~~~n~~ 316 (322)
T d1r6da_ 278 --DLRYSLDGGKIERELGYRPQVSFADGLARTVRWYRENRG 316 (322)
T ss_dssp --CCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHCHH
T ss_pred --CceeeeCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhHH
Confidence 113567999999999999999999999999999998653
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=2e-48 Score=397.11 Aligned_cols=315 Identities=21% Similarity=0.231 Sum_probs=250.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--CCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~~D 86 (520)
||||||||+||||++|+++|+++|++.|.++|... .......+......++++++++|++|.+.+.++++ ++|
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d 75 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLT-----YAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPD 75 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCC-----TTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCC-----ccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCC
Confidence 69999999999999999999999975677877532 22211233444556789999999999999999987 489
Q ss_pred EEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCC---------CCEEEEeecccccccCCCCCC--------CC
Q 010005 87 TVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECK---------VRRLVYNSTADVVFDGSHDIH--------NG 146 (520)
Q Consensus 87 ~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~g---------vkr~V~~SS~~vyg~~~~~~~--------~~ 146 (520)
+||||||.. .+..++..++++|+.||.+++++|++.+ ++||||+||..|||....... ..
T Consensus 76 ~VihlAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~ 155 (361)
T d1kewa_ 76 AVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLF 155 (361)
T ss_dssp EEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCB
T ss_pred EEEECccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCc
Confidence 999999973 2235778899999999999999998875 459999999999986543211 11
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC--CchHHHHHHhcCCCceEEecCCCccccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (520)
.|+. +..|.+.||.+|..+|.++..++++++++++++||++||||++. .+++.++..+..|+++.++|+|++.|+|
T Consensus 156 ~e~~--~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~g~~~~v~g~g~~~r~~ 233 (361)
T d1kewa_ 156 TETT--AYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDW 233 (361)
T ss_dssp CTTS--CCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEETTSCCEEEE
T ss_pred ccCC--CCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcCcHHHHHHHHHHcCCCcEEeCCCCeEEeC
Confidence 2333 56789999999999999999999888999999999999999875 5789999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcc
Q 010005 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGL 304 (520)
Q Consensus 225 i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~ 304 (520)
+|++|+|+|+..+++ ....+++|||++++++++.|+++.+.+.++...+....... ...
T Consensus 234 i~v~D~a~ai~~~~~------~~~~~~~~Ni~s~~~~s~~~~~~~i~~~~~~~~~~~~~~~~--------------~~~- 292 (361)
T d1kewa_ 234 LYVEDHARALHMVVT------EGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYRE--------------QIT- 292 (361)
T ss_dssp EEHHHHHHHHHHHHH------HCCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGG--------------GEE-
T ss_pred EEHHHHHHHHHHHHh------cCCCCCeEEECCCCCcchHHHHhHhhhhcccccccccCccc--------------cee-
Confidence 999999999999998 34567899999999999999999999887544322110000 000
Q ss_pred cccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
.....+ . ....+..|++|++++|||+|+++++|+|++|++||+++.+
T Consensus 293 ~~~~~~----~----~~~~~~~d~~k~~~~lgw~P~~~l~e~i~~ti~w~~~n~~ 339 (361)
T d1kewa_ 293 YVADRP----G----HDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQ 339 (361)
T ss_dssp EECCCT----T----CCCBCCBCCHHHHHHHCCCCSCCHHHHHHHHHHHHHHCHH
T ss_pred ecCCCC----C----CCceeeeCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhHH
Confidence 000011 0 0124567999999999999999999999999999988744
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.6e-47 Score=386.41 Aligned_cols=328 Identities=15% Similarity=0.094 Sum_probs=238.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCccc-ccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC--C
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSL-QLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--A 85 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~-~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~--~ 85 (520)
|++||||||||||++|+++|+++| ++|+++|+..+. +..|-... ........++++++++|++|.+++.+++++ +
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g-~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKG-YEVHGIKRRASSFNTERVDHI-YQDPHTCNPKFHLHYGDLSDTSNLTRILREVQP 79 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEECC----------------------CCEEECCCCSSCHHHHHHHHHHHCC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCc-CEEEEEECCCcccchhhHHHH-HhhhhhcCCCeEEEEeecCCHHHHHHHHhccCC
Confidence 789999999999999999999999 599997764321 01111000 000112346889999999999999999985 6
Q ss_pred CEEEEcccC---CCCCcchhhHHhhhHHHHHHHHHHHHHCCC---CEEEEeecccccccCCCCCCCCCCCccCCCCCCCh
Q 010005 86 STVFYVDAT---DLNTDDFYNCYMIIVQGAKNVVTACRECKV---RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDL 159 (520)
Q Consensus 86 D~Vih~aa~---~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gv---kr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~ 159 (520)
|+|||+||. ..+..++..++++|+.||.||+++|++.++ +||||+||++|||... ..+++|++ +..|.++
T Consensus 80 d~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~--~~~~~E~~--~~~P~~~ 155 (357)
T d1db3a_ 80 DEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQ--EIPQKETT--PFYPRSP 155 (357)
T ss_dssp SEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCC--SSSBCTTS--CCCCCSH
T ss_pred CEEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCC--CCCcCCCC--CCCCCCh
Confidence 999999998 455678899999999999999999999865 4799999999997533 34789988 5578999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCC-----chHHHHH-HhcCCCceEEecCCCcccccccHHHHHHH
Q 010005 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-----LVPLLVN-LAKPGWTKFIIGSGENMSDFTYVENVAHA 233 (520)
Q Consensus 160 Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~-----~~~~l~~-~~~~g~~~~i~g~g~~~~~~i~v~Dva~a 233 (520)
|+.||..+|++++.++++++++++++||+++|||+... .+...+. .+..+.....+|+|++.+||+||+|+|++
T Consensus 156 Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~D~~~a 235 (357)
T d1db3a_ 156 YAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKM 235 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcCCCchHHHHHHHHHHhCCCceEEECCCCeeecceeechHHHH
Confidence 99999999999999998889999999999999997542 2223333 33444555678999999999999999999
Q ss_pred HHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCch
Q 010005 234 HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSA 313 (520)
Q Consensus 234 i~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (520)
+..+++ ...++.||+++++++|++|+++.+.+.+|...+....+..... ..........+...
T Consensus 236 ~~~~~~-------~~~~~~yni~sg~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 298 (357)
T d1db3a_ 236 QWMMLQ-------QEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKG----------IVVSVTGHDAPGVK 298 (357)
T ss_dssp HHHTTS-------SSSCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEE----------EEEEECSSSCTTCC
T ss_pred HHHHHh-------CCCCCeEEECCCCceehHHHHHHHHHHhCCccccccccccccc----------hhhhhhcccccccc
Confidence 998876 2356799999999999999999999999854332111100000 00000000000000
Q ss_pred HHHH------H----HhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 314 CYIV------Q----LASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 314 ~~~~------~----~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
+... . .......+|++|++++|||+|+++++|+|+++++++.+..+
T Consensus 299 ~~~~~~~~~~~~~r~~~~~~~~~d~skakk~LGw~P~~sl~egI~~~I~~~l~~~k 354 (357)
T d1db3a_ 299 PGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAK 354 (357)
T ss_dssp TTCEEEEECGGGCCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred cCceeEeeccccCCCccccccccCHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHHh
Confidence 0000 0 00013456999999999999999999999999998777544
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-46 Score=373.95 Aligned_cols=299 Identities=21% Similarity=0.236 Sum_probs=241.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCE
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~ 87 (520)
.||||||||+||||++++++|+++| ++|+++|+..+ .+. ..+.......+++....|+.+ .++.++|+
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g-~~V~~~d~~~~---~~~---~~~~~~~~~~~~d~~~~~~~~-----~~~~~~d~ 68 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDG-HEVTVVDNFFT---GRK---RNVEHWIGHENFELINHDVVE-----PLYIEVDQ 68 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSS---CCG---GGTGGGTTCTTEEEEECCTTS-----CCCCCCSE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCCc---CCH---HHHHHhcCCCceEEEehHHHH-----HHHcCCCE
Confidence 3799999999999999999999999 59999876321 111 122222333456666666644 34568999
Q ss_pred EEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCcc---CCCCCCChHH
Q 010005 88 VFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLT---CCWKFQDLMC 161 (520)
Q Consensus 88 Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~---~~~~p~~~Y~ 161 (520)
|||+||.. .+..++...+++|+.|+.||+++|++.++ |+||+||++|||.... .+.+|+.. .|..|.++|+
T Consensus 69 VihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~-k~I~~SS~~vy~~~~~--~~~~e~~~~~~~~~~p~~~Y~ 145 (312)
T d2b69a1 69 IYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPEV--HPQSEDYWGHVNPIGPRACYD 145 (312)
T ss_dssp EEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGGBSCSS--SSBCTTCCCBCCSSSTTHHHH
T ss_pred EEECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEEChheecCCCC--CCCCccccCCCCCCCCccHHH
Confidence 99999972 23567889999999999999999999997 8999999999986433 24444321 1557889999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC----CchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHH
Q 010005 162 DLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT----QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCA 237 (520)
Q Consensus 162 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~----~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~ 237 (520)
.+|.++|.+++.+++++|++++++||++||||++. .+++.++..+..|+++.++++|++.++|+|++|+++++..+
T Consensus 146 ~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~i~~~i~~~~~g~~i~i~~~g~~~r~~i~v~D~~~~~~~~ 225 (312)
T d2b69a1 146 EGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVAL 225 (312)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEeeeEECCCCCCCCccHHHHHHHHHHcCCCeEEeCCCCeeEccEEHHHHHHHHHHH
Confidence 99999999999999889999999999999999864 47889999999999999999999999999999999999988
Q ss_pred HHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHH
Q 010005 238 AEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIV 317 (520)
Q Consensus 238 ~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (520)
++ ...++.||++++++++++|+++.+++.+|.+.+....|. .+ ..
T Consensus 226 ~~-------~~~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----------------------~~-~~---- 270 (312)
T d2b69a1 226 MN-------SNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSE-----------------------AQ-DD---- 270 (312)
T ss_dssp HT-------SSCCSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECC-----------------------CT-TC----
T ss_pred Hh-------hccCCceEecCCcccchhhHHHHHHHHhCCCCceEECCC-----------------------CC-CC----
Confidence 86 234668999999999999999999999998765433321 11 00
Q ss_pred HHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 318 QLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 318 ~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
......|++|++++|||+|+++++|||+++++||+++.+
T Consensus 271 ---~~~~~~d~~k~~~~lgw~p~~~l~~~I~~~i~w~~~~~~ 309 (312)
T d2b69a1 271 ---PQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELE 309 (312)
T ss_dssp ---CCCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred ---CCeeeECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 013566999999999999999999999999999998764
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=2.1e-45 Score=374.62 Aligned_cols=302 Identities=19% Similarity=0.178 Sum_probs=247.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
++.||||||||+||||++|+++|+++| ++|+++|+... .. ... .....++..+|++|.+++.++++++
T Consensus 13 ~~nMKILVTGgsGfIGs~lv~~L~~~g-~~V~~~d~~~~------~~---~~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (363)
T d2c5aa1 13 SENLKISITGAGGFIASHIARRLKHEG-HYVIASDWKKN------EH---MTE--DMFCDEFHLVDLRVMENCLKVTEGV 80 (363)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCC------SS---SCG--GGTCSEEEECCTTSHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEeCCCc------cc---hhh--hcccCcEEEeechhHHHHHHHhhcC
Confidence 367999999999999999999999999 59999775431 11 001 1235688999999999999999999
Q ss_pred CEEEEcccCCCC----CcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCC-----ccCCCCC
Q 010005 86 STVFYVDATDLN----TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDET-----LTCCWKF 156 (520)
Q Consensus 86 D~Vih~aa~~~~----~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~-----~~~~~~p 156 (520)
|+|||+|+.... ..++......|+.++.+++++|++.+++||||+||+.+||..... +.+|. ...+..|
T Consensus 81 d~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~~~~~~~--~~~~~~~~~~e~~~~~p 158 (363)
T d2c5aa1 81 DHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQL--ETTNVSLKESDAWPAEP 158 (363)
T ss_dssp SEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSS--SSSSCEECGGGGSSBCC
T ss_pred CeEeecccccccccccccccccccccccchhhHHHHhHHhhCccccccccccccccccccc--cccccccccccCCcCCC
Confidence 999999987332 567888999999999999999999999999999999999865432 22221 1226688
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC-------CchHHHHHHhcCCCceEEecCCCcccccccHHH
Q 010005 157 QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVEN 229 (520)
Q Consensus 157 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~-------~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~D 229 (520)
.++|+.+|.++|++++.+.+++|++++++||+++|||++. ............+.+...+++|++.++|+|++|
T Consensus 159 ~~~Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D 238 (363)
T d2c5aa1 159 QDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDE 238 (363)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCcccccccccccccccccccccccccccCCCCeEEEEeehhH
Confidence 9999999999999999999888999999999999999864 123344445566777789999999999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCC
Q 010005 230 VAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNH 309 (520)
Q Consensus 230 va~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (520)
+++++..+++ ...+++||+++++++++.|+++.+.+.+|.+.+....|.
T Consensus 239 ~~~~~~~~~~-------~~~~~~~ni~~~~~~s~~~l~~~i~~~~g~~~~i~~~~~------------------------ 287 (363)
T d2c5aa1 239 CVEGVLRLTK-------SDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPG------------------------ 287 (363)
T ss_dssp HHHHHHHHHH-------SSCCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECC------------------------
T ss_pred HHHHHHHHHh-------CCCCCeEEEecCCcccHHHHHHHHHHHhCCCCceEeCCC------------------------
Confidence 9999998887 235679999999999999999999999998866554441
Q ss_pred CCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhc
Q 010005 310 SLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (520)
Q Consensus 310 ~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~ 360 (520)
+.. ...+.+|++|+++.|||+|+++++|||++|++||+++.+.
T Consensus 288 ~~~--------~~~~~~d~ska~~~LGw~p~~sleegi~~ti~w~~~~~~~ 330 (363)
T d2c5aa1 288 PEG--------VRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIEK 330 (363)
T ss_dssp CCC--------CSBCEECCHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCC--------ccccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 100 1245679999999999999999999999999999887653
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=1.4e-46 Score=380.23 Aligned_cols=318 Identities=21% Similarity=0.204 Sum_probs=254.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
+++|+|||||||||||++|+++|+++| ++|+++|+..+...........+.......+++++.+|+.|...+.....++
T Consensus 14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~ 92 (341)
T d1sb8a_ 14 AQPKVWLITGVAGFIGSNLLETLLKLD-QKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV 92 (341)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCc-CEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccccc
Confidence 356899999999999999999999999 5999988633100000000000011112346899999999999999999999
Q ss_pred CEEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHH
Q 010005 86 STVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (520)
Q Consensus 86 D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~ 162 (520)
++|+|+++.. .+..++...+++|+.|+.+++++|+++++++|||+||+++||... ..+.+|++ +..|.+.|+.
T Consensus 93 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~--~~~~~E~~--~~~p~~~Y~~ 168 (341)
T d1sb8a_ 93 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHP--GLPKVEDT--IGKPLSPYAV 168 (341)
T ss_dssp SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCC--CSSBCTTC--CCCCCSHHHH
T ss_pred cccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCC--CCCccCCC--CCCCCCcchH
Confidence 9999999873 245678889999999999999999999999999999999997654 34688887 6689999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEecCccccCCCC------CchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHH
Q 010005 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236 (520)
Q Consensus 163 sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~------~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ 236 (520)
+|..+|+++..++++.+++++++||+++|||+.. .+++.++..+..|+++.++++|.+.++|+||+|+++|+..
T Consensus 169 sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~~~~~g~~i~~~g~g~~~r~~i~v~D~~~a~~~ 248 (341)
T d1sb8a_ 169 TKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLL 248 (341)
T ss_dssp HHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCCCCchhhhHHHHHHHHHcCCceEEcCCCCEEEEEEEEeccchhhhh
Confidence 9999999999999888999999999999998753 4678888899999999999999999999999999999998
Q ss_pred HHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHH
Q 010005 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYI 316 (520)
Q Consensus 237 ~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (520)
++.. .....++.||+++++..|++|+++.+.+.++.+......... ..+..+.
T Consensus 249 ~~~~----~~~~~~~~~~~~~~~~~si~~i~~~i~~~~~~~~~~~~~~~~----------------------~~~~~~~- 301 (341)
T d1sb8a_ 249 AATA----GLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPV----------------------YRDFREG- 301 (341)
T ss_dssp HHTC----CGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCE----------------------EECCCTT-
T ss_pred hhhc----cccccceeeeecccccchHHHHHHHHHHHhcccccccccccc----------------------ccCCCCC-
Confidence 8872 234568899999999999999999999998765432221100 0000000
Q ss_pred HHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhh
Q 010005 317 VQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (520)
Q Consensus 317 ~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~ 358 (520)
.......|++|+++.|||+|+++++|||+++++||+++.
T Consensus 302 ---~~~~~~~d~~k~~~~LGw~p~~sl~~gi~~ti~wy~~~~ 340 (341)
T d1sb8a_ 302 ---DVRHSLADISKAAKLLGYAPKYDVSAGVALAMPWYIMFL 340 (341)
T ss_dssp ---CCSBCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHHT
T ss_pred ---CcCeeeeCHHHHHHHHCCCcCCCHHHHHHHHHHHHHHhc
Confidence 011356799999999999999999999999999999864
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.4e-45 Score=370.80 Aligned_cols=310 Identities=18% Similarity=0.191 Sum_probs=244.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--CCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~~D 86 (520)
||||||||+||||++|++.|+++| ++|+++|+..+ .+.... ...+.....+++++++|++|.+.+.++++ ++|
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g-~~V~~~d~~~~---~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d 75 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCN---SKRSVL-PVIERLGGKHPTFVEGDIRNEALMTEILHDHAID 75 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSS---CCTTHH-HHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCCC---cchhhH-HHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCC
Confidence 689999999999999999999999 59999886431 111100 00011224579999999999999999998 799
Q ss_pred EEEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHH
Q 010005 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (520)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~s 163 (520)
+|||+||... +..++..++++|+.||.|++++|++.+++||||+||.++|+..... +..|+.+ +..|.++|+.+
T Consensus 76 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy~~~~~~--~~~e~~~-~~~p~~~Y~~s 152 (338)
T d1udca_ 76 TVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKI--PYVESFP-TGTPQSPYGKS 152 (338)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSS--SBCTTSC-CCCCSSHHHHH
T ss_pred EEEECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCcceEEcccccc--ccccccc-cCCCcchHHHH
Confidence 9999999732 3357789999999999999999999999999999999999755432 3344332 56789999999
Q ss_pred HHHHHHHHHHhcC-CCCceEEEEecCccccCCCC------------CchHHHHHHhcC-CCceEEecC------CCcccc
Q 010005 164 KAQAEALVLFANN-IDGLLTCALRPSNVFGPGDT------------QLVPLLVNLAKP-GWTKFIIGS------GENMSD 223 (520)
Q Consensus 164 K~~~E~~~~~~~~-~~gi~~~ilRp~~vyGp~~~------------~~~~~l~~~~~~-g~~~~i~g~------g~~~~~ 223 (520)
|..+|.++..+.. ..+++++++|++++|||++. .+++.+...+.. +.++.+.|+ |++.+|
T Consensus 153 K~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~rd 232 (338)
T d1udca_ 153 KLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232 (338)
T ss_dssp HHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCSSSTTSSCEEC
T ss_pred HhhhhHHHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccHHHHHHHHHHHHhcCCCCEEEeCCCcccCCCCceee
Confidence 9999999986554 45899999999999998653 356677766654 445666664 788999
Q ss_pred cccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhc
Q 010005 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLG 303 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~ 303 (520)
|+|++|++.++..+.+.+. ....+++||+++++++++.|+++.+.+.+|.+.+....|.
T Consensus 233 ~i~v~D~~~~~~~~~~~~~---~~~~~~i~Ni~~~~~~si~e~~~~i~~~~g~~~~~~~~~~------------------ 291 (338)
T d1udca_ 233 YIHVMDLADGHVVAMEKLA---NKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPR------------------ 291 (338)
T ss_dssp EEEHHHHHHHHHHHHHHHT---TCCEEEEEEESCSSCEEHHHHHHHHHHHHTSCCCEEEECC------------------
T ss_pred EEEEeehhhhccccccccc---cccCcceeeecCCCCCcHHHHHHHHHHHHCCCCceEECCC------------------
Confidence 9999999999988877543 3445679999999999999999999999998765443331
Q ss_pred ccccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhc
Q 010005 304 LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (520)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~ 360 (520)
.+ .. .....+|++|++++|||+|+++++|||+++++||+++.+.
T Consensus 292 -----~~----~~----~~~~~~d~~k~~~~lgwkp~~~l~egi~~ti~w~~~~~~~ 335 (338)
T d1udca_ 292 -----RE----GD----LPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQG 335 (338)
T ss_dssp -----CT----TC----CSBCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCTTC
T ss_pred -----CC----CC----CCEeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHhchhh
Confidence 01 00 0145679999999999999999999999999999998654
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=4.7e-45 Score=369.71 Aligned_cols=307 Identities=18% Similarity=0.213 Sum_probs=247.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCc-EEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~-~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
||+|||||||||||++|+++|+++|+. .|+++|. +.+......+ ......+++++.+|++|.+.+.++++++|
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~-----~~~~~~~~~~-~~~~~~~i~~~~~Di~d~~~~~~~~~~~~ 75 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDK-----LTYAGNKANL-EAILGDRVELVVGDIADAELVDKLAAKAD 75 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEEC-----CCTTCCGGGT-GGGCSSSEEEEECCTTCHHHHHHHHTTCS
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeC-----CCccccHHHH-HHhhcCCeEEEEccCCCHHHHHHHHhhhh
Confidence 699999999999999999999999952 3555553 2222221111 22345689999999999999999999999
Q ss_pred EEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCC----------CCCCCCCccCC
Q 010005 87 TVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHD----------IHNGDETLTCC 153 (520)
Q Consensus 87 ~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~----------~~~~~E~~~~~ 153 (520)
.|+|+|+.. .+..++...+++|+.|+.|++++|++.+. ++|++||.++||..... ....+|++ +
T Consensus 76 ~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~-k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~--~ 152 (346)
T d1oc2a_ 76 AIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAET--N 152 (346)
T ss_dssp EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTS--C
T ss_pred hhhhhhhcccccchhhCcccceeeehHhHHhhhhhhccccc-cccccccceEecccCccccccccccCcccccccCC--C
Confidence 999999873 23467888999999999999999999996 89999999999753211 11233443 5
Q ss_pred CCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC--CchHHHHHHhcCCCceEEecCCCcccccccHHHHH
Q 010005 154 WKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVA 231 (520)
Q Consensus 154 ~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva 231 (520)
..|.+.||.+|.++|.+++.++++++++++++||+++|||++. ..+..++..+..|.++.++++|++.++|+|++|+|
T Consensus 153 ~~p~s~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~i~~~g~~~r~~i~v~D~a 232 (346)
T d1oc2a_ 153 YNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHS 232 (346)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTTSHHHHHHHHHHHTCCCEEETTSCCEEECEEHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCCccchhHHHHHHHHcCCceeEeCCCCccccccchhhHH
Confidence 6889999999999999999999888999999999999999764 56777777777888889999999999999999999
Q ss_pred HHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCC
Q 010005 232 HAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSL 311 (520)
Q Consensus 232 ~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (520)
++++.+++ ....++.||++++++.++.|+++.+.+.++.+...+... . ..+
T Consensus 233 ~a~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------------------~----~~~- 283 (346)
T d1oc2a_ 233 TGVWAILT------KGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHV------------------T----DRA- 283 (346)
T ss_dssp HHHHHHHH------HCCTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEE------------------C----CCT-
T ss_pred HHHHHHHh------hcccCccccccccccccchHHHHHHHHHhCCCCcceEEC------------------C----CCC-
Confidence 99998888 456678999999999999999999999998865433211 0 011
Q ss_pred chHHHHHHhccceEechHHHHHhcCCCCCC-CHHHHHHHHHHHHHhhhh
Q 010005 312 SACYIVQLASRTRTFDCIAAQKHIGYSPVV-SLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 312 ~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~-sleegi~~~~~~~~~~~~ 359 (520)
.. ...+..|++|++++|||+|++ +++|||+++++||+++..
T Consensus 284 ~~-------~~~~~~d~~k~~~~LGw~P~~t~l~e~i~~ti~w~~~n~~ 325 (346)
T d1oc2a_ 284 GH-------DLRYAIDASKLRDELGWTPQFTDFSEGLEETIQWYTDNQD 325 (346)
T ss_dssp TC-------CCBCCBCCHHHHHHHCCCCSCCCHHHHHHHHHHHHHHTHH
T ss_pred CC-------CceeeeCHHHHHHHHCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 00 013456999999999999987 699999999999998754
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-45 Score=371.31 Aligned_cols=319 Identities=17% Similarity=0.155 Sum_probs=246.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHH-HHcCCCE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK-VLEGAST 87 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~-~l~~~D~ 87 (520)
||||||||+||||++++++|+++||++|+++|+... ........++++++++|++|.+++.+ +++++|+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~----------~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~ 70 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD----------AISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDV 70 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCG----------GGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCc----------chhhhccCCCeEEEECccCChHHHHHHHHhCCCc
Confidence 689999999999999999999999889999776321 11122245689999999998765554 6778999
Q ss_pred EEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCc-----cCCCCCCCh
Q 010005 88 VFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETL-----TCCWKFQDL 159 (520)
Q Consensus 88 Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~-----~~~~~p~~~ 159 (520)
|||+|+.. ....++...+..|+.|+.|++++|++.++ +++|.||+.+||...... .+|.. .....|.+.
T Consensus 71 Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~-~~~~~ss~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~ 147 (342)
T d2blla1 71 VLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRK-RIIFPSTSEVYGMCSDKY--FDEDHSNLIVGPVNKPRWI 147 (342)
T ss_dssp EEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTC-EEEEECCGGGGBTCCCSS--BCTTTCCCBCCCTTCGGGH
T ss_pred cccccccccccccccCCccccccccccccccccccccccc-cccccccccccccccccc--cccccccccccccCCCcch
Confidence 99999973 23456678899999999999999999997 678999999998654322 12211 114467789
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC----------CchHHHHHHhcCCCceEEecCCCcccccccHHH
Q 010005 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT----------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVEN 229 (520)
Q Consensus 160 Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~----------~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~D 229 (520)
|+.||..+|+++..+++++|++++++|++.+|||+.. ..++.++..+..|+++.++++|++.++|+|++|
T Consensus 148 Y~~sK~~~E~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~r~~i~v~D 227 (342)
T d2blla1 148 YSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRD 227 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHH
T ss_pred hhhcccchhhhhhhhhcccCceeEEeeccccccccccccccccccccccchHHHHHHHhCCCccccCCCCeeeeeccccc
Confidence 9999999999999999889999999999999998653 246778888888999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCceEEEeCCC-CcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccC
Q 010005 230 VAHAHVCAAEALDSRMVSVAGMAFFITNLE-PIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYN 308 (520)
Q Consensus 230 va~ai~~~~~~~~~~~~~~~g~~yni~~~~-~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~ 308 (520)
+|+++..+++.. .....|++|||++++ ++|+.|+++.+.+.+|.......+|........ .
T Consensus 228 ~~~a~~~~~~~~---~~~~~g~~~Nig~~~~~~t~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~---------------~ 289 (342)
T d2blla1 228 GIEALYRIIENA---GNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVV---------------E 289 (342)
T ss_dssp HHHHHHHHHHCG---GGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC----------------
T ss_pred ccceeeeehhhc---cccCCCeEEEEecccchhHHHHHHHHHHHHhCCCccccccCccccccee---------------c
Confidence 999999999832 134568999998765 489999999999999987666555422100000 0
Q ss_pred CCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 309 HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
.......... ....+..|++|++++|||+|+++++|||+++++||+++.+
T Consensus 290 ~~~~~~~~~~-~~~~~~~d~~k~~~~lgw~P~~sleegl~~ti~~y~~~~~ 339 (342)
T d2blla1 290 SSSYYGKGYQ-DVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVD 339 (342)
T ss_dssp ------------CCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHSC
T ss_pred cccccccccc-cccccccCHHHHHHHHCCCcCCCHHHHHHHHHHHHHhCcC
Confidence 0000000000 0123457999999999999999999999999999988754
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=9.5e-44 Score=355.74 Aligned_cols=306 Identities=15% Similarity=0.110 Sum_probs=239.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC--CC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--AS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~--~D 86 (520)
|+||||||+||||++|+++|+++| ++|+++|+..+ ......+......++++++.+|++|.+.+.+.+.+ .+
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g-~~V~~~~r~~~-----~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 74 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKG-YRVHGLVARRS-----SDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQ 74 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCS-----SCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCCC-----cccHHHHHHhcccCCcEEEEccccChHHhhhhhcccccc
Confidence 689999999999999999999999 69999765431 00011122223346789999999999999988864 68
Q ss_pred EEEEcccC---CCCCcchhhHHhhhHHHHHHHHHHHHHCCC-CEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHH
Q 010005 87 TVFYVDAT---DLNTDDFYNCYMIIVQGAKNVVTACRECKV-RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (520)
Q Consensus 87 ~Vih~aa~---~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gv-kr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~ 162 (520)
+++|+|+. .....++..+++.|+.|+.|++++|+++++ ++|+++||+.+||.... ...+|++ +..|.+.|+.
T Consensus 75 ~~~~~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~--~~~~E~~--~~~p~~~Y~~ 150 (321)
T d1rpna_ 75 EVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQA--ERQDENT--PFYPRSPYGV 150 (321)
T ss_dssp EEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSS--SSBCTTS--CCCCCSHHHH
T ss_pred ccccccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccC--CCCCCCC--CccccChhHH
Confidence 99999887 234467788999999999999999999984 58888999888864433 3567877 6689999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEecCccccCCCC--C----chHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHH
Q 010005 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--Q----LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236 (520)
Q Consensus 163 sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~--~----~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ 236 (520)
+|.++|+++..++.+++++++++||+++|||... . +.+.+.+.+..+.+...+|+|++.++|+|++|+|+++..
T Consensus 151 sK~~~E~~~~~~~~~~~~~~~~lr~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~i~~g~g~~~r~~i~v~D~~~~~~~ 230 (321)
T d1rpna_ 151 AKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWL 230 (321)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEEEecccCCCccccccHHHHHHHHHHHHhCCCCcEEECCCCeEEccEEeHHHHHHHHH
Confidence 9999999999999888999999999999999653 2 223333334455565678999999999999999999999
Q ss_pred HHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCc-ccCChHHHHHHHHHHHHHHHHhcccccCCCCchHH
Q 010005 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPF-IKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACY 315 (520)
Q Consensus 237 ~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~-v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (520)
+++ ...++.||+++++..++.++++.+.+.+|.+.+. +.++... ..| .
T Consensus 231 ~~~-------~~~~~~~ni~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~rp----~ 279 (321)
T d1rpna_ 231 MLQ-------QDKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAF--------------------FRP----A 279 (321)
T ss_dssp HHH-------SSSCCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGG--------------------CCS----S
T ss_pred HHh-------cCCcCCceecccccceehhhhHHHHHHhCCCccceeecCCCC--------------------CCC----C
Confidence 998 2235689999999999999999999999876432 2221100 000 0
Q ss_pred HHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 316 IVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 316 ~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
....+..|++|+++.|||+|+++++|+|++|++|+.+..+
T Consensus 280 ----~~~~~~~d~~k~~k~lG~~P~~~l~e~i~~tv~~~l~~~~ 319 (321)
T d1rpna_ 280 ----EVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADLRRVS 319 (321)
T ss_dssp ----CCCBCCBCTHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred ----ccCCccCCHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHhc
Confidence 0113566999999999999999999999999999988643
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-42 Score=350.75 Aligned_cols=312 Identities=15% Similarity=0.186 Sum_probs=241.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC--CCC--CCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS--LLP--DSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~--~l~--~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
.+|||||||+||||++|+++|+++| ++|+++|+... ..++.... ... ......+++++++|++|.+++.+++.
T Consensus 2 ~kKILITG~tGfIGs~lv~~Ll~~g-~~V~~ld~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~ 78 (346)
T d1ek6a_ 2 AEKVLVTGGAGYIGSHTVLELLEAG-YLPVVIDNFHN--AFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFK 78 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTT-CCEEEEECSSS--SCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHH
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCc-CEEEEEECCCc--cccccccchHHHHHHHHhcCCCcEEEEeecccccccccccc
Confidence 4799999999999999999999999 59999886432 11211100 000 11234678999999999999999887
Q ss_pred C--CCEEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCC
Q 010005 84 G--ASTVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQD 158 (520)
Q Consensus 84 ~--~D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~ 158 (520)
+ +++|+|+||.. .+..+|...++.|+.||.+++++|++.++++|||+||..+||....... .+++ ....|.+
T Consensus 79 ~~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i~~ss~~~~~~~~~~~~-~~~~--~~~~~~~ 155 (346)
T d1ek6a_ 79 KYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPL-DEAH--PTGGCTN 155 (346)
T ss_dssp HCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSB-CTTS--CCCCCSS
T ss_pred ccccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcccccccccceeeeccccccc-cccc--cccccCC
Confidence 5 56899999973 2335688899999999999999999999999999999999987654321 1111 1456788
Q ss_pred hHHHHHHHHHHHHHHhcCC-CCceEEEEecCccccCCCC------------CchHHHHHH-hcCCCceEEec------CC
Q 010005 159 LMCDLKAQAEALVLFANNI-DGLLTCALRPSNVFGPGDT------------QLVPLLVNL-AKPGWTKFIIG------SG 218 (520)
Q Consensus 159 ~Y~~sK~~~E~~~~~~~~~-~gi~~~ilRp~~vyGp~~~------------~~~~~l~~~-~~~g~~~~i~g------~g 218 (520)
+|+.+|..+|+.+..+++. .+++.+++||+++|||+.. .+++.+... ...+.++.+.+ +|
T Consensus 156 ~Y~~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~g 235 (346)
T d1ek6a_ 156 PYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDG 235 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSS
T ss_pred hHHHHHHHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCccccccHHHHHHHHHHHHHcCCCcEEEcCCcccCCCC
Confidence 9999999999999987653 5899999999999998642 245555554 34566666654 57
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHH
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWI 298 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~ 298 (520)
.+.|||+|++|+|.++..+++.. .....+++|||++++++++.|+++.+.+.+|.+.+....|.
T Consensus 236 ~~~Rdfi~v~D~a~~~~~~~~~~---~~~~~~~i~Ni~~~~~~s~~dl~~~i~~~~~~~~~~~~~~~------------- 299 (346)
T d1ek6a_ 236 TGVRDYIHVVDLAKGHIAALRKL---KEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVAR------------- 299 (346)
T ss_dssp SCEECEEEHHHHHHHHHHHHHHH---TTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECC-------------
T ss_pred CeeEeEEEEEeccchhhhhcccc---ccccCceEEEeCCCCcccHHHHHHHHHHHhCCCCCeEECCC-------------
Confidence 78899999999999999887643 23456789999999999999999999999998766544331
Q ss_pred HHHhcccccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 299 HEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
.+ .. ......|++|++++|||+|+++++|+|+++++||+++..
T Consensus 300 ----------~~----~e----~~~~~~d~~k~~~~lgw~p~~slee~I~~~i~w~~~n~~ 342 (346)
T d1ek6a_ 300 ----------RE----GD----VAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPS 342 (346)
T ss_dssp ----------CT----TC----CSEECBCCHHHHHTTCCCCCCCHHHHHHHHHHHHHHCTT
T ss_pred ----------CC----CC----CCEeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHhCHh
Confidence 11 00 113567999999999999999999999999999998764
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.9e-43 Score=353.02 Aligned_cols=313 Identities=16% Similarity=0.177 Sum_probs=239.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHc--CC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE--GA 85 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~~ 85 (520)
|.||||||+||||++|++.|+++| ++|+++|+. .++.... .........+++++++|++|.+.+.++++ ++
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g-~~V~~~d~~-----~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 75 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENG-YDCVVADNL-----SNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKI 75 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECC-----SSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCc-CeEEEEECC-----CCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCC
Confidence 569999999999999999999999 599998753 2221100 00011123578999999999999999887 79
Q ss_pred CEEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCC--CCCCCCCCccCCCCCCChH
Q 010005 86 STVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSH--DIHNGDETLTCCWKFQDLM 160 (520)
Q Consensus 86 D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~--~~~~~~E~~~~~~~p~~~Y 160 (520)
|+|||+||.. ....++..+..+|+.|+.+++++|++.+++||||+||..|||.... ...+.+|+. +..|.++|
T Consensus 76 d~VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS~~vyg~~~~~~~~~~~~e~~--~~~p~~~Y 153 (347)
T d1z45a2 76 DSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEEC--PLGPTNPY 153 (347)
T ss_dssp CEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTS--CCCCCSHH
T ss_pred CEEEEccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecceeeecCcccCCCCCcccccc--CCCCCChh
Confidence 9999999983 3345678899999999999999999999999999999999986643 233566766 66889999
Q ss_pred HHHHHHHHHHHHHhc--CCCCceEEEEecCccccCCCC------------CchHHHHHHhc-CCCceEEecCC------C
Q 010005 161 CDLKAQAEALVLFAN--NIDGLLTCALRPSNVFGPGDT------------QLVPLLVNLAK-PGWTKFIIGSG------E 219 (520)
Q Consensus 161 ~~sK~~~E~~~~~~~--~~~gi~~~ilRp~~vyGp~~~------------~~~~~l~~~~~-~g~~~~i~g~g------~ 219 (520)
+.+|..+|++++.+. ...+++++++||+++||++.. .+++.+...+. .++++.+.|++ .
T Consensus 154 ~~sK~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~ 233 (347)
T d1z45a2 154 GHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGT 233 (347)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSS
T ss_pred HhHHHHHHHHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCccccHHHHHHHHHHHHhcCCCCeEEeCCCccccCCc
Confidence 999999999998875 346899999999999997542 24666666554 45556666654 4
Q ss_pred cccccccHHHHHHHHHHHHHhhhcc-cccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHH
Q 010005 220 NMSDFTYVENVAHAHVCAAEALDSR-MVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWI 298 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~~~~~~-~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~ 298 (520)
+.+|++++.|++.+++.+++.+... .....+++||++++++++++|+++.+.+.+|.+.+....+..
T Consensus 234 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~------------ 301 (347)
T d1z45a2 234 PIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRR------------ 301 (347)
T ss_dssp CEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC------------------
T ss_pred eeeeeeeeecccccccccccccccccccccccccceecCCCcccHHHHHHHHHHHHCCCCceEeCCCC------------
Confidence 5667888888889998888765432 233456899999999999999999999999987553322200
Q ss_pred HHHhcccccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhc
Q 010005 299 HEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (520)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~ 360 (520)
+.. .....+|++|++++|||+|+++++|+|+++++||+++...
T Consensus 302 ---------------~~~----~~~~~~d~sk~~~~lGw~p~~~lee~i~~ti~w~~~np~~ 344 (347)
T d1z45a2 302 ---------------AGD----VLNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTTENPFG 344 (347)
T ss_dssp ----------------------CCCCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHCTTC
T ss_pred ---------------CCC----CCEeeECHHHHHHHHCCCCCCCHHHHHHHHHHHHHhChhc
Confidence 000 0145679999999999999999999999999999998654
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.7e-42 Score=344.81 Aligned_cols=325 Identities=16% Similarity=0.105 Sum_probs=239.6
Q ss_pred CeE-EEEcCCChhHHHHHHHHHhcCCcEEEEecCCccc-ccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--C
Q 010005 9 RTC-VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSL-QLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (520)
Q Consensus 9 ~~I-LVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~-~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~ 84 (520)
||| |||||+||||+||+++|+++| ++|+++|+..+. ...+-.............+++++.+|++|.+.+.++++ +
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g-~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 79 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKG-YEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK 79 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCc-CEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhcc
Confidence 578 999999999999999999999 599998875421 01111100000011123478999999999999999986 5
Q ss_pred CCEEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCCC---CEEEEeecccccccCCCCCCCCCCCccCCCCCCC
Q 010005 85 ASTVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKV---RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQD 158 (520)
Q Consensus 85 ~D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~gv---kr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~ 158 (520)
+++|+|+++.. .+..++...+++|+.||.|++++|+++++ +||||+||++|||.. ...+++|++ +..|.+
T Consensus 80 ~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~--~~~~~~E~~--~~~P~~ 155 (347)
T d1t2aa_ 80 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKV--QEIPQKETT--PFYPRS 155 (347)
T ss_dssp CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSC--SSSSBCTTS--CCCCCS
T ss_pred cceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCC--CCCCCCCCC--CCCCCC
Confidence 78999999873 23456777889999999999999999875 489999999999753 334788988 568999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCC------chHHHHHHhcCCCceEEecCCCcccccccHHHHHH
Q 010005 159 LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ------LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAH 232 (520)
Q Consensus 159 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~------~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ 232 (520)
+||.||.++|+++..++++++++++++||+++|||+... ....+......+.+...+|+|++.++|+|++|+++
T Consensus 156 ~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~g~~~r~~i~v~D~~~ 235 (347)
T d1t2aa_ 156 PYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVE 235 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCccccccceeeehhhcCCcceeecCCCcceeeeeEecHHHH
Confidence 999999999999999988889999999999999997542 23344555667777788999999999999999999
Q ss_pred HHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCC---
Q 010005 233 AHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNH--- 309 (520)
Q Consensus 233 ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~--- 309 (520)
++..+++ .. ..+.|+++.....++.+..+.+...++........+... .+......
T Consensus 236 a~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~ 294 (347)
T d1t2aa_ 236 AMWLMLQ------ND-EPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENE--------------VGRCKETGKVH 294 (347)
T ss_dssp HHHHHHH------SS-SCCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGC--------------EEEETTTCCEE
T ss_pred HHHHHhh------cC-CCccceeccccccccchhhhhhhhhhcceeeecccchhh--------------hhhhhhcCCce
Confidence 9999998 22 345789999999999999999999998764322111000 00000000
Q ss_pred CCchHHHHH-HhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhh
Q 010005 310 SLSACYIVQ-LASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (520)
Q Consensus 310 ~~~~~~~~~-~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~ 359 (520)
...+....+ .....+.+|++|++++|||+|+++++|+|++++++..+..+
T Consensus 295 ~~~~~~~~rp~~~~~~~~d~skak~~Lgw~P~~sl~e~i~~~I~~~~~~~k 345 (347)
T d1t2aa_ 295 VTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMR 345 (347)
T ss_dssp EEECGGGSCSSCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred eeecccCCCCCCcCEeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHHh
Confidence 000000000 00113456999999999999999999999999988766543
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=1.4e-41 Score=348.74 Aligned_cols=313 Identities=18% Similarity=0.143 Sum_probs=241.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhc-CCcEEEEecCCcccccCCCCCC-----------------CCCCCCCCCCCcEEEE
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESN-----------------SLLPDSLSSGRAEYHQ 69 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~-g~~~V~~~D~~~~~~l~r~~~~-----------------~~l~~~~~~~~v~~~~ 69 (520)
.||||||||+||||++|+++|+++ | ++|+++|.- .++... ...........+.++.
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~-~~V~~~D~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTN-HSVVIVDSL-----VGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEV 75 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCC-CEEEEEECC-----TTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEE
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCC-CEEEEEecC-----CcccccchhhhhhhhHHHHhhhhccccccccccceEEEE
Confidence 479999999999999999999974 6 699999852 222110 0011112235688999
Q ss_pred ecCCCHHHHHHHHc---CCCEEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCC
Q 010005 70 VDVRDISQIKKVLE---GASTVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 70 ~Dl~d~~~l~~~l~---~~D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~ 143 (520)
+|++|.+.+.++++ ++|+|||+|+.. ....++....+.|+.++.+++++|++.+++++++.||.++|+......
T Consensus 76 ~Di~d~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~ 155 (383)
T d1gy8a_ 76 GDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGS 155 (383)
T ss_dssp SCTTCHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC--
T ss_pred CcccCHHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCccccccccccccccccccc
Confidence 99999999999886 579999999973 233467778999999999999999999999999999999997654322
Q ss_pred -----CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC-----------CchHHHHHH--
Q 010005 144 -----HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-----------QLVPLLVNL-- 205 (520)
Q Consensus 144 -----~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~-----------~~~~~l~~~-- 205 (520)
.+..|+. +..|.++|+.+|..+|+++..+.+.+|++++++||+++|||++. .+++.++..
T Consensus 156 ~~~~~~~~~e~~--~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~ 233 (383)
T d1gy8a_ 156 VSTNAEPIDINA--KKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVM 233 (383)
T ss_dssp ---CCCCBCTTS--CCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHH
T ss_pred cccccccccccc--CCCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCccccccccccccchhHHHHHHHHH
Confidence 2344544 66899999999999999999999889999999999999999874 234444332
Q ss_pred --------------hcCCCceEEec------CCCcccccccHHHHHHHHHHHHHhhhccc---ccCCCceEEEeCCCCcC
Q 010005 206 --------------AKPGWTKFIIG------SGENMSDFTYVENVAHAHVCAAEALDSRM---VSVAGMAFFITNLEPIK 262 (520)
Q Consensus 206 --------------~~~g~~~~i~g------~g~~~~~~i~v~Dva~ai~~~~~~~~~~~---~~~~g~~yni~~~~~~t 262 (520)
+..++++.+.| ||.+.|||+|++|+|+++..+++.+.... ....+++||++++++++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~~~~s 313 (383)
T d1gy8a_ 234 SDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYS 313 (383)
T ss_dssp HHHSCC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEE
T ss_pred hhccccccchhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhccccccccccCccEEEeCCCCcee
Confidence 23455556655 58889999999999999999998654321 24456899999999999
Q ss_pred HHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCC
Q 010005 263 FWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVS 342 (520)
Q Consensus 263 ~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~s 342 (520)
+.|+++.+.+.+|.+.+....+ ..+ .. ......|++|++++|||+|+++
T Consensus 314 ~~el~~~i~~~~~~~~~~~~~~-----------------------~~~----~d----~~~~~~d~~k~~k~LGw~P~~~ 362 (383)
T d1gy8a_ 314 VREVIEVARKTTGHPIPVRECG-----------------------RRE----GD----PAYLVAASDKAREVLGWKPKYD 362 (383)
T ss_dssp HHHHHHHHHHHHCCCCCEEEEC-----------------------CCT----TC----CSEECBCCHHHHHHTCCCCSCC
T ss_pred HHHHHHHHHHHhCCCCceEECC-----------------------CCC----CC----cCEeeeCHHHHHHHHCCccCCC
Confidence 9999999999999876544332 111 00 0245669999999999999999
Q ss_pred HHHHHHHH-HHHHHhhhh
Q 010005 343 LEEGVSST-IQSFSHLAR 359 (520)
Q Consensus 343 leegi~~~-~~~~~~~~~ 359 (520)
++|+|+++ +.|++.+..
T Consensus 363 l~e~i~~t~~~w~~~~~~ 380 (383)
T d1gy8a_ 363 TLEAIMETSWKFQRTHPN 380 (383)
T ss_dssp SHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHhCcc
Confidence 99999997 588887643
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.1e-41 Score=337.81 Aligned_cols=290 Identities=17% Similarity=0.190 Sum_probs=229.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--CC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GA 85 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~~ 85 (520)
.|||||||||||||++|+++|+++|+ .|+++|. .. +.|+.|.+.+.++++ ++
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~-~vi~~~~--------~~-----------------~~~~~~~~~~~~~~~~~~~ 55 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGD-VELVLRT--------RD-----------------ELNLLDSRAVHDFFASERI 55 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTT-EEEECCC--------TT-----------------TCCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcC-EEEEecC--------ch-----------------hccccCHHHHHHHHhhcCC
Confidence 46999999999999999999999994 7777332 11 148899999998886 48
Q ss_pred CEEEEcccCCC----CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCC---CCCCC
Q 010005 86 STVFYVDATDL----NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCC---WKFQD 158 (520)
Q Consensus 86 D~Vih~aa~~~----~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~---~~p~~ 158 (520)
|+|+|+|+... ...++...++.|+.||.|++++|++++++||||+||.+|||.... .+.+|+.+.. ..|.+
T Consensus 56 d~v~~~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~~--~~~~E~~~~~~~~~~~~~ 133 (315)
T d1e6ua_ 56 DQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAK--QPMAESELLQGTLEPTNE 133 (315)
T ss_dssp SEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCC--SSBCGGGTTSSCCCGGGH
T ss_pred CEEEEcchhccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCCCC--CCccCCccccCCCCCCCC
Confidence 99999997622 234567788999999999999999999999999999999975433 3567765432 23456
Q ss_pred hHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCC------chH-----HHHHHhcCCCceEEecCCCcccccccH
Q 010005 159 LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ------LVP-----LLVNLAKPGWTKFIIGSGENMSDFTYV 227 (520)
Q Consensus 159 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~------~~~-----~l~~~~~~g~~~~i~g~g~~~~~~i~v 227 (520)
+|+.||.++|+++..+++++|++++++||++||||++.. ... ........+.++.+.++|.+.++|+|+
T Consensus 134 ~Y~~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~v 213 (315)
T d1e6ua_ 134 PYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHV 213 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCCCCccccccceeeeccchhhhhccCCceEEcCCCceEEEEEEe
Confidence 799999999999999998889999999999999998741 122 234456678888999999999999999
Q ss_pred HHHHHHHHHHHHhhhcc---cccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcc
Q 010005 228 ENVAHAHVCAAEALDSR---MVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGL 304 (520)
Q Consensus 228 ~Dva~ai~~~~~~~~~~---~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~ 304 (520)
+|+++++..+++..... ........++++.+.+.++.++++.+.+.+|.+......|
T Consensus 214 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~i~~~~-------------------- 273 (315)
T d1e6ua_ 214 DDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDA-------------------- 273 (315)
T ss_dssp HHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEET--------------------
T ss_pred ehhHHHHHHhhhhccccccccccccccccccCCCcchHHHHHHHHHHHHhCCCcceEECC--------------------
Confidence 99999999998743221 1233456899999999999999999999999875433222
Q ss_pred cccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhh
Q 010005 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (520)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~ 357 (520)
..|.. ...+.+|++|+++ |||+|+++++|+|+++++||+++
T Consensus 274 ---~~~~~--------~~~~~~d~sk~k~-Lg~~p~~~l~e~i~~ti~w~~~N 314 (315)
T d1e6ua_ 274 ---SKPDG--------TPRKLLDVTRLHQ-LGWYHEISLEAGLASTYQWFLEN 314 (315)
T ss_dssp ---TSCCC--------CSBCCBCCHHHHH-TTCCCCCCHHHHHHHHHHHHHHT
T ss_pred ---CCCCC--------CceeccCHHHHHH-cCCCCCCCHHHHHHHHHHHHHHc
Confidence 11100 0134579999975 99999999999999999999975
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=1.4e-41 Score=342.47 Aligned_cols=312 Identities=15% Similarity=0.135 Sum_probs=236.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCccc-ccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--C
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSL-QLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~-~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~ 84 (520)
.|++||||||||||+||++.|+++| ++|+++|+..+. ...+...............++++.+|+++.+++.+.++ +
T Consensus 1 ~k~~LVTGatGfiG~~lv~~Ll~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~ 79 (339)
T d1n7ha_ 1 RKIALITGITGQDGSYLTEFLLGKG-YEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK 79 (339)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCc-CEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhc
Confidence 3789999999999999999999999 599998874321 01111110001111234568899999999999999886 5
Q ss_pred CCEEEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHC-----CCCEEEEeecccccccCCCCCCCCCCCccCCCCC
Q 010005 85 ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACREC-----KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF 156 (520)
Q Consensus 85 ~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~-----gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p 156 (520)
+|+|||+|+... ...++...+..|+.++.++++++++. ...++++.||..+|+.... +.+|+. +..|
T Consensus 80 ~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~---~~~E~~--~~~p 154 (339)
T d1n7ha_ 80 PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPP---PQSETT--PFHP 154 (339)
T ss_dssp CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCS---SBCTTS--CCCC
T ss_pred cchhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccCCC---CCCCCC--CCCC
Confidence 899999999832 23578889999999999999999864 3457889999888765433 578887 6689
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCC--c---h-HHHHHHhcCCCceEEecCCCcccccccHHHH
Q 010005 157 QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ--L---V-PLLVNLAKPGWTKFIIGSGENMSDFTYVENV 230 (520)
Q Consensus 157 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~--~---~-~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dv 230 (520)
.+.|+.+|..+|+++..++++++++++++||++||||+... . + ..+........+..+.|+|.+.+||+|++|+
T Consensus 155 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~rd~~~v~D~ 234 (339)
T d1n7ha_ 155 RSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDY 234 (339)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCCCCCCcchhhHHHHHHhcCCCCeEEeCCCCccccceeeehH
Confidence 99999999999999999998889999999999999997542 1 2 2223334455566788999999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcc-cCChHHHHHHHHHHHHHHHHhcccccCC
Q 010005 231 AHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFI-KLPTGVVWYIILLVKWIHEKLGLRTYNH 309 (520)
Q Consensus 231 a~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v-~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (520)
|+++..+++ .. .+..++++.+.+.+..++++.+.+.+|...... .+... . ..
T Consensus 235 a~~~~~~~~------~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~----------------~----~r 287 (339)
T d1n7ha_ 235 VEAMWLMLQ------QE-KPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQR----------------Y----FR 287 (339)
T ss_dssp HHHHHHHHT------SS-SCCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGG----------------G----SC
T ss_pred HHHHHHHHh------cC-CCCccccccccccccchhhhhhhhhhhcccCceeeeccC----------------C----CC
Confidence 999999988 22 345678888899999999999999998764321 11100 0 00
Q ss_pred CCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhc
Q 010005 310 SLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (520)
Q Consensus 310 ~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~ 360 (520)
| .. ...+..|++|++++|||+|+++++|||++|++||.+....
T Consensus 288 ~----~~----~~~~~~d~~Kak~~LGw~P~~~le~gi~~ti~~~~~~~~~ 330 (339)
T d1n7ha_ 288 P----AE----VDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELAKR 330 (339)
T ss_dssp S----SC----CCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred C----CC----CCeeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHHhh
Confidence 1 00 0134569999999999999999999999999999987654
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=6.7e-41 Score=344.83 Aligned_cols=317 Identities=15% Similarity=0.125 Sum_probs=234.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCccc---------ccCCCCCCC-CC--CCCCCCCCcEEEEecCCCH
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSL---------QLDPSESNS-LL--PDSLSSGRAEYHQVDVRDI 75 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~---------~l~r~~~~~-~l--~~~~~~~~v~~~~~Dl~d~ 75 (520)
+||||||||+||||++|+++|+++| ++|+++|.-... .+.+..... .+ ......++++++.+|++|.
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g-~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~ 79 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKN-YEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDF 79 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCH
Confidence 4899999999999999999999999 599998842100 000000000 00 0001235789999999999
Q ss_pred HHHHHHHcC--CCEEEEcccCC------CCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEeecccccccCCCCCC--
Q 010005 76 SQIKKVLEG--ASTVFYVDATD------LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTADVVFDGSHDIH-- 144 (520)
Q Consensus 76 ~~l~~~l~~--~D~Vih~aa~~------~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~SS~~vyg~~~~~~~-- 144 (520)
+.+.+++++ +|+|||+||.. .....+..++++|+.||.|++++|++.+++ +++++||+.+|+.......
T Consensus 80 ~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~~~~~~ 159 (393)
T d1i24a_ 80 EFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEG 159 (393)
T ss_dssp HHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBCSS
T ss_pred HHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeeccccccccccccccccc
Confidence 999999985 69999999872 222345678999999999999999999854 6888888888864332110
Q ss_pred -------CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC-------------------Cc
Q 010005 145 -------NGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-------------------QL 198 (520)
Q Consensus 145 -------~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~-------------------~~ 198 (520)
...|+.+.+..|.++|+.+|..+|.++..++++++++++++||+++|||++. .+
T Consensus 160 ~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (393)
T d1i24a_ 160 YITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTA 239 (393)
T ss_dssp EEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCH
T ss_pred cccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCccccccccccccccccccccccc
Confidence 1112234467889999999999999999999889999999999999999753 24
Q ss_pred hHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEE-eCCCCcCHHHHHHHHHHHcCC-
Q 010005 199 VPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFI-TNLEPIKFWDFLSIILEGLGY- 276 (520)
Q Consensus 199 ~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni-~~~~~~t~~el~~~i~~~~g~- 276 (520)
++.++..+..|+++.++|+|.+.|||+||+|+++++..+++ .....++.+.+ ++++.+++.|+++.+.+..+.
T Consensus 240 i~~~~~~~~~~~~~~i~g~~~~~rd~v~v~D~~~a~~~~~~-----~~~~~g~~~~~~~~~~~~si~el~~~i~~~~~~~ 314 (393)
T d1i24a_ 240 LNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIA-----NPAKAGEFRVFNQFTEQFSVNELASLVTKAGSKL 314 (393)
T ss_dssp HHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHH-----SCCCTTCEEEEEECSEEEEHHHHHHHHHHHHHTT
T ss_pred hhhhhHHhhcCCeeEEeeecccccccccccchHHHHHHHHH-----hhcccceeeeecCCCCeeEHHHHHHHHHHHHHhh
Confidence 67788888899999999999999999999999999999998 34444443332 345779999999999887643
Q ss_pred --CCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 010005 277 --QRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354 (520)
Q Consensus 277 --~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~ 354 (520)
+......+ .+.. + ........|++|+++ |||+|+++++++++++++|+
T Consensus 315 ~~~~~~~~~~------------------------~~~~-~----~~~~~~~~d~~k~~~-LGw~P~~~~~~~i~~~~~~~ 364 (393)
T d1i24a_ 315 GLDVKKMTVP------------------------NPRV-E----AEEHYYNAKHTKLME-LGLEPHYLSDSLLDSLLNFA 364 (393)
T ss_dssp TCCCCEEEEC------------------------CSSC-S----CSSCCCCBCCCHHHH-TTCCCCCCCHHHHHHHHHHH
T ss_pred CCCcceeecc------------------------CCCC-C----CCccEecCCHHHHHH-cCCccccCHHHHHHHHHHHH
Confidence 22222111 0000 0 001234568899986 99999999999999999999
Q ss_pred Hhhhhc
Q 010005 355 SHLARD 360 (520)
Q Consensus 355 ~~~~~~ 360 (520)
+++.+.
T Consensus 365 ~~~k~~ 370 (393)
T d1i24a_ 365 VQFKDR 370 (393)
T ss_dssp HHTGGG
T ss_pred HHHHHh
Confidence 887653
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=100.00 E-value=3e-41 Score=339.04 Aligned_cols=306 Identities=21% Similarity=0.250 Sum_probs=236.7
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC--CCE
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--AST 87 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~--~D~ 87 (520)
|||||||+||||+||++.|+++| ++|+++|. +.+......+......++++++.+|++|.+.+.+++++ +|+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g-~~V~~id~-----~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~ 75 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQG-IDLIVFDN-----LSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDS 75 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-CEEEEEEC-----CCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred EEEEECCCcHHHHHHHHHHHHCc-CEEEEEEC-----CCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCce
Confidence 79999999999999999999999 59999875 22322211121222346789999999999999999986 599
Q ss_pred EEEcccCCC---CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCC-------------CCCCCcc
Q 010005 88 VFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIH-------------NGDETLT 151 (520)
Q Consensus 88 Vih~aa~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~-------------~~~E~~~ 151 (520)
|||+|+... ...++...+++|+.||.||+++|++.+++++|+.||.++++....... +......
T Consensus 76 Vih~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T d1orra_ 76 CFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDES 155 (338)
T ss_dssp EEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTT
T ss_pred EEeecccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccCcccC
Confidence 999999832 334678999999999999999999999887777777766654332111 0011111
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCC-----CchHHHHHHh-----cCCCceEEecCCCcc
Q 010005 152 CCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-----QLVPLLVNLA-----KPGWTKFIIGSGENM 221 (520)
Q Consensus 152 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~-----~~~~~l~~~~-----~~g~~~~i~g~g~~~ 221 (520)
.+..|.+.|+.+|...|.++..+.+.++...+++|++++||+... ..++.++..+ ..++++.++|+|++.
T Consensus 156 ~~~~~~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~ 235 (338)
T d1orra_ 156 TQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQV 235 (338)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESSSCCE
T ss_pred CccccccccccccchhhhhhhhhhhccCcccccccccceeeccccccccccccchhhHHHHHHHhccCCceEEeCCCcee
Confidence 245688899999999999999988888999999999999986543 3455555443 257788999999999
Q ss_pred cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeC--CCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHH
Q 010005 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN--LEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIH 299 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~--~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~ 299 (520)
++|+|++|++++++.+++.. ....+++||+.. ++++++.|+++.+.+..|.+.+....|.
T Consensus 236 r~~~~v~D~~~~~~~~l~~~----~~~~~~~~~i~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~-------------- 297 (338)
T d1orra_ 236 RDVLHAEDMISLYFTALANV----SKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPV-------------- 297 (338)
T ss_dssp EECEEHHHHHHHHHHHHHTH----HHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECC--------------
T ss_pred EeeecccchhhHHHHHHhcc----ccccCccccccccccccccHHHHHHHHHHHHCCCceeEeCCC--------------
Confidence 99999999999999998732 346678999954 4679999999999999998766544431
Q ss_pred HHhcccccCCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Q 010005 300 EKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSH 356 (520)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~ 356 (520)
.+ .. ...+..|++|++++|||+|+++++|+|+++++||+.
T Consensus 298 ---------~~-~~-------~~~~~~d~~k~~~~Lg~~p~~sl~e~i~~ti~W~k~ 337 (338)
T d1orra_ 298 ---------RE-SD-------QRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSS 337 (338)
T ss_dssp ---------CS-SC-------CSEECBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHH
T ss_pred ---------CC-CC-------cCeeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHc
Confidence 11 00 013456999999999999999999999999999986
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=100.00 E-value=2.3e-38 Score=320.83 Aligned_cols=313 Identities=18% Similarity=0.188 Sum_probs=235.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--C
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~ 84 (520)
++||||||||+||||++|++.|+++| ++|+++|+..+. ....+......++++++.+|++|++.+.++++ .
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g-~~V~~~~r~~~~------~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~ 79 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMG-ATVKGYSLTAPT------VPSLFETARVADGMQSEIGDIRDQNKLLESIREFQ 79 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCSS------SSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCc------cHHHHhhhhcccCCeEEEeeccChHhhhhhhhhch
Confidence 46999999999999999999999999 599997654310 01111111123579999999999999999987 4
Q ss_pred CCEEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHH
Q 010005 85 ASTVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (520)
Q Consensus 85 ~D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~ 161 (520)
+|+|+|+|+.. .+..++...+++|+.|+.+++++|++.+.+++++.||.++++.......+.+|+. +..|.++|+
T Consensus 80 ~~~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~p~~~y~ 157 (356)
T d1rkxa_ 80 PEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENE--AMGGYDPYS 157 (356)
T ss_dssp CSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTS--CBCCSSHHH
T ss_pred hhhhhhhhccccccccccCCccccccccccchhhhhhhhcccccccccccccccccccccccccccccc--ccCCCCccc
Confidence 79999999973 2346788899999999999999999987545555555555554555555666666 568899999
Q ss_pred HHHHHHHHHHHHhcC---------CCCceEEEEecCccccCCCC---CchHHHHHHhcCCCceEEecCCCcccccccHHH
Q 010005 162 DLKAQAEALVLFANN---------IDGLLTCALRPSNVFGPGDT---QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVEN 229 (520)
Q Consensus 162 ~sK~~~E~~~~~~~~---------~~gi~~~ilRp~~vyGp~~~---~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~D 229 (520)
.+|...|..+..+.. ++++.++++||+++|||++. .+++.+.+.+..+.+ .+++++.+.++|+|++|
T Consensus 158 ~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~v~D 236 (356)
T d1rkxa_ 158 NSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQP-VIIRNPHAIRPWQHVLE 236 (356)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCC-EECSCTTCEECCEETHH
T ss_pred cccccchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcchhhHHHHHHHHHHhCCCc-eEEeecccccccccccc
Confidence 999999988876543 35788999999999999873 567778888877776 57889999999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCceEEE--eCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhccccc
Q 010005 230 VAHAHVCAAEALDSRMVSVAGMAFFI--TNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTY 307 (520)
Q Consensus 230 va~ai~~~~~~~~~~~~~~~g~~yni--~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~ 307 (520)
+++|+..+++..... ....+...+. +..+.+++.++++.+.+.++........+ .
T Consensus 237 ~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~--------------------- 293 (356)
T d1rkxa_ 237 PLSGYLLLAQKLYTD-GAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDG-N--------------------- 293 (356)
T ss_dssp HHHHHHHHHHHHHHT-CGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------------------------
T ss_pred ccchhhhhhhhhccc-ccccccccccccccccccccchhhhhhHHHhCCCccEEEcC-C---------------------
Confidence 999999988754322 1122233333 34567999999999999998765432211 0
Q ss_pred CCCCchHHHHHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHHHhhhhc
Q 010005 308 NHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (520)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~~~~~ 360 (520)
..+. -...+..|++|++++|||+|+++++|||++|++||++....
T Consensus 294 ----~~~~----~~~~~~~d~skak~~LGw~P~~~l~egi~~ti~wyk~~~~~ 338 (356)
T d1rkxa_ 294 ----AHPH----EAHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWLSG 338 (356)
T ss_dssp ------------CCCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred ----CCCC----CcCeeeEcHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHHcC
Confidence 0000 01245679999999999999999999999999999987654
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=100.00 E-value=7.7e-37 Score=308.59 Aligned_cols=298 Identities=15% Similarity=0.072 Sum_probs=219.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCC----CCCCCCCcEEEEecCCCHHHHHHHH
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLP----DSLSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~----~~~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
+++||||||+||||++|++.|+++| ++|++ +.|+..+. .+. ..........+.+|++|.+++.+++
T Consensus 11 gk~VlVTG~sGfIGs~l~~~Ll~~G-~~V~~--------~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 81 (342)
T d1y1pa1 11 GSLVLVTGANGFVASHVVEQLLEHG-YKVRG--------TARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVI 81 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT-CEEEE--------EESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTT
T ss_pred cCEEEEECCCCHHHHHHHHHHHHCc-CEEEE--------EeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhc
Confidence 6899999999999999999999999 69998 44432210 000 0111223456789999999999999
Q ss_pred cCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHC-CCCEEEEeecccccccCCCCCC--CCCCCcc--------
Q 010005 83 EGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGSHDIH--NGDETLT-------- 151 (520)
Q Consensus 83 ~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-gvkr~V~~SS~~vyg~~~~~~~--~~~E~~~-------- 151 (520)
.++|+|+|+++......++...++.|+.||.|++++|++. ++++|||+||+.+++....... ..+|+.+
T Consensus 82 ~~~~~v~~~a~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 161 (342)
T d1y1pa1 82 KGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKA 161 (342)
T ss_dssp TTCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHH
T ss_pred ccchhhhhhcccccccccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCcccccccccccccccc
Confidence 9999999999996666778889999999999999999997 5999999999876643332111 1222211
Q ss_pred ------CCCCCCChHHHHHHHHHHHHHHhcCCC--CceEEEEecCccccCCC-----CCchHHHHHHhcCCCceEEecCC
Q 010005 152 ------CCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGD-----TQLVPLLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 152 ------~~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~vyGp~~-----~~~~~~l~~~~~~g~~~~i~g~g 218 (520)
.+..|.++|+.+|..+|++++.+.+++ +++++++||+.+|||.. ...+..++..+..|+.... ..+
T Consensus 162 ~~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~ 240 (342)
T d1y1pa1 162 KTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPA-LAL 240 (342)
T ss_dssp HHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHH-HHT
T ss_pred ccccccCCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCccccccchHHHHHHHHcCCcCcc-cCC
Confidence 145677889999999999998886543 57889999999999853 2456777788888776433 346
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHH
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWI 298 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~ 298 (520)
++.++|+||+|+|++++.+++ .+.. ++.||++++++++++|+++.+.+.++.......+|.
T Consensus 241 ~~~~~~v~v~Dva~~~i~~l~-----~~~~-~g~~~~~~~~~~t~~eia~~i~k~~p~~~~~~~~~~------------- 301 (342)
T d1y1pa1 241 MPPQYYVSAVDIGLLHLGCLV-----LPQI-ERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPD------------- 301 (342)
T ss_dssp CCSEEEEEHHHHHHHHHHHHH-----CTTC-CSCEEEECCEEECHHHHHHHHHHHCTTSCCCCCCCC-------------
T ss_pred ccceeeeeHHHHHHHHHHhhc-----Cccc-cceEEEEcCCceEHHHHHHHHHHHcCCCcCCccCCc-------------
Confidence 677899999999999999988 3344 445778888999999999999998854322222220
Q ss_pred HHHhcccccCCCCchHHHHHHhccceEe---chHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 010005 299 HEKLGLRTYNHSLSACYIVQLASRTRTF---DCIAAQKHIGYSPVVSLEEGVSSTIQSF 354 (520)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~ka~~~LG~~p~~sleegi~~~~~~~ 354 (520)
..+. ...+ ...+..+.|||.|.+++||+|+++++.+
T Consensus 302 ---------~~~~-----------~~~~~~~~s~~~~k~lg~~~~~~lee~i~d~I~s~ 340 (342)
T d1y1pa1 302 ---------QGQD-----------LSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSE 340 (342)
T ss_dssp ---------CCCC-----------CCEECCHHHHHHHHHTTCCSCCCHHHHHHHHHCCS
T ss_pred ---------cCcc-----------cccccchHHHHHHHHcCCCCCcCHHHHHHHHHHhC
Confidence 0000 1112 2344445699999889999999998754
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.4e-36 Score=295.87 Aligned_cols=291 Identities=18% Similarity=0.119 Sum_probs=199.7
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHH-HHHHH-----cC
Q 010005 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ-IKKVL-----EG 84 (520)
Q Consensus 11 ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~-l~~~l-----~~ 84 (520)
||||||+||||++|++.|+++|+++|+++|.. .+......+ .+....|..+.+. ..... ..
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~-----~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNL-----KDGTKFVNL--------VDLNIADYMDKEDFLIQIMAGEEFGD 68 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECC-----SSGGGGHHH--------HTSCCSEEEEHHHHHHHHHTTCCCSS
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECC-----CCcchhhcc--------cccchhhhccchHHHHHHhhhhcccc
Confidence 89999999999999999999996579998742 221110000 0111122222222 22222 35
Q ss_pred CCEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHH
Q 010005 85 ASTVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (520)
Q Consensus 85 ~D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~s 163 (520)
+++|+|+|+. .....+.....+.|+.++.++++++++.+++ +|+.||..+|+..... ..+|+. +..|.+.|+.+
T Consensus 69 ~~~i~~~aa~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~-~v~~ss~~~~~~~~~~--~~~~~~--~~~~~~~Y~~~ 143 (307)
T d1eq2a_ 69 VEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIP-FLYASSAATYGGRTSD--FIESRE--YEKPLNVYGYS 143 (307)
T ss_dssp CCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTCC-EEEEEEGGGGTTCCSC--BCSSGG--GCCCSSHHHHH
T ss_pred hhhhhhhccccccccccccccccccccccccccccccccccc-cccccccccccccccc--cccccc--ccccccccccc
Confidence 8999999997 4455677788899999999999999999985 6777777777543322 333443 55788999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEecCccccCCCC------CchHHHHHHhcCCCceE-EecCCCcccccccHHHHHHHHHH
Q 010005 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKF-IIGSGENMSDFTYVENVAHAHVC 236 (520)
Q Consensus 164 K~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~------~~~~~l~~~~~~g~~~~-i~g~g~~~~~~i~v~Dva~ai~~ 236 (520)
|..+|.++..++.+++++++++||+++|||++. .++..+.+.+..++... ..|+++..++|+|++|++.++..
T Consensus 144 K~~~e~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~d~~~~~~~ 223 (307)
T d1eq2a_ 144 KFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLW 223 (307)
T ss_dssp HHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHH
T ss_pred cchhhhhccccccccccccccccceeEeeccccccccccccccccccccccccceeeecCccceeeeeeecccHHHHHHH
Confidence 999999999999999999999999999999764 45666777777776543 35788889999999999999998
Q ss_pred HHHhhhcccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHH
Q 010005 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYI 316 (520)
Q Consensus 237 ~~~~~~~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (520)
+++ ....+.||++++++.+++|+++.+.+..+.... ..+|.. ...
T Consensus 224 ~~~-------~~~~~~~~~~~~~~~si~~i~~~i~~~~~~~~i-~~~~~~---------------------------~~~ 268 (307)
T d1eq2a_ 224 FLE-------NGVSGIFNLGTGRAESFQAVADATLAYHKKGQI-EYIPFP---------------------------DKL 268 (307)
T ss_dssp HHH-------HCCCEEEEESCSCCBCHHHHHHHC----------------------------------------------
T ss_pred Hhh-------hccccccccccccchhHHHHHHHHHHhcCCCCe-eEeeCC---------------------------ccC
Confidence 888 234569999999999999999999876553211 111100 000
Q ss_pred HHHhccceEechHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 010005 317 VQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354 (520)
Q Consensus 317 ~~~~~~~~~~d~~ka~~~LG~~p~~sleegi~~~~~~~ 354 (520)
..........|++|+++.+||+|+++++|||+++++|+
T Consensus 269 ~~~~~~~~~~d~~k~~~~~~~~p~~sl~egi~~~i~w~ 306 (307)
T d1eq2a_ 269 KGRYQAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAWL 306 (307)
T ss_dssp ---CCCSCCBCCHHHHHTTCCCCCCCHHHHHHHHHHHT
T ss_pred CCCCceeeecCHHHHHHHHCCCCCCCHHHHHHHHHHhC
Confidence 00011123459999999999999999999999999996
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=100.00 E-value=1.5e-34 Score=282.43 Aligned_cols=274 Identities=16% Similarity=0.144 Sum_probs=221.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--CCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~~D 86 (520)
|||||||||||||++|+++|.++| ++|+++| |.. +|++|.+++.++++ ++|
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g-~~Vi~~~--------r~~------------------~D~~d~~~~~~~l~~~~~d 54 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKN-VEVIPTD--------VQD------------------LDITNVLAVNKFFNEKKPN 54 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSS-EEEEEEC--------TTT------------------CCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEEEee--------chh------------------ccCCCHHHHHHHHHHcCCC
Confidence 789999999999999999999999 5999944 331 48999999999997 579
Q ss_pred EEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHH
Q 010005 87 TVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (520)
Q Consensus 87 ~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~s 163 (520)
+|||+|+.. .+...+......|+..+.++.++++..+. +++++||..+|+... ..+.+|++ +..|.+.|+.+
T Consensus 55 ~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~~~ss~~v~~~~~--~~~~~e~~--~~~~~~~~~~~ 129 (281)
T d1vl0a_ 55 VVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA-EIVQISTDYVFDGEA--KEPITEFD--EVNPQSAYGKT 129 (281)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCSCC--SSCBCTTS--CCCCCSHHHHH
T ss_pred EEEeeccccccccccccchhhcccccccccccccccccccc-cccccccceeeeccc--cccccccc--cccchhhhhhh
Confidence 999999872 33456678889999999999999988875 788999999986443 34667776 56889999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhc
Q 010005 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (520)
Q Consensus 164 K~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~ 243 (520)
|...|+++..+ +.+.+++||+.+|||+. .....++..+..+.++.+.+ ++.++|+|++|+++++..+++.
T Consensus 130 k~~~e~~~~~~----~~~~~i~R~~~vyG~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~~~~~~~~~~~--- 199 (281)
T d1vl0a_ 130 KLEGENFVKAL----NPKYYIVRTAWLYGDGN-NFVKTMINLGKTHDELKVVH--DQVGTPTSTVDLARVVLKVIDE--- 199 (281)
T ss_dssp HHHHHHHHHHH----CSSEEEEEECSEESSSS-CHHHHHHHHHHHCSEEEEES--SCEECCEEHHHHHHHHHHHHHH---
T ss_pred hhHHHHHHHHh----CCCccccceeEEeCCCc-ccccchhhhhccCCceeecC--Cceeccchhhhhhhhhhhhhhh---
Confidence 99999999874 66899999999999986 45667777777777766665 5889999999999999999982
Q ss_pred ccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccc
Q 010005 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRT 323 (520)
Q Consensus 244 ~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (520)
. ..++||+++++.+|+.|+++.+++.+|.+....++|... .+ .+..+| .+
T Consensus 200 ---~-~~g~~~~~~~~~~s~~e~~~~i~~~~g~~~~i~~i~~~~--------------~~-----~~a~rp-------~~ 249 (281)
T d1vl0a_ 200 ---K-NYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEE--------------FP-----RPAKRP-------KY 249 (281)
T ss_dssp ---T-CCEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTT--------------SC-----CSSCCC-------SB
T ss_pred ---c-ccCceeEeCCCccchHHHHHHHHHHhCCCceEEeccHHH--------------cC-----CcCCCc-------cc
Confidence 2 235999999999999999999999999986555444110 00 000000 12
Q ss_pred eEechHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 010005 324 RTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFS 355 (520)
Q Consensus 324 ~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~ 355 (520)
..+|++|+++.+||+|+ +++||+++++++++
T Consensus 250 ~~ld~~k~~~~~g~~~~-~~~~~l~~~l~~l~ 280 (281)
T d1vl0a_ 250 SVLRNYMLELTTGDITR-EWKESLKEYIDLLQ 280 (281)
T ss_dssp CCBCCHHHHHTTCCCCC-BHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHhCCCCC-CHHHHHHHHHHHhc
Confidence 35799999999999998 99999999999875
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=100.00 E-value=7.7e-33 Score=272.04 Aligned_cols=290 Identities=14% Similarity=0.088 Sum_probs=213.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--CCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~~D 86 (520)
||||||||+||||++|++.|.++|+ .|.+ | .++.. +.+|++|.+.+.++++ ++|
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~-~v~~-~-------~~~~~---------------~~~Dl~~~~~~~~~i~~~~~D 56 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGN-LIAL-D-------VHSKE---------------FCGDFSNPKGVAETVRKLRPD 56 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSE-EEEE-C-------TTCSS---------------SCCCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-EEEE-E-------CCCcc---------------ccCcCCCHHHHHHHHHHcCCC
Confidence 7899999999999999999999983 5544 2 22211 2379999999999997 479
Q ss_pred EEEEcccCC---CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHH
Q 010005 87 TVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (520)
Q Consensus 87 ~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~s 163 (520)
+|||+||.. .+..++...++.|+.++.+++++|++.++ +++++||..+|+.. ...+.+|+. +..|.+.|+.+
T Consensus 57 ~Vih~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~~ss~~~~~~~--~~~~~~E~~--~~~p~~~y~~~ 131 (298)
T d1n2sa_ 57 VIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGA-WVVHYSTDYVFPGT--GDIPWQETD--ATSPLNVYGKT 131 (298)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC-EEEEEEEGGGSCCC--TTCCBCTTS--CCCCSSHHHHH
T ss_pred EEEEecccccccccccCccccccccccccccchhhhhcccc-ccccccccccccCC--CCCCCcccc--ccCCCchHhhh
Confidence 999999972 35678889999999999999999999986 78999999998643 334678877 56899999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhc
Q 010005 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (520)
Q Consensus 164 K~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~ 243 (520)
|..+|..+..+.. ...++|++..|+.........+...+..+.++... +.+.++++|++|+++++..+++....
T Consensus 132 k~~~e~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~~~i~~~~~ 205 (298)
T d1n2sa_ 132 KLAGEKALQDNCP----KHLIFRTSWVYAGKGNNFAKTMLRLAKERQTLSVI--NDQYGAPTGAELLADCTAHAIRVALN 205 (298)
T ss_dssp HHHHHHHHHHHCS----SEEEEEECSEECSSSCCHHHHHHHHHHHCSEEEEE--CSCEECCEEHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHhhhc----ccccccccceeeccCCccchhhhhhhcccceeecc--cceeecccccchHHHHHHHHHhhhhc
Confidence 9999999988754 24566666666554445555566666666665444 45788999999999999988875432
Q ss_pred ccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccc
Q 010005 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRT 323 (520)
Q Consensus 244 ~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (520)
....+++||+++++.++..|+++.+.+..+.......++... . .....+..+.-+| .+
T Consensus 206 --~~~~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------------~-i~~~~~~~~a~RP-------~~ 263 (298)
T d1n2sa_ 206 --KPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELN------------A-VPTSAYPTPASRP-------GN 263 (298)
T ss_dssp --CGGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEE------------E-ECSTTSCCSSCCC-------SB
T ss_pred --cccccccccccCCCceecHHHHHHHHhhhhccCcccccccee------------e-eehhhcCccCCCc-------cc
Confidence 334568999999999999999999887764432222211000 0 0000000000000 13
Q ss_pred eEechHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Q 010005 324 RTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSH 356 (520)
Q Consensus 324 ~~~d~~ka~~~LG~~p~~sleegi~~~~~~~~~ 356 (520)
..+|++|+++.+||+|+ +++|||+++++++..
T Consensus 264 ~~ld~~K~~~~~~~~~~-~~~~gl~~~i~~~~~ 295 (298)
T d1n2sa_ 264 SRLNTEKFQRNFDLILP-QWELGVKRMLTEMFT 295 (298)
T ss_dssp CCBCCHHHHHHHTCCCC-BHHHHHHHHHHHHHS
T ss_pred cccCHHHHHHHHCCCCC-cHHHHHHHHHHHHHh
Confidence 35799999999999997 999999999998865
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.1e-27 Score=221.40 Aligned_cols=203 Identities=18% Similarity=0.195 Sum_probs=161.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
|.|+||+||||||+||++++++|+++| ++|++ +.|++.+ +. .....+++++.+|++|.+++.++++++
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g-~~V~~--------~~R~~~~--~~-~~~~~~~~~~~gD~~d~~~l~~al~~~ 68 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAG-YEVTV--------LVRDSSR--LP-SEGPRPAHVVVGDVLQAADVDKTVAGQ 68 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTT-CEEEE--------EESCGGG--SC-SSSCCCSEEEESCTTSHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCc-CEEEE--------EEcChhh--cc-cccccccccccccccchhhHHHHhcCC
Confidence 357899999999999999999999999 59999 4554442 11 123457899999999999999999999
Q ss_pred CEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHH
Q 010005 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKA 165 (520)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~ 165 (520)
|+|||+++..... ...+.+..+++|++++++++|++|||++||..+|++... .......|...|.
T Consensus 69 d~vi~~~g~~~~~----~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss~~~~~~~~~-----------~~~~~~~~~~~~~ 133 (205)
T d1hdoa_ 69 DAVIVLLGTRNDL----SPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTK-----------VPPRLQAVTDDHI 133 (205)
T ss_dssp SEEEECCCCTTCC----SCCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTC-----------SCGGGHHHHHHHH
T ss_pred CEEEEEeccCCch----hhhhhhHHHHHHHHHHHHhcCCCeEEEEeeeeccCCCcc-----------ccccccccchHHH
Confidence 9999999873322 223577899999999999999999999999998743211 1123457889999
Q ss_pred HHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhccc
Q 010005 166 QAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRM 245 (520)
Q Consensus 166 ~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~ 245 (520)
.+|++++. .|++++++||+.+++... .+. ..+..++.....+++++|+|++++.+++ .
T Consensus 134 ~~e~~l~~----~~~~~tiirp~~~~~~~~------------~~~-~~~~~~~~~~~~~i~~~DvA~~~~~~l~-----~ 191 (205)
T d1hdoa_ 134 RMHKVLRE----SGLKYVAVMPPHIGDQPL------------TGA-YTVTLDGRGPSRVISKHDLGHFMLRCLT-----T 191 (205)
T ss_dssp HHHHHHHH----TCSEEEEECCSEEECCCC------------CSC-CEEESSSCSSCSEEEHHHHHHHHHHTTS-----C
T ss_pred HHHHHHHh----cCCceEEEecceecCCCC------------ccc-EEEeeCCCCCCCcCCHHHHHHHHHHHhC-----C
Confidence 99998876 689999999999986432 223 2567778888899999999999998887 4
Q ss_pred ccCCCceEEEeC
Q 010005 246 VSVAGMAFFITN 257 (520)
Q Consensus 246 ~~~~g~~yni~~ 257 (520)
+...|+.+.++.
T Consensus 192 ~~~~g~~~~~s~ 203 (205)
T d1hdoa_ 192 DEYDGHSTYPSH 203 (205)
T ss_dssp STTTTCEEEEEC
T ss_pred CCCCCEEEecCC
Confidence 566788888765
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.95 E-value=9.8e-29 Score=243.86 Aligned_cols=244 Identities=13% Similarity=0.059 Sum_probs=190.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCC-----CCCCCCCCcEEEEecCCCHHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLL-----PDSLSSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l-----~~~~~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
+++||||||||||||++++++|+++| ++|++ +.|++..... ...+...+++++.+|+.|.+.+.+.
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G-~~V~~--------~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~ 72 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLG-HPTYV--------LFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDA 72 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTT-CCEEE--------ECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCC-CEEEE--------EECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhh
Confidence 46789999999999999999999999 59999 4554332110 0112345789999999999999999
Q ss_pred HcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHH
Q 010005 82 LEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (520)
Q Consensus 82 l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~ 161 (520)
++++++++|+++.... ..|..++.+++++|++.+..++++.||.+++.. .+.. +..|...|.
T Consensus 73 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~a~~~~~~~~v~~Ss~g~~~~--------~~~~--~~~~~~~~~ 134 (312)
T d1qyda_ 73 LKQVDVVISALAGGVL--------SHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPD--------IMEH--ALQPGSITF 134 (312)
T ss_dssp HTTCSEEEECCCCSSS--------STTTTTHHHHHHHHHHSCCCSEEECSCCSSCTT--------SCCC--CCSSTTHHH
T ss_pred ccCcchhhhhhhhccc--------ccchhhhhHHHHHHHHhcCCcEEEEeeccccCC--------Cccc--ccchhhhhh
Confidence 9999999999976322 346677889999999998778888888766521 1222 456778888
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhh
Q 010005 162 DLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEAL 241 (520)
Q Consensus 162 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~ 241 (520)
..|..+|++... .+++++++||+.+||+......+.+......++.+.++++|++.++|+|++|+|++++.+++
T Consensus 135 ~~~~~~~~~~~~----~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~l~-- 208 (312)
T d1qyda_ 135 IDKRKVRRAIEA----ASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSID-- 208 (312)
T ss_dssp HHHHHHHHHHHH----TTCCBCEEECCEEHHHHTTTSSCTTCCSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTT--
T ss_pred HHHHHHHHhhcc----cccceEEeccceeecCCccchhhHHHHhhhcccccccccccccccceeeHHHHHHHHHHHhc--
Confidence 888888877655 68899999999999976654443333444566777889999999999999999999999987
Q ss_pred hcccccCCCce-EEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChH
Q 010005 242 DSRMVSVAGMA-FFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTG 286 (520)
Q Consensus 242 ~~~~~~~~g~~-yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~ 286 (520)
.+...++. |++++++.+|++|+++.+.+.+|.+.+.+.+|..
T Consensus 209 ---~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~i~~~ 251 (312)
T d1qyda_ 209 ---DPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYISSQ 251 (312)
T ss_dssp ---CGGGSSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBCSH
T ss_pred ---CccccCceEEEeCCCcCCCHHHHHHHHHHHHCCCCeEEECCHH
Confidence 34555665 5566667899999999999999999888888854
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.7e-27 Score=226.43 Aligned_cols=209 Identities=13% Similarity=0.049 Sum_probs=160.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCc-EEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~-~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
|++|+|||||||||||++++++|+++|.+ +|+++ .|++.... ......++...+|+.+.+++.+++++
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~--------~R~~~~~~---~~~~~~i~~~~~D~~~~~~~~~~~~~ 80 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLI--------GRRKLTFD---EEAYKNVNQEVVDFEKLDDYASAFQG 80 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEE--------ESSCCCCC---SGGGGGCEEEECCGGGGGGGGGGGSS
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEE--------ecChhhhc---ccccceeeeeeecccccccccccccc
Confidence 45689999999999999999999999942 79994 44433111 11234678889999999999999999
Q ss_pred CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHH
Q 010005 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (520)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK 164 (520)
+|+|||+++......+...+.++|+.++.+++++|++.++++|||+||..++. .+.+.|+.+|
T Consensus 81 ~d~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~~~~-----------------~~~~~Y~~~K 143 (232)
T d2bkaa1 81 HDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADK-----------------SSNFLYLQVK 143 (232)
T ss_dssp CSEEEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCT-----------------TCSSHHHHHH
T ss_pred cccccccccccccccchhhhhhhcccccceeeecccccCccccccCCcccccc-----------------CccchhHHHH
Confidence 99999999875444567788999999999999999999999999999998752 2346899999
Q ss_pred HHHHHHHHHhcCCCCc-eEEEEecCccccCCCCC-chHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhh
Q 010005 165 AQAEALVLFANNIDGL-LTCALRPSNVFGPGDTQ-LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242 (520)
Q Consensus 165 ~~~E~~~~~~~~~~gi-~~~ilRp~~vyGp~~~~-~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~ 242 (520)
..+|+.+.++ ++ +++|+||+.+||+++.. ....+....... +..+......+|++|+|++++.++.
T Consensus 144 ~~~E~~l~~~----~~~~~~IlRP~~i~G~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~I~~~dvA~a~i~~~~--- 211 (232)
T d2bkaa1 144 GEVEAKVEEL----KFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGS-----LPDSWASGHSVPVVTVVRAMLNNVV--- 211 (232)
T ss_dssp HHHHHHHHTT----CCSEEEEEECCEEECTTGGGSHHHHHHHHHHCS-----CCTTGGGGTEEEHHHHHHHHHHHHT---
T ss_pred HHhhhccccc----cccceEEecCceeecCCCcCcHHHHHHHHHhhc-----cCCcccCCCeEEHHHHHHHHHHHHh---
Confidence 9999998874 44 48999999999997653 333344443332 2233344567999999999998876
Q ss_pred cccccCCCceEEEeC
Q 010005 243 SRMVSVAGMAFFITN 257 (520)
Q Consensus 243 ~~~~~~~g~~yni~~ 257 (520)
....++.+.+.+
T Consensus 212 ---~~~~~~~~i~~~ 223 (232)
T d2bkaa1 212 ---RPRDKQMELLEN 223 (232)
T ss_dssp ---SCCCSSEEEEEH
T ss_pred ---cCccCCeEEEcH
Confidence 344556777764
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.95 E-value=2.9e-28 Score=239.02 Aligned_cols=239 Identities=13% Similarity=0.146 Sum_probs=182.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCC------CCCCCCCCcEEEEecCCCHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLL------PDSLSSGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l------~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (520)
.+|||||||||||||++++++|+++| ++|+++++ .+..... ...+...+++++.+|+.+.+.+.+
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G-~~V~~l~R--------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 72 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLG-HPTFLLVR--------ESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVE 72 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECC--------CCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEEC--------CCccccchhHHHHHHhhccCCcEEEEeecccchhhhh
Confidence 46899999999999999999999999 59999554 3321100 011123578999999999999999
Q ss_pred HHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChH
Q 010005 81 VLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLM 160 (520)
Q Consensus 81 ~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y 160 (520)
.+++++.|+|+++. .+..++.+++++++..+++++++.||...+. ++.. ...+...+
T Consensus 73 ~~~~~~~vi~~~~~------------~~~~~~~~~~~a~~~~~~~~~~~~s~~~~~~---------~~~~--~~~~~~~~ 129 (307)
T d1qyca_ 73 AVKNVDVVISTVGS------------LQIESQVNIIKAIKEVGTVKRFFPSEFGNDV---------DNVH--AVEPAKSV 129 (307)
T ss_dssp HHHTCSEEEECCCG------------GGSGGGHHHHHHHHHHCCCSEEECSCCSSCT---------TSCC--CCTTHHHH
T ss_pred hhhhceeeeecccc------------cccchhhHHHHHHHHhccccceeeecccccc---------cccc--cccccccc
Confidence 99999999999864 2345667889999999998999998865431 1211 22344567
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHh
Q 010005 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEA 240 (520)
Q Consensus 161 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~ 240 (520)
...+...|.++.. .+++++++||+.+||++.+.+.. +......+....+++++++.++|+|++|+|++++.+++
T Consensus 130 ~~~~~~~~~~~~~----~~~~~~i~r~~~v~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~- 203 (307)
T d1qyca_ 130 FEVKAKVRRAIEA----EGIPYTYVSSNCFAGYFLRSLAQ-AGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVD- 203 (307)
T ss_dssp HHHHHHHHHHHHH----HTCCBEEEECCEEHHHHTTTTTC-TTCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSS-
T ss_pred ccccccccchhhc----cCCCceecccceecCCCccchhh-hhhhhhhcccceeeecccccccCCcHHHHHHHHHHHhc-
Confidence 7777777777766 58899999999999987654322 23334566677889999999999999999999998887
Q ss_pred hhcccccCCCce-EEEeCCCCcCHHHHHHHHHHHcCCCCCcccCChHH
Q 010005 241 LDSRMVSVAGMA-FFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGV 287 (520)
Q Consensus 241 ~~~~~~~~~g~~-yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~~~ 287 (520)
.+...++. |++++++.+|+.|+++.+.+.+|.+...+.+|...
T Consensus 204 ----~~~~~~~~~~~~~~~~~~s~~ei~~~~~~~~G~~~~~~~~~~~~ 247 (307)
T d1qyca_ 204 ----DPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEE 247 (307)
T ss_dssp ----CGGGTTEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEECHHH
T ss_pred ----ChhhcCceeEEeCCCCccCHHHHHHHHHHHHCCCCcEEECCHHH
Confidence 34455555 55677789999999999999999998777777653
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.92 E-value=3e-25 Score=210.21 Aligned_cols=229 Identities=15% Similarity=0.046 Sum_probs=166.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
.|++||||||+||||+++++.|+++|+ +|++.+ +.|++.+. . ....+++++.+|+.|.+.+.++++++|
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~-~v~v~~------~~R~~~~~--~--~~~~~~~~~~~d~~~~~~~~~~~~~~d 70 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSD-KFVAKG------LVRSAQGK--E--KIGGEADVFIGDITDADSINPAFQGID 70 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTT-TCEEEE------EESCHHHH--H--HTTCCTTEEECCTTSHHHHHHHHTTCS
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-cEEEEE------EcCCHHHH--H--hccCCcEEEEeeeccccccccccccce
Confidence 468999999999999999999999995 433322 45554311 1 112478899999999999999999999
Q ss_pred EEEEcccCCC----------------CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCc
Q 010005 87 TVFYVDATDL----------------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETL 150 (520)
Q Consensus 87 ~Vih~aa~~~----------------~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~ 150 (520)
+|||+|+... ..........+|+.++.++++.+...+.+++.+.|+..++.. ..
T Consensus 71 ~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~----------~~ 140 (252)
T d2q46a1 71 ALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNP----------DH 140 (252)
T ss_dssp EEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCT----------TC
T ss_pred eeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccCCC----------Cc
Confidence 9999998611 123356678899999999999999999999999998877521 11
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHH
Q 010005 151 TCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENV 230 (520)
Q Consensus 151 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dv 230 (520)
+....+...|...+...+.+... .|++++++||+.+|||..... + ....... .......+|+|++|+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ilRp~~v~g~~~~~~-~----~~~~~~~----~~~~~~~~~i~~~Dv 207 (252)
T d2q46a1 141 PLNKLGNGNILVWKRKAEQYLAD----SGTPYTIIRAGGLLDKEGGVR-E----LLVGKDD----ELLQTDTKTVPRADV 207 (252)
T ss_dssp GGGGGGGCCHHHHHHHHHHHHHH----SSSCEEEEEECEEECSCTTSS-C----EEEESTT----GGGGSSCCEEEHHHH
T ss_pred ccccccccchhhhhhhhhhhhhc----ccccceeecceEEECCCcchh-h----hhhccCc----ccccCCCCeEEHHHH
Confidence 11334556777777777666555 689999999999999975321 0 0000000 012344689999999
Q ss_pred HHHHHHHHHhhhcccccCCCceEEEeCCC---CcCHHHHHHHHHHHc
Q 010005 231 AHAHVCAAEALDSRMVSVAGMAFFITNLE---PIKFWDFLSIILEGL 274 (520)
Q Consensus 231 a~ai~~~~~~~~~~~~~~~g~~yni~~~~---~~t~~el~~~i~~~~ 274 (520)
|++++.+++ .+...|++|||+++. ..+++|+.+.+.+..
T Consensus 208 a~a~~~~l~-----~~~~~g~~~~i~~~~~~~~~~~~~~~~lf~~i~ 249 (252)
T d2q46a1 208 AEVCIQALL-----FEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVT 249 (252)
T ss_dssp HHHHHHHTT-----CGGGTTEEEEEEECCTTTSCCCCCHHHHHTTCC
T ss_pred HHHHHHHhC-----CccccCcEEEEeeCCCCCChhHHHHHHHHHHHH
Confidence 999999887 466788999998743 466777777665543
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.91 E-value=1.5e-24 Score=202.78 Aligned_cols=186 Identities=17% Similarity=0.104 Sum_probs=134.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCc-EEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc-CC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-GA 85 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~-~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-~~ 85 (520)
+|||||||||||||++++++|+++|++ +|++ +.|++.. ..+. +..+..|..++.+.+. ++
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~--------~~r~~~~-------~~~~---~~~~~~d~~~~~~~~~~~~ 63 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIA--------PARKALA-------EHPR---LDNPVGPLAELLPQLDGSI 63 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEEC--------CBSSCCC-------CCTT---EECCBSCHHHHGGGCCSCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEE--------EeCCchh-------hccc---ccccccchhhhhhccccch
Confidence 489999999999999999999999964 4665 4554331 1122 3445555554444443 58
Q ss_pred CEEEEcccCC-CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHH
Q 010005 86 STVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (520)
Q Consensus 86 D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK 164 (520)
|+|||++|.. ....+...+.+.|+.++.+++++|++.++++|+|+||..+++ .+.+.|+.+|
T Consensus 64 d~vi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i~~Ss~~~~~-----------------~~~~~y~~~K 126 (212)
T d2a35a1 64 DTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADA-----------------KSSIFYNRVK 126 (212)
T ss_dssp SEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCT-----------------TCSSHHHHHH
T ss_pred heeeeeeeeeccccccccccccchhhhhhhccccccccccccccccccccccc-----------------ccccchhHHH
Confidence 9999999872 223456788999999999999999999999999999998762 2346899999
Q ss_pred HHHHHHHHHhcCCCCc-eEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHH
Q 010005 165 AQAEALVLFANNIDGL-LTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 165 ~~~E~~~~~~~~~~gi-~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~ 239 (520)
..+|+.+++. ++ +++++||+.+||+.+...+...+ ..... ... ...++.||++|+|++++.+++
T Consensus 127 ~~~E~~l~~~----~~~~~~I~Rp~~v~G~~~~~~~~~~~---~~~~~-~~~---~~~~~~i~v~DvA~ai~~~~~ 191 (212)
T d2a35a1 127 GELEQALQEQ----GWPQLTIARPSLLFGPREEFRLAEIL---AAPIA-RIL---PGKYHGIEACDLARALWRLAL 191 (212)
T ss_dssp HHHHHHHTTS----CCSEEEEEECCSEESTTSCEEGGGGT---TCCCC--------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhcccc----ccccceeeCCcceeCCcccccHHHHH---HHHHh-hcc---CCCCcEEEHHHHHHHHHHHHc
Confidence 9999988763 44 59999999999998764322111 11111 111 123567999999999999887
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.91 E-value=8.4e-24 Score=212.82 Aligned_cols=240 Identities=15% Similarity=0.015 Sum_probs=174.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCH-HHHHHHHcCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI-SQIKKVLEGA 85 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~-~~l~~~l~~~ 85 (520)
+.|+|+|||||||||++++++|+++| ++|++ +.|++.+.........++++.+++|+.|. +.+..++.++
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G-~~V~~--------l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~ 72 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVG-HHVRA--------QVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGA 72 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTT-CCEEE--------EESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTC
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCC-CeEEE--------EECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCC
Confidence 46899999999999999999999999 59999 56654422111222346899999999985 4577888999
Q ss_pred CEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHH
Q 010005 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKA 165 (520)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~ 165 (520)
|++++..... ...|+..+.+++++|++.|++|+++.||...+... ...+..+|..+|.
T Consensus 73 ~~~~~~~~~~---------~~~~~~~~~~~~~aa~~agv~~~v~~Ss~~~~~~~-------------~~~~~~~~~~~k~ 130 (350)
T d1xgka_ 73 HLAFINTTSQ---------AGDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLY-------------GPWPAVPMWAPKF 130 (350)
T ss_dssp SEEEECCCST---------TSCHHHHHHHHHHHHHHHSCCSEEEEEECCCGGGT-------------SSCCCCTTTHHHH
T ss_pred ceEEeecccc---------cchhhhhhhHHHHHHHHhCCCceEEEeeccccccC-------------CcccchhhhhhHH
Confidence 9998776432 23467788999999999999889999887654211 2234566778899
Q ss_pred HHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHH-HhcCCC-ceEEecCCCcccccccH-HHHHHHHHHHHHhhh
Q 010005 166 QAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVN-LAKPGW-TKFIIGSGENMSDFTYV-ENVAHAHVCAAEALD 242 (520)
Q Consensus 166 ~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~-~~~~g~-~~~i~g~g~~~~~~i~v-~Dva~ai~~~~~~~~ 242 (520)
..|+++.. .+++++++|++.+++.......+.+.. ....+. ....+.+++...+++++ +|+++++..+++..
T Consensus 131 ~~~~~~~~----~~~~~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~Dva~~v~~~l~~~- 205 (350)
T d1xgka_ 131 TVENYVRQ----LGLPSTFVYAGIYNNNFTSLPYPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDG- 205 (350)
T ss_dssp HHHHHHHT----SSSCEEEEEECEEGGGCBSSSCSSCBEEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHh----hccCceeeeeceeeccccccccccccccccccccceeeecccCCCcceEEEeHHHHHHHHHHHHhCC-
Confidence 98888776 468899999999887533211111111 122222 23455677888899986 79999999888621
Q ss_pred cccccCCCceEEEeCCCCcCHHHHHHHHHHHcCCCCCcccCCh
Q 010005 243 SRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPT 285 (520)
Q Consensus 243 ~~~~~~~g~~yni~~~~~~t~~el~~~i~~~~g~~~~~v~~p~ 285 (520)
.+...|+.|++++ +.+|+.|+++.+.+.+|.+...+++|.
T Consensus 206 --~~~~~G~~~~~~g-~~~T~~eia~~l~~~~G~~v~~~~vp~ 245 (350)
T d1xgka_ 206 --PQKWNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVPK 245 (350)
T ss_dssp --HHHHTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECSS
T ss_pred --hhhcCCeEEEEeC-CcCCHHHHHHHHHHHHCCcceEEECCH
Confidence 1245688999987 579999999999999999866656653
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.76 E-value=4.7e-18 Score=161.29 Aligned_cols=216 Identities=13% Similarity=0.054 Sum_probs=157.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++|++|||||++-||.++++.|.++| ++|.+.|+. +. .+.+.....+...+.+|++|+++++++++
T Consensus 3 L~gK~~lITGas~GIG~aia~~l~~~G-~~V~~~~r~--------~~--~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 71 (242)
T d1ulsa_ 3 LKDKAVLITGAAHGIGRATLELFAKEG-ARLVACDIE--------EG--PLREAAEAVGAHPVVMDVADPASVERGFAEA 71 (242)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESC--------HH--HHHHHHHTTTCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECC--------HH--HHHHHHHHcCCeEEEEecCCHHHHHHHHHHH
Confidence 357999999999999999999999999 599995543 22 11111223357889999999998887764
Q ss_pred -----CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHHHC----CCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~~~----gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
+.|++||+||. .....+++..+++|+.++.++.+++... +-.+++.+||....
T Consensus 72 ~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~~~----------- 140 (242)
T d1ulsa_ 72 LAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYL----------- 140 (242)
T ss_dssp HHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGG-----------
T ss_pred HHhcCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeecccccc-----------
Confidence 58999999998 2334567889999999999998887543 44567777775432
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (520)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+-.+......+...+......|. .-+
T Consensus 141 -----~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~pl---------~R~ 206 (242)
T d1ulsa_ 141 -----GNLGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKVPEKVREKAIAATPL---------GRA 206 (242)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSSCHHHHHHHHHTCTT---------CSC
T ss_pred -----CCCCCcchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhhcCCHHHHHHHHhcCCC---------CCC
Confidence 122356899999999988776643 368999999999998776554444444444333322 234
Q ss_pred ccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 225 i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
...+|+|.+++.++- +......|+.+.+.++..
T Consensus 207 ~~pedia~~v~fL~S---~~s~~itG~~i~vDGG~t 239 (242)
T d1ulsa_ 207 GKPLEVAYAALFLLS---DESSFITGQVLFVDGGRT 239 (242)
T ss_dssp BCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTTT
T ss_pred CCHHHHHHHHHHHhc---hhhCCCCCcEEEECCCcc
Confidence 558999999998874 113457899999988754
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.76 E-value=6.2e-18 Score=159.93 Aligned_cols=211 Identities=14% Similarity=0.091 Sum_probs=152.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
+-++|++|||||++-||+++++.|.++| ++|.+.|+ +.. ....+..+++|++|+++++++++
T Consensus 4 sl~gK~~lITGas~GIG~aia~~la~~G-a~V~~~~r--------~~~--------~~~~~~~~~~Dv~~~~~v~~~~~~ 66 (237)
T d1uzma1 4 PFVSRSVLVTGGNRGIGLAIAQRLAADG-HKVAVTHR--------GSG--------APKGLFGVEVDVTDSDAVDRAFTA 66 (237)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEES--------SSC--------CCTTSEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEEC--------Ccc--------hhcCceEEEEecCCHHHHHHHHHH
Confidence 3478999999999999999999999999 69999554 332 12356789999999988877764
Q ss_pred ------CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCC
Q 010005 84 ------GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 ------~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
+.|++||+||. ..+..+++..+++|+.++..+.+++ ++.+-.++|++||.....
T Consensus 67 ~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~--------- 137 (237)
T d1uzma1 67 VEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLW--------- 137 (237)
T ss_dssp HHHHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----------
T ss_pred HHHhcCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhcc---------
Confidence 58999999997 2344677889999999998776654 455667999999987642
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
+......|+.+|+..+.+.+.++.+ +|+++.++.||.+..+.....-+...+......| ..-
T Consensus 138 ------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~p---------l~R 202 (237)
T d1uzma1 138 ------GIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRALDERIQQGALQFIP---------AKR 202 (237)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHSCHHHHHHHGGGCT---------TCS
T ss_pred ------CCcccHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhhccCHHHHHHHHhcCC---------CCC
Confidence 1223568999999999887776533 7899999999998754322122222222222221 223
Q ss_pred cccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+...+|+|.++..++- +......|+++.+.++-
T Consensus 203 ~~~pedvA~~v~fL~S---~~s~~itG~~i~vdGG~ 235 (237)
T d1uzma1 203 VGTPAEVAGVVSFLAS---EDASYISGAVIPVDGGM 235 (237)
T ss_dssp CBCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTT
T ss_pred CcCHHHHHHHHHHHhC---chhcCCcCCeEEECCCC
Confidence 5569999999998874 11345789999998763
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=3.8e-18 Score=162.04 Aligned_cols=216 Identities=13% Similarity=0.074 Sum_probs=156.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
++|+++||||++-||+++++.|.++| ++|++.|+. ++. ..+.+.+ ..+...+.+|++|+++++++++
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~G-~~Vv~~~r~--------~~~l~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~ 72 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAARG-AKVIGTATS--------ENGAQAISDYL-GANGKGLMLNVTDPASIESVLEKI 72 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESS--------HHHHHHHHHHH-GGGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCC--------HHHHHHHHHHh-CCCCcEEEEEecCHHHhhhhhhhh
Confidence 57999999999999999999999999 699995543 221 0111111 2356789999999988877765
Q ss_pred -----CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
+.|++||.|+. .....+++..+++|+.++..+.+++. +.+-.++|++||.....
T Consensus 73 ~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~---------- 142 (243)
T d1q7ba_ 73 RAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTM---------- 142 (243)
T ss_dssp HHHTCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH----------
T ss_pred hcccCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcC----------
Confidence 58999999988 23446778899999999999988874 44556899999987652
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (520)
+......|+.||+..+.+.+.++. .+|+++.++.||.+-.+......+..........| ..-+
T Consensus 143 -----~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~p---------l~R~ 208 (243)
T d1q7ba_ 143 -----GNGGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQVP---------AGRL 208 (243)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHTTCT---------TSSC
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechhhhhhhhhHHHHHHhcCC---------CCCC
Confidence 222356899999999998877653 37899999999988654322333333333333222 2235
Q ss_pred ccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 225 i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
...+|+|.++..++. +......|+.+.+.++-
T Consensus 209 ~~pedvA~~v~fL~S---~~s~~itGq~i~vdGG~ 240 (243)
T d1q7ba_ 209 GGAQEIANAVAFLAS---DEAAYITGETLHVNGGM 240 (243)
T ss_dssp BCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTS
T ss_pred CCHHHHHHHHHHHhC---chhcCCcCCeEEECCCe
Confidence 669999999998874 11345789999998864
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.70 E-value=3.9e-17 Score=155.75 Aligned_cols=220 Identities=12% Similarity=0.041 Sum_probs=157.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
++|.+|||||++-||+++++.|.++| ++|.+.|+.... +... ...+.+ ...++..+.+|++|++++.++++
T Consensus 9 enKvalITGas~GIG~a~a~~la~~G-a~V~~~~r~~~~-l~~~--~~~l~~--~g~~~~~~~~Dvt~~~~v~~~~~~~~ 82 (251)
T d2c07a1 9 ENKVALVTGAGRGIGREIAKMLAKSV-SHVICISRTQKS-CDSV--VDEIKS--FGYESSGYAGDVSKKEEISEVINKIL 82 (251)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTS-SEEEEEESSHHH-HHHH--HHHHHT--TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHH-HHHH--HHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999 599996543210 0000 001111 12467889999999998887775
Q ss_pred ----CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCCCC
Q 010005 84 ----GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 ----~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
+.|++||.|+. .....+++..+++|+.++..+.+++. +.+-.++|++||.....
T Consensus 83 ~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~----------- 151 (251)
T d2c07a1 83 TEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLT----------- 151 (251)
T ss_dssp HHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH-----------
T ss_pred HhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcC-----------
Confidence 58999999988 12335788899999999988888763 44556999999987652
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccc
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (520)
+......|+.||+..+.+.+.++. .+|+++.++.||.+-.+......+...+......| ..-+.
T Consensus 152 ----~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~p---------l~R~~ 218 (251)
T d2c07a1 152 ----GNVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKISEQIKKNIISNIP---------AGRMG 218 (251)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----CCHHHHHHHHTTCT---------TSSCB
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEecccccccCHHHHHHHHhcCC---------CCCCc
Confidence 122346899999999999887743 37899999999999877655444555555544433 22355
Q ss_pred cHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 226 ~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..+|+|++++.++. .......|+++.+.++-
T Consensus 219 ~pedvA~~v~fL~S---~~s~~itG~~i~vDGG~ 249 (251)
T d2c07a1 219 TPEEVANLACFLSS---DKSGYINGRVFVIDGGL 249 (251)
T ss_dssp CHHHHHHHHHHHHS---GGGTTCCSCEEEESTTS
T ss_pred CHHHHHHHHHHHhC---chhCCCcCcEEEECCCc
Confidence 69999999988874 11345789999998763
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.70 E-value=2.6e-17 Score=156.67 Aligned_cols=218 Identities=11% Similarity=0.079 Sum_probs=153.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
++|++|||||++-||.++++.|.++| ++|.+.|+. ++..... ...+...+++|++|+++++++++
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~G-~~V~~~~~~--------~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~ 71 (248)
T d2d1ya1 4 AGKGVLVTGGARGIGRAIAQAFAREG-ALVALCDLR--------PEGKEVA---EAIGGAFFQVDLEDERERVRFVEEAA 71 (248)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESS--------TTHHHHH---HHHTCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECC--------HHHHHHH---HHcCCeEEEEeCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999 599996543 2211111 12245789999999988777764
Q ss_pred ----CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCCCC
Q 010005 84 ----GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 ----~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
+.|++||.||. ..+..+++..+++|+.++.++.+++. +.+-.++|++||...+.
T Consensus 72 ~~~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~----------- 140 (248)
T d2d1ya1 72 YALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLF----------- 140 (248)
T ss_dssp HHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS-----------
T ss_pred HhcCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccccc-----------
Confidence 58999999997 22345678899999999999988875 34556999999988752
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCc----eEEecCCCcc
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT----KFIIGSGENM 221 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~----~~i~g~g~~~ 221 (520)
+......|+.+|+..+.+.+.++.+ +|+++.++-||.+-.|. +.+....+.. .....+..++
T Consensus 141 ----~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~-------~~~~~~~~~~~~~~~~~~~~~~pl 209 (248)
T d2d1ya1 141 ----AEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEA-------VLEAIALSPDPERTRRDWEDLHAL 209 (248)
T ss_dssp ----BCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH-------HHHHHC--------CHHHHTTSTT
T ss_pred ----cccccchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCch-------HHHHhhcCCCHHHHHHHHHhcCCC
Confidence 2234568999999999887766433 68999999999886432 1111110000 0001111223
Q ss_pred cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
.-+...+|+|.++..++. +......|+.+.+.++-..
T Consensus 210 ~R~~~pedia~~v~fL~S---~~s~~itG~~i~vDGG~ta 246 (248)
T d2d1ya1 210 RRLGKPEEVAEAVLFLAS---EKASFITGAILPVDGGMTA 246 (248)
T ss_dssp SSCBCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTGGG
T ss_pred CCCcCHHHHHHHHHHHhC---chhcCCCCcEEEcCcCccc
Confidence 346679999999998874 1134578999999887543
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.70 E-value=4.7e-17 Score=154.33 Aligned_cols=212 Identities=15% Similarity=0.108 Sum_probs=153.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
-++|+++||||++-||+++++.|+++| ++|++.|+.. ++ ..+.+.+ ..+...+.+|++|+++++++++
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G-~~V~~~~r~~--------~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~ 73 (244)
T d1nffa_ 4 LTGKVALVSGGARGMGASHVRAMVAEG-AKVVFGDILD--------EEGKAMAAEL-ADAARYVHLDVTQPAQWKAAVDT 73 (244)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHT-GGGEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCH--------HHHHHHHHHh-hCcceEEEeecCCHHHHHHHHHH
Confidence 467999999999999999999999999 5999965432 21 0011111 2357889999999988877764
Q ss_pred ------CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCC
Q 010005 84 ------GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 ------~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|++||+||. ..+..+++..+++|+.++.++.+++. +.+-.++|++||...+.
T Consensus 74 ~~~~~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~--------- 144 (244)
T d1nffa_ 74 AVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLA--------- 144 (244)
T ss_dssp HHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS---------
T ss_pred HHHHhCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEecccccccc---------
Confidence 58999999998 22345678899999999999888663 33456899999987641
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
+......|+.+|+..+.+.+.++. .+|+++.++-||.+-.|..... .... ......-
T Consensus 145 ------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~--------~~~~------~~~pl~R 204 (244)
T d1nffa_ 145 ------GTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWV--------PEDI------FQTALGR 204 (244)
T ss_dssp ------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTS--------CTTC------SCCSSSS
T ss_pred ------ccccccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhhh--------hHHH------HhccccC
Confidence 112346899999999998877653 3789999999999876532111 0000 0122334
Q ss_pred cccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+...+|+|++++.++. +......|+++.+.++.
T Consensus 205 ~~~p~diA~~v~fL~s---~~s~~itG~~i~vDGG~ 237 (244)
T d1nffa_ 205 AAEPVEVSNLVVYLAS---DESSYSTGAEFVVDGGT 237 (244)
T ss_dssp CBCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTG
T ss_pred CCCHHHHHHHHHHHhC---hhhCCCcCCEEEECCCe
Confidence 6789999999998874 11345789999998764
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.68 E-value=2.2e-16 Score=150.59 Aligned_cols=217 Identities=14% Similarity=0.094 Sum_probs=151.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
-++|++|||||++-||.+++++|.++| .+|++.|+.. ++ ....+.+ ..++..+.+|++|+++++++++
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~--------~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~ 72 (254)
T d1hdca_ 3 LSGKTVIITGGARGLGAEAARQAVAAG-ARVVLADVLD--------EEGAATAREL-GDAARYQHLDVTIEEDWQRVVAY 72 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHTT-GGGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCC-CEEEEEECCH--------HHHHHHHHHh-CCceEEEEcccCCHHHHHHHHHH
Confidence 367999999999999999999999999 5999965432 20 0011111 2457889999999998887764
Q ss_pred ------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCC
Q 010005 84 ------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 ------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|++||+|+.. ....+++..+++|+.++.++.+++. +.+-.++|++||...+.
T Consensus 73 ~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~--------- 143 (254)
T d1hdca_ 73 AREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLM--------- 143 (254)
T ss_dssp HHHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS---------
T ss_pred HHHHcCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhcc---------
Confidence 589999999982 3345677899999999999988774 44556999999987652
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
+......|+.+|+..+.+.+.++. .+|+++.++-||.+..+. ..+....... ... ...++.-
T Consensus 144 ------~~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~~-------~~~~~~~~~~-~~~-~~~pl~R 208 (254)
T d1hdca_ 144 ------GLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPM-------TAETGIRQGE-GNY-PNTPMGR 208 (254)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH-------HHHHTCCCST-TSC-TTSTTSS
T ss_pred ------cccchhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCcc-------chhcCHHHHH-HHH-hCCCCCC
Confidence 222356899999999998877753 368999999999886431 1111111000 000 0011111
Q ss_pred c-ccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 224 F-TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 224 ~-i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+ +..+|+|.+++.++- .......|+++.+.++.
T Consensus 209 ~g~~PedvA~~v~fL~S---~~a~~itG~~i~vDGG~ 242 (254)
T d1hdca_ 209 VGNEPGEIAGAVVKLLS---DTSSYVTGAELAVDGGW 242 (254)
T ss_dssp CB-CHHHHHHHHHHHHS---GGGTTCCSCEEEESTTT
T ss_pred CCCCHHHHHHHHHHHhc---hhhCCCCCceEEeCCCc
Confidence 2 347999999998874 11345789999998875
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.68 E-value=1.6e-16 Score=151.41 Aligned_cols=220 Identities=12% Similarity=0.076 Sum_probs=152.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
-++|++|||||++-||+++++.|.++| .+|.+.|+.... ... ...+.....++..+.+|++|++++.++++
T Consensus 4 L~gK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~----~~~--~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFVEEG-AKVMITGRHSDV----GEK--AAKSVGTPDQIQFFQHDSSDEDGWTKLFDAT 76 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHH----HHH--HHHHHCCTTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH----HHH--HHHHhCCCCcEEEEEccCCCHHHHHHHHHHH
Confidence 357999999999999999999999999 599996543210 000 00011123468899999999988777664
Q ss_pred -----CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHH----HCCC-CEEEEeecccccccCCCCCCCC
Q 010005 84 -----GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACR----ECKV-RRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 -----~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gv-kr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|++||+|+. ..+..+++..+++|+.++.++.+++. +.+. .++|++||...+.
T Consensus 77 ~~~~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~--------- 147 (251)
T d1zk4a1 77 EKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFV--------- 147 (251)
T ss_dssp HHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTS---------
T ss_pred HHHhCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceec---------
Confidence 58999999988 12345677899999999999988864 3343 3789999987641
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhc-----CCCCceEEEEecCccccCCCCCch-HHHHHHhcCCCceEEecCCCc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFAN-----NIDGLLTCALRPSNVFGPGDTQLV-PLLVNLAKPGWTKFIIGSGEN 220 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~-----~~~gi~~~ilRp~~vyGp~~~~~~-~~l~~~~~~g~~~~i~g~g~~ 220 (520)
+......|+.+|...+.+.+.++ ..+|+++.++.||.+-.+...... +......... .+
T Consensus 148 ------~~~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~---------~p 212 (251)
T d1zk4a1 148 ------GDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQRTK---------TP 212 (251)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTTHHHHHTSTTT---------CT
T ss_pred ------cCCCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhcCCHHHHHHHHhC---------CC
Confidence 11234689999999998877654 357999999999998754321111 1111111111 12
Q ss_pred ccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..-+...+|+|.+++.++- +......|+.+.+.++-
T Consensus 213 l~R~~~pedvA~~v~fL~S---~~s~~itG~~i~vDGG~ 248 (251)
T d1zk4a1 213 MGHIGEPNDIAYICVYLAS---NESKFATGSEFVVDGGY 248 (251)
T ss_dssp TSSCBCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTG
T ss_pred CCCCcCHHHHHHHHHHHhC---chhCCCcCcEEEECccc
Confidence 2346679999999998774 11345789999998763
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.67 E-value=3.1e-16 Score=149.10 Aligned_cols=220 Identities=12% Similarity=0.108 Sum_probs=150.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++|.++||||++-||+++++.|.++| ++|.+.|+.... ....... ....++..+.+|++|+++++++++
T Consensus 3 L~gKvalVTGas~GIG~aia~~la~~G-a~V~~~~~~~~~-----~~~~~~~--~~g~~~~~~~~Dvs~~~~v~~~~~~~ 74 (247)
T d2ew8a1 3 LKDKLAVITGGANGIGRAIAERFAVEG-ADIAIADLVPAP-----EAEAAIR--NLGRRVLTVKCDVSQPGDVEAFGKQV 74 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCH-----HHHHHHH--HTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCchH-----HHHHHHH--HcCCcEEEEEeeCCCHHHHHHHHHHH
Confidence 467999999999999999999999999 699996653210 0000000 123468899999999998887764
Q ss_pred -----CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|++||.||. ..+..+++..+++|+.++.++.+++. +.+-.++|++||.....
T Consensus 75 ~~~~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~---------- 144 (247)
T d2ew8a1 75 ISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWL---------- 144 (247)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS----------
T ss_pred HHHcCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhcc----------
Confidence 58999999998 23446788999999999999888764 44556899999987641
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCch-HHHHHHhcCCCceEEecCCCcccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV-PLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~-~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
+......|+.||+..+.+.+.++. .+|+++.++.||.+-.+...... ....+. .........-
T Consensus 145 -----~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~--------~~~~~~~l~r 211 (247)
T d2ew8a1 145 -----KIEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALSAMFDV--------LPNMLQAIPR 211 (247)
T ss_dssp -----CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC--------------------------CTTSSSCS
T ss_pred -----cCcccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCccccccccchhHHH--------HHHHhccCCC
Confidence 222346899999999988777653 37899999999998765432111 110110 1111112223
Q ss_pred cccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+...+|+|++++.++. +......|+++.+.++-
T Consensus 212 ~~~pedvA~~v~fL~S---~~s~~itG~~i~vDGG~ 244 (247)
T d2ew8a1 212 LQVPLDLTGAAAFLAS---DDASFITGQTLAVDGGM 244 (247)
T ss_dssp CCCTHHHHHHHHHHTS---GGGTTCCSCEEEESSSC
T ss_pred CCCHHHHHHHHHHHhC---chhcCCcCCeEEECCCE
Confidence 5668999999988774 11345789999998764
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=1.1e-16 Score=152.92 Aligned_cols=220 Identities=10% Similarity=0.078 Sum_probs=155.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
++|++|||||++-||++++++|.++| ++|++.|+.... +.. ....+.+ ...++..+.+|++|+++++++++
T Consensus 10 ~gK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~-~~~--~~~~l~~--~g~~~~~~~~Dvs~~~~~~~~~~~~~ 83 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFATAG-ASVVVSDINADA-ANH--VVDEIQQ--LGGQAFACRCDITSEQELSALADFAI 83 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTT-CEEEEEESCHHH-HHH--HHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHH-HHH--HHHHHHH--cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 57999999999999999999999999 699995543210 000 0001111 12467889999999988877664
Q ss_pred ----CCCEEEEcccCC------CCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCCCCCC
Q 010005 84 ----GASTVFYVDATD------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDET 149 (520)
Q Consensus 84 ----~~D~Vih~aa~~------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~~~E~ 149 (520)
+.|++||+||.. .+..+++..+++|+.++.++.+++.. .+-.++|++||.....
T Consensus 84 ~~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~------------ 151 (255)
T d1fmca_ 84 SKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN------------ 151 (255)
T ss_dssp HHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC------------
T ss_pred HHcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchhc------------
Confidence 589999999982 23456788999999999988877643 3445899999987642
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCC-CchHHHHHHhcCCCceEEecCCCcccccc
Q 010005 150 LTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDT-QLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (520)
Q Consensus 150 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~-~~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (520)
+......|+.+|+..+.+.+.++. .+|+++.++-||.+-.+... ..-+...+...+..| ..-+.
T Consensus 152 ---~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~e~~~~~~~~~p---------l~R~g 219 (255)
T d1fmca_ 152 ---KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTP---------IRRLG 219 (255)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCCHHHHHHHHHTCS---------SCSCB
T ss_pred ---cccccccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhccCCHHHHHHHHhcCC---------CCCCc
Confidence 223356899999999988877653 37999999999998765321 122333333333222 22355
Q ss_pred cHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 226 ~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..+|+|.+++.++. +......|+++.+.++.
T Consensus 220 ~pedvA~~v~fL~S---~~s~~itG~~i~vDGG~ 250 (255)
T d1fmca_ 220 QPQDIANAALFLCS---PAASWVSGQILTVSGGG 250 (255)
T ss_dssp CHHHHHHHHHHHHS---GGGTTCCSCEEEESTTS
T ss_pred CHHHHHHHHHHHhC---chhcCCcCCEEEECcCc
Confidence 68999999998874 11345789999998875
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=2.3e-16 Score=149.64 Aligned_cols=217 Identities=16% Similarity=0.116 Sum_probs=155.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
..++|++|||||++-||+++++.|.++| ++|.+.|+. .++ ..+.+. .+++..+.+|++|+++++++++
T Consensus 4 ~L~GK~~lITGas~GIG~aia~~la~~G-~~V~~~~r~--------~~~l~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~ 72 (244)
T d1pr9a_ 4 FLAGRRVLVTGAGKGIGRGTVQALHATG-ARVVAVSRT--------QADLDSLVRE--CPGIEPVCVDLGDWEATERALG 72 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESC--------HHHHHHHHHH--STTCEEEECCTTCHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECC--------HHHHHHHHHh--cCCCeEEEEeCCCHHHHHHHHH
Confidence 3468999999999999999999999999 599995543 221 011111 1357889999999999999887
Q ss_pred ---CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHHH-----CCCCEEEEeecccccccCCCCCCCCCC
Q 010005 84 ---GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACRE-----CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 84 ---~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~~-----~gvkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
+.|++||.|+. ..+..+++..+++|+.++.++.+++.. .+-.++|++||.....
T Consensus 73 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~----------- 141 (244)
T d1pr9a_ 73 SVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR----------- 141 (244)
T ss_dssp TCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-----------
T ss_pred HhCCceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccc-----------
Confidence 47999999988 234467788999999999888877643 2346899999987642
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc--hHHHHHHhcCCCceEEecCCCcccc
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~--~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
+......|+.+|+..+.+.+.++.+ +|+++.++.||.+..+..... -+...+......| ..-
T Consensus 142 ----~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~p---------l~R 208 (244)
T d1pr9a_ 142 ----AVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIP---------LGK 208 (244)
T ss_dssp ----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTTSCSHHHHHHHHTTCT---------TCS
T ss_pred ----cccchhhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhhccChHHHHHHHhcCC---------CCC
Confidence 1223468999999999988777533 689999999999876521110 1122223322222 223
Q ss_pred cccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+...+|+|.++..++- .......|+++.+.++-
T Consensus 209 ~~~peevA~~v~fL~S---~~a~~itG~~i~vDGG~ 241 (244)
T d1pr9a_ 209 FAEVEHVVNAILFLLS---DRSGMTTGSTLPVEGGF 241 (244)
T ss_dssp CBCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTG
T ss_pred CcCHHHHHHHHHHHhC---chhCCcCCcEEEECccH
Confidence 6679999999998774 11345788999988753
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.67 E-value=6.8e-17 Score=155.02 Aligned_cols=226 Identities=11% Similarity=0.100 Sum_probs=151.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC--CCCCCC---CCCCCcEEEEecCCCHHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN--SLLPDS---LSSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~--~~l~~~---~~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
++|++|||||++-||++++++|.++| ++|++.|+ +... ....+. ....++..+.+|++|+++++++
T Consensus 3 ~gK~alITGas~GIG~aiA~~la~~G-a~V~~~~r--------~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~ 73 (260)
T d1x1ta1 3 KGKVAVVTGSTSGIGLGIATALAAQG-ADIVLNGF--------GDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGL 73 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEECC--------SCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHH
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeC--------CcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence 57899999999999999999999999 59998544 3210 000000 0124678899999999988877
Q ss_pred Hc-------CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCC
Q 010005 82 LE-------GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 82 l~-------~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~ 143 (520)
++ +.|++||.||. ..+..+++..+++|+.++.++.+++ ++.+-.++|++||.....
T Consensus 74 ~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~------ 147 (260)
T d1x1ta1 74 VDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLV------ 147 (260)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS------
T ss_pred HHHHHHHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeeccccccee------
Confidence 75 58999999998 2344677889999999998887776 444556999999987642
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCc---eEEecC
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT---KFIIGS 217 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~---~~i~g~ 217 (520)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+-.|.................. ......
T Consensus 148 ---------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (260)
T d1x1ta1 148 ---------ASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSE 218 (260)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CHHH
T ss_pred ---------ccCCcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhhhhhhhhhhcCCChHHHHHHHHHh
Confidence 122346899999999988777643 37999999999998766432222111110000000 000011
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..+..-+...+|+|++++.++- +......|+++.+.++-
T Consensus 219 ~~Pl~R~g~pediA~~v~fL~S---~~a~~itG~~i~vDGG~ 257 (260)
T d1x1ta1 219 KQPSLQFVTPEQLGGTAVFLAS---DAAAQITGTTVSVDGGW 257 (260)
T ss_dssp HCTTCCCBCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTG
T ss_pred cCCCCCCcCHHHHHHHHHHHhC---hhhCCCcCCEEEECcch
Confidence 1123346679999999998874 11345789999998763
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.67 E-value=5.2e-17 Score=155.39 Aligned_cols=228 Identities=13% Similarity=0.135 Sum_probs=155.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
++|+++||||++-||+++++.|.++| .+|.+.|+.. ++ ....+.+ ..++..+.+|++|+++++++++
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~--------~~l~~~~~~~-~~~~~~~~~Dvt~~~~v~~~~~~~ 73 (256)
T d1k2wa_ 4 DGKTALITGSARGIGRAFAEAYVREG-ARVAIADINL--------EAARATAAEI-GPAACAIALDVTDQASIDRCVAEL 73 (256)
T ss_dssp TTEEEEEETCSSHHHHHHHHHHHHTT-EEEEEEESCH--------HHHHHHHHHH-CTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCH--------HHHHHHHHHh-CCceEEEEeeCCCHHHHHHHHHHH
Confidence 57999999999999999999999999 6999965432 20 0011111 3467889999999998887764
Q ss_pred -----CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHHH-----CCCCEEEEeecccccccCCCCCCCC
Q 010005 84 -----GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACRE-----CKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 -----~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~~-----~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
++|++||.||. ..+..+++..+++|+.|+..+.+++.. .+-.++|++||....-
T Consensus 74 ~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~--------- 144 (256)
T d1k2wa_ 74 LDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRR--------- 144 (256)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS---------
T ss_pred HHHhCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhcc---------
Confidence 58999999997 124456788999999999998886532 2245899999987641
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCC--ceEEecCCCcc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGW--TKFIIGSGENM 221 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~--~~~i~g~g~~~ 221 (520)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+-.|..........+.-.... .........++
T Consensus 145 ------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl 218 (256)
T d1k2wa_ 145 ------GEALVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWDGVDAKFADYENLPRGEKKRQVGAAVPF 218 (256)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTHHHHHHHHHHHHTCCTTHHHHHHHHHSTT
T ss_pred ------ccccccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchhhhhhhhhhhhhccCChHHHHHHHHhcCCC
Confidence 223356899999999988877653 3789999999998876642222111111100000 00000001112
Q ss_pred cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC
Q 010005 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t 262 (520)
.-+...+|+|.+++.++- +......|+.+.+.++..++
T Consensus 219 gR~~~p~evA~~v~fL~S---~~a~~iTG~~i~vDGG~~ms 256 (256)
T d1k2wa_ 219 GRMGRAEDLTGMAIFLAT---PEADYIVAQTYNVDGGNWMS 256 (256)
T ss_dssp SSCBCHHHHHHHHHHTTS---GGGTTCCSCEEEESTTSSCC
T ss_pred CCCcCHHHHHHHHHHHhC---chhCCccCceEEECcchhhC
Confidence 235568999999987663 11345789999998876553
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.67 E-value=2.1e-16 Score=150.60 Aligned_cols=223 Identities=16% Similarity=0.131 Sum_probs=154.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++|++|||||++-||+++++.|.++| ++|.+.|+.... +. .....+.+. ...++..+.+|++|+++++++++
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~G-a~V~i~~r~~~~-~~--~~~~~l~~~-~g~~~~~~~~Dv~~~~~v~~~~~~~ 77 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAG-CSVVVASRNLEE-AS--EAAQKLTEK-YGVETMAFRCDVSNYEEVKKLLEAV 77 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HH--HHHHHHHHH-HCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH-HH--HHHHHHHHH-hCCcEEEEEccCCCHHHHHHHHHHH
Confidence 467999999999999999999999999 599996543210 00 000001010 12467889999999988877764
Q ss_pred -----CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|++||+||. ..+..+++..+++|+.++.++.+++.. .+-.++|++||......
T Consensus 78 ~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~~--------- 148 (251)
T d1vl8a_ 78 KEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEV--------- 148 (251)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCC---------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhccc---------
Confidence 58999999997 134457788999999999998888654 44569999998654210
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCch--HHHHHHhcCCCceEEecCCCccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~--~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+-.+...... +...+...+..| ..
T Consensus 149 -----~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~p---------l~ 214 (251)
T d1vl8a_ 149 -----TMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIP---------LG 214 (251)
T ss_dssp -----CSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTCT---------TS
T ss_pred -----cCccccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhccCCHHHHHHHHhcCC---------CC
Confidence 112346899999999998877653 36899999999999766432111 122222222222 22
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
-+...+|+|++++.++- +......|+++.+.++-
T Consensus 215 R~~~pedvA~~v~fL~S---~~a~~itG~~i~vDGG~ 248 (251)
T d1vl8a_ 215 RTGVPEDLKGVAVFLAS---EEAKYVTGQIIFVDGGW 248 (251)
T ss_dssp SCBCGGGGHHHHHHHHS---GGGTTCCSCEEEESTTG
T ss_pred CCCCHHHHHHHHHHHhC---chhCCCcCcEEEeCcCe
Confidence 34568999999998774 11345789999998764
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.67 E-value=9e-17 Score=152.29 Aligned_cols=216 Identities=16% Similarity=0.084 Sum_probs=153.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
++|++|||||++-||..+++.|.++| ++|++.+ |+.++ ....+.+ ..++..+++|++|+++++++++
T Consensus 4 ~gK~alItGas~GIG~aia~~l~~~G-~~V~~~~--------r~~~~~~~~~~~~-~~~~~~~~~Dls~~~~i~~~~~~i 73 (241)
T d2a4ka1 4 SGKTILVTGAASGIGRAALDLFAREG-ASLVAVD--------REERLLAEAVAAL-EAEAIAVVADVSDPKAVEAVFAEA 73 (241)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEE--------SCHHHHHHHHHTC-CSSEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEE--------CCHHHHHHHHHHc-CCceEEEEecCCCHHHHHHHHHHH
Confidence 57999999999999999999999999 6999954 44321 0011111 2467889999999998877665
Q ss_pred -----CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHHHCC--CCEEEEeecccccccCCCCCCCCCCC
Q 010005 84 -----GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHDIHNGDET 149 (520)
Q Consensus 84 -----~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g--vkr~V~~SS~~vyg~~~~~~~~~~E~ 149 (520)
+.|++||+|+. ..+..++...+++|+.++.++.+++...- -+.++.+||.+..
T Consensus 74 ~~~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~------------- 140 (241)
T d2a4ka1 74 LEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL------------- 140 (241)
T ss_dssp HHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC-------------
T ss_pred HHHhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccc-------------
Confidence 58999999987 23345678899999999999999886542 3345555554332
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccccccc
Q 010005 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY 226 (520)
Q Consensus 150 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~ 226 (520)
+......|+.+|+..|.+.+.++.+ +|+++.++.||.+-.+......+...+...+..| ..-+..
T Consensus 141 ---~~~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~p---------~~r~~~ 208 (241)
T d2a4ka1 141 ---GAFGLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGASP---------LGRAGR 208 (241)
T ss_dssp ---CHHHHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTSCHHHHHHHHHTST---------TCSCBC
T ss_pred ---cccCccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHHhhhHhHHHHHHhCCC---------CCCCcC
Confidence 1122457999999999998877543 6899999999998665433333444443333222 223556
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 227 v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
.+|+|+++..++- +......|+++.+.++..
T Consensus 209 p~dva~~v~fL~S---~~s~~itG~~i~vDGG~s 239 (241)
T d2a4ka1 209 PEEVAQAALFLLS---EESAYITGQALYVDGGRS 239 (241)
T ss_dssp HHHHHHHHHHHHS---GGGTTCCSCEEEESTTTT
T ss_pred HHHHHHHHHHHhc---chhCCCcCceEEeCCCcc
Confidence 9999999998885 113457899999988764
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.66 E-value=1e-16 Score=151.99 Aligned_cols=215 Identities=15% Similarity=0.110 Sum_probs=153.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
++|++|||||++-||+++++.|.++| ++|.+.|+ ++++ ..+.+. .+++..+.+|++|+++++++++
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~G-a~V~~~~r--------~~~~l~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~ 72 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHASG-AKVVAVTR--------TNSDLVSLAKE--CPGIEPVCVDLGDWDATEKALGGI 72 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEES--------CHHHHHHHHHH--STTCEEEECCTTCHHHHHHHHTTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEEC--------CHHHHHHHHHh--cCCCeEEEEeCCCHHHHHHHHHHc
Confidence 57999999999999999999999999 59999554 3221 011111 2367889999999999999987
Q ss_pred -CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHHH-----CCCCEEEEeecccccccCCCCCCCCCCCc
Q 010005 84 -GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACRE-----CKVRRLVYNSTADVVFDGSHDIHNGDETL 150 (520)
Q Consensus 84 -~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~~-----~gvkr~V~~SS~~vyg~~~~~~~~~~E~~ 150 (520)
+.|++||+||. ..+..+++..+++|+.++.++.+++.. .+-.++|++||.....
T Consensus 73 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~------------- 139 (242)
T d1cyda_ 73 GPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV------------- 139 (242)
T ss_dssp CCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-------------
T ss_pred CCCeEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccc-------------
Confidence 47999999997 234456788999999999999887643 2345899999987642
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCC--chHHHHHHhcCCCceEEecCCCcccccc
Q 010005 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (520)
Q Consensus 151 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~--~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (520)
+......|+.+|+..+.+.+.++.+ +|+++.++-||.+-.|.... --+...+.+.... +..-+.
T Consensus 140 --~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~---------pl~R~~ 208 (242)
T d1cyda_ 140 --TFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERH---------PLRKFA 208 (242)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHS---------TTSSCB
T ss_pred --cCCccccccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHhhcCCHHHHHHHHhcC---------CCCCCc
Confidence 1123468999999999998877543 68999999999887542110 0122222222211 122356
Q ss_pred cHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 226 ~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..+|+|+++..++. +......|+++.+.++.
T Consensus 209 ~peeva~~v~fL~S---~~s~~itG~~i~vDGG~ 239 (242)
T d1cyda_ 209 EVEDVVNSILFLLS---DRSASTSGGGILVDAGY 239 (242)
T ss_dssp CHHHHHHHHHHHHS---GGGTTCCSSEEEESTTG
T ss_pred CHHHHHHHHHHHhC---chhcCcCCceEEeCcch
Confidence 69999999998874 11345789999998763
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=4.8e-17 Score=155.47 Aligned_cols=225 Identities=14% Similarity=0.070 Sum_probs=154.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
++|.+|||||++-||.++++.|.++| ++|.+.|+.... +. .....+.+.....++..+.+|++|+++++++++
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~G-a~V~i~~r~~~~-~~--~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKG-AKVALVDWNLEA-GV--QCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVV 77 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HH--HHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH-HH--HHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 47899999999999999999999999 699996653210 00 000111222233467889999999988887764
Q ss_pred ----CCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHC----C---CCEEEEeecccccccCCCCCCCCCCCccC
Q 010005 84 ----GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC----K---VRRLVYNSTADVVFDGSHDIHNGDETLTC 152 (520)
Q Consensus 84 ----~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~----g---vkr~V~~SS~~vyg~~~~~~~~~~E~~~~ 152 (520)
+.|++||.|+... ..+++..+++|+.++.++..++... + -.++|++||...+.
T Consensus 78 ~~~G~iDilVnnAg~~~-~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~--------------- 141 (254)
T d2gdza1 78 DHFGRLDILVNNAGVNN-EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLM--------------- 141 (254)
T ss_dssp HHHSCCCEEEECCCCCC-SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS---------------
T ss_pred HHcCCcCeecccccccc-cccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhcc---------------
Confidence 5899999999843 3678999999999998887777532 1 24699999987641
Q ss_pred CCCCCChHHHHHHHHHHHHHH--h---cCCCCceEEEEecCccccCCCCCchH--------HHHHHhcCCCceEEecCCC
Q 010005 153 CWKFQDLMCDLKAQAEALVLF--A---NNIDGLLTCALRPSNVFGPGDTQLVP--------LLVNLAKPGWTKFIIGSGE 219 (520)
Q Consensus 153 ~~~p~~~Y~~sK~~~E~~~~~--~---~~~~gi~~~ilRp~~vyGp~~~~~~~--------~l~~~~~~g~~~~i~g~g~ 219 (520)
+......|+.||+..+.+.+. + ...+|+++.++.||.+-.|....... ...+.+... .
T Consensus 142 ~~~~~~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 212 (254)
T d2gdza1 142 PVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDM---------I 212 (254)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHHH---------H
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCChhhhhccccccccccHHHHHHHHhc---------C
Confidence 223346899999999988663 1 12479999999999885431100000 000000000 0
Q ss_pred cccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcCHHH
Q 010005 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWD 265 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t~~e 265 (520)
+..-+...+|+|++++.++. .+...|+++.+.++..+.++|
T Consensus 213 p~~r~~~pedvA~~v~fL~s-----~~~itG~~i~VdGG~~~~~~~ 253 (254)
T d2gdza1 213 KYYGILDPPLIANGLITLIE-----DDALNGAIMKITTSKGIHFQD 253 (254)
T ss_dssp HHHCCBCHHHHHHHHHHHHH-----CTTCSSCEEEEETTTEEEECC
T ss_pred CCCCCcCHHHHHHHHHHHHc-----CCCCCCCEEEECCCCeeeccc
Confidence 11224568999999999887 356889999999987665543
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.66 E-value=3.3e-16 Score=149.85 Aligned_cols=223 Identities=13% Similarity=0.089 Sum_probs=154.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
++|+++||||++-||+.+++.|.++| .+|.+.|+.... +.. ....+.+.....++..+.+|++|+++++++++
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~~~-l~~--~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~ 78 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAEG-AKLSLVDVSSEG-LEA--SKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATT 78 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHH--HHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH-HHH--HHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999 599996543210 000 00011111123467889999999998877764
Q ss_pred ----CCCEEEEcccCC--------CCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 ----GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 ----~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
+.|++||.||.. .+..+++..+++|+.++.++.+++. +.+-.++|++||.....
T Consensus 79 ~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~---------- 148 (258)
T d1iy8a_ 79 ERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIR---------- 148 (258)
T ss_dssp HHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS----------
T ss_pred HHhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhcc----------
Confidence 589999999861 2345678899999999999988763 33456899999987641
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCC--------CchHHHHHHhcCCCceEEec
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDT--------QLVPLLVNLAKPGWTKFIIG 216 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~--------~~~~~l~~~~~~g~~~~i~g 216 (520)
+......|+.+|+..+.+.+.++. .+|+++.++-||.+..|... .......+......
T Consensus 149 -----~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~------ 217 (258)
T d1iy8a_ 149 -----GIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVN------ 217 (258)
T ss_dssp -----BCSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTC------
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhhcCcccHHHHHHHHHhcC------
Confidence 122357899999999988777643 36899999999998754211 01111222222222
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
+..-+...+|+|++++.++. +......|+++.+.++..
T Consensus 218 ---pl~R~~~p~dvA~~v~fL~S---~~s~~itG~~i~VDGG~s 255 (258)
T d1iy8a_ 218 ---PSKRYGEAPEIAAVVAFLLS---DDASYVNATVVPIDGGQS 255 (258)
T ss_dssp ---TTCSCBCHHHHHHHHHHHTS---GGGTTCCSCEEEESTTTT
T ss_pred ---CCCCCcCHHHHHHHHHHHhC---chhcCCcCceEEcCcchh
Confidence 22335669999999998774 113457899999988764
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.65 E-value=5.5e-16 Score=148.28 Aligned_cols=217 Identities=12% Similarity=0.055 Sum_probs=152.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
++|++|||||++-||+++++.|+++| ++|++.|+ ++.+ ....+.+ .......+.+|++|.++++++++
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G-~~V~i~~r--------~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~ 75 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLG-ARVYTCSR--------NEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQ 75 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEES--------CHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEEC--------CHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHH
Confidence 67999999999999999999999999 69999554 3220 0000011 12456788999999988776653
Q ss_pred -------C-CCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCC
Q 010005 84 -------G-ASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 84 -------~-~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
+ .|++||+|+. .....++...+++|+.++.++.+++.. .+..++|++||.....
T Consensus 76 ~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~------- 148 (258)
T d1ae1a_ 76 TVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFS------- 148 (258)
T ss_dssp HHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTS-------
T ss_pred HHHHHhCCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccccccccccccccccc-------
Confidence 3 7999999998 234567889999999999999887653 3567999999988742
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCc------hHHHHHHhcCCCceEEe
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL------VPLLVNLAKPGWTKFII 215 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~------~~~l~~~~~~g~~~~i~ 215 (520)
+......|+.+|...+.+.+.++.+ +|+++.++.||.+..+..... .....+.+....
T Consensus 149 --------~~~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~----- 215 (258)
T d1ae1a_ 149 --------ALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKT----- 215 (258)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHS-----
T ss_pred --------ccccchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhhhhHHHHHHHHhcC-----
Confidence 1223568999999999988877543 689999999999987643221 112222222211
Q ss_pred cCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 216 g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+..-+...+|+|.+++.++- .......|+.+.+.++-
T Consensus 216 ----plgR~~~pediA~~v~fL~S---~~s~~itG~~i~vDGG~ 252 (258)
T d1ae1a_ 216 ----PMGRAGKPQEVSALIAFLCF---PAASYITGQIIWADGGF 252 (258)
T ss_dssp ----TTCSCBCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTG
T ss_pred ----CCCCCcCHHHHHHHHHHHhC---hhhCCCcCcEEEeCCCe
Confidence 12236679999999998883 11345788999998764
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.65 E-value=2.6e-16 Score=149.34 Aligned_cols=217 Identities=15% Similarity=0.089 Sum_probs=154.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHHHc--
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
+.||||||++-||++++++|+++| ++|.+.|.. ++.. ..+.+.+ ...++..+.+|++|+++++++++
T Consensus 2 pV~lITGas~GIG~a~a~~la~~G-a~V~i~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~ 73 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAG-CKVLVNYAR-------SAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTA 73 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESS-------CHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCC-------CHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 579999999999999999999999 688875432 2210 0011111 12457789999999998877764
Q ss_pred -----CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
+.|++||.|+. .....+++..+++|+.++.++.+++. +.+-.++|++||...+-
T Consensus 74 ~~~~g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~---------- 143 (244)
T d1edoa_ 74 IDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLI---------- 143 (244)
T ss_dssp HHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH----------
T ss_pred HHHcCCCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcC----------
Confidence 58999999998 23446778899999999999888764 34556999999987652
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (520)
+......|+.+|+..+.+.+.++.+ +|+++.++-||.+-.+......+...+......| ..-+
T Consensus 144 -----~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~p---------l~R~ 209 (244)
T d1edoa_ 144 -----GNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIP---------LGRT 209 (244)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCHHHHHHHHTSCT---------TCSC
T ss_pred -----CCCCCHHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHHHHhhHHHHHHHHhcCC---------CCCC
Confidence 2223568999999999988776543 7999999999988654322333344444443332 2235
Q ss_pred ccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 225 i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
...+|+|+++..++.. +......|+++.+.+|-
T Consensus 210 ~~p~dvA~~v~fLa~S--~~a~~itG~~i~vdGG~ 242 (244)
T d1edoa_ 210 GQPENVAGLVEFLALS--PAASYITGQAFTIDGGI 242 (244)
T ss_dssp BCHHHHHHHHHHHHHC--SGGGGCCSCEEEESTTT
T ss_pred cCHHHHHHHHHHHHCC--chhcCCcCCeEEeCCCe
Confidence 5689999999987531 11235789999998764
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.65 E-value=3.9e-16 Score=149.39 Aligned_cols=221 Identities=13% Similarity=0.131 Sum_probs=142.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++|++|||||++-||.++++.|+++| .+|++.|+.... +... ...+.. ...++..+.+|++|++++.++++
T Consensus 6 LkgK~alVTGas~GIG~aiA~~la~~G-a~V~~~~r~~~~-l~~~--~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~ 79 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKGIGHAIVEEFAGFG-AVIHTCARNEYE-LNEC--LSKWQK--KGFQVTGSVCDASLRPEREKLMQTV 79 (259)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHHH--TTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH-HHHH--HHHHHh--cCCceEEEeccCCCHHHHHHHHHHH
Confidence 468999999999999999999999999 599995543210 0000 000001 12468889999999987766553
Q ss_pred -----C-CCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCC
Q 010005 84 -----G-ASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 -----~-~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
+ .|++||+||. ..+..+++..+++|+.++..+.+++. +.+-.++|++||.....
T Consensus 80 ~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~--------- 150 (259)
T d1xq1a_ 80 SSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVV--------- 150 (259)
T ss_dssp HHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC---------------
T ss_pred HHHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccccccccccccccc---------
Confidence 3 7999999998 23446788899999999998888764 34556999999987641
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchH-HHHHHhcCCCceEEecCCCccc
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-LLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~-~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
+......|+.+|...+.+.+.++.+ +|+++.++-||.+-.|......+ ...+..... .+..
T Consensus 151 ------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~---------~pl~ 215 (259)
T d1xq1a_ 151 ------SASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYDDEFKKVVISR---------KPLG 215 (259)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC--------------------------------
T ss_pred ------cccccccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhhhchHHHHHHHHhC---------CCCC
Confidence 2233578999999999887766543 68999999999987664332211 111111111 1222
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
-+...+|+|.+++.++- +......|+.+.+.++.
T Consensus 216 R~~~pedvA~~v~fL~S---~~s~~iTG~~i~vDGG~ 249 (259)
T d1xq1a_ 216 RFGEPEEVSSLVAFLCM---PAASYITGQTICVDGGL 249 (259)
T ss_dssp --CCGGGGHHHHHHHTS---GGGTTCCSCEEECCCCE
T ss_pred CCcCHHHHHHHHHHHhC---chhcCCcCcEEEeCCCE
Confidence 35568999999988773 11345788998888764
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=6.7e-16 Score=146.86 Aligned_cols=216 Identities=14% Similarity=0.105 Sum_probs=152.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
++|++|||||++-||+++++.|.++| ++|++.|+.. +. ..+.+. .++...+.+|++|+++++++++
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~--------~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~~ 73 (250)
T d1ydea1 5 AGKVVVVTGGGRGIGAGIVRAFVNSG-ARVVICDKDE--------SGGRALEQE--LPGAVFILCDVTQEDDVKTLVSET 73 (250)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHH--CTTEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCH--------HHHHHHHHh--cCCCeEEEccCCCHHHHHHHHHHH
Confidence 57999999999999999999999999 5999965432 20 011111 1357889999999988887764
Q ss_pred -----CCCEEEEcccCC--------CCCcchhhHHhhhHHHHHHHHHHHHHC---CCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~ll~aa~~~---gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
+.|++||.||.. .+..+++..+++|+.++.++.+++... +-.++|++||.....
T Consensus 74 ~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~~~---------- 143 (250)
T d1ydea1 74 IRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAI---------- 143 (250)
T ss_dssp HHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHH----------
T ss_pred HHhcCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccccccc----------
Confidence 589999999861 223457789999999999988877532 125899999987752
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCC------CchHHHHHHhcCCCceEEecCC
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~------~~~~~l~~~~~~g~~~~i~g~g 218 (520)
+......|+.+|+..+.+.+.++. .+|+++.++.||.|-.|... .-.....+......
T Consensus 144 -----~~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~-------- 210 (250)
T d1ydea1 144 -----GQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQ-------- 210 (250)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTS--------
T ss_pred -----cccCcchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHHhhcCCCHHHHHHHHHhcC--------
Confidence 223356899999999998777654 36899999999998643110 00011111111111
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
++.-+...+|+|.+++.++- +.....|+++.+.++..+
T Consensus 211 -pl~R~g~p~eva~~v~fL~S----da~~itG~~i~vDGG~~l 248 (250)
T d1ydea1 211 -PLGRMGQPAEVGAAAVFLAS----EANFCTGIELLVTGGAEL 248 (250)
T ss_dssp -TTSSCBCHHHHHHHHHHHHH----HCTTCCSCEEEESTTTTS
T ss_pred -CCCCCCCHHHHHHHHHHHhC----ccCCCcCCeEEECCCccc
Confidence 12345679999999998774 134678999999887543
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.64 E-value=3.3e-16 Score=150.18 Aligned_cols=228 Identities=16% Similarity=0.139 Sum_probs=154.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~-~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
-++|++|||||++-||.+++++|.++| ++|++.|+.... ... ...+.+. ...++..+.+|++|++++.++++
T Consensus 7 l~gK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~~~----~~~~~~~~~~~-~g~~~~~~~~Dv~~~~~v~~~~~~ 80 (260)
T d1h5qa_ 7 FVNKTIIVTGGNRGIGLAFTRAVAAAG-ANVAVIYRSAAD----AVEVTEKVGKE-FGVKTKAYQCDVSNTDIVTKTIQQ 80 (260)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTT-EEEEEEESSCTT----HHHHHHHHHHH-HTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH----HHHHHHHHHHH-hCCceEEEEccCCCHHHHHHHHHH
Confidence 357999999999999999999999999 699996553210 000 0000000 13467889999999998887774
Q ss_pred ------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHH-----CCCCEEEEeecccccccCCCCCCC
Q 010005 84 ------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE-----CKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 ------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~-----~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
+.|++||+|+.. .+..+++..+++|+.++.++.+++.. .+-.+++..||.........
T Consensus 81 ~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~---- 156 (260)
T d1h5qa_ 81 IDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQS---- 156 (260)
T ss_dssp HHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEE----
T ss_pred HHHHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeecccccccccc----
Confidence 579999999872 33456788999999999888776643 23445666666654311110
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
...+......|+.+|+..+.+.+.++. .+|+++.++.||.+-.+......+...+......| ..
T Consensus 157 ----~~~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~p---------l~ 223 (260)
T d1h5qa_ 157 ----SLNGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMDKKIRDHQASNIP---------LN 223 (260)
T ss_dssp ----ETTEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSCHHHHHHHHHTCT---------TS
T ss_pred ----ccccCccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchhccCHHHHHHHHhcCC---------CC
Confidence 000122356899999999988777653 37899999999998766443333444444333322 22
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
-+...+|+|.+++.++- .......|+++.+.++.
T Consensus 224 R~g~pedvA~~v~fL~S---~~s~~itG~~i~VDGG~ 257 (260)
T d1h5qa_ 224 RFAQPEEMTGQAILLLS---DHATYMTGGEYFIDGGQ 257 (260)
T ss_dssp SCBCGGGGHHHHHHHHS---GGGTTCCSCEEEECTTG
T ss_pred CCcCHHHHHHHHHHHhc---chhCCCcCceEEECCCe
Confidence 34568999999988774 11245789999998865
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.64 E-value=4.9e-16 Score=148.81 Aligned_cols=222 Identities=14% Similarity=0.123 Sum_probs=154.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEEecCCCHHHHHHHH
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
..++|+++||||++-||.++++.|.++| ++|++.|+... .......+.+ ...++..+.+|++|++++++++
T Consensus 4 dL~gK~alITGas~GIG~aia~~la~~G-~~Vv~~~r~~~------~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~ 76 (261)
T d1geea_ 4 DLEGKVVVITGSSTGLGKSMAIRFATEK-AKVVVNYRSKE------DEANSVLEEIKKVGGEAIAVKGDVTVESDVINLV 76 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCH------HHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcH------HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 3578999999999999999999999999 59998554321 0000000111 1235778999999998887776
Q ss_pred c-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHH----HCCC-CEEEEeecccccccCCCCC
Q 010005 83 E-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECKV-RRLVYNSTADVVFDGSHDI 143 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gv-kr~V~~SS~~vyg~~~~~~ 143 (520)
+ +.|++||.||.. .+..+++..+++|+.++.++.+++. +.+- .++|++||.+...
T Consensus 77 ~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~------ 150 (261)
T d1geea_ 77 QSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI------ 150 (261)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS------
T ss_pred HHHHHHhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcc------
Confidence 4 589999999982 3445778899999999988877763 4443 3588999987541
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCch--HHHHHHhcCCCceEEecCC
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~--~~l~~~~~~g~~~~i~g~g 218 (520)
+......|+.+|+..+.+.+.++. .+|+++.++-||.+..|...... +.......+..|
T Consensus 151 ---------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~p------- 214 (261)
T d1geea_ 151 ---------PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIP------- 214 (261)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTCT-------
T ss_pred ---------cCccccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHhhhcCCHHHHHHHHhcCC-------
Confidence 122346899999999988777643 36899999999998765322111 122222322222
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
..-+...+|+|.+++.++- .......|+++.+.++..
T Consensus 215 --l~R~~~pediA~~v~fL~S---~~s~~itG~~i~vDGG~s 251 (261)
T d1geea_ 215 --MGYIGEPEEIAAVAAWLAS---SEASYVTGITLFADGGMT 251 (261)
T ss_dssp --TSSCBCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTGG
T ss_pred --CCCCCCHHHHHHHHHHHhC---chhcCCcCCeEEECCCee
Confidence 2235568999999998874 113457899999988753
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.64 E-value=1.1e-15 Score=144.16 Aligned_cols=212 Identities=13% Similarity=0.098 Sum_probs=151.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCH-HHHHHHHcC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI-SQIKKVLEG 84 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~-~~l~~~l~~ 84 (520)
.++|++|||||++-||+++++.|.++| ++|.+.|+ +++ .+ ...+.+++.+|+++. +.+.+.+.+
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~G-a~V~~~~r--------~~~--~l----~~~~~~~~~~Dv~~~~~~~~~~~g~ 66 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEG-AEVTICAR--------NEE--LL----KRSGHRYVVCDLRKDLDLLFEKVKE 66 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEES--------CHH--HH----HHTCSEEEECCTTTCHHHHHHHSCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEEC--------CHH--HH----HhcCCcEEEcchHHHHHHHHHHhCC
Confidence 367999999999999999999999999 59999554 322 11 123457889999873 455566667
Q ss_pred CCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCCCCCccCC
Q 010005 85 ASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDETLTCC 153 (520)
Q Consensus 85 ~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~ 153 (520)
+|++||.||. .....+++..+++|+.++..+.+++. +.+-.++|++||..... +
T Consensus 67 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~---------------~ 131 (234)
T d1o5ia_ 67 VDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVIS---------------P 131 (234)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS---------------C
T ss_pred CcEEEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccccccccccccccc---------------c
Confidence 9999999987 12345677889999999888877763 44556899999986642 2
Q ss_pred CCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCch-HHHHHHhcCCCceEEecCCCcccccccHHH
Q 010005 154 WKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV-PLLVNLAKPGWTKFIIGSGENMSDFTYVEN 229 (520)
Q Consensus 154 ~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~-~~l~~~~~~g~~~~i~g~g~~~~~~i~v~D 229 (520)
......|+.+|+..+.+.+.++. .+|+++.++.||.+-.+...... +...+...+.. +..-+...+|
T Consensus 132 ~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~---------pl~R~~~ped 202 (234)
T d1o5ia_ 132 IENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLSEEKKKQVESQI---------PMRRMAKPEE 202 (234)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHSCHHHHHHHHTTS---------TTSSCBCHHH
T ss_pred ccccccchhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhhhhhhcCHHHHHHHHhcC---------CCCCCcCHHH
Confidence 23456899999999888776643 36899999999998766432111 12222233222 2234667999
Q ss_pred HHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 230 VAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 230 va~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+|.+++.++. +......|+++.+.++-
T Consensus 203 iA~~v~fL~S---~~s~~itG~~i~vDGG~ 229 (234)
T d1o5ia_ 203 IASVVAFLCS---EKASYLTGQTIVVDGGL 229 (234)
T ss_dssp HHHHHHHHHS---GGGTTCCSCEEEESTTC
T ss_pred HHHHHHHHhC---hhhcCCcCcEEEECccc
Confidence 9999998774 11345789999998764
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.64 E-value=2.2e-15 Score=144.91 Aligned_cols=221 Identities=16% Similarity=0.141 Sum_probs=153.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++|++|||||++-||..++++|+++| .+|++.|+.... + .. ...+......+.++.+|++|+++++++++
T Consensus 4 L~gKvalITGas~GIG~aia~~la~~G-a~V~i~~r~~~~-~---~~--~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (268)
T d2bgka1 4 LQDKVAIITGGAGGIGETTAKLFVRYG-AKVVIADIADDH-G---QK--VCNNIGSPDVISFVHCDVTKDEDVRNLVDTT 76 (268)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-H---HH--HHHHHCCTTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHH-H---HH--HHHHhcCCCceEEEEccCCCHHHHHHHHHHH
Confidence 468999999999999999999999999 599996653210 0 00 00011123457789999999998887764
Q ss_pred -----CCCEEEEcccCC---------CCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCC
Q 010005 84 -----GASTVFYVDATD---------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 -----~~D~Vih~aa~~---------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|++||+||.. ....+++..+++|+.++..+.+++.. .+-.++|++||...+.
T Consensus 77 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~-------- 148 (268)
T d2bgka1 77 IAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFT-------- 148 (268)
T ss_dssp HHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTC--------
T ss_pred HHHcCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCccccccccccc--------
Confidence 589999999861 11235777899999999998887743 3456899999887641
Q ss_pred CCCCccCCCCC-CChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCc---hHH-HHHHhcCCCceEEecC
Q 010005 146 GDETLTCCWKF-QDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL---VPL-LVNLAKPGWTKFIIGS 217 (520)
Q Consensus 146 ~~E~~~~~~~p-~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~---~~~-l~~~~~~g~~~~i~g~ 217 (520)
+..+ ...|+.+|+..+.+.+.++. .+|+++.++.||.+-.|..... -+. ..........
T Consensus 149 -------~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~------ 215 (268)
T d2bgka1 149 -------AGEGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAAN------ 215 (268)
T ss_dssp -------CCTTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCS------
T ss_pred -------cccccccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcCCHHHHHHHHHhccc------
Confidence 1112 23799999999988777643 3789999999999988754321 111 1111111110
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
...-+...+|+|++++.++- .......|+++.+.++-
T Consensus 216 --~~gr~~~pedvA~~v~fL~S---~~s~~itGq~i~VDGG~ 252 (268)
T d2bgka1 216 --LKGTLLRAEDVADAVAYLAG---DESKYVSGLNLVIDGGY 252 (268)
T ss_dssp --SCSCCCCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTG
T ss_pred --cCCCCcCHHHHHHHHHHHhC---hhhCCccCceEEECcCc
Confidence 11135568999999998874 11345789999998874
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.64 E-value=5.7e-16 Score=148.19 Aligned_cols=218 Identities=13% Similarity=0.074 Sum_probs=153.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc----
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~---- 83 (520)
+|.+|||||++-||.++++.|.++| ++|.+.|+.... +... ...+.+ ...++..+.+|++|+++++++++
T Consensus 2 gKValITGas~GIG~aia~~la~~G-a~V~i~~r~~~~-l~~~--~~~l~~--~g~~~~~~~~Dvs~~~~v~~~~~~~~~ 75 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEG-LRVFVCARGEEG-LRTT--LKELRE--AGVEADGRTCDVRSVPEIEALVAAVVE 75 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHHH--TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH-HHHH--HHHHHh--cCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence 4778999999999999999999999 699995543210 0000 001111 12467889999999998887765
Q ss_pred ---CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHHH------CCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 ---GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACRE------CKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 ---~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~~------~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
+.|++||+||. ..+..+++..+++|+.++.++.+++.. .+-.++|++||...+.
T Consensus 76 ~~g~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~---------- 145 (257)
T d2rhca1 76 RYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQ---------- 145 (257)
T ss_dssp HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTS----------
T ss_pred HhCCCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCccccccccccccc----------
Confidence 48999999998 234457788999999999999998854 2445899999887641
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCC-----------CchHHHHHHhcCCCceE
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT-----------QLVPLLVNLAKPGWTKF 213 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~-----------~~~~~l~~~~~~g~~~~ 213 (520)
+......|+.+|+..+.+.+.++.+ +|+++.++-||.+-.|... ...+...+.+....|
T Consensus 146 -----~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~~P-- 218 (257)
T d2rhca1 146 -----GVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVP-- 218 (257)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTTST--
T ss_pred -----ccccchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHhcCC--
Confidence 2223568999999999888776543 6899999999998644211 111222333333222
Q ss_pred EecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 214 i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
..-+...+|+|++++.++- .......|+.+.+.++
T Consensus 219 -------lgR~~~pedia~~v~fL~S---~~s~~itG~~i~vDGG 253 (257)
T d2rhca1 219 -------IGRYVQPSEVAEMVAYLIG---PGAAAVTAQALNVCGG 253 (257)
T ss_dssp -------TSSCBCHHHHHHHHHHHTS---GGGTTCCSCEEEESTT
T ss_pred -------CCCCcCHHHHHHHHHHHhC---chhcCCcCceEEECcC
Confidence 2235669999999998774 1134578999999875
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.64 E-value=8.3e-16 Score=147.12 Aligned_cols=221 Identities=13% Similarity=0.086 Sum_probs=152.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++|++|||||++-||+++++.|.++| ++|++.|+.... +..- ...+.. ...+...+.+|++|+++++++++
T Consensus 6 L~GK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~-l~~~--~~~~~~--~g~~~~~~~~Dv~~~~~v~~~~~~~ 79 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELASLG-ASVYTCSRNQKE-LNDC--LTQWRS--KGFKVEASVCDLSSRSERQELMNTV 79 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHHH--TTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH-HHHH--HHHHHh--cCCCceEEEeeCCCHHHHHHHHHHH
Confidence 357999999999999999999999999 599995543210 0000 000100 12456789999999988776653
Q ss_pred ------CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCC
Q 010005 84 ------GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 84 ------~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
..|++||.||. ..+..+++.++++|+.++.++.+++. +.+-.++|++||.....
T Consensus 80 ~~~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~--------- 150 (259)
T d2ae2a_ 80 ANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGAL--------- 150 (259)
T ss_dssp HHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTS---------
T ss_pred HHHhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhccccccccccccccc---------
Confidence 37999999997 23345678899999999998888764 44556899999987641
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCC-----CchHHHHHHhcCCCceEEecCC
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT-----QLVPLLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~-----~~~~~l~~~~~~g~~~~i~g~g 218 (520)
+......|+.+|+..+.+.+.++.+ +|+++.++-||.+-.+... .-.....+......|
T Consensus 151 ------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~p------- 217 (259)
T d2ae2a_ 151 ------AVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCA------- 217 (259)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTST-------
T ss_pred ------ccccccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhhhchhhHHHHHHHHhcCC-------
Confidence 2223568999999999988776543 6899999999998654211 001112222222222
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..-+...+|+|++++.++- +......|+++.+.++-
T Consensus 218 --l~R~g~pedvA~~v~fL~S---~~s~~itG~~i~VDGG~ 253 (259)
T d2ae2a_ 218 --LRRMGEPKELAAMVAFLCF---PAASYVTGQIIYVDGGL 253 (259)
T ss_dssp --TCSCBCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTG
T ss_pred --CCCCcCHHHHHHHHHHHhC---chhCCCcCcEEEECCCe
Confidence 2235568999999998774 11345789999998764
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.63 E-value=3.5e-16 Score=149.64 Aligned_cols=224 Identities=13% Similarity=0.049 Sum_probs=152.3
Q ss_pred CCCCCCCCCeEEEEcCCC--hhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC-CCC-CCCCCCcEEEEecCCCHH
Q 010005 1 MPFDEAIPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL-LPD-SLSSGRAEYHQVDVRDIS 76 (520)
Q Consensus 1 m~~~~~~~~~ILVtGatG--fIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~-l~~-~~~~~~v~~~~~Dl~d~~ 76 (520)
|++-..++|++|||||+| -||++++++|.++| ++|.+.|+.. .... ..+ .....+...+.+|++|++
T Consensus 1 M~~~~L~gK~alITGas~~~GIG~aiA~~la~~G-a~V~i~~~~~--------~~~~~~~~~~~~~~~~~~~~~D~~~~~ 71 (256)
T d1ulua_ 1 MLTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAG-AEVALSYQAE--------RLRPEAEKLAEALGGALLFRADVTQDE 71 (256)
T ss_dssp CEEECCTTCEEEEESCCCSSSHHHHHHHHHHHTT-CEEEEEESSG--------GGHHHHHHHHHHTTCCEEEECCTTCHH
T ss_pred CCCcCCCCCEEEEECCCCCchHHHHHHHHHHHCC-CEEEEEeCcH--------HHHHHHHHhhhccCcccccccccCCHH
Confidence 555667889999999998 69999999999999 5898855432 1000 000 011235678999999998
Q ss_pred HHHHHHc-------CCCEEEEcccCC-----------CCCcchhhHHhhhHHHHHHHHHHHHHCC--CCEEEEeeccccc
Q 010005 77 QIKKVLE-------GASTVFYVDATD-----------LNTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVV 136 (520)
Q Consensus 77 ~l~~~l~-------~~D~Vih~aa~~-----------~~~~~~~~~~~~Nv~gt~~ll~aa~~~g--vkr~V~~SS~~vy 136 (520)
+++++++ +.|++||+|+.. ....++...+++|+.++..+.+++...- -.++|++||....
T Consensus 72 ~v~~~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~ 151 (256)
T d1ulua_ 72 ELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASE 151 (256)
T ss_dssp HHHHHHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGT
T ss_pred HHHHHHHHHHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhc
Confidence 8877764 579999999861 1223456689999999999998876541 2479999988764
Q ss_pred ccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCC--chHHHHHHhcCCCc
Q 010005 137 FDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKPGWT 211 (520)
Q Consensus 137 g~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~--~~~~l~~~~~~g~~ 211 (520)
. +......|+.+|+..+.+.+.++.+ +|+++.++.|+.+..+.... ......+...+..|
T Consensus 152 ~---------------~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~~~~~~~~~~~~~~p 216 (256)
T d1ulua_ 152 K---------------VVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAP 216 (256)
T ss_dssp S---------------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------CHHHHHHHHHHST
T ss_pred C---------------CCCCchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchhhhHHHHHHHHhcCC
Confidence 1 2234568999999999988776543 68999999999988764432 11233333322222
Q ss_pred eEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 212 KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 212 ~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
..-+...+|+|++++.++. +......|+.+.+.++..
T Consensus 217 ---------l~R~~~pedvA~~v~fL~S---~~s~~itG~~i~VDGG~~ 253 (256)
T d1ulua_ 217 ---------LRRNITQEEVGNLGLFLLS---PLASGITGEVVYVDAGYH 253 (256)
T ss_dssp ---------TSSCCCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTGG
T ss_pred ---------CCCCcCHHHHHHHHHHHhC---chhCCccCCeEEECcCEe
Confidence 1224568999999998875 112457899999988753
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=8.9e-16 Score=145.67 Aligned_cols=218 Identities=17% Similarity=0.080 Sum_probs=155.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
-++|++|||||++-||+++++.|+++| ++|++.|+. +. .+++.....++....+|+.+.+.++...+
T Consensus 4 l~gK~alITGas~GIG~aia~~la~~G-~~Vi~~~r~--------~~--~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 72 (245)
T d2ag5a1 4 LDGKVIILTAAAQGIGQAAALAFAREG-AKVIATDIN--------ES--KLQELEKYPGIQTRVLDVTKKKQIDQFANEV 72 (245)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESC--------HH--HHGGGGGSTTEEEEECCTTCHHHHHHHHHHC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCC--------HH--HHHHHHhccCCceeeeecccccccccccccc
Confidence 467999999999999999999999999 599996543 22 22222334578889999998876666554
Q ss_pred -CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCCCCCCcc
Q 010005 84 -GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDETLT 151 (520)
Q Consensus 84 -~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~~~E~~~ 151 (520)
+.|++||+||. ..+..+++..+++|+.++..+.+++.. .+-.++|++||...-- .
T Consensus 73 ~~id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~------------~- 139 (245)
T d2ag5a1 73 ERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSV------------K- 139 (245)
T ss_dssp SCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTT------------B-
T ss_pred ccceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhcc------------C-
Confidence 68999999998 224457788999999999999887754 3456899998864310 0
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCC------CchHHHHHHhcCCCceEEecCCCccc
Q 010005 152 CCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 152 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~------~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
+..+...|+.+|+..+.+.+.++.+ +|+++.++.||.+-.|... .....+.+.+.... +..
T Consensus 140 -~~~~~~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~---------pl~ 209 (245)
T d2ag5a1 140 -GVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQ---------KTG 209 (245)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTC---------TTS
T ss_pred -CccchhHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHhhhhhhhhhHHHHHHHHhcC---------CCC
Confidence 2234568999999999988877543 6899999999998765321 11111222222222 223
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
-+...+|+|+++..++. .......|+.+.+.++..
T Consensus 210 R~~~pedva~~v~fL~s---~~s~~iTG~~i~VDGG~s 244 (245)
T d2ag5a1 210 RFATAEEIAMLCVYLAS---DESAYVTGNPVIIDGGWS 244 (245)
T ss_dssp SCEEHHHHHHHHHHHHS---GGGTTCCSCEEEECTTGG
T ss_pred CCcCHHHHHHHHHHHhC---hhhCCCcCceEEeCCCcC
Confidence 35668999999998885 113457899999988653
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.62 E-value=4.9e-16 Score=148.16 Aligned_cols=218 Identities=16% Similarity=0.095 Sum_probs=149.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
.++|++|||||++-||.++++.|+++| ++|.+.|+ ++++ ..+.+.+ ..+...+.+|++|+++++++++
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G-a~V~~~~~--------~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~~~~~~~~ 73 (253)
T d1hxha_ 4 LQGKVALVTGGASGVGLEVVKLLLGEG-AKVAFSDI--------NEAAGQQLAAEL-GERSMFVRHDVSSEADWTLVMAA 73 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECS--------CHHHHHHHHHHH-CTTEEEECCCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEEC--------CHHHHHHHHHHh-CCCeEEEEeecCCHHHHHHHHHH
Confidence 467999999999999999999999999 59999554 3221 0111111 2456788999999988776664
Q ss_pred ------CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHHHC---CCCEEEEeecccccccCCCCCCCCC
Q 010005 84 ------GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 ------~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~~~---gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
+.|++||+||. ..+..+++..+++|+.++.++.+++... +-.++|++||.....
T Consensus 74 ~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~---------- 143 (253)
T d1hxha_ 74 VQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWL---------- 143 (253)
T ss_dssp HHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS----------
T ss_pred HHHHhCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhc----------
Confidence 58999999997 2234567889999999999888877542 226899999987641
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC-----CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEE---ecCCC
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI-----DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFI---IGSGE 219 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i---~g~g~ 219 (520)
+......|+.+|+..+.+.+.++.+ +++++.++-||.+..+.. . .....+..... ...-.
T Consensus 144 -----~~~~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~----~---~~~~~~~~~~~~~~~~~~~ 211 (253)
T d1hxha_ 144 -----PIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMM----Q---ASLPKGVSKEMVLHDPKLN 211 (253)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHH----H---HHSCTTCCHHHHBCBTTTB
T ss_pred -----CccccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhH----H---hhCcchhhHHHHHhCcccc
Confidence 2233468999999999888766533 469999999998865421 0 01100000000 00001
Q ss_pred cccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
..-.+...+|+|++++.++- +......|+.+++.++
T Consensus 212 ~~gr~~~pedvA~~v~fL~S---~~s~~itG~~i~VDGG 247 (253)
T d1hxha_ 212 RAGRAYMPERIAQLVLFLAS---DESSVMSGSELHADNS 247 (253)
T ss_dssp TTCCEECHHHHHHHHHHHHS---GGGTTCCSCEEEESSS
T ss_pred ccCCCCCHHHHHHHHHHHhC---hhhCCCcCcEEEECcc
Confidence 11235668999999998874 1134578999999775
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.62 E-value=1e-15 Score=146.64 Aligned_cols=219 Identities=16% Similarity=0.113 Sum_probs=151.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc---
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--- 83 (520)
++|++|||||++-||.++++.|.++| ++|.+.|+.... +.. ....+.+ ...++..+.+|++|+++++++++
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~-l~~--~~~~~~~--~g~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEEG-TAIALLDMNREA-LEK--AEASVRE--KGVEARSYVCDVTSEEAVIGTVDSVV 77 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHH--HHHHHHT--TTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH-HHH--HHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 57999999999999999999999999 599996653210 000 0001111 13467889999999988877764
Q ss_pred ----CCCEEEEcccCC--------CCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 ----GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 ----~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
+.|++||.||.. .+..+++..+++|+.++.++.+++.. .+-.++|++||...+.
T Consensus 78 ~~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~---------- 147 (260)
T d1zema1 78 RDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVK---------- 147 (260)
T ss_dssp HHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHS----------
T ss_pred HHhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhcc----------
Confidence 589999999862 23356778999999999998888743 3456999999987652
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCC----------------CchHHHHHHhcC
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT----------------QLVPLLVNLAKP 208 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~----------------~~~~~l~~~~~~ 208 (520)
+......|+.+|+..+.+.+.++.+ +|+++.++-||.|-.+... .......+.+..
T Consensus 148 -----~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (260)
T d1zema1 148 -----GPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIG 222 (260)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHH
T ss_pred -----CCcchHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHHHHHh
Confidence 1123468999999999887776533 6899999999998755211 011112222222
Q ss_pred CCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 209 GWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 209 g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
..| +.-+...+|+|.+++.++- +......|+++.+.++
T Consensus 223 ~~P---------l~R~g~pedvA~~v~fL~S---~~s~~itG~~i~VDGG 260 (260)
T d1zema1 223 SVP---------MRRYGDINEIPGVVAFLLG---DDSSFMTGVNLPIAGG 260 (260)
T ss_dssp TST---------TSSCBCGGGSHHHHHHHHS---GGGTTCCSCEEEESCC
T ss_pred cCC---------CCCCcCHHHHHHHHHHHhC---chhcCccCCeEEeCCC
Confidence 211 2235568999999998874 1134567888888764
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=7.3e-16 Score=150.39 Aligned_cols=226 Identities=12% Similarity=0.076 Sum_probs=152.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCC---CCCCCCcEEEEecCCCHHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD---SLSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~---~~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
-++|++|||||++-||.++++.|.++| ++|++.|+.... +. ....++.. .....++..+.+|++|++++.+++
T Consensus 10 L~gKvalITGas~GIG~aia~~la~~G-a~Vvi~~r~~~~-l~--~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~ 85 (297)
T d1yxma1 10 LQGQVAIVTGGATGIGKAIVKELLELG-SNVVIASRKLER-LK--SAADELQANLPPTKQARVIPIQCNIRNEEEVNNLV 85 (297)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HH--HHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH-HH--HHHHHHHhhhccccCceEEEEeccCCCHHHHHHHH
Confidence 468999999999999999999999999 599996553210 00 00001111 112346888999999999888776
Q ss_pred c-------CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCC
Q 010005 83 E-------GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 83 ~-------~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~ 144 (520)
+ +.|++||.|+. .....+++..+++|+.++..+.+++.. .+-.++|.+||....
T Consensus 86 ~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~~~-------- 157 (297)
T d1yxma1 86 KSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKA-------- 157 (297)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTT--------
T ss_pred HHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccccccccccccccc--------
Confidence 4 58999999987 133457788999999999999888753 334578887765432
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcc
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (520)
.......|+.+|+..+.+.+.++.+ +|+++.++.||.+..+.........-........ ...+.
T Consensus 158 --------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~-----~~~pl 224 (297)
T d1yxma1 158 --------GFPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSF-----QKIPA 224 (297)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGG-----GGSTT
T ss_pred --------cccccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhhccccCHHHHHHHH-----hcCCC
Confidence 1123468999999999888776543 6899999999999765421111100001111100 00112
Q ss_pred cccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.-+...+|+|.+++.++- .......|+++.+.++.
T Consensus 225 gR~g~pedvA~~v~fL~S---d~s~~iTG~~i~VDGG~ 259 (297)
T d1yxma1 225 KRIGVPEEVSSVVCFLLS---PAASFITGQSVDVDGGR 259 (297)
T ss_dssp SSCBCTHHHHHHHHHHHS---GGGTTCCSCEEEESTTG
T ss_pred CCCcCHHHHHHHHHHHhC---chhcCcCCcEEEeCcCh
Confidence 235568999999998884 11345789999998875
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.61 E-value=8.8e-16 Score=146.64 Aligned_cols=228 Identities=16% Similarity=0.128 Sum_probs=149.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc-----
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE----- 83 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~----- 83 (520)
|.+|||||++-||++++++|.++| ++|.+.|+.... +.. ....+.+ ...++..+.+|++|++++.++++
T Consensus 2 KValITGas~GIG~aia~~la~~G-a~V~~~~r~~~~-l~~--~~~~i~~--~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDG-FAVAIADYNDAT-AKA--VASEINQ--AGGHAVAVKVDVSDRDQVFAAVEQARKT 75 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHH--HHHHHHH--TTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CEEEEcCCccHHHHHHHHHHHHCC-CEEEEEECCHHH-HHH--HHHHHHh--cCCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 346999999999999999999999 599995543210 000 0001111 12467889999999998887764
Q ss_pred --CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHH----HCC-CCEEEEeecccccccCCCCCCCCCCC
Q 010005 84 --GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACR----ECK-VRRLVYNSTADVVFDGSHDIHNGDET 149 (520)
Q Consensus 84 --~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~----~~g-vkr~V~~SS~~vyg~~~~~~~~~~E~ 149 (520)
+.|++||+||. ..+..+++..+++|+.|+.++.+++. +.+ -.++|++||...+.
T Consensus 76 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~------------ 143 (255)
T d1gega_ 76 LGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV------------ 143 (255)
T ss_dssp TTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS------------
T ss_pred hCCccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcc------------
Confidence 58999999997 23445678899999999999988763 333 45799999987641
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCc--eEEecCCCccccc
Q 010005 150 LTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT--KFIIGSGENMSDF 224 (520)
Q Consensus 150 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~--~~i~g~g~~~~~~ 224 (520)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+-.|.................. ........+..-+
T Consensus 144 ---~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~R~ 220 (255)
T d1gega_ 144 ---GNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITLGRL 220 (255)
T ss_dssp ---CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTCTTCSC
T ss_pred ---cCcccccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccChHHhhhhhhhHhhhcccchhHHHHHHhcCCCCCC
Confidence 222346899999999988777653 37999999999988644211111111111000000 0000011122335
Q ss_pred ccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 225 i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
...+|+|++++.++- .......|+.+.+.++-.
T Consensus 221 ~~peevA~~v~fL~S---~~a~~itG~~i~vDGG~~ 253 (255)
T d1gega_ 221 SEPEDVAACVSYLAS---PDSDYMTGQSLLIDGGMV 253 (255)
T ss_dssp BCHHHHHHHHHHHHS---GGGTTCCSCEEEESSSSS
T ss_pred cCHHHHHHHHHHHhC---chhCCccCcEEEecCCEE
Confidence 679999999998874 113457899999988753
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=2.1e-14 Score=140.12 Aligned_cols=251 Identities=14% Similarity=0.104 Sum_probs=166.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccc-cCCCCCC-CCCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQ-LDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~-l~r~~~~-~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
-++|++|||||++-||+++++.|.++| ++|++.|+..... ..|.... ....+.. ........+|+.|.++.+++++
T Consensus 5 l~gKvalITGas~GIG~aiA~~la~~G-a~Vvi~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~v~ 82 (302)
T d1gz6a_ 5 FDGRVVLVTGAGGGLGRAYALAFAERG-ALVVVNDLGGDFKGVGKGSSAADKVVEEI-RRRGGKAVANYDSVEAGEKLVK 82 (302)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECCCBCTTSCBCCSHHHHHHHHHH-HHTTCEEEEECCCGGGHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCchhhhhhhhHHHHHHHHHHH-hhcccccccccchHHHHHHHHH
Confidence 357999999999999999999999999 6999977654210 1111110 0000000 1234567789988776655543
Q ss_pred -------CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCC
Q 010005 84 -------GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 -------~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
+.|++||.||. .....+++..+++|+.|+.++.+++. +.+-.++|++||.....
T Consensus 83 ~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~~-------- 154 (302)
T d1gz6a_ 83 TALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIY-------- 154 (302)
T ss_dssp HHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH--------
T ss_pred HHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhcC--------
Confidence 58999999998 23445778899999999999888864 44556999999987652
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
+......|+.+|+..+.+.+.++. .+|+++.++-|+.+-.+.....- +...
T Consensus 155 -------~~~~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~~~~~~~-------------------~~~~ 208 (302)
T d1gz6a_ 155 -------GNFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMTETVMP-------------------EDLV 208 (302)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTTTGGGSC-------------------HHHH
T ss_pred -------CCCCcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcchhhcCc-------------------HhhH
Confidence 122356899999999988777653 36899999999865322111111 1122
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC-------------------CCcCHHHHHHHHHHHcCCCCCcccC
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL-------------------EPIKFWDFLSIILEGLGYQRPFIKL 283 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~-------------------~~~t~~el~~~i~~~~g~~~~~v~~ 283 (520)
.++..+|+|.+++.++. +.....|+++.+.++ ++.|..++++.+.+....+.. ..
T Consensus 209 ~~~~PedvA~~v~fL~S----~~a~itG~~i~vdGG~~~~~~~~~~~g~~~~~~~~~~t~e~i~~~~~~i~d~~~~--~~ 282 (302)
T d1gz6a_ 209 EALKPEYVAPLVLWLCH----ESCEENGGLFEVGAGWIGKLRWERTLGAIVRKRNQPMTPEAVRDNWVKICDFSNA--SK 282 (302)
T ss_dssp HHSCGGGTHHHHHHHTS----TTCCCCSCEEEEETTEEEEEEEEECCCEECCBTTBCCCHHHHHHTHHHHTCCTTC--BC
T ss_pred hcCCHHHHHHHHHHHcC----CCcCCCCcEEEeCCCceeEEEEeecCcccccCCCCCCCHHHHHHHHHHHhCcccC--cC
Confidence 34457999999987763 123467777776544 346788888888888766543 33
Q ss_pred ChHHHHHHHHHHHHH
Q 010005 284 PTGVVWYIILLVKWI 298 (520)
Q Consensus 284 p~~~~~~~~~~~~~~ 298 (520)
|.........+.+.+
T Consensus 283 p~~~~~~~~~~~~~~ 297 (302)
T d1gz6a_ 283 PKSIQESTGGIIEVL 297 (302)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 444444444444443
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=2.3e-15 Score=143.86 Aligned_cols=204 Identities=12% Similarity=0.015 Sum_probs=139.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++|.+|||||++-||.++++.|.++| ++|++.|+.... +..- ...+.......++..+.+|++|++++.++++
T Consensus 8 lk~Kv~lITGas~GIG~aiA~~la~~G-~~Vv~~~r~~~~-l~~~--~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~ 83 (257)
T d1xg5a_ 8 WRDRLALVTGASGGIGAAVARALVQQG-LKVVGCARTVGN-IEEL--AAECKSAGYPGTLIPYRCDLSNEEDILSMFSAI 83 (257)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH-HHHH--HHHHHhcCCCceEEEEEccCCCHHHHHHHHHHH
Confidence 357899999999999999999999999 599995543210 0000 0111111123467789999999988877664
Q ss_pred -----CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHH----HHCC--CCEEEEeecccccccCCCCCCC
Q 010005 84 -----GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTAC----RECK--VRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 -----~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa----~~~g--vkr~V~~SS~~vyg~~~~~~~~ 145 (520)
+.|++||+|+. ..+..++...+++|+.++.++.+++ ++.+ -.++|++||.+.+...
T Consensus 84 ~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~------ 157 (257)
T d1xg5a_ 84 RSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVL------ 157 (257)
T ss_dssp HHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCC------
T ss_pred HHhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCCC------
Confidence 58999999988 2345677889999999998877765 3444 3589999998764110
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhc-----CCCCceEEEEecCccccCCCC----CchHHHHHHhcCCCceEEec
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFAN-----NIDGLLTCALRPSNVFGPGDT----QLVPLLVNLAKPGWTKFIIG 216 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~-----~~~gi~~~ilRp~~vyGp~~~----~~~~~l~~~~~~g~~~~i~g 216 (520)
|......|+.+|+..+.+.+.++ ..+|+++.++-|+.+=.+... ..........
T Consensus 158 -------p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~~~~~~~~~~~~~~---------- 220 (257)
T d1xg5a_ 158 -------PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATY---------- 220 (257)
T ss_dssp -------SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCHHHHHHHH----------
T ss_pred -------CCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhhcChhhHHHHHhcC----------
Confidence 22334579999999999987665 347899999999876543210 1111111111
Q ss_pred CCCcccccccHHHHHHHHHHHHH
Q 010005 217 SGENMSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~ 239 (520)
....+...+|+|++++.++.
T Consensus 221 ---~~~r~~~pedvA~~v~fL~s 240 (257)
T d1xg5a_ 221 ---EQMKCLKPEDVAEAVIYVLS 240 (257)
T ss_dssp ---C---CBCHHHHHHHHHHHHH
T ss_pred ---CCCCCcCHHHHHHHHHHHhC
Confidence 12345679999999998886
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.57 E-value=7.3e-15 Score=140.94 Aligned_cols=224 Identities=9% Similarity=0.054 Sum_probs=144.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC-CCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS-LSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~-~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
++|.+|||||++-||++++++|+++| .+|.+.|+.... +.. ....+... ....++..+.+|++|+++++++++
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~-l~~--~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~ 79 (264)
T d1spxa_ 4 AEKVAIITGSSNGIGRATAVLFAREG-AKVTITGRHAER-LEE--TRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTT 79 (264)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHH--HHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCC-CEEEEEECCHHH-HHH--HHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHH
Confidence 57899999999999999999999999 599995543210 000 00001000 122358899999999988887764
Q ss_pred -----CCCEEEEcccCC-----------CCCcchhhHHhhhHHHHHHHHHHHHHC---CCCEEEEeecccc-cccCCCCC
Q 010005 84 -----GASTVFYVDATD-----------LNTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADV-VFDGSHDI 143 (520)
Q Consensus 84 -----~~D~Vih~aa~~-----------~~~~~~~~~~~~Nv~gt~~ll~aa~~~---gvkr~V~~SS~~v-yg~~~~~~ 143 (520)
+.|++||+||.. .+..+++..+++|+.++.++.+++... +-.++|.++|... +.
T Consensus 80 ~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~~~~~~------ 153 (264)
T d1spxa_ 80 LGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLH------ 153 (264)
T ss_dssp HHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSSS------
T ss_pred HHHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccCcceeeeeeccccc------
Confidence 589999999861 122457789999999999988887542 1235565555432 20
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCc---------hHHHHHHhcCCCc
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL---------VPLLVNLAKPGWT 211 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~---------~~~l~~~~~~g~~ 211 (520)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+-.+..... ............
T Consensus 154 ---------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~- 223 (264)
T d1spxa_ 154 ---------ATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECV- 223 (264)
T ss_dssp ---------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHC-
T ss_pred ---------cCCCchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHHHhcC-
Confidence 112245799999999988777653 3689999999999876532210 011111111111
Q ss_pred eEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 212 KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 212 ~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
+..-+...+|+|++++.++... ......|+.+.+.++..
T Consensus 224 --------Pl~R~g~pedvA~~v~fL~S~~--~s~~itG~~i~vDGG~s 262 (264)
T d1spxa_ 224 --------PAGVMGQPQDIAEVIAFLADRK--TSSYIIGHQLVVDGGSS 262 (264)
T ss_dssp --------TTSSCBCHHHHHHHHHHHHCHH--HHTTCCSCEEEESTTGG
T ss_pred --------CCCCCcCHHHHHHHHHHHhCCc--ccCCccCceEEeCCChh
Confidence 1223556899999999877310 01347899999987653
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.57 E-value=5.8e-15 Score=142.37 Aligned_cols=223 Identities=11% Similarity=0.081 Sum_probs=149.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC-CCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS-LSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~-~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
++|+++||||++-||+++++.|.++| .+|++.|+.... +..- ...+.+. ....++..+.+|++|+++++++++
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~-l~~~--~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (274)
T d1xhla_ 3 SGKSVIITGSSNGIGRSAAVIFAKEG-AQVTITGRNEDR-LEET--KQQILKAGVPAEKINAVVADVTEASGQDDIINTT 78 (274)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHH-HHHH--HHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHH
Confidence 57999999999999999999999999 599996553210 0000 0001111 112357899999999988877664
Q ss_pred -----CCCEEEEcccCC--C-------CCcchhhHHhhhHHHHHHHHHHHHH----CCCCEEEEeecccccccCCCCCCC
Q 010005 84 -----GASTVFYVDATD--L-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 -----~~D~Vih~aa~~--~-------~~~~~~~~~~~Nv~gt~~ll~aa~~----~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
+.|++||+||.. . ...+++..+++|+.++..+.+++.. .+-.+++++||.....
T Consensus 79 ~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~-------- 150 (274)
T d1xhla_ 79 LAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQ-------- 150 (274)
T ss_dssp HHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSS--------
T ss_pred HHHcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhccc--------
Confidence 589999999861 1 2235778999999999988888754 4455788887765431
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCC-----C----chHHHHHHhcCCCceE
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDT-----Q----LVPLLVNLAKPGWTKF 213 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~-----~----~~~~l~~~~~~g~~~~ 213 (520)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+-.|... . -...+........|
T Consensus 151 -------~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~iP-- 221 (274)
T d1xhla_ 151 -------AHSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIP-- 221 (274)
T ss_dssp -------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCT--
T ss_pred -------cCCCCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhcccchhhHHHHHHHHHHHcCCC--
Confidence 112345799999999988776543 36899999999999755211 0 01111222122111
Q ss_pred EecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 214 i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..-+...+|+|.+++.++-.- ......|+.+.+.++.
T Consensus 222 -------lgR~g~pediA~~v~fL~S~d--~s~~itG~~i~vDGG~ 258 (274)
T d1xhla_ 222 -------VGHCGKPEEIANIIVFLADRN--LSSYIIGQSIVADGGS 258 (274)
T ss_dssp -------TSSCBCHHHHHHHHHHHHCHH--HHTTCCSCEEEESTTG
T ss_pred -------CCCCcCHHHHHHHHHHHcCCc--cccCccCcEEEeCcCH
Confidence 223556999999999887300 0234789999998875
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.57 E-value=1.1e-14 Score=138.74 Aligned_cols=219 Identities=12% Similarity=0.035 Sum_probs=147.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCC-CHHHHHHHHc-
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVR-DISQIKKVLE- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~-d~~~l~~~l~- 83 (520)
.++|+||||||++-||..++++|+++| .+|+++++.. .+......+.......++.++.+|+. +.++++++++
T Consensus 3 l~gK~vlITGgs~GIG~~~A~~la~~G-~~vii~~r~~----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 77 (254)
T d1sbya1 3 LTNKNVIFVAALGGIGLDTSRELVKRN-LKNFVILDRV----ENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKK 77 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTC-CSEEEEEESS----CCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCC-CEEEEEECCc----ccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHH
Confidence 467999999999999999999999999 4776643211 01000011112223447888999997 5555655543
Q ss_pred ------CCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHC-------CCCEEEEeecccccccCCCCCCCCCCCc
Q 010005 84 ------GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC-------KVRRLVYNSTADVVFDGSHDIHNGDETL 150 (520)
Q Consensus 84 ------~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-------gvkr~V~~SS~~vyg~~~~~~~~~~E~~ 150 (520)
++|++||+||.. ...+++.++++|+.|+.++.+++... +-.++|++||...+.
T Consensus 78 ~~~~~g~iDilvnnAG~~-~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~------------- 143 (254)
T d1sbya1 78 IFDQLKTVDILINGAGIL-DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN------------- 143 (254)
T ss_dssp HHHHHSCCCEEEECCCCC-CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS-------------
T ss_pred HHHHcCCCCEEEeCCCCC-CHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhcc-------------
Confidence 589999999973 34778999999999999998887542 135799999987752
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceE-EecCCCccccccc
Q 010005 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKF-IIGSGENMSDFTY 226 (520)
Q Consensus 151 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~-i~g~g~~~~~~i~ 226 (520)
+......|+.+|+....+.+.++.+ +|+++.++-||.|..+- .+......... ........+....
T Consensus 144 --~~~~~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (254)
T d1sbya1 144 --AIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPL--------VHTFNSWLDVEPRVAELLLSHPTQT 213 (254)
T ss_dssp --CCTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHH--------HHSCCCGGGSCTTHHHHHTTSCCEE
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCcc--------ccccccchhHHHHHHhccccCCCCC
Confidence 2233568999999999888877644 58999999999997641 11111000000 0000001123345
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 227 v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.+++|++++.+++ ....|+++.+.++.
T Consensus 214 ~e~va~~~~~~~~------~~~tG~vi~vdgG~ 240 (254)
T d1sbya1 214 SEQCGQNFVKAIE------ANKNGAIWKLDLGT 240 (254)
T ss_dssp HHHHHHHHHHHHH------HCCTTCEEEEETTE
T ss_pred HHHHHHHHHHhhh------CCCCCCEEEECCCE
Confidence 8999999988887 34688899998863
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.56 E-value=2.1e-14 Score=137.23 Aligned_cols=196 Identities=21% Similarity=0.158 Sum_probs=139.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCC---CC--CCCCcEEEEecCCCHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPD---SL--SSGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~---~~--~~~~v~~~~~Dl~d~~~l~~ 80 (520)
++.+||||||+|-||.+++++|.++|..+|++ +.|+.... ...+ .+ ...++.++.+|++|.+++.+
T Consensus 8 p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl--------~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~ 79 (259)
T d2fr1a1 8 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLL--------VSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRE 79 (259)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEE--------EESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHH
T ss_pred CcCEEEEECCCcHHHHHHHHHHHHCCCCEEEE--------EeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHH
Confidence 35799999999999999999999999535666 44442210 1110 01 13468899999999999998
Q ss_pred HHcC------CCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccccCCCCCCCCC
Q 010005 81 VLEG------ASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 81 ~l~~------~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
+++. .|.|||+++.. ....+....+++|+.++.++.++++..+..++|++||.....
T Consensus 80 ~~~~i~~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~iv~~SS~a~~~---------- 149 (259)
T d2fr1a1 80 LLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAF---------- 149 (259)
T ss_dssp HHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHT----------
T ss_pred hhccccccccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCceEeeecchhhcc----------
Confidence 8763 68999999981 223445668899999999999999888888999999988752
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccccccH
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v 227 (520)
+......|+.+|...|.+.+.+.. .|++++++.||.+.+++... ....+.... .-...+..
T Consensus 150 -----g~~~~~~YaAaka~l~~la~~~~~-~Gi~v~~I~pg~~~~~g~~~--~~~~~~~~~-----------~G~~~~~~ 210 (259)
T d2fr1a1 150 -----GAPGLGGYAPGNAYLDGLAQQRRS-DGLPATAVAWGTWAGSGMAE--GPVADRFRR-----------HGVIEMPP 210 (259)
T ss_dssp -----CCTTCTTTHHHHHHHHHHHHHHHH-TTCCCEEEEECCBC--------------CTT-----------TTEECBCH
T ss_pred -----CCcccHHHHHHHHhHHHHHHHHHh-CCCCEEECCCCcccCCcccc--chHHHHHHh-----------cCCCCCCH
Confidence 122356799999999999888765 79999999999988765311 011111111 11234568
Q ss_pred HHHHHHHHHHHH
Q 010005 228 ENVAHAHVCAAE 239 (520)
Q Consensus 228 ~Dva~ai~~~~~ 239 (520)
+++++++..++.
T Consensus 211 ~~~~~~l~~~l~ 222 (259)
T d2fr1a1 211 ETACRALQNALD 222 (259)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988887
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.56 E-value=1.2e-14 Score=140.15 Aligned_cols=214 Identities=16% Similarity=0.099 Sum_probs=146.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCcEEEEecCCCHHHHHHHHc-
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
++|++|||||++-||+++++.|.++| ++|.+.|+.. + .+.+.. ...++..+.+|++|.++++++++
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~--------~--~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~ 72 (276)
T d1bdba_ 4 KGEAVLITGGASGLGRALVDRFVAEG-AKVAVLDKSA--------E--RLAELETDHGDNVLGIVGDVRSLEDQKQAASR 72 (276)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCH--------H--HHHHHHHHHGGGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCH--------H--HHHHHHHHcCCCeeEEecccccHHHHHHHHHH
Confidence 57999999999999999999999999 5999965432 2 111100 12457889999999988777664
Q ss_pred ------CCCEEEEcccCCC--------CC----cchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCC
Q 010005 84 ------GASTVFYVDATDL--------NT----DDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSH 141 (520)
Q Consensus 84 ------~~D~Vih~aa~~~--------~~----~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~ 141 (520)
++|++||.||... .. .+++..+++|+.++.++.+++. +.+ .++|++||...+-
T Consensus 73 ~~~~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-g~iI~i~S~~~~~---- 147 (276)
T d1bdba_ 73 CVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR-GNVIFTISNAGFY---- 147 (276)
T ss_dssp HHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTS----
T ss_pred HHHHhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC-CCceeeeechhcc----
Confidence 5899999998611 01 1367889999999988887764 334 4788888875531
Q ss_pred CCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC--CCceEEEEecCccccCCCCCc----------hHHHHHHhcCC
Q 010005 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI--DGLLTCALRPSNVFGPGDTQL----------VPLLVNLAKPG 209 (520)
Q Consensus 142 ~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~--~gi~~~ilRp~~vyGp~~~~~----------~~~l~~~~~~g 209 (520)
+......|+.+|+..+.+.+.++.+ .++++.++.||.|-.+-.... .+.+.+.+...
T Consensus 148 -----------~~~~~~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (276)
T d1bdba_ 148 -----------PNGGGPLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSV 216 (276)
T ss_dssp -----------TTSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSCCCCCGGGC---------CHHHHHTTT
T ss_pred -----------CCCCCchHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHHhc
Confidence 1123467999999999887766432 249999999999865532111 11122233332
Q ss_pred CceEEecCCCcccccccHHHHHHHHHHHH-HhhhcccccCCCceEEEeCCC
Q 010005 210 WTKFIIGSGENMSDFTYVENVAHAHVCAA-EALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 210 ~~~~i~g~g~~~~~~i~v~Dva~ai~~~~-~~~~~~~~~~~g~~yni~~~~ 259 (520)
.| ..-+...+|+|.+++.++ +. ......|+.+++.++-
T Consensus 217 ~P---------lgR~g~peeva~~v~fL~S~~---~a~~itG~~i~VDGG~ 255 (276)
T d1bdba_ 217 LP---------IGRMPEVEEYTGAYVFFATRG---DAAPATGALLNYDGGL 255 (276)
T ss_dssp CT---------TSSCCCGGGGSHHHHHHHCHH---HHTTCSSCEEEESSSG
T ss_pred CC---------CCCCcCHHHHHHHHHHHcCCc---ccCCeeCcEEEECcCh
Confidence 22 222455899999998765 20 0245789999998864
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.55 E-value=1.3e-14 Score=139.84 Aligned_cols=224 Identities=12% Similarity=0.064 Sum_probs=145.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC-CCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS-LSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~-~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
++|++|||||++-||+++++.|.++| ++|++.|+.... +.. ....+.+. ....++..+.+|++|+++++++++
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~G-a~V~l~~r~~~~-l~~--~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 79 (272)
T d1xkqa_ 4 SNKTVIITGSSNGIGRTTAILFAQEG-ANVTITGRSSER-LEE--TRQIILKSGVSEKQVNSVVADVTTEDGQDQIINST 79 (272)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHH--HHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcHHHHHHHHHHHHCC-CEEEEEECCHHH-HHH--HHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHH
Confidence 57999999999999999999999999 599996543210 000 00011111 122357889999999988877764
Q ss_pred -----CCCEEEEcccCCCC-----------CcchhhHHhhhHHHHHHHHHHHHHC---CCCEEEEeec-ccccccCCCCC
Q 010005 84 -----GASTVFYVDATDLN-----------TDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNST-ADVVFDGSHDI 143 (520)
Q Consensus 84 -----~~D~Vih~aa~~~~-----------~~~~~~~~~~Nv~gt~~ll~aa~~~---gvkr~V~~SS-~~vyg~~~~~~ 143 (520)
+.|++||+||.... ..++...+++|+.++.++.+++... +-.+.|.++| .+...
T Consensus 80 ~~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~Ss~a~~~------ 153 (272)
T d1xkqa_ 80 LKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQ------ 153 (272)
T ss_dssp HHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSS------
T ss_pred HHHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccchhcccc------
Confidence 58999999987211 1136778899999999998887542 2235555554 33220
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCC------CchH---HHHHHhcCCCc
Q 010005 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDT------QLVP---LLVNLAKPGWT 211 (520)
Q Consensus 144 ~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~------~~~~---~l~~~~~~g~~ 211 (520)
+......|+.+|+..+.+.+.++. .+|+++.++-||.|-.+... .... ..........
T Consensus 154 ---------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~- 223 (272)
T d1xkqa_ 154 ---------AQPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECI- 223 (272)
T ss_dssp ---------CCCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTC-
T ss_pred ---------CCCCcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCchHHHHHHHHHHHHHhcCC-
Confidence 112346799999999988777653 37999999999998654211 0011 1111111111
Q ss_pred eEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 212 KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 212 ~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
+..-+...+|+|++++.++-.- ......|+++.+.++..
T Consensus 224 --------PlgR~g~pediA~~v~fL~S~~--as~~iTG~~i~vDGG~~ 262 (272)
T d1xkqa_ 224 --------PIGAAGKPEHIANIILFLADRN--LSFYILGQSIVADGGTS 262 (272)
T ss_dssp --------TTSSCBCHHHHHHHHHHHHCHH--HHTTCCSCEEEESTTGG
T ss_pred --------CCCCCcCHHHHHHHHHHHhCcc--hhCCccCeEEEeCcCHH
Confidence 1223556999999999887300 01237899999988754
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.55 E-value=1.2e-14 Score=139.06 Aligned_cols=220 Identities=13% Similarity=0.102 Sum_probs=149.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHHH
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
|-.+|++|||||+|-||.++++.|+++| ++|++.+. |+... ....+.+ ...++..+.+|++|++++++.
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G-~~Vvi~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~ 74 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRG-ASVVVNYG-------SSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVAL 74 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEES-------SCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEcC-------CChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHH
Confidence 3457999999999999999999999999 58877432 22110 0000111 124678899999999888776
Q ss_pred Hc-------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHCC--CCEEEEeecccc-cccCCCCCC
Q 010005 82 LE-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADV-VFDGSHDIH 144 (520)
Q Consensus 82 l~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~g--vkr~V~~SS~~v-yg~~~~~~~ 144 (520)
++ +.|++||+||.. .....++..+++|+.+..++.+++..+= -.+.+.++|... ..
T Consensus 75 ~~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~~------- 147 (259)
T d1ja9a_ 75 FDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMT------- 147 (259)
T ss_dssp HHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCC-------
T ss_pred HHHHHHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccccccccc-------
Confidence 65 579999999982 3345677899999999999999987641 235666655432 21
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCC-------------CCCchHHHHHHhcC
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPG-------------DTQLVPLLVNLAKP 208 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~-------------~~~~~~~l~~~~~~ 208 (520)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+-.+. .......+.+.+.+
T Consensus 148 --------~~~~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (259)
T d1ja9a_ 148 --------GIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLAN 219 (259)
T ss_dssp --------SCCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHH
T ss_pred --------CCCCchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhhhhhcccCCHHHHHHHHHh
Confidence 112345799999999988777654 368999999999986431 00112223333333
Q ss_pred CCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 209 GWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 209 g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..| ..-+...+|+|++++.++.. ......|+.+.+.++.
T Consensus 220 ~~p---------l~R~g~p~eVa~~v~fL~S~---~a~~itG~~i~vDGG~ 258 (259)
T d1ja9a_ 220 MNP---------LKRIGYPADIGRAVSALCQE---ESEWINGQVIKLTGGG 258 (259)
T ss_dssp TST---------TSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTC
T ss_pred CCC---------CCCCcCHHHHHHHHHHHhCc---hhcCCcCceEEeCCCC
Confidence 222 23466799999999988851 1244788999988764
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.55 E-value=3e-14 Score=135.42 Aligned_cols=211 Identities=15% Similarity=0.039 Sum_probs=135.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
++|+||||||++-||.+++++|+++|+ +.|++ ..|+.++. .+. .....++.++.+|++|.++++++++
T Consensus 2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~--------~~R~~~~~~~l~-~~~~~~~~~~~~Dvs~~~~v~~~~~~ 72 (250)
T d1yo6a1 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIA--------TARDVEKATELK-SIKDSRVHVLPLTVTCDKSLDTFVSK 72 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEE--------EESSGGGCHHHH-TCCCTTEEEEECCTTCHHHHHHHHHH
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEE--------EeCCHHHHHHHH-HhhCCceEEEEEecCCHHHHHHHHHH
Confidence 458999999999999999999999995 35776 34443311 111 1234578999999999987776653
Q ss_pred --------CCCEEEEcccCC--------CCCcchhhHHhhhHHHHHHHHHHHHH----C-----------CCCEEEEeec
Q 010005 84 --------GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTACRE----C-----------KVRRLVYNST 132 (520)
Q Consensus 84 --------~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~-----------gvkr~V~~SS 132 (520)
+.|++||+||.. ....+++..+++|+.|+.++.+++.. . ...+++.+|+
T Consensus 73 i~~~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~ 152 (250)
T d1yo6a1 73 VGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISS 152 (250)
T ss_dssp HHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECC
T ss_pred HHHHhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceecccccccc
Confidence 389999999971 11224667999999999998887642 1 1246777777
Q ss_pred ccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCC
Q 010005 133 ADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPG 209 (520)
Q Consensus 133 ~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g 209 (520)
...+..... . . .+..+...|+.||+....+.+.++. ..|+++.++-||.|--+-. +
T Consensus 153 ~~~~~~~~~-----~-~--~~~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T~m~-------------~ 211 (250)
T d1yo6a1 153 GLGSITDNT-----S-G--SAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLG-------------G 211 (250)
T ss_dssp GGGCSTTCC-----S-T--TSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC-------------------
T ss_pred ccccccCCc-----c-c--ccchhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCCCCC-------------C
Confidence 655421111 0 0 1233455799999999888777653 3689999999998753210 0
Q ss_pred CceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCcC
Q 010005 210 WTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (520)
Q Consensus 210 ~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~t 262 (520)
. . ..+..++.++.++..++.+ .+...|+.|+ -+++|+.
T Consensus 212 ~--------~---~~~~~e~~a~~~~~~~~~~---~~~~sG~f~~-~~g~p~~ 249 (250)
T d1yo6a1 212 K--------N---AALTVEQSTAELISSFNKL---DNSHNGRFFM-RNLKPYE 249 (250)
T ss_dssp ------------------HHHHHHHHHHHTTC---CGGGTTCEEE-TTEEECC
T ss_pred C--------C---CCCCHHHHHHHHHHHHhcC---CCCCCeEEEC-CCCeeCC
Confidence 0 0 1234688888888777643 2345566544 3445443
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.55 E-value=2.6e-14 Score=134.89 Aligned_cols=189 Identities=12% Similarity=0.181 Sum_probs=136.0
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCCc------EEEEecCCcccccCCCCCC-CCCCCCC--CCCCcEEEEecCCCHHHHHH
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGKC------IVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~~------~V~~~D~~~~~~l~r~~~~-~~l~~~~--~~~~v~~~~~Dl~d~~~l~~ 80 (520)
-||||||++-||+++++.|.++|.. .|...+ |+.+. ....+.+ ...++..+.+|++|++++.+
T Consensus 3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~--------r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~ 74 (240)
T d2bd0a1 3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSS--------RTAADLEKISLECRAEGALTDTITADISDMADVRR 74 (240)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEE--------SCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHH
T ss_pred EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEe--------CCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHH
Confidence 4799999999999999999999942 277744 33221 0011111 12457789999999998877
Q ss_pred HHc-------CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCC
Q 010005 81 VLE-------GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHD 142 (520)
Q Consensus 81 ~l~-------~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~ 142 (520)
+++ ++|++||.|+. .....+++..+++|+.|+..+.+++. +.+-.++|++||.+.+.
T Consensus 75 ~~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~----- 149 (240)
T d2bd0a1 75 LTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATK----- 149 (240)
T ss_dssp HHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-----
T ss_pred HHHHHHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcC-----
Confidence 764 58999999998 23456778899999999999887774 44556899999987652
Q ss_pred CCCCCCCccCCCCCCChHHHHHHHHHHHHHHhc---CCCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCC
Q 010005 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGE 219 (520)
Q Consensus 143 ~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~---~~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~ 219 (520)
+......|+.||+..+.+.+.++ ..+|+++.++.||.+-.+..... +.+
T Consensus 150 ----------~~~~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~~~~~------------------~~~ 201 (240)
T d2bd0a1 150 ----------AFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKV------------------DDE 201 (240)
T ss_dssp ----------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCC------------------CST
T ss_pred ----------CCCCChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCchhhhc------------------CHh
Confidence 12235689999999888877653 34799999999999876532110 111
Q ss_pred cccccccHHHHHHHHHHHHH
Q 010005 220 NMSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~ 239 (520)
....+...+|+|++++.++.
T Consensus 202 ~~~~~~~PedvA~~v~~l~s 221 (240)
T d2bd0a1 202 MQALMMMPEDIAAPVVQAYL 221 (240)
T ss_dssp TGGGSBCHHHHHHHHHHHHT
T ss_pred hHhcCCCHHHHHHHHHHHHc
Confidence 22345668999999998886
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.55 E-value=2.9e-15 Score=142.74 Aligned_cols=211 Identities=17% Similarity=0.155 Sum_probs=144.7
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc------
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE------ 83 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~------ 83 (520)
++|||||++-||..+++.|.++| ++|.+.|+ +... +. .+......+..+|+.|.++++++++
T Consensus 2 TAlVTGas~GiG~aiA~~la~~G-a~V~i~~r--------~~~~--~~-~~~~~~~~~~~~dv~~~~~~~~~~~~~~~~~ 69 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAG-HTVACHDE--------SFKQ--KD-ELEAFAETYPQLKPMSEQEPAELIEAVTSAY 69 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTT-CEEEECCG--------GGGS--HH-HHHHHHHHCTTSEECCCCSHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCC-CEEEEEEC--------CHHH--HH-HHHhhhCcEEEeccCCHHHHHHHHHHHHHHc
Confidence 68999999999999999999999 59999544 3221 00 0011112334578887766555543
Q ss_pred -CCCEEEEcccCC--------CCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCCCCCc
Q 010005 84 -GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDETL 150 (520)
Q Consensus 84 -~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~~E~~ 150 (520)
+.|++||.||.. ....+++..+++|+.++.++.+++. +.+-.++|++||...+.
T Consensus 70 G~iDiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~------------- 136 (252)
T d1zmta1 70 GQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFG------------- 136 (252)
T ss_dssp SCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTS-------------
T ss_pred CCCCEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeeccccccccc-------------
Confidence 689999998861 1224567788999999988887763 44556999999987652
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCc--------hHHHHHHhcCCCceEEecCCC
Q 010005 151 TCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL--------VPLLVNLAKPGWTKFIIGSGE 219 (520)
Q Consensus 151 ~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~--------~~~l~~~~~~g~~~~i~g~g~ 219 (520)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+-.+..... .+...+...+..|
T Consensus 137 --~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~~~~~p-------- 206 (252)
T d1zmta1 137 --PWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTA-------- 206 (252)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSS--------
T ss_pred --ccccccccccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHHHhcCC--------
Confidence 112346899999999988777653 3689999999999987654322 1222333322222
Q ss_pred cccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+.-+...+|+|.+++.++- +......|+.+.+.++-
T Consensus 207 -l~R~g~pedvA~~v~fL~S---~~s~~iTG~~i~vdGG~ 242 (252)
T d1zmta1 207 -LQRLGTQKELGELVAFLAS---GSCDYLTGQVFWLAGGF 242 (252)
T ss_dssp -SSSCBCHHHHHHHHHHHHT---TSCGGGTTCEEEESTTC
T ss_pred -CCCCcCHHHHHHHHHHHhC---chhcCCcCCeEEECCCc
Confidence 1125569999999998875 11345789999998875
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=4.1e-15 Score=140.74 Aligned_cols=194 Identities=12% Similarity=0.035 Sum_probs=138.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
-.+|.|+||||++-||++++++|.++| ++|.+.|+.... +..- ..++.. ...++..+.+|++|++++.++++
T Consensus 5 l~Gkv~lITGas~GIG~~ia~~la~~G-~~V~l~~r~~~~-l~~~--~~~~~~--~~~~~~~~~~Dvs~~~~v~~~~~~i 78 (244)
T d1yb1a_ 5 VTGEIVLITGAGHGIGRLTAYEFAKLK-SKLVLWDINKHG-LEET--AAKCKG--LGAKVHTFVVDCSNREDIYSSAKKV 78 (244)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHHH--TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHH-HHHH--HHHHHh--cCCcEEEEEeeCCCHHHHHHHHHHH
Confidence 357899999999999999999999999 699996553210 0000 001111 23468899999999998887664
Q ss_pred -----CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCCC
Q 010005 84 -----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 84 -----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
++|++||+||.. .....++.++++|+.|+.++.+++ ++.+-.++|++||...+.
T Consensus 79 ~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~---------- 148 (244)
T d1yb1a_ 79 KAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHV---------- 148 (244)
T ss_dssp HHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CC----------
T ss_pred HHHcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcC----------
Confidence 589999999982 122346789999999999887765 455667999999998751
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC------CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI------DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~------~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (520)
+......|+.||+..+.+.+.++.+ .|+.++++.||.|-.+..+... ...
T Consensus 149 -----~~~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~~~~~-------------------~~~ 204 (244)
T d1yb1a_ 149 -----SVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNPS-------------------TSL 204 (244)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCTH-------------------HHH
T ss_pred -----CCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhhhCcC-------------------ccc
Confidence 1122467999999999888877542 5899999999987554321110 111
Q ss_pred cccccHHHHHHHHHHHHH
Q 010005 222 SDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 222 ~~~i~v~Dva~ai~~~~~ 239 (520)
...+..+|+|+.+...++
T Consensus 205 ~~~~~pe~va~~i~~~~~ 222 (244)
T d1yb1a_ 205 GPTLEPEEVVNRLMHGIL 222 (244)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHh
Confidence 234568999999988776
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=3.1e-14 Score=135.14 Aligned_cols=212 Identities=15% Similarity=0.095 Sum_probs=141.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHH--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVL-- 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l-- 82 (520)
-++|.+|||||++-||.+++++|.++| ++|++.|+. .++. ...+.+ ........+|+.+.+.+++..
T Consensus 3 lkGKvalITGas~GIG~aia~~la~~G-~~V~~~~r~--------~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~ 72 (248)
T d2o23a1 3 VKGLVAVITGGASGLGLATAERLVGQG-ASAVLLDLP--------NSGGEAQAKKL-GNNCVFAPADVTSEKDVQTALAL 72 (248)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECT--------TSSHHHHHHHH-CTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCC--------hHHHHHHHHHh-CCCcccccccccccccccccccc
Confidence 368999999999999999999999999 599995543 2210 000111 246778899999876655443
Q ss_pred -----cCCCEEEEcccCC-------------CCCcchhhHHhhhHHHHHHHHHHHHHC----------CCCEEEEeeccc
Q 010005 83 -----EGASTVFYVDATD-------------LNTDDFYNCYMIIVQGAKNVVTACREC----------KVRRLVYNSTAD 134 (520)
Q Consensus 83 -----~~~D~Vih~aa~~-------------~~~~~~~~~~~~Nv~gt~~ll~aa~~~----------gvkr~V~~SS~~ 134 (520)
...|.+++.++.. .....++..+++|+.++.++.+++... +-.++|++||..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~ 152 (248)
T d2o23a1 73 AKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVA 152 (248)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTH
T ss_pred cccccccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchh
Confidence 2478888877551 112356788999999999999988542 233799999998
Q ss_pred ccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCc
Q 010005 135 VVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT 211 (520)
Q Consensus 135 vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~ 211 (520)
.+. +......|+.+|+..+.+.+.++.+ +|+++.++.||.+..+..........+......|
T Consensus 153 ~~~---------------~~~~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~p 217 (248)
T d2o23a1 153 AFE---------------GQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPEKVCNFLASQVP 217 (248)
T ss_dssp HHH---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC----------CHHHHTCS
T ss_pred hcc---------------CCCCchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhhcCCHHHHHHHHhcCC
Confidence 752 2234568999999999998877543 6899999999998766433222222222211111
Q ss_pred eEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEE
Q 010005 212 KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFI 255 (520)
Q Consensus 212 ~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni 255 (520)
. . .-+...+|+|.++..+++ ..-..|++.+|
T Consensus 218 --l--~----~R~g~peevA~~v~fL~s-----~~~itGq~I~v 248 (248)
T d2o23a1 218 --F--P----SRLGDPAEYAHLVQAIIE-----NPFLNGEVIRL 248 (248)
T ss_dssp --S--S----CSCBCHHHHHHHHHHHHH-----CTTCCSCEEEE
T ss_pred --C--C----CCCcCHHHHHHHHHHHHh-----CCCCCceEeEC
Confidence 0 0 124568999999998876 35567776654
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.52 E-value=6.1e-14 Score=136.52 Aligned_cols=223 Identities=14% Similarity=0.116 Sum_probs=146.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
.-++|++|||||+|-||++++++|.++| ++|++.|+.... +. .....+... .......+.+|++|.+++.++++
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~G-a~Vii~~r~~~~-l~--~~~~~l~~~-~g~~~~~~~~D~~~~~~v~~~~~~ 96 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLG-AQCVIASRKMDV-LK--ATAEQISSQ-TGNKVHAIQCDVRDPDMVQNTVSE 96 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HH--HHHHHHHHH-HSSCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHH-HH--HHHHHHHHh-cCCceEEEEecccChHHHHHHhhh
Confidence 3456999999999999999999999999 699996553210 00 000001000 12457789999999988776653
Q ss_pred ------CCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHH----H-CCCCEEEEeecccccccCCCCCCC
Q 010005 84 ------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----E-CKVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 84 ------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~----~-~gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
++|++||+|+.. ....++...+.+|..+...+...+. . .+-..++.+||.....
T Consensus 97 ~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~-------- 168 (294)
T d1w6ua_ 97 LIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET-------- 168 (294)
T ss_dssp HHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH--------
T ss_pred hhhhccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhh--------
Confidence 589999999982 2223456678888888777765543 2 2344667777665431
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCc---hHHHHHHhcCCCceEEecCCC
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL---VPLLVNLAKPGWTKFIIGSGE 219 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~---~~~l~~~~~~g~~~~i~g~g~ 219 (520)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+-.+..... .....+......|
T Consensus 169 -------~~~~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~p-------- 233 (294)
T d1w6ua_ 169 -------GSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIP-------- 233 (294)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCT--------
T ss_pred -------cccccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhccCCcHHHHHHHhhcCC--------
Confidence 112345799999999999887653 3789999999999976643211 1122222222222
Q ss_pred cccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
..-+...+|+|.++..++. +......|++..+.+|.
T Consensus 234 -l~R~~~pediA~~v~fL~s---d~s~~itG~~i~vDGG~ 269 (294)
T d1w6ua_ 234 -CGRLGTVEELANLAAFLCS---DYASWINGAVIKFDGGE 269 (294)
T ss_dssp -TSSCBCHHHHHHHHHHHTS---GGGTTCCSCEEEESTTH
T ss_pred -CCCCCCHHHHHHHHHHHhC---chhcCCCCcEEEECCCh
Confidence 2235568999999998874 11245789999998875
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.51 E-value=7.1e-14 Score=134.50 Aligned_cols=223 Identities=13% Similarity=0.091 Sum_probs=150.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~-- 83 (520)
.++|++|||||++-||.++++.|+++| ++|++.|+.....+... ...+.+ ...++..+.+|++|++++.+.++
T Consensus 16 L~gK~~lITGas~GIG~aia~~la~~G-a~Vvi~~~~~~~~~~~~--~~~~~~--~g~~~~~~~~D~~~~~~v~~~~~~~ 90 (272)
T d1g0oa_ 16 LEGKVALVTGAGRGIGREMAMELGRRG-CKVIVNYANSTESAEEV--VAAIKK--NGSDAACVKANVGVVEDIVRMFEEA 90 (272)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHH--HHHHHH--TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCchHHHHHH--HHHHHh--hCCceeeEeCCCCCHHHHHHHHHHH
Confidence 457999999999999999999999999 59988654321000000 000000 13467889999999988877764
Q ss_pred -----CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCCCCCCCCC
Q 010005 84 -----GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDET 149 (520)
Q Consensus 84 -----~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~~~~~~E~ 149 (520)
+.|++||.++. .....++...+++|+.++..+.+++... .-.+.++++|..... .
T Consensus 91 ~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~--~--------- 159 (272)
T d1g0oa_ 91 VKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQA--K--------- 159 (272)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTC--S---------
T ss_pred HHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccccccc--c---------
Confidence 58999999988 2334567788999999999999998764 234777777654321 0
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCC-----------CCc-hHHHHH-HhcCCCceE
Q 010005 150 LTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGD-----------TQL-VPLLVN-LAKPGWTKF 213 (520)
Q Consensus 150 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~-----------~~~-~~~l~~-~~~~g~~~~ 213 (520)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+-.+.. ... -....+ .....
T Consensus 160 ---~~~~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 232 (272)
T d1g0oa_ 160 ---AVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQW---- 232 (272)
T ss_dssp ---SCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHS----
T ss_pred ---cccchhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCChHHHHHHHhhhhcccccchHHHHHHHHHcc----
Confidence 223456799999999988876654 3799999999999864310 000 011100 11111
Q ss_pred EecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 214 i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
.+..-+...+|+|.++..++.. ......|++..+.++.
T Consensus 233 -----~PlgR~~~peevA~~v~fL~s~---~s~~itG~~i~vDGG~ 270 (272)
T d1g0oa_ 233 -----SPLRRVGLPIDIARVVCFLASN---DGGWVTGKVIGIDGGA 270 (272)
T ss_dssp -----CTTCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTC
T ss_pred -----CCCCCCcCHHHHHHHHHHHhCc---hhcCccCceEeECCCC
Confidence 1122466789999999988851 1245689999998875
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.49 E-value=1.4e-13 Score=130.48 Aligned_cols=165 Identities=13% Similarity=0.073 Sum_probs=116.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHh---cCCcEEEEecCCcccccCCCCCCC-CCCCC-CCCCCcEEEEecCCCHHHHHHHH
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLE---LGKCIVRVTDSTQSLQLDPSESNS-LLPDS-LSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~---~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~-~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
||+||||||++-||.++++.|++ +| ++|++. .|++++. .+.+. ....++.++.+|++|++++++++
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g-~~V~~~--------~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~ 72 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPP-QHLFTT--------CRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLV 72 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCC-SEEEEE--------ESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCC-CEEEEE--------ECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHH
Confidence 57899999999999999999985 57 589984 4443311 11110 12357899999999988776554
Q ss_pred c---------CCCEEEEcccCC--------CCCcchhhHHhhhHHHHHHHHHHHHH---------------CCCCEEEEe
Q 010005 83 E---------GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTACRE---------------CKVRRLVYN 130 (520)
Q Consensus 83 ~---------~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~ll~aa~~---------------~gvkr~V~~ 130 (520)
+ +.|++||.||.. ....+++.++++|+.|+..+.+++.. .+-.++|.+
T Consensus 73 ~~i~~~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i 152 (248)
T d1snya_ 73 ADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINM 152 (248)
T ss_dssp HHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEE
T ss_pred hhhHHHhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccc
Confidence 3 489999999971 12223567899999999988887632 134589999
Q ss_pred ecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhc---CCCCceEEEEecCccccC
Q 010005 131 STADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGP 193 (520)
Q Consensus 131 SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~---~~~gi~~~ilRp~~vyGp 193 (520)
||....- . .. +......|+.||+....+.+.++ ..+|+++.++.||.+-.+
T Consensus 153 ~S~~g~~--~-------~~---~~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T~ 206 (248)
T d1snya_ 153 SSILGSI--Q-------GN---TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTD 206 (248)
T ss_dssp CCGGGCS--T-------TC---CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCST
T ss_pred ccccccc--C-------CC---CCCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccCC
Confidence 9875321 0 00 22234589999999888876654 236899999999988654
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.49 E-value=8.3e-14 Score=131.13 Aligned_cols=198 Identities=13% Similarity=0.041 Sum_probs=136.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHH------
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK------ 80 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~------ 80 (520)
++|+||||||+|-||+++++.|.++| ++|.++|+... .. ......+..|..+.++.+.
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G-~~V~~~~~~~~------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARN-WWVASIDVVEN------EE---------ASASVIVKMTDSFTEQADQVTAEVG 64 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEESSCC------TT---------SSEEEECCCCSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCcc------cc---------ccccceeecccCcHHHHHHHHHHHH
Confidence 46899999999999999999999999 69999765321 11 0122334455555443332
Q ss_pred -HHc--CCCEEEEcccC----CC----CCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCCCCCCC
Q 010005 81 -VLE--GASTVFYVDAT----DL----NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGD 147 (520)
Q Consensus 81 -~l~--~~D~Vih~aa~----~~----~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~~~~~~ 147 (520)
.+. ++|++||+||. .. ...+++..+++|+.++.++.+++..+ +-.++|++||.....
T Consensus 65 ~~~~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~---------- 134 (236)
T d1dhra_ 65 KLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD---------- 134 (236)
T ss_dssp HHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS----------
T ss_pred HHhCCCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcC----------
Confidence 222 37999999985 11 12345678999999999999888764 235899999987641
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC-----CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCccc
Q 010005 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI-----DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (520)
Q Consensus 148 E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (520)
+......|+.||+..+.+.+.++.+ +|+++.++.|+.+..|. .+..... ...-
T Consensus 135 -----~~~~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~~--------~~~~~~~---------~~~~ 192 (236)
T d1dhra_ 135 -----GTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPM--------NRKSMPE---------ADFS 192 (236)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHH--------HHHHSTT---------SCGG
T ss_pred -----CccCCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCCc--------chhhCcc---------chhh
Confidence 1223468999999999999998754 57999999999987541 1222111 1223
Q ss_pred ccccHHHHHHHHHHHHHhhhcccccCCCceEEE
Q 010005 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFI 255 (520)
Q Consensus 223 ~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni 255 (520)
.|+..+|+|+.+..++.. ......|+...+
T Consensus 193 ~~~~pe~va~~~~~l~s~---~~~~i~G~~i~v 222 (236)
T d1dhra_ 193 SWTPLEFLVETFHDWITG---NKRPNSGSLIQV 222 (236)
T ss_dssp GSEEHHHHHHHHHHHHTT---TTCCCTTCEEEE
T ss_pred cCCCHHHHHHHHHHHhCC---CccCCCCCeEEE
Confidence 567789999999988761 123456766665
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.48 E-value=4.5e-13 Score=126.07 Aligned_cols=207 Identities=16% Similarity=0.064 Sum_probs=143.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc----
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~---- 83 (520)
+|++|||||++-||++++++|.++| ++|++.|+. .+ ..+....++|+.+.....++..
T Consensus 1 DK~alITGas~GIG~aiA~~la~~G-a~V~i~~~~--------~~---------~~~~~~~~~d~~~~~~~~~~~~~~~~ 62 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARG-YRVVVLDLR--------RE---------GEDLIYVEGDVTREEDVRRAVARAQE 62 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEESS--------CC---------SSSSEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECC--------cc---------cccceEeeccccchhhhHHHHHhhhc
Confidence 4799999999999999999999999 599995543 22 1245678999999876655543
Q ss_pred --CCCEEEEcccCC-----------CCCcchhhHHhhhHHHHHHHHHHHHHC----------CCCEEEEeecccccccCC
Q 010005 84 --GASTVFYVDATD-----------LNTDDFYNCYMIIVQGAKNVVTACREC----------KVRRLVYNSTADVVFDGS 140 (520)
Q Consensus 84 --~~D~Vih~aa~~-----------~~~~~~~~~~~~Nv~gt~~ll~aa~~~----------gvkr~V~~SS~~vyg~~~ 140 (520)
+.+.+++.++.. .....++..+++|..+..++...+... +-.++|++||...+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~--- 139 (241)
T d1uaya_ 63 EAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFE--- 139 (241)
T ss_dssp HSCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHH---
T ss_pred cccccchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhcc---
Confidence 335555555440 112245668899999998888776432 234899999987652
Q ss_pred CCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecC
Q 010005 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGS 217 (520)
Q Consensus 141 ~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~ 217 (520)
+......|+.+|+..+.+.+.++. .+|+++.++-||.+-.+.................+. .
T Consensus 140 ------------~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~--~-- 203 (241)
T d1uaya_ 140 ------------GQIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLPEKAKASLAAQVPF--P-- 203 (241)
T ss_dssp ------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTSCHHHHHHHHTTCCS--S--
T ss_pred ------------CCCCchhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccchhhhhHHHHHHhcCCC--C--
Confidence 223356899999999998887754 378999999999987653322223333333222221 0
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
.-+...+|+|.++..++. .....|+++.+.++-.
T Consensus 204 ----~R~g~pedvA~~v~fL~s-----~~~iTG~~i~VDGG~~ 237 (241)
T d1uaya_ 204 ----PRLGRPEEYAALVLHILE-----NPMLNGEVVRLDGALR 237 (241)
T ss_dssp ----CSCCCHHHHHHHHHHHHH-----CTTCCSCEEEESTTCC
T ss_pred ----CCCcCHHHHHHHHHHHHh-----CCCCCCCEEEECCccc
Confidence 124458999999998887 3568899999988753
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.47 E-value=5.7e-14 Score=134.20 Aligned_cols=214 Identities=14% Similarity=0.064 Sum_probs=143.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHh---cCCcEEEEecCCcccccCCCCCC-----CCCCCCCCCCCcEEEEecCCCHH
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLE---LGKCIVRVTDSTQSLQLDPSESN-----SLLPDSLSSGRAEYHQVDVRDIS 76 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~---~g~~~V~~~D~~~~~~l~r~~~~-----~~l~~~~~~~~v~~~~~Dl~d~~ 76 (520)
..++|.++||||++-||.++++.|.+ +| ++|++.+ |++++ ..+.......++..+.+|++|++
T Consensus 3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G-~~Vv~~~--------r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~ 73 (259)
T d1oaaa_ 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPG-SVMLVSA--------RSESMLRQLKEELGAQQPDLKVVLAAADLGTEA 73 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTT-CEEEEEE--------SCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHhcccCC-CEEEEEE--------CCHHHHHHHHHHHHhhcCCceEEEEEccCCCHH
Confidence 45678899999999999999999986 68 5999954 43321 01111112346788999999999
Q ss_pred HHHHHHc-----------CCCEEEEcccCC----------CCCcchhhHHhhhHHHHHHHHHHHHHC----C--CCEEEE
Q 010005 77 QIKKVLE-----------GASTVFYVDATD----------LNTDDFYNCYMIIVQGAKNVVTACREC----K--VRRLVY 129 (520)
Q Consensus 77 ~l~~~l~-----------~~D~Vih~aa~~----------~~~~~~~~~~~~Nv~gt~~ll~aa~~~----g--vkr~V~ 129 (520)
++.++++ +.|+++|.||.. ....+++.++++|+.++.++.+++... + -.++|+
T Consensus 74 ~v~~l~~~~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~ 153 (259)
T d1oaaa_ 74 GVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVN 153 (259)
T ss_dssp HHHHHHHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEE
T ss_pred HHHHHHHHHHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccc
Confidence 8887763 247899998861 111356778999999999999998654 2 247999
Q ss_pred eecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC-CCCceEEEEecCccccCCCCC-----chHHHH
Q 010005 130 NSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN-IDGLLTCALRPSNVFGPGDTQ-----LVPLLV 203 (520)
Q Consensus 130 ~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~-~~gi~~~ilRp~~vyGp~~~~-----~~~~l~ 203 (520)
+||...+. +......|+.||+..+.+.+.++. .+|+++.++.||.+-.+.... --+...
T Consensus 154 isS~~~~~---------------~~~~~~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~ 218 (259)
T d1oaaa_ 154 ISSLCALQ---------------PYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELR 218 (259)
T ss_dssp ECCGGGTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHHHH
T ss_pred cccccccC---------------CCccchHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCCCCHHHHHhhhcCCCHHHH
Confidence 99987641 223457899999999999887753 368999999999987552110 001111
Q ss_pred HHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEE
Q 010005 204 NLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFI 255 (520)
Q Consensus 204 ~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni 255 (520)
....... ....+...+|+|++++.++.. ..-..|+.+++
T Consensus 219 ~~~~~~~---------~~~r~~~p~evA~~i~~ll~~----~s~~TG~~idv 257 (259)
T d1oaaa_ 219 SKLQKLK---------SDGALVDCGTSAQKLLGLLQK----DTFQSGAHVDF 257 (259)
T ss_dssp HHHHHHH---------HTTCSBCHHHHHHHHHHHHHH----CCSCTTEEEET
T ss_pred HHHHhcC---------CCCCCCCHHHHHHHHHHHhhh----ccCCCCCeEEe
Confidence 1111000 011234589999999988862 23456666554
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=2.3e-13 Score=131.70 Aligned_cols=164 Identities=16% Similarity=0.137 Sum_probs=120.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCC---C--CCCCCCcEEEEecCCCHHHHHHHH
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLP---D--SLSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~-~~l~---~--~~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
|.||||||++-||+++++.|.++|. +|+.+++ ..|+... ..+. + .....++..+.+|++|.+++.+++
T Consensus 3 kVvlITGassGIG~a~A~~la~~Ga-~v~~v~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~ 76 (285)
T d1jtva_ 3 TVVLITGCSSGIGLHLAVRLASDPS-QSFKVYA-----TLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAAR 76 (285)
T ss_dssp EEEEESCCSSHHHHHHHHHHHTCTT-CCEEEEE-----EESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHCCC-CeEEEEE-----ecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhh
Confidence 4568999999999999999999994 6544332 1222110 0010 0 112357889999999999998887
Q ss_pred c-----CCCEEEEcccC-------CCCCcchhhHHhhhHHHHHHHHHHH----HHCCCCEEEEeecccccccCCCCCCCC
Q 010005 83 E-----GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNG 146 (520)
Q Consensus 83 ~-----~~D~Vih~aa~-------~~~~~~~~~~~~~Nv~gt~~ll~aa----~~~gvkr~V~~SS~~vyg~~~~~~~~~ 146 (520)
+ ..|+++|.|+. .....++...+++|+.|+.++.+++ ++.+-.++|++||.....
T Consensus 77 ~~~~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~--------- 147 (285)
T d1jtva_ 77 ERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLM--------- 147 (285)
T ss_dssp HTCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTS---------
T ss_pred hhccccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcC---------
Confidence 5 37999999988 1334567889999999999988876 445666999999987641
Q ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccC
Q 010005 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGP 193 (520)
Q Consensus 147 ~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp 193 (520)
+......|+.||+..+.+.+.++.+ +|+++.++.||.+-.+
T Consensus 148 ------~~~~~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~ 191 (285)
T d1jtva_ 148 ------GLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTA 191 (285)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-
T ss_pred ------CCCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCCh
Confidence 2233567999999999887766533 6999999999998654
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.43 E-value=3.4e-13 Score=126.79 Aligned_cols=200 Identities=14% Similarity=0.041 Sum_probs=134.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHH-------H
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIK-------K 80 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~-------~ 80 (520)
..|||||||+|-||++++++|.++| ++|+++|+.. ... ........+|..+.++.. +
T Consensus 2 ~gkVlITGas~GIG~aia~~l~~~G-~~V~~~~~~~--------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (235)
T d1ooea_ 2 SGKVIVYGGKGALGSAILEFFKKNG-YTVLNIDLSA--------NDQ-------ADSNILVDGNKNWTEQEQSILEQTAS 65 (235)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTT-EEEEEEESSC--------CTT-------SSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCc--------hhc-------ccccceeccccCchhHHHHHHHHHHH
Confidence 3689999999999999999999999 6999966543 110 011234456665544322 2
Q ss_pred HHc--CCCEEEEcccC----CCC----CcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCCCCCCCC
Q 010005 81 VLE--GASTVFYVDAT----DLN----TDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDE 148 (520)
Q Consensus 81 ~l~--~~D~Vih~aa~----~~~----~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~~~~~~E 148 (520)
.++ +.|++||+||. ... ...++..+++|+.++.++.+++..+ +-.++|++||...+.
T Consensus 66 ~~~~g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~----------- 134 (235)
T d1ooea_ 66 SLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG----------- 134 (235)
T ss_dssp HHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS-----------
T ss_pred HhcCCCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcC-----------
Confidence 222 37999999986 111 1245667999999999998888764 124899999987652
Q ss_pred CccCCCCCCChHHHHHHHHHHHHHHhcCC-----CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCcccc
Q 010005 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI-----DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (520)
Q Consensus 149 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (520)
+......|+.+|+..+.+.+.++.+ .++++..+.|+.+-.+ +.+....+ .....
T Consensus 135 ----~~~~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~--------~~~~~~~~---------~~~~~ 193 (235)
T d1ooea_ 135 ----PTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTP--------MNRKWMPN---------ADHSS 193 (235)
T ss_dssp ----CCTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCH--------HHHHHSTT---------CCGGG
T ss_pred ----CcccccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCc--------chhhhCcC---------Ccccc
Confidence 2223468999999999999987654 4778899999887532 12222211 22345
Q ss_pred cccHHHHHHHHHHHHHhhhcccccCCCceEEEeC
Q 010005 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (520)
Q Consensus 224 ~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~ 257 (520)
|+..+|+++.++..+.... .....|..+.+..
T Consensus 194 ~~~~~~va~~~~~~l~~~~--~~~~tG~~i~v~~ 225 (235)
T d1ooea_ 194 WTPLSFISEHLLKWTTETS--SRPSSGALLKITT 225 (235)
T ss_dssp CBCHHHHHHHHHHHHHCGG--GCCCTTCEEEEEE
T ss_pred CCCHHHHHHHHHHHhcCcc--ccCCCceEEEEEe
Confidence 7789999999876665211 1235677777743
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=8e-13 Score=125.88 Aligned_cols=218 Identities=12% Similarity=0.063 Sum_probs=146.4
Q ss_pred CCCeEEEEcCCC--hhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCC-CCCCCCcEEEEecCCCHHHHHHHH
Q 010005 7 IPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPD-SLSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 7 ~~~~ILVtGatG--fIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~-~~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
++|++|||||+| -||+++++.|+++| ++|++.|+. +... ...+ .........+..|+.+..+..+.+
T Consensus 4 ~gK~~lITGass~~GIG~aiA~~l~~~G-~~V~i~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (258)
T d1qsga_ 4 SGKRILVTGVASKLSIAYGIAQAMHREG-AELAFTYQN--------DKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMF 74 (258)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTT-CEEEEEESS--------TTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCCchhHHHHHHHHHHHcC-CEEEEEeCC--------HHHHHHHHHHHhhcCCcceeecccchHHHHHHHH
Confidence 579999999999 69999999999999 589985543 2110 0000 011235677889999987766655
Q ss_pred c-------CCCEEEEcccCCC------------CCcchhhHHhhhHHHHHHHHHHHHHCC--CCEEEEeecccccccCCC
Q 010005 83 E-------GASTVFYVDATDL------------NTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSH 141 (520)
Q Consensus 83 ~-------~~D~Vih~aa~~~------------~~~~~~~~~~~Nv~gt~~ll~aa~~~g--vkr~V~~SS~~vyg~~~~ 141 (520)
+ ..|.+||.++... ..........+|+.+...+.+++...- -+.+|++||.....
T Consensus 75 ~~~~~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~---- 150 (258)
T d1qsga_ 75 AELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER---- 150 (258)
T ss_dssp HHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS----
T ss_pred HHhhhcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhcc----
Confidence 3 3699999997721 112234567788888888888876642 24688888876431
Q ss_pred CCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCc--hHHHHHHhcCCCceEEec
Q 010005 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIG 216 (520)
Q Consensus 142 ~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~--~~~l~~~~~~g~~~~i~g 216 (520)
+......|+.+|+..+.+.+.++. .+|+++.+++||.|..+..... ............|
T Consensus 151 -----------~~~~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~p----- 214 (258)
T d1qsga_ 151 -----------AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTP----- 214 (258)
T ss_dssp -----------BCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHST-----
T ss_pred -----------CCCCcHHHHHHHHHHHHHHHHHHHHhCccCceeecccccccccccccccchhhhHHHHHHhCCC-----
Confidence 222356899999999988776643 3789999999999987654321 1222222222111
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
..-+...+|+|.++..++. .......|+++.+.++.+
T Consensus 215 ----l~R~~~peeia~~v~fL~s---~~s~~itG~~i~vDGG~~ 251 (258)
T d1qsga_ 215 ----IRRTVTIEDVGNSAAFLCS---DLSAGISGEVVHVDGGFS 251 (258)
T ss_dssp ----TSSCCCHHHHHHHHHHHTS---GGGTTCCSCEEEESTTGG
T ss_pred ----CCCCcCHHHHHHHHHHHhC---chhcCccCceEEECcCHH
Confidence 1235568999999988774 113468899999988754
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=99.31 E-value=2e-11 Score=117.55 Aligned_cols=225 Identities=9% Similarity=-0.011 Sum_probs=140.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCC--------CCCC------CCCCCCCCCCCcEEEEecCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDP--------SESN------SLLPDSLSSGRAEYHQVDVR 73 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r--------~~~~------~~l~~~~~~~~v~~~~~Dl~ 73 (520)
++-+|||||++-||++++++|.++| ++|++.++........ .... +...............+|++
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~G-a~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~ 80 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAEG-YAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVT 80 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCC
Confidence 3578999999999999999999999 5888755432100000 0000 00000001123455678899
Q ss_pred CHHHHHHHHc-------CCCEEEEcccCCCC-------Ccc--------------hhhHHhhhHHHHHHHHHHHHHC---
Q 010005 74 DISQIKKVLE-------GASTVFYVDATDLN-------TDD--------------FYNCYMIIVQGAKNVVTACREC--- 122 (520)
Q Consensus 74 d~~~l~~~l~-------~~D~Vih~aa~~~~-------~~~--------------~~~~~~~Nv~gt~~ll~aa~~~--- 122 (520)
+.++++++++ +.|++||+||.... ..+ ....+.+|+.++..+.+++.+.
T Consensus 81 ~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~ 160 (284)
T d1e7wa_ 81 LFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAG 160 (284)
T ss_dssp HHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhh
Confidence 9888877764 58999999997211 011 1236788999998888876432
Q ss_pred -------CCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCcccc
Q 010005 123 -------KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFG 192 (520)
Q Consensus 123 -------gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyG 192 (520)
+..++|.++|..... +......|+.+|+..+.+.+.++. .+|+++.++-||.+-.
T Consensus 161 ~~~~~~~~~~~ii~~~s~~~~~---------------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~t~~ 225 (284)
T d1e7wa_ 161 TPAKHRGTNYSIINMVDAMTNQ---------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVL 225 (284)
T ss_dssp SCGGGSCSCEEEEEECCTTTTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCC
T ss_pred hHHHhcCCCCcccccccccccC---------------CccceeeeccccccchhhhHHHHHHhCCccccccccccccccc
Confidence 233677777765431 223456899999999999887753 3689999999986322
Q ss_pred CCCCCchHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 193 PGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 193 p~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
. ....+...+......+. ..-+...+|+|++++.++. .......|+.+.+.+|..+
T Consensus 226 ~--~~~~~~~~~~~~~~~pl--------~~R~~~peeiA~~v~fL~S---~~s~~itG~~i~VDGG~sl 281 (284)
T d1e7wa_ 226 V--DDMPPAVWEGHRSKVPL--------YQRDSSAAEVSDVVIFLCS---SKAKYITGTCVKVDGGYSL 281 (284)
T ss_dssp G--GGSCHHHHHHHHTTCTT--------TTSCBCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTGGG
T ss_pred c--ccCCHHHHHHHHhcCCC--------CCCCCCHHHHHHHHHHHhC---chhcCccCCeEEECcChhc
Confidence 1 12233444444443321 1124569999999998875 1124578999999887654
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=4.6e-12 Score=121.37 Aligned_cols=192 Identities=12% Similarity=0.054 Sum_probs=132.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCC-C--CCCCCCcEEEEecCCCHHHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLP-D--SLSSGRAEYHQVDVRDISQIKKVL 82 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~-~--~~~~~~v~~~~~Dl~d~~~l~~~l 82 (520)
++|++|||||++-||.++++.|.++| ++|++.++ +.++- ... + .........+.+|+.+.+......
T Consensus 13 ~GK~alITGassGIG~aiA~~la~~G-~~Vil~~r--------~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 83 (269)
T d1xu9a_ 13 QGKKVIVTGASKGIGREMAYHLAKMG-AHVVVTAR--------SKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFV 83 (269)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEES--------CHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEEC--------CHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHH
Confidence 57899999999999999999999999 69999544 33210 000 0 012245677899999877655444
Q ss_pred -------cCCCEEEEcccCC-------CCCcchhhHHhhhHHHHHHHHHHHHHC---CCCEEEEeecccccccCCCCCCC
Q 010005 83 -------EGASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHN 145 (520)
Q Consensus 83 -------~~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~---gvkr~V~~SS~~vyg~~~~~~~~ 145 (520)
.+.|++++.|+.. .+..++...+++|+.++..+.+++... +-.++|++||.+.+.
T Consensus 84 ~~~~~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~~~-------- 155 (269)
T d1xu9a_ 84 AQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKV-------- 155 (269)
T ss_dssp HHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTS--------
T ss_pred HHHHHHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchhcC--------
Confidence 3589999999871 223455678999999999888877431 225899999987641
Q ss_pred CCCCccCCCCCCChHHHHHHHHHHHHHHhcCC-----CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCCCc
Q 010005 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI-----DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (520)
Q Consensus 146 ~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g~~ 220 (520)
+......|+.||+..+.+.+.++.+ .++++.++.||.|-.+ +......+. .
T Consensus 156 -------~~p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~--------~~~~~~~~~---------~ 211 (269)
T d1xu9a_ 156 -------AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTE--------TAMKAVSGI---------V 211 (269)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCH--------HHHHHSCGG---------G
T ss_pred -------CCCCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCc--------HHHHhccCC---------c
Confidence 2233569999999999888777543 5789999999987532 222222221 1
Q ss_pred ccccccHHHHHHHHHHHHH
Q 010005 221 MSDFTYVENVAHAHVCAAE 239 (520)
Q Consensus 221 ~~~~i~v~Dva~ai~~~~~ 239 (520)
..+....+++|+.++....
T Consensus 212 ~~~~~~~e~~a~~i~~~~~ 230 (269)
T d1xu9a_ 212 HMQAAPKEECALEIIKGGA 230 (269)
T ss_dssp GGGCBCHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHhh
Confidence 2234557899988887665
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.28 E-value=8.1e-12 Score=119.83 Aligned_cols=220 Identities=10% Similarity=0.055 Sum_probs=134.1
Q ss_pred CCCeEEEEcCCC--hhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 7 IPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 7 ~~~~ILVtGatG--fIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
++|++|||||+| -||.+++++|.++| ++|++.|+... ... ....+.+ .........+|+.+.+++.++++
T Consensus 4 ~gK~alITGaag~~GIG~AiA~~la~~G-a~V~i~~r~~~--~~~--~~~~l~~--~~~~~~~~~~d~~~~~~~~~~~~~ 76 (274)
T d2pd4a1 4 KGKKGLIVGVANNKSIAYGIAQSCFNQG-ATLAFTYLNES--LEK--RVRPIAQ--ELNSPYVYELDVSKEEHFKSLYNS 76 (274)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHTTT-CEEEEEESSTT--THH--HHHHHHH--HTTCCCEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHCC-CEEEEEeCCHH--HHH--HHHHHHh--hCCceeEeeecccchhhHHHHHHH
Confidence 579999999988 69999999999999 69999665321 000 0000011 12355678999999887776663
Q ss_pred ------CCCEEEEcccCCCC--------CcchhhHHhhh---HHHHHHHHHHHHHC-CCC-EEEEeecccccccCCCCCC
Q 010005 84 ------GASTVFYVDATDLN--------TDDFYNCYMII---VQGAKNVVTACREC-KVR-RLVYNSTADVVFDGSHDIH 144 (520)
Q Consensus 84 ------~~D~Vih~aa~~~~--------~~~~~~~~~~N---v~gt~~ll~aa~~~-gvk-r~V~~SS~~vyg~~~~~~~ 144 (520)
.+|++||.++.... ..........+ ..+.........+. +-. .++.+|+.+..+
T Consensus 77 ~~~~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~------- 149 (274)
T d2pd4a1 77 VKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK------- 149 (274)
T ss_dssp HHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS-------
T ss_pred HHHHcCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeeccccccc-------
Confidence 57999999987211 11112222222 22233333333322 222 355555544331
Q ss_pred CCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCch--HHHHHHhcCCCceEEecCCC
Q 010005 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGE 219 (520)
Q Consensus 145 ~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~--~~l~~~~~~g~~~~i~g~g~ 219 (520)
+......|+.+|...+.+.+..+. .+|+++.++.|+.+..+...... +..........+
T Consensus 150 --------~~~~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~p-------- 213 (274)
T d2pd4a1 150 --------YMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAP-------- 213 (274)
T ss_dssp --------BCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHST--------
T ss_pred --------ccccchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccccccCchHHHHHHHhhhhh--------
Confidence 223456899999999998776543 27899999999998876543221 222222211111
Q ss_pred cccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 220 ~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
..-+...+|+|.+++.++.. ......|+++.+.++..
T Consensus 214 -~~r~~~pedIA~~v~fL~S~---~s~~itG~~i~vDGG~~ 250 (274)
T d2pd4a1 214 -LRKNVSLEEVGNAGMYLLSS---LSSGVSGEVHFVDAGYH 250 (274)
T ss_dssp -TSSCCCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred -ccCCcCHHHHHHHHHHHhCh---hhCCCcCceEEECCChh
Confidence 22345699999999988751 13457899999988763
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.25 E-value=5.4e-12 Score=120.62 Aligned_cols=222 Identities=10% Similarity=-0.035 Sum_probs=137.2
Q ss_pred CCCCeEEEEcCCC--hhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 6 AIPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGatG--fIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
.++|++|||||+| -||.+++++|.++| .+|++.++.... ....+.+. ...+...+++|++++++..++++
T Consensus 4 l~gK~~lItGaag~~GIG~aiA~~la~~G-a~Vil~~~~~~~------~~~~~~~~-~~~~~~~~~~dv~~~~~~~~~~~ 75 (268)
T d2h7ma1 4 LDGKRILVSGIITDSSIAFHIARVAQEQG-AQLVLTGFDRLR------LIQRITDR-LPAKAPLLELDVQNEEHLASLAG 75 (268)
T ss_dssp TTTCEEEECCCSSTTCHHHHHHHHHHHTT-CEEEEEECSCHH------HHHHHHTT-SSSCCCEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHcC-CEEEEEeCChHH------HHHHHHHH-cCCceeeEeeecccccccccccc
Confidence 4579999999776 49999999999999 599885443210 00011111 23456789999999876554432
Q ss_pred ----------CCCEEEEcccCCC------------CCcchhhHHhhhHHHHHHHHHHHHHCC-CCEEEEeecccccccCC
Q 010005 84 ----------GASTVFYVDATDL------------NTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGS 140 (520)
Q Consensus 84 ----------~~D~Vih~aa~~~------------~~~~~~~~~~~Nv~gt~~ll~aa~~~g-vkr~V~~SS~~vyg~~~ 140 (520)
..|+++|+++... ........+..|.........++.... -...+.++|.....
T Consensus 76 ~v~~~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~--- 152 (268)
T d2h7ma1 76 RVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSR--- 152 (268)
T ss_dssp HHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSS---
T ss_pred hhhhccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcccccccccccccccc---
Confidence 3599999998621 112333456666666666666665543 22344444443321
Q ss_pred CCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCC--------C----CchHHHHHH
Q 010005 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGD--------T----QLVPLLVNL 205 (520)
Q Consensus 141 ~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~--------~----~~~~~l~~~ 205 (520)
.......|+.+|...+.+.+.++. .+|+++.++.|+.+-.+.. . .....+.+.
T Consensus 153 ------------~~p~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (268)
T d2h7ma1 153 ------------AMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEG 220 (268)
T ss_dssp ------------CCTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred ------------cCcccchhhccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhccchhhhhhccchHHHHHH
Confidence 112245899999999999887654 3689999999998864311 1 011112222
Q ss_pred hcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCCc
Q 010005 206 AKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (520)
Q Consensus 206 ~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~~ 261 (520)
.....| ..+.+...+|+|+++..++. +......|+++.+.++...
T Consensus 221 ~~~~~p--------l~rr~~~p~dva~~v~fL~S---d~a~~iTG~~i~vDGG~~~ 265 (268)
T d2h7ma1 221 WDQRAP--------IGWNMKDATPVAKTVCALLS---DWLPATTGDIIYADGGAHT 265 (268)
T ss_dssp HHHHCT--------TCCCTTCCHHHHHHHHHHHS---SSCTTCCSEEEEESTTGGG
T ss_pred HHhcCC--------CCCCCCCHHHHHHHHHHHhC---chhcCccCCEEEECcCccc
Confidence 211111 01235568999999998874 1134578999999887643
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=3.5e-12 Score=122.60 Aligned_cols=179 Identities=16% Similarity=0.047 Sum_probs=118.0
Q ss_pred CCeE-EEEcCCChhHHHHHHHHHhc-CCcEEEEecCCcccccCCCCC-CCCCCCCCCCCCcEEEEecCCCHHHHHHHHc-
Q 010005 8 PRTC-VVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSES-NSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (520)
Q Consensus 8 ~~~I-LVtGatGfIG~~lv~~L~~~-g~~~V~~~D~~~~~~l~r~~~-~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~- 83 (520)
+|+| |||||++-||.++++.|.++ | .+|++.++... +... ...+.. ...++.++.+|++|.++++++++
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g-~~Vi~~~r~~~----~~~~~~~~l~~--~~~~~~~~~~Dvs~~~sv~~~~~~ 74 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFS-GDVVLTARDVT----RGQAAVQQLQA--EGLSPRFHQLDIDDLQSIRALRDF 74 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSS-SEEEEEESSHH----HHHHHHHHHHH--TTCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCC-CEEEEEECCHH----HHHHHHHHHHh--cCCcEEEEEEecCCHHHHHHHHHH
Confidence 4666 89999999999999999987 7 58998544321 0000 001111 13468899999999988776654
Q ss_pred ------CCCEEEEcccCCC-------CCcchhhHHhhhHHHHHHHHHHHHHC--CCCEEEEeecccccccCCCC------
Q 010005 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHD------ 142 (520)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~--gvkr~V~~SS~~vyg~~~~~------ 142 (520)
+.|++||.||... ...+++..+++|+.|+.++.+++... .-.|+|.+||..........
T Consensus 75 ~~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~~~~~~~~~y~~~ 154 (275)
T d1wmaa1 75 LRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQ 154 (275)
T ss_dssp HHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHH
T ss_pred HHHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeccccccchhhhh
Confidence 5899999999821 12245668999999999999998653 12489999997653211000
Q ss_pred ---CCCCC-----------------CCccCCCCCCChHHHHHHHHHHHHHHhc-------CCCCceEEEEecCccccC
Q 010005 143 ---IHNGD-----------------ETLTCCWKFQDLMCDLKAQAEALVLFAN-------NIDGLLTCALRPSNVFGP 193 (520)
Q Consensus 143 ---~~~~~-----------------E~~~~~~~p~~~Y~~sK~~~E~~~~~~~-------~~~gi~~~ilRp~~vyGp 193 (520)
..... .....+..|...|+.||+....+.+.++ ...|+.+.++-||.|-.+
T Consensus 155 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~ 232 (275)
T d1wmaa1 155 KFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTD 232 (275)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCST
T ss_pred hhcccccchhhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCC
Confidence 00000 0000123456789999998877654432 225899999999988644
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.19 E-value=1.2e-10 Score=112.72 Aligned_cols=229 Identities=8% Similarity=-0.001 Sum_probs=140.0
Q ss_pred CCCCCCeEEEEcCCC--hhHHHHHHHHHhcCCcEEEEecCCcccc-----cCCCCC-CCCCCCCCCCCCc-EEEEec--C
Q 010005 4 DEAIPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQ-----LDPSES-NSLLPDSLSSGRA-EYHQVD--V 72 (520)
Q Consensus 4 ~~~~~~~ILVtGatG--fIG~~lv~~L~~~g~~~V~~~D~~~~~~-----l~r~~~-~~~l~~~~~~~~v-~~~~~D--l 72 (520)
...++|++|||||+| -||..++++|.++| .+|++.++..... ..+... ............. ....+| +
T Consensus 4 ~~L~gK~alVTGass~~GIG~aiA~~la~~G-a~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (297)
T d1d7oa_ 4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAG-AEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVF 82 (297)
T ss_dssp CCCTTCEEEEECCSSSSSHHHHHHHHHHHTT-CEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTC
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCC-CEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhc
Confidence 356789999999987 79999999999999 5888865432000 000000 0000000000011 112222 1
Q ss_pred ------------------CC---HH----HHHHHHcCCCEEEEcccCC---------CCCcchhhHHhhhHHHHHHHHHH
Q 010005 73 ------------------RD---IS----QIKKVLEGASTVFYVDATD---------LNTDDFYNCYMIIVQGAKNVVTA 118 (520)
Q Consensus 73 ------------------~d---~~----~l~~~l~~~D~Vih~aa~~---------~~~~~~~~~~~~Nv~gt~~ll~a 118 (520)
.| .+ ++.+.+.++|++||.||.. .+..++...+++|+.++.++.++
T Consensus 83 ~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~ 162 (297)
T d1d7oa_ 83 DNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSH 162 (297)
T ss_dssp CSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred cccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhhH
Confidence 11 12 2223334689999999862 12334677999999999999998
Q ss_pred HHHCCC--CEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHh----cCCCCceEEEEecCcccc
Q 010005 119 CRECKV--RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFA----NNIDGLLTCALRPSNVFG 192 (520)
Q Consensus 119 a~~~gv--kr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~----~~~~gi~~~ilRp~~vyG 192 (520)
+..... .+.+.+++.+.... .......|+.+|...+.+.+.. ..++|+++.++.||.+..
T Consensus 163 ~~~~~~~~g~~~~~~~~~~~~~--------------~~~~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~PG~i~T 228 (297)
T d1d7oa_ 163 FLPIMNPGGASISLTYIASERI--------------IPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGS 228 (297)
T ss_dssp HGGGEEEEEEEEEEECGGGTSC--------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBC
T ss_pred HHHHhhcCCcceeeeehhhccc--------------ccccccceecccccccccccccchhccccceEEecccccccccc
Confidence 876532 24555555543210 1233467999999888776654 334689999999999988
Q ss_pred CCCCC--chHHHHHHhcCCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCC
Q 010005 193 PGDTQ--LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (520)
Q Consensus 193 p~~~~--~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~ 259 (520)
+.... ..+.+.+......|+ .-+...+|+|.+++.++. .......|+++.+.++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~Pl---------gR~~~peevA~~v~fL~S---~~a~~itGq~i~vDGG~ 285 (297)
T d1d7oa_ 229 RAAKAIGFIDTMIEYSYNNAPI---------QKTLTADEVGNAAAFLVS---PLASAITGATIYVDNGL 285 (297)
T ss_dssp CCSSCCSHHHHHHHHHHHHSSS---------CCCBCHHHHHHHHHHHTS---GGGTTCCSCEEEESTTG
T ss_pred hhhhhccCCHHHHHHHHhCCCC---------CCCCCHHHHHHHHHHHhC---chhcCCcCceEEECcCH
Confidence 76543 233444444333221 224569999999998874 11345789999998864
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.13 E-value=1.1e-09 Score=103.45 Aligned_cols=218 Identities=12% Similarity=-0.039 Sum_probs=129.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHH-----
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL----- 82 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l----- 82 (520)
||.||||||+|-||++++++|.++| ++|++.|+. .. -...|+.+.+......
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~G-a~V~~~~~~--------~~--------------~~~~d~~~~~~~~~~~~~~~~ 57 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAG-HQIVGIDIR--------DA--------------EVIADLSTAEGRKQAIADVLA 57 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESS--------SS--------------SEECCTTSHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECC--------hH--------------HHHHHhcCHHHHHHHHHHHHH
Confidence 4788999999999999999999999 599985542 21 1245777765444332
Q ss_pred ---cCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHH----HCCCCEEEEeecccccccCCCCCCCCCC-------
Q 010005 83 ---EGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE------- 148 (520)
Q Consensus 83 ---~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~----~~gvkr~V~~SS~~vyg~~~~~~~~~~E------- 148 (520)
...|+++++|+.............+|..+...+.+... +........+++........... +...
T Consensus 58 ~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~ 136 (257)
T d1fjha_ 58 KCSKGMDGLVLCAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKN-PLALALEAGEE 136 (257)
T ss_dssp TCTTCCSEEEECCCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGC-TTHHHHHHTCH
T ss_pred HhCCCCcEEEEcCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhhhh-hhhhhccCCcE
Confidence 24799999999866666677788888888877766543 33444555555443321111000 0000
Q ss_pred -------CccCCCCCCChHHHHHHHHHHHHHHhcCC---CCceEEEEecCccccCCCCCchHHHHHHhcCCCceEEecCC
Q 010005 149 -------TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSG 218 (520)
Q Consensus 149 -------~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~~g~~~~i~g~g 218 (520)
.......+...|+.+|+..+.+.+.++.+ +|+++.++.||.+-.|........ -...+ .+....
T Consensus 137 ~~i~s~~~~~~~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~----~~~~~--~~~~~~ 210 (257)
T d1fjha_ 137 AKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQD----PRYGE--SIAKFV 210 (257)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC---------------------------CC
T ss_pred EEEeeehhccCCCcchHHHHHHhhhhhccccccccccccccccccccccCCcCChhHHhhcCC----HHHHH--HHHhcC
Confidence 00001112346999999999998887533 789999999999876543211110 00000 000011
Q ss_pred CcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCC
Q 010005 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (520)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~ 258 (520)
.+..-+...+|+|.++..++. +......|+.+.+.++
T Consensus 211 ~PlgR~g~p~eva~~v~fL~S---~~s~~itG~~i~vDGG 247 (257)
T d1fjha_ 211 PPMGRRAEPSEMASVIAFLMS---PAASYVHGAQIVIDGG 247 (257)
T ss_dssp CSTTSCCCTHHHHHHHHHHTS---GGGTTCCSCEEEESTT
T ss_pred CCCCCCcCHHHHHHHHHHHhC---chhCCccCceEEeCCC
Confidence 122335678999999998774 1134578999999876
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.07 E-value=4.1e-10 Score=110.72 Aligned_cols=168 Identities=7% Similarity=-0.042 Sum_probs=107.0
Q ss_pred CCeEEEEc--CCChhHHHHHHHHHhcCCcEEEEecCCcccc-------cCCCCCCCCCCCCCC-CCCcEEEE--------
Q 010005 8 PRTCVVLN--GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQ-------LDPSESNSLLPDSLS-SGRAEYHQ-------- 69 (520)
Q Consensus 8 ~~~ILVtG--atGfIG~~lv~~L~~~g~~~V~~~D~~~~~~-------l~r~~~~~~l~~~~~-~~~v~~~~-------- 69 (520)
+|.+|||| ++.-||..+++.|.++| .+|.+.++..... ..+... ........ ........
T Consensus 2 ~kVAlITGaa~s~GIG~aiA~~la~~G-A~V~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (329)
T d1uh5a_ 2 EDICFIAGIGDTNGYGWGIAKELSKRN-VKIIFGIWPPVYNIFMKNYKNGKFDN-DMIIDKDKKMNILDMLPFDASFDTA 79 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTT-CEEEEEECGGGHHHHHHHHHTTTTTG-GGEETTTEECCEEEEEECCTTCSSG
T ss_pred CcEEEEeCCCCCChHHHHHHHHHHHcC-CEEEEEeCchhhhhhhHHHHHHhhhh-HHHHHHHhhhhhhhcccccceehhh
Confidence 57899999 44689999999999999 5888855422100 000000 00000000 00112222
Q ss_pred ------------ecCCCHHHHHHH-------HcCCCEEEEcccCC---------CCCcchhhHHhhhHHHHHHHHHHHHH
Q 010005 70 ------------VDVRDISQIKKV-------LEGASTVFYVDATD---------LNTDDFYNCYMIIVQGAKNVVTACRE 121 (520)
Q Consensus 70 ------------~Dl~d~~~l~~~-------l~~~D~Vih~aa~~---------~~~~~~~~~~~~Nv~gt~~ll~aa~~ 121 (520)
+|+.+.++++++ +.+.|++||.||.. ....++...+++|+.++.++.+++..
T Consensus 80 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~ 159 (329)
T d1uh5a_ 80 NDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVN 159 (329)
T ss_dssp GGCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGG
T ss_pred cccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHh
Confidence 245554433333 34689999998862 12345777899999999999998876
Q ss_pred C--CCCEEEEeecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC----CCCceEEEEecCccc
Q 010005 122 C--KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN----IDGLLTCALRPSNVF 191 (520)
Q Consensus 122 ~--gvkr~V~~SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~----~~gi~~~ilRp~~vy 191 (520)
. +-.++|.+||.+.... -+.+...|+.+|+..|.+.+.++. ++|+++.++.||.+-
T Consensus 160 ~m~~~GsIv~iss~~~~~~--------------~p~y~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i~ 221 (329)
T d1uh5a_ 160 IMKPQSSIISLTYHASQKV--------------VPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLK 221 (329)
T ss_dssp GEEEEEEEEEEECGGGTSC--------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCC
T ss_pred hcccccccccceeehhccc--------------ccccchhhhhhhccccccchhhHHHHhcccCcEEEEEecCccc
Confidence 5 1247899988765310 112345799999999999887753 368999999999774
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.05 E-value=2e-09 Score=102.06 Aligned_cols=220 Identities=12% Similarity=0.008 Sum_probs=131.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCC----HHHHHHH---
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD----ISQIKKV--- 81 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d----~~~l~~~--- 81 (520)
+..|||||++-||.+++++|+++| .+|++.|+........- ..++. ............|..+ .+.+.++
T Consensus 2 ~vAlVTGas~GIG~aia~~la~~G-~~Vvi~~r~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (266)
T d1mxha_ 2 PAAVITGGARRIGHSIAVRLHQQG-FRVVVHYRHSEGAAQRL--VAELN-AARAGSAVLCKGDLSLSSSLLDCCEDIIDC 77 (266)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHH--HHHHH-HHSTTCEEEEECCCSSSTTHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCchHHHHHH--HHHHH-hhcCCceEEEecccccchhHHHHHHHHHHH
Confidence 368999999999999999999999 59999654321000000 00000 0112345566666654 2333332
Q ss_pred ----HcCCCEEEEcccCCCCC------------------cchhhHHhhhHHHHHHHHHHHHHCC---------CCEEEEe
Q 010005 82 ----LEGASTVFYVDATDLNT------------------DDFYNCYMIIVQGAKNVVTACRECK---------VRRLVYN 130 (520)
Q Consensus 82 ----l~~~D~Vih~aa~~~~~------------------~~~~~~~~~Nv~gt~~ll~aa~~~g---------vkr~V~~ 130 (520)
+.+.|++||.||..... ..+......|..+...........- ...++.+
T Consensus 78 ~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (266)
T d1mxha_ 78 SFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNL 157 (266)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEE
T ss_pred HHHHhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhh
Confidence 33699999999972110 1122344555555555555444321 2245555
Q ss_pred ecccccccCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcC---CCCceEEEEecCccccCCCCCchHHHHHHhc
Q 010005 131 STADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAK 207 (520)
Q Consensus 131 SS~~vyg~~~~~~~~~~E~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~vyGp~~~~~~~~l~~~~~ 207 (520)
|+..... +......|+.||+..+.+.+.++. .+|+++..+.||.+..+.... ....+...
T Consensus 158 ~~~~~~~---------------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~~~~--~~~~~~~~ 220 (266)
T d1mxha_ 158 CDAMTDL---------------PLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAMP--QETQEEYR 220 (266)
T ss_dssp CCGGGGS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCSSSC--HHHHHHHH
T ss_pred hhccccc---------------cCcchhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccccCC--HHHHHHHH
Confidence 5544321 223467899999999988777643 378999999999987654322 23333333
Q ss_pred CCCceEEecCCCcccccccHHHHHHHHHHHHHhhhcccccCCCceEEEeCCCC
Q 010005 208 PGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (520)
Q Consensus 208 ~g~~~~i~g~g~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~~g~~yni~~~~~ 260 (520)
...+. | +-+...+|+|.+++.++.. ......|+.+.+.++-.
T Consensus 221 ~~~pl-----~---r~~~~peeva~~v~fL~s~---~s~~itG~~i~vDGG~~ 262 (266)
T d1mxha_ 221 RKVPL-----G---QSEASAAQIADAIAFLVSK---DAGYITGTTLKVDGGLI 262 (266)
T ss_dssp TTCTT-----T---SCCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred hcCCC-----C---CCCCCHHHHHHHHHHHhCc---hhCCccCCeEEECccHh
Confidence 33221 1 2235699999999988851 12346899999988653
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=98.64 E-value=5.4e-09 Score=94.18 Aligned_cols=81 Identities=21% Similarity=0.193 Sum_probs=62.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCC-CCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPD-SLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~-~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
.++|+|+||||+|.||+.+++.|.++| .+|+++++. .++. .+.+ .....++....+|+.|.+++.+++.
T Consensus 21 l~gK~vlItGasgGIG~~ia~~la~~G-~~V~~~~r~--------~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 91 (191)
T d1luaa1 21 VKGKKAVVLAGTGPVGMRSAALLAGEG-AEVVLCGRK--------LDKAQAAADSVNKRFKVNVTAAETADDASRAEAVK 91 (191)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESS--------HHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhhc-cchhhcccc--------hHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhc
Confidence 468999999999999999999999999 599995543 2210 0000 0112345678899999999999999
Q ss_pred CCCEEEEcccCC
Q 010005 84 GASTVFYVDATD 95 (520)
Q Consensus 84 ~~D~Vih~aa~~ 95 (520)
++|+|||+|+..
T Consensus 92 ~iDilin~Ag~g 103 (191)
T d1luaa1 92 GAHFVFTAGAIG 103 (191)
T ss_dssp TCSEEEECCCTT
T ss_pred CcCeeeecCccc
Confidence 999999999873
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.11 E-value=4.8e-06 Score=70.50 Aligned_cols=113 Identities=13% Similarity=0.087 Sum_probs=78.2
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCEE
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~V 88 (520)
||.|+||+|.+|++++..|..+|. .+++.+|+.... ... ..+.. .........-+ ......+.++++|+|
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~----~~a-~Dl~~---~~~~~~~~~~~-~~~~~~~~~~~aDiv 72 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP----GVA-ADLSH---IETRATVKGYL-GPEQLPDCLKGCDVV 72 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHH----HHH-HHHTT---SSSSCEEEEEE-SGGGHHHHHTTCSEE
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccc----hhh-HHHhh---hhhhcCCCeEE-cCCChHHHhCCCCEE
Confidence 799999999999999999998875 579998875311 000 00110 01111122222 234567788999999
Q ss_pred EEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEee
Q 010005 89 FYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131 (520)
Q Consensus 89 ih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~S 131 (520)
|.+||. .....+.....+.|+...+.+++.+.+++.+-++.+-
T Consensus 73 Vitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivv 116 (144)
T d1mlda1 73 VIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICII 116 (144)
T ss_dssp EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEEC
T ss_pred EECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 999997 3444677889999999999999999999855444443
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.90 E-value=9.4e-06 Score=67.61 Aligned_cols=94 Identities=15% Similarity=0.139 Sum_probs=66.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHH-HcCCCE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAST 87 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~-l~~~D~ 87 (520)
|+|+|.|+ |.+|+.+++.|.++| ++|+++|.++.. ........+...+.||..|++.+.++ ++++|+
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g-~~v~vid~d~~~----------~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~ 68 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKG-HDIVLIDIDKDI----------CKKASAEIDALVINGDCTKIKTLEDAGIEDADM 68 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCHHH----------HHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CCcceecCChhh----------hhhhhhhhhhhhccCcccchhhhhhcChhhhhh
Confidence 79999996 999999999999999 599997765421 00000112578999999999988887 578999
Q ss_pred EEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEE
Q 010005 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (520)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V 128 (520)
++-+.. +. +.|+. +...+++.++++.|
T Consensus 69 vv~~t~------~d----~~N~~----~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 69 YIAVTG------KE----EVNLM----SSLLAKSYGINKTI 95 (132)
T ss_dssp EEECCS------CH----HHHHH----HHHHHHHTTCCCEE
T ss_pred hcccCC------cH----HHHHH----HHHHHHHcCCceEE
Confidence 986542 11 34443 33356778887766
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=97.86 E-value=9.2e-06 Score=68.91 Aligned_cols=113 Identities=12% Similarity=0.085 Sum_probs=71.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCC-CCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPD-SLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~-~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
.|||.|+|+ |++|+.++..|..+|. .+|+++|+.... .+.... .+.+ ...........+|. + .++++
T Consensus 5 ~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~--~~g~a~-Dl~~a~~~~~~~~~~~~d~---~----~~~~a 73 (146)
T d1ez4a1 5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDR--TKGDAL-DLEDAQAFTAPKKIYSGEY---S----DCKDA 73 (146)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHH--HHHHHH-HHHGGGGGSCCCEEEECCG---G----GGTTC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccch--hHHHHH-HHhccccccCCceEeeccH---H----Hhccc
Confidence 579999995 9999999999999873 489998876421 000000 0000 00112334555554 2 35789
Q ss_pred CEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEee
Q 010005 86 STVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131 (520)
Q Consensus 86 D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~S 131 (520)
|+||.+|+. .....+.......|+.-.+.+++.+.+++.+-++.+-
T Consensus 74 divvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivv 120 (146)
T d1ez4a1 74 DLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVA 120 (146)
T ss_dssp SEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 999999988 3344567788899999999999999999865554443
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.75 E-value=3.9e-05 Score=65.51 Aligned_cols=121 Identities=8% Similarity=0.022 Sum_probs=76.6
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC--CCCCCcEEEEecCCCHHHHHH
Q 010005 3 FDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 3 ~~~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~--~~~~~v~~~~~Dl~d~~~l~~ 80 (520)
+...+.+||.|+|+ |.+|+.++..|...+..+++++|..... ..... ..+.+. ........... ...++
T Consensus 2 ~~~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~--~~g~a-~Dl~~~~~~~~~~~~~~~~-----~~~~~ 72 (154)
T d1pzga1 2 ALVQRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGM--PEGKA-LDLSHVTSVVDTNVSVRAE-----YSYEA 72 (154)
T ss_dssp CCCSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSH--HHHHH-HHHHHHHHHTTCCCCEEEE-----CSHHH
T ss_pred ccccCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEecccc--chhHH-HHHhhhccccCCeeEEecc-----Cchhh
Confidence 33456789999996 9999999998888886689998865421 00000 000000 00001111111 12356
Q ss_pred HHcCCCEEEEcccCCC------CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeec
Q 010005 81 VLEGASTVFYVDATDL------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (520)
Q Consensus 81 ~l~~~D~Vih~aa~~~------~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS 132 (520)
.++++|+|+-.++... ...+.......|+.-.+.+++.+.+++.+-++.+-|
T Consensus 73 ~~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs 130 (154)
T d1pzga1 73 ALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 130 (154)
T ss_dssp HHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred hhcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 7789999999998721 113567788999999999999999998655554443
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.74 E-value=3.9e-05 Score=64.78 Aligned_cols=116 Identities=9% Similarity=0.041 Sum_probs=76.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCC-CCCCCC--CCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSES-NSLLPD--SLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~-~~~l~~--~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
|||.|+||+|.+|++++..|..+|. .++..+|+... +.+... ...+.+ .......+....--.|. +.+++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~--~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~----~~l~~ 74 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHS--INKLEGLREDIYDALAGTRSDANIYVESDENL----RIIDE 74 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGG--HHHHHHHHHHHHHHHTTSCCCCEEEEEETTCG----GGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhh--hHhhhcccccchhcccccccCCccccCCcchH----HHhcc
Confidence 6899999999999999999999883 48999887542 111000 000110 01112233322211122 35678
Q ss_pred CCEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEe
Q 010005 85 ASTVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130 (520)
Q Consensus 85 ~D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~ 130 (520)
+|+||-+||. .....+....++.|..-.+.+++...+++-+.++.+
T Consensus 75 aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~iivV 121 (145)
T d1hyea1 75 SDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVI 121 (145)
T ss_dssp CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred ceEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEEEE
Confidence 9999999997 344456788999999999999999999875554433
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=3.6e-05 Score=64.97 Aligned_cols=114 Identities=17% Similarity=0.122 Sum_probs=73.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhc-C-CcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLEL-G-KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~-g-~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
|||.|+|++|.+|++++..|..+ + ..++..+|+... .+... -.+.+........ ...+-.+ .+.++++|
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~---~~g~a-~Dl~h~~~~~~~~-~~~~~~~----~~~~~~aD 71 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV---TPGVA-VDLSHIPTAVKIK-GFSGEDA----TPALEGAD 71 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTT---HHHHH-HHHHTSCSSCEEE-EECSSCC----HHHHTTCS
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccccc---chhHH-HHHHCCccccCCc-EEEcCCC----ccccCCCC
Confidence 79999999999999999887543 3 158999886431 11000 0111111111111 1122222 34678999
Q ss_pred EEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCE-EEEee
Q 010005 87 TVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVRR-LVYNS 131 (520)
Q Consensus 87 ~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr-~V~~S 131 (520)
+||-+||. .....+.....+.|..-.+.+.+.+.+++.+. ++.+|
T Consensus 72 vvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvt 118 (145)
T d2cmda1 72 VVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT 118 (145)
T ss_dssp EEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred EEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 99999997 44556778899999999999999999987443 44444
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.66 E-value=3.6e-05 Score=65.00 Aligned_cols=98 Identities=15% Similarity=0.159 Sum_probs=56.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCC---cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGK---CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~---~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
|++|.|.||||++|+.+++.|++... .+++.+... ++..+ .... ..-.....++.+.+ .+++
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss------~s~g~--~~~~---~~~~~~~~~~~~~~----~~~~ 65 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTS------QLGQA--APSF---GGTTGTLQDAFDLE----ALKA 65 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS------STTSB--CCGG---GTCCCBCEETTCHH----HHHT
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecc------ccccc--cccc---cCCceeeecccchh----hhhc
Confidence 46999999999999999998887632 246653221 11111 0000 01112223333433 3578
Q ss_pred CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccccc
Q 010005 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (520)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vy 136 (520)
+|+||.+++. .-+..+...+.+.|.+ .+.++..+.|
T Consensus 66 ~DivF~a~~~---------------~~s~~~~~~~~~~g~~-~~VID~Ss~f 101 (146)
T d1t4ba1 66 LDIIVTCQGG---------------DYTNEIYPKLRESGWQ-GYWIDAASSL 101 (146)
T ss_dssp CSEEEECSCH---------------HHHHHHHHHHHHTTCC-CEEEECSSTT
T ss_pred CcEEEEecCc---------------hHHHHhhHHHHhcCCC-eecccCCccc
Confidence 9999988752 2245677777788863 3445555555
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.51 E-value=0.00022 Score=58.98 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=54.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHH-HcCCCE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAST 87 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~-l~~~D~ 87 (520)
|+++|.| .|.+|+++++.|.++|+ +|+++|.+... .+.+...+...+.+|.+|++.+.++ ++++|+
T Consensus 1 k~~iIiG-~G~~G~~la~~L~~~g~-~vvvid~d~~~-----------~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~ 67 (134)
T d2hmva1 1 KQFAVIG-LGRFGGSIVKELHRMGH-EVLAVDINEEK-----------VNAYASYATHAVIANATEENELLSLGIRNFEY 67 (134)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHTTC-CCEEEESCHHH-----------HHHTTTTCSEEEECCTTCTTHHHHHTGGGCSE
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC-eEEEecCcHHH-----------HHHHHHhCCcceeeecccchhhhccCCccccE
Confidence 5788997 59999999999999995 99997765421 0111234567889999999988887 788998
Q ss_pred EEEcc
Q 010005 88 VFYVD 92 (520)
Q Consensus 88 Vih~a 92 (520)
||=+.
T Consensus 68 vi~~~ 72 (134)
T d2hmva1 68 VIVAI 72 (134)
T ss_dssp EEECC
T ss_pred EEEEc
Confidence 87544
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.50 E-value=9e-05 Score=62.14 Aligned_cols=113 Identities=9% Similarity=-0.057 Sum_probs=74.8
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCC-CCCCCCcEEEEecCCCHHHHHHHHcCCCE
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPD-SLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~-~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~ 87 (520)
||.|+||+|.+|++++..|..++. .++..+|+.......+... -.+.+ ...........+|. + .++++|+
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a-~Dl~~~~~~~~~~~i~~~~~---~----~~~~aDi 73 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQA-ADTNHGIAYDSNTRVRQGGY---E----DTAGSDV 73 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHH-HHHHHHHTTTCCCEEEECCG---G----GGTTCSE
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceee-cchhhcccccCCceEeeCCH---H----HhhhcCE
Confidence 799999999999999999999874 3699988643110000000 01111 00122344444443 2 2569999
Q ss_pred EEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEe
Q 010005 88 VFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYN 130 (520)
Q Consensus 88 Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~ 130 (520)
|+-.||. .....+.....+.|..-.+.+.+...+++-+ .++.+
T Consensus 74 VvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivv 118 (142)
T d1o6za1 74 VVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTT 118 (142)
T ss_dssp EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEC
T ss_pred EEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 9999987 3444678889999999999999999999744 34433
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.49 E-value=0.00024 Score=59.48 Aligned_cols=107 Identities=13% Similarity=0.085 Sum_probs=68.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCC-CCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLS-SGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~~~-~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
+||.|+|+ |.+|+.++..|+.++. .+++.+|+.... ..... ..+.+... ........+| . +.++++|
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~--~~g~a-~Dl~~~~~~~~~~~~~~~~---~----~~~~~ad 70 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEK--AIGEA-MDINHGLPFMGQMSLYAGD---Y----SDVKDCD 70 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC-----CCHHH-HHHTTSCCCTTCEEEC--C---G----GGGTTCS
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCc--cceee-eeeccCcccCCCeeEeeCc---H----HHhCCCc
Confidence 58999996 9999999999999874 479998876531 11100 01111111 1223333332 2 3467899
Q ss_pred EEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCE
Q 010005 87 TVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVRR 126 (520)
Q Consensus 87 ~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr 126 (520)
+|+-+|+. .....+.......|+.-.+.+++.+.+++.+-
T Consensus 71 ivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~a 111 (142)
T d1y6ja1 71 VIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHG 111 (142)
T ss_dssp EEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred eEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCc
Confidence 99999987 33446778889999999999999999987543
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.44 E-value=0.00016 Score=62.86 Aligned_cols=118 Identities=13% Similarity=-0.016 Sum_probs=73.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCC---c---EEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHH
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGK---C---IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~---~---~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
..||.||||+|.||++++..|.+.+. . .++.+|+........... -.+.. ...+....+.. .+ ...+.
T Consensus 24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~-mdl~d-~a~~~~~~~~~--~~--~~~~~ 97 (175)
T d7mdha1 24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVA-MELED-SLYPLLREVSI--GI--DPYEV 97 (175)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHH-HHHHT-TTCTTEEEEEE--ES--CHHHH
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchh-hhhcc-cccccccCccc--cc--cchhh
Confidence 34899999999999999999987431 1 466655533100000000 00000 01112222211 11 23678
Q ss_pred HcCCCEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHC-C-CCEEEEee
Q 010005 82 LEGASTVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACREC-K-VRRLVYNS 131 (520)
Q Consensus 82 l~~~D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-g-vkr~V~~S 131 (520)
++++|+||-.||. .............|..-.+.+.+++.++ . --+++.+|
T Consensus 98 ~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~ 150 (175)
T d7mdha1 98 FEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG 150 (175)
T ss_dssp TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred ccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec
Confidence 8999999999998 5566788899999999999999999995 3 22555555
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.40 E-value=0.0004 Score=58.57 Aligned_cols=113 Identities=14% Similarity=0.136 Sum_probs=75.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCC--CCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~--~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
..+||.|+|+ |.+|++++..|..+|. .++..+|+.... .+... ..+.+ ............|. +.++
T Consensus 5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~--~~g~a-~Dl~~~~~~~~~~~~~~~~d~-------~~l~ 73 (148)
T d1ldna1 5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESK--AIGDA-MDFNHGKVFAPKPVDIWHGDY-------DDCR 73 (148)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHH--HHHHH-HHHHHHTTSSSSCCEEEECCG-------GGTT
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeecccc--ccchh-ccHhhCccccCCCeEEEECCH-------HHhc
Confidence 4679999996 9999999999999874 479998875421 00000 00110 11122344444443 3467
Q ss_pred CCCEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEe
Q 010005 84 GASTVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYN 130 (520)
Q Consensus 84 ~~D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~ 130 (520)
++|+||..++. .............|+.-.+.+++.+.+++.+ .++.+
T Consensus 74 daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivv 122 (148)
T d1ldna1 74 DADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVA 122 (148)
T ss_dssp TCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEEC
T ss_pred cceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEe
Confidence 89999999988 3444666788899999999999999998744 34433
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.36 E-value=0.00019 Score=60.27 Aligned_cols=110 Identities=13% Similarity=0.048 Sum_probs=72.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCC--CCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~--~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
|||.|+|| |.+|++++..|...|. .+++.+|+.... .+.... .+... ........... .|. +.++++
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~--~~~~~~-d~~~~~~~~~~~~~i~~~--~~~----~~~~da 70 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGI--PQGKAL-DMYESGPVGLFDTKVTGS--NDY----ADTANS 70 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSH--HHHHHH-HHHTTHHHHTCCCEEEEE--SCG----GGGTTC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCceEEEecccccc--chhhhh-hhhcccchhcccceEEec--CCH----HHhcCC
Confidence 68999995 9999999999998873 489998876421 000000 00000 00112333322 222 246789
Q ss_pred CEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEE
Q 010005 86 STVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (520)
Q Consensus 86 D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V 128 (520)
|+|+-+||. .....+.....+.|..-.+.+++.+.+++.+-++
T Consensus 71 dvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aiv 114 (142)
T d1guza1 71 DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPII 114 (142)
T ss_dssp SEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEE
T ss_pred eEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEE
Confidence 999999997 3444567788999999999999999988754444
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.31 E-value=0.0011 Score=55.57 Aligned_cols=95 Identities=17% Similarity=0.138 Sum_probs=53.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCC---cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGK---CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~---~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
|||.|.||||++|+.+++.|++..+ .++..+.. .++.. ..... . .+ .....+..|. ..++++
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss------~~~~g--k~~~~-~-~~-~~~~~~~~~~----~~~~~~ 65 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFST------SQIGV--PAPNF-G-KD-AGMLHDAFDI----ESLKQL 65 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEES------SCCSS--BCCCS-S-SC-CCBCEETTCH----HHHTTC
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecc------ccccc--ccccc-C-Cc-ceeeecccch----hhhccc
Confidence 6899999999999999999887542 24544221 11111 11111 1 11 1111123333 346789
Q ss_pred CEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEeecc
Q 010005 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTA 133 (520)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~SS~ 133 (520)
|+||.+... .-+..+...+.+.|.+ .+|=.||.
T Consensus 66 DvvF~alp~---------------~~s~~~~~~l~~~g~~~~VIDlSsd 99 (147)
T d1mb4a1 66 DAVITCQGG---------------SYTEKVYPALRQAGWKGYWIDAAST 99 (147)
T ss_dssp SEEEECSCH---------------HHHHHHHHHHHHTTCCSEEEESSST
T ss_pred cEEEEecCc---------------hHHHHHhHHHHHcCCceEEEeCCcc
Confidence 999987742 1234577777888864 35544544
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.21 E-value=0.0021 Score=54.31 Aligned_cols=114 Identities=12% Similarity=0.027 Sum_probs=72.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCc---E---EEEecCCcccccCCCCCCC-CC---CCCCCCCCcEEEEecCCCHHH
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKC---I---VRVTDSTQSLQLDPSESNS-LL---PDSLSSGRAEYHQVDVRDISQ 77 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~---~---V~~~D~~~~~~l~r~~~~~-~l---~~~~~~~~v~~~~~Dl~d~~~ 77 (520)
.|||.|+||+|++|++++..|...+.. . ...+|.. +..... .. .+.........+...- .
T Consensus 4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 73 (154)
T d1y7ta1 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIP------QAMKALEGVVMELEDCAFPLLAGLEATD----D 73 (154)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCG------GGHHHHHHHHHHHHTTTCTTEEEEEEES----C
T ss_pred CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccc------cchhhHcCchhhhhccccccccccccCC----c
Confidence 579999999999999999999987532 1 2232221 111000 00 0001112233333322 2
Q ss_pred HHHHHcCCCEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHC-CC-CEEEEee
Q 010005 78 IKKVLEGASTVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACREC-KV-RRLVYNS 131 (520)
Q Consensus 78 l~~~l~~~D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-gv-kr~V~~S 131 (520)
..+.++++|+||-+||. .....+.......|+.-.+.+.+.+.+. .- ..++.+|
T Consensus 74 ~~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvs 130 (154)
T d1y7ta1 74 PKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVG 130 (154)
T ss_dssp HHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred hhhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence 25778899999999998 4555678889999999999999999985 32 2455555
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.21 E-value=0.00023 Score=59.47 Aligned_cols=111 Identities=15% Similarity=0.071 Sum_probs=73.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCC-CCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPD-SLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~-~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
|||.|+|+ |.+|++++..|+.++. .++..+|+.... .+.... .+.. ...........+|. +.++++|
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~--~~g~~~-Dl~~~~~~~~~~~~~~~~~-------~~~~~ad 69 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKR--AEGDAL-DLIHGTPFTRRANIYAGDY-------ADLKGSD 69 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHH--HHHHHH-HHHHHGGGSCCCEEEECCG-------GGGTTCS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeccccc--ccchhc-cccccccccccccccCCcH-------HHhcCCC
Confidence 69999996 9999999998888864 479998875421 000000 0000 00012334444332 2367999
Q ss_pred EEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEe
Q 010005 87 TVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130 (520)
Q Consensus 87 ~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~ 130 (520)
+|+-+|+. .............|..-.+.+++...+++.+-++.+
T Consensus 70 ivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aiviv 114 (140)
T d1a5za1 70 VVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIV 114 (140)
T ss_dssp EEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred EEEEecccccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEE
Confidence 99999988 444466778889999999999999999875444443
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.16 E-value=0.00025 Score=59.59 Aligned_cols=31 Identities=29% Similarity=0.289 Sum_probs=25.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCC--cEEEE
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGK--CIVRV 38 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~--~~V~~ 38 (520)
.|+|.|.||||++|+.+++.|.+++| .++..
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~ 34 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHL 34 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEE
Confidence 48999999999999999999987654 34555
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.08 E-value=0.002 Score=54.40 Aligned_cols=119 Identities=13% Similarity=0.017 Sum_probs=72.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCC------cEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHH
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGK------CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~------~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (520)
++|||.|+||+|.+|++++..|...+. .+++.+|............ ..+.. ........+.. .+. ..+
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~-~~~~~-~~~~~~~~~~~--~~~--~~~ 75 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVL-MELQD-CALPLLKDVIA--TDK--EEI 75 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHH-HHHHH-TCCTTEEEEEE--ESC--HHH
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhh-hhhcc-ccccccccccc--Ccc--ccc
Confidence 468999999999999999999986532 2466655432100000000 00000 01112222222 121 256
Q ss_pred HHcCCCEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHC-CCC-EEEEee
Q 010005 81 VLEGASTVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACREC-KVR-RLVYNS 131 (520)
Q Consensus 81 ~l~~~D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-gvk-r~V~~S 131 (520)
.++++|+||-.+|. .....+.....+.|..-.+.+.+.+.++ +-. .++.+|
T Consensus 76 ~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvs 129 (154)
T d5mdha1 76 AFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVG 129 (154)
T ss_dssp HTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred ccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEec
Confidence 78899999999998 4444566778899999999999998774 432 344444
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.07 E-value=0.00031 Score=58.85 Aligned_cols=111 Identities=6% Similarity=0.047 Sum_probs=66.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC--CCCCCcEEE-EecCCCHHHHHHHHcCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYH-QVDVRDISQIKKVLEGA 85 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~--~~~~~v~~~-~~Dl~d~~~l~~~l~~~ 85 (520)
+||.|+|+ |.+|++++..|..++..++..+|+.... ..... ..+... ......... ..|. + .++++
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~--~~~~~-~Dl~~~~~~~~~~~~i~~~~d~---~----~~~~a 70 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGV--PQGKA-LDLYEASPIEGFDVRVTGTNNY---A----DTANS 70 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSH--HHHHH-HHHHTTHHHHTCCCCEEEESCG---G----GGTTC
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeecccc--chhHH-HHhhccccccCCCCEEEecCcH---H----HhcCC
Confidence 68999995 9999999999988886689998764421 00000 000000 001112222 2232 2 35689
Q ss_pred CEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEe
Q 010005 86 STVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130 (520)
Q Consensus 86 D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~ 130 (520)
|+||-+||. .....+.......|+.-.+.+++...+++.+-++.+
T Consensus 71 dvvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aiviv 116 (142)
T d1uxja1 71 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIM 116 (142)
T ss_dssp SEEEECCSCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEE
T ss_pred CEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEE
Confidence 999999997 333455667788999999999999999875444433
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.05 E-value=0.00048 Score=57.60 Aligned_cols=112 Identities=12% Similarity=0.005 Sum_probs=73.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCC--CCCCCcEEEE-ecCCCHHHHHHHHcC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQ-VDVRDISQIKKVLEG 84 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~--~~~~~v~~~~-~Dl~d~~~l~~~l~~ 84 (520)
|||.|+|+ |.+|++++..|..+|. .++..+|+.... .+.... .+.+. .......... .|. +.+++
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~--~~g~al-Dl~~~~~~~~~~~~i~~~~d~-------~~~~~ 69 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDL--AVGEAM-DLAHAAAGIDKYPKIVGGADY-------SLLKG 69 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHH--HHHHHH-HHHHHHHTTTCCCEEEEESCG-------GGGTT
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccch--hhHHHH-HHhhhccccCCCCccccCCCH-------HHhcc
Confidence 79999995 9999999999988763 479998876531 110000 00000 0011122222 232 25678
Q ss_pred CCEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEee
Q 010005 85 ASTVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131 (520)
Q Consensus 85 ~D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~S 131 (520)
+|+||-.|+. .....+.......|..-.+.+.+.+++.+.+-++.+-
T Consensus 70 adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivv 117 (142)
T d1ojua1 70 SEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVV 117 (142)
T ss_dssp CSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEEC
T ss_pred ccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEe
Confidence 9999999986 4445677888999999999999999998754444333
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.01 E-value=0.00065 Score=56.81 Aligned_cols=110 Identities=13% Similarity=0.069 Sum_probs=72.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCC-CCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~~-~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
.||.|+|+ |.+|++++..|..+|. .++..+|+.... .+.... .+.+.. ..........+ |. +.++++|
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~--~~g~a~-Dl~~a~~~~~~~~i~~~~--~~----~~~~daD 71 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKER--VEAEVL-DMQHGSSFYPTVSIDGSD--DP----EICRDAD 71 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHH--HHHHHH-HHHHTGGGSTTCEEEEES--CG----GGGTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEecccc--chhHHH-HHHhccccCCCceeecCC--CH----HHhhCCc
Confidence 58999996 9999999999998874 479998875421 110000 011000 01122333222 22 2366899
Q ss_pred EEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEE
Q 010005 87 TVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (520)
Q Consensus 87 ~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V 128 (520)
+||-.||. .....+.......|..-.+.+++.+.+++.+-++
T Consensus 72 vVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ 114 (143)
T d1llda1 72 MVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIY 114 (143)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred EEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEE
Confidence 99999998 4445677789999999999999999998754333
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.01 E-value=0.00084 Score=56.58 Aligned_cols=113 Identities=8% Similarity=0.038 Sum_probs=71.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCC--CCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~--~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
.+||.|+|+ |.+|++++..|..++..++..+|+.... ..... ..+.+ ............| +. +.++++
T Consensus 3 ~~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~--~~g~a-~Dl~~~~~~~~~~~~v~~~~--~~----~~~~~a 72 (150)
T d1t2da1 3 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNM--PHGKA-LDTSHTNVMAYSNCKVSGSN--TY----DDLAGA 72 (150)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSH--HHHHH-HHHHTHHHHHTCCCCEEEEC--CG----GGGTTC
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCc--ceeee-cchhhhccccCCCcEEEecc--cc----cccCCC
Confidence 469999995 9999999998888887789998865421 00000 00000 0001122222222 22 345689
Q ss_pred CEEEEcccCCC------CCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEe
Q 010005 86 STVFYVDATDL------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130 (520)
Q Consensus 86 D~Vih~aa~~~------~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~ 130 (520)
|+|+-+++... ...+.......|..-.+.+.+.+++.+.+-++.+
T Consensus 73 dvvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aiviv 123 (150)
T d1t2da1 73 DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIV 123 (150)
T ss_dssp SEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred cEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 99999999621 1234677899999999999999999875544433
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=97.00 E-value=0.0013 Score=57.09 Aligned_cols=32 Identities=13% Similarity=0.218 Sum_probs=27.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEe
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~ 39 (520)
|+||.|.|||||+|+.|++.|.+..+.++..+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l 32 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITAL 32 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEee
Confidence 58999999999999999999999875666653
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.95 E-value=0.00047 Score=59.46 Aligned_cols=75 Identities=20% Similarity=0.229 Sum_probs=53.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCE
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~ 87 (520)
.|+|+|.|| |.+|+++++.|.++|| +|++.|+... +.. .+.+. .+.......+..+.....+.+...|.
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g~-~V~v~dr~~~----~a~---~l~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~ 70 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSGI-KVTVACRTLE----SAK---KLSAG--VQHSTPISLDVNDDAALDAEVAKHDL 70 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTC-EEEEEESCHH----HHH---HHHTT--CTTEEEEECCTTCHHHHHHHHTTSSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEECChH----HHH---HHHhc--ccccccccccccchhhhHhhhhccce
Confidence 489999985 9999999999999995 9999665432 100 11111 12345556677777788888888999
Q ss_pred EEEccc
Q 010005 88 VFYVDA 93 (520)
Q Consensus 88 Vih~aa 93 (520)
++.+..
T Consensus 71 ~i~~~~ 76 (182)
T d1e5qa1 71 VISLIP 76 (182)
T ss_dssp EEECSC
T ss_pred eEeecc
Confidence 886653
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.75 E-value=0.0015 Score=55.46 Aligned_cols=114 Identities=14% Similarity=0.029 Sum_probs=74.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCC--CCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~--~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
+.+||.|+|+ |.+|+.++..|..+|. .++..+|+.... .+.... .+.+ ...........+|. + .++
T Consensus 19 ~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~--a~g~al-Dl~h~~~~~~~~~~~~~~d~---~----~~~ 87 (160)
T d1i0za1 19 PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDK--LKGEMM-DLQHGSLFLQTPKIVADKDY---S----VTA 87 (160)
T ss_dssp CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHH--HHHHHH-HHHHTGGGCCCSEEEECSSG---G----GGT
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccch--hHHHHH-HHhccccccCCCeEEeccch---h----hcc
Confidence 4579999995 9999999999999984 479998875421 110000 0000 01111222222333 2 366
Q ss_pred CCCEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEee
Q 010005 84 GASTVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (520)
Q Consensus 84 ~~D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~S 131 (520)
++|+|+..||. .....+.....+.|+.-.+.+++...+.+-+ -++.+|
T Consensus 88 ~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvt 137 (160)
T d1i0za1 88 NSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 137 (160)
T ss_dssp TCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred cccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 89999999998 3444677788999999999999999998754 344444
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=96.75 E-value=0.0019 Score=54.22 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=31.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
..+++||.|+||.|.+|+.+++.|.+.| ++|+++|+
T Consensus 6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G-~~V~~~d~ 41 (152)
T d2pv7a2 6 NSDIHKIVIVGGYGKLGGLFARYLRASG-YPISILDR 41 (152)
T ss_dssp CTTCCCEEEETTTSHHHHHHHHHHHTTT-CCEEEECT
T ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHcC-CCcEeccc
Confidence 3457899999999999999999999999 59999664
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.64 E-value=0.00085 Score=57.07 Aligned_cols=116 Identities=14% Similarity=0.053 Sum_probs=73.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCC--CCCCCCcEEEEecCCCHHHHHHH
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~--~~~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
.++..||.|+|+ |.+|++++..|..+|. .++..+|+.... .+... ..+.+ ............|. + .
T Consensus 16 ~~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~--a~g~a-lDl~~~~~~~~~~~~~~~~d~---~----~ 84 (159)
T d2ldxa1 16 KLSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDK--LRGEA-LDLQHGSLFLSTPKIVFGKDY---N----V 84 (159)
T ss_dssp CCCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHH--HHHHH-HHHHHTTTTCSCCEEEEESSG---G----G
T ss_pred cCCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchh--hhccH-HHHhCcchhcCCCeEEeccch---h----h
Confidence 344568999995 9999999999999874 479998865421 01000 00100 01111222333333 2 3
Q ss_pred HcCCCEEEEcccC-CCCCcchhhHHhhhHHHHHHHHHHHHHCCCC-EEEEee
Q 010005 82 LEGASTVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (520)
Q Consensus 82 l~~~D~Vih~aa~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk-r~V~~S 131 (520)
++++|+||-.||. .....+.....+.|+.-.+.+++...+++.+ .++.+|
T Consensus 85 ~~~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvt 136 (159)
T d2ldxa1 85 SANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVT 136 (159)
T ss_dssp GTTEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECS
T ss_pred hccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence 4689999999987 3444566677899999999999998888743 344333
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=96.61 E-value=0.0015 Score=55.52 Aligned_cols=32 Identities=22% Similarity=0.157 Sum_probs=28.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~ 42 (520)
|||+|+|+ |.+|+.++..|.+.|| +|+++++.
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~-~V~~~~r~ 32 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGH-EVQGWLRV 32 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC-ceEEEEcC
Confidence 79999996 9999999999999995 99996543
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.56 E-value=0.0047 Score=50.28 Aligned_cols=69 Identities=16% Similarity=0.265 Sum_probs=49.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEE-ecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRV-TDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~-~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~ 87 (520)
|||.|.|++|-.|+.+.+.+.++|+ ++.+ +|. +.. +.++++|+
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~-~l~~~id~--------~~~---------------------------~~~~~~DV 44 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGH-ELVLKVDV--------NGV---------------------------EELDSPDV 44 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEET--------TEE---------------------------EECSCCSE
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCC-eEEEEECC--------CcH---------------------------HHhccCCE
Confidence 6899999999999999999998995 6554 221 110 01246899
Q ss_pred EEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEE
Q 010005 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129 (520)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~ 129 (520)
||.+..+ .++.+.++.|.+.++ .+|.
T Consensus 45 vIDFS~p---------------~~~~~~l~~~~~~~~-p~Vi 70 (128)
T d1vm6a3 45 VIDFSSP---------------EALPKTVDLCKKYRA-GLVL 70 (128)
T ss_dssp EEECSCG---------------GGHHHHHHHHHHHTC-EEEE
T ss_pred EEEecCH---------------HHHHHHHHHHHhcCC-CEEE
Confidence 9988753 345678899999997 5553
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.52 E-value=0.001 Score=57.90 Aligned_cols=31 Identities=35% Similarity=0.578 Sum_probs=28.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEec
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD 40 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D 40 (520)
|||.|+||+|.+|++|++.|.+.|| +|++.+
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~-~V~l~~ 31 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGH-EIVVGS 31 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC-EEEEEE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCC-EEEEEE
Confidence 6899999999999999999999995 999943
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=96.49 E-value=0.0016 Score=54.48 Aligned_cols=110 Identities=15% Similarity=0.095 Sum_probs=68.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCC--CCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~~~~l~r~~~~~~l~~~--~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
|||.|+| +|.+|+.++..|+.+|. .+++.+|+.... .+... ..+.+. ...........|. + .++++
T Consensus 2 kKI~IIG-aG~VG~~~a~~l~~~~~~~elvL~Di~~~~--~~g~~-~Dl~~a~~~~~~~~~~~~~d~---~----~l~~a 70 (146)
T d1hyha1 2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAK--VKADQ-IDFQDAMANLEAHGNIVINDW---A----ALADA 70 (146)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHH--HHHHH-HHHHHHGGGSSSCCEEEESCG---G----GGTTC
T ss_pred CeEEEEC-cCHHHHHHHHHHHhcCCCceEEEEecccch--hhhHH-HhhhccccccCCccceeccCH---H----Hhccc
Confidence 7999999 59999999999998873 479998875431 00000 001110 0112233444432 2 35789
Q ss_pred CEEEEcccCC-----CCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEE
Q 010005 86 STVFYVDATD-----LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129 (520)
Q Consensus 86 D~Vih~aa~~-----~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~ 129 (520)
|+||-+||.. ....+.....+.|..-.+.+.+..++.+.+-++.
T Consensus 71 diVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivi 119 (146)
T d1hyha1 71 DVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLV 119 (146)
T ss_dssp SEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred cEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEE
Confidence 9999999862 1122345567889999999999999987544443
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=96.44 E-value=0.00098 Score=57.69 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=27.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEe
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~ 39 (520)
|+||.|.||||++|+.+++.|.+..+.++..+
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l 32 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYL 32 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEE
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEe
Confidence 57999999999999999999998765566653
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=96.37 E-value=0.0019 Score=55.09 Aligned_cols=94 Identities=16% Similarity=0.172 Sum_probs=56.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEE-EecCCcccccCCCCCCCCCCCCCC--CCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVR-VTDSTQSLQLDPSESNSLLPDSLS--SGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~-~~D~~~~~~l~r~~~~~~l~~~~~--~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
..+||.|.|++|-.|+.+++.+.+.+..++. ++|+..+..+..+ ..+... ..++ .+.-|+ ...++
T Consensus 3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d-----~~~~~~~~~~~~-~~~~~~------~~~~~ 70 (162)
T d1diha1 3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSD-----AGELAGAGKTGV-TVQSSL------DAVKD 70 (162)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCC-----TTCSSSSSCCSC-CEESCS------TTTTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccch-----hhhhhccccCCc-eeeccH------HHHhc
Confidence 3589999999999999999999987545644 4333221111111 111111 1111 123333 34556
Q ss_pred CCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEE
Q 010005 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (520)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V 128 (520)
.+|+||.+.- -.++...++.|.+.++ .+|
T Consensus 71 ~~DViIDFs~---------------p~~~~~~~~~a~~~~~-~~V 99 (162)
T d1diha1 71 DFDVFIDFTR---------------PEGTLNHLAFCRQHGK-GMV 99 (162)
T ss_dssp SCSEEEECSC---------------HHHHHHHHHHHHHTTC-EEE
T ss_pred ccceEEEecc---------------HHHHHHHHHHHHhccc-eeE
Confidence 8999998864 3455678899999997 455
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.15 E-value=0.0016 Score=57.78 Aligned_cols=33 Identities=21% Similarity=0.172 Sum_probs=29.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~ 43 (520)
|||.|.| .|++|..++..|.+.| ++|+++|.+.
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g-~~V~g~D~n~ 33 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARG-HEVIGVDVSS 33 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTT-CEEEEECSCH
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCC-CcEEEEeCCH
Confidence 6899996 9999999999999999 5999998764
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.13 E-value=0.011 Score=46.72 Aligned_cols=67 Identities=16% Similarity=0.284 Sum_probs=51.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc--CC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GA 85 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~--~~ 85 (520)
..||.|.| +|.+|+-++....+.| ++|+++|.+.+ .+. ..-.-+++.+|..|.+.+.+... ++
T Consensus 11 ~~kigIlG-gGQL~rMla~aA~~lG-~~v~v~d~~~~-----~PA--------~~va~~~i~~~~~d~~~l~~~~~~~~~ 75 (111)
T d1kjqa2 11 ATRVMLLG-SGELGKEVAIECQRLG-VEVIAVDRYAD-----APA--------MHVAHRSHVINMLDGDALRRVVELEKP 75 (111)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHTTT-CEEEEEESSTT-----CGG--------GGGSSEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEEe-CCHHHHHHHHHHHHCC-CEEEEEcCCCC-----Cch--------hhcCCeEEECCCCCHHHHHHHHHhhCC
Confidence 46899998 8999999999999999 59999765331 111 01123688999999999988874 67
Q ss_pred CEEE
Q 010005 86 STVF 89 (520)
Q Consensus 86 D~Vi 89 (520)
|+|-
T Consensus 76 DviT 79 (111)
T d1kjqa2 76 HYIV 79 (111)
T ss_dssp SEEE
T ss_pred ceEE
Confidence 9885
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.06 E-value=0.0033 Score=53.53 Aligned_cols=32 Identities=22% Similarity=0.186 Sum_probs=28.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~ 42 (520)
|||.|.| .|.+|+.+++.|.+.| ++|+++|+.
T Consensus 1 MkI~iIG-~G~mG~~lA~~l~~~g-~~V~~~d~~ 32 (165)
T d2f1ka2 1 MKIGVVG-LGLIGASLAGDLRRRG-HYLIGVSRQ 32 (165)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSC
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCC-CEEEEEECC
Confidence 6899997 6999999999999999 599996654
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.02 E-value=0.038 Score=41.73 Aligned_cols=87 Identities=22% Similarity=0.257 Sum_probs=57.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
-++++|+|.|. |--|.++++.|.++| .+|++.|.... .+. . ..+ ........+.. +. ..+.++
T Consensus 3 ~~~K~v~ViGl-G~sG~s~a~~L~~~g-~~v~~~D~~~~---~~~--~----~~~-~~~~~~~~~~~-~~----~~~~~~ 65 (93)
T d2jfga1 3 YQGKNVVIIGL-GLTGLSCVDFFLARG-VTPRVMDTRMT---PPG--L----DKL-PEAVERHTGSL-ND----EWLMAA 65 (93)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHHTT-CCCEEEESSSS---CTT--G----GGS-CTTSCEEESBC-CH----HHHHHC
T ss_pred cCCCEEEEEeE-CHHHHHHHHHHHHCC-CEEEEeeCCcC---chh--H----HHH-hhccceeeccc-ch----hhhccC
Confidence 35789999985 888999999999999 59999886432 111 1 111 12444555554 22 235578
Q ss_pred CEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCC
Q 010005 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKV 124 (520)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gv 124 (520)
|.||-.-|.+.. + .+++.|++.|+
T Consensus 66 d~vi~SPGi~~~--~-------------~~~~~a~~~gi 89 (93)
T d2jfga1 66 DLIVASPGIALA--H-------------PSLSAAADAGI 89 (93)
T ss_dssp SEEEECTTSCTT--S-------------HHHHHHHHTTC
T ss_pred CEEEECCCCCCC--C-------------HHHHHHHHcCC
Confidence 999987775322 2 37778888887
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=96.02 E-value=0.0012 Score=57.56 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=28.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEe
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~ 39 (520)
+++.||.|.|||||+|+.+++.|.+..+.++..+
T Consensus 3 ~~kikVaIlGATGyvG~elirLL~~HP~~ei~~l 36 (183)
T d2cvoa1 3 GEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVM 36 (183)
T ss_dssp SSCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEE
T ss_pred CCccEEEEECcccHHHHHHHHHHHhCCCceEEEE
Confidence 4568999999999999999999999875666653
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.86 E-value=0.003 Score=53.31 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=21.3
Q ss_pred eEEEEcCCChhHHHHHHHHHhcC
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELG 32 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g 32 (520)
||.|.|||||+|+.|++.|.+..
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~ 25 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEEST 25 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCC
T ss_pred EEEEECCCcHHHHHHHHHHHcCC
Confidence 79999999999999999998875
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=95.76 E-value=0.013 Score=52.34 Aligned_cols=72 Identities=11% Similarity=0.047 Sum_probs=49.5
Q ss_pred CCCCeEEEEcC----------------CChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEE
Q 010005 6 AIPRTCVVLNG----------------RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69 (520)
Q Consensus 6 ~~~~~ILVtGa----------------tGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~ 69 (520)
.++|+||||+| ||..|.+|++++..+|+ +|+++ ...... .....+..+.
T Consensus 4 l~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga-~V~li--------~g~~~~------~~p~~~~~~~ 68 (223)
T d1u7za_ 4 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGA-NVTLV--------SGPVSL------PTPPFVKRVD 68 (223)
T ss_dssp TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTC-EEEEE--------ECSCCC------CCCTTEEEEE
T ss_pred cCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCC-chhhh--------hccccc------Ccccccccce
Confidence 45789999987 79999999999999995 88883 222210 0122455544
Q ss_pred ecCCCHH----HHHHHHcCCCEEEEcccC
Q 010005 70 VDVRDIS----QIKKVLEGASTVFYVDAT 94 (520)
Q Consensus 70 ~Dl~d~~----~l~~~l~~~D~Vih~aa~ 94 (520)
. ...+ .+.+.+.++|++|+.||.
T Consensus 69 ~--~t~~~m~~~~~~~~~~~D~~i~aAAv 95 (223)
T d1u7za_ 69 V--MTALEMEAAVNASVQQQNIFIGCAAV 95 (223)
T ss_dssp C--CSHHHHHHHHHHHGGGCSEEEECCBC
T ss_pred e--hhhHHHHHHHHhhhccceeEeeeech
Confidence 3 3333 344555689999999998
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.75 E-value=0.0033 Score=54.00 Aligned_cols=74 Identities=20% Similarity=0.167 Sum_probs=47.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
++.+|||+||+|-+|...++.+...| .+|++.+. ++.+...... -+.+.+ .|..+...-....+++|
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G-~~vi~~~~--------~~~~~~~~~~---lGa~~~-i~~~~~~~~~~~~~g~D 93 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMG-LRVLAAAS--------RPEKLALPLA---LGAEEA-ATYAEVPERAKAWGGLD 93 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTT-CEEEEEES--------SGGGSHHHHH---TTCSEE-EEGGGHHHHHHHTTSEE
T ss_pred CCCEEEEEeccccchhhhhhhhcccc-cccccccc--------cccccccccc---ccccee-eehhhhhhhhhcccccc
Confidence 56799999999999999999999999 48888543 3221111111 122222 25544433333446799
Q ss_pred EEEEccc
Q 010005 87 TVFYVDA 93 (520)
Q Consensus 87 ~Vih~aa 93 (520)
+||++.|
T Consensus 94 ~v~d~~G 100 (171)
T d1iz0a2 94 LVLEVRG 100 (171)
T ss_dssp EEEECSC
T ss_pred ccccccc
Confidence 9999876
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=95.38 E-value=0.0034 Score=53.25 Aligned_cols=73 Identities=19% Similarity=0.253 Sum_probs=51.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
.++++|||+|+ |-+|+.+++.|.+.|..++++ ..|+..+. .+...+ +.. ..+.+++.+.+..
T Consensus 22 l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v--------~nRt~~ka~~l~~~~---~~~-----~~~~~~~~~~l~~ 84 (159)
T d1gpja2 22 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLV--------ANRTYERAVELARDL---GGE-----AVRFDELVDHLAR 84 (159)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEE--------ECSSHHHHHHHHHHH---TCE-----ECCGGGHHHHHHT
T ss_pred cccCeEEEECC-CHHHHHHHHHHHhcCCcEEEE--------EcCcHHHHHHHHHhh---hcc-----cccchhHHHHhcc
Confidence 35789999996 999999999999999657888 45553311 111111 112 2344677888999
Q ss_pred CCEEEEcccCC
Q 010005 85 ASTVFYVDATD 95 (520)
Q Consensus 85 ~D~Vih~aa~~ 95 (520)
+|+||.+.+..
T Consensus 85 ~Divi~atss~ 95 (159)
T d1gpja2 85 SDVVVSATAAP 95 (159)
T ss_dssp CSEEEECCSSS
T ss_pred CCEEEEecCCC
Confidence 99999998753
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.23 E-value=0.041 Score=43.23 Aligned_cols=94 Identities=16% Similarity=0.141 Sum_probs=62.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
.++++|||.| .|-+|..-++.|++.| -+|++++... .. .+.......++++...+..+.+ ++++
T Consensus 10 l~~k~vlVvG-~G~va~~ka~~ll~~g-a~v~v~~~~~--------~~-~~~~~~~~~~i~~~~~~~~~~d-----l~~~ 73 (113)
T d1pjqa1 10 LRDRDCLIVG-GGDVAERKARLLLEAG-ARLTVNALTF--------IP-QFTVWANEGMLTLVEGPFDETL-----LDSC 73 (113)
T ss_dssp CBTCEEEEEC-CSHHHHHHHHHHHHTT-BEEEEEESSC--------CH-HHHHHHTTTSCEEEESSCCGGG-----GTTC
T ss_pred eCCCEEEEEC-CCHHHHHHHHHHHHCC-CeEEEEeccC--------Ch-HHHHHHhcCCceeeccCCCHHH-----hCCC
Confidence 4579999998 8999999999999999 4888854321 11 1112223456778777765433 5678
Q ss_pred CEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEee
Q 010005 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131 (520)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~S 131 (520)
+.|+-+.+ +. +. ...+.+.|++.|+ +|.+.
T Consensus 74 ~lv~~at~------d~----~~----n~~i~~~a~~~~i--lVNv~ 103 (113)
T d1pjqa1 74 WLAIAATD------DD----TV----NQRVSDAAESRRI--FCNVV 103 (113)
T ss_dssp SEEEECCS------CH----HH----HHHHHHHHHHTTC--EEEET
T ss_pred cEEeecCC------CH----HH----HHHHHHHHHHcCC--EEEeC
Confidence 88885542 11 11 2468889999885 56543
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.21 E-value=0.036 Score=46.62 Aligned_cols=104 Identities=16% Similarity=0.210 Sum_probs=61.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccc--cCCCC--CCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQ--LDPSE--SNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~--l~r~~--~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
|++|.+.| .|.+|+.+++.|+++| ++|.+.|+..... +.-.. ......+.. .....+..-+.+.+..+.++.
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g-~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~--~~~diii~~v~~~~~~~~v~~ 76 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAG-YLLNVFDLVQSAVDGLVAAGASAARSARDAV--QGADVVISMLPASQHVEGLYL 76 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTT-CEEEEECSSHHHHHHHHHTTCEECSSHHHHH--TSCSEEEECCSCHHHHHHHHH
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCC-CeEEEEECchhhhhhhhhhhccccchhhhhc--cccCeeeecccchhhHHHHHh
Confidence 47899997 8999999999999999 6999987654210 00000 000000111 123455555556555555543
Q ss_pred C----------CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEE
Q 010005 84 G----------ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129 (520)
Q Consensus 84 ~----------~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~ 129 (520)
. =++||++... + ...+..+.+.+++.|+ +|+-
T Consensus 77 ~~~~~~~~l~~g~iiid~st~-----~--------p~~~~~~~~~~~~~gi-~~~d 118 (162)
T d3cuma2 77 DDDGLLAHIAPGTLVLECSTI-----A--------PTSARKIHAAARERGL-AMLD 118 (162)
T ss_dssp STTCHHHHSCTTCEEEECSCC-----C--------HHHHHHHHHHHHHTTC-EEEE
T ss_pred ccccccccCCCCCEEEECCCC-----C--------HHHHHHHHHHHHHCCC-cEEe
Confidence 2 2567766643 2 2345677888888887 5653
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.19 E-value=0.0043 Score=53.27 Aligned_cols=74 Identities=18% Similarity=0.138 Sum_probs=47.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHH---HHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIK---KVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~---~~l~ 83 (520)
++.+|||+||+|-+|...++.+...| .+|++.+ +++.+..+... -+... ..|.++.+..+ +...
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G-~~vi~~~--------~~~~~~~~~~~---~Ga~~-vi~~~~~~~~~~i~~~t~ 94 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYG-LKILGTA--------GTEEGQKIVLQ---NGAHE-VFNHREVNYIDKIKKYVG 94 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEE--------SSHHHHHHHHH---TTCSE-EEETTSTTHHHHHHHHHC
T ss_pred CCCEEEEEeccccccccccccccccC-ccccccc--------ccccccccccc---cCccc-ccccccccHHHHhhhhhc
Confidence 56799999999999999999999999 5888844 33221111111 12222 23666654333 3332
Q ss_pred --CCCEEEEccc
Q 010005 84 --GASTVFYVDA 93 (520)
Q Consensus 84 --~~D~Vih~aa 93 (520)
++|+||++.+
T Consensus 95 ~~g~d~v~d~~g 106 (174)
T d1yb5a2 95 EKGIDIIIEMLA 106 (174)
T ss_dssp TTCEEEEEESCH
T ss_pred cCCceEEeeccc
Confidence 4899998876
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.19 E-value=0.054 Score=44.04 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=48.9
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCEEE
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTVF 89 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~Vi 89 (520)
||.|.|++|-.|+.+++.+.+....++.+. +++... ... ....++|+||
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~-------~d~~~~----------------------~~~--~~~~~~DvvI 49 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAE-------LDAGDP----------------------LSL--LTDGNTEVVI 49 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEE-------ECTTCC----------------------THH--HHTTTCSEEE
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEE-------EecCCc----------------------hhh--hccccCCEEE
Confidence 799999999999999999888764676551 222110 011 1124689999
Q ss_pred EcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEE
Q 010005 90 YVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (520)
Q Consensus 90 h~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V 128 (520)
.+..+. ++...++.|.+.|+ .+|
T Consensus 50 DFS~p~---------------~~~~~~~~~~~~~~-~~V 72 (135)
T d1yl7a1 50 DFTHPD---------------VVMGNLEFLIDNGI-HAV 72 (135)
T ss_dssp ECCCTT---------------THHHHHHHHHHTTC-EEE
T ss_pred EcccHH---------------HHHHHHHHHHhcCC-CEE
Confidence 997542 23568889999998 444
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=95.16 E-value=0.0078 Score=50.38 Aligned_cols=74 Identities=16% Similarity=0.188 Sum_probs=52.7
Q ss_pred eEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHH-HcCCCEE
Q 010005 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGASTV 88 (520)
Q Consensus 10 ~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~-l~~~D~V 88 (520)
+|+|.| .|-+|+.+++.|.++| ++|+++|..+.... ...+.....++.++.||..|++.+.++ ++.+|+|
T Consensus 5 HiII~G-~g~~g~~l~~~L~~~~-~~v~vId~d~~~~~-------~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~v 75 (153)
T d1id1a_ 5 HFIVCG-HSILAINTILQLNQRG-QNVTVISNLPEDDI-------KQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAI 75 (153)
T ss_dssp CEEEEC-CSHHHHHHHHHHHHTT-CCEEEEECCCHHHH-------HHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEE
T ss_pred EEEEEC-CCHHHHHHHHHHHHcC-CCEEEEeccchhHH-------HHHHHhhcCCcEEEEccCcchHHHHHhccccCCEE
Confidence 688988 4999999999999999 58888665321000 000111234789999999999988766 4679999
Q ss_pred EEcc
Q 010005 89 FYVD 92 (520)
Q Consensus 89 ih~a 92 (520)
|-+.
T Consensus 76 i~~~ 79 (153)
T d1id1a_ 76 LALS 79 (153)
T ss_dssp EECS
T ss_pred EEcc
Confidence 8665
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.14 E-value=0.014 Score=49.47 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=29.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~ 43 (520)
.+.+|+|+| +|-+|...++.+...| .+|+++|...
T Consensus 26 ~g~~vlV~G-~G~vG~~~~~~ak~~G-a~vi~v~~~~ 60 (170)
T d1e3ja2 26 LGTTVLVIG-AGPIGLVSVLAAKAYG-AFVVCTARSP 60 (170)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESCH
T ss_pred CCCEEEEEc-ccccchhhHhhHhhhc-ccccccchHH
Confidence 457899997 7999999999999999 5999966543
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=95.09 E-value=0.0048 Score=53.39 Aligned_cols=75 Identities=16% Similarity=0.064 Sum_probs=47.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCH---HHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI---SQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~---~~l~~~l 82 (520)
.++.+|||+||+|-+|+..++.....| .+|++. .+++++..+.. ..+...+ .|..+. +.+.+..
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~G-a~vi~~--------~~~~~~~~~~~---~~Ga~~v-i~~~~~~~~~~~~~~~ 94 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLKG-CKVVGA--------AGSDEKIAYLK---QIGFDAA-FNYKTVNSLEEALKKA 94 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHTT-CEEEEE--------ESSHHHHHHHH---HTTCSEE-EETTSCSCHHHHHHHH
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHccC-CEEEEe--------CCCHHHHHHHH---hhhhhhh-cccccccHHHHHHHHh
Confidence 356899999999999999999999999 599984 44433211111 1122222 233333 3333443
Q ss_pred c--CCCEEEEccc
Q 010005 83 E--GASTVFYVDA 93 (520)
Q Consensus 83 ~--~~D~Vih~aa 93 (520)
. ++|+||++.+
T Consensus 95 ~~~Gvd~v~D~vG 107 (182)
T d1v3va2 95 SPDGYDCYFDNVG 107 (182)
T ss_dssp CTTCEEEEEESSC
T ss_pred hcCCCceeEEecC
Confidence 3 5999999986
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=95.03 E-value=0.016 Score=44.36 Aligned_cols=93 Identities=15% Similarity=0.081 Sum_probs=59.3
Q ss_pred CCCCCCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHH
Q 010005 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (520)
Q Consensus 1 m~~~~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (520)
|.++..+.++|.+.|-.|--=+.|++.|.++| ++|.+.|...+ +. .+.+...++....++- ++
T Consensus 1 ~~~~~~~~~~ihfiGigG~GMs~LA~~L~~~G-~~VsGSD~~~~------~~----~~~L~~~Gi~v~~g~~--~~---- 63 (96)
T d1p3da1 1 IIPEMRRVQQIHFIGIGGAGMSGIAEILLNEG-YQISGSDIADG------VV----TQRLAQAGAKIYIGHA--EE---- 63 (96)
T ss_dssp CCCCCTTCCEEEEETTTSTTHHHHHHHHHHHT-CEEEEEESCCS------HH----HHHHHHTTCEEEESCC--GG----
T ss_pred CCccchhCCEEEEEEECHHHHHHHHHHHHhCC-CEEEEEeCCCC------hh----hhHHHHCCCeEEECCc--cc----
Confidence 44455567899998866654478899999999 69999886532 11 0111224566655443 22
Q ss_pred HHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCC
Q 010005 81 VLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR 125 (520)
Q Consensus 81 ~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk 125 (520)
.++++|.||.-.|... .++ -+.+|++.|++
T Consensus 64 ~i~~~d~vV~S~AI~~--~np-------------el~~A~~~gip 93 (96)
T d1p3da1 64 HIEGASVVVVSSAIKD--DNP-------------ELVTSKQKRIP 93 (96)
T ss_dssp GGTTCSEEEECTTSCT--TCH-------------HHHHHHHTTCC
T ss_pred cCCCCCEEEECCCcCC--CCH-------------HHHHHHHcCCC
Confidence 2467899999888643 344 24567777763
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.98 E-value=0.027 Score=48.44 Aligned_cols=72 Identities=21% Similarity=0.208 Sum_probs=45.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-------CCCCCCCCCCcEEEEecCCCHHHHHHH
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-------LLPDSLSSGRAEYHQVDVRDISQIKKV 81 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~-------~l~~~~~~~~v~~~~~Dl~d~~~l~~~ 81 (520)
|+|.|.| +|-.|+.++..|.+.|| +|++. .|..++. ....... +......++.-..++.++
T Consensus 1 MkI~ViG-aG~~GtalA~~la~~g~-~V~l~--------~r~~~~~~~~~i~~~~~~~~~--~~~~~~~~i~~~~~~~~~ 68 (180)
T d1txga2 1 MIVSILG-AGAMGSALSVPLVDNGN-EVRIW--------GTEFDTEILKSISAGREHPRL--GVKLNGVEIFWPEQLEKC 68 (180)
T ss_dssp CEEEEES-CCHHHHHHHHHHHHHCC-EEEEE--------CCGGGHHHHHHHHTTCCBTTT--TBCCCSEEEECGGGHHHH
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC-EEEEE--------EecccHHHHHHHhhhhhhhhh--cchhccccccccccHHHH
Confidence 7999998 79999999999999995 99984 3321100 0000000 111111122334567889
Q ss_pred HcCCCEEEEcc
Q 010005 82 LEGASTVFYVD 92 (520)
Q Consensus 82 l~~~D~Vih~a 92 (520)
++++|.||.+-
T Consensus 69 ~~~ad~Ii~av 79 (180)
T d1txga2 69 LENAEVVLLGV 79 (180)
T ss_dssp HTTCSEEEECS
T ss_pred Hhccchhhccc
Confidence 99999998654
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=94.97 E-value=0.015 Score=50.23 Aligned_cols=83 Identities=12% Similarity=0.087 Sum_probs=56.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCC-CCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD-SLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~-~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
++++|+|.|+ |-.|++++..|.+.|..+++++++.... ..|.. .+.+ ....-.......|+.+.+.+.+.+..+
T Consensus 17 ~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~-~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (182)
T d1vi2a1 17 KGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEF-FDKAL---AFAQRVNENTDCVVTVTDLADQQAFAEALASA 91 (182)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTT-HHHHH---HHHHHHHHHSSCEEEEEETTCHHHHHHHHHTC
T ss_pred CCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHH-HHHHH---HHHHHHHhhcCcceEeeecccccchhhhhccc
Confidence 5689999995 7889999999999987678885543210 00000 0000 001123446678999999899999999
Q ss_pred CEEEEcccC
Q 010005 86 STVFYVDAT 94 (520)
Q Consensus 86 D~Vih~aa~ 94 (520)
|.||++...
T Consensus 92 diiIN~Tp~ 100 (182)
T d1vi2a1 92 DILTNGTKV 100 (182)
T ss_dssp SEEEECSST
T ss_pred ceeccccCC
Confidence 999999865
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=94.94 E-value=0.0081 Score=51.59 Aligned_cols=33 Identities=27% Similarity=0.237 Sum_probs=29.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~ 42 (520)
.|||.|+| +|.+|..++..|.++|| +|.++|+.
T Consensus 1 sk~iaIiG-aG~~G~~~A~~l~~~G~-~V~~~~r~ 33 (184)
T d1bg6a2 1 SKTYAVLG-LGNGGHAFAAYLALKGQ-SVLAWDID 33 (184)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCC-EEEEEECC
Confidence 37999999 59999999999999995 99997664
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.55 E-value=0.0096 Score=51.25 Aligned_cols=74 Identities=23% Similarity=0.208 Sum_probs=47.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHH---HHHHHH-
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS---QIKKVL- 82 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~---~l~~~l- 82 (520)
++.+|||+||+|-+|...++.+...| .+|++. .+++++.. .+...+...+ .|..+++ ++.+..
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g-~~vi~~--------~~~~~~~~---~l~~~Ga~~v-i~~~~~~~~~~v~~~t~ 91 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIG-ARIYTT--------AGSDAKRE---MLSRLGVEYV-GDSRSVDFADEILELTD 91 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEE--------ESSHHHHH---HHHTTCCSEE-EETTCSTHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcccccchhhcccc-ccceee--------eccccccc---cccccccccc-ccCCccCHHHHHHHHhC
Confidence 46799999999999999999999999 587773 33322111 1111233332 3555543 334433
Q ss_pred -cCCCEEEEccc
Q 010005 83 -EGASTVFYVDA 93 (520)
Q Consensus 83 -~~~D~Vih~aa 93 (520)
+++|+||++.+
T Consensus 92 ~~g~d~v~d~~g 103 (183)
T d1pqwa_ 92 GYGVDVVLNSLA 103 (183)
T ss_dssp TCCEEEEEECCC
T ss_pred CCCEEEEEeccc
Confidence 35899999886
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=94.45 E-value=0.006 Score=52.46 Aligned_cols=74 Identities=14% Similarity=0.052 Sum_probs=47.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHH---HHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS---QIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~---~l~~~l~ 83 (520)
++.+|||+||+|-+|...++.....| .+|++.|. ++.+.++... -+...+ .|.++++ ++.++-.
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~G-a~Vi~~~~--------s~~k~~~~~~---lGa~~v-i~~~~~d~~~~v~~~t~ 94 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALG-AKLIGTVG--------TAQKAQSALK---AGAWQV-INYREEDLVERLKEITG 94 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHT-CEEEEEES--------SHHHHHHHHH---HTCSEE-EETTTSCHHHHHHHHTT
T ss_pred CCCEEEEEccccccchHHHHHHHHhC-CeEeeccc--------chHHHHHHHh---cCCeEE-EECCCCCHHHHHHHHhC
Confidence 46799999999999999999999999 58999543 3332111111 122222 3666543 3333333
Q ss_pred --CCCEEEEccc
Q 010005 84 --GASTVFYVDA 93 (520)
Q Consensus 84 --~~D~Vih~aa 93 (520)
++|+|+.+.+
T Consensus 95 g~g~d~v~d~~g 106 (179)
T d1qora2 95 GKKVRVVYDSVG 106 (179)
T ss_dssp TCCEEEEEECSC
T ss_pred CCCeEEEEeCcc
Confidence 4799999886
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.41 E-value=0.026 Score=47.73 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=28.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDST 42 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~ 42 (520)
|++|+|.| .|.+|.++++.|.+.|. .+|+++|+.
T Consensus 1 Mk~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~D~~ 35 (171)
T d2g5ca2 1 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDIN 35 (171)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 46899997 79999999999999984 368886654
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=94.37 E-value=0.013 Score=42.92 Aligned_cols=31 Identities=32% Similarity=0.280 Sum_probs=28.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEE
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRV 38 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~ 38 (520)
++++|||+||+|-+|+..++.+...| .+|++
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~G-~~Vi~ 61 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKLG-YQVVA 61 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTT-CCEEE
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHcC-CeEEE
Confidence 56799999999999999999989999 58888
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=94.34 E-value=0.038 Score=46.87 Aligned_cols=31 Identities=13% Similarity=0.065 Sum_probs=25.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEE
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRV 38 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~ 38 (520)
+.+||.|.| +|.+|+..++.|.+....++++
T Consensus 2 ~kirvgiiG-~G~ig~~~~~~l~~~~~~elva 32 (170)
T d1f06a1 2 TNIRVAIVG-YGNLGRSVEKLIAKQPDMDLVG 32 (170)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHTTCSSEEEEE
T ss_pred CcceEEEEC-ChHHHHHHHHHHHhCCCcEEEE
Confidence 457999998 7999999999999875456664
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=94.21 E-value=0.03 Score=48.53 Aligned_cols=35 Identities=23% Similarity=0.212 Sum_probs=29.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~ 42 (520)
+.|+||.|.| +|.-|++++..|.+.|| +|++.+++
T Consensus 5 ~~m~KI~ViG-aG~wGtAlA~~La~~g~-~V~l~~r~ 39 (189)
T d1n1ea2 5 LYLNKAVVFG-SGAFGTALAMVLSKKCR-EVCVWHMN 39 (189)
T ss_dssp CCEEEEEEEC-CSHHHHHHHHHHHTTEE-EEEEECSC
T ss_pred ceeceEEEEC-CCHHHHHHHHHHHHcCC-eEEEEEec
Confidence 3456899998 89999999999999995 99995543
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.04 E-value=0.083 Score=42.55 Aligned_cols=89 Identities=19% Similarity=0.201 Sum_probs=58.4
Q ss_pred CCCeEEEEcCC---ChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHc
Q 010005 7 IPRTCVVLNGR---GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGat---GfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~ 83 (520)
+.++|.|.|++ |..|..+.+.|.+.|.++|+. +.+.... . .+. -..-++.|. =+
T Consensus 7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~p--------VnP~~~~--i------~G~-~~y~sl~dl------p~ 63 (129)
T d2csua1 7 NPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYP--------VNIKEEE--V------QGV-KAYKSVKDI------PD 63 (129)
T ss_dssp SCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEE--------ECSSCSE--E------TTE-ECBSSTTSC------SS
T ss_pred CCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEE--------eccCccc--c------CCe-Eeecchhhc------CC
Confidence 46899999999 899999999988766458988 3333220 0 011 122233332 23
Q ss_pred CCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecc
Q 010005 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (520)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~ 133 (520)
.+|.++-+.. -..+..+++.|.+.|++.++.+|+.
T Consensus 64 ~vDlvvi~vp---------------~~~~~~~~~~~~~~g~~~~vi~s~G 98 (129)
T d2csua1 64 EIDLAIIVVP---------------KRFVKDTLIQCGEKGVKGVVIITAG 98 (129)
T ss_dssp CCSEEEECSC---------------HHHHHHHHHHHHHHTCCEEEECCCS
T ss_pred CCceEEEecC---------------hHHhHHHHHHHHHcCCCEEEEeccc
Confidence 5788875543 2334568899999999888877764
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=93.98 E-value=0.031 Score=42.03 Aligned_cols=85 Identities=12% Similarity=-0.016 Sum_probs=55.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCCEE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D~V 88 (520)
|||-++|-.|-==+.|++.|.++| +.|.+.|+..+. . .+.+...++++..+. +++. ++++|.|
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G-~~VsGSD~~~~~------~----t~~L~~~Gi~i~~gh--~~~~----i~~~d~v 64 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNG-NDVYGSNIEETE------R----TAYLRKLGIPIFVPH--SADN----WYDPDLV 64 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEECSSCCH------H----HHHHHHTTCCEESSC--CTTS----CCCCSEE
T ss_pred cEEEEEeECHHHHHHHHHHHHhCC-CeEEEEeCCCCh------h----HHHHHHCCCeEEeee--cccc----cCCCCEE
Confidence 789999877755567999999999 699998865321 1 112233456555432 2222 3578999
Q ss_pred EEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCC
Q 010005 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR 125 (520)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvk 125 (520)
|...|... .+| -+++|++.|++
T Consensus 65 V~SsAI~~--~np-------------el~~A~~~gIp 86 (89)
T d1j6ua1 65 IKTPAVRD--DNP-------------EIVRARMERVP 86 (89)
T ss_dssp EECTTCCT--TCH-------------HHHHHHHTTCC
T ss_pred EEecCcCC--CCH-------------HHHHHHHcCCC
Confidence 99988742 344 36677888764
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.89 E-value=0.023 Score=47.35 Aligned_cols=31 Identities=23% Similarity=0.129 Sum_probs=27.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
|||.|+| .|.+|+.+++.|.++|+ +|++.|+
T Consensus 1 MkIgiIG-~G~mG~~ia~~l~~~g~-~v~~~~~ 31 (152)
T d1i36a2 1 LRVGFIG-FGEVAQTLASRLRSRGV-EVVTSLE 31 (152)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTC-EEEECCT
T ss_pred CEEEEEc-HHHHHHHHHHHHHHCCC-eEEEEcC
Confidence 6899997 89999999999999994 8888543
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.67 E-value=0.038 Score=47.98 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=31.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~ 43 (520)
++-++|.|.|| |.+|+.++..+...| ++|+++|+..
T Consensus 2 ~~IkkvaViGa-G~mG~~iA~~~a~~G-~~V~l~D~~~ 37 (192)
T d1f0ya2 2 IIVKHVTVIGG-GLMGAGIAQVAAATG-HTVVLVDQTE 37 (192)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSCH
T ss_pred ceeEEEEEECc-CHHHHHHHHHHHhCC-CcEEEEECCh
Confidence 45589999995 999999999999999 5999987754
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=93.62 E-value=0.35 Score=43.15 Aligned_cols=114 Identities=13% Similarity=0.124 Sum_probs=71.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--CCCCCCCC----------CCCCcEEEEecCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--NSLLPDSL----------SSGRAEYHQVDVR 73 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~--~~~l~~~~----------~~~~v~~~~~Dl~ 73 (520)
..+|+|.| .|-+|++++..|...|..+++++|.+. ..++.|..- ........ ..+.+.....+..
T Consensus 30 ~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~~~ 108 (247)
T d1jw9b_ 30 DSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL 108 (247)
T ss_dssp HCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred CCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhhhh
Confidence 46999999 777999999999999987899998654 223444321 00010000 0244445444432
Q ss_pred -CHHHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccccc
Q 010005 74 -DISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (520)
Q Consensus 74 -d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg 137 (520)
+.+.....+.+.|+||.+.. + ......+-++|++.++ .+|+.+....+|
T Consensus 109 ~~~~~~~~~~~~~divid~~d------~--------~~~~~~in~~~~~~~i-p~i~g~~~~~~g 158 (247)
T d1jw9b_ 109 LDDAELAALIAEHDLVLDCTD------N--------VAVRNQLNAGCFAAKV-PLVSGAAIRMEG 158 (247)
T ss_dssp CCHHHHHHHHHTSSEEEECCS------S--------HHHHHHHHHHHHHHTC-CEEEEEEEBTEE
T ss_pred hhhccccccccccceeeeccc------h--------hhhhhhHHHHHHHhCC-Cccccccccccc
Confidence 34556677788999997652 1 2233456678888887 588776665554
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.33 E-value=0.019 Score=48.73 Aligned_cols=75 Identities=9% Similarity=0.014 Sum_probs=46.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
++.+|+|.|+ |-+|...++.+...| .+|+++|..+ .+-.+...+ +...+.-...+.+..++..+++|
T Consensus 27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G-~~vi~~~~~~--------~k~~~a~~l---Ga~~~i~~~~~~~~~~~~~~~~d 93 (168)
T d1piwa2 27 PGKKVGIVGL-GGIGSMGTLISKAMG-AETYVISRSS--------RKREDAMKM---GADHYIATLEEGDWGEKYFDTFD 93 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHT-CEEEEEESSS--------TTHHHHHHH---TCSEEEEGGGTSCHHHHSCSCEE
T ss_pred CCCEEEEECC-CCcchhHHHHhhhcc-ccccccccch--------hHHHHhhcc---CCcEEeeccchHHHHHhhhcccc
Confidence 4679999986 999999999888899 4899865532 211111111 22222211223333445556789
Q ss_pred EEEEcccC
Q 010005 87 TVFYVDAT 94 (520)
Q Consensus 87 ~Vih~aa~ 94 (520)
+|+.+.+.
T Consensus 94 ~vi~~~~~ 101 (168)
T d1piwa2 94 LIVVCASS 101 (168)
T ss_dssp EEEECCSC
T ss_pred eEEEEecC
Confidence 99998765
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.23 E-value=0.017 Score=49.52 Aligned_cols=74 Identities=16% Similarity=0.074 Sum_probs=44.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCH-HHHHHHH--cC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI-SQIKKVL--EG 84 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~-~~l~~~l--~~ 84 (520)
+.+|||+||+|-+|+..++.....| .+|++ ..+++.+..+...+ +...+ .|..+. ++..+.. ++
T Consensus 32 g~~VLI~gaaGGVG~~aiQlak~~G-a~Via--------t~~s~~k~~~~~~l---Ga~~v-i~~~~~~~~~~~~~~~~g 98 (176)
T d1xa0a2 32 RGPVLVTGATGGVGSLAVSMLAKRG-YTVEA--------STGKAAEHDYLRVL---GAKEV-LAREDVMAERIRPLDKQR 98 (176)
T ss_dssp GCCEEESSTTSHHHHHHHHHHHHTT-CCEEE--------EESCTTCHHHHHHT---TCSEE-EECC---------CCSCC
T ss_pred CCEEEEEeccchHHHHHHHHHHHcC-CceEE--------ecCchHHHHHHHhc---cccee-eecchhHHHHHHHhhccC
Confidence 5689999999999999999999999 58888 45554432222222 22221 133222 1222222 25
Q ss_pred CCEEEEcccC
Q 010005 85 ASTVFYVDAT 94 (520)
Q Consensus 85 ~D~Vih~aa~ 94 (520)
+|+||++.+.
T Consensus 99 vD~vid~vgg 108 (176)
T d1xa0a2 99 WAAAVDPVGG 108 (176)
T ss_dssp EEEEEECSTT
T ss_pred cCEEEEcCCc
Confidence 8999999873
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=93.03 E-value=0.022 Score=46.00 Aligned_cols=69 Identities=19% Similarity=0.173 Sum_probs=48.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHH-HcCCCE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAST 87 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~-l~~~D~ 87 (520)
|+|+|.| .|-+|+.+++.|. | +.|.++|..+. . .+.....++.++.||.+|++.+.++ ++.++.
T Consensus 1 kHivI~G-~g~~g~~l~~~L~--~-~~i~vi~~d~~------~-----~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~ 65 (129)
T d2fy8a1 1 RHVVICG-WSESTLECLRELR--G-SEVFVLAEDEN------V-----RKKVLRSGANFVHGDPTRVSDLEKANVRGARA 65 (129)
T ss_dssp CCEEEES-CCHHHHHHHHTSC--G-GGEEEEESCTT------H-----HHHHHHTTCEEEESCTTSHHHHHHTTCTTCSE
T ss_pred CEEEEEC-CCHHHHHHHHHHc--C-CCCEEEEcchH------H-----HHHHHhcCccccccccCCHHHHHHhhhhcCcE
Confidence 5688988 6889999999984 4 35666554321 0 0111235789999999999888765 467888
Q ss_pred EEEcc
Q 010005 88 VFYVD 92 (520)
Q Consensus 88 Vih~a 92 (520)
+|-+.
T Consensus 66 vi~~~ 70 (129)
T d2fy8a1 66 VIVNL 70 (129)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 88544
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=92.99 E-value=0.087 Score=44.70 Aligned_cols=31 Identities=10% Similarity=0.075 Sum_probs=25.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEE
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRV 38 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~ 38 (520)
|.+||.|-| .|-||+.+++.|.+++..+|++
T Consensus 1 M~irIaING-fGRIGR~v~Ral~~~~dieiVa 31 (172)
T d2czca2 1 MKVKVGVNG-YGTIGKRVAYAVTKQDDMELIG 31 (172)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHHTCTTEEEEE
T ss_pred CcEEEEEEC-CCHHHHHHHHHHHhCCCceEEE
Confidence 357999998 7999999999999876456554
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=92.69 E-value=0.03 Score=47.40 Aligned_cols=75 Identities=15% Similarity=0.133 Sum_probs=49.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
.++.+|+|.|+ |-+|...++.+...|. +++++|... .+..+...+ +... ..|..+.+......+++
T Consensus 29 ~~G~~VlI~Ga-G~vG~~a~qlak~~Ga-~~i~~~~~~--------~~~~~a~~l---Gad~-~i~~~~~~~~~~~~~~~ 94 (168)
T d1uufa2 29 GPGKKVGVVGI-GGLGHMGIKLAHAMGA-HVVAFTTSE--------AKREAAKAL---GADE-VVNSRNADEMAAHLKSF 94 (168)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESSG--------GGHHHHHHH---TCSE-EEETTCHHHHHTTTTCE
T ss_pred CCCCEEEEecc-chHHHHHHHHhhcccc-cchhhccch--------hHHHHHhcc---CCcE-EEECchhhHHHHhcCCC
Confidence 34679999985 8899999999999995 777755432 211111111 2222 24667776666666789
Q ss_pred CEEEEcccC
Q 010005 86 STVFYVDAT 94 (520)
Q Consensus 86 D~Vih~aa~ 94 (520)
|+||.+.+.
T Consensus 95 D~vid~~g~ 103 (168)
T d1uufa2 95 DFILNTVAA 103 (168)
T ss_dssp EEEEECCSS
T ss_pred ceeeeeeec
Confidence 999999874
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.28 E-value=0.093 Score=44.21 Aligned_cols=76 Identities=17% Similarity=0.190 Sum_probs=48.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCc-EEEEecCCCHHHHHHHHc--
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRA-EYHQVDVRDISQIKKVLE-- 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v-~~~~~Dl~d~~~l~~~l~-- 83 (520)
++.+|+|.|+ |-+|...++.+...|..+|++.|+... +-.+.+.+ +. ..+..+-.+..+..+.++
T Consensus 26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~--------rl~~a~~~---Ga~~~~~~~~~~~~~~~~~~~~~ 93 (171)
T d1pl8a2 26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSAT--------RLSKAKEI---GADLVLQISKESPQEIARKVEGQ 93 (171)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHH--------HHHHHHHT---TCSEEEECSSCCHHHHHHHHHHH
T ss_pred CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHH--------HHHHHHHh---CCccccccccccccccccccccc
Confidence 4568999985 999999999999999557999665432 11111111 22 333444445554444442
Q ss_pred ---CCCEEEEcccC
Q 010005 84 ---GASTVFYVDAT 94 (520)
Q Consensus 84 ---~~D~Vih~aa~ 94 (520)
++|+||.+.+.
T Consensus 94 ~g~g~Dvvid~~G~ 107 (171)
T d1pl8a2 94 LGCKPEVTIECTGA 107 (171)
T ss_dssp HTSCCSEEEECSCC
T ss_pred CCCCceEEEeccCC
Confidence 68999999873
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=92.20 E-value=0.065 Score=44.86 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=28.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~ 42 (520)
|||-|.| .|.+|+.+++.|+++| ++|++.|+.
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G-~~V~~~d~~ 32 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAG-YSLVVSDRN 32 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTT-CEEEEECSC
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCC-CeEEEEeCC
Confidence 6899997 8999999999999999 599996654
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.18 E-value=0.036 Score=46.87 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=30.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~ 42 (520)
.+.+|+|+|++|-+|...++.+...|..+|++.|..
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~ 62 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR 62 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccc
Confidence 457899999999999999999999885578885543
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.93 E-value=0.14 Score=49.94 Aligned_cols=82 Identities=12% Similarity=0.054 Sum_probs=52.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--CCCCCC------------CCCCCCcEEEEec
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--NSLLPD------------SLSSGRAEYHQVD 71 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~--~~~l~r~~~--~~~l~~------------~~~~~~v~~~~~D 71 (520)
..||||.|+. -+|+++++.|...|..+++++|.+. ..++.|+-- ...... ....-++..+..+
T Consensus 37 ~~kVlvvG~G-glG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 115 (426)
T d1yovb1 37 TCKVLVIGAG-GLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNK 115 (426)
T ss_dssp HCCEEEECSS-TTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECSC
T ss_pred cCeEEEECCC-HHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeecc
Confidence 4689999964 5999999999999976899998865 112333210 000000 0112345566666
Q ss_pred CCCHHHHHHHHcCCCEEEEcc
Q 010005 72 VRDISQIKKVLEGASTVFYVD 92 (520)
Q Consensus 72 l~d~~~l~~~l~~~D~Vih~a 92 (520)
+.+.. .+.++++|+||.+.
T Consensus 116 i~~~~--~~~~~~~DlVi~~~ 134 (426)
T d1yovb1 116 IQDFN--DTFYRQFHIIVCGL 134 (426)
T ss_dssp GGGBC--HHHHTTCSEEEECC
T ss_pred ccchH--HHHHHhcchheecc
Confidence 65543 46788999999664
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.90 E-value=0.08 Score=45.18 Aligned_cols=31 Identities=10% Similarity=0.074 Sum_probs=26.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEe
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~ 39 (520)
|-||.|-| .|.||+.+++.|.+++..+|+++
T Consensus 1 MIKVaING-fGRIGR~v~Ral~~~~dievVaI 31 (178)
T d1b7go1 1 MVNVAVNG-YGTIGKRVADAIIKQPDMKLVGV 31 (178)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEE
T ss_pred CeEEEEEC-CCHHHHHHHHHHHhCCCCEEEEE
Confidence 35899998 89999999999999875576664
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.83 E-value=0.17 Score=43.15 Aligned_cols=63 Identities=21% Similarity=0.163 Sum_probs=44.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
..+++|.|.| .|-||+.+++.|...| .+|.++|+. +..... .-.++++++++.+
T Consensus 40 l~gk~vgIiG-~G~IG~~va~~l~~~g-~~v~~~d~~--------~~~~~~----------------~~~~~l~ell~~s 93 (181)
T d1qp8a1 40 IQGEKVAVLG-LGEIGTRVGKILAALG-AQVRGFSRT--------PKEGPW----------------RFTNSLEEALREA 93 (181)
T ss_dssp CTTCEEEEES-CSTHHHHHHHHHHHTT-CEEEEECSS--------CCCSSS----------------CCBSCSHHHHTTC
T ss_pred ccCceEEEec-cccccccceeeeeccc-ccccccccc--------ccccce----------------eeeechhhhhhcc
Confidence 4578999998 8999999999999999 599996543 221100 0012367889999
Q ss_pred CEEEEcccC
Q 010005 86 STVFYVDAT 94 (520)
Q Consensus 86 D~Vih~aa~ 94 (520)
|+|+-+...
T Consensus 94 Div~~~~pl 102 (181)
T d1qp8a1 94 RAAVCALPL 102 (181)
T ss_dssp SEEEECCCC
T ss_pred chhhccccc
Confidence 988866543
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=91.32 E-value=0.086 Score=44.77 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=29.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~ 43 (520)
.+|-+.| .|.+|+.+++.|++.| ++|++.|+..
T Consensus 3 ~nIg~IG-lG~MG~~mA~~L~~~G-~~V~v~dr~~ 35 (176)
T d2pgda2 3 ADIALIG-LAVMGQNLILNMNDHG-FVVCAFNRTV 35 (176)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTT-CCEEEECSST
T ss_pred CcEEEEe-EhHHHHHHHHHHHHCC-CeEEEEcCCH
Confidence 5789998 8999999999999999 5999977654
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=91.28 E-value=0.078 Score=45.22 Aligned_cols=36 Identities=25% Similarity=0.183 Sum_probs=29.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~ 43 (520)
++.+|||+|+ |-+|...++.+...|..+|+++|..+
T Consensus 28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~ 63 (182)
T d1vj0a2 28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSP 63 (182)
T ss_dssp BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred CCCEEEEECC-Cccchhheeccccccccccccccccc
Confidence 4679999986 89999999999999954799966543
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=91.22 E-value=0.079 Score=45.02 Aligned_cols=33 Identities=30% Similarity=0.361 Sum_probs=29.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~ 43 (520)
|||-|+| .|..|..+++.|++.| ++|.+.|+..
T Consensus 2 MkIGvIG-lG~MG~~ma~~L~~~G-~~V~~~dr~~ 34 (178)
T d1pgja2 2 MDVGVVG-LGVMGANLALNIAEKG-FKVAVFNRTY 34 (178)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTT-CCEEEECSSH
T ss_pred CEEEEEe-ehHHHHHHHHHHHHCC-CeEEEEECCH
Confidence 6899997 9999999999999999 5999977643
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.05 E-value=0.46 Score=39.89 Aligned_cols=80 Identities=24% Similarity=0.269 Sum_probs=53.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecC--CCHHHHHHHH
Q 010005 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV--RDISQIKKVL 82 (520)
Q Consensus 5 ~~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl--~d~~~l~~~l 82 (520)
+-++|+|+|.|-+.-+|+-++..|+++| ..|+..++.......+.... .. ......|+ ..++.+.+..
T Consensus 26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~g-aTVt~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~~~~~~lk~~~ 95 (171)
T d1edza1 26 RLYGKKCIVINRSEIVGRPLAALLANDG-ATVYSVDVNNIQKFTRGESL-----KL----NKHHVEDLGEYSEDLLKKCS 95 (171)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTS-CEEEEECSSEEEEEESCCCS-----SC----CCCEEEEEEECCHHHHHHHH
T ss_pred CCCCCEEEEECCccccHHHHHHHHHHCC-CEEEEeccccccccccccce-----ee----eeeccccccccchhHHhhcc
Confidence 4467999999999999999999999999 59998665432111222110 00 01122222 3456688888
Q ss_pred cCCCEEEEcccC
Q 010005 83 EGASTVFYVDAT 94 (520)
Q Consensus 83 ~~~D~Vih~aa~ 94 (520)
..+|+||...|.
T Consensus 96 ~~aDIvIsavG~ 107 (171)
T d1edza1 96 LDSDVVITGVPS 107 (171)
T ss_dssp HHCSEEEECCCC
T ss_pred ccCCEEEEccCC
Confidence 889999988876
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=90.95 E-value=0.14 Score=45.29 Aligned_cols=33 Identities=30% Similarity=0.389 Sum_probs=29.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~ 42 (520)
.+||+|.| +|..|-..+..|.++|+ +|+++|..
T Consensus 6 ~~kVvVIG-aGiaGl~~A~~L~~~G~-~V~vier~ 38 (268)
T d1c0pa1 6 QKRVVVLG-SGVIGLSSALILARKGY-SVHILARD 38 (268)
T ss_dssp SCEEEEEC-CSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred CCcEEEEC-ccHHHHHHHHHHHHCCC-CEEEEeCC
Confidence 47899998 89999999999999995 99997764
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=90.95 E-value=0.17 Score=40.04 Aligned_cols=33 Identities=15% Similarity=0.305 Sum_probs=28.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~ 42 (520)
.++|+|.| +|++|-.++..|.++| .+|++++..
T Consensus 30 ~~~vvIIG-gG~iG~E~A~~l~~~g-~~Vtli~~~ 62 (121)
T d1d7ya2 30 QSRLLIVG-GGVIGLELAATARTAG-VHVSLVETQ 62 (121)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESS
T ss_pred CCeEEEEC-cchhHHHHHHHhhccc-ceEEEEeec
Confidence 57999987 8999999999999999 599996543
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.66 E-value=0.19 Score=39.29 Aligned_cols=35 Identities=23% Similarity=0.523 Sum_probs=29.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~ 42 (520)
..+++++|.| +|++|-.++..|.+.| .+|+++++.
T Consensus 20 ~~p~~v~IiG-gG~ig~E~A~~l~~~G-~~Vtlve~~ 54 (117)
T d1ebda2 20 EVPKSLVVIG-GGYIGIELGTAYANFG-TKVTILEGA 54 (117)
T ss_dssp SCCSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESS
T ss_pred hcCCeEEEEC-CCccceeeeeeecccc-cEEEEEEec
Confidence 3458999998 8999999999999999 599995443
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=90.50 E-value=0.097 Score=44.18 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=27.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
.++.+|+|.|+ |-+|...++.+...|...|++.|.
T Consensus 27 ~~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~ 61 (176)
T d2fzwa2 27 EPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDI 61 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECS
T ss_pred CCCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcc
Confidence 35678999997 568999999999999657888443
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=90.49 E-value=0.11 Score=37.66 Aligned_cols=33 Identities=27% Similarity=0.233 Sum_probs=29.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~ 42 (520)
+|+|.|.| +|.+|+-++.+-.+.| .+|+++|..
T Consensus 1 ~k~vgIlG-~GQLgrMl~~Aa~~LG-~~v~vldp~ 33 (78)
T d3etja2 1 MKQVCVLG-NGQLGRMLRQAGEPLG-IAVWPVGLD 33 (78)
T ss_dssp CEEEEEEB-CSHHHHHHHHHHGGGT-EEEEEECTT
T ss_pred CCEEEEEc-CCHHHHHHHHHHHHcC-CEEEEEcCC
Confidence 47899998 8999999999999999 699996643
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=90.38 E-value=0.12 Score=44.44 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=30.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~ 43 (520)
+-++|.|.|| |.+|+.++..++..| ++|+++|+..
T Consensus 3 ~I~~vaViGa-G~mG~~iA~~~a~~G-~~V~l~D~~~ 37 (186)
T d1wdka3 3 DVKQAAVLGA-GIMGGGIAYQSASKG-TPILMKDINE 37 (186)
T ss_dssp CCSSEEEECC-HHHHHHHHHHHHHTT-CCEEEECSSH
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCC-CeEEEEECCH
Confidence 3578999995 999999999999999 5999988754
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=90.38 E-value=0.13 Score=43.50 Aligned_cols=36 Identities=25% Similarity=0.311 Sum_probs=29.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~ 42 (520)
.++.+|+|+| .|-||...++.+...|...|++.|..
T Consensus 27 ~~G~~VlV~G-~G~iGl~a~~~ak~~Ga~~Vi~~d~~ 62 (174)
T d1e3ia2 27 TPGSTCAVFG-LGCVGLSAIIGCKIAGASRIIAIDIN 62 (174)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CCCCEEEEEC-CChHHHHHHHHHHHhCCceeeeeccc
Confidence 3467999997 69999999999999996578885554
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.37 E-value=0.13 Score=44.30 Aligned_cols=32 Identities=31% Similarity=0.337 Sum_probs=27.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~ 43 (520)
|||.|.| .||+|..++..| ++| ++|+++|++.
T Consensus 1 MkI~ViG-lG~vGl~~a~~~-a~g-~~V~g~Din~ 32 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLL-SLQ-NEVTIVDILP 32 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHH-TTT-SEEEEECSCH
T ss_pred CEEEEEC-CChhHHHHHHHH-HCC-CcEEEEECCH
Confidence 7899997 999999998755 679 5999999876
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=90.34 E-value=0.048 Score=46.46 Aligned_cols=76 Identities=16% Similarity=0.086 Sum_probs=47.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCC---HHHHHHHH
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD---ISQIKKVL 82 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d---~~~l~~~l 82 (520)
.++.+|+|.|+ |-+|...++.+...|..+|+++|..+ .+..+.+.+ +... ..|.++ .+.+.+..
T Consensus 26 ~~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~--------~r~~~a~~l---Ga~~-~i~~~~~~~~~~v~~~t 92 (174)
T d1jqba2 26 EMGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRP--------ICVEAAKFY---GATD-ILNYKNGHIEDQVMKLT 92 (174)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCH--------HHHHHHHHH---TCSE-EECGGGSCHHHHHHHHT
T ss_pred CCCCEEEEEcC-Ccchhhhhhhhhcccccccccccchh--------hhHHHHHhh---Cccc-cccccchhHHHHHHHHh
Confidence 35678999975 99999999999999965799966543 211111111 1111 223333 23444544
Q ss_pred c--CCCEEEEcccC
Q 010005 83 E--GASTVFYVDAT 94 (520)
Q Consensus 83 ~--~~D~Vih~aa~ 94 (520)
. ++|+||.+.+.
T Consensus 93 ~g~G~D~vid~~g~ 106 (174)
T d1jqba2 93 NGKGVDRVIMAGGG 106 (174)
T ss_dssp TTSCEEEEEECSSC
T ss_pred hccCcceEEEccCC
Confidence 3 58999999874
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=90.27 E-value=0.059 Score=45.75 Aligned_cols=35 Identities=26% Similarity=0.268 Sum_probs=28.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
.++.+|+|.|+ |-+|...++.+...|...|++.|.
T Consensus 27 ~~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~ 61 (174)
T d1f8fa2 27 TPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDI 61 (174)
T ss_dssp CTTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEES
T ss_pred CCCCEEEEeCC-CHHHhhhhhcccccccceeeeecc
Confidence 34678999986 999999999998888656777554
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=90.07 E-value=0.23 Score=39.23 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~ 42 (520)
+.++|+|.| +|++|..++..|.++| .+|++++..
T Consensus 29 ~~k~vvViG-gG~iG~E~A~~l~~~g-~~Vtlie~~ 62 (123)
T d1nhpa2 29 EVNNVVVIG-SGYIGIEAAEAFAKAG-KKVTVIDIL 62 (123)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESS
T ss_pred CCCEEEEEC-ChHHHHHHHHHhhccc-eEEEEEEec
Confidence 467999997 8999999999999999 599996543
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=90.00 E-value=0.26 Score=39.22 Aligned_cols=96 Identities=7% Similarity=0.044 Sum_probs=55.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC-CC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-AS 86 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~-~D 86 (520)
..+|+|.| +|.+|+.+++.+.....++++++ ++-++.+ ..... .++..+. .+.+.+..++ ++
T Consensus 3 ~~~v~I~G-aG~~G~~l~~~l~~~~~~~iv~f-------iDdd~~k--~G~~I--~Gi~V~~-----~~~l~~~~~~~i~ 65 (126)
T d2dt5a2 3 KWGLCIVG-MGRLGSALADYPGFGESFELRGF-------FDVDPEK--VGRPV--RGGVIEH-----VDLLPQRVPGRIE 65 (126)
T ss_dssp CEEEEEEC-CSHHHHHHHHCSCCCSSEEEEEE-------EESCTTT--TTCEE--TTEEEEE-----GGGHHHHSTTTCC
T ss_pred CceEEEEc-CCHHHHHHHHhHhhcCCcEEEEE-------EeCchHh--cCCEE--CCEEEec-----HHHHHHHHhhccc
Confidence 45899998 89999999998765544676652 2222221 11111 2455543 2345555543 55
Q ss_pred EEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeecccc
Q 010005 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135 (520)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~v 135 (520)
.++-+.. -...+.+++.|.++|++.+.-++....
T Consensus 66 iai~~i~---------------~~~~~~I~d~l~~~gIk~I~~f~~~~l 99 (126)
T d2dt5a2 66 IALLTVP---------------REAAQKAADLLVAAGIKGILNFAPVVL 99 (126)
T ss_dssp EEEECSC---------------HHHHHHHHHHHHHHTCCEEEECSSSCC
T ss_pred EEEEeCC---------------HHHHHHHHHHHHHcCCCEEeecCceee
Confidence 5443321 123356888899999987776655443
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=89.92 E-value=0.15 Score=42.98 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=28.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~ 42 (520)
.++.+|+|.|+ |-+|...+..+...|..+|++.|+.
T Consensus 27 k~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~ 62 (176)
T d2jhfa2 27 TQGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDIN 62 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CCCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCc
Confidence 34678999998 5589999999999886688885543
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=89.74 E-value=0.18 Score=41.45 Aligned_cols=33 Identities=12% Similarity=0.181 Sum_probs=28.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~ 42 (520)
|||.+.| +|-+|+++++.|++.|.++|.+.|+.
T Consensus 1 MkI~fIG-~G~MG~ai~~~l~~~~~~~i~v~~r~ 33 (152)
T d1yqga2 1 MNVYFLG-GGNMAAAVAGGLVKQGGYRIYIANRG 33 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHCSCEEEEECSS
T ss_pred CEEEEEc-CcHHHHHHHHHHHHCCCCcEEEEeCC
Confidence 6899998 59999999999999885689995443
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=89.67 E-value=0.063 Score=45.16 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=54.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~D 86 (520)
+.-+|+|.| .|-.|..-++.....| -+|+++|.+.. +.. .+...+ ...+ ..-..+.+.+.+.++++|
T Consensus 31 ~pa~V~ViG-aGvaG~~A~~~A~~lG-A~V~~~D~~~~----~l~---~l~~~~-~~~~---~~~~~~~~~l~~~~~~aD 97 (168)
T d1pjca1 31 KPGKVVILG-GGVVGTEAAKMAVGLG-AQVQIFDINVE----RLS---YLETLF-GSRV---ELLYSNSAEIETAVAEAD 97 (168)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESCHH----HHH---HHHHHH-GGGS---EEEECCHHHHHHHHHTCS
T ss_pred CCcEEEEEC-CChHHHHHHHHHhhCC-CEEEEEeCcHH----HHH---HHHHhh-cccc---eeehhhhhhHHHhhccCc
Confidence 357999998 8999999999999999 59999887642 111 111111 1122 233467788999999999
Q ss_pred EEEEcccCC
Q 010005 87 TVFYVDATD 95 (520)
Q Consensus 87 ~Vih~aa~~ 95 (520)
+||-.+-.+
T Consensus 98 ivI~aalip 106 (168)
T d1pjca1 98 LLIGAVLVP 106 (168)
T ss_dssp EEEECCCCT
T ss_pred EEEEeeecC
Confidence 999988763
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=89.42 E-value=0.34 Score=40.46 Aligned_cols=56 Identities=23% Similarity=0.403 Sum_probs=44.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
..+++|+|.|.+..+|+-++..|.++| .+|+..+.. . ..+.+..+.+
T Consensus 35 l~GK~v~VIGrS~~VG~Pla~lL~~~g-atVt~~h~~--------t------------------------~~l~~~~~~A 81 (166)
T d1b0aa1 35 TFGLNAVVIGASNIVGRPMSMELLLAG-CTTTVTHRF--------T------------------------KNLRHHVENA 81 (166)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHTTT-CEEEEECSS--------C------------------------SCHHHHHHHC
T ss_pred cccceEEEEeccccccHHHHHHHHHhh-ccccccccc--------c------------------------chhHHHHhhh
Confidence 357999999999999999999999999 488884321 1 1234556779
Q ss_pred CEEEEcccC
Q 010005 86 STVFYVDAT 94 (520)
Q Consensus 86 D~Vih~aa~ 94 (520)
|+||..+|.
T Consensus 82 DivI~a~G~ 90 (166)
T d1b0aa1 82 DLLIVAVGK 90 (166)
T ss_dssp SEEEECSCC
T ss_pred hHhhhhccC
Confidence 999999987
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.33 E-value=0.27 Score=38.81 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=29.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
.+++++|.| +|+||-.++..|.+.| .+|++++.
T Consensus 22 ~p~~~vIiG-~G~ig~E~A~~l~~lG-~~Vtii~~ 54 (122)
T d1v59a2 22 IPKRLTIIG-GGIIGLEMGSVYSRLG-SKVTVVEF 54 (122)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECS
T ss_pred CCCeEEEEC-CCchHHHHHHHHHhhC-cceeEEEe
Confidence 468999998 8999999999999999 59999544
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.19 E-value=0.045 Score=47.15 Aligned_cols=31 Identities=26% Similarity=0.022 Sum_probs=26.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEE
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRV 38 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~ 38 (520)
..+|||+||+|-+|+..++.....|...|++
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~ 61 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVG 61 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEE
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceec
Confidence 3689999999999999999998899545655
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.08 E-value=0.23 Score=49.91 Aligned_cols=115 Identities=11% Similarity=0.078 Sum_probs=68.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcc--cccCCC-----CCCC---------CCCCCCCCCCcEEEEec
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS--LQLDPS-----ESNS---------LLPDSLSSGRAEYHQVD 71 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~--~~l~r~-----~~~~---------~l~~~~~~~~v~~~~~D 71 (520)
..+|+|.|+ |-+|+++++.|...|..+++++|.+.- .++.|. .+-+ .+.+....-.++.+..+
T Consensus 25 ~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~~~ 103 (529)
T d1yova1 25 SAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEES 103 (529)
T ss_dssp HCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEESSC
T ss_pred CCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEcCC
Confidence 468999995 679999999999999778999887540 011111 1100 01111111123334333
Q ss_pred CCCH-HHHHHHHcCCCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEEeeccccccc
Q 010005 72 VRDI-SQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFD 138 (520)
Q Consensus 72 l~d~-~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~~SS~~vyg~ 138 (520)
..+. +...+.+.++|+||.+.. |......+-++|++.++ .||+++|.+.||.
T Consensus 104 ~~~~~~~~~~~~~~~dvVv~~~~--------------~~~~~~~l~~~c~~~~i-p~i~~~~~G~~G~ 156 (529)
T d1yova1 104 PENLLDNDPSFFCRFTVVVATQL--------------PESTSLRLADVLWNSQI-PLLICRTYGLVGY 156 (529)
T ss_dssp HHHHHHSCGGGGGGCSEEEEESC--------------CHHHHHHHHHHHHHHTC-CEEEEEEETTEEE
T ss_pred chhhhhhHHHHhcCCCEEEECCC--------------CHHHHHHHHHHHHHcCC-CEEEEeccCCEEE
Confidence 3221 111244667899995531 23334567889999987 6999999998873
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=88.99 E-value=0.42 Score=39.88 Aligned_cols=32 Identities=13% Similarity=0.154 Sum_probs=27.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEe
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~ 39 (520)
++++|+|.| +|-.|++++..|.+.|..+|.++
T Consensus 16 ~~~~vlIlG-aGGaarai~~aL~~~g~~~I~I~ 47 (167)
T d1npya1 16 KNAKVIVHG-SGGMAKAVVAAFKNSGFEKLKIY 47 (167)
T ss_dssp TTSCEEEEC-SSTTHHHHHHHHHHTTCCCEEEE
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEe
Confidence 468999998 58899999999999996578883
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=88.88 E-value=0.29 Score=38.32 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=28.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
.++|+|.| .|++|-.++..|.+.| .+|+++++
T Consensus 22 p~~v~IiG-gG~iG~E~A~~l~~~g-~~Vtlv~~ 53 (117)
T d1onfa2 22 SKKIGIVG-SGYIAVELINVIKRLG-IDSYIFAR 53 (117)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHTTT-CEEEEECS
T ss_pred CCEEEEEC-CchHHHHHHHHHHhcc-ccceeeeh
Confidence 57999998 8999999999999999 59999544
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=88.61 E-value=0.3 Score=37.96 Aligned_cols=34 Identities=32% Similarity=0.602 Sum_probs=29.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
..+++++|.| +|++|-.++..|.+.| .+|+++++
T Consensus 19 ~~p~~vvIiG-gG~~G~E~A~~l~~~g-~~Vtlve~ 52 (115)
T d1lvla2 19 ALPQHLVVVG-GGYIGLELGIAYRKLG-AQVSVVEA 52 (115)
T ss_dssp SCCSEEEEEC-CSHHHHHHHHHHHHHT-CEEEEECS
T ss_pred cCCCeEEEEC-CCHHHHHHHHHHhhcc-cceEEEee
Confidence 3468999987 8999999999999999 59999544
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=88.58 E-value=0.33 Score=37.82 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
.+++|+|.| +|++|-.++..|.+.|+ +|+++++
T Consensus 20 ~p~~vvIiG-gG~ig~E~A~~l~~~G~-~Vtlve~ 52 (116)
T d1gesa2 20 LPERVAVVG-AGYIGVELGGVINGLGA-KTHLFEM 52 (116)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred CCCEEEEEC-CChhhHHHHHHhhcccc-EEEEEee
Confidence 357999998 89999999999999995 9999544
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=88.45 E-value=0.28 Score=38.49 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=29.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
..+++++|.| +|+||-.++..|.+.| .+|+++..
T Consensus 20 ~~p~~i~IiG-~G~ig~E~A~~l~~~G-~~Vtiv~~ 53 (119)
T d3lada2 20 NVPGKLGVIG-AGVIGLELGSVWARLG-AEVTVLEA 53 (119)
T ss_dssp SCCSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEES
T ss_pred cCCCeEEEEC-CChHHHHHHHHHHHcC-CceEEEEe
Confidence 3568999998 8999999999999999 59999543
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=88.45 E-value=0.34 Score=38.85 Aligned_cols=34 Identities=18% Similarity=0.348 Sum_probs=29.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~ 42 (520)
..++|+|.| +|++|-.++..|.+.| .+|++++..
T Consensus 34 ~~k~v~VIG-gG~iG~E~A~~l~~~g-~~Vtvie~~ 67 (133)
T d1q1ra2 34 ADNRLVVIG-GGYIGLEVAATAIKAN-MHVTLLDTA 67 (133)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSS
T ss_pred cCCEEEEEC-CchHHHHHHHHHHhhC-cceeeeeec
Confidence 357999998 8999999999999999 599995543
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.41 E-value=0.71 Score=37.25 Aligned_cols=83 Identities=11% Similarity=0.006 Sum_probs=53.4
Q ss_pred CCeEEEEcCC---ChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcC
Q 010005 8 PRTCVVLNGR---GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (520)
Q Consensus 8 ~~~ILVtGat---GfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~ 84 (520)
.++|.|.|++ +-.|..+++.|.+.| ++|+.+ .+... .. .+.. ..-++ .++-+.
T Consensus 19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g-~~v~pV--------nP~~~--~i------~G~~-~~~sl------~dlp~~ 74 (139)
T d2d59a1 19 YKKIALVGASPKPERDANIVMKYLLEHG-YDVYPV--------NPKYE--EV------LGRK-CYPSV------LDIPDK 74 (139)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEE--------CTTCS--EE------TTEE-CBSSG------GGCSSC
T ss_pred CCeEEEEeecCCCCCchHHHHHHHHHCC-CEEEEE--------CCccc--cc------CCCc-ccccc------cccCcc
Confidence 5789999998 789999999999999 599883 33321 00 0111 11222 222235
Q ss_pred CCEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEE
Q 010005 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129 (520)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~ 129 (520)
+|.|+-+.. ......+++.|.+.|++.+++
T Consensus 75 iD~v~i~vp---------------~~~~~~~~~e~~~~g~k~v~~ 104 (139)
T d2d59a1 75 IEVVDLFVK---------------PKLTMEYVEQAIKKGAKVVWF 104 (139)
T ss_dssp CSEEEECSC---------------HHHHHHHHHHHHHHTCSEEEE
T ss_pred ceEEEEEeC---------------HHHHHHHHHHHHHhCCCEEEE
Confidence 788775542 334456888888889876655
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.38 E-value=0.64 Score=38.89 Aligned_cols=56 Identities=16% Similarity=0.171 Sum_probs=44.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
-.+++|+|.|.+..+|+-++..|.++| ..|+..+.. . ..+.+..+++
T Consensus 37 l~Gk~vvVIGrS~iVGrPLa~lL~~~g-atVt~~~~~--------t------------------------~~l~~~~~~a 83 (170)
T d1a4ia1 37 IAGRHAVVVGRSKIVGAPMHDLLLWNN-ATVTTCHSK--------T------------------------AHLDEEVNKG 83 (170)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTT-CEEEEECTT--------C------------------------SSHHHHHTTC
T ss_pred cccceEEEEecCCccchHHHHHHHhcc-CceEEEecc--------c------------------------ccHHHHHhhc
Confidence 357999999999999999999999999 588884331 1 1234566788
Q ss_pred CEEEEcccC
Q 010005 86 STVFYVDAT 94 (520)
Q Consensus 86 D~Vih~aa~ 94 (520)
|+||..+|.
T Consensus 84 Divi~a~G~ 92 (170)
T d1a4ia1 84 DILVVATGQ 92 (170)
T ss_dssp SEEEECCCC
T ss_pred cchhhcccc
Confidence 999988876
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=88.13 E-value=0.94 Score=35.19 Aligned_cols=82 Identities=15% Similarity=0.225 Sum_probs=52.2
Q ss_pred CeEEEEcCC---ChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHHHHHHHcCC
Q 010005 9 RTCVVLNGR---GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (520)
Q Consensus 9 ~~ILVtGat---GfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~l~~~l~~~ 85 (520)
|+|.|.|++ |-.|..+++.|++.| |+|+. +.+... .. .+...+ -++ .++=+.+
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g-~~V~p--------VnP~~~--~i------~G~~~y-~sl------~~lp~~~ 57 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKG-FEVLP--------VNPNYD--EI------EGLKCY-RSV------RELPKDV 57 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEE--------ECTTCS--EE------TTEECB-SSG------GGSCTTC
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCC-CEEEE--------Eccccc--cc------cCcccc-ccc------hhccccc
Confidence 689999988 789999999999999 68888 333322 00 011111 122 2222357
Q ss_pred CEEEEcccCCCCCcchhhHHhhhHHHHHHHHHHHHHCCCCEEEE
Q 010005 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129 (520)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~ 129 (520)
|.++-+.. -..+..+++.|.+.|++.+++
T Consensus 58 D~vvi~vp---------------~~~~~~~l~~~~~~g~k~v~~ 86 (116)
T d1y81a1 58 DVIVFVVP---------------PKVGLQVAKEAVEAGFKKLWF 86 (116)
T ss_dssp CEEEECSC---------------HHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeC---------------HHHHHHHHHHHHhcCCceEEe
Confidence 88875542 233456788888999976643
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=88.07 E-value=0.35 Score=41.34 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=29.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
-.+++|.|.| .|.||+.+++.|..-| .+|...|.
T Consensus 42 l~~~~vgiiG-~G~IG~~va~~l~~fg-~~v~~~d~ 75 (188)
T d1sc6a1 42 ARGKKLGIIG-YGHIGTQLGILAESLG-MYVYFYDI 75 (188)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECS
T ss_pred ccceEEEEee-cccchhhhhhhccccc-ceEeeccc
Confidence 3568999996 9999999999999999 59999664
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=87.81 E-value=0.2 Score=43.23 Aligned_cols=75 Identities=20% Similarity=0.092 Sum_probs=46.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCH---HHHHHHHc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI---SQIKKVLE 83 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~---~~l~~~l~ 83 (520)
.+.+|+|.|+ |-+|...+..+...|..+|++.|..+. +-.+.. .-+...+. |-.+. +.+.++..
T Consensus 25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~--------rl~~a~---~~Ga~~~~-~~~~~~~~~~i~~~t~ 91 (195)
T d1kola2 25 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPA--------RLAHAK---AQGFEIAD-LSLDTPLHEQIAALLG 91 (195)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHH--------HHHHHH---HTTCEEEE-TTSSSCHHHHHHHHHS
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccch--------hhHhhh---hccccEEE-eCCCcCHHHHHHHHhC
Confidence 4679999985 999988888887788668888665431 101111 11334332 33332 33444443
Q ss_pred --CCCEEEEcccC
Q 010005 84 --GASTVFYVDAT 94 (520)
Q Consensus 84 --~~D~Vih~aa~ 94 (520)
++|++|.+.|.
T Consensus 92 g~g~D~vid~vG~ 104 (195)
T d1kola2 92 EPEVDCAVDAVGF 104 (195)
T ss_dssp SSCEEEEEECCCT
T ss_pred CCCcEEEEECccc
Confidence 58999999885
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=87.54 E-value=0.29 Score=45.46 Aligned_cols=35 Identities=23% Similarity=0.408 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~ 43 (520)
++|||+|.| +|+-|...|..|.++| ++|.+++...
T Consensus 1 k~KKI~IIG-aG~sGL~aA~~L~k~G-~~V~viEk~~ 35 (314)
T d2bi7a1 1 KSKKILIVG-AGFSGAVIGRQLAEKG-HQVHIIDQRD 35 (314)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHTTT-CEEEEEESSS
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHhCC-CCEEEEECCC
Confidence 468999998 9999999999999999 5999977654
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=87.38 E-value=0.13 Score=44.50 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=29.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
.+++|.|.| .|-||+.+++.|..-| .+|.++|.
T Consensus 42 ~gk~vgIiG-~G~IG~~va~~l~~fg-~~V~~~d~ 74 (197)
T d1j4aa1 42 RDQVVGVVG-TGHIGQVFMQIMEGFG-AKVITYDI 74 (197)
T ss_dssp GGSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECS
T ss_pred cCCeEEEec-ccccchhHHHhHhhhc-ccccccCc
Confidence 468999998 9999999999999999 59999764
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.01 E-value=0.46 Score=37.46 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
.+++++|.| +|++|-.++..|.+.| .+|+++++
T Consensus 21 ~pk~vvIvG-gG~iG~E~A~~l~~~G-~~Vtlv~~ 53 (125)
T d3grsa2 21 LPGRSVIVG-AGYIAVEMAGILSALG-SKTSLMIR 53 (125)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECS
T ss_pred cCCEEEEEc-CCccHHHHHHHHhcCC-cEEEEEee
Confidence 357999998 8999999999999999 59999443
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=86.98 E-value=1.2 Score=35.13 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=49.9
Q ss_pred CCCCCCCCCeEEEEcCCC----------hhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEe
Q 010005 1 MPFDEAIPRTCVVLNGRG----------FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV 70 (520)
Q Consensus 1 m~~~~~~~~~ILVtGatG----------fIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~ 70 (520)
||.. ...++|||.|+.. |.+.+.+++|.+.| ++++.++..+.. -+.+. .-..-+..
T Consensus 1 mp~~-~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g-~~~iliN~NP~T---Vstd~---------d~aD~lYf 66 (127)
T d1a9xa3 1 MPKR-TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEG-YRVINVNSNPAT---IMTDP---------EMADATYI 66 (127)
T ss_dssp CCCC-SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHT-CEEEEECSCTTC---GGGCG---------GGSSEEEC
T ss_pred CCCC-CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcC-CeEEEecCchHh---hhcCh---------hhcceeee
Confidence 5433 3558999999843 67889999999999 688886655421 11110 01123334
Q ss_pred cCCCHHHHHHHHc--CCCEEEEcc
Q 010005 71 DVRDISQIKKVLE--GASTVFYVD 92 (520)
Q Consensus 71 Dl~d~~~l~~~l~--~~D~Vih~a 92 (520)
.-...+.+.++++ ++|.|+-..
T Consensus 67 ePlt~e~v~~Ii~~E~pd~il~~~ 90 (127)
T d1a9xa3 67 EPIHWEVVRKIIEKERPDAVLPTM 90 (127)
T ss_dssp SCCCHHHHHHHHHHHCCSEEECSS
T ss_pred ecCCHHHHHHHHHHhCcCCeEEEe
Confidence 4456788888885 799987443
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=86.86 E-value=0.39 Score=37.74 Aligned_cols=32 Identities=25% Similarity=0.481 Sum_probs=27.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
.++++|.| +|++|-.++..|.+.| .+|+++++
T Consensus 32 ~~~vvIiG-gG~iG~E~A~~l~~~g-~~Vtlv~~ 63 (122)
T d1xhca2 32 SGEAIIIG-GGFIGLELAGNLAEAG-YHVKLIHR 63 (122)
T ss_dssp HSEEEEEE-CSHHHHHHHHHHHHTT-CEEEEECS
T ss_pred CCcEEEEC-CcHHHHHHHHHhhccc-ceEEEEec
Confidence 36889987 8999999999999999 59999443
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=86.76 E-value=0.23 Score=41.74 Aligned_cols=30 Identities=27% Similarity=0.172 Sum_probs=27.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEE
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRV 38 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~ 38 (520)
+.+|||+||+|-+|...++.....| .+|++
T Consensus 24 ~~~VLV~gaaGgVG~~avQlAk~~G-a~Via 53 (167)
T d1tt7a2 24 KGSVLVTGATGGVGGIAVSMLNKRG-YDVVA 53 (167)
T ss_dssp GCCEEEESTTSHHHHHHHHHHHHHT-CCEEE
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcC-CceEE
Confidence 4579999999999999999999999 58888
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=86.60 E-value=0.32 Score=39.98 Aligned_cols=31 Identities=10% Similarity=0.114 Sum_probs=27.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
|||.+.| +|-+|+++++.|.+.| ++|++.|+
T Consensus 1 MkIg~IG-~G~mG~al~~~l~~~~-~~i~v~~r 31 (152)
T d2ahra2 1 MKIGIIG-VGKMASAIIKGLKQTP-HELIISGS 31 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTTSS-CEEEEECS
T ss_pred CEEEEEe-ccHHHHHHHHHHHhCC-CeEEEEcC
Confidence 6899997 9999999999999999 59998443
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=86.52 E-value=0.27 Score=42.27 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=29.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
-.+++|.|.| .|-||+.+++.|..-| .+|.+.|.
T Consensus 47 L~gktvgIiG-~G~IG~~va~~l~~fg-~~v~~~d~ 80 (193)
T d1mx3a1 47 IRGETLGIIG-LGRVGQAVALRAKAFG-FNVLFYDP 80 (193)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHTTT-CEEEEECT
T ss_pred eeCceEEEec-cccccccceeeeeccc-cceeeccC
Confidence 4568999997 9999999999999999 59999664
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=86.50 E-value=0.15 Score=42.99 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=27.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEec
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD 40 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D 40 (520)
.++++|+|.| +|-.+++++..|.+.|. +|++++
T Consensus 16 ~~~k~vlIlG-aGGaarai~~al~~~g~-~i~I~n 48 (170)
T d1nyta1 16 RPGLRILLIG-AGGASRGVLLPLLSLDC-AVTITN 48 (170)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTTC-EEEEEC
T ss_pred CCCCEEEEEC-CcHHHHHHHHHhcccce-EEEecc
Confidence 3578999999 57779999999999994 888843
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=86.49 E-value=0.42 Score=40.14 Aligned_cols=31 Identities=13% Similarity=0.119 Sum_probs=25.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEe
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~ 39 (520)
|++|.|-| -|-||+.+.+.|.+++.-+|+++
T Consensus 1 M~~VgING-fGRIGR~v~R~l~~~~di~vvaI 31 (171)
T d1cf2o1 1 MKAVAING-YGTVGKRVADAIAQQDDMKVIGV 31 (171)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTSSSEEEEEE
T ss_pred CeEEEEEc-CcHHHHHHHHHHHhCCCceEEEE
Confidence 47899987 89999999999998875565553
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=86.34 E-value=0.39 Score=37.84 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=28.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEec
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD 40 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D 40 (520)
..+++++|.| +|+||-.++..|.+.| .+|+++.
T Consensus 23 ~~p~~~viiG-~G~iglE~A~~~~~~G-~~Vtvi~ 55 (123)
T d1dxla2 23 EIPKKLVVIG-AGYIGLEMGSVWGRIG-SEVTVVE 55 (123)
T ss_dssp SCCSEEEESC-CSHHHHHHHHHHHHHT-CEEEEEC
T ss_pred ccCCeEEEEc-cchHHHHHHHHHHhcC-CeEEEEE
Confidence 3468999998 8999999999999999 5999943
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=86.32 E-value=0.25 Score=41.47 Aligned_cols=35 Identities=17% Similarity=0.069 Sum_probs=27.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~ 42 (520)
.+.+|+|.|+ |-+|...++.+...|...|++.|..
T Consensus 32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~ 66 (172)
T d1h2ba2 32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVK 66 (172)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccch
Confidence 3568999875 9999999999988886578885554
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.20 E-value=0.34 Score=38.17 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=28.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEec
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD 40 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D 40 (520)
.+++++|.| +|+||-.++..|.+.| .+|+++.
T Consensus 19 ~P~~vvIIG-gG~iG~E~A~~l~~lG-~~Vtii~ 50 (122)
T d1h6va2 19 CPGKTLVVG-ASYVALECAGFLAGIG-LDVTVMV 50 (122)
T ss_dssp CCCSEEEEC-CSHHHHHHHHHHHHTT-CCEEEEE
T ss_pred CCCeEEEEC-CCccHHHHHHHHhhcC-CeEEEEE
Confidence 457899998 8999999999999999 5999943
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=86.04 E-value=0.36 Score=39.65 Aligned_cols=32 Identities=16% Similarity=0.080 Sum_probs=26.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcC-CcEEEEe
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELG-KCIVRVT 39 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g-~~~V~~~ 39 (520)
|++|.|.|+||.||.....-+.+.. .++|.++
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~L 33 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVAL 33 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEE
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEE
Confidence 4789999999999999999888763 3577773
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.85 E-value=0.36 Score=40.80 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=29.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~ 42 (520)
++||+|.| +|..|-..+..|.++|+.+|+++|..
T Consensus 4 ~~kVaIIG-aGpaGl~aA~~l~~~G~~~V~v~E~~ 37 (196)
T d1gtea4 4 SAKIALLG-AGPASISCASFLARLGYSDITIFEKQ 37 (196)
T ss_dssp GCCEEEEC-CSHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CCEEEEEC-ChHHHHHHHHHHHHCCCCeEEEEEec
Confidence 58999998 89999999999999996459886653
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=85.64 E-value=0.44 Score=41.08 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=29.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
.+++|.|.| .|-||+.+++.|..-| -+|.++|.
T Consensus 44 ~~ktvgIiG-~G~IG~~va~~l~~fg-~~v~~~d~ 76 (199)
T d1dxya1 44 GQQTVGVMG-TGHIGQVAIKLFKGFG-AKVIAYDP 76 (199)
T ss_dssp GGSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECS
T ss_pred cceeeeeee-cccccccccccccccc-eeeeccCC
Confidence 468999998 9999999999999999 59999664
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=85.29 E-value=0.67 Score=39.13 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=30.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~ 42 (520)
.+.++|+|.| +|..|-..+..|.++|| +|+++|..
T Consensus 41 ~~~k~V~IIG-aGPAGL~AA~~la~~G~-~Vtl~E~~ 75 (179)
T d1ps9a3 41 VQKKNLAVVG-AGPAGLAFAINAAARGH-QVTLFDAH 75 (179)
T ss_dssp SSCCEEEEEC-CSHHHHHHHHHHHTTTC-EEEEEESS
T ss_pred CCCcEEEEEC-ccHHHHHHHHHHHhhcc-ceEEEecc
Confidence 3568999998 89999999999999995 99996553
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=85.23 E-value=0.61 Score=36.81 Aligned_cols=34 Identities=18% Similarity=0.386 Sum_probs=29.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
...++++|.| +|+||-.++..|.+.| .+|++++.
T Consensus 24 ~~p~~vvIiG-gG~IG~E~A~~~~~~G-~~Vtive~ 57 (125)
T d1ojta2 24 EVPGKLLIIG-GGIIGLEMGTVYSTLG-SRLDVVEM 57 (125)
T ss_dssp CCCSEEEEES-CSHHHHHHHHHHHHHT-CEEEEECS
T ss_pred ccCCeEEEEC-CCHHHHHHHHHhhcCC-CEEEEEEe
Confidence 3468999998 8999999999999999 59999544
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=85.19 E-value=0.39 Score=40.49 Aligned_cols=37 Identities=27% Similarity=0.317 Sum_probs=30.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~ 43 (520)
.++.+|+|+| .|-+|...++.+...|..+|+++|...
T Consensus 28 ~~g~tVlI~G-~GgvGl~ai~~ak~~G~~~Vi~vd~~~ 64 (176)
T d1d1ta2 28 KPGSTCVVFG-LGGVGLSVIMGCKSAGASRIIGIDLNK 64 (176)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CCCCEEEEEC-CCchhHHHHHHHHHcCCceEEEecCcH
Confidence 3467899998 599999999999999966899966543
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=85.14 E-value=0.75 Score=38.48 Aligned_cols=37 Identities=22% Similarity=0.219 Sum_probs=30.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~ 43 (520)
.++.+|+|.|+ |-+|...++.+...|..+|++.|+..
T Consensus 26 ~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~ 62 (174)
T d1p0fa2 26 TPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHK 62 (174)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred CCCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChH
Confidence 45679999985 99999999999999966799966543
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.13 E-value=0.35 Score=39.53 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=28.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEec
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD 40 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D 40 (520)
.++++|||+|| |.+|..-++.|++.|. +|++++
T Consensus 11 l~gkrvLViGg-G~va~~ka~~Ll~~GA-~VtVva 43 (150)
T d1kyqa1 11 LKDKRILLIGG-GEVGLTRLYKLMPTGC-KLTLVS 43 (150)
T ss_dssp CTTCEEEEEEE-SHHHHHHHHHHGGGTC-EEEEEE
T ss_pred eCCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEe
Confidence 46799999996 9999999999999994 888853
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=84.85 E-value=0.22 Score=42.04 Aligned_cols=111 Identities=10% Similarity=0.024 Sum_probs=58.8
Q ss_pred CCeEEEEcCCChhHHH--HHHHHHhcC---CcEEEEecCCcccccCCCCC-CCCCCCC--CCCCCcEEEEecCCCHHHHH
Q 010005 8 PRTCVVLNGRGFVGRS--LVLRLLELG---KCIVRVTDSTQSLQLDPSES-NSLLPDS--LSSGRAEYHQVDVRDISQIK 79 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~--lv~~L~~~g---~~~V~~~D~~~~~~l~r~~~-~~~l~~~--~~~~~v~~~~~Dl~d~~~l~ 79 (520)
.|||.|.|| |.+|.. ++..|+... ..+++.+|++... ... ...+.+. ......+.... .+..
T Consensus 2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~----~~~~~~~~~~~~~~~~~~~~i~~~-----td~~ 71 (171)
T d1obba1 2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEER----LDAILTIAKKYVEEVGADLKFEKT-----MNLD 71 (171)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHH----HHHHHHHHHHHHHHTTCCCEEEEE-----SCHH
T ss_pred CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchH----HHHHHHHHHHHHHhcCCCeEEEEe-----CChh
Confidence 589999995 888865 344455431 1489998876421 000 0000000 00112222221 1246
Q ss_pred HHHcCCCEEEEcccCCCCC-------------------cch--------hhHHhhhHHHHHHHHHHHHHCCCCEEE
Q 010005 80 KVLEGASTVFYVDATDLNT-------------------DDF--------YNCYMIIVQGAKNVVTACRECKVRRLV 128 (520)
Q Consensus 80 ~~l~~~D~Vih~aa~~~~~-------------------~~~--------~~~~~~Nv~gt~~ll~aa~~~gvkr~V 128 (520)
++++++|+|+..++..... ... ......|+.-.+.+++.+++...+-++
T Consensus 72 eaL~dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~ 147 (171)
T d1obba1 72 DVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWY 147 (171)
T ss_dssp HHHTTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred hcccCCCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEE
Confidence 6889999999987652110 000 000124788888889988888744333
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=84.56 E-value=7.2 Score=30.06 Aligned_cols=71 Identities=13% Similarity=0.132 Sum_probs=45.6
Q ss_pred CCeEEEEcCCC----------hhHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCcEEEEecCCCHHH
Q 010005 8 PRTCVVLNGRG----------FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ 77 (520)
Q Consensus 8 ~~~ILVtGatG----------fIG~~lv~~L~~~g~~~V~~~D~~~~~~l~r~~~~~~l~~~~~~~~v~~~~~Dl~d~~~ 77 (520)
.++|||.|+.. +-+.+.+++|.+.| ++++.++..+.. -+.+. .-..-+...-...+.
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g-~~~IliN~NPeT---Vstd~---------d~aD~lYfeplt~e~ 70 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDG-YETIMVNCNPET---VSTDY---------DTSDRLYFEPVTLED 70 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTT-CEEEEECCCTTS---STTST---------TSSSEEECCCCSHHH
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcC-CeEEEEecChhh---hhcCh---------hhcCceEEccCCHHH
Confidence 57999999744 67889999999999 688886655421 11110 011223333345677
Q ss_pred HHHHHc--CCCEEEEc
Q 010005 78 IKKVLE--GASTVFYV 91 (520)
Q Consensus 78 l~~~l~--~~D~Vih~ 91 (520)
+.++++ ++|.|+--
T Consensus 71 v~~Ii~~E~p~~ii~~ 86 (121)
T d1a9xa4 71 VLEIVRIEKPKGVIVQ 86 (121)
T ss_dssp HHHHHHHHCCSEEECS
T ss_pred HHHHHHHhCCCEEEee
Confidence 777774 68888733
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=83.75 E-value=0.6 Score=42.46 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=30.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~ 42 (520)
.+.++|+|+| +|..|-..+..|.++| ++|+++|..
T Consensus 28 ~~pkkV~IIG-aG~aGLsaA~~L~~~G-~~V~vlE~~ 62 (370)
T d2iida1 28 SNPKHVVIVG-AGMAGLSAAYVLAGAG-HQVTVLEAS 62 (370)
T ss_dssp SSCCEEEEEC-CBHHHHHHHHHHHHHT-CEEEEECSS
T ss_pred CCCCeEEEEC-CCHHHHHHHHHHHHCC-CCEEEEeCC
Confidence 4568999998 8999999999999999 599996643
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=83.55 E-value=0.89 Score=35.23 Aligned_cols=33 Identities=12% Similarity=-0.110 Sum_probs=28.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
..++|+|.| +|++|-.++..|.+.| .+|+++++
T Consensus 21 ~~~~vvVvG-gG~ig~E~A~~l~~~g-~~vt~i~~ 53 (121)
T d1mo9a2 21 PGSTVVVVG-GSKTAVEYGCFFNATG-RRTVMLVR 53 (121)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECS
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcc-hhheEeec
Confidence 358999987 8999999999999999 58999544
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=83.51 E-value=0.46 Score=38.95 Aligned_cols=31 Identities=29% Similarity=0.301 Sum_probs=26.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcC-CcEEEE
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELG-KCIVRV 38 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g-~~~V~~ 38 (520)
+++|.|.|+||.||.....-+.+.. .++|.+
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~ 33 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIA 33 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEE
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEE
Confidence 5899999999999999999887753 357777
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=83.45 E-value=0.23 Score=41.76 Aligned_cols=77 Identities=13% Similarity=0.097 Sum_probs=41.2
Q ss_pred CCCeEEEEcCCChhHHH-HHHHHHhc-CC---cEEEEecCCcccccCCCCCCC-CCCCC--CCCCCcEEE-EecCCCHHH
Q 010005 7 IPRTCVVLNGRGFVGRS-LVLRLLEL-GK---CIVRVTDSTQSLQLDPSESNS-LLPDS--LSSGRAEYH-QVDVRDISQ 77 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~-lv~~L~~~-g~---~~V~~~D~~~~~~l~r~~~~~-~l~~~--~~~~~v~~~-~~Dl~d~~~ 77 (520)
+..||.|.||.+ +|.. ++..|+.+ .. .+|+.+|++..+ ..... .+... ......... ..|
T Consensus 2 k~~KI~iIGaGs-v~~~~~~~~ll~~~~~l~~~eivL~Did~~~----~~~~~~~~~~~~~~~~~~~~~~~~~d------ 70 (167)
T d1u8xx1 2 KSFSIVIAGGGS-TFTPGIVLMLLDHLEEFPIRKLKLYDNDKER----QDRIAGACDVFIREKAPDIEFAATTD------ 70 (167)
T ss_dssp CCEEEEEECTTS-SSHHHHHHHHHHTTTTSCEEEEEEECSCHHH----HHHHHHHHHHHHHHHCTTSEEEEESC------
T ss_pred CCceEEEECCCh-hhhHHHHHHHHhhhhhcCCCEEEEEcCChhH----HHHHHHHHHHHHHHhCCCcceEecCC------
Confidence 457899999854 5543 44555543 11 379998876421 10000 00000 001122222 222
Q ss_pred HHHHHcCCCEEEEcccC
Q 010005 78 IKKVLEGASTVFYVDAT 94 (520)
Q Consensus 78 l~~~l~~~D~Vih~aa~ 94 (520)
..++++++|+||..++.
T Consensus 71 ~~eal~~AD~Vvitag~ 87 (167)
T d1u8xx1 71 PEEAFTDVDFVMAHIRV 87 (167)
T ss_dssp HHHHHSSCSEEEECCCT
T ss_pred hhhccCCCCEEEECCCc
Confidence 36788999999999987
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=83.40 E-value=0.51 Score=42.16 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=27.1
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCcEEEEecCC
Q 010005 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (520)
Q Consensus 11 ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~ 42 (520)
|+|+| +|.+|..++.+|.++| .+|+++|..
T Consensus 7 vvIIG-aGi~Gls~A~~La~~G-~~V~vlE~~ 36 (276)
T d1ryia1 7 AVVIG-GGIIGSAIAYYLAKEN-KNTALFESG 36 (276)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTT-CCEEEECSS
T ss_pred EEEEC-cCHHHHHHHHHHHHCC-CcEEEEeCC
Confidence 99998 8999999999999999 599997754
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=83.23 E-value=0.38 Score=36.90 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=24.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEE
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRV 38 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~ 38 (520)
++|+|+|.| +|.-|.-++..|.+.+. +|+.
T Consensus 31 ~gK~VlVVG-~g~Sa~dia~~l~~~ak-~v~~ 60 (107)
T d2gv8a2 31 VGESVLVVG-GASSANDLVRHLTPVAK-HPIY 60 (107)
T ss_dssp TTCCEEEEC-SSHHHHHHHHHHTTTSC-SSEE
T ss_pred CCCeEEEEC-CCCCHHHHHHHHHHhcC-EEEE
Confidence 579999998 78999999999998773 4444
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=82.99 E-value=0.34 Score=40.99 Aligned_cols=29 Identities=34% Similarity=0.329 Sum_probs=26.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEE
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRV 38 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~ 38 (520)
.+|||+||+|-+|+..++.....| .+|++
T Consensus 33 ~~vlV~gasGGVG~~aiQlAk~~G-a~Via 61 (177)
T d1o89a2 33 GEIVVTGASGGVGSTAVALLHKLG-YQVVA 61 (177)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTT-CCEEE
T ss_pred CcEEEEEccccchHHHHHHHHHcC-CCeEE
Confidence 489999999999999999999999 58888
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=82.95 E-value=0.66 Score=39.20 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=30.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~ 43 (520)
.-+|+|.| .|-+|.+-++.....| -+|+++|++.
T Consensus 29 pa~VvViG-aGvaG~~Aa~~A~~lG-A~V~v~D~~~ 62 (183)
T d1l7da1 29 PARVLVFG-VGVAGLQAIATAKRLG-AVVMATDVRA 62 (183)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSCS
T ss_pred CcEEEEEc-CcHHHHHHHHHHHHcC-CEEEEEeccH
Confidence 35899998 8999999999999999 5999998764
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=82.89 E-value=0.5 Score=42.19 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=27.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 9 ~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
|+|+|+| +|.-|-..+..|.++|+ +|++++.
T Consensus 1 m~V~IIG-aG~aGL~aA~~L~~~G~-~V~vlE~ 31 (347)
T d2ivda1 1 MNVAVVG-GGISGLAVAHHLRSRGT-DAVLLES 31 (347)
T ss_dssp CCEEEEC-CBHHHHHHHHHHHTTTC-CEEEECS
T ss_pred CeEEEEC-CCHHHHHHHHHHHhCCC-CEEEEec
Confidence 6899999 59999999999999995 9999554
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=82.67 E-value=0.73 Score=40.61 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=28.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~ 42 (520)
.+||+|.| +|..|..++..|.++| .+|+++|..
T Consensus 4 ~~kV~IiG-aG~aGl~~A~~L~~~G-~~v~v~Er~ 36 (265)
T d2voua1 4 TDRIAVVG-GSISGLTAALMLRDAG-VDVDVYERS 36 (265)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSS
T ss_pred CCcEEEEC-cCHHHHHHHHHHHHCC-CCEEEEeCC
Confidence 47999998 8999999999999999 499996543
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=82.34 E-value=0.69 Score=41.25 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=28.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
.|||+|+| +|.-|-..+..|.++| ++|+++|.
T Consensus 1 ~KkV~IIG-aG~aGL~aA~~La~~G-~~V~vlE~ 32 (373)
T d1seza1 1 AKRVAVIG-AGVSGLAAAYKLKIHG-LNVTVFEA 32 (373)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTS-CEEEEECS
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhCC-CCEEEEeC
Confidence 37999998 9999999999999999 59999654
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=81.95 E-value=0.48 Score=40.41 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=29.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
...++|.|.| .|-||+.+++.|...| .+|...|.
T Consensus 42 l~~~~vgiiG-~G~IG~~va~~l~~fg-~~v~~~d~ 75 (188)
T d2naca1 42 LEAMHVGTVA-AGRIGLAVLRRLAPFD-VHLHYTDR 75 (188)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHGGGT-CEEEEECS
T ss_pred ccccceeecc-ccccchhhhhhhhccC-ceEEEEee
Confidence 3568999987 9999999999999999 59999665
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=81.72 E-value=0.86 Score=37.37 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=29.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCc
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQ 43 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~ 43 (520)
+|||+|.| +|++|-.++..|.+.++ .+|+++|..+
T Consensus 2 gkrivIvG-gG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 2 GRKVVVVG-GGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCcEEEEC-ccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 58999998 89999999999999874 3688866544
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=81.14 E-value=0.63 Score=38.73 Aligned_cols=36 Identities=25% Similarity=0.268 Sum_probs=26.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~ 42 (520)
.++.+|+|.|+ |-+|...+..+...|-.+|++.|+.
T Consensus 27 k~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~ 62 (175)
T d1cdoa2 27 EPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLN 62 (175)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CCCCEEEEEec-CCccchHHHHHHHHhhchheeecch
Confidence 35678999986 5577777777777775678885543
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=81.01 E-value=0.78 Score=37.81 Aligned_cols=35 Identities=17% Similarity=0.059 Sum_probs=28.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~ 42 (520)
.++.+|+|.|+ |-+|...++.+...| .+|+++|+.
T Consensus 26 ~~g~~VlV~Ga-G~vG~~~~~~ak~~G-~~Vi~~~~~ 60 (166)
T d1llua2 26 RPGQWVAISGI-GGLGHVAVQYARAMG-LHVAAIDID 60 (166)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESC
T ss_pred CCCCEEEEeec-cccHHHHHHHHHHcC-Cccceecch
Confidence 34678999885 999999999998899 599996654
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=80.91 E-value=0.98 Score=38.83 Aligned_cols=36 Identities=31% Similarity=0.241 Sum_probs=31.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~ 43 (520)
-++++|+|-| .|-+|+++++.|.+.| .+|++.|.+.
T Consensus 25 L~gk~v~IqG-~G~VG~~~A~~L~~~G-akvvv~d~d~ 60 (201)
T d1c1da1 25 LDGLTVLVQG-LGAVGGSLASLAAEAG-AQLLVADTDT 60 (201)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSCH
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEecchH
Confidence 4679999997 9999999999999999 5999977643
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.50 E-value=0.71 Score=39.14 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=28.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
..++++.|.| .|-||+.+++.+..-| -+|.+.|.
T Consensus 42 l~~k~vgiiG-~G~IG~~va~~~~~fg-~~v~~~d~ 75 (184)
T d1ygya1 42 IFGKTVGVVG-LGRIGQLVAQRIAAFG-AYVVAYDP 75 (184)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHTTT-CEEEEECT
T ss_pred ccceeeeecc-ccchhHHHHHHhhhcc-ceEEeecC
Confidence 4567888887 9999999999999999 59999654
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=80.42 E-value=0.98 Score=41.78 Aligned_cols=35 Identities=17% Similarity=0.106 Sum_probs=29.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhcCC-cEEEEecCCc
Q 010005 8 PRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQ 43 (520)
Q Consensus 8 ~~~ILVtGatGfIG~~lv~~L~~~g~-~~V~~~D~~~ 43 (520)
+|||+|+| +|.-|-..+..|+++|. ++|++++...
T Consensus 4 ~KrVaIIG-aG~sGl~~A~~L~~~~~~~~v~vfEk~~ 39 (335)
T d2gv8a1 4 IRKIAIIG-AGPSGLVTAKALLAEKAFDQVTLFERRG 39 (335)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred CCeEEEEC-cCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 57999998 89999999999998763 4899976654
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=80.24 E-value=1.3 Score=38.59 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=30.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecCCc
Q 010005 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (520)
Q Consensus 6 ~~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~~~ 43 (520)
...++|+|.| +|..|-..+..|.++| ++|++++...
T Consensus 47 ~~~k~VvIIG-aGpAGl~aA~~l~~~G-~~v~l~E~~~ 82 (233)
T d1djqa3 47 KNKDSVLIVG-AGPSGSEAARVLMESG-YTVHLTDTAE 82 (233)
T ss_dssp SSCCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSSS
T ss_pred cCCceEEEEc-ccHHHHHHHHHHHHhc-cceeeEeecc
Confidence 3568999998 8999999999999999 5999966543
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=80.15 E-value=0.52 Score=40.30 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhcCCcEEEEecC
Q 010005 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (520)
Q Consensus 7 ~~~~ILVtGatGfIG~~lv~~L~~~g~~~V~~~D~ 41 (520)
.++++.|.| .|-||+.+++.|...| .+|...|.
T Consensus 46 ~g~tvgIiG-~G~IG~~va~~l~~fg-~~v~~~d~ 78 (191)
T d1gdha1 46 DNKTLGIYG-FGSIGQALAKRAQGFD-MDIDYFDT 78 (191)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHTTT-CEEEEECS
T ss_pred cccceEEee-cccchHHHHHHHHhhc-cccccccc
Confidence 468999997 9999999999999999 59999664
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